Citrus Sinensis ID: 028437

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLVFIV
Secondary Structure (PSIPRED)
ccccHHHHHHHcccccccccccccccccccEEEEccccccHHHHHHHHHHcccccEEEEEEcccccccHHccccccccccEEEEEcccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHcccccccEEEccHHHHHHHHHHHHHHHccccccEEEEEEccccEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHcccccccEEEEEEcHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccccccccEEEcccccccc
Coil and Loop (DISEMBL)
MRSSVLRSVKTLakpagargyssesvpdrKVAVLGaaggigqpLALLMKLNPLVSRLALydiantpgvaadvgHINTRSevagymgndqlgqaledsdvviipagvprkpgmtrddlfniNAGIVKDLCSAIAKYCPNAIVNmisnpvnstvPIAAEVFKkagtynekklfgvTTLDVVRAKtfyagkanVNVAGLLKLLthknlvfiv
Flexible Loop (DISEMBL)
mrssvlrsvktlakpagargyssesvpdRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKagtynekklfgvttLDVVRAKTFYAGKANVNVAGLLkllthknlvfiv
Low Complexity Region (SEG)
MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLVFIV
Disordered region (IsUnstruct)
*****************************KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLVFI*
Disordered Region (DISOPRED)
*****************************KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLVFIV
Disordered Region (DISEMBL)
********VKTLA************VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLVFIV
Disordered Region (DISPRO)
************AKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLLTHK******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLVFIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
P46487	347	Malate dehydrogenase, mit	N/A	no	0.909	0.547	0.831	5e-90
P17783	347	Malate dehydrogenase, mit	N/A	no	0.832	0.501	0.890	8e-88
Q9LKA3	341	Malate dehydrogenase 2, m	yes	no	0.928	0.568	0.798	1e-87
Q9ZP06	341	Malate dehydrogenase 1, m	no	no	0.928	0.568	0.798	5e-87
P83373	339	Malate dehydrogenase, mit	N/A	no	0.894	0.551	0.821	2e-85
Q43744	341	Malate dehydrogenase, mit	N/A	no	0.928	0.568	0.793	8e-85
Q42972	356	Malate dehydrogenase, gly	no	no	0.813	0.477	0.717	3e-65
P46488	356	Malate dehydrogenase, gly	N/A	no	0.842	0.494	0.675	1e-63
P37228	353	Malate dehydrogenase, gly	no	no	0.751	0.444	0.745	5e-63
P19446	356	Malate dehydrogenase, gly	N/A	no	0.842	0.494	0.664	6e-63

>sp|P46487|MDHM_EUCGU Malate dehydrogenase, mitochondrial OS=Eucalyptus gunnii GN=MDH PE=2 SV=1

 Score =  330 bits (846), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 163/196 (83%), Positives = 176/196 (89%), Gaps = 6/196 (3%)

Query: 1   MRSSVLRSVKTLAKPAGAR------GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLV 54
           MR+S+LR +++ +  A  R       Y SESVP+RKVAVLGAAGGIGQPLALLMKLNPLV
Sbjct: 1   MRASMLRLIRSRSSSAAPRPHLLRRAYGSESVPERKVAVLGAAGGIGQPLALLMKLNPLV 60

Query: 55  SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTR 114
           S+LALYDIA TPGVAADVGHINTRSEVAGY+G +QLGQALE SDVVIIPAGVPRKPGMTR
Sbjct: 61  SQLALYDIAGTPGVAADVGHINTRSEVAGYVGEEQLGQALEGSDVVIIPAGVPRKPGMTR 120

Query: 115 DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT 174
           DDLFNINAGIVK LC+AIAKYCPNA+VNMISNPVNSTVPIAAE+FKKAGTYNEKKL GVT
Sbjct: 121 DDLFNINAGIVKSLCTAIAKYCPNAVVNMISNPVNSTVPIAAEIFKKAGTYNEKKLLGVT 180

Query: 175 TLDVVRAKTFYAGKAN 190
           TLDVVRAKTFYAGKA 
Sbjct: 181 TLDVVRAKTFYAGKAK 196

Eucalyptus gunnii (taxid: 3933)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1

 Score =  322 bits (826), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 155/174 (89%), Positives = 168/174 (96%)

Query: 21  YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE 80
           +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDIA TPGVAADVGH+NTRSE
Sbjct: 27  FATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSE 86

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
           V GY+G +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPNA+
Sbjct: 87  VTGYVGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNAL 146

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
           +NMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVTTLDVVRAKTFYAGKANV VA
Sbjct: 147 INMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVA 200

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9LKA3|MDHM2_ARATH Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1

 Score =  322 bits (825), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/194 (79%), Positives = 177/194 (91%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LY
Sbjct: 2   FRSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+L  AIAKYCP A+VNMISNPVNSTVPIAAE+FKKAGTY+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVA 194
           A+TFYAGK++VNVA
Sbjct: 182 ARTFYAGKSDVNVA 195

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP06|MDHM1_ARATH Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1

 Score =  320 bits (819), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 155/194 (79%), Positives = 175/194 (90%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LY
Sbjct: 2   FRSMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRSEV GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+LC+AIAKYCP+A++NMISNPVNSTVPIAAE+FKKAG Y+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVA 194
           A+TFYAGKANV VA
Sbjct: 182 ARTFYAGKANVPVA 195

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P83373|MDHM_FRAAN Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1

 Score =  315 bits (806), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 157/191 (82%), Positives = 171/191 (89%), Gaps = 4/191 (2%)

Query: 4   SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63
           S++RSV  +A+    RGYSSESVP RKVAVLGAAGGIGQPLALLMKLNPLVS+L+LYDIA
Sbjct: 6   SLIRSVSRVAR----RGYSSESVPQRKVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIA 61

Query: 64  NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAG 123
            TPGVAADV HINTRSEV GY G +QLG+ALE  DVVIIPAGVPRKPGMTRDDLFNINAG
Sbjct: 62  GTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKPGMTRDDLFNINAG 121

Query: 124 IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT 183
           IV+ L +AIAKYCP+AI+NMISNPVNSTVPIA+EV KKAG Y+EKKLFGVTTLDVVRAKT
Sbjct: 122 IVRSLTAAIAKYCPHAIINMISNPVNSTVPIASEVLKKAGVYDEKKLFGVTTLDVVRAKT 181

Query: 184 FYAGKANVNVA 194
           FYAGKA V VA
Sbjct: 182 FYAGKAGVPVA 192

Fragaria ananassa (taxid: 3747)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q43744|MDHM_BRANA Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1

 Score =  312 bits (800), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 154/194 (79%), Positives = 173/194 (89%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS+++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LY
Sbjct: 2   FRSALVRSSASAKQSLLRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRS+V GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSQVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+L SAIAKYCP+A+VNMISNPVNSTVPIAAE+FKKAG Y+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLWSAIAKYCPHALVNMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVA 194
            KT YAGKANV VA
Sbjct: 182 VKTSYAGKANVPVA 195

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3

 Score =  248 bits (632), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/170 (71%), Positives = 139/170 (81%)

Query: 17  GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN 76
           G+   +  + P  KVA+LGA+GGIGQPLALLMK+NPLVS L LYD+ NTPGV AD+ H+N
Sbjct: 33  GSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMN 92

Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           T + V G++G  QL  AL   D+VIIPAGVPRKPGMTRDDLFNINAGIV+ LC  IAK C
Sbjct: 93  TGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC 152

Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186
           PNAIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVTTLDVVRA TF A
Sbjct: 153 PNAIVNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVA 202

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1

 Score =  242 bits (618), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 125/185 (67%), Positives = 142/185 (76%), Gaps = 9/185 (4%)

Query: 2   RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
            SSVLR     AK  GA G+        KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD
Sbjct: 27  ESSVLRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYD 77

Query: 62  IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
           + N PGV AD+ H++T + V G++G  QL +AL   D+V+IPAGVPRKPGMTRDDLF IN
Sbjct: 78  VVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRKPGMTRDDLFKIN 137

Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
           AGIVK LC  IAK CP AIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA
Sbjct: 138 AGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRA 197

Query: 182 KTFYA 186
            TF A
Sbjct: 198 NTFVA 202

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2

 Score =  240 bits (612), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 117/157 (74%), Positives = 133/157 (84%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV +D+ H++T + V G++G  Q
Sbjct: 43  KVAILGAAGGIGQPLAMLMKMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQ 102

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L  AL   D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC AIAK CP AIVN+ISNPVN
Sbjct: 103 LEDALIGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNVISNPVN 162

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186
           STVPIAAEVFK+AGTY+ K+L GVT LDVVRA TF A
Sbjct: 163 STVPIAAEVFKRAGTYDPKRLLGVTMLDVVRANTFVA 199

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1

 Score =  240 bits (612), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 123/185 (66%), Positives = 140/185 (75%), Gaps = 9/185 (4%)

Query: 2   RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
            SS LR     AK  GA G+        KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD
Sbjct: 27  ESSALRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYD 77

Query: 62  IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
           + N PGV AD+ H++T + V G++G  QL  AL   D++I+PAGVPRKPGMTRDDLF IN
Sbjct: 78  VVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKIN 137

Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
           AGIVK LC  IAK CP AIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA
Sbjct: 138 AGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRA 197

Query: 182 KTFYA 186
            TF A
Sbjct: 198 NTFVA 202

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
255566555	345	malate dehydrogenase, putative [Ricinus	0.928	0.562	0.844	5e-90
1170898	347	RecName: Full=Malate dehydrogenase, mito	0.909	0.547	0.831	2e-88
21388550	344	putative mitochondrial NAD-dependent mal	0.942	0.572	0.803	1e-87
350536645	346	mitochondrial malate dehydrogenase [Sola	0.928	0.560	0.814	3e-87
449438883	347	PREDICTED: malate dehydrogenase, mitocho	0.842	0.507	0.892	8e-87
7798706	352	malate dehydrogenase [Vitis vinifera]	0.928	0.551	0.798	1e-86
356543225	350	PREDICTED: malate dehydrogenase 1, mitoc	0.937	0.56	0.795	1e-86
5929964	345	malate dehydrogenase [Glycine max]	0.937	0.568	0.795	2e-86
225443845	352	PREDICTED: malate dehydrogenase, mitocho	0.928	0.551	0.793	4e-86
126896	347	RecName: Full=Malate dehydrogenase, mito	0.832	0.501	0.890	4e-86

>gi|255566555|ref|XP_002524262.1| malate dehydrogenase, putative [Ricinus communis] gi|223536453|gb|EEF38101.1| malate dehydrogenase, putative [Ricinus communis]

 Score =  335 bits (860), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 168/199 (84%), Positives = 179/199 (89%), Gaps = 5/199 (2%)

Query: 1   MRSSVLRSVKTLAKPAGA-----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS 55
           MRSS+ RSVK L   + +     RGY+SE+VPDRKVAVLGAAGGIGQPLALLMKLNPLVS
Sbjct: 1   MRSSLFRSVKALGSTSSSSHLLRRGYASEAVPDRKVAVLGAAGGIGQPLALLMKLNPLVS 60

Query: 56  RLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRD 115
            LALYDIANTPGVAADV HINTRS+V GY+G DQLG+ALE SDVVIIPAGVPRKPGMTRD
Sbjct: 61  NLALYDIANTPGVAADVSHINTRSDVKGYVGEDQLGKALEGSDVVIIPAGVPRKPGMTRD 120

Query: 116 DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT 175
           DLFNINAGIVK LC AIAKYCPNA+VNMISNPVNSTVPIAAEVFKKAGTY+EK+LFGVTT
Sbjct: 121 DLFNINAGIVKGLCEAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTT 180

Query: 176 LDVVRAKTFYAGKANVNVA 194
           LDVVRAKTFYAGKA V VA
Sbjct: 181 LDVVRAKTFYAGKAKVPVA 199

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1170898|sp|P46487.1|MDHM_EUCGU RecName: Full=Malate dehydrogenase, mitochondrial; Flags: Precursor gi|473206|emb|CAA55383.1| mitochondrial malate dehydrogenase [Eucalyptus gunnii]

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 163/196 (83%), Positives = 176/196 (89%), Gaps = 6/196 (3%)

Query: 1   MRSSVLRSVKTLAKPAGAR------GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLV 54
           MR+S+LR +++ +  A  R       Y SESVP+RKVAVLGAAGGIGQPLALLMKLNPLV
Sbjct: 1   MRASMLRLIRSRSSSAAPRPHLLRRAYGSESVPERKVAVLGAAGGIGQPLALLMKLNPLV 60

Query: 55  SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTR 114
           S+LALYDIA TPGVAADVGHINTRSEVAGY+G +QLGQALE SDVVIIPAGVPRKPGMTR
Sbjct: 61  SQLALYDIAGTPGVAADVGHINTRSEVAGYVGEEQLGQALEGSDVVIIPAGVPRKPGMTR 120

Query: 115 DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT 174
           DDLFNINAGIVK LC+AIAKYCPNA+VNMISNPVNSTVPIAAE+FKKAGTYNEKKL GVT
Sbjct: 121 DDLFNINAGIVKSLCTAIAKYCPNAVVNMISNPVNSTVPIAAEIFKKAGTYNEKKLLGVT 180

Query: 175 TLDVVRAKTFYAGKAN 190
           TLDVVRAKTFYAGKA 
Sbjct: 181 TLDVVRAKTFYAGKAK 196

Source: Eucalyptus gunnii

Species: Eucalyptus gunnii

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21388550|emb|CAD33243.1| putative mitochondrial NAD-dependent malate dehydrogenase [Solanum tuberosum]

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/198 (80%), Positives = 180/198 (90%), Gaps = 1/198 (0%)

Query: 1   MRSSVLRSVKTLAKPAGAR-GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLAL 59
           MR+S+LR++      AG R G++SES PDRKVA+LGAAGGIGQPL+LLMKLNPLVSRLAL
Sbjct: 1   MRTSMLRTLARRTSTAGTRRGFASESAPDRKVAILGAAGGIGQPLSLLMKLNPLVSRLAL 60

Query: 60  YDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFN 119
           YDIA TPGVAADV HINTRSE+ GY G +QLG+ALE +DVVIIPAGVPRKPGMTRDDLFN
Sbjct: 61  YDIAGTPGVAADVSHINTRSEILGYAGEEQLGKALEGADVVIIPAGVPRKPGMTRDDLFN 120

Query: 120 INAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVV 179
           INAGIVK LC+AIAKYCP+A+VN+ISNPVNSTVPIA+EVFKKAGTY+EK+LFGVTTLDVV
Sbjct: 121 INAGIVKSLCTAIAKYCPHALVNVISNPVNSTVPIASEVFKKAGTYDEKRLFGVTTLDVV 180

Query: 180 RAKTFYAGKANVNVAGLL 197
           RAKTFYAGKA VNVA ++
Sbjct: 181 RAKTFYAGKAKVNVADVI 198

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536645|ref|NP_001234001.1| mitochondrial malate dehydrogenase [Solanum lycopersicum] gi|52139816|gb|AAU29198.1| mitochondrial malate dehydrogenase [Solanum lycopersicum]

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 162/199 (81%), Positives = 178/199 (89%), Gaps = 5/199 (2%)

Query: 1   MRSSVLRSVKTLAKPAGA-----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS 55
           MR+S+L+S+   +  AGA     RG++S S P+RKVAVLGAAGGIGQPL+LLMKLNPLVS
Sbjct: 1   MRTSMLKSIVRRSSTAGASYVSRRGFASGSAPERKVAVLGAAGGIGQPLSLLMKLNPLVS 60

Query: 56  RLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRD 115
            L+LYDIA TPGVAADV HINTRSEVAG+ G +QLGQALE +DVVIIPAGVPRKPGMTRD
Sbjct: 61  SLSLYDIAGTPGVAADVSHINTRSEVAGFAGEEQLGQALEGADVVIIPAGVPRKPGMTRD 120

Query: 116 DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT 175
           DLFNINAGIVK LC+AIAKYCPNA+VNMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVT 
Sbjct: 121 DLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTM 180

Query: 176 LDVVRAKTFYAGKANVNVA 194
           LDVVRAKTFYAGKA VNVA
Sbjct: 181 LDVVRAKTFYAGKAKVNVA 199

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438883|ref|XP_004137217.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Cucumis sativus] gi|449483204|ref|XP_004156521.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Cucumis sativus]

 Score =  325 bits (833), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 157/176 (89%), Positives = 168/176 (95%)

Query: 19  RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR 78
           R +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDI  TPGVAADVGH+NTR
Sbjct: 25  RTFATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIGATPGVAADVGHVNTR 84

Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
           SEV GYMG +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPN
Sbjct: 85  SEVTGYMGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPN 144

Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
           A+VNMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVTTLDVVRAKTFYAGKANV VA
Sbjct: 145 ALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVA 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7798706|gb|AAF69802.1|AF195869_1 malate dehydrogenase [Vitis vinifera]

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 162/203 (79%), Positives = 179/203 (88%), Gaps = 9/203 (4%)

Query: 1   MRSSVLRSVKT----LAKPAGA-----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLN 51
           M++S+ RS +T    ++ P+ +     R Y  ES P+RKVAVLGAAGGIGQPLALLMKLN
Sbjct: 1   MKASLFRSAETALRRVSSPSASSHLLRRSYCVESKPERKVAVLGAAGGIGQPLALLMKLN 60

Query: 52  PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPG 111
           PLVS L+LYDIA TPGVAADV HINTRS+VAGYMG+DQLGQALE +D+VIIPAGVPRKPG
Sbjct: 61  PLVSSLSLYDIAGTPGVAADVSHINTRSQVAGYMGDDQLGQALEGADLVIIPAGVPRKPG 120

Query: 112 MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF 171
           MTRDDLFNINAGIVK LC+AIAKYCPNA+VNMISNPVNSTVPIAAEVFKKAGTY+EKKLF
Sbjct: 121 MTRDDLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 180

Query: 172 GVTTLDVVRAKTFYAGKANVNVA 194
           GVTTLDVVRAKTFYAGKA V VA
Sbjct: 181 GVTTLDVVRAKTFYAGKAKVPVA 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543225|ref|XP_003540063.1| PREDICTED: malate dehydrogenase 1, mitochondrial [Glycine max]

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 159/200 (79%), Positives = 180/200 (90%), Gaps = 4/200 (2%)

Query: 1   MRSSVLRSVKTLAKPAGA----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSR 56
           M+ S+LRS+ + A    +    RGY+SE VP+RKVAVLGAAGGIGQPL+LLMKLNPLVS 
Sbjct: 2   MKPSMLRSLHSAATRGASHLFRRGYASEPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSS 61

Query: 57  LALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDD 116
           L+LYDIA TPGVAAD+ HINTRSEV GY G+++LG+ALE +DVVIIPAGVPRKPGMTRDD
Sbjct: 62  LSLYDIAGTPGVAADISHINTRSEVVGYQGDEELGKALEGADVVIIPAGVPRKPGMTRDD 121

Query: 117 LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176
           LFNINAGIVK LC+AIAKYCP+A+VNMISNPVNSTVPIAAEVFKKAGTY+EK+LFGVTTL
Sbjct: 122 LFNINAGIVKTLCTAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTL 181

Query: 177 DVVRAKTFYAGKANVNVAGL 196
           DVVRAKTFYAGKANV VAG+
Sbjct: 182 DVVRAKTFYAGKANVPVAGV 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5929964|gb|AAD56659.1| malate dehydrogenase [Glycine max]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 159/200 (79%), Positives = 180/200 (90%), Gaps = 4/200 (2%)

Query: 1   MRSSVLRSVKTLAKPAGA----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSR 56
           M+ S+LRS+ + A    +    RGY+SE VP+RKVAVLGAAGGIGQPL+LLMKLNPLVS 
Sbjct: 2   MKPSMLRSLHSAATRGASHLFRRGYASEPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSS 61

Query: 57  LALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDD 116
           L+LYDIA TPGVAAD+ HINTRSEV GY G+++LG+ALE +DVVIIPAGVPRKPGMTRDD
Sbjct: 62  LSLYDIAGTPGVAADISHINTRSEVVGYQGDEELGKALEGADVVIIPAGVPRKPGMTRDD 121

Query: 117 LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176
           LFNINAGIVK LC+AIAKYCP+A+VNMISNPVNSTVPIAAEVFKKAGTY+EK+LFGVTTL
Sbjct: 122 LFNINAGIVKTLCTAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTL 181

Query: 177 DVVRAKTFYAGKANVNVAGL 196
           DVVRAKTFYAGKANV VAG+
Sbjct: 182 DVVRAKTFYAGKANVPVAGV 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443845|ref|XP_002275442.1| PREDICTED: malate dehydrogenase, mitochondrial [Vitis vinifera]

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 161/203 (79%), Positives = 179/203 (88%), Gaps = 9/203 (4%)

Query: 1   MRSSVLRS----VKTLAKPAGA-----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLN 51
           M++S+ RS    ++ ++ P+ +     R Y  ES P+RKVAVLGAAGGIGQPLALLMKLN
Sbjct: 1   MKASLFRSAEAALRRVSSPSASSHLLRRSYCVESKPERKVAVLGAAGGIGQPLALLMKLN 60

Query: 52  PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPG 111
           PLVS L+LYDIA TPGVAADV HINTRS+VAGYMG+DQLGQALE +D+VIIPAGVPRKPG
Sbjct: 61  PLVSSLSLYDIAGTPGVAADVSHINTRSQVAGYMGDDQLGQALEGADLVIIPAGVPRKPG 120

Query: 112 MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF 171
           MTRDDLFNINAGIVK LC+AIAKYCPNA+VNMISNPVNSTVPIAAEVFKKAGTY+EKKLF
Sbjct: 121 MTRDDLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 180

Query: 172 GVTTLDVVRAKTFYAGKANVNVA 194
           GVTTLDVVRAKTFYAGKA V VA
Sbjct: 181 GVTTLDVVRAKTFYAGKAKVPVA 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126896|sp|P17783.1|MDHM_CITLA RecName: Full=Malate dehydrogenase, mitochondrial; Flags: Precursor gi|18297|emb|CAA35239.1| unnamed protein product [Citrullus lanatus subsp. vulgaris]

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 155/174 (89%), Positives = 168/174 (96%)

Query: 21  YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE 80
           +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDIA TPGVAADVGH+NTRSE
Sbjct: 27  FATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSE 86

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
           V GY+G +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPNA+
Sbjct: 87  VTGYVGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNAL 146

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
           +NMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVTTLDVVRAKTFYAGKANV VA
Sbjct: 147 INMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVA 200

Source: Citrullus lanatus subsp. vulgaris

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:2086340	341	mMDH2 "mitochondrial malate de	0.923	0.565	0.803	1.2e-79
TAIR|locus:2009605	341	mMDH1 "mitochondrial malate de	0.923	0.565	0.803	6.8e-79
TAIR|locus:2062240	354	PMDH1 "peroxisomal NAD-malate	0.765	0.451	0.737	4e-58
UNIPROTKB|F1PYG8	338	MDH2 "Malate dehydrogenase" [C	0.851	0.526	0.651	5.1e-58
MGI|MGI:97050	338	Mdh2 "malate dehydrogenase 2,	0.851	0.526	0.651	6.6e-58
TAIR|locus:2144781	363	PMDH2 "peroxisomal NAD-malate	0.765	0.440	0.731	6.6e-58
RGD|619719	338	Mdh2 "malate dehydrogenase 2,	0.851	0.526	0.646	1.1e-57
FB|FBgn0262559	336	Mdh2 "Malate dehydrogenase 2"	0.856	0.532	0.646	1.4e-57
UNIPROTKB|J9NY79	338	J9NY79 "Malate dehydrogenase"	0.856	0.529	0.642	1.4e-57
UNIPROTKB|I3LP41	338	MDH2 "Malate dehydrogenase" [S	0.851	0.526	0.646	1.4e-57

TAIR|locus:2086340 mMDH2 "mitochondrial malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
 Identities = 155/193 (80%), Positives = 177/193 (91%)

Query:     2 RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
             RS ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LYD
Sbjct:     3 RSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLYD 62

Query:    62 IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
             IANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNIN
Sbjct:    63 IANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNIN 122

Query:   122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
             AGIVK+L  AIAKYCP A+VNMISNPVNSTVPIAAE+FKKAGTY+EKKLFGVTTLDVVRA
Sbjct:   123 AGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVRA 182

Query:   182 KTFYAGKANVNVA 194
             +TFYAGK++VNVA
Sbjct:   183 RTFYAGKSDVNVA 195

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IGI

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

TAIR|locus:2009605 mMDH1 "mitochondrial malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 155/193 (80%), Positives = 175/193 (90%)

Query:     2 RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
             RS ++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LYD
Sbjct:     3 RSMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYD 62

Query:    62 IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
             IANTPGVAADVGHINTRSEV GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNIN
Sbjct:    63 IANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNIN 122

Query:   122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
             AGIVK+LC+AIAKYCP+A++NMISNPVNSTVPIAAE+FKKAG Y+EKKLFGVTTLDVVRA
Sbjct:   123 AGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRA 182

Query:   182 KTFYAGKANVNVA 194
             +TFYAGKANV VA
Sbjct:   183 RTFYAGKANVPVA 195

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IMP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

TAIR|locus:2062240 PMDH1 "peroxisomal NAD-malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 118/160 (73%), Positives = 134/160 (83%)

Query:    27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG 86
             P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+AN PGV AD+ H++T + V G++G
Sbjct:    41 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLG 100

Query:    87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
               QL +AL   D+VIIPAGVPRKPGMTRDDLFNINAGIV+ L  AIAK CP AIVN+ISN
Sbjct:   101 QPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISN 160

Query:   147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186
             PVNSTVPIAAEVFKKAGT++ KKL GVT LDVVRA TF A
Sbjct:   161 PVNSTVPIAAEVFKKAGTFDPKKLMGVTMLDVVRANTFVA 200

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

UNIPROTKB|F1PYG8 MDH2 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 118/181 (65%), Positives = 144/181 (79%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPLALL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLALLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP A++ +ISNPVNST+PIA EVFKK G Y+  K+FGVTTLD+VRA TF 
Sbjct:   122 ATLTAACAQHCPEAMICVISNPVNSTIPIATEVFKKHGAYDPNKIFGVTTLDIVRANTFI 181

Query:   186 A 186
             A
Sbjct:   182 A 182

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:97050 Mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Mus musculus (taxid:10090)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 118/181 (65%), Positives = 144/181 (79%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP A+V +I+NPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA TF 
Sbjct:   122 ATLTAACAQHCPEAMVCIIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFV 181

Query:   186 A 186
             A
Sbjct:   182 A 182

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;ISA;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=ISO

GO:0006107 "oxaloacetate metabolic process" evidence=ISO

GO:0006108 "malate metabolic process" evidence=ISO;ISA

GO:0006475 "internal protein amino acid acetylation" evidence=ISO

GO:0006734 "NADH metabolic process" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=ISO;ISA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=ISO;IDA

GO:0043621 "protein self-association" evidence=ISO

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0046554 "malate dehydrogenase (NADP+) activity" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISA;IDA

TAIR|locus:2144781 PMDH2 "peroxisomal NAD-malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 117/160 (73%), Positives = 131/160 (81%)

Query:    27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG 86
             P  KVA+LGAAGGIGQ L+LLMK+NPLVS L LYD+ N PGV ADV H++T + V G++G
Sbjct:    41 PGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLG 100

Query:    87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
               QL  AL   D+VIIPAG+PRKPGMTRDDLF INAGIVK LC  +AK CPNAIVN+ISN
Sbjct:   101 AKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISN 160

Query:   147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186
             PVNSTVPIAAEVFKKAGTY+ KKL GVTTLDV RA TF A
Sbjct:   161 PVNSTVPIAAEVFKKAGTYDPKKLLGVTTLDVARANTFVA 200

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0048046 "apoplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0042579 "microbody" evidence=ISS

RGD|619719 Mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Rattus norvegicus (taxid:10116)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 117/181 (64%), Positives = 143/181 (79%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+P GA   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPVGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP A++ +ISNPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA TF 
Sbjct:   122 ATLTAACAQHCPEAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFV 181

Query:   186 A 186
             A
Sbjct:   182 A 182

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006099 "tricarboxylic acid cycle" evidence=IDA

GO:0006107 "oxaloacetate metabolic process" evidence=IDA

GO:0006108 "malate metabolic process" evidence=ISO;IDA

GO:0006475 "internal protein amino acid acetylation" evidence=ISO;ISS

GO:0006734 "NADH metabolic process" evidence=IDA

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0030060 "L-malate dehydrogenase activity" evidence=ISO;IDA

GO:0043621 "protein self-association" evidence=IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0046554 "malate dehydrogenase (NADP+) activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

FB|FBgn0262559 Mdh2 "Malate dehydrogenase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 117/181 (64%), Positives = 148/181 (81%)

Query:     5 VLRSV-KTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63
             +L+ V K LA   G R +S     + KV V GAAGGIGQPL+LL+K NPLV+ LALYDI 
Sbjct:     1 MLKQVTKQLALQ-GVRTFSVGQQNNYKVTVCGAAGGIGQPLSLLLKQNPLVTDLALYDIV 59

Query:    64 NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAG 123
             +TPGVAAD+ HI+T+S+ AG++G DQLG +L+ SDVV+IPAGVPRKPGMTRDDLFN+NAG
Sbjct:    60 HTPGVAADLSHIDTKSKTAGFIGADQLGDSLKGSDVVVIPAGVPRKPGMTRDDLFNVNAG 119

Query:   124 IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT 183
             I+KD+ ++IAK CP A+V +I+NPVN+ VPIAAE+ KKAG Y+ K+LFGV+TLDVVRA+ 
Sbjct:   120 IIKDISNSIAKNCPKALVAIITNPVNTCVPIAAEILKKAGVYDPKRLFGVSTLDVVRARA 179

Query:   184 F 184
             F
Sbjct:   180 F 180

GO:0005739 "mitochondrion" evidence=IDA;TAS

GO:0030060 "L-malate dehydrogenase activity" evidence=ISS;TAS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035070 "salivary gland histolysis" evidence=IMP

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0035209 "pupal development" evidence=IMP

UNIPROTKB|J9NY79 J9NY79 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 117/182 (64%), Positives = 145/182 (79%)

Query:     8 SVKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64
             ++  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPLALL+K +PLVSRL LYDIA+
Sbjct:     1 TLSALARPAGAALHRSFSTSAQNNAKVAVLGASGGIGQPLALLLKNSPLVSRLTLYDIAH 60

Query:    65 TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI 124
             TPGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTR+DLFN NA I
Sbjct:    61 TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRNDLFNTNASI 120

Query:   125 VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF 184
             V  L +A A++CP A++ +ISNPVNST+PIA EVFKK G Y+  K+FGVTTLD+VRA TF
Sbjct:   121 VATLTAACAQHCPEAMICVISNPVNSTIPIATEVFKKHGAYDPNKIFGVTTLDIVRANTF 180

Query:   185 YA 186
              A
Sbjct:   181 IA 182

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|I3LP41 MDH2 "Malate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 117/181 (64%), Positives = 144/181 (79%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP+A++ +ISNPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA  F 
Sbjct:   122 ATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFV 181

Query:   186 A 186
             A
Sbjct:   182 A 182

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LKA3	MDHM2_ARATH	1, ., 1, ., 1, ., 3, 7	0.7989	0.9282	0.5689	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	1e-125
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	1e-111
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	8e-86
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	5e-80
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	9e-75
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	3e-58
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	3e-51
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	4e-33
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	4e-31
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	6e-31
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	2e-23
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	4e-22
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	3e-20
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	9e-20
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	9e-20
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	1e-18
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	1e-14
cd00704	323	cd00704, MDH, Malate dehydrogenase	1e-14
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	2e-14
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	6e-14
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	3e-13
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	8e-13
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	2e-12
PRK05442	326	PRK05442, PRK05442, malate dehydrogenase; Provisio	2e-10
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	4e-10
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	8e-10
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	1e-09
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	2e-09
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	9e-08
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	3e-07
PLN00112	444	PLN00112, PLN00112, malate dehydrogenase (NADP); P	1e-05
TIGR01757	387	TIGR01757, Malate-DH_plant, malate dehydrogenase,	2e-05

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  356 bits (915), Expect = e-125
 Identities = 131/177 (74%), Positives = 149/177 (84%)

Query: 18  ARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT 77
               +    P  KVAVLGAAGGIGQPL+LLMK+NPLVS L LYDIANTPGVAADV HINT
Sbjct: 8   RACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINT 67

Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
            ++V G++G+DQLG AL+ +D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC A+AK+CP
Sbjct: 68  PAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP 127

Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
           NA+VN+ISNPVNSTVPIAAEV KKAG Y+ KKLFGVTTLDVVRA TF A K  ++ A
Sbjct: 128 NALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGLDPA 184

Length = 323

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  320 bits (824), Expect = e-111
 Identities = 121/165 (73%), Positives = 143/165 (86%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGAAGGIGQPL+LL+KLNPLVS LALYDI NTPGVAAD+ HINT ++V GY+G ++
Sbjct: 2   KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEE 61

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L +AL+ +DVV+IPAGVPRKPGMTRDDLFNINAGIV+DL +A+AK CP A++ +ISNPVN
Sbjct: 62  LKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVN 121

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
           STVPIAAEV KKAG Y+ K+LFGVTTLDVVRA TF A    ++ A
Sbjct: 122 STVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGLDPA 166

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score =  255 bits (654), Expect = 8e-86
 Identities = 114/191 (59%), Positives = 139/191 (72%), Gaps = 13/191 (6%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGAAGGIGQPL+LL+KL P VS L+LYDIA   GVAAD+ HI T + V G+ G + 
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEG 60

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L  AL+ +DVV+IPAGVPRKPGMTRDDLFN+NAGIVKDL +A+A+ CP A++ +I+NPVN
Sbjct: 61  LENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVN 120

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA-------GKANVNVAG------L 196
           STVPIAAEV KK G Y+  KLFGVTTLD+VRA TF A        + NV V G      +
Sbjct: 121 STVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETI 180

Query: 197 LKLLTHKNLVF 207
           + L++      
Sbjct: 181 IPLISQCPGKV 191

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score =  241 bits (616), Expect = 5e-80
 Identities = 101/167 (60%), Positives = 121/167 (72%), Gaps = 3/167 (1%)

Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  D-PTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
           VN+TV IAAEV KKAG Y++ KLFGVTTLDV+R++TF A        
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPG 167

Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score =  228 bits (582), Expect = 9e-75
 Identities = 106/163 (65%), Positives = 127/163 (77%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGAAGGIGQPL+LL+K NP VS L+LYDI   PGVAAD+ HI+T ++V GY   + 
Sbjct: 10  KVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGEL 69

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             +AL  +D+V+I AGVPRKPGMTRDDLFN NA IV+DL +A+A   P AIV ++SNPVN
Sbjct: 70  WEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVN 129

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
           STVPIAAE  KKAG Y+ +KLFGVTTLDVVRA+ F A    +N
Sbjct: 130 STVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGMN 172

Length = 321

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  179 bits (457), Expect = 3e-58
 Identities = 71/146 (48%), Positives = 90/146 (61%), Gaps = 6/146 (4%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTRSEVAGYMG 86
            KVAV+GA GG+G  LA  + L  L   L L DI      GVA D+ H +T   V G +G
Sbjct: 1   VKVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVG 60

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
            D   +AL+D+DVV+I AGVPRKPGMTR DL N NAGI KD+  AIAK  P+AIV ++SN
Sbjct: 61  GDD-YEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSN 119

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFG 172
           PV+    IA +V   +G   E+ +  
Sbjct: 120 PVDILTYIAWKV---SGLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  167 bits (425), Expect = 3e-51
 Identities = 71/168 (42%), Positives = 93/168 (55%), Gaps = 6/168 (3%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
            KVAV+GA G +G  LA L+ L  L S L L DI      GVA D+ H          + 
Sbjct: 1   MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT 59

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
            D   + L+ +D+V+I AGVPRKPGMTR DL   NA IVKD+  AIAKY P+AIV +++N
Sbjct: 60  GDGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTN 119

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
           PV+    IA +    +G    + +   T LD  R +TF A K  V+  
Sbjct: 120 PVDILTYIAMKF---SGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPK 164

Length = 313

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  120 bits (303), Expect = 4e-33
 Identities = 66/171 (38%), Positives = 99/171 (57%), Gaps = 17/171 (9%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGH----INTRSEVAG 83
           K++++GA G +G  LA L+ L  L   + L+DI    P G A D+          +++ G
Sbjct: 4   KISIIGA-GNVGATLAHLLALKELGD-VVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG 61

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
              ND   + +  SDVV+I AGVPRKPGM+RDDL  INA I+KD+   I KY P+AIV +
Sbjct: 62  --TNDY--EDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIV 117

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT-LDVVRAKTFYAGKANVNV 193
           ++NPV++   +A     K   + + ++ G+   LD  R +TF A + NV+V
Sbjct: 118 VTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSV 164

Length = 307

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  114 bits (289), Expect = 4e-31
 Identities = 63/171 (36%), Positives = 94/171 (54%), Gaps = 17/171 (9%)

Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGH----INTRSEVAGY 84
           ++++GA G +G  LA L+ L  L   + L DI    P G A D+      + + ++V G 
Sbjct: 1   ISIIGA-GNVGATLAQLLALKELGD-VVLLDIVEGLPQGKALDISQAAPILGSDTKVTG- 57

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144
             ND   + +  SDVV+I AG+PRKPGM+RDDL   NA IVK++   I KY PNAIV ++
Sbjct: 58  -TNDY--EDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114

Query: 145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVA 194
           +NP++        V  KA  +   ++ G+   LD  R + F A +  V+V 
Sbjct: 115 TNPLDVMT----YVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVK 161

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  113 bits (285), Expect = 6e-31
 Identities = 60/165 (36%), Positives = 83/165 (50%), Gaps = 8/165 (4%)

Query: 31  VAVLGAAGGIGQPLALLM--KLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMG 86
           +AV+GA G +G  LA  +      L   L LYDI      GVA D+              
Sbjct: 1   IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI 60

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
            D   +A +D+DVVII AGV RKPGM R DL   N  IVK++   I KY P+A + ++SN
Sbjct: 61  TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANV 191
           PV+    I   +  +     ++K+ G+ TLD +R +   A K  V
Sbjct: 121 PVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLGV 161

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score = 95.2 bits (237), Expect = 2e-23
 Identities = 57/166 (34%), Positives = 88/166 (53%), Gaps = 9/166 (5%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
           K++++GA G IG  +ALL+    L   + LYD+      G A D+ H +T       +  
Sbjct: 7   KISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG 64

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
               + ++DSDVV+I AGV RK  MTR+DL  IN  I+K +  ++ KYCPNA V  ++NP
Sbjct: 65  TNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNP 124

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYAGKANVN 192
           ++       +VF++       K+ G+   LD  R +   A K  V+
Sbjct: 125 LD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVS 166

Length = 319

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score = 90.9 bits (226), Expect = 4e-22
 Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 35/182 (19%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNP------LVSR-----------LALYDIANTPGVAADV 72
           KV+++GA+G +G   ALL+          L+SR           L +YD     G+ A++
Sbjct: 2   KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI 61

Query: 73  GHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI 132
              +  S+VAG             SD+VII AGVPRK GM+R DL   NA IVK     I
Sbjct: 62  KISSDLSDVAG-------------SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI 108

Query: 133 AKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT-LDVVRAKTFYAGKANV 191
           A++ P+  + +++NPV+     A    K++G +++ ++FG+ T LD +R K   A   NV
Sbjct: 109 AEFAPDTKILVVTNPVDVMTYKA---LKESG-FDKNRVFGLGTHLDSLRFKVAIAKHFNV 164

Query: 192 NV 193
           ++
Sbjct: 165 HI 166

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score = 86.2 bits (214), Expect = 3e-20
 Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 17/169 (10%)

Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH----INTRSEVAGY 84
           + ++GA G +G  +A  +    L S L L D+      G A D+ H    + T + V G 
Sbjct: 1   ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGG 59

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144
              D       D+D+V+I AG PRKPG TR DL N NA I++ + + + KY P+AI+ ++
Sbjct: 60  DYAD-----AADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVV 114

Query: 145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           SNPV+    I   V +K     + ++ G  T LD  R ++  A K +V+
Sbjct: 115 SNPVD----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVD 159

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score = 85.1 bits (211), Expect = 9e-20
 Identities = 62/181 (34%), Positives = 100/181 (55%), Gaps = 22/181 (12%)

Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TR 78
            +  RK++++G+ G IG  +A L+ L  L   + L+DI  N P G A D+ H N    + 
Sbjct: 3   MIKRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSN 60

Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIA 133
           S+V G   N+   + +  SDVVI+ AG+ ++PG +     RDDL  +NA I+ ++   I 
Sbjct: 61  SKVIG--TNNY--EDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIK 116

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYAGKANVN 192
           KYCPNA V +I+NP++  V    ++ ++     + K+ G+   LD  R +T+ A K  VN
Sbjct: 117 KYCPNAFVIVITNPLDVMV----KLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVN 172

Query: 193 V 193
            
Sbjct: 173 P 173

Length = 321

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score = 84.5 bits (209), Expect = 9e-20
 Identities = 60/173 (34%), Positives = 98/173 (56%), Gaps = 19/173 (10%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAAD------VGHINTRSE 80
           +K++V+GA G +G   A  +    L + L L D+      G A D      VG  +T+  
Sbjct: 2   KKISVIGA-GFVGATTAFRLAEKEL-ADLVLLDVVEGIPQGKALDMYEASPVGGFDTK-- 57

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
           V G   N+    A  +SD+V+I AG+PRKPGM+R+DL ++NAGIV+++   I ++ PN I
Sbjct: 58  VTG--TNNYADTA--NSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPI 113

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
           + ++SNP+++   +A +   K+G   E+ +     LD  R +TF A +  V+V
Sbjct: 114 IVVVSNPLDAMTYVAWQ---KSGFPKERVIGQAGVLDSARFRTFIAMELGVSV 163

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score = 81.4 bits (202), Expect = 1e-18
 Identities = 47/127 (37%), Positives = 65/127 (51%), Gaps = 15/127 (11%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH----INTRSEVA 82
            KVA++GA G +G   A  + L  L S + L DI  A   G A D+ H    +      A
Sbjct: 1   MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA 59

Query: 83  G-YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           G Y          + +DVV+I AG  +KPG TR DL   N  I K++   I KY P+AI+
Sbjct: 60  GDY-------ADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAIL 112

Query: 142 NMISNPV 148
            +++NPV
Sbjct: 113 LVVTNPV 119

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 70.6 bits (174), Expect = 1e-14
 Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 9/167 (5%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
           RKV ++GA G +G   A  +    +   L L DI N      +   +             
Sbjct: 1   RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDI-NEEKAEGEALDLEDALAFLPSPVKI 58

Query: 89  QLG--QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
           + G     +D+D+V+I AG P+KPG TR DL   NA I+K +   I     + I  + SN
Sbjct: 59  KAGDYSDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           PV+    +   V +K     + ++ G  T+LD  R +   A K NV+
Sbjct: 119 PVD----VITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVD 161

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 59/180 (32%), Positives = 74/180 (41%), Gaps = 26/180 (14%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
            V + GAAG IG  L        L     P++  L L DI   P + A  G      E  
Sbjct: 2   HVLITGAAGQIGYNLLFLIASGELFGDDQPVI--LHLLDI--PPAMKALEG---VVMELQ 54

Query: 81  ------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                 + G +      +A +D DV I+    PRKPGM R DL   NA I K+   A+ K
Sbjct: 55  DCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNK 114

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
              P   V ++ NP N+   IA    K A     K    +T LD  RAK   A K  V V
Sbjct: 115 VAKPTVKVLVVGNPANTNALIAL---KNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRV 171

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 69.9 bits (172), Expect = 2e-14
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 20/165 (12%)

Query: 37  AGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEV--AGYMGND 88
           AG +G   A  +    +   + L DI      G A D+ H    + T  ++    Y    
Sbjct: 4   AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDY---- 59

Query: 89  QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148
                 +D+D+V+I AG P+KPG TR +L   N  I+K +   + K   + I  + +NPV
Sbjct: 60  ---SDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPV 116

Query: 149 NSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           +    I   V  K   + + ++ G  T LD  R +   A K  V+
Sbjct: 117 D----ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVD 157

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 68.5 bits (168), Expect = 6e-14
 Identities = 58/184 (31%), Positives = 81/184 (44%), Gaps = 33/184 (17%)

Query: 30  KVAVLGAAGGIG-QPLALLMKLNPLVSRLALYDIANTPGVAA----DVGH-------INT 77
           K+ V+GA G +G   L   + L  L S + L D+    GVA     D  H        NT
Sbjct: 1   KLVVIGA-GHVGSAVLNYALALG-LFSEIVLIDV--NEGVAEGEALDFHHATALTYSTNT 56

Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT--RDDLFNINAGIVKDLCSAIAKY 135
           +     Y           D+D+++I AG    PG T  R DL   NA I++++   I K 
Sbjct: 57  KIRAGDY-------DDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV 109

Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANV--- 191
              A++ +I+NP++  V IAA  F     Y   K+ G  T LD  R +   A K  V   
Sbjct: 110 TKEAVIILITNPLDIAVYIAATEFD----YPANKVIGTGTMLDTARLRRIVADKYGVDPK 165

Query: 192 NVAG 195
           NV G
Sbjct: 166 NVTG 169

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 59/181 (32%), Positives = 77/181 (42%), Gaps = 26/181 (14%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        L  K  P+V  L L DI         V       E  
Sbjct: 5   RVAVTGAAGQIGYSLLFRIASGELFGKDQPVV--LHLLDIPPAMKALEGV-----AMELE 57

Query: 81  ------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                 +AG +      +A +D D  ++    PRKPGM R DL + N  I K+   A+ K
Sbjct: 58  DCAFPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNK 117

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
               +  V ++ NP N+   IA+   K A     K    +T LD  RAK   A KA V V
Sbjct: 118 VAKKDVKVLVVGNPANTNALIAS---KNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPV 174

Query: 194 A 194
           +
Sbjct: 175 S 175

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 65.7 bits (161), Expect = 8e-13
 Identities = 52/184 (28%), Positives = 73/184 (39%), Gaps = 34/184 (18%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSR-----------LALYDIANTPGVAADVGHINTR 78
           +V V GAAG I   L       P++++           L L DI         V      
Sbjct: 4   RVLVTGAAGQIAYSLL------PMIAKGDVFGPDQPVILHLLDIPPALKALEGV-----V 52

Query: 79  SE--------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCS 130
            E        +   +      +A +D DV I+   +PRK GM R DL   N  I K+   
Sbjct: 53  MELQDCAFPLLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGE 112

Query: 131 AIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKA 189
           A+ KY   N  V ++ NP N+   I     K A +  ++    +T LD  RAK+  A K 
Sbjct: 113 ALDKYAKKNVKVLVVGNPANTNALILL---KYAPSIPKENFTALTRLDHNRAKSQIALKL 169

Query: 190 NVNV 193
            V V
Sbjct: 170 GVPV 173

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 15/127 (11%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHI-----NTRSEV 81
            KV ++G  G +G   A  +    +   L + DI      G A D+ H       T+   
Sbjct: 7   NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA 65

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
             Y          +D+D+V+I AG P+KPG TR DL   N  I K +   +     + I 
Sbjct: 66  GDY-------SDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIF 118

Query: 142 NMISNPV 148
            + SNPV
Sbjct: 119 LVASNPV 125

Length = 315

>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 58/186 (31%), Positives = 80/186 (43%), Gaps = 26/186 (13%)

Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        +L K  P+   L L +I   P + A  G      E  
Sbjct: 6   RVAVTGAAGQIGYSLLFRIASGDMLGKDQPV--ILQLLEI--PPALKALEG---VVMELD 58

Query: 81  ------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                 +AG +  D    A +D+DV ++    PR PGM R DL   N  I      A+ +
Sbjct: 59  DCAFPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNE 118

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
               +  V ++ NP N+   IA    K A     +    +T LD  RA +  A KA V V
Sbjct: 119 VAARDVKVLVVGNPANTNALIAM---KNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPV 175

Query: 194 AGLLKL 199
           A + K+
Sbjct: 176 ADIKKM 181

Length = 326

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 58.0 bits (140), Expect = 4e-10
 Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNA 139
           +AG +   +L +A +D D   + A VP KPG  R DL   N  I K    A+++Y  P  
Sbjct: 45  LAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTV 104

Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
            V +I NPVN+   +A      A   + +    +  LD  RA +  A K  V V
Sbjct: 105 KVLVIGNPVNTNCLVA---MLHAPKLSAENFSSLCMLDHNRAVSRIASKLKVPV 155

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 56.8 bits (137), Expect = 8e-10
 Identities = 53/180 (29%), Positives = 72/180 (40%), Gaps = 26/180 (14%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV- 81
           +V V GAAG IG  L        +L K  P++  L L DI     V   V       E+ 
Sbjct: 1   RVVVTGAAGQIGYALLPMIARGRMLGKDQPII--LHLLDIPPAMKVLEGV-----VMELM 53

Query: 82  -------AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                   G +       A  D DV I+    PRK GM R DL + N  I K+   A+ K
Sbjct: 54  DCAFPLLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDK 113

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
               +  V ++ NP N+   + +     A +   K    +T LD  RA    A +A V V
Sbjct: 114 LAKKDCKVLVVGNPANTNALVLSNY---APSIPPKNFSALTRLDHNRALAQVAERAGVPV 170

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 53/187 (28%), Positives = 74/187 (39%), Gaps = 28/187 (14%)

Query: 30  KVAVLGAAGGIGQPLALLMKL---------NPLVSRLALYDIANT----PGVA---ADVG 73
           +VAV GAAG IG   +LL ++          P++  L L ++        GVA    D  
Sbjct: 4   RVAVTGAAGQIGY--SLLFRIASGEMFGPDQPVI--LQLLELPQALKALEGVAMELEDCA 59

Query: 74  HINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
                  V      D    A +D+D  ++    PR PGM R DL   N  I      A+ 
Sbjct: 60  FPLLAEIVIT----DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALN 115

Query: 134 KYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
                +  V ++ NP N+   IA    K A          +T LD  RAK+  A KA V 
Sbjct: 116 DVASRDVKVLVVGNPCNTNALIAM---KNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVP 172

Query: 193 VAGLLKL 199
           V  +  +
Sbjct: 173 VTDVKNM 179

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 21/172 (12%)

Query: 30  KVAVLGA-AGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           KV V+G    G+   +++L K   L   L L D+      G A D+ H       + ++ 
Sbjct: 5   KVTVVGVGQVGMACAISILAK--GLADELVLVDVVEDKLKGEAMDLQH------GSAFLK 56

Query: 87  N-----DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           N     D+      +S VVI+ AG  +  G +R DL   N  I K +   + KY PNAI+
Sbjct: 57  NPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAIL 116

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
            ++SNPV+    I   V  K     + ++ G    LD  R +   A +  V 
Sbjct: 117 LVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVA 164

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 50.9 bits (122), Expect = 9e-08
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 4/104 (3%)

Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS 150
           +A +  ++ ++  G PRK GM R D+ + N  I K   SA+ K+  P+  V +++NP N+
Sbjct: 54  EACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANT 113

Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
              I  E    A +  EK +  +T LD  RA    + +  V V+
Sbjct: 114 NALILKEF---APSIPEKNITCLTRLDHNRALGQISERLGVPVS 154

Length = 309

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 16/179 (8%)

Query: 22  SSESVPDR---KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGH-- 74
           SS   P R   KV+V+G  G +G  +A  +    L   LAL D+      G   D+ H  
Sbjct: 28  SSPPSPTRRHTKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA 86

Query: 75  -INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
               R+++               SD+ I+ AG  + PG +R +L   N  + + +   +A
Sbjct: 87  AFLPRTKILA----STDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELA 142

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
           KY P+ I+ ++SNPV+    +A   +K +G    + +   T LD  R +   A   +VN
Sbjct: 143 KYSPDTILLIVSNPVDVLTYVA---WKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVN 198

Length = 350

>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 95  EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYCPNAIVNMISNPVNSTVP 153
           +D++  ++    PR PGM R DL +IN  I  +   A+      N  V ++ NP N+   
Sbjct: 175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNAL 234

Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANV 191
           I     K A     K    +T LD  RAK   A KA V
Sbjct: 235 IC---LKNAPNIPAKNFHALTRLDENRAKCQLALKAGV 269

Length = 444

>gnl|CDD|130818 TIGR01757, Malate-DH_plant, malate dehydrogenase, NADP-dependent

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 37/113 (32%), Positives = 49/113 (43%), Gaps = 12/113 (10%)

Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS 150
           +  ED+D  ++    PR PGM R DL +IN  I  D   A+      N  V ++ NP N+
Sbjct: 116 EVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNT 175

Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK--------TFYAGKANVNVAG 195
              IA    K A     K    +T LD  RAK         FY   +NV + G
Sbjct: 176 NALIA---MKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWG 225

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. Length = 387

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
PLN00106	323	malate dehydrogenase	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
PLN02602	350	lactate dehydrogenase	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	99.97
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	99.97
KOG1496	332	consensus Malate dehydrogenase [Energy production	99.97
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	99.96
PLN00135	309	malate dehydrogenase	99.95
PRK15076	431	alpha-galactosidase; Provisional	99.89
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	99.87
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	99.87
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.83
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.82
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.81
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.76
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	99.22
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	99.2
PLN02166	436	dTDP-glucose 4,6-dehydratase	99.15
PLN02427	386	UDP-apiose/xylose synthase	99.1
CHL00194	317	ycf39 Ycf39; Provisional	99.09
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	99.08
PLN02206	442	UDP-glucuronate decarboxylase	99.07
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.07
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.07
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.05
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	99.04
PLN02650	351	dihydroflavonol-4-reductase	99.01
PLN00198	338	anthocyanidin reductase; Provisional	99.0
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	98.99
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	98.99
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.97
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	98.96
PLN02214	342	cinnamoyl-CoA reductase	98.95
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.95
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.94
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	98.92
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	98.9
PLN02572	442	UDP-sulfoquinovose synthase	98.89
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	98.88
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	98.88
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	98.87
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	98.87
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	98.87
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	98.86
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.86
PLN02583	297	cinnamoyl-CoA reductase	98.85
PLN02695	370	GDP-D-mannose-3',5'-epimerase	98.85
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	98.84
PLN02896	353	cinnamyl-alcohol dehydrogenase	98.83
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	98.82
PLN03209	576	translocon at the inner envelope of chloroplast su	98.81
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	98.8
PLN02778	298	3,5-epimerase/4-reductase	98.79
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.78
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.78
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	98.77
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.77
PRK10675	338	UDP-galactose-4-epimerase; Provisional	98.77
PLN02653	340	GDP-mannose 4,6-dehydratase	98.75
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	98.75
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	98.74
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	98.73
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	98.73
PLN02260	668	probable rhamnose biosynthetic enzyme	98.73
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	98.72
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.72
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.72
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	98.72
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	98.71
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.69
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.69
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.68
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.68
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.68
COG2910	211	Putative NADH-flavin reductase [General function p	98.68
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	98.67
PLN02686	367	cinnamoyl-CoA reductase	98.67
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.67
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	98.67
PRK06194	287	hypothetical protein; Provisional	98.65
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.65
PRK07201	657	short chain dehydrogenase; Provisional	98.64
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	98.64
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.64
PLN02240	352	UDP-glucose 4-epimerase	98.62
PRK12320	699	hypothetical protein; Provisional	98.59
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.59
PRK05865	854	hypothetical protein; Provisional	98.59
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.58
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.58
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.57
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.56
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.53
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	98.53
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.51
PRK12829	264	short chain dehydrogenase; Provisional	98.5
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	98.48
PRK06180	277	short chain dehydrogenase; Provisional	98.46
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	98.46
PLN02996	491	fatty acyl-CoA reductase	98.46
PRK08267	260	short chain dehydrogenase; Provisional	98.45
PRK06482	276	short chain dehydrogenase; Provisional	98.44
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	98.44
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	98.44
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.41
PRK07806	248	short chain dehydrogenase; Provisional	98.39
PLN02253	280	xanthoxin dehydrogenase	98.39
PRK06179	270	short chain dehydrogenase; Provisional	98.38
PRK05993	277	short chain dehydrogenase; Provisional	98.38
PRK06182	273	short chain dehydrogenase; Validated	98.37
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	98.37
PLN02260	668	probable rhamnose biosynthetic enzyme	98.35
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	98.34
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.33
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	98.33
COG0300	265	DltE Short-chain dehydrogenases of various substra	98.33
PRK12828	239	short chain dehydrogenase; Provisional	98.32
PRK07067	257	sorbitol dehydrogenase; Provisional	98.32
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	98.32
PRK07102	243	short chain dehydrogenase; Provisional	98.32
PRK07326	237	short chain dehydrogenase; Provisional	98.32
TIGR01746	367	Thioester-redct thioester reductase domain. It has	98.32
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.32
PRK12937	245	short chain dehydrogenase; Provisional	98.31
PLN02503	605	fatty acyl-CoA reductase 2	98.31
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	98.3
PRK10538	248	malonic semialdehyde reductase; Provisional	98.3
PRK12746	254	short chain dehydrogenase; Provisional	98.3
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.3
PRK07774	250	short chain dehydrogenase; Provisional	98.3
PRK07523	255	gluconate 5-dehydrogenase; Provisional	98.3
PRK08219	227	short chain dehydrogenase; Provisional	98.29
PRK08278	273	short chain dehydrogenase; Provisional	98.29
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.29
PRK12367	245	short chain dehydrogenase; Provisional	98.29
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	98.29
PRK07856	252	short chain dehydrogenase; Provisional	98.29
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.28
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	98.27
PRK05717	255	oxidoreductase; Validated	98.27
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.27
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.27
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.25
PRK07069	251	short chain dehydrogenase; Validated	98.25
PRK08643	256	acetoin reductase; Validated	98.24
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.24
PRK12827	249	short chain dehydrogenase; Provisional	98.23
PRK12939	250	short chain dehydrogenase; Provisional	98.23
PRK06924	251	short chain dehydrogenase; Provisional	98.23
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	98.23
PRK06172	253	short chain dehydrogenase; Provisional	98.22
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.21
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	98.21
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	98.21
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.21
PRK08213	259	gluconate 5-dehydrogenase; Provisional	98.2
PRK08340	259	glucose-1-dehydrogenase; Provisional	98.2
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.19
PLN00016	378	RNA-binding protein; Provisional	98.19
PRK05693	274	short chain dehydrogenase; Provisional	98.19
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	98.19
PRK09135	249	pteridine reductase; Provisional	98.19
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.19
PRK07825	273	short chain dehydrogenase; Provisional	98.19
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	98.19
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	98.18
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.18
PRK06841	255	short chain dehydrogenase; Provisional	98.18
PRK06398	258	aldose dehydrogenase; Validated	98.17
PRK05875	276	short chain dehydrogenase; Provisional	98.17
PRK07453	322	protochlorophyllide oxidoreductase; Validated	98.17
PRK06101	240	short chain dehydrogenase; Provisional	98.17
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.17
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.16
PRK08265	261	short chain dehydrogenase; Provisional	98.16
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.16
PRK07814	263	short chain dehydrogenase; Provisional	98.16
PRK07890	258	short chain dehydrogenase; Provisional	98.16
PRK06181	263	short chain dehydrogenase; Provisional	98.15
PRK06914	280	short chain dehydrogenase; Provisional	98.15
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	98.14
PRK05866	293	short chain dehydrogenase; Provisional	98.13
PRK05884	223	short chain dehydrogenase; Provisional	98.13
PRK07024	257	short chain dehydrogenase; Provisional	98.13
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	98.12
PRK09291	257	short chain dehydrogenase; Provisional	98.12
PRK08264	238	short chain dehydrogenase; Validated	98.12
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	98.12
PRK07023	243	short chain dehydrogenase; Provisional	98.12
PRK06196	315	oxidoreductase; Provisional	98.11
PRK08263	275	short chain dehydrogenase; Provisional	98.11
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.11
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.11
PRK07074	257	short chain dehydrogenase; Provisional	98.11
PRK12742	237	oxidoreductase; Provisional	98.11
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	98.11
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.1
PRK06138	252	short chain dehydrogenase; Provisional	98.1
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.1
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	98.1
PRK09186	256	flagellin modification protein A; Provisional	98.1
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	98.09
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	98.09
PRK06953	222	short chain dehydrogenase; Provisional	98.09
PRK07577	234	short chain dehydrogenase; Provisional	98.09
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.08
PRK06197	306	short chain dehydrogenase; Provisional	98.07
PRK07454	241	short chain dehydrogenase; Provisional	98.07
PRK12935	247	acetoacetyl-CoA reductase; Provisional	98.06
PRK05854	313	short chain dehydrogenase; Provisional	98.06
PRK09134	258	short chain dehydrogenase; Provisional	98.06
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	98.05
PRK07832	272	short chain dehydrogenase; Provisional	98.05
PRK06057	255	short chain dehydrogenase; Provisional	98.04
PRK08085	254	gluconate 5-dehydrogenase; Provisional	98.04
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.04
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	98.04
PRK08251	248	short chain dehydrogenase; Provisional	98.04
PRK07109	334	short chain dehydrogenase; Provisional	98.03
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	98.03
PRK12747	252	short chain dehydrogenase; Provisional	98.03
PRK06124	256	gluconate 5-dehydrogenase; Provisional	98.02
PRK07576	264	short chain dehydrogenase; Provisional	98.02
PRK05876	275	short chain dehydrogenase; Provisional	98.02
PRK06500	249	short chain dehydrogenase; Provisional	98.02
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	98.02
PRK05650	270	short chain dehydrogenase; Provisional	98.01
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	98.01
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.0
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	98.0
PRK07063	260	short chain dehydrogenase; Provisional	98.0
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	98.0
PRK07060	245	short chain dehydrogenase; Provisional	97.99
PRK06128	300	oxidoreductase; Provisional	97.99
PRK12744	257	short chain dehydrogenase; Provisional	97.98
PRK08589	272	short chain dehydrogenase; Validated	97.98
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.97
PLN02780	320	ketoreductase/ oxidoreductase	97.97
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.97
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	97.96
PRK06701	290	short chain dehydrogenase; Provisional	97.96
PRK07904	253	short chain dehydrogenase; Provisional	97.96
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.96
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.96
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	97.95
PRK07097	265	gluconate 5-dehydrogenase; Provisional	97.95
TIGR02415	254	23BDH acetoin reductases. One member of this famil	97.95
PRK07578	199	short chain dehydrogenase; Provisional	97.94
PRK07478	254	short chain dehydrogenase; Provisional	97.92
PRK08226	263	short chain dehydrogenase; Provisional	97.92
PRK09072	263	short chain dehydrogenase; Provisional	97.92
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.92
PRK08339	263	short chain dehydrogenase; Provisional	97.91
PRK08655	437	prephenate dehydrogenase; Provisional	97.91
PRK06139	330	short chain dehydrogenase; Provisional	97.9
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	97.9
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.9
PRK07985	294	oxidoreductase; Provisional	97.89
PRK12824	245	acetoacetyl-CoA reductase; Provisional	97.88
PRK08628	258	short chain dehydrogenase; Provisional	97.87
PRK06523	260	short chain dehydrogenase; Provisional	97.87
PRK08703	239	short chain dehydrogenase; Provisional	97.87
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.86
PRK08177	225	short chain dehydrogenase; Provisional	97.86
PRK05867	253	short chain dehydrogenase; Provisional	97.86
PRK14982	340	acyl-ACP reductase; Provisional	97.86
PRK06949	258	short chain dehydrogenase; Provisional	97.85
PRK09009	235	C factor cell-cell signaling protein; Provisional	97.85
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.85
PRK07035	252	short chain dehydrogenase; Provisional	97.85
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.84
PRK07677	252	short chain dehydrogenase; Provisional	97.84
PRK05872	296	short chain dehydrogenase; Provisional	97.84
PRK06483	236	dihydromonapterin reductase; Provisional	97.83
PRK09242	257	tropinone reductase; Provisional	97.83
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.83
PRK08017	256	oxidoreductase; Provisional	97.82
PRK12743	256	oxidoreductase; Provisional	97.81
PRK05855	582	short chain dehydrogenase; Validated	97.81
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	97.81
PRK08936	261	glucose-1-dehydrogenase; Provisional	97.8
PRK06114	254	short chain dehydrogenase; Provisional	97.8
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	97.8
PRK06198	260	short chain dehydrogenase; Provisional	97.79
PLN02688	266	pyrroline-5-carboxylate reductase	97.79
PRK07417	279	arogenate dehydrogenase; Reviewed	97.79
PRK06947	248	glucose-1-dehydrogenase; Provisional	97.79
PRK08277	278	D-mannonate oxidoreductase; Provisional	97.79
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.78
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.78
PRK06123	248	short chain dehydrogenase; Provisional	97.78
PRK06484	520	short chain dehydrogenase; Validated	97.77
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.75
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.74
PRK07775	274	short chain dehydrogenase; Provisional	97.74
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.73
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.73
PRK12938	246	acetyacetyl-CoA reductase; Provisional	97.72
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.72
PRK07680	273	late competence protein ComER; Validated	97.72
PRK08324	681	short chain dehydrogenase; Validated	97.72
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	97.71
PRK06545	359	prephenate dehydrogenase; Validated	97.7
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.69
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.69
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.68
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	97.68
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	97.68
PRK06940	275	short chain dehydrogenase; Provisional	97.68
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.67
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.67
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.66
PRK07062	265	short chain dehydrogenase; Provisional	97.66
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	97.65
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.65
PRK07201	657	short chain dehydrogenase; Provisional	97.65
PLN02256	304	arogenate dehydrogenase	97.64
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.64
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.63
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	97.63
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	97.62
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.61
PRK12480	330	D-lactate dehydrogenase; Provisional	97.6
PRK07041	230	short chain dehydrogenase; Provisional	97.6
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.58
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.57
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.57
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.57
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.56
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	97.55
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	97.55
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	97.55
PRK06125	259	short chain dehydrogenase; Provisional	97.54
PRK08818	370	prephenate dehydrogenase; Provisional	97.54
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.54
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.53
PRK13243	333	glyoxylate reductase; Reviewed	97.53
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	97.51
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	97.51
PRK05599	246	hypothetical protein; Provisional	97.5
PRK08605	332	D-lactate dehydrogenase; Validated	97.49
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.48
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	97.47
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.46
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	97.46
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.46
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.45
PRK06484	520	short chain dehydrogenase; Validated	97.45
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	97.43
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.43
PRK08303	305	short chain dehydrogenase; Provisional	97.41
PLN02712	667	arogenate dehydrogenase	97.41
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	97.4
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.39
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.39
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	97.39
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.38
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	97.37
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	97.37
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.36
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	97.36
PRK07574	385	formate dehydrogenase; Provisional	97.36
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.35
PRK07831	262	short chain dehydrogenase; Provisional	97.35
PRK07791	286	short chain dehydrogenase; Provisional	97.34
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.33
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	97.33
PRK08507	275	prephenate dehydrogenase; Validated	97.32
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	97.32
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	97.32
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	97.31
PLN02383	344	aspartate semialdehyde dehydrogenase	97.31
PRK08862	227	short chain dehydrogenase; Provisional	97.31
PLN02712	667	arogenate dehydrogenase	97.3
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	97.3
PRK09496	453	trkA potassium transporter peripheral membrane com	97.28
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	97.28
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	97.28
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	97.28
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	97.26
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.26
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	97.24
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.23
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.21
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.21
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.2
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	97.2
KOG1208	314	consensus Dehydrogenases with different specificit	97.2
COG3320	382	Putative dehydrogenase domain of multifunctional n	97.2
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	97.19
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.19
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	97.19
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	97.18
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	97.16
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.16
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	97.16
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	97.15
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.15
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	97.15
PRK05479	330	ketol-acid reductoisomerase; Provisional	97.14
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.14
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.13
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	97.12
PRK10669	558	putative cation:proton antiport protein; Provision	97.12
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	97.12
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	97.12
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.11
PLN03139	386	formate dehydrogenase; Provisional	97.1
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.1
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	97.09
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	97.09
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	97.08
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	97.07
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	97.07
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	97.06
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.06
KOG0409	327	consensus Predicted dehydrogenase [General functio	97.05
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	97.05
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.05
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	97.04
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	97.03
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.02
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	97.02
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.02
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.01
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	97.0
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	97.0
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	97.0
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.97
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.97
PRK09496	453	trkA potassium transporter peripheral membrane com	96.96
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.94
PLN02928	347	oxidoreductase family protein	96.94
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	96.94
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.93
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.92
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	96.92
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.91
PLN00015	308	protochlorophyllide reductase	96.91
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.9
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.9
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.88
PRK06407	301	ornithine cyclodeaminase; Provisional	96.87
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	96.84
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	96.81
PRK09620	229	hypothetical protein; Provisional	96.81
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.8
PRK07340	304	ornithine cyclodeaminase; Validated	96.79
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.78
KOG2865	391	consensus NADH:ubiquinone oxidoreductase, NDUFA9/3	96.78
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	96.77
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.76
PRK06436	303	glycerate dehydrogenase; Provisional	96.75
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	96.75
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	96.75
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.75
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.72
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	96.72
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	96.72
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.69
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.68
PLN02494	477	adenosylhomocysteinase	96.68
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.67
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	96.67
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.67
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.67
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.66
PRK06141	314	ornithine cyclodeaminase; Validated	96.65
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.63
PRK06932	314	glycerate dehydrogenase; Provisional	96.63
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	96.62
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	96.61

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=8.6e-40  Score=280.05  Aligned_cols=181  Identities=67%  Similarity=1.027  Sum_probs=164.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      |||+||||+|+||+++++.|+..++.+|++|+|++..+++++||.|...+..+.....++|++++++|||+||++||.|+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            69999999999999999999999998999999998667889999998744445432123456799999999999999999


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEehhhHHHHHHHHHHH
Q 028437          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGK  188 (209)
Q Consensus       109 ~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~~lds~r~~~~la~~  188 (209)
                      +||++|.|++..|.++++++++.+.+++|++++|++|||+|.+++++++++++.+++|++|++|+|.|||+|+++++|++
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~  160 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL  160 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888888999999999999999999999999999999999


Q ss_pred             cCCCCCCeeEEEE--e-ccccccC
Q 028437          189 ANVNVAGLLKLLT--H-KNLVFIV  209 (209)
Q Consensus       189 l~v~~~~v~~~~i--~-g~~~~~~  209 (209)
                      +|+++++|+++++  | |+++|++
T Consensus       161 l~v~~~~V~~~v~GeHsGds~vp~  184 (310)
T cd01337         161 LGLDPAKVNVPVIGGHSGVTILPL  184 (310)
T ss_pred             hCcCHHHEEEEEEecCCCCceecc
Confidence            9999999998888  7 7888863

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1e-38  Score=273.82  Aligned_cols=180  Identities=61%  Similarity=0.952  Sum_probs=162.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRK  109 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~~  109 (209)
                      ||+|+||+|.||+++++.|+..++++|++|+|+++..++++||.|......+..+.+.++++++++|||+||+++|.+++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            79999999999999999999999989999999987778889999976433444322223467899999999999999999


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEehhhHHHHHHHHHHHc
Q 028437          110 PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKA  189 (209)
Q Consensus       110 ~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~~lds~r~~~~la~~l  189 (209)
                      +|++|.+++..|.++++++++.+.+++|++++|++|||+|.+++++++++++.++||++|+||+|.||++|+++++|+++
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l  160 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK  160 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999898999999999999999999999999999999999999


Q ss_pred             CCCCCCeeEEEE--ecc-ccccC
Q 028437          190 NVNVAGLLKLLT--HKN-LVFIV  209 (209)
Q Consensus       190 ~v~~~~v~~~~i--~g~-~~~~~  209 (209)
                      ++++++|+++|+  ||. ++|++
T Consensus       161 ~v~~~~v~~~ViGeHg~~s~vp~  183 (312)
T TIGR01772       161 GKDPMEVNVPVIGGHSGETIIPL  183 (312)
T ss_pred             CCCHHHeEEEEEEecCCCccccc
Confidence            999999999988  765 77763

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=6.2e-38  Score=270.53  Aligned_cols=175  Identities=29%  Similarity=0.365  Sum_probs=156.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEecCC----chhHHHhhcCCCCC--cceeEeecCCchhhh
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQA   93 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~-----ev~l~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a   93 (209)
                      |++|+||+|+||+|.||+++++.|+..++++     +++|+|+++    ++++++||.|...+  ..+...  + +.+++
T Consensus         1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~-~~y~~   77 (326)
T PRK05442          1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--D-DPNVA   77 (326)
T ss_pred             CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--c-ChHHH
Confidence            6788999999999999999999999999988     999999943    57789999998632  123322  2 34699


Q ss_pred             cCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCCcHHHHHHHHHHhC-CCCCCcEE
Q 028437           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAG-TYNEKKLF  171 (209)
Q Consensus        94 ~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~~~~i~~~~~~~~~-~~p~~~vi  171 (209)
                      ++|||+||++||.++++|++|.|++..|+++++++++.+.+++ |++++|++|||+|    ++++++++.+ +||++|+|
T Consensus        78 ~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD----v~t~v~~k~s~g~p~~rVi  153 (326)
T PRK05442         78 FKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN----TNALIAMKNAPDLPAENFT  153 (326)
T ss_pred             hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH----HHHHHHHHHcCCCCHHHEE
Confidence            9999999999999999999999999999999999999999988 7999999999999    7888888887 99999999


Q ss_pred             EEehhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          172 GVTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       172 g~~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      |+|.||++|+++++|++++++|++|++|+|||+++
T Consensus       154 G~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG  188 (326)
T PRK05442        154 AMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHS  188 (326)
T ss_pred             eeeHHHHHHHHHHHHHHhCcChHHeEEeEEEECCc
Confidence            99999999999999999999999999999877765

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=1.4e-37  Score=264.51  Aligned_cols=173  Identities=42%  Similarity=0.627  Sum_probs=154.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCCc--ceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +||+|+|| |+||+++++.|+.+++..|++|+|+++  .++.++||.|.....  ..... .+.+ +++++|||+|+++|
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~-~~~~-y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT-GDGD-YEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEe-cCCC-hhhhcCCCEEEEeC
Confidence            59999999 999999999998888877999999974  578899999987542  22222 2234 68899999999999


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHHHH
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~~~  183 (209)
                      |.|++|||+|.|++..|.++++++++++.+++|+++++++|||+|    ++++++++.+++|++|+||. |.||++|+++
T Consensus        78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD----~~ty~~~k~sg~p~~rvig~gt~LDsaR~~~  153 (313)
T COG0039          78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVD----ILTYIAMKFSGFPKNRVIGSGTVLDSARFRT  153 (313)
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHH----HHHHHHHHhcCCCccceecccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999    88889999999999999999 7899999999


Q ss_pred             HHHHHcCCCCCCeeEEEE--ecccccc
Q 028437          184 FYAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       184 ~la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      +||+++++++++|+++||  ||.++|+
T Consensus       154 ~lae~~~v~~~~V~~~ViGeHGdt~vp  180 (313)
T COG0039         154 FLAEKLGVSPKDVHAYVIGEHGDTMVP  180 (313)
T ss_pred             HHHHHhCCChhHceeeEeccCCCceEE
Confidence            999999999999999999  5666665

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=1.8e-37  Score=267.41  Aligned_cols=174  Identities=32%  Similarity=0.395  Sum_probs=156.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEecCC----chhHHHhhcCCCCCc--ceeEeecCCchhhhc
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRS--EVAGYMGNDQLGQAL   94 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~-----ev~l~D~~~----~~~~~~dl~~~~~~~--~v~~~~~~~d~~~a~   94 (209)
                      ++|.||+|+||+|+||+++++.|+..++++     |++|+|+++    .+++++|+.|...+.  ....   +.+.++++
T Consensus         1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i---~~~~~~~~   77 (323)
T TIGR01759         1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVA---TTDPEEAF   77 (323)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEE---ecChHHHh
Confidence            467899999999999999999999999998     999999953    578899999987321  2222   12346999


Q ss_pred             CCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCCcHHHHHHHHHHhC-CCCCCcEEE
Q 028437           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAG-TYNEKKLFG  172 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p-~~~viv~snP~~~~~~i~~~~~~~~~-~~p~~~vig  172 (209)
                      +|||+||++||.++++|++|.|++..|+++++++++++.+++| ++++|++|||+|    ++++++++.+ +||++|+||
T Consensus        78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD----v~t~v~~k~s~g~p~~rViG  153 (323)
T TIGR01759        78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPAN----TNALIASKNAPDIPPKNFSA  153 (323)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCHHHEEE
Confidence            9999999999999999999999999999999999999999998 999999999999    8888899988 999999999


Q ss_pred             EehhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          173 VTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       173 ~~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      +|.||++|+++++|+++|++|++|++++|||+++
T Consensus       154 ~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG  187 (323)
T TIGR01759       154 MTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHS  187 (323)
T ss_pred             eeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCC
Confidence            9999999999999999999999999998877764

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=9.3e-37  Score=262.65  Aligned_cols=181  Identities=72%  Similarity=1.075  Sum_probs=166.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      +.||+||||+|.||+++++.|+.+++.+|++|+|+++..++++||.|......+..+..++|++++++|||+||++||.+
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~   97 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVP   97 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCC
Confidence            35999999999999999999999999899999999877778889999876555554444567889999999999999999


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEehhhHHHHHHHHHH
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAG  187 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~~lds~r~~~~la~  187 (209)
                      ++++++|.+.+..|.++++++++++++++|+++++++|||++.+++++++.+++.+++|++|++|+|.||++|+++++|+
T Consensus        98 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA~  177 (323)
T PLN00106         98 RKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAE  177 (323)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCeeEEEEecc---cccc
Q 028437          188 KANVNVAGLLKLLTHKN---LVFI  208 (209)
Q Consensus       188 ~l~v~~~~v~~~~i~g~---~~~~  208 (209)
                      ++|+++.+|+++|||++   ++|+
T Consensus       178 ~lgv~~~~V~~~ViGeHg~~s~vp  201 (323)
T PLN00106        178 KKGLDPADVDVPVVGGHAGITILP  201 (323)
T ss_pred             HhCCChhheEEEEEEeCCCccEee
Confidence            99999999999999665   6665

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=1.8e-36  Score=259.71  Aligned_cols=171  Identities=28%  Similarity=0.410  Sum_probs=154.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCC---cceeEeecCCchhhhcCCCCEEEEcC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR---SEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~---~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ||+|+|+ |.||+++++.|+.+++++|++|+|+++  .+++++||.|....   ..+...  +.+ +++++|||+||++|
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~--~~~-y~~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIR--AGD-YDDCADADIIVITA   76 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEE--ECC-HHHhCCCCEEEECC
Confidence            7999999 999999999999999999999999975  57889999996531   233433  235 58999999999999


Q ss_pred             CCCCCCCCC--hhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHH
Q 028437          105 GVPRKPGMT--RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (209)
Q Consensus       105 g~~~~~g~~--r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~  181 (209)
                      |.+++||++  |.|++..|.++++++++.+.+++|++++|++|||+|    ++++++++.++||++|+||+ |.|||+|+
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvD----v~t~~~~k~sg~p~~rviG~gt~LDs~R~  152 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLD----IAVYIAATEFDYPANKVIGTGTMLDTARL  152 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHH----HHHHHHHHHhCcChhheecccchHHHHHH
Confidence            999999998  699999999999999999999999999999999999    88899999999999999999 89999999


Q ss_pred             HHHHHHHcCCCCCCeeEEEE--ecccccc
Q 028437          182 KTFYAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       182 ~~~la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      ++++|+++|+++++|++||+  ||+++|+
T Consensus       153 ~~~la~~l~v~~~~V~~~ViGeHGds~vp  181 (307)
T cd05290         153 RRIVADKYGVDPKNVTGYVLGEHGSHAFP  181 (307)
T ss_pred             HHHHHHHhCCCcccEEEEEEecCCCceEE
Confidence            99999999999999999966  6666665

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=4.2e-36  Score=258.06  Aligned_cols=177  Identities=28%  Similarity=0.406  Sum_probs=156.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +.+||+|+|| |.||+++++.|+..++.+|++|+|+++  ..+.++||.|.........+..+.|+ ++++|||+||+++
T Consensus         2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy-~~~~~adivvita   79 (312)
T cd05293           2 PRNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDY-SVTANSKVVIVTA   79 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCH-HHhCCCCEEEECC
Confidence            3469999998 999999999999999999999999965  57889999998632111122223565 5699999999999


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHHHH
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~~~  183 (209)
                      |.++++|++|.+++..|+++++++++.+++++|++++|++|||++    ++++++++.+++|++|+||+ |.||++|+++
T Consensus        80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d----~~t~~~~k~sg~p~~~viG~gt~Ld~~R~~~  155 (312)
T cd05293          80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRY  155 (312)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH----HHHHHHHHHhCCCHHHEEecCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999    88999999999999999999 8999999999


Q ss_pred             HHHHHcCCCCCCeeEEEE--eccccccC
Q 028437          184 FYAGKANVNVAGLLKLLT--HKNLVFIV  209 (209)
Q Consensus       184 ~la~~l~v~~~~v~~~~i--~g~~~~~~  209 (209)
                      ++|+++++++++|+++++  ||+++|++
T Consensus       156 ~la~~l~v~~~~v~~~v~GeHG~s~vp~  183 (312)
T cd05293         156 LIAERLGVAPSSVHGWIIGEHGDSSVPV  183 (312)
T ss_pred             HHHHHhCCChhhEEEEEeecCCCCcccc
Confidence            999999999999999998  77777763

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=1e-35  Score=258.67  Aligned_cols=173  Identities=25%  Similarity=0.423  Sum_probs=154.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCC-cceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      +||+|+|+ |.||+++++.|+..++.+|++|+|+++  ..++++||.|.... .... +..+.+ +++++|||+||++||
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~-i~~~~d-y~~~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTK-ILASTD-YAVTAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCE-EEeCCC-HHHhCCCCEEEECCC
Confidence            69999998 999999999999999999999999975  57889999998632 1222 222345 467999999999999


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-hhhHHHHHHH
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTF  184 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~-~lds~r~~~~  184 (209)
                      .++++|++|.|++..|+++++++++.+++++|++++|++|||+|    ++++++++.++||++|+||++ .||++|++++
T Consensus       115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvd----v~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~  190 (350)
T PLN02602        115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVD----VLTYVAWKLSGFPANRVIGSGTNLDSSRFRFL  190 (350)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchH----HHHHHHHHHhCCCHHHEEeecchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    888888898899999999994 8999999999


Q ss_pred             HHHHcCCCCCCeeEEEE--ecccccc
Q 028437          185 YAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       185 la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      +|+++|+++++|+++|+  ||+++|+
T Consensus       191 lA~~l~v~~~~V~~~ViGeHGds~vp  216 (350)
T PLN02602        191 IADHLDVNAQDVQAYIVGEHGDSSVA  216 (350)
T ss_pred             HHHHhCCCccceeeeEEecCCCceEe
Confidence            99999999999999977  6677765

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.2e-35  Score=242.43  Aligned_cols=173  Identities=27%  Similarity=0.414  Sum_probs=157.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCC---cceeEeecCCchhhhcCCCCEEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR---SEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~---~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      ..||.|+|+ |.+|.+.+..++.+|+.+|++++|.++  +++..+||+|....   +++..   +.| +.+.+++++||+
T Consensus        20 ~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~---~~D-y~~sa~S~lvIi   94 (332)
T KOG1495|consen   20 HNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA---SKD-YSVSANSKLVII   94 (332)
T ss_pred             CceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe---cCc-ccccCCCcEEEE
Confidence            369999999 999999999999999999999999975  67889999998642   23332   446 478899999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHH
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~  181 (209)
                      +||..+++|++|.+++++|+.+++.+++++-+|+|+++++++|||+|    ++||+.++.++||++|+||. |+|||.||
T Consensus        95 TAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVD----ilTYv~wKLSgfP~nRViGsGcnLDsaRF  170 (332)
T KOG1495|consen   95 TAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVD----ILTYVTWKLSGFPKNRVIGSGCNLDSARF  170 (332)
T ss_pred             ecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchH----HHHHHHHHHcCCcccceeccCcCccHHHH
Confidence            99999999999999999999999999999999999999999999999    99999999999999999999 89999999


Q ss_pred             HHHHHHHcCCCCCCeeEEEE--eccccccC
Q 028437          182 KTFYAGKANVNVAGLLKLLT--HKNLVFIV  209 (209)
Q Consensus       182 ~~~la~~l~v~~~~v~~~~i--~g~~~~~~  209 (209)
                      |++++++||++|+++++|||  ||.+.-+|
T Consensus       171 ryLi~~~Lg~~pss~hgwIiGEHGdSsV~v  200 (332)
T KOG1495|consen  171 RYLIGNRLGVHPSSCHGWIIGEHGDSSVPV  200 (332)
T ss_pred             HHHHHHHhCCCcccceEEEeeccCCcccee
Confidence            99999999999999999999  88876543

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=1.3e-35  Score=255.97  Aligned_cols=170  Identities=33%  Similarity=0.419  Sum_probs=151.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEecCC----chhHHHhhcCCCCC--cceeEeecCCchhhhcCCCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSD   98 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~-----ev~l~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aD   98 (209)
                      ||+||||+|+||++++..|+..++++     +++|+|+++    .++.++|+.|...+  .....   +.+.+++++|||
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i---~~~~~~~~~~aD   78 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVI---TTDPEEAFKDVD   78 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEE---ecChHHHhCCCC
Confidence            89999999999999999999988877     599999975    46678899988532  11222   124479999999


Q ss_pred             EEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCCcHHHHHHHHHHhCC-CCCCcEEEEehh
Q 028437           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGT-YNEKKLFGVTTL  176 (209)
Q Consensus        99 ~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~~~~i~~~~~~~~~~-~p~~~vig~~~l  176 (209)
                      +||++||.++++|++|.|++..|+++++++++.+++++ |++++|++|||+|    ++++++++.++ +|++||||+|.|
T Consensus        79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD----~~t~~~~k~sg~~p~~~vig~t~L  154 (323)
T cd00704          79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPAN----TNALIALKNAPNLPPKNFTALTRL  154 (323)
T ss_pred             EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCHHHEEEeeHH
Confidence            99999999999999999999999999999999999996 9999999999999    88888999999 599999999999


Q ss_pred             hHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          177 DVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       177 ds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      |++|++++||++++++|++|++++|||+++
T Consensus       155 Ds~R~r~~la~~l~v~~~~V~~~~V~GeHG  184 (323)
T cd00704         155 DHNRAKAQVARKLGVRVSDVKNVIIWGNHS  184 (323)
T ss_pred             HHHHHHHHHHHHhCcCHHHceeeeEEeccc
Confidence            999999999999999999999988888864

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=2.8e-35  Score=261.48  Aligned_cols=176  Identities=28%  Similarity=0.279  Sum_probs=156.1

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhC-------CCccEEEEEecCC--chhHHHhhcCCCCC--cceeEeecCCchhh
Q 028437           24 ESVPDRKVAVLGAAGGIGQPLALLMKLN-------PLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQ   92 (209)
Q Consensus        24 ~~~~~~kI~IiGasG~vG~~la~~L~~~-------g~~~ev~l~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~   92 (209)
                      +.+++.||+||||+|+||+++++.|+..       ++..|++++|+++  ++++++||.|..++  ..+...  +.+ ++
T Consensus        96 ~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~-ye  172 (444)
T PLN00112         96 SWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDP-YE  172 (444)
T ss_pred             cCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCC-HH
Confidence            3556789999999999999999999998       6666999999975  57889999998633  123221  334 68


Q ss_pred             hcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHh-hCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE
Q 028437           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-YCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF  171 (209)
Q Consensus        93 a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~-~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vi  171 (209)
                      +++|||+||+++|.|+++|++|.|++..|.++++++++.+.+ ++|++++|++|||+|    ++++++++.+++|++|+|
T Consensus       173 ~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvD----v~t~v~~k~sg~~~~rVi  248 (444)
T PLN00112        173 VFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCN----TNALICLKNAPNIPAKNF  248 (444)
T ss_pred             HhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHH----HHHHHHHHHcCCCCcceE
Confidence            999999999999999999999999999999999999999999 589999999999999    888889999999999999


Q ss_pred             EE-ehhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          172 GV-TTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       172 g~-~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      |. |.||++|++++||+++|+++++|++++||||++
T Consensus       249 GtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHG  284 (444)
T PLN00112        249 HALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHS  284 (444)
T ss_pred             EeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCC
Confidence            99 789999999999999999999999988888874

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=6.4e-35  Score=251.63  Aligned_cols=172  Identities=28%  Similarity=0.378  Sum_probs=154.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEecCC----chhHHHhhcCCCCC--cceeEeecCCchhhhcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALED   96 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~-----ev~l~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~   96 (209)
                      |+||+|+||+|.||+++++.|+..++++     |++|+|+++    ++++++|+.|...+  ..+...  +.+ +++++|
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~d   78 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFKD   78 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhCC
Confidence            5799999999999999999999999999     999999943    57789999998632  223332  234 689999


Q ss_pred             CCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCCcHHHHHHHHHHhC-CCCCCcEEEEe
Q 028437           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAG-TYNEKKLFGVT  174 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~~~~i~~~~~~~~~-~~p~~~vig~~  174 (209)
                      ||+||++||.++++|++|.+++..|+++++++++.+++++ |++++|++|||+|    ++++++++.+ +||+++++|+|
T Consensus        79 aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD----~~t~~~~k~sg~~p~~~ViG~t  154 (322)
T cd01338          79 ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCN----TNALIAMKNAPDIPPDNFTAMT  154 (322)
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHH----HHHHHHHHHcCCCChHheEEeh
Confidence            9999999999999999999999999999999999999999 5999999999999    7788888888 59999999999


Q ss_pred             hhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          175 TLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       175 ~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      .||+.|+++++|+++|+++++|++++|||+++
T Consensus       155 ~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG  186 (322)
T cd01338         155 RLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHS  186 (322)
T ss_pred             HHHHHHHHHHHHHHhCcChhHeEEEEEEeCCc
Confidence            99999999999999999999999999988864

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=9.7e-35  Score=250.06  Aligned_cols=175  Identities=27%  Similarity=0.402  Sum_probs=154.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCC-cceeEeecCCchhhhcCCCCEEEE
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      +..+||+|+|| |.||+++++.|+..++++|++|+|+++  .++.++|+.|.... ..+...  +++ ++++++||+||+
T Consensus         4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~--~~~-~~~~~~adivIi   79 (315)
T PRK00066          4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY--AGD-YSDCKDADLVVI   79 (315)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE--eCC-HHHhCCCCEEEE
Confidence            34479999999 999999999999999999999999965  57889999998632 233332  234 578999999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHH
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~  181 (209)
                      ++|.+++||++|.|++..|+++++++++.+++++|++++|++|||++    ++++++++.+++|++|++|+ |.+|+.|+
T Consensus        80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d----~~~~~~~k~sg~p~~~viG~gt~LDs~R~  155 (315)
T PRK00066         80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVD----ILTYATWKLSGFPKERVIGSGTSLDSARF  155 (315)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHH----HHHHHHHHHhCCCHHHEeecCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999    78888888889999999999 58999999


Q ss_pred             HHHHHHHcCCCCCCeeEEEE--ecccccc
Q 028437          182 KTFYAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       182 ~~~la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      ++++|+++|+++++|+++++  ||+++|+
T Consensus       156 ~~~la~~l~v~~~~V~~~viGeHG~s~v~  184 (315)
T PRK00066        156 RYMLSEKLDVDPRSVHAYIIGEHGDTEFP  184 (315)
T ss_pred             HHHHHHHhCCCcccEEEEEEecCCCccee
Confidence            99999999999999999866  4555554

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=2e-34  Score=247.96  Aligned_cols=179  Identities=55%  Similarity=0.834  Sum_probs=157.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      +|.||+||||+|.||+.+++.|+..+..++++|+|++...++++||.|......+.......+++++++|||+||+++|.
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~   86 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV   86 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence            45699999999999999999999888888999999966678888999876543444332223446899999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHH----HHhCCCCCCcEEEEehhhHHHHH
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVF----KKAGTYNEKKLFGVTTLDVVRAK  182 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~----~~~~~~p~~~vig~~~lds~r~~  182 (209)
                      +++++++|.+++..|+++++++++++++++|+++++++|||++    ++++++    ++.+++|+++++|++.|||+|++
T Consensus        87 ~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvd----v~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r  162 (321)
T PTZ00325         87 PRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVN----STVPIAAETLKKAGVYDPRKLFGVTTLDVVRAR  162 (321)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHhhhhhccCCChhheeechhHHHHHHH
Confidence            9999999999999999999999999999999999999999999    555555    47888999999999889999999


Q ss_pred             HHHHHHcCCCCCCeeEEEE--ecc-ccccC
Q 028437          183 TFYAGKANVNVAGLLKLLT--HKN-LVFIV  209 (209)
Q Consensus       183 ~~la~~l~v~~~~v~~~~i--~g~-~~~~~  209 (209)
                      +++|+++|++|++|++||+  ||+ ++|++
T Consensus       163 ~~la~~l~v~~~~V~~~VlGeHGd~s~v~~  192 (321)
T PTZ00325        163 KFVAEALGMNPYDVNVPVVGGHSGVTIVPL  192 (321)
T ss_pred             HHHHHHhCcChhheEEEEEeecCCcccccc
Confidence            9999999999999999999  898 78874

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=1.1e-34  Score=254.27  Aligned_cols=177  Identities=29%  Similarity=0.306  Sum_probs=153.2

Q ss_pred             CCCCCCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEE--ecCC--chhHHHhhcCCCCC--cceeEeecCCchh
Q 028437           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALY--DIAN--TPGVAADVGHINTR--SEVAGYMGNDQLG   91 (209)
Q Consensus        23 ~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~-----ev~l~--D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~   91 (209)
                      ++.+++.||+||||+|.||+++++.|+..++++     .++|+  |+++  .+++++||.|..++  ..+...  +.+ +
T Consensus        39 ~~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~-y  115 (387)
T TIGR01757        39 KSWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDP-Y  115 (387)
T ss_pred             hcCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCC-H
Confidence            345567899999999999999999999999988     56667  5543  57889999998632  122221  334 6


Q ss_pred             hhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 028437           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (209)
Q Consensus        92 ~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~v  170 (209)
                      ++++|||+||++||.|+++|++|.|++..|+++++++++.+.+++ |++++|++|||+|    ++++++++.+++|++|+
T Consensus       116 ~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvD----v~t~v~~k~sg~~~~rv  191 (387)
T TIGR01757       116 EVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCN----TNALIAMKNAPNIPRKN  191 (387)
T ss_pred             HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHH----HHHHHHHHHcCCCcccE
Confidence            899999999999999999999999999999999999999999987 9999999999999    78888889888999999


Q ss_pred             EEE-ehhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          171 FGV-TTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       171 ig~-~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      ||+ |.||++|++++||+++++++++|+..+||||++
T Consensus       192 iG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHG  228 (387)
T TIGR01757       192 FHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHS  228 (387)
T ss_pred             EEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCC
Confidence            999 789999999999999999999998777777753

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=7.7e-35  Score=240.22  Aligned_cols=192  Identities=68%  Similarity=0.961  Sum_probs=179.6

Q ss_pred             ccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhc
Q 028437           15 PAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL   94 (209)
Q Consensus        15 ~~~~~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~   94 (209)
                      +..-|.|.+-..+..||+|.||+|.||+.|...|....+++++.|||+....+...|+.|.+....+..+.+.+.+++++
T Consensus        15 ~~~~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al   94 (345)
T KOG1494|consen   15 SGPKRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENAL   94 (345)
T ss_pred             cCCcccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHh
Confidence            34456688888888999999999999999999999999999999999988888999999999888888887777899999


Q ss_pred             CCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe
Q 028437           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~  174 (209)
                      +++|+||+-||+|++|||+|+|++..|..++++++.++.++||++.+.++|||++++++++++++++.+.|+|.|++|+|
T Consensus        95 ~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVT  174 (345)
T KOG1494|consen   95 KGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVT  174 (345)
T ss_pred             cCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceecee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHcCCCC-CCeeEEEEecccc
Q 028437          175 TLDVVRAKTFYAGKANVNV-AGLLKLLTHKNLV  206 (209)
Q Consensus       175 ~lds~r~~~~la~~l~v~~-~~v~~~~i~g~~~  206 (209)
                      .||..|++.++++.++++| +++.-.+|+|-++
T Consensus       175 tLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG  207 (345)
T KOG1494|consen  175 TLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAG  207 (345)
T ss_pred             hhhhhhHHHHHHHHhCCCchhcCCcceecCcCC
Confidence            9999999999999999999 6699889988664

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=1.2e-34  Score=247.72  Aligned_cols=168  Identities=27%  Similarity=0.395  Sum_probs=151.0

Q ss_pred             EEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCCc--ceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        33 IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      |||+ |.||+++++.|+..++++|++|+|+++  .+++++||.|.....  .+...  ..+ +++++|||+||++||.++
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~daDivVitag~~r   76 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR--SGD-YSDCKDADLVVITAGAPQ   76 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe--cCC-HHHHCCCCEEEECCCCCC
Confidence            6898 999999999999999999999999965  578899999986422  22322  234 589999999999999999


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHHHHHHHH
Q 028437          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAG  187 (209)
Q Consensus       109 ~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~~~~la~  187 (209)
                      +||++|.|++..|+++++++++.+++++|++++|++|||+|    ++++++++.+++|++|++|+ |.||++|+++++|+
T Consensus        77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d----~~t~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~  152 (299)
T TIGR01771        77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD----ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAE  152 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH----HHHHHHHHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999    88889999999999999999 68999999999999


Q ss_pred             HcCCCCCCeeEEEE--ecccccc
Q 028437          188 KANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       188 ~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      ++++++++|+++++  ||+++|+
T Consensus       153 ~l~v~~~~V~~~v~GeHG~s~vp  175 (299)
T TIGR01771       153 KLGVDPQSVHAYIIGEHGDSEVP  175 (299)
T ss_pred             HhCcCcCeEEEEEEecCCCceee
Confidence            99999999999977  6677776

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=1.1e-33  Score=242.87  Aligned_cols=171  Identities=31%  Similarity=0.430  Sum_probs=149.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCC--cceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +||+|+|+ |.+|++++..|+..|+..+|+++|+++  .++.+.|+.+....  ......  ..+ ++++++||+||+++
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~--~~~-~~~l~~aDIVIita   76 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK--AGD-YSDCKDADIVVITA   76 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE--cCC-HHHhCCCCEEEEcc
Confidence            38999999 999999999999999767999999975  35677888776432  122222  234 46799999999999


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHHHH
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~~~  183 (209)
                      |.++++|++|.+++..|+++++++++.+++++|++++|++|||+|    ++++++++.++||++|+||+ |.||++|+++
T Consensus        77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d----~~~~~~~~~~g~p~~~v~g~gt~LDs~R~~~  152 (306)
T cd05291          77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD----VITYVVQKLSGLPKNRVIGTGTSLDTARLRR  152 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH----HHHHHHHHHhCcCHHHEeeccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999    88999999999999999999 6899999999


Q ss_pred             HHHHHcCCCCCCeeEEEEecc---cccc
Q 028437          184 FYAGKANVNVAGLLKLLTHKN---LVFI  208 (209)
Q Consensus       184 ~la~~l~v~~~~v~~~~i~g~---~~~~  208 (209)
                      ++|+++++++++|+++ |||+   ++|+
T Consensus       153 ~la~~l~v~~~~v~~~-V~G~Hg~s~~~  179 (306)
T cd05291         153 ALAEKLNVDPRSVHAY-VLGEHGDSQFV  179 (306)
T ss_pred             HHHHHHCCCcccceEE-EEecCCCceee
Confidence            9999999999999996 6555   5554

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=2.1e-33  Score=241.44  Aligned_cols=179  Identities=56%  Similarity=0.840  Sum_probs=151.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEecCC-chhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~-~g~~~ev~l~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      |||+|+||+|.+|+++++.|.. .+...+++++|+++ ..+.++|+.|......+.. ...++++++++++|+||+++|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~-~~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKG-FSGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEE-eCCCCHHHHcCCCCEEEEcCCC
Confidence            6999999999999999998865 45566999999864 3345578877432223332 1134667899999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEehhhHHHHHHHHH
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA  186 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~~lds~r~~~~la  186 (209)
                      +++++++|.+++..|++++++++++|++++|+++++++|||+|.+++++.+.+++.+++|++|+||+|.||++|+++++|
T Consensus        80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia  159 (312)
T PRK05086         80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA  159 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999997777766667799999999999999999999999999


Q ss_pred             HHcCCCCCCeeEEEE--ecc-cccc
Q 028437          187 GKANVNVAGLLKLLT--HKN-LVFI  208 (209)
Q Consensus       187 ~~l~v~~~~v~~~~i--~g~-~~~~  208 (209)
                      +++|+++++|+++++  ||. ++|+
T Consensus       160 ~~l~~~~~~v~~~v~GeHg~~s~~p  184 (312)
T PRK05086        160 ELKGKQPGEVEVPVIGGHSGVTILP  184 (312)
T ss_pred             HHhCCChhheEEEEEEecCCCceec
Confidence            999999999998887  533 6665

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1.7e-33  Score=242.95  Aligned_cols=172  Identities=30%  Similarity=0.370  Sum_probs=148.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEecCC----chhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEE
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~-----ev~l~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~V  100 (209)
                      ||+||||+|.||+++++.|...++++     +++|+|+++    ++++++|+.|...... .....+++.+++++|||+|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~-~~~~~~~~~~~~~~~aDiV   79 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLL-DGVVPTHDPAVAFTDVDVA   79 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhc-CceeccCChHHHhCCCCEE
Confidence            69999999999999999999988875     799999953    4577889999873321 1112223447899999999


Q ss_pred             EEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhH
Q 028437          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDV  178 (209)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds  178 (209)
                      |++||.+++++++|.+++..|+++++++++++.+++ |++++|++|||+|    ++++++++.+++++.++||+ |.||+
T Consensus        80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD----v~t~v~~~~sg~~~~~vig~gt~LDs  155 (324)
T TIGR01758        80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN----TNALVLSNYAPSIPPKNFSALTRLDH  155 (324)
T ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCcceEEEeeehHH
Confidence            999999999999999999999999999999999995 9999999999999    88889999887777789999 78999


Q ss_pred             HHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          179 VRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       179 ~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      +|++++||++++++|++|++.+|||+++
T Consensus       156 ~R~r~~la~~l~v~~~~V~~~~V~GeHG  183 (324)
T TIGR01758       156 NRALAQVAERAGVPVSDVKNVIIWGNHS  183 (324)
T ss_pred             HHHHHHHHHHhCCChhhceEeEEEECCC
Confidence            9999999999999999999888877764

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=1.8e-33  Score=243.13  Aligned_cols=172  Identities=31%  Similarity=0.397  Sum_probs=148.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEecCC----chhHHHhhcCCCCC--cceeEeecCCchhhhcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALE   95 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~-----ev~l~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~   95 (209)
                      +|.||+||||+|++|++++..|+..++++     +|+++|+++    +.+...|+.|...+  ..+..   +.+++++++
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~   77 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK   77 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence            36799999999999999999999988764     999999953    35566788876422  12222   346779999


Q ss_pred             CCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCCcHHHHHHHHHHh-CCCCCCcEEEE
Q 028437           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKA-GTYNEKKLFGV  173 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~~~~i~~~~~~~~-~~~p~~~vig~  173 (209)
                      |||+|||+||.+++++++|.+++..|+++++++++.+++++ |++++|++|||+|    ++++++++. +++|+++ ||+
T Consensus        78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD----~~t~~~~k~~~~~~~~~-ig~  152 (325)
T cd01336          78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPAN----TNALILLKYAPSIPKEN-FTA  152 (325)
T ss_pred             CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHH----HHHHHHHHHcCCCCHHH-EEe
Confidence            99999999999999999999999999999999999999997 7999999999999    788888887 5788888 666


Q ss_pred             -ehhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          174 -TTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       174 -~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                       |.||++|+++++|+++++++++|++++|||+++
T Consensus       153 gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG  186 (325)
T cd01336         153 LTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHS  186 (325)
T ss_pred             eehHHHHHHHHHHHHHhCcChhhceEeEEEEcCC
Confidence             799999999999999999999999999988765

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=2.8e-33  Score=239.68  Aligned_cols=171  Identities=32%  Similarity=0.502  Sum_probs=152.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCC-cceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      |+|+|+ |.||++++..|+..|++.+++++|+++  ..+.++||.|.... ...... .+++ ++++++||+||+++|.|
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~-~~~~-~~~l~~aDiVIitag~p   77 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIV-RGGD-YADAADADIVVITAGAP   77 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEE-ECCC-HHHhCCCCEEEEcCCCC
Confidence            689999 999999999999999888999999975  46788899988653 112222 1345 57999999999999999


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHHHHHHH
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYA  186 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~~~~la  186 (209)
                      ++++++|.+++..|+++++++++.+++++|++++|++|||++    ++++++++.+++|++|++|+ |.+|+.|+++++|
T Consensus        78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d----~~~~~~~~~sg~~~~kviG~gt~lDs~r~~~~la  153 (300)
T cd00300          78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVD----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLA  153 (300)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHH----HHHHHHHHHhCcCHHHEEecCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999    88999999999999999999 5799999999999


Q ss_pred             HHcCCCCCCeeEEEE--ecccccc
Q 028437          187 GKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       187 ~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      +++++++++|+++++  ||+++|+
T Consensus       154 ~~l~v~~~~v~~~viGeHg~s~v~  177 (300)
T cd00300         154 EKLDVDPQSVHAYVLGEHGDSQVV  177 (300)
T ss_pred             HHhCCCcccEEEEEEeccCCceee
Confidence            999999999999988  6677765

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=1.4e-33  Score=250.68  Aligned_cols=177  Identities=18%  Similarity=0.220  Sum_probs=153.9

Q ss_pred             CCCCCCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEecC--C--chhHHHhhcCCCCCc--ceeEeecCCchh
Q 028437           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIA--N--TPGVAADVGHINTRS--EVAGYMGNDQLG   91 (209)
Q Consensus        23 ~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~-----ev~l~D~~--~--~~~~~~dl~~~~~~~--~v~~~~~~~d~~   91 (209)
                      .+++++.+|+|+||+|.+|++|+..+++..+++     .++|+|++  .  +++.++||.|+.++.  .+...  + +.+
T Consensus       118 ~~~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~--~-~~~  194 (452)
T cd05295         118 RSKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT--T-DLD  194 (452)
T ss_pred             hcCCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE--E-CCH
Confidence            346678899999999999999999999876543     69999994  2  578899999986431  23332  2 347


Q ss_pred             hhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC--CeEEEEecCCCCCcHHHHHHHHHHhC-CCCCC
Q 028437           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMISNPVNSTVPIAAEVFKKAG-TYNEK  168 (209)
Q Consensus        92 ~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p--~~~viv~snP~~~~~~i~~~~~~~~~-~~p~~  168 (209)
                      ++++|||+||+++|.|+++|++|.|++..|.++++++++++.+++|  ++++|++|||+|    ++++++++.+ ++|++
T Consensus       195 ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD----~~t~i~~k~apgiP~~  270 (452)
T cd05295         195 VAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLN----LKTSILIKYAPSIPRK  270 (452)
T ss_pred             HHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCHH
Confidence            9999999999999999999999999999999999999999999998  788888899999    6677777766 99999


Q ss_pred             cEEEEehhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          169 KLFGVTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       169 ~vig~~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      ||+|++.+|++|++++||+++|+++++|+..+||||++
T Consensus       271 rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG  308 (452)
T cd05295         271 NIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIG  308 (452)
T ss_pred             HEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccC
Confidence            99999888899999999999999999999999999876

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-32  Score=237.49  Aligned_cols=174  Identities=34%  Similarity=0.609  Sum_probs=151.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCCc--ceeEeecCCchhhhcCCCCEEEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      +.+||+|+|| |.+|+++++.++..++ .+|+|+|+++  ..+.++|+.+.....  ... +..++|+ ++++|||+||+
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~-i~~~~d~-~~l~~ADiVVi   79 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNIN-ILGTNNY-EDIKDSDVVVI   79 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeE-EEeCCCH-HHhCCCCEEEE
Confidence            4569999999 9999999999999986 5899999975  356778888774321  122 2224576 48999999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-hhhHHHH
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRA  181 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~-~lds~r~  181 (209)
                      ++|.+++++++|.|++..|.++++++++.++++||++++|++|||++    ++++.+++.+++|++|++|+| .+|++|+
T Consensus        80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~d----i~t~~~~~~s~~p~~rviG~gt~lds~R~  155 (319)
T PTZ00117         80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLD----CMVKVFQEKSGIPSNKICGMAGVLDSSRF  155 (319)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH----HHHHHHHHhhCCCcccEEEecchHHHHHH
Confidence            99999999999999999999999999999999999999999999999    778888899999999999997 7999999


Q ss_pred             HHHHHHHcCCCCCCeeEEEE--ecccccc
Q 028437          182 KTFYAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       182 ~~~la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      ++++|+++|+++++|+++++  ||+++|+
T Consensus       156 ~~~la~~l~v~~~~v~~~viGeHg~~~v~  184 (319)
T PTZ00117        156 RCNLAEKLGVSPGDVSAVVIGGHGDLMVP  184 (319)
T ss_pred             HHHHHHHhCCCcccceEEEeecCCCcEEe
Confidence            99999999999999999999  6666655

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=1.4e-32  Score=231.25  Aligned_cols=171  Identities=35%  Similarity=0.482  Sum_probs=148.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCC--CccEEEEEecCC--chhHHHhhcCCCCCc-ceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIAN--TPGVAADVGHINTRS-EVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g--~~~ev~l~D~~~--~~~~~~dl~~~~~~~-~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |+|+||+|.+|.+++..|+..+  ...+|+|+|+++  +++...|+.+..... ..+ +..++|++++++|||+||+++|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~-i~~~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIK-VSITDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcE-EEECCchHHHhCCCCEEEECCC
Confidence            6899999999999999999998  667999999975  456777887765432 122 2235677899999999999999


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEehhhHHHHHHHH
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY  185 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~~lds~r~~~~l  185 (209)
                      .++++|++|.+.+.+|++++++++++++++||++|+|++|||++    ++++++++.+++|++|+||+|.+|+.|+++++
T Consensus        80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d----~~t~~~~~~sg~~~~kviG~~~ld~~r~~~~l  155 (263)
T cd00650          80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRIL  155 (263)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCchhEEEeecchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    88889999999999999999779999999999


Q ss_pred             HHHcCCCCCCeeEEEEeccccc
Q 028437          186 AGKANVNVAGLLKLLTHKNLVF  207 (209)
Q Consensus       186 a~~l~v~~~~v~~~~i~g~~~~  207 (209)
                      |+++++++++|++ .+||++++
T Consensus       156 a~~l~v~~~~v~~-~v~G~hg~  176 (263)
T cd00650         156 AEKLGVDPDDVKV-YILGEHGG  176 (263)
T ss_pred             HHHhCCCccceEE-EEEEcCCC
Confidence            9999999999994 45555443

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=2.6e-32  Score=235.47  Aligned_cols=177  Identities=33%  Similarity=0.612  Sum_probs=152.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCC--CcceeEeecCCchhhhcCCCCEE
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVV  100 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aD~V  100 (209)
                      |.+.+||+|+|| |.+|++++..++..|+ .+|+|+|+++.  .+..+|+.+...  ....+. ..++|+ ++++|||+|
T Consensus         3 ~~~~~KI~IIGa-G~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I-~~~~d~-~~l~~aDiV   78 (321)
T PTZ00082          3 MIKRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKV-IGTNNY-EDIAGSDVV   78 (321)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEE-EECCCH-HHhCCCCEE
Confidence            445579999998 9999999999999997 36999999763  456777777532  111222 224575 789999999


Q ss_pred             EEcCCCCCCCCC-----ChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-
Q 028437          101 IIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-  174 (209)
Q Consensus       101 i~~ag~~~~~g~-----~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~-  174 (209)
                      |+++|.++++++     +|.+.+..|+++++++++.+++++|++++|++|||++    ++++.+++.+++|++|++|+| 
T Consensus        79 I~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d----i~t~~~~~~sg~p~~rviGlgt  154 (321)
T PTZ00082         79 IVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD----VMVKLLQEHSGLPKNKVCGMAG  154 (321)
T ss_pred             EECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHhcCCChhhEEEecC
Confidence            999999999999     9999999999999999999999999999999999999    788888999999999999997 


Q ss_pred             hhhHHHHHHHHHHHcCCCCCCeeEEEE--eccccccC
Q 028437          175 TLDVVRAKTFYAGKANVNVAGLLKLLT--HKNLVFIV  209 (209)
Q Consensus       175 ~lds~r~~~~la~~l~v~~~~v~~~~i--~g~~~~~~  209 (209)
                      .+|+.|+++++|+++++++++|+++++  ||+++|++
T Consensus       155 ~lds~R~~~~la~~l~v~~~~v~~~viGeHg~s~v~~  191 (321)
T PTZ00082        155 VLDSSRLRTYIAEKLGVNPRDVHASVIGAHGDKMVPL  191 (321)
T ss_pred             cccHHHHHHHHHHHhCCCcccceeeEEecCCCceEec
Confidence            799999999999999999999999999  77788763

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1.7e-32  Score=235.25  Aligned_cols=174  Identities=30%  Similarity=0.528  Sum_probs=149.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcce-eEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEV-AGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v-~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |||+|+|+ |.+|..++..++..|+. +|+++|+.+.  ++...|+.+....... ..+..++|++ .+++||+||+++|
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~-~~~~aDiVIitag   78 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYA-DTANSDIVVITAG   78 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHH-HhCCCCEEEEcCC
Confidence            59999999 99999999999999886 8999999652  3455566654321111 1122245764 5899999999999


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-hhhHHHHHHH
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTF  184 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~-~lds~r~~~~  184 (209)
                      .|++++++|.+++..|.++++++++++.+++|++++|++|||+|    ++++++++.+|+|++|+||+| .|||+|++++
T Consensus        79 ~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~d----i~t~~~~~~sg~~~~rviG~g~~lds~R~~~~  154 (305)
T TIGR01763        79 LPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLD----AMTYVAWQKSGFPKERVIGQAGVLDSARFRTF  154 (305)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHHCcCHHHEEEeccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    889999999999999999996 7999999999


Q ss_pred             HHHHcCCCCCCeeEEEE--eccccccC
Q 028437          185 YAGKANVNVAGLLKLLT--HKNLVFIV  209 (209)
Q Consensus       185 la~~l~v~~~~v~~~~i--~g~~~~~~  209 (209)
                      +|+++++++++|+++++  ||+++|++
T Consensus       155 la~~l~v~~~~v~~~v~GeHg~s~~~~  181 (305)
T TIGR01763       155 IAMELGVSVQDVTACVLGGHGDAMVPL  181 (305)
T ss_pred             HHHHhCcCHHHeeeeEEecCCCcEEee
Confidence            99999999999999988  88888863

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=4.1e-32  Score=232.96  Aligned_cols=173  Identities=36%  Similarity=0.631  Sum_probs=149.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCCc--ceeEeecCCchhhhcCCCCEEEEc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      ||||+|+|| |.+|++++..++..|+. +|+++|+++  .++...|+.+.....  ..+ +..++|+ +++++||+||++
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~-i~~~~d~-~~~~~aDiVii~   77 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTK-ITGTNDY-EDIAGSDVVVIT   77 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcE-EEeCCCH-HHHCCCCEEEEC
Confidence            479999999 99999999999999877 999999975  345566666653211  111 2224565 679999999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-hhhHHHHH
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAK  182 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~-~lds~r~~  182 (209)
                      +|.|++++++|.+.+.+|+++++++++.+++++|++++|++|||++    ++++++++.+++|++|++|+| .+|++|++
T Consensus        78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d----~~~~~~~~~s~~~~~~viG~gt~lds~r~~  153 (307)
T PRK06223         78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVD----AMTYVALKESGFPKNRVIGMAGVLDSARFR  153 (307)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCcccEEEeCCCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999    888889999999999999996 79999999


Q ss_pred             HHHHHHcCCCCCCeeEEEEe--cccccc
Q 028437          183 TFYAGKANVNVAGLLKLLTH--KNLVFI  208 (209)
Q Consensus       183 ~~la~~l~v~~~~v~~~~i~--g~~~~~  208 (209)
                      ++||+++++++++|+++++|  |+++|+
T Consensus       154 ~~la~~l~v~~~~v~~~viGehg~s~~p  181 (307)
T PRK06223        154 TFIAEELNVSVKDVTAFVLGGHGDSMVP  181 (307)
T ss_pred             HHHHHHhCcChhhCcccEEcCCCCcceE
Confidence            99999999999999999994  556654

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=5.1e-32  Score=232.69  Aligned_cols=175  Identities=30%  Similarity=0.464  Sum_probs=152.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC----chhHHHhhcCCCCC--cceeEeecCCchhhhcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      |||+|+||+|.+|++++..|+..|+.++|+++|+++    +.+...|+.+....  ...+ +..+.| ++++++||+||+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~-i~~~~d-~~~l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAE-IKISSD-LSDVAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcE-EEECCC-HHHhCCCCEEEE
Confidence            699999999999999999999999988999999953    35566777765321  1122 222346 467999999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHH
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~  181 (209)
                      ++|.|++++++|.+++..|+++++++++.+.+++|++++|+++||++    ++++++++.+++|++|+||+ |.||++|+
T Consensus        79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd----~~t~~~~~~~g~~~~~viG~gt~LDs~R~  154 (309)
T cd05294          79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVD----VMTYKALKESGFDKNRVFGLGTHLDSLRF  154 (309)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHHHhcCCCHHHEeeccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999    77888888888999999999 57999999


Q ss_pred             HHHHHHHcCCCCCCeeEEEE--eccccccC
Q 028437          182 KTFYAGKANVNVAGLLKLLT--HKNLVFIV  209 (209)
Q Consensus       182 ~~~la~~l~v~~~~v~~~~i--~g~~~~~~  209 (209)
                      +++||+++++++++|+++++  ||+++|++
T Consensus       155 ~~~la~~l~v~~~~v~~~viGeHg~s~~~~  184 (309)
T cd05294         155 KVAIAKHFNVHISEVHTRIIGEHGDSMVPL  184 (309)
T ss_pred             HHHHHHHHCcChHHeEEEEEecCCCceEee
Confidence            99999999999999999999  88888763

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=1.2e-31  Score=230.28  Aligned_cols=173  Identities=32%  Similarity=0.462  Sum_probs=153.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCC-cceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |||+|+|+ |.+|.+++..|+..|+..+|+++|+++  ..+.+.|+.+.... ......  +.++ +++++||+||+++|
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~-~~l~~aDiViita~   76 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDY-ADCKGADVVVITAG   76 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCH-HHhCCCCEEEEccC
Confidence            59999999 999999999999999877999999975  45677888877421 122222  3454 77999999999999


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHHHHH
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~~~~  184 (209)
                      .+++++++|.+++..|+++++++++.+++++|++++++++||++    ++++++++.++||++|+||+ |.||++|++++
T Consensus        77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d----~~~~~~~~~sg~p~~~viG~gt~LDs~R~~~~  152 (308)
T cd05292          77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYL  152 (308)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHHCcCHHHeecccchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999    78888899899999999999 78999999999


Q ss_pred             HHHHcCCCCCCeeEEEE--eccccccC
Q 028437          185 YAGKANVNVAGLLKLLT--HKNLVFIV  209 (209)
Q Consensus       185 la~~l~v~~~~v~~~~i--~g~~~~~~  209 (209)
                      +|+++++++++|+++|+  ||+++|++
T Consensus       153 la~~~~v~~~~v~~~viGeHg~~~~~~  179 (308)
T cd05292         153 LGEHLGVDPRSVHAYIIGEHGDSEVAV  179 (308)
T ss_pred             HHHHhCCCccceeceeeccCCCcEEec
Confidence            99999999999999988  77888764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=99.97  E-value=1.2e-30  Score=223.41  Aligned_cols=170  Identities=36%  Similarity=0.616  Sum_probs=145.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCC--cceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      |+|+|| |.+|+.++..++..++. +|+++|+++.  .+...|+.+....  ...+ +..++| ++++++||+||+++|.
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~-I~~t~d-~~~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTK-VTGTND-YEDIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeE-EEEcCC-HHHhCCCCEEEEecCC
Confidence            689999 99999999999999887 9999999863  3445566654321  1112 222356 4679999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-hhhHHHHHHHH
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFY  185 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~-~lds~r~~~~l  185 (209)
                      |++++++|.+.+..|+++++++++.+++++|++++|++|||++    ++++++++++++|++|++|+| .+|++|+++++
T Consensus        77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~d----i~t~~~~~~s~~~~~rviGlgt~lds~r~~~~l  152 (300)
T cd01339          77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLD----VMTYVAYKASGFPRNRVIGMAGVLDSARFRYFI  152 (300)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCHHHEEEecchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999    888889999999999999997 79999999999


Q ss_pred             HHHcCCCCCCeeEEEE--ecccccc
Q 028437          186 AGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       186 a~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      |+++++++++|+++++  ||+++|+
T Consensus       153 a~~l~v~~~~v~~~v~G~hg~~~~~  177 (300)
T cd01339         153 AEELGVSVKDVQAMVLGGHGDTMVP  177 (300)
T ss_pred             HHHhCCCccceEEEEEeCCCCccee
Confidence            9999999999999999  5556654

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.97  E-value=1.5e-30  Score=199.83  Aligned_cols=139  Identities=42%  Similarity=0.654  Sum_probs=123.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      |||+|+||+|.||++++..|++.++.+||+|+|+++  .++.++|+.|............. +.++++++||+||+++|.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~~~~~~~aDivvitag~   79 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GDYEALKDADIVVITAGV   79 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SSGGGGTTESEEEETTST
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-ccccccccccEEEEeccc
Confidence            699999999999999999999999999999999984  57788999998654322222222 347999999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig  172 (209)
                      ++++|++|.+++..|.++++++++++++++|+++++++|||+|    ++++++++.+++|++|+||
T Consensus        80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd----~~t~~~~~~s~~~~~kviG  141 (141)
T PF00056_consen   80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVD----VMTYVAQKYSGFPPNKVIG  141 (141)
T ss_dssp             SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHH----HHHHHHHHHHTSSGGGEEE
T ss_pred             cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHH----HHHHHHHHhhCcCcccCcC
Confidence            9999999999999999999999999999999999999999999    8899999999999999998

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=99.97  E-value=2e-30  Score=210.36  Aligned_cols=179  Identities=30%  Similarity=0.382  Sum_probs=156.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCc-----cEEEEEecCC----chhHHHhhcCCCCCcceeEeecCCchhhhcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALE   95 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~-----~ev~l~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~   95 (209)
                      |+++.+|+|+||+|.||++++..+++...+     -.++|+|+.+    +.+..++|+++.++. +..+..++|..++|+
T Consensus         1 ~~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~Pl-L~~Vvattd~~~afk   79 (332)
T KOG1496|consen    1 MKEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPL-LKGVVATTDEVEAFK   79 (332)
T ss_pred             CCCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhH-HHhhhcccChhhhhc
Confidence            567889999999999999999998865332     2789999975    467789999997653 333333567889999


Q ss_pred             CCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe
Q 028437           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~  174 (209)
                      +.|+.|...+.|+++||+|.|++..|+++++.-..++++|+ |++++++++||+++++.++.++   ++++|++++.++|
T Consensus        80 dv~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~---ApsIP~kNfs~lT  156 (332)
T KOG1496|consen   80 DVDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKF---APSIPEKNFSALT  156 (332)
T ss_pred             cCcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhh---CCCCchhcchhhh
Confidence            99999999999999999999999999999999999999998 8999999999999988765444   6789999999999


Q ss_pred             hhhHHHHHHHHHHHcCCCCCCeeEEEEeccccc
Q 028437          175 TLDVVRAKTFYAGKANVNVAGLLKLLTHKNLVF  207 (209)
Q Consensus       175 ~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~~  207 (209)
                      .||.+|+..+||.++||+.++|++++||||++.
T Consensus       157 RLDhNRA~~QlA~klgv~~~~VkNviIWGNHSs  189 (332)
T KOG1496|consen  157 RLDHNRALAQLALKLGVPVSDVKNVIIWGNHSS  189 (332)
T ss_pred             hhchhhHHHHHHHhhCCchhhcceeEEeccccc
Confidence            999999999999999999999999999999864

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=99.96  E-value=3.5e-28  Score=208.76  Aligned_cols=144  Identities=28%  Similarity=0.318  Sum_probs=126.0

Q ss_pred             EEEEEecCC----chhHHHhhcCCCCC-cceeEeecCCchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 028437           56 RLALYDIAN----TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCS  130 (209)
Q Consensus        56 ev~l~D~~~----~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~  130 (209)
                      .++|+|+++    ++++++|+.|..+. ......  +++++++++|||+||++||.|+++|++|.+++..|+++++++++
T Consensus        17 ~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~   94 (313)
T TIGR01756        17 CLHLLEIPPALNRLEALAMELEDCAFPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE   94 (313)
T ss_pred             EEEEecCCCccchhHhHHHHHHHhccccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence            899999965    46789999998722 112222  35667899999999999999999999999999999999999999


Q ss_pred             HHHhhCC-CeEEEEecCCCCCcHHHHHHHH-HHhCCCCCCcEEEE-ehhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          131 AIAKYCP-NAIVNMISNPVNSTVPIAAEVF-KKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       131 ~i~~~~p-~~~viv~snP~~~~~~i~~~~~-~~~~~~p~~~vig~-~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      ++++++| ++++|++|||+|    ++++++ ++.++||++ +||+ |.||++|++++||++++++|++|++++||||++
T Consensus        95 ~i~~~a~~~~ivivvtNPvD----v~t~v~~~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG  168 (313)
T TIGR01756        95 ALSEYAKPTVKVLVIGNPVN----TNCLVAMLHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHA  168 (313)
T ss_pred             HHHhhCCCCeEEEEeCCchH----HHHHHHHHHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCC
Confidence            9999995 588999999999    788888 689999998 9999 789999999999999999999999998877764

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>PLN00135 malate dehydrogenase

Probab=99.95  E-value=9e-28  Score=205.79  Aligned_cols=143  Identities=26%  Similarity=0.345  Sum_probs=124.2

Q ss_pred             EEEEEecCC----chhHHHhhcCCCCC--cceeEeecCCchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHH
Q 028437           56 RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLC  129 (209)
Q Consensus        56 ev~l~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~  129 (209)
                      .++|+|+++    ++++++|+.|...+  ..+.   .+++.++++++||+||++||.++++|++|.+++..|++++++++
T Consensus        15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~---~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~   91 (309)
T PLN00135         15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVV---ATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA   91 (309)
T ss_pred             EEEEecCcccccchhhHHHHHHhhhHHhcCCcE---ecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            899999865    46788999998632  1222   13454699999999999999999999999999999999999999


Q ss_pred             HHHHhh-CCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHHHHHHHHHcCCCCCCeeEEEEeccc
Q 028437          130 SAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAGLLKLLTHKNL  205 (209)
Q Consensus       130 ~~i~~~-~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~  205 (209)
                      +.+.++ +|++++|++|||+|    ++++++++.+++|++|+||+ |.||++|++++||+++++++++|+..+||||+
T Consensus        92 ~~i~~~~~p~aivivvsNPvD----v~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeH  165 (309)
T PLN00135         92 SALEKHAAPDCKVLVVANPAN----TNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNH  165 (309)
T ss_pred             HHHHHhcCCCeEEEEeCCcHH----HHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcC
Confidence            999996 89999999999999    88888999999999999999 78999999999999999999999655554444

>PRK15076 alpha-galactosidase; Provisional

Probab=99.89  E-value=1.3e-22  Score=181.25  Aligned_cols=165  Identities=20%  Similarity=0.237  Sum_probs=125.7

Q ss_pred             CCeEEEEcCCCchHHHHHH--HHH-hCCCc-cEEEEEecCCchhH-HHh-hcCC----CCCcceeEeecCCchhhhcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLAL--LMK-LNPLV-SRLALYDIANTPGV-AAD-VGHI----NTRSEVAGYMGNDQLGQALEDS   97 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~--~L~-~~g~~-~ev~l~D~~~~~~~-~~d-l~~~----~~~~~v~~~~~~~d~~~a~~~a   97 (209)
                      |+||+|+|| |.+|.+.+.  .++ ..++. .+|+|+|+++.... ... +.+.    ....++.   .++|++++++||
T Consensus         1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~---~ttD~~eal~dA   76 (431)
T PRK15076          1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKIT---ATTDRREALQGA   76 (431)
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE---EECCHHHHhCCC
Confidence            369999999 999988765  555 34443 39999999862211 111 1111    1122333   256888999999


Q ss_pred             CEEEEcCCCC-CCCC--------------CChhHH--------HHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHH
Q 028437           98 DVVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPI  154 (209)
Q Consensus        98 D~Vi~~ag~~-~~~g--------------~~r~~~--------~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i  154 (209)
                      |+||++++++ .+++              +++.+.        ..+|++.++++++.|+++||++|+|++|||++    +
T Consensus        77 DfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~d----i  152 (431)
T PRK15076         77 DYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMA----M  152 (431)
T ss_pred             CEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHH----H
Confidence            9999999886 3333              334455        89999999999999999999999999999999    8


Q ss_pred             HHHHHHHhCCCCCCcEEEEeh--hhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          155 AAEVFKKAGTYNEKKLFGVTT--LDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       155 ~~~~~~~~~~~p~~~vig~~~--lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      +++.++   ++|+.|+||+|+  +++.   +.+|+.+|+++++|+.++.+=|+.
T Consensus       153 vt~~~~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~  200 (431)
T PRK15076        153 NTWAMN---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHM  200 (431)
T ss_pred             HHHHHh---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecch
Confidence            888887   478899999983  6764   889999999999999999866653

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=99.87  E-value=2e-21  Score=172.95  Aligned_cols=166  Identities=17%  Similarity=0.177  Sum_probs=126.3

Q ss_pred             CeEEEEcCCCchHH-HHHHHHHhC-C-C-ccEEEEEecC-Cchh-----HHHhhcCCCCCcceeEeecCCchhhhcCCCC
Q 028437           29 RKVAVLGAAGGIGQ-PLALLMKLN-P-L-VSRLALYDIA-NTPG-----VAADVGHINTRSEVAGYMGNDQLGQALEDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~-~la~~L~~~-g-~-~~ev~l~D~~-~~~~-----~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD   98 (209)
                      |||+|+|| |+.-. .+...|++. . + .++|+|+|+| +.+-     .+..+.... ...++.. .++|+++|++|||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v~-~t~d~~~al~gad   77 (419)
T cd05296           1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKVH-LTTDRREALEGAD   77 (419)
T ss_pred             CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEEE-EeCCHHHHhCCCC
Confidence            69999999 77633 356666653 2 3 5799999999 4211     111222211 1122322 2568999999999


Q ss_pred             EEEEcCCCCCCCCCChhH--------------------HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHH
Q 028437           99 VVIIPAGVPRKPGMTRDD--------------------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (209)
Q Consensus        99 ~Vi~~ag~~~~~g~~r~~--------------------~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~  158 (209)
                      +||++++++..+++++.+                    +..+|+++++++++.++++||++|+|++|||++    +++++
T Consensus        78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~----ivt~a  153 (419)
T cd05296          78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG----IVTEA  153 (419)
T ss_pred             EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH----HHHHH
Confidence            999998876655443332                    367899999999999999999999999999999    88999


Q ss_pred             HHHhCCCCCCcEEEEehhhHHHHHHHHHHHcCCCCCCeeEEEEeccc
Q 028437          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNL  205 (209)
Q Consensus       159 ~~~~~~~p~~~vig~~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~  205 (209)
                      +++.+   +.|+||+|+. +.|+++++|+.+|+++++|+.++++=|+
T Consensus       154 ~~k~~---~~rviGlc~~-~~r~~~~ia~~lg~~~~~v~~~v~GlNH  196 (419)
T cd05296         154 VLRHT---GDRVIGLCNV-PIGLQRRIAELLGVDPEDVFIDYAGLNH  196 (419)
T ss_pred             HHHhc---cCCEEeeCCc-HHHHHHHHHHHhCCCHHHceEEEEeccc
Confidence            98875   7899999987 4799999999999999999999986455

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=99.87  E-value=5.9e-21  Score=170.27  Aligned_cols=168  Identities=20%  Similarity=0.168  Sum_probs=124.9

Q ss_pred             CeEEEEcCCCch-HHHHHHHHHhCC--C-ccEEEEEecCCch-h----HHHhhcCCCCCcceeEeecCCchhhhcCCCCE
Q 028437           29 RKVAVLGAAGGI-GQPLALLMKLNP--L-VSRLALYDIANTP-G----VAADVGHINTRSEVAGYMGNDQLGQALEDSDV   99 (209)
Q Consensus        29 ~kI~IiGasG~v-G~~la~~L~~~g--~-~~ev~l~D~~~~~-~----~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~   99 (209)
                      |||+|+|| |+. ...++..|+...  + .++|+|+|+|+.. .    .+..+.+.. ...++. ..|+|+++|++||||
T Consensus         1 ~KI~iIGg-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v-~~ttD~~~Al~gADf   77 (425)
T cd05197           1 VKIAIIGG-GSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKF-EKTMDLEDAIIDADF   77 (425)
T ss_pred             CEEEEECC-chHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEE-EEeCCHHHHhCCCCE
Confidence            69999999 765 223566666543  3 5799999998621 1    112222211 112332 225789999999999


Q ss_pred             EEEcCCCCC------------CCCC--------ChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHH
Q 028437          100 VIIPAGVPR------------KPGM--------TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVF  159 (209)
Q Consensus       100 Vi~~ag~~~------------~~g~--------~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~  159 (209)
                      ||.+..+..            +.|.        -...+..+|+++++++++.|+++||++|+|++|||++    ++|+++
T Consensus        78 Vi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~d----i~t~a~  153 (425)
T cd05197          78 VINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAG----EVTEAV  153 (425)
T ss_pred             EEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHH----HHHHHH
Confidence            999954321            2221        1233457899999999999999999999999999999    889999


Q ss_pred             HHhCCCCCCcEEEEehhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          160 KKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       160 ~~~~~~p~~~vig~~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      ++.  +|+.|+||+|.. +.|+++.+|+.+|+++++|+.++++=|++
T Consensus       154 ~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg  197 (425)
T cd05197         154 RRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHG  197 (425)
T ss_pred             HHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCe
Confidence            887  478899999987 89999999999999999999888753553

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.83  E-value=1.4e-19  Score=161.82  Aligned_cols=166  Identities=19%  Similarity=0.142  Sum_probs=126.3

Q ss_pred             CeEEEEcCCCchHHHHHH--HHHhC-CC-ccEEEEEecCCc--hhHHHhhcCC----CCCcceeEeecCCchhhhcCCCC
Q 028437           29 RKVAVLGAAGGIGQPLAL--LMKLN-PL-VSRLALYDIANT--PGVAADVGHI----NTRSEVAGYMGNDQLGQALEDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~--~L~~~-g~-~~ev~l~D~~~~--~~~~~dl~~~----~~~~~v~~~~~~~d~~~a~~~aD   98 (209)
                      +||+|+|| |.+|++++.  .++.. .. ..+|+|+|+++.  .....++.+.    ....++.   .++|+++++++||
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~---~ttD~~eal~~AD   76 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIE---ATTDRREALDGAD   76 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE---EeCCHHHHhcCCC
Confidence            58999999 999998765  44422 22 129999999862  2222222211    1122333   2568889999999


Q ss_pred             EEEEcCCCCCCCCCCh----------------------hHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHH
Q 028437           99 VVIIPAGVPRKPGMTR----------------------DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (209)
Q Consensus        99 ~Vi~~ag~~~~~g~~r----------------------~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~  156 (209)
                      +||++++....++.++                      .....+|.+.+.++++.++++||+++++++|||++    +++
T Consensus        77 ~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~----i~t  152 (423)
T cd05297          77 FVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMA----ELT  152 (423)
T ss_pred             EEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHH----HHH
Confidence            9999987654443322                      23456789999999999999999999999999999    889


Q ss_pred             HHHHHhCCCCCCcEEEEehhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       157 ~~~~~~~~~p~~~vig~~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      +++++.++   .|++|+|+. +.++++.+|+.+++++++|+.++++=|+.
T Consensus       153 ~~~~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~  198 (423)
T cd05297         153 WALNRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHM  198 (423)
T ss_pred             HHHHHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccH
Confidence            99988764   799999975 77899999999999999999999976664

linked to 3D####ucture

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.82  E-value=3.6e-19  Score=159.20  Aligned_cols=168  Identities=20%  Similarity=0.217  Sum_probs=123.3

Q ss_pred             CeEEEEcCCCch-HHHHHHHHHhC--CC-ccEEEEEecCCch-h----HHHhhcCCCCCcceeEeecCCchhhhcCCCCE
Q 028437           29 RKVAVLGAAGGI-GQPLALLMKLN--PL-VSRLALYDIANTP-G----VAADVGHINTRSEVAGYMGNDQLGQALEDSDV   99 (209)
Q Consensus        29 ~kI~IiGasG~v-G~~la~~L~~~--g~-~~ev~l~D~~~~~-~----~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~   99 (209)
                      |||+|||| |+. +..++..|++.  .+ .++|+|+|+|+.. .    .+..+.... ...++.. .|+|+++|++|||+
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~-~Ttdr~eAl~gADf   77 (437)
T cd05298           1 FKIVIAGG-GSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFV-YTTDPEEAFTDADF   77 (437)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEE-EECCHHHHhCCCCE
Confidence            69999999 765 22356666655  23 5799999998621 1    122222211 1123322 25789999999999


Q ss_pred             EEEcCCCCC------------CCCC---C-----hhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHH
Q 028437          100 VIIPAGVPR------------KPGM---T-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVF  159 (209)
Q Consensus       100 Vi~~ag~~~------------~~g~---~-----r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~  159 (209)
                      ||.+..+..            +.|.   +     ..-+..+|++.+.++++.++++||++|+|++|||++    ++++++
T Consensus        78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~----~vt~~~  153 (437)
T cd05298          78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAA----IVAEAL  153 (437)
T ss_pred             EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHH
Confidence            999964432            1221   1     223567999999999999999999999999999999    888898


Q ss_pred             HHhCCCCCCcEEEEehhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          160 KKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       160 ~~~~~~p~~~vig~~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      ++.  +|..|++|+|+.... ++..+|+.+|+++++++..+.+=|+.
T Consensus       154 ~~~--~~~~kviGlC~~~~~-~~~~la~~lg~~~~~v~~~~~GlNH~  197 (437)
T cd05298         154 RRL--FPNARILNICDMPIA-IMDSMAAILGLDRKDLEPDYFGLNHF  197 (437)
T ss_pred             HHH--CCCCCEEEECCcHHH-HHHHHHHHhCCCHHHceEEEEeecch
Confidence            876  788999999985443 67889999999999999888766653

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.81  E-value=6.1e-19  Score=140.21  Aligned_cols=151  Identities=23%  Similarity=0.263  Sum_probs=103.2

Q ss_pred             eEEEEcCCCchHHHH--HHHHHhCC-C-ccEEEEEecCCch-----hHHHhhcCC-CCCcceeEeecCCchhhhcCCCCE
Q 028437           30 KVAVLGAAGGIGQPL--ALLMKLNP-L-VSRLALYDIANTP-----GVAADVGHI-NTRSEVAGYMGNDQLGQALEDSDV   99 (209)
Q Consensus        30 kI~IiGasG~vG~~l--a~~L~~~g-~-~~ev~l~D~~~~~-----~~~~dl~~~-~~~~~v~~~~~~~d~~~a~~~aD~   99 (209)
                      ||+|+|| |++-...  ...+...+ + .++|+|+|+|+.+     ..+..+.+. ..+.++..   ++|+++|++|||+
T Consensus         1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~---ttd~~eAl~gADf   76 (183)
T PF02056_consen    1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEA---TTDRREALEGADF   76 (183)
T ss_dssp             EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEE---ESSHHHHHTTESE
T ss_pred             CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEE---eCCHHHHhCCCCE
Confidence            8999999 8876653  33444433 2 4599999998621     112222221 22333433   5789999999999


Q ss_pred             EEEcCCC------------CCCCCCC----------hhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHH
Q 028437          100 VIIPAGV------------PRKPGMT----------RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE  157 (209)
Q Consensus       100 Vi~~ag~------------~~~~g~~----------r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~  157 (209)
                      ||++..+            |.+.|..          ......++++.+.++++.++++||++|++++|||+.    ++++
T Consensus        77 Vi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~----~vt~  152 (183)
T PF02056_consen   77 VINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMG----IVTE  152 (183)
T ss_dssp             EEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHH----HHHH
T ss_pred             EEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHH----HHHH
Confidence            9999654            2233321          223467899999999999999999999999999999    8888


Q ss_pred             HHHHhCCCCCCcEEEEehhhHHHHHHHHHHHcCC
Q 028437          158 VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANV  191 (209)
Q Consensus       158 ~~~~~~~~p~~~vig~~~lds~r~~~~la~~l~v  191 (209)
                      ++.+.  +|..|++|+|+... -....+|+.||.
T Consensus       153 a~~r~--~~~~k~vGlCh~~~-~~~~~la~~L~~  183 (183)
T PF02056_consen  153 ALSRY--TPKIKVVGLCHGPQ-GTRRQLAKLLGM  183 (183)
T ss_dssp             HHHHH--STTSEEEEE-SHHH-HHHHHHHHHHT-
T ss_pred             HHHHh--CCCCCEEEECCCHH-HHHHHHHHHhCc
Confidence            88876  46689999998654 367889998874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.76  E-value=1.6e-17  Score=146.68  Aligned_cols=168  Identities=23%  Similarity=0.254  Sum_probs=120.1

Q ss_pred             CCCeEEEEcCCCchHHHH--HHHHHhCC-C-ccEEEEEecCCchh-----HHHhhcC-CCCCcceeEeecCCchhhhcCC
Q 028437           27 PDRKVAVLGAAGGIGQPL--ALLMKLNP-L-VSRLALYDIANTPG-----VAADVGH-INTRSEVAGYMGNDQLGQALED   96 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~l--a~~L~~~g-~-~~ev~l~D~~~~~~-----~~~dl~~-~~~~~~v~~~~~~~d~~~a~~~   96 (209)
                      +.+||++||| |+.+...  ...|.+.. + ..+|.|+|+++...     .+..+.+ ...+.++..   ++|+++|++|
T Consensus         2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~---ttd~~eAl~g   77 (442)
T COG1486           2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEA---TTDRREALEG   77 (442)
T ss_pred             CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEE---ecCHHHHhcC
Confidence            3469999999 9888773  23344332 3 46999999986321     1122222 222323332   5689999999


Q ss_pred             CCEEEEcCCCC------------CCCCCC--------hhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHH
Q 028437           97 SDVVIIPAGVP------------RKPGMT--------RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (209)
Q Consensus        97 aD~Vi~~ag~~------------~~~g~~--------r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~  156 (209)
                      ||||+.+..+.            .+.|..        ..-...++++.+.++++.|+++||++|++++|||++    ++|
T Consensus        78 AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~----~vT  153 (442)
T COG1486          78 ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAA----IVT  153 (442)
T ss_pred             CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHH----HHH
Confidence            99999996432            222211        112346899999999999999999999999999999    888


Q ss_pred             HHHHHhCCCCCCcEEEEehhhHHHHHHHHHHHcCCCC-CCeeEEEEeccc
Q 028437          157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV-AGLLKLLTHKNL  205 (209)
Q Consensus       157 ~~~~~~~~~p~~~vig~~~lds~r~~~~la~~l~v~~-~~v~~~~i~g~~  205 (209)
                      ++..+.  +|..|++|+|+.... ....+|+.|++++ ++++.-+-+=|+
T Consensus       154 eAv~r~--~~~~K~VGlCh~~~g-~~~~lAe~L~~~~~~~l~~~~aGlNH  200 (442)
T COG1486         154 EAVRRL--YPKIKIVGLCHGPIG-IAMELAEVLGLEPREDLRYRVAGLNH  200 (442)
T ss_pred             HHHHHh--CCCCcEEeeCCchHH-HHHHHHHHhCCCchhceeEEEeechh
Confidence            898886  464599999986443 6788999999975 999877665454

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=99.22  E-value=7.7e-11  Score=100.16  Aligned_cols=115  Identities=17%  Similarity=0.198  Sum_probs=79.6

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCC-cceeEeecCCchhhhcCCCCEEEEcCCCCCCC
Q 028437           32 AVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKP  110 (209)
Q Consensus        32 ~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~~~  110 (209)
                      +||||+||+|++++..|+++|...+|..+|+.+......++...... ....+++..+++++++++||+|||+|+.....
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~   80 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW   80 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence            48999999999999999999954599999986532221122222111 01111223457889999999999998765433


Q ss_pred             C-CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          111 G-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       111 g-~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      + .+..+++..|+..++++++++.+.+.. ++|+.|..
T Consensus        81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk-rlVytSS~  117 (280)
T PF01073_consen   81 GDYPPEEYYKVNVDGTRNVLEAARKAGVK-RLVYTSSI  117 (280)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEcCc
Confidence            4 456778999999999999999986533 45555543

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=99.20  E-value=2.2e-10  Score=98.44  Aligned_cols=118  Identities=16%  Similarity=0.080  Sum_probs=83.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh----HHHhhcCCCCCc--ceeEeecCCchhhhcCCCCEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG----VAADVGHINTRS--EVAGYMGNDQLGQALEDSDVV  100 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~----~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aD~V  100 (209)
                      ..++|+|+||+||||+.++..|+++||  +|+..-|++...    ...+|....-..  ...++...+.+.+|++|||.|
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgV   82 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGV   82 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEE
Confidence            457999999999999999999999999  999998876321    233344222110  111122345688999999999


Q ss_pred             EEcCCCCCCCCC-ChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          101 IIPAGVPRKPGM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       101 i~~ag~~~~~g~-~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ||+|........ ...+++.-+++++.++++++.+.. ..+-+++|+.
T Consensus        83 fH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS  129 (327)
T KOG1502|consen   83 FHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSS  129 (327)
T ss_pred             EEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEecc
Confidence            999876543332 244788999999999999999976 4444455544

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=99.15  E-value=7.2e-10  Score=99.74  Aligned_cols=114  Identities=13%  Similarity=-0.018  Sum_probs=78.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEE
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      -.+.|||+||||+||||++|+..|+.+|+  +|+.+|+...  ......+...   ..++.+. .+-+++++.++|+|||
T Consensus       117 ~~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~~~~~~~~~~~~~---~~~~~~~-~Di~~~~~~~~D~ViH  190 (436)
T PLN02166        117 GRKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFTGRKENLVHLFGN---PRFELIR-HDVVEPILLEVDQIYH  190 (436)
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCccHhHhhhhccC---CceEEEE-CccccccccCCCEEEE
Confidence            44568999999999999999999999999  9999998531  1111111111   1222221 1123455789999999


Q ss_pred             cCCCCC--CCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          103 PAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       103 ~ag~~~--~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +|+...  ....+..+++..|+..+.++++++++.+  .++|++|.
T Consensus       191 lAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g--~r~V~~SS  234 (436)
T PLN02166        191 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--ARFLLTST  234 (436)
T ss_pred             CceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECc
Confidence            997542  1223456778899999999999999875  36776653

>PLN02427 UDP-apiose/xylose synthase

Probab=99.10  E-value=7.8e-10  Score=97.53  Aligned_cols=116  Identities=14%  Similarity=0.080  Sum_probs=77.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEecCCchhHHHhhcCC---CCCcceeEe----ecCCchhhhcCC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHI---NTRSEVAGY----MGNDQLGQALED   96 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~-g~~~ev~l~D~~~~~~~~~dl~~~---~~~~~v~~~----~~~~d~~~a~~~   96 (209)
                      ..++|||+||||+||+|++++..|+++ ++  +|+.+|+....  ...+...   .....++.+    ....++++++++
T Consensus        11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~--~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~   86 (386)
T PLN02427         11 PIKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDK--IKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKM   86 (386)
T ss_pred             cccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchh--hhhhhccccccCCCCeEEEEcCCCChHHHHHHhhc
Confidence            345579999999999999999999998 57  99999975321  1111111   001112221    112346678889


Q ss_pred             CCEEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +|+|||+|+.....  ..+..+.+..|+..+.++++++++..  .++|++|.
T Consensus        87 ~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS  136 (386)
T PLN02427         87 ADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST  136 (386)
T ss_pred             CCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence            99999999864321  12334556789999999999998754  46777764

>CHL00194 ycf39 Ycf39; Provisional

Probab=99.09  E-value=8.7e-10  Score=94.81  Aligned_cols=109  Identities=11%  Similarity=-0.018  Sum_probs=75.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhcCCCCEEEEcCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      |||+|+||||++|++++..|++.|+  +|+.++|+....  ..+...... .+. ++...++++++++++|+||++++..
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~~v~-~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~   75 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEWGAE-LVYGDLSLPETLPPSFKGVTAIIDASTSR   75 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhcCCE-EEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence            5999999999999999999999999  999999864221  111111111 011 1112345778899999999987643


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      .   .+..++...|.....++++++++.+.. ++|.+|.
T Consensus        76 ~---~~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~Ss  110 (317)
T CHL00194         76 P---SDLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFSI  110 (317)
T ss_pred             C---CCccchhhhhHHHHHHHHHHHHHcCCC-EEEEecc
Confidence            2   122345677889999999999886543 6666664

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=99.08  E-value=1.9e-09  Score=93.97  Aligned_cols=116  Identities=16%  Similarity=0.026  Sum_probs=77.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCC---CCCcceeEee----cCCchhhhcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHI---NTRSEVAGYM----GNDQLGQALEDS   97 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~---~~~~~v~~~~----~~~d~~~a~~~a   97 (209)
                      .++||+|+||+||+|++|+..|+.+|+  +|+.+|+...  .....++...   .....+..+.    ...++++.++++
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~   91 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV   91 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence            346999999999999999999999998  9999998531  1111111100   0001111111    112355668899


Q ss_pred             CEEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        98 D~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      |+|||+|+....+  ..+..++...|+..+.++++.+++.... +++++|
T Consensus        92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~S  140 (348)
T PRK15181         92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAA  140 (348)
T ss_pred             CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEee
Confidence            9999999864322  1345567889999999999999886433 566665

>PLN02206 UDP-glucuronate decarboxylase

Probab=99.07  E-value=2.3e-09  Score=96.67  Aligned_cols=121  Identities=13%  Similarity=-0.042  Sum_probs=80.0

Q ss_pred             cccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEeecCCchhhhcC
Q 028437           18 ARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALE   95 (209)
Q Consensus        18 ~~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~   95 (209)
                      ++.-+-...+.|||+|+||+||||++|+..|+++|+  +|+.+|+...  ..........   .+++.+.. +-+.+++.
T Consensus       109 ~~~~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~~~~~~~~~~---~~~~~i~~-D~~~~~l~  182 (442)
T PLN02206        109 GKIPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRKENVMHHFSN---PNFELIRH-DVVEPILL  182 (442)
T ss_pred             CcCccccccCCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhhhhccC---CceEEEEC-CccChhhc
Confidence            333333334558999999999999999999999999  9999987521  1111111110   12222211 12345677


Q ss_pred             CCCEEEEcCCCCCC--CCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~--~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ++|+|||+|+....  ...+..+++..|+..+.++++++++..  .++|++|.
T Consensus       183 ~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~SS  233 (442)
T PLN02206        183 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTST  233 (442)
T ss_pred             CCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECC
Confidence            89999999975431  123456778899999999999998764  36776654

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.07  E-value=2.3e-09  Score=91.84  Aligned_cols=149  Identities=21%  Similarity=0.275  Sum_probs=100.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hh------HHHhhcCCC------CCcceeEeecCCchhh
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG------VAADVGHIN------TRSEVAGYMGNDQLGQ   92 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~------~~~dl~~~~------~~~~v~~~~~~~d~~~   92 (209)
                      .+||+|+|| |.+|+.++..++..|+  +|+++|+++.   .+      ....+....      ....+..+..++++ +
T Consensus         3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~   78 (307)
T COG1250           3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A   78 (307)
T ss_pred             ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence            469999999 9999999999999779  9999999741   11      111111111      11112222224455 4


Q ss_pred             hcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE
Q 028437           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF  171 (209)
Q Consensus        93 a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vi  171 (209)
                      ++++||+||.++              .+|.++.+++.+.+.+++ |++  |+.||.+..   .++++....  ..|+|++
T Consensus        79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~a--IlASNTSsl---~it~ia~~~--~rper~i  137 (307)
T COG1250          79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDA--ILASNTSSL---SITELAEAL--KRPERFI  137 (307)
T ss_pred             HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCc--EEeeccCCC---CHHHHHHHh--CCchhEE
Confidence            899999999984              578899999999999998 565  469999986   445554443  3567888


Q ss_pred             EEe-------------------hhhHHHHHHHHHHHcCCCC---CCeeEEEE
Q 028437          172 GVT-------------------TLDVVRAKTFYAGKANVNV---AGLLKLLT  201 (209)
Q Consensus       172 g~~-------------------~lds~r~~~~la~~l~v~~---~~v~~~~i  201 (209)
                      |++                   .-++...-..+++.+|..|   .|+.+||+
T Consensus       138 G~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pGFi~  189 (307)
T COG1250         138 GLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPGFIV  189 (307)
T ss_pred             EEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCceeh
Confidence            884                   1255555567778887543   55555553

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.07  E-value=3e-09  Score=93.02  Aligned_cols=113  Identities=20%  Similarity=0.262  Sum_probs=80.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHH-------------HhhcCCC-CCcceeEeecCCchhhhc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-------------ADVGHIN-TRSEVAGYMGNDQLGQAL   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~-------------~dl~~~~-~~~~v~~~~~~~d~~~a~   94 (209)
                      |||+|+|. |+||...+..|++.||  +|+++|+++.+-..             .++.... ...++..   |+|.++++
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f---Ttd~~~a~   74 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF---TTDYEEAV   74 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE---EcCHHHHH
Confidence            79999998 9999999999999999  99999998532111             1111111 1123433   67899999


Q ss_pred             CCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEe--cCCCCCcHH
Q 028437           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVP  153 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~--snP~~~~~~  153 (209)
                      +++|++|++.|.|.++..      ..++..+...++.+.++.+...+++.  |-|++++-.
T Consensus        75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~  129 (414)
T COG1004          75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEE  129 (414)
T ss_pred             hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHH
Confidence            999999999999986632      23457777888888877765334443  677776443

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.05  E-value=5.9e-10  Score=88.87  Aligned_cols=117  Identities=23%  Similarity=0.376  Sum_probs=77.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-----hHHHh----hcC-CCC--------CcceeEeecCCchh
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-----GVAAD----VGH-INT--------RSEVAGYMGNDQLG   91 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-----~~~~d----l~~-~~~--------~~~v~~~~~~~d~~   91 (209)
                      ||+|+|| |.+|..++..++..|+  +|+++|+++..     ....+    +.. ...        ..++..   ++|++
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~   74 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE   74 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence            7999999 9999999999999999  99999998521     11111    111 110        123333   45777


Q ss_pred             hhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 028437           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (209)
Q Consensus        92 ~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~v  170 (209)
                      ++. +||+||.+.              .++++..+++...+++.+ |+++  ++||.+..   .++++....+  .|+|+
T Consensus        75 ~~~-~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~i--lasnTSsl---~i~~la~~~~--~p~R~  132 (180)
T PF02737_consen   75 EAV-DADLVIEAI--------------PEDLELKQELFAELDEICPPDTI--LASNTSSL---SISELAAALS--RPERF  132 (180)
T ss_dssp             GGC-TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSE--EEE--SSS----HHHHHTTSS--TGGGE
T ss_pred             HHh-hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCce--EEecCCCC---CHHHHHhccC--cCceE
Confidence            666 999999995              456789999999999998 5654  58998875   4455554432  56788


Q ss_pred             EEEe
Q 028437          171 FGVT  174 (209)
Q Consensus       171 ig~~  174 (209)
                      +|++
T Consensus       133 ig~H  136 (180)
T PF02737_consen  133 IGMH  136 (180)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8874

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=99.04  E-value=3.7e-09  Score=90.42  Aligned_cols=116  Identities=13%  Similarity=0.054  Sum_probs=76.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCC-CCCcceeE----eecCCchhhhcCCCCEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHI-NTRSEVAG----YMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~-~~~~~v~~----~~~~~d~~~a~~~aD~Vi  101 (209)
                      .++|+|+||+||+|++++..|+++|+  +|++++++.... ....+... .....+..    +....+++++++++|+||
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   81 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF   81 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence            36899999999999999999999999  999888864211 11111110 00011111    112335677889999999


Q ss_pred             EcCCCCCCCCCCh-hHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          102 IPAGVPRKPGMTR-DDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       102 ~~ag~~~~~g~~r-~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      |+|+......... .+++..|+..+.++++++.+...-.++|++|
T Consensus        82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~S  126 (322)
T PLN02662         82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTS  126 (322)
T ss_pred             EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcc
Confidence            9998643221222 3677889999999999988752223566655

>PLN02650 dihydroflavonol-4-reductase

Probab=99.01  E-value=4.3e-09  Score=91.57  Aligned_cols=117  Identities=13%  Similarity=0.029  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcC-CCCCcceeE----eecCCchhhhcCCCCEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGH-INTRSEVAG----YMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~-~~~~~~v~~----~~~~~d~~~a~~~aD~Vi  101 (209)
                      .++|+|+||+||+|++++..|++.|+  +|++++++.... ...++.. ......+..    +.....++++++++|.||
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi   82 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF   82 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence            35899999999999999999999999  999888864211 1111111 000001111    112234667888999999


Q ss_pred             EcCCCCCCCCCC-hhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          102 IPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       102 ~~ag~~~~~g~~-r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |+|+.......+ ..+.+..|+..+.++++.+.+.....++|++|.
T Consensus        83 H~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS  128 (351)
T PLN02650         83 HVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSS  128 (351)
T ss_pred             EeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            999754322222 235778899999999999988653346777654

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.00  E-value=8.6e-09  Score=89.12  Aligned_cols=117  Identities=14%  Similarity=0.116  Sum_probs=76.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEe----ecCCchhhhcCCCCEEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGY----MGNDQLGQALEDSDVVII  102 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~----~~~~d~~~a~~~aD~Vi~  102 (209)
                      +++|+|+||+||+|++++..|++.|+  +|++++++... ....++........+..+    ....++.++++++|+|||
T Consensus         9 ~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   86 (338)
T PLN00198          9 KKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH   86 (338)
T ss_pred             CCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence            46899999999999999999999998  99888776421 111111110000012111    112345677889999999


Q ss_pred             cCCCCCCCCCC-hhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          103 PAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       103 ~ag~~~~~g~~-r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +|+.......+ ..+++..|+..+.++++++.+.....+++++|.
T Consensus        87 ~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS  131 (338)
T PLN00198         87 VATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSS  131 (338)
T ss_pred             eCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeec
Confidence            99854222122 234668899999999999987643346666654

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=98.99  E-value=4e-09  Score=99.47  Aligned_cols=113  Identities=14%  Similarity=0.091  Sum_probs=77.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEecCCchhHHHhhcCCCCCcceeE----eecCCc-hhhhcCCCC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAG----YMGNDQ-LGQALEDSD   98 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~-g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~----~~~~~d-~~~a~~~aD   98 (209)
                      .++.|||+||||+||+|++++..|++. |+  +|+.+|++....  ..+....   .++.    +....+ ++++++++|
T Consensus       312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~--~~~~~~~---~~~~~~gDl~d~~~~l~~~l~~~D  384 (660)
T PRK08125        312 AKRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAI--SRFLGHP---RFHFVEGDISIHSEWIEYHIKKCD  384 (660)
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhh--hhhcCCC---ceEEEeccccCcHHHHHHHhcCCC
Confidence            556689999999999999999999985 78  999999864211  1111111   1111    111112 356788999


Q ss_pred             EEEEcCCCCCC--CCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           99 VVIIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        99 ~Vi~~ag~~~~--~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +|||+|+....  ...+..+++..|+..+.+++++++++.  .++|++|.
T Consensus       385 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~--~~~V~~SS  432 (660)
T PRK08125        385 VVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN--KRIIFPST  432 (660)
T ss_pred             EEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC--CeEEEEcc
Confidence            99999986432  223455678899999999999999875  46666664

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=98.99  E-value=3.6e-09  Score=91.91  Aligned_cols=110  Identities=15%  Similarity=0.150  Sum_probs=74.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEecCCchhHHHhhcCCCCCcceeEee-----cCCchhhhcCCCCEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-----GNDQLGQALEDSDVVI  101 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~-g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~-----~~~d~~~a~~~aD~Vi  101 (209)
                      ||||+||||+||+|++|+..|++. |+  +|+.+|+...  ...++....   .++.+.     ....+.++++++|+||
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~--~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~d~Vi   73 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTD--RLGDLVNHP---RMHFFEGDITINKEWIEYHVKKCDVIL   73 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHH--HHHHhccCC---CeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence            469999999999999999999886 67  9999998532  111222111   111111     0112446678999999


Q ss_pred             EcCCCCCC--CCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          102 IPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       102 ~~ag~~~~--~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |+|+....  ...+....+..|+..+.++++++++..  .++|++|.
T Consensus        74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS  118 (347)
T PRK11908         74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  118 (347)
T ss_pred             ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence            99875422  123445567889999999999998754  47777664

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.97  E-value=8.4e-09  Score=89.25  Aligned_cols=120  Identities=13%  Similarity=0.141  Sum_probs=81.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-H--------HHhhcCCC-----CCcceeEeecCCchhhh
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-V--------AADVGHIN-----TRSEVAGYMGNDQLGQA   93 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~--------~~dl~~~~-----~~~~v~~~~~~~d~~~a   93 (209)
                      ..||+|+|+ |.+|..++..++..|+  +|+++|+++... .        ...+....     ...++..   +++++++
T Consensus         7 i~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~a   80 (321)
T PRK07066          7 IKTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEAC   80 (321)
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHH
Confidence            358999999 9999999999999999  999999975210 0        00111110     0112332   3578899


Q ss_pred             cCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 028437           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (209)
Q Consensus        94 ~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~  173 (209)
                      +++||+|+.++              .+|.+..+++...+.+.+|... |+.||.+..   .++++....  -.|+|++|+
T Consensus        81 v~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l---~~s~la~~~--~~p~R~~g~  140 (321)
T PRK07066         81 VADADFIQESA--------------PEREALKLELHERISRAAKPDA-IIASSTSGL---LPTDFYARA--THPERCVVG  140 (321)
T ss_pred             hcCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe-EEEECCCcc---CHHHHHHhc--CCcccEEEE
Confidence            99999999984              3567788888899999886432 679999874   234443333  235677665

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.96  E-value=5.9e-09  Score=88.35  Aligned_cols=110  Identities=16%  Similarity=0.106  Sum_probs=74.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC-CcceeEeecCCchhhhcCCC-CEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDS-DVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~a-D~Vi~~ag~  106 (209)
                      |+|+|+||+||+|++|+..|++.|+  +|+.+|+......... ..... ...+..   .....+.++++ |.|||+|+.
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~~~~d~~~---~~~~~~~~~~~~d~vih~aa~   74 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEFVVLDLTD---RDLVDELAKGVPDAVIHLAAQ   74 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccceeeecccc---hHHHHHHHhcCCCEEEEcccc
Confidence            3599999999999999999999999  9999998542211111 01100 001111   12345566777 999999987


Q ss_pred             CCCCCCC---hhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          107 PRKPGMT---RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       107 ~~~~g~~---r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ...++..   ..++...|+..++++++++++ +...++++.|
T Consensus        75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~-~~~~~~v~~s  115 (314)
T COG0451          75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARA-AGVKRFVFAS  115 (314)
T ss_pred             CchhhhhhhCHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEeC
Confidence            6544432   245889999999999999998 4444555533

>PLN02214 cinnamoyl-CoA reductase

Probab=98.95  E-value=7.6e-09  Score=90.04  Aligned_cols=111  Identities=14%  Similarity=0.041  Sum_probs=77.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH---HHhhcCCCCCcceeE----eecCCchhhhcCCCCEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---AADVGHINTRSEVAG----YMGNDQLGQALEDSDVV  100 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~---~~dl~~~~~~~~v~~----~~~~~d~~~a~~~aD~V  100 (209)
                      +++|+|+||+||+|++++..|+++|+  +|++++++.....   ...+....  ..+..    +....++.++++++|+|
T Consensus        10 ~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~d~V   85 (342)
T PLN02214         10 GKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGGK--ERLILCKADLQDYEALKAAIDGCDGV   85 (342)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCCC--CcEEEEecCcCChHHHHHHHhcCCEE
Confidence            45899999999999999999999999  9999988642111   11221110  01111    11223567788999999


Q ss_pred             EEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ||+|+...   .+..+.+..|+..+.++++++.+.... +++++|.
T Consensus        86 ih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~SS  127 (342)
T PLN02214         86 FHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITSS  127 (342)
T ss_pred             EEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEecc
Confidence            99998642   234567888999999999999876533 5666654

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.95  E-value=4e-09  Score=89.91  Aligned_cols=123  Identities=14%  Similarity=0.208  Sum_probs=79.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-H--------HHhhcCCC-C-----CcceeEeecCCchh
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-V--------AADVGHIN-T-----RSEVAGYMGNDQLG   91 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~--------~~dl~~~~-~-----~~~v~~~~~~~d~~   91 (209)
                      ++.||+|+|+ |.+|..++..++..|+  +|+++|+++... .        ...+.+.. .     ...+..+..++++ 
T Consensus         4 ~~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-   79 (286)
T PRK07819          4 AIQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-   79 (286)
T ss_pred             CccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-
Confidence            3459999999 9999999999999999  999999985211 0        00111111 0     0011111124576 


Q ss_pred             hhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 028437           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (209)
Q Consensus        92 ~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~v  170 (209)
                      +++++||+||.++              .++.+..+++...+++.+ +.. .|++||.+....   +... ... -.++|+
T Consensus        80 ~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~-~il~snTS~~~~---~~la-~~~-~~~~r~  139 (286)
T PRK07819         80 GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPD-AVLASNTSSIPI---MKLA-AAT-KRPGRV  139 (286)
T ss_pred             HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCC-cEEEECCCCCCH---HHHH-hhc-CCCccE
Confidence            6789999999994              456788888999999987 433 345888877532   2222 222 234566


Q ss_pred             EEE
Q 028437          171 FGV  173 (209)
Q Consensus       171 ig~  173 (209)
                      +|+
T Consensus       140 ~g~  142 (286)
T PRK07819        140 LGL  142 (286)
T ss_pred             EEE
Confidence            665

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.94  E-value=1.1e-08  Score=82.05  Aligned_cols=122  Identities=21%  Similarity=0.302  Sum_probs=69.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC----------------CcceeEeecCCchhh
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLGQ   92 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~----------------~~~v~~~~~~~d~~~   92 (209)
                      |||+|+|. |++|..++..|++.|+  +|+.+|.++.  ....++....                ..++..   ++|.++
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~--~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~   72 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEE--KVEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEE   72 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HH--HHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChH--HHHHHhhccccccccchhhhhccccccccchh---hhhhhh
Confidence            79999999 9999999999999999  9999999852  1112222110                123333   467888


Q ss_pred             hcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-cCCCCCcHHHHHHHHHHhCC
Q 028437           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNSTVPIAAEVFKKAGT  164 (209)
Q Consensus        93 a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~-snP~~~~~~i~~~~~~~~~~  164 (209)
                      +++++|++|+|++.|..++..      -+...+...++.+.++. ++..+++= |-|++++--++..++.+.++
T Consensus        73 ai~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~  140 (185)
T PF03721_consen   73 AIKDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSG  140 (185)
T ss_dssp             HHHH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCC
T ss_pred             hhhccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcc
Confidence            899999999999888655321      12344455555555544 34433333 56677544344556666553

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=98.92  E-value=1.4e-08  Score=87.64  Aligned_cols=116  Identities=15%  Similarity=0.161  Sum_probs=77.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH--HHhhcCCCCCccee-EeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVA-GYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~--~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .++|+|+||+|++|++++..|++.|...+|+++|++.....  ..++...... .+. ++...++++++++++|+||++|
T Consensus         4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~-~v~~Dl~d~~~l~~~~~~iD~Vih~A   82 (324)
T TIGR03589         4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLR-FFIGDVRDKERLTRALRGVDYVVHAA   82 (324)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEE-EEEccCCCHHHHHHHHhcCCEEEECc
Confidence            46899999999999999999998762228999998643211  1112111100 011 1112234667788999999999


Q ss_pred             CCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          105 GVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       105 g~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      |....+  ..+..+++..|+..+.++++++.+.+. .++|++|
T Consensus        83 g~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~-~~iV~~S  124 (324)
T TIGR03589        83 ALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGV-KRVVALS  124 (324)
T ss_pred             ccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEEe
Confidence            865322  234567889999999999999997643 3566665

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=98.90  E-value=3.6e-08  Score=83.56  Aligned_cols=116  Identities=18%  Similarity=0.145  Sum_probs=74.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch---hHHHhhcCCCCCcc-ee-EeecCCchhhhcCC--CCEEEE
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSE-VA-GYMGNDQLGQALED--SDVVII  102 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~---~~~~dl~~~~~~~~-v~-~~~~~~d~~~a~~~--aD~Vi~  102 (209)
                      ||+|+||+|++|++++..|++.+...+|+++|+....   ....++.... ... +. ++...+++.+++++  +|+||+
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~   79 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNP-RYRFVKGDIGDRELVSRLFTEHQPDAVVH   79 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCC-CcEEEEcCCcCHHHHHHHHhhcCCCEEEE
Confidence            5899999999999999999987621288988864211   1111221110 001 11 11122345667776  899999


Q ss_pred             cCCCCCC--CCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          103 PAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       103 ~ag~~~~--~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +|+....  .......++..|+..+.++++.+.+...+.+++++|.
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss  125 (317)
T TIGR01181        80 FAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIST  125 (317)
T ss_pred             cccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeec
Confidence            9986431  1223456778899999999999988655556776653

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PLN02572 UDP-sulfoquinovose synthase

Probab=98.89  E-value=1.7e-08  Score=91.04  Aligned_cols=116  Identities=19%  Similarity=0.190  Sum_probs=72.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hh---------------HHHhhcCCCCCcceeEe----
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG---------------VAADVGHINTRSEVAGY----   84 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~---------------~~~dl~~~~~~~~v~~~----   84 (209)
                      ++|||+||||+||||++|+..|+++|+  +|+++|+...   ..               ....+.+.. ...+..+    
T Consensus        46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~Dl  122 (442)
T PLN02572         46 KKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVGDI  122 (442)
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEECCC
Confidence            446899999999999999999999998  9999985311   00               000000000 0011111    


Q ss_pred             ecCCchhhhcC--CCCEEEEcCCCCCCCC--CCh---hHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           85 MGNDQLGQALE--DSDVVIIPAGVPRKPG--MTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        85 ~~~~d~~~a~~--~aD~Vi~~ag~~~~~g--~~r---~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ....+++++++  ++|+|||+|+....+-  .+.   ...+..|+..+.++++.+++.+...+++.+|
T Consensus       123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~S  190 (442)
T PLN02572        123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLG  190 (442)
T ss_pred             CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEe
Confidence            11223455666  4899999986543211  111   2345789999999999999877555666554

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=98.88  E-value=1.8e-08  Score=87.34  Aligned_cols=115  Identities=9%  Similarity=-0.001  Sum_probs=72.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch---hHHHhhcCCC---CCcceeE----eecCCchhhhcCC--
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHIN---TRSEVAG----YMGNDQLGQALED--   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~---~~~~dl~~~~---~~~~v~~----~~~~~d~~~a~~~--   96 (209)
                      ++|+||||+||+|++++..|++.|+  +|+++|+....   .....+....   ....+..    +....++++++++  
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   78 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK   78 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence            4899999999999999999999999  99999986421   1111111000   0001111    1112235566774  


Q ss_pred             CCEEEEcCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCC--CeEEEEec
Q 028437           97 SDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMIS  145 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p--~~~viv~s  145 (209)
                      +|+|||+|+......  .........|+..+.++++++.+.+-  ..+++++|
T Consensus        79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~S  131 (343)
T TIGR01472        79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQAS  131 (343)
T ss_pred             CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEec
Confidence            599999998653221  12334556788899999999988652  23566554

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=98.88  E-value=3.6e-08  Score=84.63  Aligned_cols=117  Identities=15%  Similarity=0.086  Sum_probs=75.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCC-CCCcceeE----eecCCchhhhcCCCCEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHI-NTRSEVAG----YMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~-~~~~~v~~----~~~~~d~~~a~~~aD~Vi  101 (209)
                      .++|+|+||+|++|++++..|++.|+  +|++..++... .....+... .....+..    +....+++++++++|+||
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi   82 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF   82 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence            36999999999999999999999999  89877665421 111222110 00111221    112234677789999999


Q ss_pred             EcCCCCCCC-CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          102 IPAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       102 ~~ag~~~~~-g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |+|+..... .....+++..|+..+.++++.+++...-.++|++|.
T Consensus        83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS  128 (322)
T PLN02986         83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSS  128 (322)
T ss_pred             EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecc
Confidence            999864211 112234678899999999999886532236666654

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=98.87  E-value=2.3e-08  Score=85.37  Aligned_cols=113  Identities=15%  Similarity=0.112  Sum_probs=77.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      |||+|+||+|++|++++..|++.|+  +|+++++++...  .++..........++....++.++++++|.||++++...
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~~   76 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAADYR   76 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccCCceEEEeeCCCHHHHHHHHhCCCEEEEeceecc
Confidence            5899999999999999999999998  999999964221  111111111000111112346678889999999987543


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       109 ~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ....+..+....|+..+.++++.+.+.... +++++|.
T Consensus        77 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS  113 (328)
T TIGR03466        77 LWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTSS  113 (328)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEec
Confidence            233445677889999999999999876433 5666654

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=98.87  E-value=1.1e-08  Score=87.33  Aligned_cols=99  Identities=18%  Similarity=0.203  Sum_probs=68.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC--CCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aD~Vi~~ag~  106 (209)
                      |||+|+||+||+|++++..|++.|   +|+.+|+... ....|+.+            ...++++++  ++|+|||+|+.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~~~Dl~d------------~~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DYCGDFSN------------PEGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cccCCCCC------------HHHHHHHHHhcCCCEEEECCcc
Confidence            589999999999999999999888   5777877421 00011111            123455666  58999999986


Q ss_pred             CCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       107 ~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ....  ..+.......|+..+.++++++++.+  .+++.+|
T Consensus        65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g--~~~v~~S  103 (299)
T PRK09987         65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVG--AWVVHYS  103 (299)
T ss_pred             CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEc
Confidence            5322  12344556789999999999998864  3566554

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=98.87  E-value=1.9e-08  Score=85.30  Aligned_cols=105  Identities=17%  Similarity=0.106  Sum_probs=73.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcC--CC-CCcceeEeecCCchhhhcC--CCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH--IN-TRSEVAGYMGNDQLGQALE--DSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~--~~-~~~~v~~~~~~~d~~~a~~--~aD~Vi~~  103 (209)
                      |+|+|+|++|+||++.+..|++.|+  +|+++|+-. .+....+..  .. ...++.+   ..-+.+.++  ..|.|||.
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~-~g~~~~v~~~~~~f~~gDi~D---~~~L~~vf~~~~idaViHF   74 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLS-NGHKIALLKLQFKFYEGDLLD---RALLTAVFEENKIDAVVHF   74 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCC-CCCHHHhhhccCceEEecccc---HHHHHHHHHhcCCCEEEEC
Confidence            6899999999999999999999999  999999953 111111111  11 0111211   112344443  68999999


Q ss_pred             CCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCe
Q 028437          104 AGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNA  139 (209)
Q Consensus       104 ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~  139 (209)
                      ||....+.  .....|+..|+-.+..++++|.+.+.+.
T Consensus        75 Aa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~  112 (329)
T COG1087          75 AASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKK  112 (329)
T ss_pred             ccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCE
Confidence            98654222  3577899999999999999999988654

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=98.86  E-value=5.5e-08  Score=84.50  Aligned_cols=107  Identities=18%  Similarity=0.160  Sum_probs=67.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeE----eecCCchhhhcCC--CCEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG----YMGNDQLGQALED--SDVVI  101 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~----~~~~~d~~~a~~~--aD~Vi  101 (209)
                      |+||+|+||+||+|++++..|+++|+ ..++++|+.........+........+..    +...+++++++++  +|+||
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi   79 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM   79 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence            35899999999999999999999986 23556776422111111111100001111    1112345566664  89999


Q ss_pred             EcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhh
Q 028437          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKY  135 (209)
Q Consensus       102 ~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~  135 (209)
                      |+||.....  .....++...|+..+.++++.+.++
T Consensus        80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~  115 (355)
T PRK10217         80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAY  115 (355)
T ss_pred             ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHh
Confidence            999875321  1234567889999999999999874

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.86  E-value=2.5e-09  Score=87.14  Aligned_cols=128  Identities=16%  Similarity=0.286  Sum_probs=88.5

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc------hhHHHhhcCC------CCC--------cceeE
Q 028437           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT------PGVAADVGHI------NTR--------SEVAG   83 (209)
Q Consensus        24 ~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~------~~~~~dl~~~------~~~--------~~v~~   83 (209)
                      .|.++..|+|+|| |.+|+.+++..++.|+  .|.++|.++.      ++....+.+.      +-+        ..+..
T Consensus         7 ~~~~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r   83 (298)
T KOG2304|consen    7 NMAEIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR   83 (298)
T ss_pred             ccccccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence            3566679999999 9999999999999999  9999999751      1111111110      000        01111


Q ss_pred             eecCCchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhC
Q 028437           84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (209)
Q Consensus        84 ~~~~~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~  163 (209)
                      +..+++..+++.++|+||.+              ..+|+++.+.+.+.+++.|+.. -|+.||.+...   ++.++... 
T Consensus        84 i~~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~-~il~tNTSSl~---lt~ia~~~-  144 (298)
T KOG2304|consen   84 IKTSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSS-TILATNTSSLS---LTDIASAT-  144 (298)
T ss_pred             HHHcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccc-eEEeeccccee---HHHHHhhc-
Confidence            12246788899999999887              5789999999999999999654 35689998863   34443322 


Q ss_pred             CCCCCcEEEEe
Q 028437          164 TYNEKKLFGVT  174 (209)
Q Consensus       164 ~~p~~~vig~~  174 (209)
                       -.+.|+.|++
T Consensus       145 -~~~srf~GlH  154 (298)
T KOG2304|consen  145 -QRPSRFAGLH  154 (298)
T ss_pred             -cChhhhceee
Confidence             3566888874

>PLN02583 cinnamoyl-CoA reductase

Probab=98.85  E-value=3.6e-08  Score=84.05  Aligned_cols=114  Identities=12%  Similarity=0.056  Sum_probs=76.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH----HHhhcCCCCCcceeE----eecCCchhhhcCCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV----AADVGHINTRSEVAG----YMGNDQLGQALEDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~----~~dl~~~~~~~~v~~----~~~~~d~~~a~~~aD~V  100 (209)
                      ++|+|+||+|++|++++..|+++|+  +|++++++.....    ..++....  ..+..    +....++.+++.++|.|
T Consensus         7 k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~~~~~~~l~~~d~v   82 (297)
T PLN02583          7 KSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCEE--ERLKVFDVDPLDYHSILDALKGCSGL   82 (297)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccCC--CceEEEEecCCCHHHHHHHHcCCCEE
Confidence            4799999999999999999999999  9999887531111    12221111  11211    11223467889999999


Q ss_pred             EEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ++.++.+........+++..|+..+.++++++.+...-.++|++|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS  128 (297)
T PLN02583         83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSS  128 (297)
T ss_pred             EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Confidence            9877544321122456788999999999999987632246666654

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=98.85  E-value=2.6e-08  Score=87.66  Aligned_cols=117  Identities=13%  Similarity=0.008  Sum_probs=74.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +...|||+|+||+||+|++++..|.+.|+  +|+.+|+.... ...+.... ......++....++.++++++|+|||+|
T Consensus        18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~~~~~~~~-~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         18 PSEKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-HMSEDMFC-HEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-cccccccc-ceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            33557999999999999999999999999  99999985311 00000000 0000001111123455678999999998


Q ss_pred             CCCCCCC---CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          105 GVPRKPG---MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       105 g~~~~~g---~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +.....+   .+....+..|+..+.++++++++.... ++|++|.
T Consensus        94 a~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk-~~V~~SS  137 (370)
T PLN02695         94 ADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVK-RFFYASS  137 (370)
T ss_pred             cccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCC-EEEEeCc
Confidence            7532111   122345678999999999999876543 5666654

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=98.84  E-value=9.1e-08  Score=82.15  Aligned_cols=117  Identities=13%  Similarity=0.077  Sum_probs=76.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcC-CCCCcceeE----eecCCchhhhcCCCCEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGH-INTRSEVAG----YMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~-~~~~~~v~~----~~~~~d~~~a~~~aD~Vi  101 (209)
                      .++|+|+||+|++|++++..|++.|+  +|++.++++... ....+.. ......+..    +....+++++++++|+||
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            46899999999999999999999999  998887764211 1111111 010011211    112234667788999999


Q ss_pred             EcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       102 ~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ++||.....  .....+.+..|+..+.++++.+.+.....+++++|.
T Consensus        83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS  129 (325)
T PLN02989         83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSS  129 (325)
T ss_pred             EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecc
Confidence            999864221  122345678899999999999987643346666654

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=98.83  E-value=3.9e-08  Score=85.65  Aligned_cols=117  Identities=13%  Similarity=0.033  Sum_probs=74.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH--HHhhcCCCCCcceeEee----cCCchhhhcCCCC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYM----GNDQLGQALEDSD   98 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~--~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aD   98 (209)
                      ....|+|+|+||+||+|++++..|++.|+  +|++++++.....  ..++...   ..+..+.    ...+++++++++|
T Consensus         7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~d   81 (353)
T PLN02896          7 ESATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKEG---DRLRLFRADLQEEGSFDEAVKGCD   81 (353)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhccC---CeEEEEECCCCCHHHHHHHHcCCC
Confidence            34457999999999999999999999998  9999888642211  1122111   1122111    1123566778999


Q ss_pred             EEEEcCCCCCCC---C-CChhH-----HHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           99 VVIIPAGVPRKP---G-MTRDD-----LFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        99 ~Vi~~ag~~~~~---g-~~r~~-----~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      .|||+|+.....   . .+..+     .+..|+..+.++++++.+.....+++++|.
T Consensus        82 ~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS  138 (353)
T PLN02896         82 GVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSS  138 (353)
T ss_pred             EEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEec
Confidence            999999864321   1 12223     334456889999999887642346666654

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=98.82  E-value=9.7e-08  Score=83.05  Aligned_cols=116  Identities=17%  Similarity=0.111  Sum_probs=75.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-H-HhhcCCCCCccee-EeecCCchhhhcCC--CCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-A-ADVGHINTRSEVA-GYMGNDQLGQALED--SDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-~-~dl~~~~~~~~v~-~~~~~~d~~~a~~~--aD~Vi~~  103 (209)
                      ++|+|+||+|++|++++..|++.|+  +|+.+++++.... . ..+........+. ++....++.+.+++  .|+||++
T Consensus         5 k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~   82 (349)
T TIGR02622         5 KKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHL   82 (349)
T ss_pred             CEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEEC
Confidence            5899999999999999999999999  9999998653111 1 1111110000011 11112234455654  5999999


Q ss_pred             CCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          104 AGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       104 ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |+.+...  ..+....+..|+....++++++.+.+...+++++|.
T Consensus        83 A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS  127 (349)
T TIGR02622        83 AAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS  127 (349)
T ss_pred             CcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            9854321  123456778999999999999987653346777764

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=98.81  E-value=5.3e-08  Score=89.72  Aligned_cols=117  Identities=19%  Similarity=0.158  Sum_probs=77.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcC-----CCC--CcceeE----eecCCchhhh
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGH-----INT--RSEVAG----YMGNDQLGQA   93 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~-----~~~--~~~v~~----~~~~~d~~~a   93 (209)
                      ....|+|+||+|++|+.++..|++.|+  +|++++++....  ...++.+     ...  ...+..    +...++++++
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            445899999999999999999999999  999999975321  1111111     000  001111    1112345677


Q ss_pred             cCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        94 ~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +.++|+||+++|.......+....+..|...+.++++++.+.+. .+||++|.
T Consensus       157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agV-gRIV~VSS  208 (576)
T PLN03209        157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKV-NHFILVTS  208 (576)
T ss_pred             hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCC-CEEEEEcc
Confidence            89999999999875432222334567788999999999987643 46666663

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=98.80  E-value=1.8e-08  Score=85.79  Aligned_cols=119  Identities=21%  Similarity=0.260  Sum_probs=72.7

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhc----CCCCCcc----eeEeecCCchhhhcC--CCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVG----HINTRSE----VAGYMGNDQLGQALE--DSD   98 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~----~~~~~~~----v~~~~~~~d~~~a~~--~aD   98 (209)
                      |+||||+|++|+.|+..|++.+. .+|+++|+++.  .....++.    +......    +.++.+...+..+++  +.|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence            78999999999999999999875 48999999862  22233342    1111101    111111223567788  999


Q ss_pred             EEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEe----cCCCCC
Q 028437           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI----SNPVNS  150 (209)
Q Consensus        99 ~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~----snP~~~  150 (209)
                      +|||+|+.-..|  .....+.+..|+-.++++++++.+++.+..+.+-    .||.+.
T Consensus        80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptnv  137 (293)
T PF02719_consen   80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNV  137 (293)
T ss_dssp             EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SH
T ss_pred             EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcH
Confidence            999998764322  2356778899999999999999998766544444    478875

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PLN02778 3,5-epimerase/4-reductase

Probab=98.79  E-value=5.8e-08  Score=83.08  Aligned_cols=88  Identities=17%  Similarity=0.141  Sum_probs=63.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC--CCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aD~Vi~~ag  105 (209)
                      .|||+|+||+||+|++++..|.++|+  +|+....+.        .+..            .++..++  ++|+|||+|+
T Consensus         9 ~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~--------~~~~------------~v~~~l~~~~~D~ViH~Aa   66 (298)
T PLN02778          9 TLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRL--------ENRA------------SLEADIDAVKPTHVFNAAG   66 (298)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCcc--------CCHH------------HHHHHHHhcCCCEEEECCc
Confidence            37999999999999999999999998  876543221        1100            0112222  6899999998


Q ss_pred             CCCCCC-----CChhHHHHHHHHHHHHHHHHHHhhCC
Q 028437          106 VPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCP  137 (209)
Q Consensus       106 ~~~~~g-----~~r~~~~~~N~~~~~~i~~~i~~~~p  137 (209)
                      ....+.     .+..+++..|+..+.++++.+++.+.
T Consensus        67 ~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv  103 (298)
T PLN02778         67 VTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGL  103 (298)
T ss_pred             ccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            753221     24567889999999999999998753

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.78  E-value=5.4e-08  Score=82.86  Aligned_cols=120  Identities=21%  Similarity=0.380  Sum_probs=75.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHH----hhc-----CCCC---------CcceeEeecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAA----DVG-----HINT---------RSEVAGYMGND   88 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~----dl~-----~~~~---------~~~v~~~~~~~   88 (209)
                      .+||+|+|+ |.+|..++..+++.|+  +|+++|+++... ...    .+.     ....         ...+..   ++
T Consensus         3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~   76 (287)
T PRK08293          3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT   76 (287)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence            469999999 9999999999999999  999999975210 000    000     0000         012222   45


Q ss_pred             chhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 028437           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (209)
Q Consensus        89 d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~  168 (209)
                      |+++++++||+||.++.              ++.+..+++++.+.++.++.. ++++|.+..   .++++.....  .++
T Consensus        77 d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~-ii~sntSt~---~~~~~~~~~~--~~~  136 (287)
T PRK08293         77 DLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKT-IFATNSSTL---LPSQFAEATG--RPE  136 (287)
T ss_pred             CHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCC-EEEECcccC---CHHHHHhhcC--Ccc
Confidence            77888999999999952              335666777888888775432 346777664   2233433321  244


Q ss_pred             cEEEE
Q 028437          169 KLFGV  173 (209)
Q Consensus       169 ~vig~  173 (209)
                      |++|+
T Consensus       137 r~vg~  141 (287)
T PRK08293        137 KFLAL  141 (287)
T ss_pred             cEEEE
Confidence            66654

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.78  E-value=3.2e-08  Score=94.06  Aligned_cols=124  Identities=17%  Similarity=0.182  Sum_probs=84.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hh--HHH----hhcCCC------CCcceeEeecCCchh
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG--VAA----DVGHIN------TRSEVAGYMGNDQLG   91 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~--~~~----dl~~~~------~~~~v~~~~~~~d~~   91 (209)
                      +..||+|+|| |.+|..++..++..|+  +|+++|.++.   .+  ...    .+.+..      ....+..+..++++ 
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  387 (714)
T TIGR02437       312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-  387 (714)
T ss_pred             ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-
Confidence            4469999999 9999999999999999  9999999752   11  010    111110      00011112224565 


Q ss_pred             hhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE
Q 028437           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF  171 (209)
Q Consensus        92 ~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vi  171 (209)
                      +++++||+||.++              .++++..+++...+++.++.. .|++||.+..   .++++....  -.|+|++
T Consensus       388 ~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~-~ilasnTS~l---~i~~ia~~~--~~p~r~i  447 (714)
T TIGR02437       388 AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVRED-AILASNTSTI---SISLLAKAL--KRPENFC  447 (714)
T ss_pred             HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCC-cEEEECCCCC---CHHHHHhhc--CCcccEE
Confidence            6789999999994              467899999999999998533 3469999886   345554433  2467888


Q ss_pred             EEe
Q 028437          172 GVT  174 (209)
Q Consensus       172 g~~  174 (209)
                      |++
T Consensus       448 g~H  450 (714)
T TIGR02437       448 GMH  450 (714)
T ss_pred             EEe
Confidence            884

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=98.77  E-value=5.2e-08  Score=84.57  Aligned_cols=106  Identities=17%  Similarity=0.149  Sum_probs=66.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee----EeecCCchhhhcC--CCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA----GYMGNDQLGQALE--DSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~----~~~~~~d~~~a~~--~aD~Vi~  102 (209)
                      |||+|+||+|++|++++..|+++|. ..++.+|+.........+........+.    ++...+++.++++  ++|+|||
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence            5899999999999999999999886 1466677532111111111100001111    1111224455665  4899999


Q ss_pred             cCCCCCC--CCCChhHHHHHHHHHHHHHHHHHHhh
Q 028437          103 PAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKY  135 (209)
Q Consensus       103 ~ag~~~~--~g~~r~~~~~~N~~~~~~i~~~i~~~  135 (209)
                      +|+....  ......+++..|+..+.++++.+.++
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~  114 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY  114 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHh
Confidence            9986432  12234678899999999999999875

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.77  E-value=3.5e-08  Score=93.87  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=84.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hh--H----HHhhcCCC-C--------CcceeEeecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG--V----AADVGHIN-T--------RSEVAGYMGND   88 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~--~----~~dl~~~~-~--------~~~v~~~~~~~   88 (209)
                      +..||+|+|| |.+|..++..++..|+  +|+++|+++.   .+  .    ...+.... .        ..+++.   ++
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~  385 (715)
T PRK11730        312 PVKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP---TL  385 (715)
T ss_pred             ccceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eC
Confidence            3468999999 9999999999999999  9999999752   11  0    01111110 0        013332   45


Q ss_pred             chhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 028437           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (209)
Q Consensus        89 d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~  168 (209)
                      |+ +++++||+||.++              .++++..+++...++++++.. .|++||.+..   .++++.....  .|+
T Consensus       386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~-~ilasNTSsl---~i~~la~~~~--~p~  444 (715)
T PRK11730        386 DY-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVRED-TILASNTSTI---SISLLAKALK--RPE  444 (715)
T ss_pred             CH-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCC-cEEEEcCCCC---CHHHHHhhcC--CCc
Confidence            66 6789999999984              467899999999999998543 3469999885   3455544332  466


Q ss_pred             cEEEE
Q 028437          169 KLFGV  173 (209)
Q Consensus       169 ~vig~  173 (209)
                      |++|+
T Consensus       445 r~~g~  449 (715)
T PRK11730        445 NFCGM  449 (715)
T ss_pred             cEEEE
Confidence            88886

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=98.77  E-value=1.1e-07  Score=82.03  Aligned_cols=115  Identities=19%  Similarity=0.150  Sum_probs=73.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCC-CCcc-ee-EeecCCchhhhcC--CCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN-TRSE-VA-GYMGNDQLGQALE--DSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~-~~~~-v~-~~~~~~d~~~a~~--~aD~Vi  101 (209)
                      |||+|+||+|++|++++..|++.|+  +|+++++...  ......+.+.. .... +. ++....++.++++  ++|+||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv   78 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVI   78 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence            5899999999999999999999998  9999986421  11111111110 0001 11 1111122444554  689999


Q ss_pred             EcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       102 ~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ++|+.....  .....+++..|+..+.++++.+++... .+++++|.
T Consensus        79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~v~~Ss  124 (338)
T PRK10675         79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANV-KNLIFSSS  124 (338)
T ss_pred             ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEecc
Confidence            998865321  123457788999999999999987643 35666553

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=98.75  E-value=5.7e-08  Score=84.07  Aligned_cols=116  Identities=12%  Similarity=-0.018  Sum_probs=73.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch---hHHHhhcCC--CCCcceeE----eecCCchhhhcCC--
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHI--NTRSEVAG----YMGNDQLGQALED--   96 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~---~~~~dl~~~--~~~~~v~~----~~~~~d~~~a~~~--   96 (209)
                      .++|+|+||+|++|++++..|++.|+  +|++++++...   .....+...  .....+..    +....++++++++  
T Consensus         6 ~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   83 (340)
T PLN02653          6 RKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK   83 (340)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence            46899999999999999999999999  99999885321   111112110  00011111    1112234555664  


Q ss_pred             CCEEEEcCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCC----eEEEEec
Q 028437           97 SDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPN----AIVNMIS  145 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~----~~viv~s  145 (209)
                      .|+|||+|+......  .+....+..|+..+.++++.+.+....    .+++++|
T Consensus        84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~S  138 (340)
T PLN02653         84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAG  138 (340)
T ss_pred             CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEec
Confidence            599999998743221  123445678999999999999887643    2555554

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=98.75  E-value=1.3e-07  Score=84.02  Aligned_cols=120  Identities=19%  Similarity=0.122  Sum_probs=78.8

Q ss_pred             ccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh----HHHhhcCCCCCcc-ee-EeecCCchhhhc
Q 028437           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG----VAADVGHINTRSE-VA-GYMGNDQLGQAL   94 (209)
Q Consensus        21 ~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~----~~~dl~~~~~~~~-v~-~~~~~~d~~~a~   94 (209)
                      |-+++...+||+|+||+|++|++++..|+++|+  +|++++++....    ...++........ +. ++...+++++++
T Consensus        53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~  130 (390)
T PLN02657         53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVL  130 (390)
T ss_pred             ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHH
Confidence            777888889999999999999999999999999  999999864211    0111111000011 11 111223456666


Q ss_pred             C----CCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           95 E----DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        95 ~----~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +    ++|+||++++.+...   ..+....|.....++++++++... .+++++|.
T Consensus       131 ~~~~~~~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~gv-~r~V~iSS  182 (390)
T PLN02657        131 FSEGDPVDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVGA-KHFVLLSA  182 (390)
T ss_pred             HHhCCCCcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcCC-CEEEEEee
Confidence            6    599999998754211   123456788889999999987653 35666663

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=98.74  E-value=4.5e-08  Score=82.16  Aligned_cols=98  Identities=19%  Similarity=0.224  Sum_probs=68.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCCCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKP  110 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~~~  110 (209)
                      |+|+||+|++|++++..|++.|+  +|+.+++++.....  +...    .+..... .+..++++++|+||++|+.+...
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~----~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~   71 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGAN--TKWE----GYKPWAP-LAESEALEGADAVINLAGEPIAD   71 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCc--ccce----eeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence            58999999999999999999998  99999997532111  1000    0111111 23457789999999999875422


Q ss_pred             C----CChhHHHHHHHHHHHHHHHHHHhhCC
Q 028437          111 G----MTRDDLFNINAGIVKDLCSAIAKYCP  137 (209)
Q Consensus       111 g----~~r~~~~~~N~~~~~~i~~~i~~~~p  137 (209)
                      +    ....++...|+..++++++.+++...
T Consensus        72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~  102 (292)
T TIGR01777        72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQ  102 (292)
T ss_pred             ccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence            2    12345677899999999999998754

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=98.73  E-value=8.8e-08  Score=81.62  Aligned_cols=109  Identities=16%  Similarity=0.196  Sum_probs=67.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCc-hhhhc-----CCCCEEEEcC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ-LGQAL-----EDSDVVIIPA  104 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d-~~~a~-----~~aD~Vi~~a  104 (209)
                      |+|+||+||+|++|+..|++.|+ ..+.++|+.........+.+.+    +......++ +++++     .++|+|||+|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~----~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLD----IADYMDKEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhh----hhhhhhHHHHHHHHhcccccCCccEEEECc
Confidence            78999999999999999999997 2355566643211111111111    111000011 22222     3689999999


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +.+.....+...++..|+..+.++++.+.+..  .++|+.|.
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~--~~~i~~SS  116 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLERE--IPFLYASS  116 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcC--CcEEEEcc
Confidence            86443333445577889999999999998764  35666643

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.73  E-value=8.2e-08  Score=87.41  Aligned_cols=125  Identities=18%  Similarity=0.225  Sum_probs=88.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCccee----EeecCCchhhhcCC--
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVA----GYMGNDQLGQALED--   96 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~----~~~~~~d~~~a~~~--   96 (209)
                      +-..++|.||||+|++|+.++..+++.+. .+|+++|+++.+  ....++.+.....++.    ++.+.+.++.++++  
T Consensus       247 ~~~gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~k  325 (588)
T COG1086         247 MLTGKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHK  325 (588)
T ss_pred             HcCCCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCC
Confidence            33446899999999999999999988864 699999998632  1223344421111222    22223346788998  


Q ss_pred             CCEEEEcCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec----CCCCC
Q 028437           97 SDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS----NPVNS  150 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s----nP~~~  150 (209)
                      .|+|+|+|+.-..|-  .+..+-...|+-.++++++++.++.-+..+.+-|    ||.+.
T Consensus       326 vd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNv  385 (588)
T COG1086         326 VDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNV  385 (588)
T ss_pred             CceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchH
Confidence            999999998765554  3567778999999999999999887665554443    78775

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.73  E-value=2.3e-07  Score=87.60  Aligned_cols=119  Identities=13%  Similarity=-0.005  Sum_probs=74.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee-cCC---chhhhc--CCCCEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GND---QLGQAL--EDSDVVI  101 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a~--~~aD~Vi  101 (209)
                      +|||+|+||+||||++++..|++.+...+|+.+|+.........+........++.+. +-.   .+.+.+  .++|+||
T Consensus         6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~Vi   85 (668)
T PLN02260          6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTIM   85 (668)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEEE
Confidence            4699999999999999999999874222899998742111111111100001122211 011   122233  6899999


Q ss_pred             EcCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          102 IPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       102 ~~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |+|+......  .+..++...|+..+.++++++++.+.-.++|++|.
T Consensus        86 HlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS  132 (668)
T PLN02260         86 HFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVST  132 (668)
T ss_pred             ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence            9998753221  23456778999999999999988754456777763

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=98.72  E-value=7.4e-08  Score=75.82  Aligned_cols=95  Identities=25%  Similarity=0.264  Sum_probs=68.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee----cCCchhhhcCCCCEEEEcCCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      |+|+||+|++|+.++..|+++|+  +|+++-|++.+..  +  ..    .++.+.    ..+++.++++++|.||+++|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~~--~--~~----~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKAE--D--SP----GVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGHH--H--CT----TEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhcc--c--cc----ccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            78999999999999999999998  9999999753222  2  11    122211    123467889999999999876


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      +.+           ..+.++++++++++.+. .+++++|..
T Consensus        71 ~~~-----------~~~~~~~~~~a~~~~~~-~~~v~~s~~   99 (183)
T PF13460_consen   71 PPK-----------DVDAAKNIIEAAKKAGV-KRVVYLSSA   99 (183)
T ss_dssp             TTT-----------HHHHHHHHHHHHHHTTS-SEEEEEEET
T ss_pred             hcc-----------ccccccccccccccccc-ccceeeecc
Confidence            542           16778899999988653 366666643

...

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.72  E-value=3.6e-07  Score=78.71  Aligned_cols=69  Identities=26%  Similarity=0.477  Sum_probs=52.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC--C--------CCcceeEeecCCchhhhcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--N--------TRSEVAGYMGNDQLGQALEDS   97 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~--~--------~~~~v~~~~~~~d~~~a~~~a   97 (209)
                      ++||+|+|+ |..|.+|+..|.++|+  +|.+|.+++.  ...++...  .        .+..+.   .++|+++++++|
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~~--~~~~i~~~~~N~~yLp~i~lp~~l~---at~Dl~~a~~~a   72 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDEE--IVAEINETRENPKYLPGILLPPNLK---ATTDLAEALDGA   72 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCHH--HHHHHHhcCcCccccCCccCCcccc---cccCHHHHHhcC
Confidence            479999999 9999999999999999  9999999852  22223322  1        122233   357899999999


Q ss_pred             CEEEEcC
Q 028437           98 DVVIIPA  104 (209)
Q Consensus        98 D~Vi~~a  104 (209)
                      |+|++..
T Consensus        73 d~iv~av   79 (329)
T COG0240          73 DIIVIAV   79 (329)
T ss_pred             CEEEEEC
Confidence            9999984

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.72  E-value=3.8e-08  Score=93.81  Aligned_cols=120  Identities=18%  Similarity=0.238  Sum_probs=83.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hh--HHH----hhcCCC-C--------CcceeEeecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG--VAA----DVGHIN-T--------RSEVAGYMGND   88 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~--~~~----dl~~~~-~--------~~~v~~~~~~~   88 (209)
                      +..||+|+|| |.+|..++..++..|+  +|+++|+++.   .+  ...    .+.... .        ..+++.   ++
T Consensus       334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~  407 (737)
T TIGR02441       334 PVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP---TL  407 (737)
T ss_pred             cccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eC
Confidence            4468999999 9999999999999999  9999999752   11  010    011100 0        013332   45


Q ss_pred             chhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 028437           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (209)
Q Consensus        89 d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~  168 (209)
                      |+ +++++||+||.++              .+|.+..+++...++++++.. .|++||.+...   ++++.....  .|+
T Consensus       408 ~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~-~ilasNTSsl~---i~~la~~~~--~p~  466 (737)
T TIGR02441       408 DY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPH-CIIASNTSALP---IKDIAAVSS--RPE  466 (737)
T ss_pred             CH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCC-cEEEEcCCCCC---HHHHHhhcC--Ccc
Confidence            66 6799999999984              567899999999999998543 34589998863   344444332  457


Q ss_pred             cEEEE
Q 028437          169 KLFGV  173 (209)
Q Consensus       169 ~vig~  173 (209)
                      |++|+
T Consensus       467 r~ig~  471 (737)
T TIGR02441       467 KVIGM  471 (737)
T ss_pred             ceEEE
Confidence            88886

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=98.72  E-value=8.5e-08  Score=80.67  Aligned_cols=95  Identities=21%  Similarity=0.270  Sum_probs=70.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCC--CEEEEcCCCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDS--DVVIIPAGVP  107 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a--D~Vi~~ag~~  107 (209)
                      ||+|+||+|++|++++..|++.|+  +|+++++..     .|+.+            .++++++++++  |+||++++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~------------~~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTD------------PEALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCC------------HHHHHHHHHhCCCCEEEECCccc
Confidence            689999999999999999999999  999998741     12221            12456667766  9999999865


Q ss_pred             CCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          108 RKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       108 ~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ..+.  ......+..|+..+.++++.+.+...  +++++|
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S   99 (287)
T TIGR01214        62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS   99 (287)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            3221  23456678899999999999987543  566655

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=98.71  E-value=9.5e-08  Score=83.54  Aligned_cols=119  Identities=19%  Similarity=0.195  Sum_probs=79.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCcceeE----eecCCchhhhcCCCCEE
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAG----YMGNDQLGQALEDSDVV  100 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~~v~~----~~~~~d~~~a~~~aD~V  100 (209)
                      .++.+++|+||+||+|++++..|.+++...+|.++|..+. .....+.... ....++.    +....++..+++++ .|
T Consensus         2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~V   79 (361)
T KOG1430|consen    2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VV   79 (361)
T ss_pred             CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eE
Confidence            4567999999999999999999999985559999999653 1111111110 0111211    11234578899999 77


Q ss_pred             EEcCCCCC-CCCC-ChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          101 IIPAGVPR-KPGM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       101 i~~ag~~~-~~g~-~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      +|+|..+. .... .+......|+..++++.+++.+.+-. ++|+.|+.
T Consensus        80 vh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~-~lIYtSs~  127 (361)
T KOG1430|consen   80 VHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK-RLIYTSSA  127 (361)
T ss_pred             EEeccccCccccccchhhheeecchhHHHHHHHHHHhCCC-EEEEecCc
Confidence            77755432 2222 47778899999999999999987643 45555543

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.69  E-value=1e-07  Score=81.33  Aligned_cols=101  Identities=23%  Similarity=0.357  Sum_probs=63.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-H-HHhh--------cCCCCC--------cceeEeecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-V-AADV--------GHINTR--------SEVAGYMGND   88 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~-~~dl--------~~~~~~--------~~v~~~~~~~   88 (209)
                      +.+||+|+|+ |.+|..++..|+..|+  +|+++|+++... . ...+        .....+        ..+..   ++
T Consensus         3 ~~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~   76 (292)
T PRK07530          3 AIKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---AT   76 (292)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eC
Confidence            3469999999 9999999999999999  999999975211 1 0000        011000        11222   34


Q ss_pred             chhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCC
Q 028437           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (209)
Q Consensus        89 d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~  150 (209)
                      ++ +++++||+||.+...              +....+.+.+.+.+.. +++.  ++||.++.
T Consensus        77 ~~-~~~~~aD~Vieavpe--------------~~~~k~~~~~~l~~~~~~~~i--i~s~ts~~  122 (292)
T PRK07530         77 DL-EDLADCDLVIEAATE--------------DETVKRKIFAQLCPVLKPEAI--LATNTSSI  122 (292)
T ss_pred             CH-HHhcCCCEEEEcCcC--------------CHHHHHHHHHHHHhhCCCCcE--EEEcCCCC
Confidence            55 568999999999521              2233455556677766 4553  34677664

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.69  E-value=8.6e-08  Score=90.99  Aligned_cols=120  Identities=18%  Similarity=0.261  Sum_probs=82.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHH-hCCCccEEEEEecCCc---hh--HH----HhhcCCC-C--------CcceeEeecC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANT---PG--VA----ADVGHIN-T--------RSEVAGYMGN   87 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~-~~g~~~ev~l~D~~~~---~~--~~----~dl~~~~-~--------~~~v~~~~~~   87 (209)
                      +..||+|+|| |.+|..++..++ ..|+  +|+++|.++.   .+  ..    ..+.... .        ..+++.   +
T Consensus       303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~  376 (699)
T TIGR02440       303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG---T  376 (699)
T ss_pred             cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE---e
Confidence            4469999999 999999999988 4899  9999999752   11  00    0111110 0        012332   4


Q ss_pred             CchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 028437           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (209)
Q Consensus        88 ~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~  167 (209)
                      +++ +++++||+||.++              .++++..+++...++++++.. .|++||.+...   ++++....  -.|
T Consensus       377 ~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~-~ilasnTS~l~---i~~la~~~--~~p  435 (699)
T TIGR02440       377 TDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAH-TIFASNTSSLP---IGQIAAAA--SRP  435 (699)
T ss_pred             CCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCC-cEEEeCCCCCC---HHHHHHhc--CCc
Confidence            566 6799999999984              457899999999999999543 34689998863   34444333  246


Q ss_pred             CcEEEE
Q 028437          168 KKLFGV  173 (209)
Q Consensus       168 ~~vig~  173 (209)
                      +|++|+
T Consensus       436 ~r~~g~  441 (699)
T TIGR02440       436 ENVIGL  441 (699)
T ss_pred             ccEEEE
Confidence            678776

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.68  E-value=9.4e-08  Score=90.88  Aligned_cols=120  Identities=19%  Similarity=0.312  Sum_probs=83.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHH-hCCCccEEEEEecCCc---hh--HH----HhhcCCC-C--------CcceeEeecC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANT---PG--VA----ADVGHIN-T--------RSEVAGYMGN   87 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~-~~g~~~ev~l~D~~~~---~~--~~----~dl~~~~-~--------~~~v~~~~~~   87 (209)
                      +..||+|+|| |.+|..++..++ ..|+  +|+++|.++.   .+  ..    ..+.... .        ..+++.   +
T Consensus       308 ~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~  381 (708)
T PRK11154        308 PVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---T  381 (708)
T ss_pred             cccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---e
Confidence            4469999999 999999999998 7899  9999999741   11  01    0111110 0        113333   4


Q ss_pred             CchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 028437           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (209)
Q Consensus        88 ~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~~~~i~~~~~~~~~~~p  166 (209)
                      +++ +++++||+||.++              .+|.+..+++...+++++ |++  |++||.+..   .++++....  -.
T Consensus       382 ~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l---~i~~la~~~--~~  439 (708)
T PRK11154        382 TDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHT--IFASNTSSL---PIGQIAAAA--AR  439 (708)
T ss_pred             CCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCC---CHHHHHHhc--Cc
Confidence            566 6899999999984              567899999999999998 454  458999886   344444433  24


Q ss_pred             CCcEEEEe
Q 028437          167 EKKLFGVT  174 (209)
Q Consensus       167 ~~~vig~~  174 (209)
                      |+|++|++
T Consensus       440 p~r~ig~H  447 (708)
T PRK11154        440 PEQVIGLH  447 (708)
T ss_pred             ccceEEEe
Confidence            56788773

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.68  E-value=4.2e-07  Score=82.60  Aligned_cols=121  Identities=14%  Similarity=0.164  Sum_probs=75.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC-------CCCc-----ceeEeecCCchhhhcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-------NTRS-----EVAGYMGNDQLGQALE   95 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~-------~~~~-----~v~~~~~~~d~~~a~~   95 (209)
                      +|||+|+|+ |++|..++..|++.|+.-+|+.+|+++.+  ...++..       ....     .-..+..+++++++++
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~--v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~   77 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPR--IDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVA   77 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHH--HHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHh
Confidence            579999999 99999999999988532289999998521  2222111       1000     0001222457778899


Q ss_pred             CCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEe--cCCCCCcH
Q 028437           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTV  152 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~--snP~~~~~  152 (209)
                      +||++|+|++.|........+ ..-++..+.+.++.+.++.++..+|+.  |-|++++-
T Consensus        78 ~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~  135 (473)
T PLN02353         78 EADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE  135 (473)
T ss_pred             cCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH
Confidence            999999999988643210000 022445667777777776654444443  67777543

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.68  E-value=8.8e-08  Score=87.80  Aligned_cols=121  Identities=17%  Similarity=0.235  Sum_probs=77.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-----H----HhhcCCCC---------CcceeEeecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----A----ADVGHINT---------RSEVAGYMGND   88 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-----~----~dl~~~~~---------~~~v~~~~~~~   88 (209)
                      +..||+|+|+ |.+|..++..++..|+  +|+++|+++....     .    ..+.....         -.++..   ++
T Consensus         6 ~i~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~   79 (507)
T PRK08268          6 SIATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VE   79 (507)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eC
Confidence            4468999999 9999999999999999  9999999752110     0    01111110         012332   34


Q ss_pred             chhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 028437           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (209)
Q Consensus        89 d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~  168 (209)
                      ++ +++++||+||.++              .++.+..+.+...+++.++.. .|++||.+....   +++....  -.++
T Consensus        80 ~~-~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~-ailasntStl~i---~~la~~~--~~p~  138 (507)
T PRK08268         80 AL-ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPD-CILATNTSSLSI---TAIAAAL--KHPE  138 (507)
T ss_pred             CH-HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCC-cEEEECCCCCCH---HHHHhhc--CCcc
Confidence            65 5578999999984              345566677777888887433 244778776532   3333322  2356


Q ss_pred             cEEEEe
Q 028437          169 KLFGVT  174 (209)
Q Consensus       169 ~vig~~  174 (209)
                      |++|+.
T Consensus       139 r~~G~h  144 (507)
T PRK08268        139 RVAGLH  144 (507)
T ss_pred             cEEEEe
Confidence            777764

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=98.68  E-value=9e-08  Score=75.85  Aligned_cols=123  Identities=13%  Similarity=0.138  Sum_probs=78.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHH-Hh--hcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-AD--VGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~-~d--l~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |||+||||||.+|+.++.++.++||  ||+.+-|++.+-.+ ..  +.+.+       +...+.+.+++.+-|+||.+.|
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~~~~~i~q~D-------ifd~~~~a~~l~g~DaVIsA~~   71 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAARQGVTILQKD-------IFDLTSLASDLAGHDAVISAFG   71 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhccccccceeeccc-------ccChhhhHhhhcCCceEEEecc
Confidence            7999999999999999999999999  99999998632111 11  11111       1112344678999999999977


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~  168 (209)
                      .+. ++.  .   ..-.+..+.+.+.++. +...++++++....+.+.. +..+.+.|.||++
T Consensus        72 ~~~-~~~--~---~~~~k~~~~li~~l~~-agv~RllVVGGAGSL~id~-g~rLvD~p~fP~e  126 (211)
T COG2910          72 AGA-SDN--D---ELHSKSIEALIEALKG-AGVPRLLVVGGAGSLEIDE-GTRLVDTPDFPAE  126 (211)
T ss_pred             CCC-CCh--h---HHHHHHHHHHHHHHhh-cCCeeEEEEcCccceEEcC-CceeecCCCCchh
Confidence            653 221  1   1122335666666664 3466889998776542211 1233455666654

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=98.67  E-value=4.1e-08  Score=79.79  Aligned_cols=112  Identities=18%  Similarity=0.188  Sum_probs=73.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCC--CEEEEcCCCCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDS--DVVIIPAGVPR  108 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a--D~Vi~~ag~~~  108 (209)
                      |+|+||+|++|++++..|+++|+  +|+.+.+............ ......-.+...+++++++++.  |.||++|+...
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~-~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~~   77 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKL-NVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFSS   77 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHT-TEEEEESETTSHHHHHHHHHHHTESEEEEEBSSSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccc-eEEEEEeeccccccccccccccCceEEEEeecccc
Confidence            78999999999999999999999  8777766542221111111 1000000011122456667766  99999998753


Q ss_pred             C--CCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          109 K--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       109 ~--~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      .  ...+..++...|+...+++++.+++... .++++.|.
T Consensus        78 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS  116 (236)
T PF01370_consen   78 NPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSS  116 (236)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccc-cccccccc
Confidence            1  1134567788999999999999998876 56666654

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PLN02686 cinnamoyl-CoA reductase

Probab=98.67  E-value=1.4e-07  Score=83.06  Aligned_cols=118  Identities=10%  Similarity=0.091  Sum_probs=74.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCC---C-CCcceeE----eecCCchhhhcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHI---N-TRSEVAG----YMGNDQLGQALEDS   97 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~---~-~~~~v~~----~~~~~d~~~a~~~a   97 (209)
                      ++++|+|+||+||+|++++..|+++|+  +|+++.++.... ...++...   . ....+..    +...+++.++++++
T Consensus        52 ~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~~  129 (367)
T PLN02686         52 EARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDGC  129 (367)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHhc
Confidence            346899999999999999999999999  998876653211 11122100   0 0001111    11123466778999


Q ss_pred             CEEEEcCCCCCCCCC--ChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           98 DVVIIPAGVPRKPGM--TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        98 D~Vi~~ag~~~~~g~--~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |.||++++.....+.  ...++...|+..+.++++++.+...-.++|++|.
T Consensus       130 d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS  180 (367)
T PLN02686        130 AGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSS  180 (367)
T ss_pred             cEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEecc
Confidence            999999876432221  2234567799999999999987532225666654

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.67  E-value=1.1e-07  Score=87.13  Aligned_cols=121  Identities=21%  Similarity=0.296  Sum_probs=78.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH---------HHhhcCCCC---------CcceeEeecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---------AADVGHINT---------RSEVAGYMGND   88 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~---------~~dl~~~~~---------~~~v~~~~~~~   88 (209)
                      +..||+|+|+ |.+|..++..++..|+  +|+++|+++....         ...+.....         ..++..   ++
T Consensus         4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~   77 (503)
T TIGR02279         4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VT   77 (503)
T ss_pred             CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eC
Confidence            4468999999 9999999999999999  9999999752110         011111110         012332   34


Q ss_pred             chhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 028437           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (209)
Q Consensus        89 d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~  168 (209)
                      ++ +++++||+||.++              .++.+..+.+...+.+.++.. .|++||.+....   +++.....  .+.
T Consensus        78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~-~IlasnTStl~i---~~iA~~~~--~p~  136 (503)
T TIGR02279        78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPAD-TIIASNTSSLSI---TAIAAGLA--RPE  136 (503)
T ss_pred             CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCC-eEEEECCCCCCH---HHHHHhcC--ccc
Confidence            66 5678999999984              345567777788888888654 346888887533   33333321  244


Q ss_pred             cEEEEe
Q 028437          169 KLFGVT  174 (209)
Q Consensus       169 ~vig~~  174 (209)
                      +++|++
T Consensus       137 r~~G~H  142 (503)
T TIGR02279       137 RVAGLH  142 (503)
T ss_pred             ceEEEe
Confidence            666653

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=98.67  E-value=6.4e-08  Score=81.41  Aligned_cols=115  Identities=16%  Similarity=0.096  Sum_probs=76.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ....++|+|+||+||||+||+..|+.+|+  +|..+|.... +....+.+......++.... +-.+..+.++|.|+++|
T Consensus        24 p~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~ft-g~k~n~~~~~~~~~fel~~h-dv~~pl~~evD~IyhLA   99 (350)
T KOG1429|consen   24 PSQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYFT-GRKENLEHWIGHPNFELIRH-DVVEPLLKEVDQIYHLA   99 (350)
T ss_pred             CCCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEecccc-cchhhcchhccCcceeEEEe-echhHHHHHhhhhhhhc
Confidence            34558999999999999999999999999  9999998532 11122233222222222111 11246788999999998


Q ss_pred             CCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          105 GVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       105 g~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      .....++  .+..+.+..|.-.+.++...+++.+  ++++.+|
T Consensus       100 apasp~~y~~npvktIktN~igtln~lglakrv~--aR~l~aS  140 (350)
T KOG1429|consen  100 APASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLAS  140 (350)
T ss_pred             cCCCCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEee
Confidence            7543332  2344556677777788888877765  6777665

>PRK06194 hypothetical protein; Provisional

Probab=98.65  E-value=3.8e-07  Score=76.77  Aligned_cols=115  Identities=17%  Similarity=0.166  Sum_probs=68.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee----cCCchhhhcC-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM----GNDQLGQALE-------   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~-------   95 (209)
                      ++|+|+||+|++|++++..|+++|.  +|+++|++..  .....++....  ..+..+.    ..++++++++       
T Consensus         7 k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g   82 (287)
T PRK06194          7 KVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERFG   82 (287)
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999998  9999998642  12222332211  1121111    1122333333       


Q ss_pred             CCCEEEEcCCCCCCC---CCCh---hHHHHHHHHHHHHHHHH----HHhhCCC-----eEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSA----IAKYCPN-----AIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~r---~~~~~~N~~~~~~i~~~----i~~~~p~-----~~viv~snP  147 (209)
                      ..|+||++||.....   ..+.   ...+..|+.....+.+.    +.+.+..     +.++++|..
T Consensus        83 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~  149 (287)
T PRK06194         83 AVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASM  149 (287)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCCh
Confidence            479999999875321   1122   23466777666665555    5444332     567776643

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.65  E-value=1.6e-07  Score=79.68  Aligned_cols=102  Identities=20%  Similarity=0.343  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH---------HHhhcCCC-CC--------cceeEeecCCc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---------AADVGHIN-TR--------SEVAGYMGNDQ   89 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~---------~~dl~~~~-~~--------~~v~~~~~~~d   89 (209)
                      ++||+|+|+ |.+|..++..++..|+  +|+++|+++....         ..++.+.. ..        ..+..   +++
T Consensus         3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~   76 (282)
T PRK05808          3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTD   76 (282)
T ss_pred             ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence            358999999 9999999999999999  9999999752110         01111111 00        12222   346


Q ss_pred             hhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCc
Q 028437           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST  151 (209)
Q Consensus        90 ~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~  151 (209)
                      + +++++||+||.++              ..+....+++.+.+.++++...+ ++||.++..
T Consensus        77 ~-~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~i-l~s~ts~~~  122 (282)
T PRK05808         77 L-DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAI-LATNTSSLS  122 (282)
T ss_pred             H-HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcE-EEECCCCCC
Confidence            5 5689999999995              23456667888888888753333 378777753

>PRK07201 short chain dehydrogenase; Provisional

Probab=98.64  E-value=4e-07  Score=85.35  Aligned_cols=112  Identities=13%  Similarity=0.100  Sum_probs=71.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHH--hCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee----c------CCchhhhcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMK--LNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----G------NDQLGQALED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~--~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~----~------~~d~~~a~~~   96 (209)
                      |||+|+||+||+|++++..|+  ..++  +|++++++.......++........++.+.    .      ..+++ .+++
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~-~l~~   77 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIA-ELGD   77 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHH-HhcC
Confidence            589999999999999999999  4677  999999964222221211100000111111    0      01222 2489


Q ss_pred             CCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +|+|||+|+.... ..+..++...|+..++++++.+.+... .+++++|
T Consensus        78 ~D~Vih~Aa~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~v~~S  124 (657)
T PRK07201         78 IDHVVHLAAIYDL-TADEEAQRAANVDGTRNVVELAERLQA-ATFHHVS  124 (657)
T ss_pred             CCEEEECceeecC-CCCHHHHHHHHhHHHHHHHHHHHhcCC-CeEEEEe
Confidence            9999999986432 234456778899999999999987643 3555554

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=98.64  E-value=2.2e-07  Score=78.94  Aligned_cols=110  Identities=14%  Similarity=0.109  Sum_probs=69.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhh----cCCCCEEEEcCCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA----LEDSDVVIIPAGV  106 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a----~~~aD~Vi~~ag~  106 (209)
                      |+|+||+|++|++++..|.+.|+ .+|.++++........++........+.   ..+.++..    +.++|+|||+|+.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~D~vvh~A~~   76 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLVIADYID---KEDFLDRLEKGAFGKIEAIFHQGAC   76 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhheeeeccCc---chhHHHHHHhhccCCCCEEEECccc
Confidence            68999999999999999999995 2688888753211111111110000111   01122222    2589999999986


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ......+..+.+..|+..+.++++.+.+...  +++++|.
T Consensus        77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS  114 (314)
T TIGR02197        77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYASS  114 (314)
T ss_pred             cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEcc
Confidence            5333334556778999999999999987653  5666663

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.64  E-value=1.3e-07  Score=73.59  Aligned_cols=117  Identities=24%  Similarity=0.371  Sum_probs=72.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCC--------CCcceeEeecCCchhhhcCCCCEEE
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--------TRSEVAGYMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~--------~~~~v~~~~~~~d~~~a~~~aD~Vi  101 (209)
                      ||+|+|| |..|.+++..|..+|+  +|.+|++++.......-.+..        .+..+.   .++|++++++++|+|+
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~---~t~dl~~a~~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIK---ATTDLEEALEDADIII   74 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEE---EESSHHHHHTT-SEEE
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccc---cccCHHHHhCcccEEE
Confidence            8999999 9999999999999998  999999975211111111111        111222   2568999999999999


Q ss_pred             EcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCC-CCcHHHHHHHHHHhCCCCCCcE
Q 028437          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV-NSTVPIAAEVFKKAGTYNEKKL  170 (209)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~-~~~~~i~~~~~~~~~~~p~~~v  170 (209)
                      ++.  |              ....+++++.+..+- ++..++.++.-- .....++++++.+.  +|..++
T Consensus        75 iav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~--~~~~~~  127 (157)
T PF01210_consen   75 IAV--P--------------SQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEI--LPIPRI  127 (157)
T ss_dssp             E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHH--HSSCGE
T ss_pred             ecc--c--------------HHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHH--hhhcce
Confidence            984  2              133467778888776 445555554322 11223556777664  344444

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PLN02240 UDP-glucose 4-epimerase

Probab=98.62  E-value=5.3e-07  Score=78.09  Aligned_cols=115  Identities=18%  Similarity=0.139  Sum_probs=73.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hh---HHHhhcCCCCCcceeE----eecCCchhhhcC--C
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PG---VAADVGHINTRSEVAG----YMGNDQLGQALE--D   96 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~---~~~dl~~~~~~~~v~~----~~~~~d~~~a~~--~   96 (209)
                      .+||+|+||+|++|++++..|++.|+  +|+++|+...  ..   ...+..... ...+..    +....+++++++  +
T Consensus         5 ~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~l~~~~~~~~   81 (352)
T PLN02240          5 GRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDL-GDNLVFHKVDLRDKEALEKVFASTR   81 (352)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhccc-CccceEEecCcCCHHHHHHHHHhCC
Confidence            46999999999999999999999998  9999987421  11   111111100 001111    111223444454  6


Q ss_pred             CCEEEEcCCCCCCC-C-CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKP-G-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~-g-~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +|+||++|+..... . ....+++..|+....++++.+++.... +++++|.
T Consensus        82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss  132 (352)
T PLN02240         82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCK-KLVFSSS  132 (352)
T ss_pred             CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEcc
Confidence            89999999864321 1 234567889999999999998875433 5666653

>PRK12320 hypothetical protein; Provisional

Probab=98.59  E-value=3.6e-07  Score=86.34  Aligned_cols=101  Identities=14%  Similarity=0.076  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhcCCCCEEEEcCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      |||+|+||+||+|++++..|++.|+  +|+++|+.+..     ....... .+. ++.. ..+.++++++|+|||+++..
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~ve-~v~~Dl~d-~~l~~al~~~D~VIHLAa~~   71 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPRVD-YVCASLRN-PVLQELAGEADAVIHLAPVD   71 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCCce-EEEccCCC-HHHHHHhcCCCEEEEcCccC
Confidence            5899999999999999999999999  99999985321     1111110 011 1111 12456678999999999753


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      .  .    +....|+..+.++++.+++.+.  ++|++|.
T Consensus        72 ~--~----~~~~vNv~Gt~nLleAA~~~Gv--RiV~~SS  102 (699)
T PRK12320         72 T--S----APGGVGITGLAHVANAAARAGA--RLLFVSQ  102 (699)
T ss_pred             c--c----chhhHHHHHHHHHHHHHHHcCC--eEEEEEC
Confidence            2  1    1124789999999999987653  5666663

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.59  E-value=2.5e-07  Score=78.87  Aligned_cols=117  Identities=15%  Similarity=0.283  Sum_probs=72.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-H-Hhhc----------CCCC---------CcceeEeecC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-A-ADVG----------HINT---------RSEVAGYMGN   87 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-~-~dl~----------~~~~---------~~~v~~~~~~   87 (209)
                      .||+|+|+ |.+|..++..++..|+  +|+++|+++.... . ..+.          +...         ..++..   +
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~   77 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT---S   77 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe---e
Confidence            58999999 9999999999999999  9999999752110 0 0111          1000         011221   3


Q ss_pred             CchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 028437           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (209)
Q Consensus        88 ~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p-~~~viv~snP~~~~~~i~~~~~~~~~~~p  166 (209)
                      +++ +++++||+||.++.              .+.+..+++.+.+.++++ +++  ++||.....   ++++.....  .
T Consensus        78 ~~~-~~~~~aDlVieav~--------------e~~~~k~~~~~~l~~~~~~~~i--l~S~tsg~~---~~~la~~~~--~  135 (291)
T PRK06035         78 TSY-ESLSDADFIVEAVP--------------EKLDLKRKVFAELERNVSPETI--IASNTSGIM---IAEIATALE--R  135 (291)
T ss_pred             CCH-HHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeE--EEEcCCCCC---HHHHHhhcC--C
Confidence            455 67899999999952              223455777777887775 443  367776642   233333221  3


Q ss_pred             CCcEEEE
Q 028437          167 EKKLFGV  173 (209)
Q Consensus       167 ~~~vig~  173 (209)
                      ++|++|+
T Consensus       136 ~~r~ig~  142 (291)
T PRK06035        136 KDRFIGM  142 (291)
T ss_pred             cccEEEE
Confidence            4566666

>PRK05865 hypothetical protein; Provisional

Probab=98.59  E-value=4.3e-07  Score=87.47  Aligned_cols=104  Identities=18%  Similarity=0.106  Sum_probs=73.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhcCCCCEEEEcCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      |||+|+||+|++|++++..|+..|+  +|++++++....    +.. ... .+. ++...++++++++++|+|||+|+..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~v~-~v~gDL~D~~~l~~al~~vD~VVHlAa~~   72 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-SAD-FIAADIRDATAVESAMTGADVVAHCAWVR   72 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-Cce-EEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence            5899999999999999999999999  999999863211    110 110 111 1111235667789999999998754


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~  148 (209)
                      . +      ....|+..+.++++++++.+. .+++++|.+.
T Consensus        73 ~-~------~~~vNv~GT~nLLeAa~~~gv-kr~V~iSS~~  105 (854)
T PRK05865         73 G-R------NDHINIDGTANVLKAMAETGT-GRIVFTSSGH  105 (854)
T ss_pred             c-c------hHHHHHHHHHHHHHHHHHcCC-CeEEEECCcH
Confidence            2 1      357899999999999987653 3677777654

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.58  E-value=3.1e-07  Score=78.44  Aligned_cols=106  Identities=24%  Similarity=0.302  Sum_probs=65.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH---------HHhhcCCCC-C-----cceeEeecCCc
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---------AADVGHINT-R-----SEVAGYMGNDQ   89 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~---------~~dl~~~~~-~-----~~v~~~~~~~d   89 (209)
                      |.+..||+|+|+ |.+|..++..++..|+  +|+++|+++....         ..++.+... .     ........+++
T Consensus         1 ~~~~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   77 (295)
T PLN02545          1 MAEIKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTN   77 (295)
T ss_pred             CCCcCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCC
Confidence            344568999999 9999999999999998  9999999752110         011211110 0     00111111234


Q ss_pred             hhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCC
Q 028437           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (209)
Q Consensus        90 ~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~  150 (209)
                      . +++++||+||.++              .++.+....+.+.+.+.. +++  +++||.++.
T Consensus        78 ~-~~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~--il~s~tS~i  122 (295)
T PLN02545         78 L-EELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSA--ILASNTSSI  122 (295)
T ss_pred             H-HHhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCc--EEEECCCCC
Confidence            4 6789999999995              223344556666677665 444  345777664

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.58  E-value=4.7e-07  Score=77.87  Aligned_cols=102  Identities=23%  Similarity=0.327  Sum_probs=65.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-H--------HhhcCCCC---------CcceeEeecCCc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-A--------ADVGHINT---------RSEVAGYMGNDQ   89 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-~--------~dl~~~~~---------~~~v~~~~~~~d   89 (209)
                      +|||+|+|+ |.+|.+++..|++.|+  +|+++|+++.... .        ..+.....         ..++..   +.+
T Consensus         2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~   75 (308)
T PRK06129          2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDS   75 (308)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECc
Confidence            468999998 9999999999999999  9999999752111 0        01211111         012222   357


Q ss_pred             hhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 028437           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (209)
Q Consensus        90 ~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~  150 (209)
                      +.+++++||+|+.+..              .+....+.+.+.+.+..++..+ +.||....
T Consensus        76 ~~~a~~~ad~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~i-i~ssts~~  121 (308)
T PRK06129         76 LADAVADADYVQESAP--------------ENLELKRALFAELDALAPPHAI-LASSTSAL  121 (308)
T ss_pred             HHHhhCCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCcce-EEEeCCCC
Confidence            7788999999999852              1223344555666666654433 35666553

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.57  E-value=3e-07  Score=78.30  Aligned_cols=101  Identities=20%  Similarity=0.241  Sum_probs=63.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-----HHhhc-----CCCC--------CcceeEeecCCch
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVG-----HINT--------RSEVAGYMGNDQL   90 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-----~~dl~-----~~~~--------~~~v~~~~~~~d~   90 (209)
                      .||+|+|+ |.+|..++..|++.|+  +|+++|+++....     ..++.     ....        ...+..   ++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~   75 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL   75 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence            48999999 9999999999999999  9999999852110     00000     0000        011222   3467


Q ss_pred             hhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 028437           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (209)
Q Consensus        91 ~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~  150 (209)
                      ++++++||+||.+..              .+....+.++..+.++++... ++++|.+..
T Consensus        76 ~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~-il~~~tSt~  120 (288)
T PRK09260         76 KAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAEC-YIATNTSTM  120 (288)
T ss_pred             HHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCc-EEEEcCCCC
Confidence            789999999999952              123344555566766664332 245565553

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.56  E-value=7.8e-07  Score=81.39  Aligned_cols=104  Identities=14%  Similarity=0.104  Sum_probs=68.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-HHh--------hc---CCCC--CcceeEeecCCchhh
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AAD--------VG---HINT--RSEVAGYMGNDQLGQ   92 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-~~d--------l~---~~~~--~~~v~~~~~~~d~~~   92 (209)
                      +.|||+|+|+ |.+|+.++..|+..|+  +|+++|+++.... ..+        +.   ....  ...+..   ++++++
T Consensus         3 ~i~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~e   76 (495)
T PRK07531          3 MIMKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAE   76 (495)
T ss_pred             CcCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHH
Confidence            4469999999 9999999999999999  9999999752211 000        00   1000  011222   356778


Q ss_pred             hcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCc
Q 028437           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST  151 (209)
Q Consensus        93 a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~  151 (209)
                      ++++||+|+.++.              ++.+..+.+...+.+.+++. .++.||.++..
T Consensus        77 a~~~aD~Vieavp--------------e~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~  120 (495)
T PRK07531         77 AVAGADWIQESVP--------------ERLDLKRRVLAEIDAAARPD-ALIGSSTSGFL  120 (495)
T ss_pred             HhcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCC
Confidence            9999999999841              22344556666677776544 34678777753

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.53  E-value=1.9e-06  Score=70.53  Aligned_cols=100  Identities=23%  Similarity=0.221  Sum_probs=62.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcC----CCCCcceeEeecCCchhhhcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGH----INTRSEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~----~~~~~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      |||+|+|++|.+|+.++..|.+.|+  +|.++++++...  ...+..+    ......+..    .+.+++++++|+||+
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~----~~~~ea~~~aDvVil   74 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG----ADNAEAAKRADVVIL   74 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE----eChHHHHhcCCEEEE
Confidence            6899998559999999999999998  999999875221  1111111    111111111    134678899999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~  150 (209)
                      ++..                ....++++.+....++..+|-++||...
T Consensus        75 avp~----------------~~~~~~l~~l~~~l~~~vvI~~~ngi~~  106 (219)
T TIGR01915        75 AVPW----------------DHVLKTLESLRDELSGKLVISPVVPLAS  106 (219)
T ss_pred             ECCH----------------HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence            9631                1123333444333334567788898763

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=98.53  E-value=1.1e-06  Score=73.87  Aligned_cols=96  Identities=20%  Similarity=0.223  Sum_probs=66.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC-CCCEEEEcCCCCCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPAGVPRK  109 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~-~aD~Vi~~ag~~~~  109 (209)
                      |+|+|+||+||++|+..|.+.||  +|+++-|++.+...  ..+.... ..      +.+++... ++|+||+.||.+-.
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~--~~~~~v~-~~------~~~~~~~~~~~DavINLAG~~I~   69 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQ--NLHPNVT-LW------EGLADALTLGIDAVINLAGEPIA   69 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhh--hcCcccc-cc------chhhhcccCCCCEEEECCCCccc
Confidence            68999999999999999999999  99999997632221  1111100 11      12233333 79999999998742


Q ss_pred             CC----CChhHHHHHHHHHHHHHHHHHHhhCC
Q 028437          110 PG----MTRDDLFNINAGIVKDLCSAIAKYCP  137 (209)
Q Consensus       110 ~g----~~r~~~~~~N~~~~~~i~~~i~~~~p  137 (209)
                      ..    .......+.-+..++.+++.+.+...
T Consensus        70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~  101 (297)
T COG1090          70 ERRWTEKQKEEIRQSRINTTEKLVELIAASET  101 (297)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHhccC
Confidence            22    12445566678899999999997653

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.51  E-value=1.3e-06  Score=75.01  Aligned_cols=104  Identities=19%  Similarity=0.313  Sum_probs=64.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH--HHh----hc---CCCC----CcceeEeecCCchhh
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AAD----VG---HINT----RSEVAGYMGNDQLGQ   92 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~--~~d----l~---~~~~----~~~v~~~~~~~d~~~   92 (209)
                      .+.+||+|+|+ |.+|..++..|+..|+  +|+++|+++....  ...    +.   ....    ...+..   ++++++
T Consensus         2 ~~~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~   75 (311)
T PRK06130          2 NPIQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM---EAGLAA   75 (311)
T ss_pred             CCccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE---eCCHHH
Confidence            34579999999 9999999999999999  9999999752110  000    00   0000    001222   346677


Q ss_pred             hcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 028437           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (209)
Q Consensus        93 a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~  150 (209)
                      ++++||+||.+...              .......+.+.+....+.. .+++||.++.
T Consensus        76 ~~~~aDlVi~av~~--------------~~~~~~~v~~~l~~~~~~~-~ii~s~tsg~  118 (311)
T PRK06130         76 AVSGADLVIEAVPE--------------KLELKRDVFARLDGLCDPD-TIFATNTSGL  118 (311)
T ss_pred             HhccCCEEEEeccC--------------cHHHHHHHHHHHHHhCCCC-cEEEECCCCC
Confidence            89999999999521              1233455556666655433 2345666664

>PRK12829 short chain dehydrogenase; Provisional

Probab=98.50  E-value=2.7e-06  Score=70.40  Aligned_cols=124  Identities=19%  Similarity=0.236  Sum_probs=70.3

Q ss_pred             ccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEeecCCchhhh---
Q 028437           19 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQA---   93 (209)
Q Consensus        19 ~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a---   93 (209)
                      |+++.++ +.++++|+||+|++|+.++..|+++|+  +|+++++++...  ...++.........-++...+++.++   
T Consensus         3 ~~~~~~~-~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   79 (264)
T PRK12829          3 IDLLKPL-DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDT   79 (264)
T ss_pred             hhHhhcc-CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHH
Confidence            3444443 336999999999999999999999999  999999974211  11112111000000001111122222   


Q ss_pred             ----cCCCCEEEEcCCCCCCCC----CC---hhHHHHHHHHHHHHHHHHHHhh---CCC-eEEEEec
Q 028437           94 ----LEDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKY---CPN-AIVNMIS  145 (209)
Q Consensus        94 ----~~~aD~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~~~i~~~i~~~---~p~-~~viv~s  145 (209)
                          +.++|+||+++|.....+    .+   ..+.+..|......+.+.+.+.   ... .++++.|
T Consensus        80 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~s  146 (264)
T PRK12829         80 AVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALS  146 (264)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence                347899999998752221    11   2344667777766666665332   222 4566555

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=98.48  E-value=8.2e-07  Score=73.44  Aligned_cols=114  Identities=19%  Similarity=0.288  Sum_probs=69.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee----cCCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM----GNDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------~   95 (209)
                      ++++|+||+|++|++++..|++.|+  +|+++++++.  .....++.+...  ++..+.    ...++++++       .
T Consensus         8 ~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~   83 (262)
T PRK13394          8 KTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAGG--KAIGVAMDVTNEDAVNAGIDKVAERFG   83 (262)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcCc--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999999999  9999999752  122223332211  111111    111222222       3


Q ss_pred             CCCEEEEcCCCCCCC---CC---ChhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKP---GM---TRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~---~r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +.|+||+++|.....   ..   ...+.+..|+..    ++.+.+.+.+..+...++++|.
T Consensus        84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss  144 (262)
T PRK13394         84 SVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGS  144 (262)
T ss_pred             CCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcc
Confidence            589999999874311   11   123445567766    6677777733344556777653

>PRK06180 short chain dehydrogenase; Provisional

Probab=98.46  E-value=2.6e-06  Score=71.65  Aligned_cols=114  Identities=15%  Similarity=0.126  Sum_probs=69.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeE----eecCCchhhhc-------CC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG----YMGNDQLGQAL-------ED   96 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~----~~~~~d~~~a~-------~~   96 (209)
                      +++|+|+||+|++|++++..|++.|+  +|+++++++...  .++..... ..+..    +...+++.+++       ..
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~--~~l~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAAR--ADFEALHP-DRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHH--HHHHhhcC-CCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            45799999999999999999999999  999999974221  12221110 01111    11111222222       35


Q ss_pred             CCEEEEcCCCCCC---CCCCh---hHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRK---PGMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~---~g~~r---~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      .|+||+++|....   ...+.   .+.+..|+....++.+.+.++   .....+|++|.
T Consensus        79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS  137 (277)
T PRK06180         79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITS  137 (277)
T ss_pred             CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence            8999999987431   11222   344778888887777775442   23346777764

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=98.46  E-value=1.8e-06  Score=73.25  Aligned_cols=117  Identities=21%  Similarity=0.134  Sum_probs=78.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh---HHHhhcCCCCCcceeE-eecCCchhhhcC--CCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAG-YMGNDQLGQALE--DSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~---~~~dl~~~~~~~~v~~-~~~~~d~~~a~~--~aD~Vi~  102 (209)
                      |+|+|+|++||||++.+..++.+..-.+|+.+|.---.+   ...++.+.+....++. +.+...+.+.++  +.|.|++
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            589999999999999999888876544688888742112   2234444332222222 111223445566  6899999


Q ss_pred             cCCCCCC--CCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          103 PAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       103 ~ag~~~~--~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      .|+-...  .=....+|++.|+-.+..++++++++...-+++.+|
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HIS  125 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHIS  125 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEec
Confidence            9865421  113467899999999999999999998654565554

>PLN02996 fatty acyl-CoA reductase

Probab=98.46  E-value=3.7e-06  Score=76.92  Aligned_cols=116  Identities=16%  Similarity=0.105  Sum_probs=73.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEecCCc--hh--H-HHhhcCCC------------C----CcceeEeec
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANT--PG--V-AADVGHIN------------T----RSEVAGYMG   86 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g-~~~ev~l~D~~~~--~~--~-~~dl~~~~------------~----~~~v~~~~~   86 (209)
                      ++|.|||||||+|++++..|+..+ -+.+|+++.|...  ..  . ..++...+            .    ..++..+.+
T Consensus        12 k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i~G   91 (491)
T PLN02996         12 KTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPVPG   91 (491)
T ss_pred             CeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEEec
Confidence            489999999999999999988754 3568888888531  00  0 01111100            0    012222221


Q ss_pred             C----------Cc-hhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           87 N----------DQ-LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        87 ~----------~d-~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      .          .+ +++.++++|+|||+|+.... ..+..+....|+..+.++++.+++...-.+++.+|
T Consensus        92 Dl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vS  160 (491)
T PLN02996         92 DISYDDLGVKDSNLREEMWKEIDIVVNLAATTNF-DERYDVALGINTLGALNVLNFAKKCVKVKMLLHVS  160 (491)
T ss_pred             ccCCcCCCCChHHHHHHHHhCCCEEEECccccCC-cCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence            1          11 34567899999999986542 33456678899999999999998753222455554

>PRK08267 short chain dehydrogenase; Provisional

Probab=98.45  E-value=1.5e-06  Score=72.16  Aligned_cols=117  Identities=29%  Similarity=0.357  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEeecCCchhhhc--------CCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQAL--------EDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~--------~~aD   98 (209)
                      ++++|+||+|++|..++..|+++|.  +|+++++++...  ...++.........-++....++++++        ...|
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id   79 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLD   79 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence            4799999999999999999999998  999999875211  111222111100000011111223332        3569


Q ss_pred             EEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           99 VVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        99 ~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      +||+++|......   .+   ..+.+..|+.....+.+.+.++   .+...++++|..
T Consensus        80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~  137 (260)
T PRK08267         80 VLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSA  137 (260)
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence            9999998753211   11   3345777888777776665432   344566666544

>PRK06482 short chain dehydrogenase; Provisional

Probab=98.44  E-value=5.4e-06  Score=69.41  Aligned_cols=113  Identities=14%  Similarity=0.048  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee----cCCchhhh-------cCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQA-------LEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~a-------~~~a   97 (209)
                      ++++|+||+|++|++++..|++.|+  +|.++++++..  ..++.... ...+..+.    ..++++++       +.+.
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDA--LDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI   77 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999998  99999986421  11111110 00111111    11112222       3468


Q ss_pred             CEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           98 DVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        98 D~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      |+||+++|......   .+   ....+..|+.....+++.+.++   ....+++++|.
T Consensus        78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS  135 (276)
T PRK06482         78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSS  135 (276)
T ss_pred             CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence            99999998754221   11   2345678888888888887432   23356777764

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=98.44  E-value=1.5e-06  Score=72.10  Aligned_cols=112  Identities=18%  Similarity=0.156  Sum_probs=68.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee--Eeec-CCchhhhc-CCCCEEEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA--GYMG-NDQLGQAL-EDSDVVII  102 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~--~~~~-~~d~~~a~-~~aD~Vi~  102 (209)
                      .+|||+|+||+|++|+.++..|++.|+  +|+++.+++..... .+.... ...+.  ++.. ..++.+++ .++|+||+
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~-~~~~~~-~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~   91 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKT-SLPQDP-SLQIVRADVTEGSDKLVEAIGDDSDAVIC   91 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHH-hcccCC-ceEEEEeeCCCCHHHHHHHhhcCCCEEEE
Confidence            347999999999999999999999998  99988876422111 111110 01111  1111 12345666 68999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ++|.....+  ..+....|.....++++.+.+... .+++++|
T Consensus        92 ~~g~~~~~~--~~~~~~~n~~~~~~ll~a~~~~~~-~~iV~iS  131 (251)
T PLN00141         92 ATGFRRSFD--PFAPWKVDNFGTVNLVEACRKAGV-TRFILVS  131 (251)
T ss_pred             CCCCCcCCC--CCCceeeehHHHHHHHHHHHHcCC-CEEEEEc
Confidence            987643211  111234566677888888876543 3566654

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=98.44  E-value=2e-07  Score=79.34  Aligned_cols=96  Identities=24%  Similarity=0.291  Sum_probs=62.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC--CCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aD~Vi~~ag~  106 (209)
                      |||+|+||+|++|+++...|.+.|+  +++.+++..     .|+.+..            .+.+.++  ..|+||++|+.
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~------------~~~~~~~~~~pd~Vin~aa~   61 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE------------AVAKLLEAFKPDVVINCAAY   61 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH------------HHHHHHHHH--SEEEE----
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH------------HHHHHHHHhCCCeEecccee
Confidence            7999999999999999999999998  888887641     2222221            1222222  47999999987


Q ss_pred             CCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          107 PRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       107 ~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      .....  .++.+....|+....++++.+.+.  +.++|.+|
T Consensus        62 ~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~--~~~li~~S  100 (286)
T PF04321_consen   62 TNVDACEKNPEEAYAINVDATKNLAEACKER--GARLIHIS  100 (286)
T ss_dssp             --HHHHHHSHHHHHHHHTHHHHHHHHHHHHC--T-EEEEEE
T ss_pred             ecHHhhhhChhhhHHHhhHHHHHHHHHHHHc--CCcEEEee
Confidence            53111  245567789999999999999875  35666665

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.41  E-value=6.1e-06  Score=73.77  Aligned_cols=118  Identities=25%  Similarity=0.307  Sum_probs=70.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC----------------CcceeEeecCCchhh
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLGQ   92 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~----------------~~~v~~~~~~~d~~~   92 (209)
                      |||+|+|. |.+|..++..|++.|+  +|+++|+++..  ..++.....                ..++..   ++++.+
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~   72 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEK--VDKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED   72 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHH--HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence            58999999 9999999999999999  99999997532  222222110                011222   346677


Q ss_pred             hcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEec-CCCCCcHHHHHHHHH
Q 028437           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS-NPVNSTVPIAAEVFK  160 (209)
Q Consensus        93 a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~s-nP~~~~~~i~~~~~~  160 (209)
                      ++++||+||++.+.+.....      .-+...+.+.++.+.+.. +...++..| -|.++.-.+...++.
T Consensus        73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~  136 (411)
T TIGR03026        73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILE  136 (411)
T ss_pred             HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHH
Confidence            89999999999887653321      112334445555555443 444444443 444443333333433

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK07806 short chain dehydrogenase; Provisional

Probab=98.39  E-value=2.2e-06  Score=70.44  Aligned_cols=114  Identities=16%  Similarity=0.258  Sum_probs=70.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch---hHHHhhcCCCCCcceeE----eecCCchhhhc-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAG----YMGNDQLGQAL-------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~---~~~~dl~~~~~~~~v~~----~~~~~d~~~a~-------   94 (209)
                      ++++|+||+|++|.+++..|++.|+  +|++++++...   ....++.....  .+..    +...+++++++       
T Consensus         7 k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (248)
T PRK07806          7 KTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAGG--RASAVGADLTDEESVAALMDTAREEF   82 (248)
T ss_pred             cEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            5899999999999999999999998  99998885321   11122322110  1111    11111222222       


Q ss_pred             CCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      .+.|+||+++|.......+..+.+..|+....++++.+.++. ..++++++|.
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence            368999999876432222233455678888888888887764 3456777754

>PLN02253 xanthoxin dehydrogenase

Probab=98.39  E-value=1.4e-05  Score=67.11  Aligned_cols=114  Identities=18%  Similarity=0.294  Sum_probs=69.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeE----eecCCchhhhcC------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAG----YMGNDQLGQALE------   95 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~----~~~~~d~~~a~~------   95 (209)
                      .++++|+||+|.+|.+++..|++.|.  +|+++|+++..  ....++...   .++..    +...++++++++      
T Consensus        18 ~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~~~   92 (280)
T PLN02253         18 GKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGGE---PNVCFFHCDVTVEDDVSRAVDFTVDKF   92 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcCC---CceEEEEeecCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999998  99999986421  112223211   11111    111122333333      


Q ss_pred             -CCCEEEEcCCCCCCC-----CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           96 -DSDVVIIPAGVPRKP-----GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        96 -~aD~Vi~~ag~~~~~-----g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                       ..|++|++||.....     ..+   ....+..|+.....+++.+.+.   ...+.+++++.
T Consensus        93 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS  155 (280)
T PLN02253         93 GTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCS  155 (280)
T ss_pred             CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecC
Confidence             689999999875321     112   2345777877766666655433   23456677664

>PRK06179 short chain dehydrogenase; Provisional

Probab=98.38  E-value=3.5e-06  Score=70.27  Aligned_cols=113  Identities=18%  Similarity=0.176  Sum_probs=67.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCC-CCcceeEeecCCchhhhcC-------CCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-TRSEVAGYMGNDQLGQALE-------DSD   98 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~-~~~~v~~~~~~~d~~~a~~-------~aD   98 (209)
                      +.++|+|+||+|++|++++..|+++|.  +|++.++++....  ...... ...+   +...++++++++       ..|
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~D---~~d~~~~~~~~~~~~~~~g~~d   75 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARAA--PIPGVELLELD---VTDDASVQAAVDEVIARAGRID   75 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhcc--ccCCCeeEEee---cCCHHHHHHHHHHHHHhCCCCC
Confidence            345899999999999999999999998  9999999742111  111110 0011   111223334443       469


Q ss_pred             EEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCC
Q 028437           99 VVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (209)
Q Consensus        99 ~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~snP  147 (209)
                      ++|+++|......   .+   ....+..|......+.+.+    ++.. .++++++|..
T Consensus        76 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~isS~  133 (270)
T PRK06179         76 VLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG-SGRIINISSV  133 (270)
T ss_pred             EEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEECCc
Confidence            9999998754221   11   2345667776666555554    4333 3567776653

>PRK05993 short chain dehydrogenase; Provisional

Probab=98.38  E-value=3.2e-06  Score=71.09  Aligned_cols=114  Identities=12%  Similarity=0.102  Sum_probs=67.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhc--------CCCCE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL--------EDSDV   99 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~--------~~aD~   99 (209)
                      +++|+|+||+|.+|.+++..|++.|.  +|++.++++..  ..++.........-++...+++++++        ...|+
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~--~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~   79 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGW--RVFATCRKEED--VAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDA   79 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccE
Confidence            35799999999999999999999998  99999997421  11222211110000111111222222        24699


Q ss_pred             EEEcCCCCCCCC---CC---hhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 028437          100 VIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       100 Vi~~ag~~~~~g---~~---r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +|++||......   .+   ..+.+..|+..    ++.+++.+++.. .++++++|.
T Consensus        80 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS  135 (277)
T PRK05993         80 LFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSS  135 (277)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECC
Confidence            999998653211   12   23456677766    566667666543 346777754

>PRK06182 short chain dehydrogenase; Validated

Probab=98.37  E-value=4.3e-06  Score=69.97  Aligned_cols=114  Identities=15%  Similarity=0.120  Sum_probs=67.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC-------CCCEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-------DSDVV  100 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~-------~aD~V  100 (209)
                      .++|+|+||+|.+|.+++..|++.|+  +|++.++++..  ..++.........-++...++++++++       +.|++
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~--l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~l   78 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDK--MEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVL   78 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            35899999999999999999999999  99999987421  112221111100011111123333333       78999


Q ss_pred             EEcCCCCCCC---CC---ChhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 028437          101 IIPAGVPRKP---GM---TRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       101 i~~ag~~~~~---g~---~r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |+++|.....   ..   +....+..|+..    ++.+++.+++.. .++++++|.
T Consensus        79 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS  133 (273)
T PRK06182         79 VNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQR-SGRIINISS  133 (273)
T ss_pred             EECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcc
Confidence            9999875321   11   123445667654    556666666543 346666654

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=98.37  E-value=2.9e-06  Score=72.10  Aligned_cols=110  Identities=19%  Similarity=0.106  Sum_probs=70.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-h-HHHhhcCCCCCcceeEe----ecCCchhhhcC--CCCEEE
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-G-VAADVGHINTRSEVAGY----MGNDQLGQALE--DSDVVI  101 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~-~~~dl~~~~~~~~v~~~----~~~~d~~~a~~--~aD~Vi  101 (209)
                      ||+|+||+|++|..++..|++.|+  +|+++|+.... . ....+....   .+..+    ....+++++++  +.|+||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~d~vv   75 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERIT---RVTFVEGDLRDRELLDRLFEEHKIDAVI   75 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhcccc---ceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence            689999999999999999999998  89988764211 1 111111110   11111    11123445554  689999


Q ss_pred             EcCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          102 IPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       102 ~~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +++|......  .+..+.+..|+....++++.+.+.... .++++|
T Consensus        76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~s  120 (328)
T TIGR01179        76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVK-KFIFSS  120 (328)
T ss_pred             ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCC-EEEEec
Confidence            9998653221  234456788999999999998876533 455554

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.35  E-value=2.8e-06  Score=80.27  Aligned_cols=94  Identities=17%  Similarity=0.168  Sum_probs=64.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC--CCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aD~Vi~~a  104 (209)
                      +.|||+|+||+||+|++|+..|...|+  ++... .       .++.+..            .+...++  +.|+|||+|
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~-------~~l~d~~------------~v~~~i~~~~pd~Vih~A  436 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-K-------GRLEDRS------------SLLADIRNVKPTHVFNAA  436 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCC--eEEee-c-------cccccHH------------HHHHHHHhhCCCEEEECC
Confidence            347999999999999999999999887  76321 1       0111110            1122222  689999999


Q ss_pred             CCCCCCC-----CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 028437          105 GVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (209)
Q Consensus       105 g~~~~~g-----~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~  144 (209)
                      +....+.     .+..+.+..|+..+.++++.+++.+.  +++++
T Consensus       437 a~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~--~~v~~  479 (668)
T PLN02260        437 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL--LMMNF  479 (668)
T ss_pred             cccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC--eEEEE
Confidence            8653221     24567788999999999999998754  34444

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=98.34  E-value=1.5e-06  Score=73.64  Aligned_cols=95  Identities=13%  Similarity=0.099  Sum_probs=64.9

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC--CCCEEEEcCCCCCC
Q 028437           32 AVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGVPRK  109 (209)
Q Consensus        32 ~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aD~Vi~~ag~~~~  109 (209)
                      +|+||+||+|++|+..|+..|+  +++++....    ..|+.+.            .++++.++  +.|+|||+|+....
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~~------------~~l~~~~~~~~~d~Vih~A~~~~~   62 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTRQ------------ADVEAFFAKEKPTYVILAAAKVGG   62 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCCH------------HHHHHHHhccCCCEEEEeeeeecc
Confidence            4899999999999999999998  666554321    1122221            23444444  57999999976421


Q ss_pred             ---CCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          110 ---PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       110 ---~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                         ...+..+++..|...+.++++.+++.... ++|++|
T Consensus        63 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~S  100 (306)
T PLN02725         63 IHANMTYPADFIRENLQIQTNVIDAAYRHGVK-KLLFLG  100 (306)
T ss_pred             cchhhhCcHHHHHHHhHHHHHHHHHHHHcCCC-eEEEeC
Confidence               12345567889999999999999986533 455554

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=98.33  E-value=3.8e-06  Score=68.43  Aligned_cols=115  Identities=20%  Similarity=0.296  Sum_probs=68.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeE----eecCCchhhh-------c
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAG----YMGNDQLGQA-------L   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~----~~~~~d~~~a-------~   94 (209)
                      +++|+|+||+|++|..++..|+++|+  +|.++++++...  ...++.....  .+..    +....++.++       +
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEEAAEALAAELRAAGG--EARVLVFDVSDEAAVRALIEAAVEAF   80 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            36899999999999999999999999  899999975321  1222221111  1111    1111122222       3


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ...|.||+++|.....   ..+   ..+.+..|+.....+.+.+.++   ....+++++|.
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss  141 (246)
T PRK05653         81 GALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISS  141 (246)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence            4569999998764221   112   2334667777777777666432   23346776663

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=98.33  E-value=3.2e-06  Score=71.71  Aligned_cols=95  Identities=24%  Similarity=0.275  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCC--CCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED--SDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~--aD~Vi~~ag~  106 (209)
                      |||+|+|++|++|+.|+..|. .+.  +|+..++..     .|+.+.+            .+.+.++.  -|+||++|+.
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy   60 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY   60 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence            579999999999999999887 556  888887743     3444332            23455554  4999999987


Q ss_pred             CCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          107 PRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       107 ~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      .....  .+++.-+..|.....++++++++.+  +++|.+|
T Consensus        61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhiS   99 (281)
T COG1091          61 TAVDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHIS   99 (281)
T ss_pred             cccccccCCHHHHHHhHHHHHHHHHHHHHHhC--CeEEEee
Confidence            65332  3455667899999999999999864  3455554

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=98.33  E-value=6.1e-06  Score=69.49  Aligned_cols=121  Identities=16%  Similarity=0.184  Sum_probs=74.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCC-CCcceeE--eecCCchhh-------h
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN-TRSEVAG--YMGNDQLGQ-------A   93 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~-~~~~v~~--~~~~~d~~~-------a   93 (209)
                      .+++.++|||||+.||..++..|+.+|+  +|+|+.|++  +.....++.+.. ..+.+..  +..+++++.       .
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~   81 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER   81 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence            3456899999999999999999999999  999999975  233344455432 1111111  111222222       1


Q ss_pred             cCCCCEEEEcCCCCCCCC------CChhHHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCCCC
Q 028437           94 LEDSDVVIIPAGVPRKPG------MTRDDLFNINAGIVK----DLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus        94 ~~~aD~Vi~~ag~~~~~g------~~r~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      ....|+.|+.||......      .+..+++.-|+....    .+++.|.+. ..+.||+++.-++
T Consensus        82 ~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~-~~G~IiNI~S~ag  146 (265)
T COG0300          82 GGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVER-GAGHIINIGSAAG  146 (265)
T ss_pred             CCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEechhh
Confidence            236899999999864221      234567777865444    455555543 3456777764433

>PRK12828 short chain dehydrogenase; Provisional

Probab=98.32  E-value=5.4e-06  Score=67.31  Aligned_cols=117  Identities=18%  Similarity=0.172  Sum_probs=68.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEeecCCchhhh-------cCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQA-------LEDSD   98 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~a-------~~~aD   98 (209)
                      .++|+|+||+|++|+.++..|+++|+  +|+++++++.+  ....++.........-++...++++++       +.++|
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLD   84 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcC
Confidence            35899999999999999999999998  99999997522  112222221111000011111222222       33689


Q ss_pred             EEEEcCCCCCCCC---CCh---hHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           99 VVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        99 ~Vi~~ag~~~~~g---~~r---~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      +||+++|......   .+.   .+.+..|......+++.+.+.   .+..+++++|.
T Consensus        85 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  141 (239)
T PRK12828         85 ALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA  141 (239)
T ss_pred             EEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence            9999988642111   122   233556777666766665432   34456777664

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=98.32  E-value=1.6e-05  Score=65.74  Aligned_cols=114  Identities=20%  Similarity=0.262  Sum_probs=69.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCccee-EeecCCchhhh-------cCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVA-GYMGNDQLGQA-------LEDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~aD   98 (209)
                      ++++|+||+|++|.+++..|+++|+  +|+++|++....  ...++.... . .+. ++...++.+++       +...|
T Consensus         7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~-~-~~~~D~~~~~~~~~~~~~~~~~~~~id   82 (257)
T PRK07067          7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGPAA-I-AVSLDVTRQDSIDRIVAAAVERFGGID   82 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCCce-E-EEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4799999999999999999999999  999999975321  112222110 0 000 01111122232       34689


Q ss_pred             EEEEcCCCCCCC---CC---ChhHHHHHHHHHHHHHHHHHHhh----CCCeEEEEecC
Q 028437           99 VVIIPAGVPRKP---GM---TRDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN  146 (209)
Q Consensus        99 ~Vi~~ag~~~~~---g~---~r~~~~~~N~~~~~~i~~~i~~~----~p~~~viv~sn  146 (209)
                      ++|+++|.....   ..   +..+.+..|+.....+.+.+.++    ...+.++++|.
T Consensus        83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  140 (257)
T PRK07067         83 ILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMAS  140 (257)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            999999864211   11   23345678888777777776543    23456777765

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=98.32  E-value=1.6e-06  Score=71.09  Aligned_cols=94  Identities=18%  Similarity=0.170  Sum_probs=63.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCCCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKP  110 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~~~  110 (209)
                      |+|+||+|.+|++++..|++.++  +|.++-|+........+...........+...+++.++++|+|.||++.+... +
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~-~   77 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH-P   77 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC-C
T ss_pred             CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch-h
Confidence            79999999999999999999888  99999997643333344443321100011122457889999999999876432 1


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhhC
Q 028437          111 GMTRDDLFNINAGIVKDLCSAIAKYC  136 (209)
Q Consensus       111 g~~r~~~~~~N~~~~~~i~~~i~~~~  136 (209)
                               .-.+...++++++++.+
T Consensus        78 ---------~~~~~~~~li~Aa~~ag   94 (233)
T PF05368_consen   78 ---------SELEQQKNLIDAAKAAG   94 (233)
T ss_dssp             ---------CHHHHHHHHHHHHHHHT
T ss_pred             ---------hhhhhhhhHHHhhhccc
Confidence                     12345577888888876

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK07102 short chain dehydrogenase; Provisional

Probab=98.32  E-value=2.1e-05  Score=64.51  Aligned_cols=117  Identities=19%  Similarity=0.123  Sum_probs=70.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhc----CCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQAL----EDS   97 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~----~~a   97 (209)
                      |++|+|+||+|++|..++..|+++|+  +|+++++++..  ....++.... ..++..+.    ...++++.+    +..
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   77 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALP   77 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence            35899999999999999999999998  99999997521  1122222111 01121111    112233333    245


Q ss_pred             CEEEEcCCCCCCC---CCChh---HHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           98 DVVIIPAGVPRKP---GMTRD---DLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        98 D~Vi~~ag~~~~~---g~~r~---~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      |++|+++|.....   ..+.+   +.+..|+.....+.+.+.++   ...+.++++|..
T Consensus        78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  136 (243)
T PRK07102         78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV  136 (243)
T ss_pred             CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence            9999998864211   22222   34667887777777666553   234567777643

>PRK07326 short chain dehydrogenase; Provisional

Probab=98.32  E-value=4.6e-06  Score=67.98  Aligned_cols=114  Identities=19%  Similarity=0.173  Sum_probs=68.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEe----ecCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGY----MGNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~----~~~~d~~~a-------~~   95 (209)
                      ++|+|+||+|.+|+.++..|++.|.  +|+++++++...  ...++....   .+..+    ....++.+.       +.
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNKG---NVLGLAADVRDEADVQRAVDAIVAAFG   81 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhccC---cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999998  999999875221  122332211   11111    111122222       34


Q ss_pred             CCCEEEEcCCCCCCC---CCCh---hHHHHHHHHHHHHHHHHHHhh--CCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~r---~~~~~~N~~~~~~i~~~i~~~--~p~~~viv~snP  147 (209)
                      .+|+||+++|.....   ..+.   .+.+..|+.....+.+.+.+.  .....++++|..
T Consensus        82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~  141 (237)
T PRK07326         82 GLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL  141 (237)
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence            789999998864321   1122   234566776666666555433  234567777654

>TIGR01746 Thioester-redct thioester reductase domain

Probab=98.32  E-value=8.4e-06  Score=70.21  Aligned_cols=114  Identities=12%  Similarity=0.078  Sum_probs=72.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH----H-Hhhc-----CCCCC-cceeEeecC----------C
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV----A-ADVG-----HINTR-SEVAGYMGN----------D   88 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~----~-~dl~-----~~~~~-~~v~~~~~~----------~   88 (209)
                      +|+|+||+|++|++++..|++.|+..+|+++.+......    . ..+.     +.... ..+..+.+.          .
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            589999999999999999999985338999988642111    0 0011     00000 122222111          1


Q ss_pred             chhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        89 d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ++.+..+++|.||++|+.... ..+..++...|+..+.++++.+.+.... .++++|
T Consensus        81 ~~~~~~~~~d~vih~a~~~~~-~~~~~~~~~~nv~g~~~ll~~a~~~~~~-~~v~iS  135 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVNW-VYPYSELRAANVLGTREVLRLAASGRAK-PLHYVS  135 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEecc-CCcHHHHhhhhhHHHHHHHHHHhhCCCc-eEEEEc
Confidence            234556789999999886432 2334566778999999999998875443 355555

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.32  E-value=2.2e-06  Score=67.04  Aligned_cols=65  Identities=23%  Similarity=0.341  Sum_probs=47.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |+||+++|. |.+|+.++..|+..|+  +|+.||+++.  ...++.+..    ...   ..++++++++||+|+.+.
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~~--~~~~~~~~g----~~~---~~s~~e~~~~~dvvi~~v   65 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSPE--KAEALAEAG----AEV---ADSPAEAAEQADVVILCV   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSHH--HHHHHHHTT----EEE---ESSHHHHHHHBSEEEE-S
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccchh--hhhhhHHhh----hhh---hhhhhhHhhcccceEeec
Confidence            579999999 9999999999999999  9999999742  233334332    222   236788999999999984

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK12937 short chain dehydrogenase; Provisional

Probab=98.31  E-value=2e-05  Score=64.42  Aligned_cols=116  Identities=16%  Similarity=0.146  Sum_probs=69.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEee----cCCchhhhc-----
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM----GNDQLGQAL-----   94 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-----   94 (209)
                      +.++|+|+||+|.+|++++..|+++|+  +++++.++..   .....++.....  ++..+.    ..+++++++     
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~   79 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAGG--RAIAVQADVADAAAVTRLFDAAET   79 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999998  8888776431   111222222111  111111    111233333     


Q ss_pred             --CCCCEEEEcCCCCCCCC---C---ChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           95 --EDSDVVIIPAGVPRKPG---M---TRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        95 --~~aD~Vi~~ag~~~~~g---~---~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                        .+.|+||+++|......   .   +....+..|+.....+.+.+.+.. +..+++++|.
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss  140 (245)
T PRK12937         80 AFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST  140 (245)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence              36899999998743111   1   123346678777777776665542 4457777764

>PLN02503 fatty acyl-CoA reductase 2

Probab=98.31  E-value=8.2e-06  Score=76.22  Aligned_cols=118  Identities=19%  Similarity=0.120  Sum_probs=73.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCCch--h--HH-HhhcCC------------C----CCcceeEe
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTP--G--VA-ADVGHI------------N----TRSEVAGY   84 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~~~--~--~~-~dl~~~------------~----~~~~v~~~   84 (209)
                      +.++|.|||||||+|..|+..|++.+. +.+|+++.+....  +  .. .++.+.            .    ...++..+
T Consensus       118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v  197 (605)
T PLN02503        118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV  197 (605)
T ss_pred             cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence            346999999999999999999997654 5688998885311  0  00 111110            0    01122222


Q ss_pred             ec----C------CchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           85 MG----N------DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        85 ~~----~------~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      .+    .      .+.+...+++|+|||+|+... ...+..+....|+..+.++++.+.+......++.+|
T Consensus       198 ~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vS  267 (605)
T PLN02503        198 VGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVS  267 (605)
T ss_pred             EeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEcc
Confidence            11    1      123344568999999998653 234556678899999999999998753323455544

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=98.30  E-value=2.7e-06  Score=72.87  Aligned_cols=113  Identities=16%  Similarity=0.082  Sum_probs=74.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC-----chhHHHhhcCCCCCcceeE----eecCCchhhhcC--C
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGVAADVGHINTRSEVAG----YMGNDQLGQALE--D   96 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~-----~~~~~~dl~~~~~~~~v~~----~~~~~d~~~a~~--~   96 (209)
                      .++|+||||+|+||+|.+..|+.+|+  +|+++|+..     +-.....+.+...  .+..    +.+...+++.++  .
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~~~--~v~f~~~Dl~D~~~L~kvF~~~~   77 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGEGK--SVFFVEGDLNDAEALEKLFSEVK   77 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCCCC--ceEEEEeccCCHHHHHHHHhhcC
Confidence            35899999999999999999999999  999999842     1111223333211  1111    111123444443  4


Q ss_pred             CCEEEEcCCCCCCC-C-CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           97 SDVVIIPAGVPRKP-G-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        97 aD~Vi~~ag~~~~~-g-~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      -|-|+|.|+..... . +.+..+...|+-.+.++++.|++++ ...++..|
T Consensus        78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~-~~~~V~ss  127 (343)
T KOG1371|consen   78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN-VKALVFSS  127 (343)
T ss_pred             CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC-CceEEEec
Confidence            68999998764321 1 2456788999999999999999987 33444443

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=98.30  E-value=1.6e-05  Score=65.60  Aligned_cols=115  Identities=14%  Similarity=0.128  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH--HHhhcCCCCCcceeE-eecCCchhhh-------cCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAG-YMGNDQLGQA-------LEDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~--~~dl~~~~~~~~v~~-~~~~~d~~~a-------~~~aD   98 (209)
                      |+|+|+||+|++|..++..|++.|+  +|+++++++....  ..++.. ... .+.. +...++++++       +.++|
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~-~~~~Dl~~~~~i~~~~~~~~~~~~~id   76 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELGD-NLY-IAQLDVRNRAAIEEMLASLPAEWRNID   76 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcc-ceE-EEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            5899999999999999999999998  9999999752111  111111 100 0000 1011122222       34799


Q ss_pred             EEEEcCCCCC--CC--CCCh---hHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           99 VVIIPAGVPR--KP--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        99 ~Vi~~ag~~~--~~--g~~r---~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      .||+++|...  .+  ..+.   .+.+..|+.....+.+.+.++   .....++++|..
T Consensus        77 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~  135 (248)
T PRK10538         77 VLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGST  135 (248)
T ss_pred             EEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCc
Confidence            9999998642  11  1222   334666766644444444332   233567777654

>PRK12746 short chain dehydrogenase; Provisional

Probab=98.30  E-value=3e-05  Score=63.93  Aligned_cols=114  Identities=18%  Similarity=0.182  Sum_probs=67.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-ecCCc--hhHHHhhcCCCCCcceeE----eecCCchhhhcC------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANT--PGVAADVGHINTRSEVAG----YMGNDQLGQALE------   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~-D~~~~--~~~~~dl~~~~~~~~v~~----~~~~~d~~~a~~------   95 (209)
                      ++|+|+||+|++|++++..|+++|.  +|.+. .++..  .....++.....  .+..    +...+++.++++      
T Consensus         7 ~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~d~~~i~~~~~~~~~~~   82 (254)
T PRK12746          7 KVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNGG--KAFLIEADLNSIDGVKKLVEQLKNEL   82 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCC--cEEEEEcCcCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999999998  88775 44321  111122221110  1111    111112222222      


Q ss_pred             -------CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           96 -------DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        96 -------~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                             +.|++|+++|......   .+   ....+..|+.....+.+.+.++. ..+.++++|.
T Consensus        83 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS  147 (254)
T PRK12746         83 QIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS  147 (254)
T ss_pred             ccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence                   5899999998753211   11   13345678888888888877653 2346666654

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.30  E-value=2.2e-05  Score=64.22  Aligned_cols=116  Identities=18%  Similarity=0.238  Sum_probs=69.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------~   95 (209)
                      ++++|+|++|.+|..++..|++.|+  +|+++++++..  ....++....  ..+..+.    ...++++++       .
T Consensus         8 ~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (239)
T PRK07666          8 KNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELG   83 (239)
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999999998  99999997421  1122332211  1121111    111233333       3


Q ss_pred             CCCEEEEcCCCCCCCC---CCh---hHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCC
Q 028437           96 DSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~r---~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP~  148 (209)
                      ++|+||+++|......   .+.   .+.+..|+.....+.+.+.++   .....++++|...
T Consensus        84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~  145 (239)
T PRK07666         84 SIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTA  145 (239)
T ss_pred             CccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchh
Confidence            7899999998753211   122   344677777666666665543   2234666666543

>PRK07774 short chain dehydrogenase; Provisional

Probab=98.30  E-value=1.7e-05  Score=65.17  Aligned_cols=116  Identities=20%  Similarity=0.146  Sum_probs=69.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCc-ceeE-eecCCchhh-------hcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRS-EVAG-YMGNDQLGQ-------ALEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~-~v~~-~~~~~d~~~-------a~~~a   97 (209)
                      ++++|+||+|++|.+++..|++.|+  +|+++++++..  ....++.+..... .+.. +...+++++       .+...
T Consensus         7 k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   84 (250)
T PRK07774          7 KVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGI   84 (250)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            5899999999999999999999998  99999997421  1122222211000 0110 111111222       22468


Q ss_pred             CEEEEcCCCCCC----C--CCC---hhHHHHHHHHHHHHHHHHHHhhC---CCeEEEEecC
Q 028437           98 DVVIIPAGVPRK----P--GMT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMISN  146 (209)
Q Consensus        98 D~Vi~~ag~~~~----~--g~~---r~~~~~~N~~~~~~i~~~i~~~~---p~~~viv~sn  146 (209)
                      |+||+++|....    +  ..+   ..+.+..|+....++.+.+.++.   +.+.++++|.
T Consensus        85 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  145 (250)
T PRK07774         85 DYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSS  145 (250)
T ss_pred             CEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEec
Confidence            999999997421    1  112   22356678877777777766542   2456777764

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=98.30  E-value=7.3e-06  Score=67.76  Aligned_cols=115  Identities=18%  Similarity=0.199  Sum_probs=71.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEe----ecCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGY----MGNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~----~~~~d~~~a-------~~   95 (209)
                      ++|+|+||+|++|..++..|+++|+  +|++.++++.+  .....+.....  ++..+    ...++++++       +.
T Consensus        11 k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   86 (255)
T PRK07523         11 RRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQGL--SAHALAFDVTDHDAVRAAIDAFEAEIG   86 (255)
T ss_pred             CEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCc--eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            5899999999999999999999998  99999997521  11222322111  11111    111122222       34


Q ss_pred             CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhhC---CCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~~---p~~~viv~snP  147 (209)
                      ..|++|+++|.....   ..+   ..+.+..|+.....+.+.+.++.   ..++++++|..
T Consensus        87 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~  147 (255)
T PRK07523         87 PIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV  147 (255)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence            579999999875311   111   23456688877777777776542   34677777654

>PRK08219 short chain dehydrogenase; Provisional

Probab=98.29  E-value=5.6e-06  Score=66.87  Aligned_cols=112  Identities=19%  Similarity=0.176  Sum_probs=63.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC--CCCcceeEeecCCchhhhcC---CCCEEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--NTRSEVAGYMGNDQLGQALE---DSDVVII  102 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~--~~~~~v~~~~~~~d~~~a~~---~aD~Vi~  102 (209)
                      +++++|+||+|++|+.++..|+++ +  +|++++++....  .++.+.  ......-++...++++++++   +.|.||+
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   77 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAERL--DELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVH   77 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHHH--HHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence            458999999999999999999988 7  899999864221  111110  11000000111123444454   5899999


Q ss_pred             cCCCCCCCC---CC---hhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 028437          103 PAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       103 ~ag~~~~~g---~~---r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ++|......   .+   ....+..|+..    .+.+.+.+++.  ...++++|.
T Consensus        78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~v~~ss  129 (227)
T PRK08219         78 NAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA--HGHVVFINS  129 (227)
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCeEEEEcc
Confidence            998753211   11   22335566665    44444544433  345666653

>PRK08278 short chain dehydrogenase; Provisional

Probab=98.29  E-value=4.6e-05  Score=63.98  Aligned_cols=115  Identities=18%  Similarity=0.194  Sum_probs=69.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch---------hHHHhhcCCCCCcceeE----eecCCchhhhc-
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---------GVAADVGHINTRSEVAG----YMGNDQLGQAL-   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~---------~~~~dl~~~~~~~~v~~----~~~~~d~~~a~-   94 (209)
                      ++++|+||+|++|.+++..|+++|.  +|++++++...         ....++.....  ++..    +...+++++.+ 
T Consensus         7 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~D~~~~~~i~~~~~   82 (273)
T PRK08278          7 KTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG--QALPLVGDVRDEDQVAAAVA   82 (273)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHH
Confidence            5899999999999999999999998  99999986421         11122222111  1111    11112222333 


Q ss_pred             ------CCCCEEEEcCCCCCCC---CCCh---hHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           95 ------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        95 ------~~aD~Vi~~ag~~~~~---g~~r---~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                            ...|++|+++|.....   ..+.   ...+..|+.....+.+.+..+   ...+.++++|.+
T Consensus        83 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~  150 (273)
T PRK08278         83 KAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPP  150 (273)
T ss_pred             HHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence                  3679999999864311   1222   334567777777777666543   234567777644

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.29  E-value=1e-05  Score=69.54  Aligned_cols=98  Identities=19%  Similarity=0.361  Sum_probs=63.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC----C------CCcceeEeecCCchhhhcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----N------TRSEVAGYMGNDQLGQALEDS   97 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~----~------~~~~v~~~~~~~d~~~a~~~a   97 (209)
                      ||||+|+|+ |.+|..++..|++.|+  +|.++|+++....  .+...    .      .+.....   +.+.+++++++
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~   72 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAA--EINADRENPRYLPGIKLPDNLRA---TTDLAEALADA   72 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCC
Confidence            469999999 9999999999999999  9999999742211  11111    0      0011221   34666788999


Q ss_pred             CEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 028437           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (209)
Q Consensus        98 D~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~  149 (209)
                      |+||++...                ..+.++++.+.+.. ++..++..+|..+
T Consensus        73 D~vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~  109 (325)
T PRK00094         73 DLILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE  109 (325)
T ss_pred             CEEEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence            999999531                12344445555543 5666777776544

>PRK12367 short chain dehydrogenase; Provisional

Probab=98.29  E-value=1.6e-05  Score=66.21  Aligned_cols=103  Identities=15%  Similarity=0.208  Sum_probs=64.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhcCCCCEEEEcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      .++++|+||+|.+|.+++..|++.|.  +|+++++++........ +.. ...+. ++...++.++.+.+.|++|++||.
T Consensus        14 ~k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~~-~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~   89 (245)
T PRK12367         14 GKRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESND-ESP-NEWIKWECGKEESLDKQLASLDVLILNHGI   89 (245)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhhc-cCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCcc
Confidence            35899999999999999999999998  99999986521111111 111 00111 111122345567789999999987


Q ss_pred             CCCCCCC---hhHHHHHHHHHHHHHHHHHHh
Q 028437          107 PRKPGMT---RDDLFNINAGIVKDLCSAIAK  134 (209)
Q Consensus       107 ~~~~g~~---r~~~~~~N~~~~~~i~~~i~~  134 (209)
                      ......+   ..+.+..|+.....+++.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  120 (245)
T PRK12367         90 NPGGRQDPENINKALEINALSSWRLLELFED  120 (245)
T ss_pred             CCcCCCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4322222   334567788766666665443

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=98.29  E-value=9.1e-06  Score=66.53  Aligned_cols=115  Identities=21%  Similarity=0.246  Sum_probs=68.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee----cCCchhhhc-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM----GNDQLGQAL-------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------   94 (209)
                      .++|+|+||+|++|.+++..|+++|+  +|++++++..  .....++.....  .+..+.    ...++++.+       
T Consensus         6 ~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (251)
T PRK12826          6 GRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAGG--KARARQVDVRDRAALKAAVAAGVEDF   81 (251)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999998  9999999742  111222322111  111111    111233333       


Q ss_pred             CCCCEEEEcCCCCCC-C--CCCh---hHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~-~--g~~r---~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ..+|+||+++|.... +  ..+.   .+.+..|+.....+.+.+.++   ....+++++|.
T Consensus        82 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss  142 (251)
T PRK12826         82 GRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSS  142 (251)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEec
Confidence            368999999876532 1  1222   334667777766666665422   22346666653

>PRK07856 short chain dehydrogenase; Provisional

Probab=98.29  E-value=2.3e-05  Score=64.68  Aligned_cols=114  Identities=17%  Similarity=0.111  Sum_probs=68.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhc-------CCCCEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-------EDSDVV  100 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~-------~~aD~V  100 (209)
                      .++++|+||+|.+|.+++..|++.|.  +|+++++++..    ...........-++...+++++++       ...|+|
T Consensus         6 ~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   79 (252)
T PRK07856          6 GRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE----TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVL   79 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh----hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            35899999999999999999999998  99999996422    011100000000010111233333       356999


Q ss_pred             EEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh----CCCeEEEEecCC
Q 028437          101 IIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISNP  147 (209)
Q Consensus       101 i~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~----~p~~~viv~snP  147 (209)
                      |+++|......   .+   ....+..|+.....+.+.+.++    ...+.+|++|..
T Consensus        80 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~  136 (252)
T PRK07856         80 VNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSV  136 (252)
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Confidence            99998643111   11   2345677887777777666542    233577777653

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.28  E-value=5.6e-06  Score=67.91  Aligned_cols=114  Identities=18%  Similarity=0.247  Sum_probs=66.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhc-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQAL-------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------   94 (209)
                      .++|+|+||+|++|..++..|+++|+  +|+++++++..  ....++.+ .  ..+..+.    ...++.+++       
T Consensus         5 ~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (251)
T PRK07231          5 GKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEILA-G--GRAIAVAADVSDEADVEAAVAAALERF   79 (251)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-C--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999999  99999997521  11223322 1  0111111    111232232       


Q ss_pred             CCCCEEEEcCCCCCCCC----CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ...|.||+++|......    .+   ..+.+..|+.....+.+.+.++   .....++++|.
T Consensus        80 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  141 (251)
T PRK07231         80 GSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVAS  141 (251)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            35799999998642111    11   2345666766555555444432   23355666654

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=98.27  E-value=5e-06  Score=68.44  Aligned_cols=114  Identities=15%  Similarity=0.251  Sum_probs=66.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEe----ecCCchhhh-------c
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGY----MGNDQLGQA-------L   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~----~~~~d~~~a-------~   94 (209)
                      .++|+|+||+|++|.+++..|++.|+  +|+++++++..  ....++....  .++..+    ...++++++       +
T Consensus         4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (258)
T PRK12429          4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETF   79 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999999  99999997521  1222332111  011111    111122222       3


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      .+.|+||+++|......   .+   ..+.+..|+..    ++.+.+.+++.. ..+++++|.
T Consensus        80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~iss  140 (258)
T PRK12429         80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQG-GGRIINMAS  140 (258)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC-CeEEEEEcc
Confidence            46899999998643211   11   22344556665    555556665443 446666654

>PRK05717 oxidoreductase; Validated

Probab=98.27  E-value=1.1e-05  Score=66.81  Aligned_cols=113  Identities=21%  Similarity=0.283  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH--HHhhcCCC--CCcceeEeecCCchhhh-------cCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHIN--TRSEVAGYMGNDQLGQA-------LEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~--~~dl~~~~--~~~~v~~~~~~~d~~~a-------~~~a   97 (209)
                      ++++|+||+|++|++++..|++.|.  +|+++|+++....  ..++....  ...++.   ...+++++       +...
T Consensus        11 k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~---~~~~~~~~~~~~~~~~g~i   85 (255)
T PRK05717         11 RVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKVAKALGENAWFIAMDVA---DEAQVAAGVAEVLGQFGRL   85 (255)
T ss_pred             CEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHcCCceEEEEccCC---CHHHHHHHHHHHHHHhCCC
Confidence            4799999999999999999999998  9999998642211  11121110  001111   11112111       2357


Q ss_pred             CEEEEcCCCCCCCC-----CC---hhHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecC
Q 028437           98 DVVIIPAGVPRKPG-----MT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (209)
Q Consensus        98 D~Vi~~ag~~~~~g-----~~---r~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~sn  146 (209)
                      |++|+++|......     .+   ..+.+..|+.....+.+.+.++-  ..+.+|++|.
T Consensus        86 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS  144 (255)
T PRK05717         86 DALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLAS  144 (255)
T ss_pred             CEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcc
Confidence            99999998753211     12   23567788888888888886532  3456777654

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.27  E-value=9.9e-06  Score=65.70  Aligned_cols=93  Identities=23%  Similarity=0.329  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh---HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~---~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ||+|+|+|+ |.+|+.++..+...|+  ||.+-.++..+.   ....+...     +..    .+.++|.+++|+||.+.
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l~~~-----i~~----~~~~dA~~~aDVVvLAV   68 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAALGPL-----ITG----GSNEDAAALADVVVLAV   68 (211)
T ss_pred             CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhhccc-----ccc----CChHHHHhcCCEEEEec
Confidence            578999998 9999999999999999  999987754222   12222221     222    24578999999999985


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~  148 (209)
                      ..                +.+..++++++..-.+.++|=.+||.
T Consensus        69 P~----------------~a~~~v~~~l~~~~~~KIvID~tnp~   96 (211)
T COG2085          69 PF----------------EAIPDVLAELRDALGGKIVIDATNPI   96 (211)
T ss_pred             cH----------------HHHHhHHHHHHHHhCCeEEEecCCCc
Confidence            21                22344445555433466778889983

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.27  E-value=9.7e-06  Score=72.67  Aligned_cols=109  Identities=19%  Similarity=0.218  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCC---cce----------eEeecCCchhhhc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR---SEV----------AGYMGNDQLGQAL   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~---~~v----------~~~~~~~d~~~a~   94 (209)
                      +|||+|+|. |++|..++..|++.|+  +|+.+|+++....  .+.....+   ..+          .....+++    .
T Consensus         3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~--~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~----~   73 (415)
T PRK11064          3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVD--TINRGEIHIVEPDLDMVVKTAVEGGYLRATTT----P   73 (415)
T ss_pred             ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHCCCCCcCCCCHHHHHHHHhhcCceeeecc----c
Confidence            479999999 9999999999999999  9999999753211  22211100   000          00111112    3


Q ss_pred             CCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-cCCCCCc
Q 028437           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNST  151 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~-snP~~~~  151 (209)
                      ++||+||++...|.....      ..++..+.+.++.+.++. +...+|.- |.|.+++
T Consensus        74 ~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt  126 (415)
T PRK11064         74 EPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGAT  126 (415)
T ss_pred             ccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHH
Confidence            589999999887753321      122344455556666554 34444444 4466643

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.25  E-value=1.4e-05  Score=70.98  Aligned_cols=111  Identities=21%  Similarity=0.297  Sum_probs=64.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC------------CcceeEeecCCchhhhcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT------------RSEVAGYMGNDQLGQALED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~------------~~~v~~~~~~~d~~~a~~~   96 (209)
                      |||+|+|+ |++|..++..++. |+  +|+.+|+++.+  ...+.....            ....+ +..+.+.+++.++
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~k--v~~l~~g~~~~~e~~l~~~l~~~~~~-l~~t~~~~~~~~~   73 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSR--VAMLNDRISPIVDKEIQQFLQSDKIH-FNATLDKNEAYRD   73 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHH--HHHHHcCCCCCCCcCHHHHHHhCCCc-EEEecchhhhhcC
Confidence            58999999 9999999977764 88  99999998521  122222100            00111 2223455677899


Q ss_pred             CCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEe-cCCCCCc
Q 028437           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNST  151 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~-snP~~~~  151 (209)
                      ||+||++.+.+......     .-++..+.+.++.+.+..++..+++- |-|++++
T Consensus        74 ad~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt  124 (388)
T PRK15057         74 ADYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFT  124 (388)
T ss_pred             CCEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCchH
Confidence            99999997765311111     12334445555555543444444333 5666643

>PRK07069 short chain dehydrogenase; Validated

Probab=98.25  E-value=3e-05  Score=63.60  Aligned_cols=115  Identities=22%  Similarity=0.233  Sum_probs=68.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC-Cc--hhHHHhhcCCCCCcc---ee-EeecCCchh-------hhcC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NT--PGVAADVGHINTRSE---VA-GYMGNDQLG-------QALE   95 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~-~~--~~~~~dl~~~~~~~~---v~-~~~~~~d~~-------~a~~   95 (209)
                      ||+|+||+|++|.+++..|+++|.  +|++.+++ ..  .....++........   +. ++...++++       +.+.
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG   78 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            589999999999999999999998  99999986 32  111222222110000   11 111111222       2245


Q ss_pred             CCCEEEEcCCCCCCCC---CCh---hHHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~r---~~~~~~N~~----~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ..|+||+++|......   .+.   ...+..|+.    .++.+.+.+++.. ...++++|..
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~ss~  139 (251)
T PRK07069         79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ-PASIVNISSV  139 (251)
T ss_pred             CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEecCh
Confidence            6899999998653211   122   234566766    7778888887643 3566666643

>PRK08643 acetoin reductase; Validated

Probab=98.24  E-value=0.00014  Score=60.05  Aligned_cols=115  Identities=25%  Similarity=0.274  Sum_probs=66.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeE----eecCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAG----YMGNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~----~~~~~d~~~a-------~~   95 (209)
                      ++++|+||+|++|.+++..|++.|.  +|++++++...  ....++.....  .+..    +...++++++       +.
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDGG--KAIAVKADVSDRDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3789999999999999999999998  99999987421  11222322110  1111    1111112222       34


Q ss_pred             CCCEEEEcCCCCCC-CC--CC---hhHHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRK-PG--MT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~-~g--~~---r~~~~~~N~~~~~~i~~~----i~~~~p~~~viv~snP  147 (209)
                      +.|.+|+++|.... +-  .+   ....+..|+.....+++.    +.+..+.++++++|..
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~  140 (256)
T PRK08643         79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQ  140 (256)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence            68999999986432 11  11   123456677655444444    4333345677777653

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.24  E-value=1.5e-05  Score=68.99  Aligned_cols=71  Identities=23%  Similarity=0.290  Sum_probs=50.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC--------C--CCcceeEeecCCchhhhcC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--------N--TRSEVAGYMGNDQLGQALE   95 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~--------~--~~~~v~~~~~~~d~~~a~~   95 (209)
                      ..+|||+|+|+ |.+|..++..|+..|+  +|.++++++....  ++...        .  .+..+..   +++++++++
T Consensus         2 ~~~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~--~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~   73 (328)
T PRK14618          2 HHGMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAA--ALAAERENREYLPGVALPAELYP---TADPEEALA   73 (328)
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHhCcccccCCCCcCCCCeEE---eCCHHHHHc
Confidence            34679999999 9999999999999999  9999999743211  12111        1  0111222   346677889


Q ss_pred             CCCEEEEcC
Q 028437           96 DSDVVIIPA  104 (209)
Q Consensus        96 ~aD~Vi~~a  104 (209)
                      ++|+||++.
T Consensus        74 ~aD~Vi~~v   82 (328)
T PRK14618         74 GADFAVVAV   82 (328)
T ss_pred             CCCEEEEEC
Confidence            999999985

>PRK12827 short chain dehydrogenase; Provisional

Probab=98.23  E-value=5.1e-05  Score=62.00  Aligned_cols=116  Identities=19%  Similarity=0.295  Sum_probs=69.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhH----HHhhcCCCCCcceeEee----cCCchhhhc---
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGV----AADVGHINTRSEVAGYM----GNDQLGQAL---   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~----~~dl~~~~~~~~v~~~~----~~~d~~~a~---   94 (209)
                      .++|+|+||+|++|+.++..|+++|+  +|+++++...  ...    ..++....  ..+..+.    ...++++.+   
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~   81 (249)
T PRK12827          6 SRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAAG--GKALGLAFDVRDFAATRAALDAG   81 (249)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHH
Confidence            36899999999999999999999999  9999876421  111    11222111  1111111    111222222   


Q ss_pred             ----CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHh----hCCCeEEEEecCC
Q 028437           95 ----EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAK----YCPNAIVNMISNP  147 (209)
Q Consensus        95 ----~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~----~~p~~~viv~snP  147 (209)
                          .+.|.||+++|.....   ..+   ....+..|......+++.+.+    ......++++|..
T Consensus        82 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~  148 (249)
T PRK12827         82 VEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASV  148 (249)
T ss_pred             HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence                4689999999875421   112   233567788888888888761    2233466666654

>PRK12939 short chain dehydrogenase; Provisional

Probab=98.23  E-value=1.9e-05  Score=64.62  Aligned_cols=114  Identities=17%  Similarity=0.169  Sum_probs=69.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee----cCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM----GNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~----~~~d~~~a-------~~   95 (209)
                      ++|+|+||+|.+|++++..|++.|+  +|+++++++.  .....++.....  .+..+.    ..++++++       +.
T Consensus         8 ~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~   83 (250)
T PRK12939          8 KRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAGG--RAHAIAADLADPASVQRFFDAAAAALG   83 (250)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            6899999999999999999999999  9999988642  112223322111  111111    11122222       25


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      +.|+||+++|......   .+   ..+.+..|+.....+.+.+.++   .+.++++++|.
T Consensus        84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS  143 (250)
T PRK12939         84 GLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS  143 (250)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence            7899999998753211   12   2234567777777777666543   23457777765

>PRK06924 short chain dehydrogenase; Provisional

Probab=98.23  E-value=1.1e-05  Score=66.47  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ++|+|+||+|.+|+.++..|+++|.  +|+++++++
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence            4799999999999999999999998  999999865

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=98.23  E-value=2e-05  Score=64.67  Aligned_cols=115  Identities=21%  Similarity=0.276  Sum_probs=68.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEee----cCCchhhhc-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYM----GNDQLGQAL-------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------   94 (209)
                      .++|+|+||+|++|+.++..|++.|+  +|++++++....  ...++.....  ++..+.    ..+++++++       
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKGG--NAQAFACDITDRDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  999999874211  1122222111  111111    111222322       


Q ss_pred             CCCCEEEEcCCCCCCCC---CCh---hHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~r---~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ...|++|+++|......   .+.   ...+..|+.....+.+.+.+.   .+...++++|.
T Consensus        79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss  139 (250)
T TIGR03206        79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIAS  139 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECc
Confidence            36899999998642111   122   234677887777766665432   23456776764

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK06172 short chain dehydrogenase; Provisional

Probab=98.22  E-value=3.8e-05  Score=63.29  Aligned_cols=113  Identities=16%  Similarity=0.134  Sum_probs=66.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhcC-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQALE-------   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~-------   95 (209)
                      ++|+|+||+|.+|..++..|++.|.  +|+++++++..  ....++.....  .+..+.    ..++++++++       
T Consensus         8 k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~i~~~~~~~~~~~g   83 (253)
T PRK06172          8 KVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREAGG--EALFVACDVTRDAEVKALVEQTIAAYG   83 (253)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            5899999999999999999999998  99999997421  12222322211  111111    1112333333       


Q ss_pred             CCCEEEEcCCCCCCC----CCCh---hHHHHHHHHHHHHHHHH----HHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKP----GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~----g~~r---~~~~~~N~~~~~~i~~~----i~~~~p~~~viv~sn  146 (209)
                      ..|++|+++|.....    ..+.   .+.+..|+.....+.+.    +.+. ....++++|.
T Consensus        84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~sS  144 (253)
T PRK06172         84 RLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQ-GGGAIVNTAS  144 (253)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECc
Confidence            459999999874321    1122   33456777666554443    3322 3356666664

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.21  E-value=7.3e-06  Score=58.02  Aligned_cols=94  Identities=21%  Similarity=0.291  Sum_probs=58.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCC-ccEEEEE-ecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPL-VSRLALY-DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~-D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      ||+|+|+ |.+|.+++..|+..|. ..+|.++ ++++.  ...++.... .  ....  ..+..++++++|+||++.-. 
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~--~~~~~~~~~-~--~~~~--~~~~~~~~~~advvilav~p-   71 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPE--KAAELAKEY-G--VQAT--ADDNEEAAQEADVVILAVKP-   71 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHH--HHHHHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S-G-
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHH--HHHHHHHhh-c--cccc--cCChHHhhccCCEEEEEECH-
Confidence            7999999 9999999999999981 2299966 77653  222222211 0  1111  12457889999999999621 


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                                     ..+.++++.+....++..+|-++||
T Consensus        72 ---------------~~~~~v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   72 ---------------QQLPEVLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             ---------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred             ---------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence                           1124555666444467777766664

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=98.21  E-value=8.8e-06  Score=68.59  Aligned_cols=97  Identities=11%  Similarity=0.119  Sum_probs=61.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhc------CC-CCEEEE
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL------ED-SDVVII  102 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~-aD~Vi~  102 (209)
                      ||+|+||||++|++++..|++.|+  +|.++.|++.....     .......-++...+++.+++      ++ +|.|++
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~~~~~~-----~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~   73 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSSSSSAG-----PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYL   73 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCCccccC-----CCCccccccCCCHHHHHHHHhcccCcCCceeEEEE
Confidence            589999999999999999999998  99999997532110     01000000122233466677      67 999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +++...  .         .....+++++++++.+-. ++++.|
T Consensus        74 ~~~~~~--~---------~~~~~~~~i~aa~~~gv~-~~V~~S  104 (285)
T TIGR03649        74 VAPPIP--D---------LAPPMIKFIDFARSKGVR-RFVLLS  104 (285)
T ss_pred             eCCCCC--C---------hhHHHHHHHHHHHHcCCC-EEEEee
Confidence            865321  1         123445677777765433 566665

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=98.21  E-value=3.8e-05  Score=62.70  Aligned_cols=115  Identities=22%  Similarity=0.301  Sum_probs=67.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeE--eecCCchhh-------hcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAG--YMGNDQLGQ-------ALED   96 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~--~~~~~d~~~-------a~~~   96 (209)
                      .++++|+||+|++|+.++..|+++|.  .|.+.+++....  ...++.. .  .....  +...+++++       .+..
T Consensus         6 ~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~-~--~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T PRK12936          6 GRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELGE-R--VKIFPANLSDRDEVKALGQKAEADLEG   80 (245)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC-c--eEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            35899999999999999999999998  888888764211  1112211 0  01100  100112222       2456


Q ss_pred             CCEEEEcCCCCCCC---C---CChhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           97 SDVVIIPAGVPRKP---G---MTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        97 aD~Vi~~ag~~~~~---g---~~r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      .|.||+++|.....   .   .+..+.+..|+.....+++.+.+.   .+...++++|..
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  140 (245)
T PRK12936         81 VDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSV  140 (245)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCH
Confidence            89999999874321   1   123345677777766666655432   244567777654

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.21  E-value=3.8e-05  Score=63.06  Aligned_cols=117  Identities=12%  Similarity=0.052  Sum_probs=65.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeE----eecCCchhhhcC-------
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG----YMGNDQLGQALE-------   95 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~----~~~~~d~~~a~~-------   95 (209)
                      +.++|+|+||+|++|++++..|++.|.  +|++.+++... ...++.... ..++..    +...++++++++       
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~~~~-~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   79 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQSED-AAEALADEL-GDRAIALQADVTDREQVQAMFATATEHFG   79 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCCCHH-HHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            345899999999999999999999998  88876553211 111111100 001111    111112333332       


Q ss_pred             C-CCEEEEcCCCCCC---------CCCCh---hHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           96 D-SDVVIIPAGVPRK---------PGMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        96 ~-aD~Vi~~ag~~~~---------~g~~r---~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      . .|++|+.+|....         ...+.   .+.+..|+.....+.+.+.++   ...+.+++++..
T Consensus        80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~  147 (253)
T PRK08642         80 KPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTN  147 (253)
T ss_pred             CCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence            2 8999999975310         11122   234667777666666665432   234677777653

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=98.20  E-value=2.6e-05  Score=64.56  Aligned_cols=114  Identities=17%  Similarity=0.191  Sum_probs=70.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a-------~~   95 (209)
                      ++|+|+||+|++|++++..|++.|+  +|++++++..+  ....++.....  ++..+.    ..++++++       +.
T Consensus        13 k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~Dl~d~~~i~~~~~~~~~~~~   88 (259)
T PRK08213         13 KTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALGI--DALWIAADVADEADIERLAEETLERFG   88 (259)
T ss_pred             CEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5899999999999999999999998  99999986421  11122222111  111111    11122221       24


Q ss_pred             CCCEEEEcCCCCCCCC---C---ChhHHHHHHHHHHHHHHHHHHhh----CCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG---M---TRDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~---~r~~~~~~N~~~~~~i~~~i~~~----~p~~~viv~sn  146 (209)
                      ..|.||+++|......   .   ...+.+..|+.....+.+.+.++    .+...++++|.
T Consensus        89 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS  149 (259)
T PRK08213         89 HVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS  149 (259)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            6799999998642111   1   12345678888888888877654    24456777764

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=98.20  E-value=3.3e-05  Score=64.13  Aligned_cols=117  Identities=17%  Similarity=0.138  Sum_probs=65.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCccee-EeecCCchhhh-------cCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVA-GYMGNDQLGQA-------LEDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~aD   98 (209)
                      |+++|+||+|.+|..++..|+++|.  +|++.++++..  ....++.+......+. ++...++.+++       +...|
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id   78 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGID   78 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence            5899999999999999999999998  99999997521  1222332211000000 01111122222       34689


Q ss_pred             EEEEcCCCCCC-C----CCChhHH---HHHHHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 028437           99 VVIIPAGVPRK-P----GMTRDDL---FNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        99 ~Vi~~ag~~~~-~----g~~r~~~---~~~N~~----~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ++|+++|.... +    ..+..++   +..|+.    ..+.++..+.+....+.++++|..
T Consensus        79 ~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~  139 (259)
T PRK08340         79 ALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSV  139 (259)
T ss_pred             EEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCc
Confidence            99999986421 1    1122222   233432    234455555433345677777643

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.19  E-value=1.2e-05  Score=70.78  Aligned_cols=78  Identities=18%  Similarity=0.325  Sum_probs=54.7

Q ss_pred             ccCCCCCCCeEEEEcCCCchHHHHHHHHHhCC-------CccEEEEEecCCc---hhHHHhhcCC--C--------CCcc
Q 028437           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNP-------LVSRLALYDIANT---PGVAADVGHI--N--------TRSE   80 (209)
Q Consensus        21 ~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g-------~~~ev~l~D~~~~---~~~~~dl~~~--~--------~~~~   80 (209)
                      |-+.-..++||+|+|+ |..|.+++..|..++       +  +|.+|.+++.   .....++++.  .        .+..
T Consensus         4 ~~~~~~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~--~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~n   80 (365)
T PTZ00345          4 FQKLRCGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHN--EVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDN   80 (365)
T ss_pred             hhhcccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCC--eEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCc
Confidence            3334456689999999 999999999999887       5  9999998752   1123333321  1        1223


Q ss_pred             eeEeecCCchhhhcCCCCEEEEcC
Q 028437           81 VAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        81 v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +..   ++|+++++++||+||++.
T Consensus        81 i~~---tsdl~eav~~aDiIvlAV  101 (365)
T PTZ00345         81 IVA---VSDLKEAVEDADLLIFVI  101 (365)
T ss_pred             eEE---ecCHHHHHhcCCEEEEEc
Confidence            332   457888999999999985

>PLN00016 RNA-binding protein; Provisional

Probab=98.19  E-value=1.1e-05  Score=71.05  Aligned_cols=98  Identities=16%  Similarity=0.128  Sum_probs=62.3

Q ss_pred             CCCeEEEE----cCCCchHHHHHHHHHhCCCccEEEEEecCCchhHH---------HhhcCCCCCcceeEee-cCCchhh
Q 028437           27 PDRKVAVL----GAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA---------ADVGHINTRSEVAGYM-GNDQLGQ   92 (209)
Q Consensus        27 ~~~kI~Ii----GasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~---------~dl~~~~~~~~v~~~~-~~~d~~~   92 (209)
                      .++||+|+    ||+|++|++++..|++.|+  +|++++++......         .++....    ++.+. +..|+++
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~----v~~v~~D~~d~~~  124 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGKEPSQKMKKEPFSRFSELSSAG----VKTVWGDPADVKS  124 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCCcchhhhccCchhhhhHhhhcC----ceEEEecHHHHHh
Confidence            34689999    9999999999999999999  99999997532110         0111111    11111 1123344


Q ss_pred             hc--CCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           93 AL--EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        93 a~--~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      .+  .++|+||++++..              ...++.+++++++.+.. ++|++|
T Consensus       125 ~~~~~~~d~Vi~~~~~~--------------~~~~~~ll~aa~~~gvk-r~V~~S  164 (378)
T PLN00016        125 KVAGAGFDVVYDNNGKD--------------LDEVEPVADWAKSPGLK-QFLFCS  164 (378)
T ss_pred             hhccCCccEEEeCCCCC--------------HHHHHHHHHHHHHcCCC-EEEEEc
Confidence            44  5799999986421              23457788888765433 566665

>PRK05693 short chain dehydrogenase; Provisional

Probab=98.19  E-value=1.3e-05  Score=67.01  Aligned_cols=114  Identities=18%  Similarity=0.124  Sum_probs=65.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhh-------cCCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQA-------LEDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~aD~V  100 (209)
                      ++++|+||+|++|..++..|++.|+  +|++.+++...  ..++...... .+. ++...+++++.       +.+.|+|
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~--~~~~~~~~~~-~~~~Dl~~~~~~~~~~~~~~~~~~~id~v   76 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARKAED--VEALAAAGFT-AVQLDVNDGAALARLAEELEAEHGGLDVL   76 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHCCCe-EEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            5799999999999999999999998  99999986421  1122211111 011 11111122222       2468999


Q ss_pred             EEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecCC
Q 028437          101 IIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNP  147 (209)
Q Consensus       101 i~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~snP  147 (209)
                      |+++|.....   ..+   ....+..|+.....+.+.+....  ..+.++++|..
T Consensus        77 i~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~  131 (274)
T PRK05693         77 INNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSV  131 (274)
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCc
Confidence            9999864311   112   22345667766655555543321  23456666543

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=98.19  E-value=3.3e-05  Score=63.46  Aligned_cols=113  Identities=19%  Similarity=0.216  Sum_probs=66.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEe----ecCC-------chhhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGY----MGND-------QLGQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~----~~~~-------d~~~a~~   95 (209)
                      ++|+|+||+|++|+.++..|+++|+  +|++++++....  ...++.....  ++...    ...+       ..++.+.
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEAGAEAAAKVATDAGG--SVIYLVADVTKEDEIADMIAAAAAEFG   77 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999999  999999974211  1112221111  11111    1111       2233456


Q ss_pred             CCCEEEEcCCCCCC-C--CCC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~-~--g~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~sn  146 (209)
                      +.|+||+++|.... +  ..+   ..+.+..|......+.+.+    ++.. ..+++++|.
T Consensus        78 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~~v~~ss  137 (255)
T TIGR01963        78 GLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQG-WGRIINIAS  137 (255)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEEcc
Confidence            78999999986431 1  111   2334556776655565555    4333 346666654

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK09135 pteridine reductase; Provisional

Probab=98.19  E-value=4.8e-06  Score=68.12  Aligned_cols=104  Identities=22%  Similarity=0.231  Sum_probs=64.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEee----cCCchhhhc-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM----GNDQLGQAL-------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------   94 (209)
                      ++|+|+||+|++|++++..|+++|+  +|+++++...   .....++.+... ..+..+.    ..+++.+++       
T Consensus         7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   83 (249)
T PRK09135          7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRP-GSAAALQADLLDPDALPELVAACVAAF   83 (249)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999999  9999998531   111122222110 0111111    111222333       


Q ss_pred             CCCCEEEEcCCCCCC-C--C---CChhHHHHHHHHHHHHHHHHHHhh
Q 028437           95 EDSDVVIIPAGVPRK-P--G---MTRDDLFNINAGIVKDLCSAIAKY  135 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~-~--g---~~r~~~~~~N~~~~~~i~~~i~~~  135 (209)
                      ...|+||+++|.... +  .   .+..+++..|+.....+.+.+.++
T Consensus        84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~  130 (249)
T PRK09135         84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQ  130 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHH
Confidence            357999999986321 1  1   123456778998888888887654

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=98.19  E-value=2.5e-05  Score=63.62  Aligned_cols=116  Identities=20%  Similarity=0.298  Sum_probs=68.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch---hHHHhhcCCCCCcceeEe----ecCCchhhh------
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGY----MGNDQLGQA------   93 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~---~~~~dl~~~~~~~~v~~~----~~~~d~~~a------   93 (209)
                      ..++|+|+|++|++|++++..|++.|+  +|++..++...   ....++.....  .+..+    ...+++.++      
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~   79 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALGG--KALAVQGDVSDAESVERAVDEAKA   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999998  88777765321   11222221111  11111    111122222      


Q ss_pred             -cCCCCEEEEcCCCCCCCC---CCh---hHHHHHHHHHHHHHHHHHHhhC---CCeEEEEecC
Q 028437           94 -LEDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKYC---PNAIVNMISN  146 (209)
Q Consensus        94 -~~~aD~Vi~~ag~~~~~g---~~r---~~~~~~N~~~~~~i~~~i~~~~---p~~~viv~sn  146 (209)
                       +.+.|.||+++|......   .+.   ...+..|+.....+.+.+.++.   +..+++++|.
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss  142 (248)
T PRK05557         80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISS  142 (248)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence             246899999998643211   121   2345678877777777776543   2356766664

>PRK07825 short chain dehydrogenase; Provisional

Probab=98.19  E-value=6.9e-05  Score=62.59  Aligned_cols=114  Identities=21%  Similarity=0.197  Sum_probs=66.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCC-CcceeEeecCCc-------hhhhcCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINT-RSEVAGYMGNDQ-------LGQALEDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~-~~~v~~~~~~~d-------~~~a~~~aD   98 (209)
                      ++|+|+||+|.+|..++..|++.|.  +|++.++++...  ...++..... .+++.   ..++       ..+.+.+.|
T Consensus         6 ~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~~~~~id   80 (273)
T PRK07825          6 KVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVVGGPLDVT---DPASFAAFLDAVEADLGPID   80 (273)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccceEEEccCC---CHHHHHHHHHHHHHHcCCCC
Confidence            5899999999999999999999998  899999874221  1122221110 01111   1111       122245789


Q ss_pred             EEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHH----HHHHhhCCCeEEEEecCCC
Q 028437           99 VVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus        99 ~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~----~~i~~~~p~~~viv~snP~  148 (209)
                      ++|+++|......   .+   ....+..|+.....+.    +.+.+. +.+.++++|...
T Consensus        81 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~  139 (273)
T PRK07825         81 VLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR-GRGHVVNVASLA  139 (273)
T ss_pred             EEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEcCcc
Confidence            9999998753211   11   2334566776555444    444432 345777777543

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.19  E-value=8.3e-05  Score=61.25  Aligned_cols=102  Identities=25%  Similarity=0.230  Sum_probs=61.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh---HHHhhcCCCCCcceeEe----ecCCchhh-------hc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGY----MGNDQLGQ-------AL   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~---~~~dl~~~~~~~~v~~~----~~~~d~~~-------a~   94 (209)
                      ++|+|+||+|++|+.++..|+++|.  +|+++++.....   ...++.....  ++..+    ....++.+       .+
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPDDEELAATQQELRALGV--EVIFFPADVADLSAHEAMLDAAQAAW   78 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCchhHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            4799999999999999999999998  999999753211   1122222111  11111    11111212       22


Q ss_pred             CCCCEEEEcCCCCCC---C--CCC---hhHHHHHHHHHHHHHHHHHHh
Q 028437           95 EDSDVVIIPAGVPRK---P--GMT---RDDLFNINAGIVKDLCSAIAK  134 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~---~--g~~---r~~~~~~N~~~~~~i~~~i~~  134 (209)
                      ...|+||+++|....   +  ..+   ..+.+..|+.....+.+.+.+
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~  126 (256)
T PRK12745         79 GRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAK  126 (256)
T ss_pred             CCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHH
Confidence            468999999987421   1  112   234567787777777666544

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=98.18  E-value=3.2e-05  Score=63.45  Aligned_cols=115  Identities=19%  Similarity=0.228  Sum_probs=68.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEe----ecCCchh-------hhcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY----MGNDQLG-------QALED   96 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~----~~~~d~~-------~a~~~   96 (209)
                      .++|+|+||+|.+|.+++..|++.|+  +|+++++++.......+.....  .+..+    ...++++       +....
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (248)
T TIGR01832         5 GKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALGR--RFLSLTADLSDIEAIKALVDSAVEEFGH   80 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            35899999999999999999999999  9999998642222222222110  11111    0111222       22346


Q ss_pred             CCEEEEcCCCCCCCC---C---ChhHHHHHHHHHHHHHHHHHHhh----CCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKPG---M---TRDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g---~---~r~~~~~~N~~~~~~i~~~i~~~----~p~~~viv~sn  146 (209)
                      .|++|+++|......   .   ...+.+..|+.....+.+.+.+.    ...+.++++|.
T Consensus        81 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS  140 (248)
T TIGR01832        81 IDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS  140 (248)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            899999998743111   1   22345667777666666665432    22467777654

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.18  E-value=4.8e-05  Score=66.43  Aligned_cols=111  Identities=16%  Similarity=0.197  Sum_probs=68.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC----C-------CCcceeEeecCCchhhhc
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----N-------TRSEVAGYMGNDQLGQAL   94 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~----~-------~~~~v~~~~~~~d~~~a~   94 (209)
                      +.+|||+|+|+ |.+|..++..|.+.|   +++++.+++.  ...++...    .       .+..+.   .++|+.+++
T Consensus         5 ~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~--~~~~i~~~~~~~~~l~~~~~l~~~i~---~t~d~~~a~   75 (341)
T PRK12439          5 KREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAE--TADDINDNHRNSRYLGNDVVLSDTLR---ATTDFAEAA   75 (341)
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHH--HHHHHHhcCCCcccCCCCcccCCCeE---EECCHHHHH
Confidence            34589999999 999999999999887   4677777642  12222211    0       011222   245777889


Q ss_pred             CCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCCc-HHHHHHHHHH
Q 028437           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNST-VPIAAEVFKK  161 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~~-~~i~~~~~~~  161 (209)
                      +++|+||++..                ...++++++.+..+- ++..++.++|-.+.. ...+++.+.+
T Consensus        76 ~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~  128 (341)
T PRK12439         76 NCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE  128 (341)
T ss_pred             hcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH
Confidence            99999999852                123455666666543 555677777765531 1233455544

>PRK06841 short chain dehydrogenase; Provisional

Probab=98.18  E-value=1.4e-05  Score=65.88  Aligned_cols=116  Identities=22%  Similarity=0.269  Sum_probs=69.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCCCccee-EeecCCchhhh-------cCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVA-GYMGNDQLGQA-------LEDSD   98 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~aD   98 (209)
                      .++|+|+||+|.+|.+++..|+++|.  +|++.++++... ...++...... .+. ++...+++++.       +...|
T Consensus        15 ~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~Dl~~~~~~~~~~~~~~~~~~~~d   91 (255)
T PRK06841         15 GKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLGGNAK-GLVCDVSDSQSVEAAVAAVISAFGRID   91 (255)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhCCceE-EEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            35899999999999999999999998  999999874211 11222211100 000 01111122222       34679


Q ss_pred             EEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           99 VVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        99 ~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      +||+++|......   .+   ....+..|+.....+.+.+.++   ...++++++|.
T Consensus        92 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  148 (255)
T PRK06841         92 ILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLAS  148 (255)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            9999998753211   11   2235677887777777776553   23456777654

>PRK06398 aldose dehydrogenase; Validated

Probab=98.17  E-value=2.5e-05  Score=65.01  Aligned_cols=109  Identities=17%  Similarity=0.262  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhh-------hcCCCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQ-------ALEDSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~-------a~~~aD~Vi  101 (209)
                      ++++|+||+|.+|.+++..|++.|+  +|++.+++............+    +.   ..+++++       .+...|++|
T Consensus         7 k~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~D----~~---~~~~i~~~~~~~~~~~~~id~li   77 (258)
T PRK06398          7 KVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFKVD----VS---NKEQVIKGIDYVISKYGRIDILV   77 (258)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEEcc----CC---CHHHHHHHHHHHHHHcCCCCEEE
Confidence            5899999999999999999999999  999999864211100000111    10   0112222       234689999


Q ss_pred             EcCCCCCCC---CCCh---hHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437          102 IPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus       102 ~~ag~~~~~---g~~r---~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      +++|.....   ..+.   ...+..|+.....+.+.+.++   ...+.+|++|.
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS  131 (258)
T PRK06398         78 NNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIAS  131 (258)
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence            999875321   1222   234677777665555554432   34567777754

>PRK05875 short chain dehydrogenase; Provisional

Probab=98.17  E-value=1.5e-05  Score=66.59  Aligned_cols=117  Identities=17%  Similarity=0.141  Sum_probs=68.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEe----ecCCchhhhcC------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGY----MGNDQLGQALE------   95 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~----~~~~d~~~a~~------   95 (209)
                      .++|+|+||+|++|++++..|++.|+  +|+++++++..  ....++........+..+    ...+++++.++      
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH   84 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            36899999999999999999999999  99999986421  122222211100111111    11112223333      


Q ss_pred             -CCCEEEEcCCCCCCC----CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           96 -DSDVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        96 -~aD~Vi~~ag~~~~~----g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                       ..|++|+++|.....    ..+   ..+.+..|+.....+.+.+.+.   ...+.++++|.
T Consensus        85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS  146 (276)
T PRK05875         85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISS  146 (276)
T ss_pred             CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence             689999999854211    122   2334566777777776655443   23456777764

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=98.17  E-value=2.1e-05  Score=67.59  Aligned_cols=115  Identities=15%  Similarity=0.096  Sum_probs=67.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeE----eecCCchhhhcC------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAG----YMGNDQLGQALE------   95 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~----~~~~~d~~~a~~------   95 (209)
                      .++|+|+||+|+||.+++..|++.|.  +|++.+++...  ....++....  ..+..    +...++.+++++      
T Consensus         6 ~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~   81 (322)
T PRK07453          6 KGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIPP--DSYTIIHIDLGDLDSVRRFVDDFRALG   81 (322)
T ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhccC--CceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            45799999999999999999999998  99999987422  1222332111  11111    111112223332      


Q ss_pred             -CCCEEEEcCCCCCC----CCCC---hhHHHHHHHHHHHHHHHHHH----hhCC-CeEEEEecC
Q 028437           96 -DSDVVIIPAGVPRK----PGMT---RDDLFNINAGIVKDLCSAIA----KYCP-NAIVNMISN  146 (209)
Q Consensus        96 -~aD~Vi~~ag~~~~----~g~~---r~~~~~~N~~~~~~i~~~i~----~~~p-~~~viv~sn  146 (209)
                       ..|++|+.||....    ...+   ....+..|+.....+.+.+.    +... .++|+++|.
T Consensus        82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS  145 (322)
T PRK07453         82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGT  145 (322)
T ss_pred             CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcc
Confidence             48999999986421    1122   23456777766555555444    3322 347777763

>PRK06101 short chain dehydrogenase; Provisional

Probab=98.17  E-value=1.8e-05  Score=65.07  Aligned_cols=114  Identities=18%  Similarity=0.164  Sum_probs=69.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcc-ee-EeecCCchhhhcCC----CCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-VA-GYMGNDQLGQALED----SDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~-v~-~~~~~~d~~~a~~~----aD~Vi~  102 (209)
                      .+++|+||+|.+|..++..|+.+|+  +|+++++++..  ..++.+...... +. ++...+++++++++    .|.+|+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~   77 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSV--LDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF   77 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence            4799999999999999999999998  99999997421  111211110000 11 11111233444443    478888


Q ss_pred             cCCCCCCC---CCCh---hHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437          103 PAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus       103 ~ag~~~~~---g~~r---~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      .+|.....   ..+.   .+.+..|+....++.+.+...- +..+++++|.
T Consensus        78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS  128 (240)
T PRK06101         78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS  128 (240)
T ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence            88753211   1222   3457889888888888877642 3456666654

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.17  E-value=5.5e-05  Score=68.08  Aligned_cols=121  Identities=13%  Similarity=0.153  Sum_probs=68.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCC------c---ceeEeecCCchhhhcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR------S---EVAGYMGNDQLGQALEDS   97 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~------~---~v~~~~~~~d~~~a~~~a   97 (209)
                      ++|||+|+|- |++|..++..|+. ++  +|+.+|+++.  .+..+.....+      .   ....+..+++. +++++|
T Consensus         5 ~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~--~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~-~~~~~a   77 (425)
T PRK15182          5 DEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKK--RILELKNGVDVNLETTEEELREARYLKFTSEI-EKIKEC   77 (425)
T ss_pred             CCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHH--HHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCH-HHHcCC
Confidence            3479999998 9999999999877 57  9999999853  23333322110      0   00011113344 568999


Q ss_pred             CEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEE-ecCCCCCcHHHHHHHHH
Q 028437           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNM-ISNPVNSTVPIAAEVFK  160 (209)
Q Consensus        98 D~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv-~snP~~~~~~i~~~~~~  160 (209)
                      |++|++.+.|.+....      .++..+....+.+.++. +...+|. .|-|.+++--++...+.
T Consensus        78 dvvii~Vptp~~~~~~------~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~  136 (425)
T PRK15182         78 NFYIITVPTPINTYKQ------PDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILA  136 (425)
T ss_pred             CEEEEEcCCCCCCCCC------cchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHH
Confidence            9999999887533211      12233343344454443 3333333 35566543323333333

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.16  E-value=6.6e-05  Score=66.51  Aligned_cols=146  Identities=19%  Similarity=0.087  Sum_probs=82.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ||||+|+|| |+||+.++..|++++- .+|++.|+...+. .+.+.......+..-+....+.+.+++++.|+||+++..
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~   78 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPP   78 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence            579999999 9999999999999984 4999999974321 222222111111111111223567889999999999753


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE---eh---hhHHH
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV---TT---LDVVR  180 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~---~~---lds~r  180 (209)
                      ..            +    ..+++++.+..-+  ++-.|+-.... +-+-..+.++      .+.++   ..   +... 
T Consensus        79 ~~------------~----~~i~ka~i~~gv~--yvDts~~~~~~-~~~~~~a~~A------git~v~~~G~dPGi~nv-  132 (389)
T COG1748          79 FV------------D----LTILKACIKTGVD--YVDTSYYEEPP-WKLDEEAKKA------GITAVLGCGFDPGITNV-  132 (389)
T ss_pred             hh------------h----HHHHHHHHHhCCC--EEEcccCCchh-hhhhHHHHHc------CeEEEcccCcCcchHHH-
Confidence            31            1    2455666655543  33455544422 3344444443      23222   11   2222 


Q ss_pred             HHHHHHHHcCCCCCCeeEEEE
Q 028437          181 AKTFYAGKANVNVAGLLKLLT  201 (209)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~~i  201 (209)
                      +-.+.++++.-..++++-++.
T Consensus       133 ~a~~a~~~~~~~i~si~iy~g  153 (389)
T COG1748         133 LAAYAAKELFDEIESIDIYVG  153 (389)
T ss_pred             HHHHHHHHhhccccEEEEEEe
Confidence            344455666546667765554

>PRK08265 short chain dehydrogenase; Provisional

Probab=98.16  E-value=6.9e-05  Score=62.40  Aligned_cols=114  Identities=22%  Similarity=0.231  Sum_probs=66.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCccee-EeecCCchhhh-------cCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVA-GYMGNDQLGQA-------LEDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~aD   98 (209)
                      ++++|+||+|.+|..++..|++.|.  +|++.|+++...  ...++... .. .+. ++...++++++       +...|
T Consensus         7 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~-~~~~Dl~~~~~~~~~~~~~~~~~g~id   82 (261)
T PRK08265          7 KVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASLGER-AR-FIATDITDDAAIERAVATVVARFGRVD   82 (261)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCe-eE-EEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            5899999999999999999999999  999999975211  11222110 00 000 01111122222       34679


Q ss_pred             EEEEcCCCCCCCC--CCh---hHHHHHHHHHHHHHHHHHHhh--CCCeEEEEecC
Q 028437           99 VVIIPAGVPRKPG--MTR---DDLFNINAGIVKDLCSAIAKY--CPNAIVNMISN  146 (209)
Q Consensus        99 ~Vi~~ag~~~~~g--~~r---~~~~~~N~~~~~~i~~~i~~~--~p~~~viv~sn  146 (209)
                      ++|+++|......  .+.   .+.+..|+.....+.+.+.+.  .+.+.++++|.
T Consensus        83 ~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS  137 (261)
T PRK08265         83 ILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTS  137 (261)
T ss_pred             EEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence            9999998643221  222   234556776665555554432  34566777764

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.16  E-value=2.2e-05  Score=67.54  Aligned_cols=79  Identities=24%  Similarity=0.385  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ..|||+|+|+ |.+|.+++..|...|+  +|.++++++.                      .+++++++++|+||++...
T Consensus         3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~vp~   57 (308)
T PRK14619          3 QPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAVSM   57 (308)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEECCh
Confidence            4579999999 9999999999999999  9999998631                      1345677889998888421


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhh--CCCeEEEEecC
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISN  146 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~--~p~~~viv~sn  146 (209)
                                      ..++++++.+..+  .++.+++..++
T Consensus        58 ----------------~~~~~v~~~l~~~~~~~~~ivi~~s~   83 (308)
T PRK14619         58 ----------------KGVRPVAEQVQALNLPPETIIVTATK   83 (308)
T ss_pred             ----------------HHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence                            2234445555442  34566666665

>PRK07814 short chain dehydrogenase; Provisional

Probab=98.16  E-value=3e-05  Score=64.58  Aligned_cols=115  Identities=18%  Similarity=0.175  Sum_probs=70.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEe----ecCCchhhh-------c
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGY----MGNDQLGQA-------L   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~----~~~~d~~~a-------~   94 (209)
                      .++++|+||+|++|.+++..|+++|.  +|+++++++..  ....++....  ..+..+    ...++++++       +
T Consensus        10 ~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (263)
T PRK07814         10 DQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAF   85 (263)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  99999997421  1122232211  111111    111112222       3


Q ss_pred             CCCCEEEEcCCCCCCCC---C---ChhHHHHHHHHHHHHHHHHHHh----hCCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPG---M---TRDDLFNINAGIVKDLCSAIAK----YCPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~---~r~~~~~~N~~~~~~i~~~i~~----~~p~~~viv~sn  146 (209)
                      ...|+||++||......   .   +..+.+..|+.....+.+.+.+    ..+.+.++++|.
T Consensus        86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS  147 (263)
T PRK07814         86 GRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS  147 (263)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence            46899999998643211   1   1334567777777777766654    244567777765

>PRK07890 short chain dehydrogenase; Provisional

Probab=98.16  E-value=1.2e-05  Score=66.38  Aligned_cols=114  Identities=18%  Similarity=0.198  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEe----ecCCchhh-------hcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGY----MGNDQLGQ-------ALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~----~~~~d~~~-------a~~   95 (209)
                      ++|+|+||+|++|++++..|+++|.  +|+++++++..  ....++.....  ++..+    ...++++.       .+.
T Consensus         6 k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (258)
T PRK07890          6 KVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLGR--RALAVPTDITDEDQCANLVALALERFG   81 (258)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhCC--ceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999998  99999987521  11222221110  11111    11112222       234


Q ss_pred             CCCEEEEcCCCCCC--C--CCC---hhHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRK--P--GMT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~--~--g~~---r~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~sn  146 (209)
                      ..|+||+++|....  +  ..+   ....+..|+.....+.+.+.++-  ....+|++|.
T Consensus        82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS  141 (258)
T PRK07890         82 RVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS  141 (258)
T ss_pred             CccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            68999999986421  1  122   23446777777777777776532  1246777654

>PRK06181 short chain dehydrogenase; Provisional

Probab=98.15  E-value=3.1e-05  Score=64.22  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=69.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------~   95 (209)
                      ++|+|+||+|++|..++..|++.|+  +|+++++++..  ....++.....  .+..+.    ..+++++++       .
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~   77 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHGG--EALVVPTDVSDAEACERLIEAAVARFG   77 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999998  99999987421  11222322211  111111    111222222       3


Q ss_pred             CCCEEEEcCCCCCCCC---C-Ch---hHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPG---M-TR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~-~r---~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~snP  147 (209)
                      +.|+||+++|......   . +.   .+.+..|+.....+.+.+.++.  ..+.++++|..
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~  138 (263)
T PRK06181         78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSL  138 (263)
T ss_pred             CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence            6799999998643221   1 22   2346778888777777765432  23566666543

>PRK06914 short chain dehydrogenase; Provisional

Probab=98.15  E-value=0.00013  Score=61.19  Aligned_cols=115  Identities=14%  Similarity=0.125  Sum_probs=65.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-cCCc---hh------hhcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-GNDQ---LG------QALED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~~d---~~------~a~~~   96 (209)
                      +.++|+||+|++|++++..|+++|+  +|+++++++..  ....++.+......+..+. +-+|   ++      +.+..
T Consensus         4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   81 (280)
T PRK06914          4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR   81 (280)
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence            3689999999999999999999998  99999986421  1111222211111121111 1112   21      12345


Q ss_pred             CCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~sn  146 (209)
                      .|+||+++|.....   ..+   ..+.+..|+.....+++.+    ++.. ...++++|.
T Consensus        82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~vsS  140 (280)
T PRK06914         82 IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQK-SGKIINISS  140 (280)
T ss_pred             eeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEECc
Confidence            79999999865311   111   2334567777766666554    4332 345666654

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=98.14  E-value=6.9e-05  Score=62.09  Aligned_cols=115  Identities=19%  Similarity=0.280  Sum_probs=66.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeE----eecCCchhhh-------cCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG----YMGNDQLGQA-------LEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~----~~~~~d~~~a-------~~~a   97 (209)
                      ++++|+||+|.+|..++..|++.|.  +|++++++........+.....  ++..    +...++.+++       +...
T Consensus         9 k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   84 (251)
T PRK12481          9 KVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALGR--KFHFITADLIQQKDIDSIVSQAVEVMGHI   84 (251)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcCC--eEEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence            5799999999999999999999999  9999988542222222221111  1111    1111122222       3457


Q ss_pred             CEEEEcCCCCCCCC---CC---hhHHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCC
Q 028437           98 DVVIIPAGVPRKPG---MT---RDDLFNINAGIVK----DLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        98 D~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~snP  147 (209)
                      |++|++||......   .+   ....+..|+....    .+.+.+.+....+.+|++|..
T Consensus        85 D~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~  144 (251)
T PRK12481         85 DILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASM  144 (251)
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCCh
Confidence            99999998753211   12   2234556665444    444444443334677777653

>PRK05866 short chain dehydrogenase; Provisional

Probab=98.13  E-value=4.1e-05  Score=65.23  Aligned_cols=115  Identities=13%  Similarity=0.132  Sum_probs=65.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcce-e-EeecCCchhhhc-------CCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEV-A-GYMGNDQLGQAL-------EDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v-~-~~~~~~d~~~a~-------~~a   97 (209)
                      ++|+|+||+|.+|..++..|++.|+  +|++++++...  ....++......... . ++...++.++++       .+.
T Consensus        41 k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  118 (293)
T PRK05866         41 KRILLTGASSGIGEAAAEQFARRGA--TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGV  118 (293)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5899999999999999999999998  99999997421  112222211110000 0 011111222333       378


Q ss_pred             CEEEEcCCCCCCCC--C---C---hhHHHHHHHHHHHHHHH----HHHhhCCCeEEEEecC
Q 028437           98 DVVIIPAGVPRKPG--M---T---RDDLFNINAGIVKDLCS----AIAKYCPNAIVNMISN  146 (209)
Q Consensus        98 D~Vi~~ag~~~~~g--~---~---r~~~~~~N~~~~~~i~~----~i~~~~p~~~viv~sn  146 (209)
                      |++|++||......  .   +   ....+..|+.....+++    .+++. ..+.++++|.
T Consensus       119 d~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS  178 (293)
T PRK05866        119 DILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLER-GDGHIINVAT  178 (293)
T ss_pred             CEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcEEEEECC
Confidence            99999998753211  0   1   12345566655444444    44433 3456666653

>PRK05884 short chain dehydrogenase; Provisional

Probab=98.13  E-value=1.6e-05  Score=64.95  Aligned_cols=113  Identities=10%  Similarity=0.067  Sum_probs=65.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEeecCCchhhhcC----CCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALE----DSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~~----~aD~Vi~  102 (209)
                      ||++|+||+|.+|++++..|++.|.  +|+++++++.+.  ...++.......++.   ..++++++++    ..|++|+
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~D~~---~~~~v~~~~~~~~~~id~lv~   75 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARRDDLEVAAKELDVDAIVCDNT---DPASLEEARGLFPHHLDTIVN   75 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhccCcEEecCCC---CHHHHHHHHHHHhhcCcEEEE
Confidence            4899999999999999999999998  999999864211  111121100011111   1122333332    5799999


Q ss_pred             cCCCCC---CCC--------CChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437          103 PAGVPR---KPG--------MTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus       103 ~ag~~~---~~g--------~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      ++|...   .+.        .+....+..|+...-.+.+.+.+.- ..+.++++|.
T Consensus        76 ~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS  131 (223)
T PRK05884         76 VPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVP  131 (223)
T ss_pred             CCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEec
Confidence            987421   110        1123345667766556655554432 3466777753

>PRK07024 short chain dehydrogenase; Provisional

Probab=98.13  E-value=1.3e-05  Score=66.49  Aligned_cols=113  Identities=24%  Similarity=0.192  Sum_probs=65.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhc-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQAL-------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------   94 (209)
                      +++|+|+||+|.+|..++..|++.|.  +|++++++...  ....++....   ++..+.    ..+++++++       
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~i~~~~~~~~~~~   76 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRTDALQAFAARLPKAA---RVSVYAADVRDADALAAAAADFIAAH   76 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcccCC---eeEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            35899999999999999999999998  99999987421  1112222111   111111    111222322       


Q ss_pred             CCCCEEEEcCCCCCCCC----CC---hhHHHHHHHHHHHHHHH----HHHhhCCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCS----AIAKYCPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~~~i~~----~i~~~~p~~~viv~sn  146 (209)
                      ...|++|+++|......    .+   ....+..|+.....+.+    .+++.. .+.++++|.
T Consensus        77 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~-~~~iv~isS  138 (257)
T PRK07024         77 GLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAAR-RGTLVGIAS  138 (257)
T ss_pred             CCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcC-CCEEEEEec
Confidence            23699999998753211    11   23345667665555444    554433 356666654

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=98.12  E-value=6.7e-05  Score=61.67  Aligned_cols=120  Identities=20%  Similarity=0.241  Sum_probs=70.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCC-cceeEeec----CC-------ch
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTR-SEVAGYMG----ND-------QL   90 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~-~~v~~~~~----~~-------d~   90 (209)
                      +.+.++|+|+|++|++|.+++..|++.|.  +|++++++...  ....++.+.... ..+.....    .+       .+
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   86 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTI   86 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHH
Confidence            33456899999999999999999999998  99999997521  122233322110 11110000    00       12


Q ss_pred             hhhcCCCCEEEEcCCCCCC--C--CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           91 GQALEDSDVVIIPAGVPRK--P--GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        91 ~~a~~~aD~Vi~~ag~~~~--~--g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      .+.+...|.||++||....  +  ..+   ..+.+..|+.....+.+.+.++   .+...++++|.
T Consensus        87 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss  152 (247)
T PRK08945         87 EEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSS  152 (247)
T ss_pred             HHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence            2334568999999986421  1  112   2345667877666666655432   34556776664

>PRK09291 short chain dehydrogenase; Provisional

Probab=98.12  E-value=7.2e-05  Score=61.63  Aligned_cols=115  Identities=18%  Similarity=0.173  Sum_probs=65.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCccee--EeecCCchhhhcC-CCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVA--GYMGNDQLGQALE-DSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~--~~~~~~d~~~a~~-~aD~Vi~~  103 (209)
                      ++|+|+||+|.+|+.++..|++.|.  +|++.++++...  .............+.  ++....++++++. +.|+||++
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~   80 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN   80 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence            4799999999999999999999998  999998864211  111111111111111  1111223445554 89999999


Q ss_pred             CCCCCCCC---CCh---hHHHHHHHHHHH----HHHHHHHhhCCCeEEEEecC
Q 028437          104 AGVPRKPG---MTR---DDLFNINAGIVK----DLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       104 ag~~~~~g---~~r---~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~sn  146 (209)
                      +|......   .+.   ...+..|+....    .+.+.+.+... .+++++|.
T Consensus        81 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~SS  132 (257)
T PRK09291         81 AGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGK-GKVVFTSS  132 (257)
T ss_pred             CCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEEcC
Confidence            98753211   112   223445655443    34444444333 56777764

>PRK08264 short chain dehydrogenase; Validated

Probab=98.12  E-value=2.9e-05  Score=63.38  Aligned_cols=115  Identities=15%  Similarity=0.069  Sum_probs=68.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhcC---CCCEEEEc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQALE---DSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~---~aD~Vi~~  103 (209)
                      .++|+|+||+|.+|+.++..|++.|. .+|++++++..+..  + ...... .+. ++...+++++.++   ..|+||++
T Consensus         6 ~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~--~-~~~~~~-~~~~D~~~~~~~~~~~~~~~~id~vi~~   80 (238)
T PRK08264          6 GKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVT--D-LGPRVV-PLQLDVTDPASVAAAAEAASDVTILVNN   80 (238)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhh--h-cCCceE-EEEecCCCHHHHHHHHHhcCCCCEEEEC
Confidence            35899999999999999999999885 37888988642211  1 111100 011 1111123333333   57999999


Q ss_pred             CCCCCCCC----CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437          104 AGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus       104 ag~~~~~g----~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      +|.....+    .+   ..+.+..|+.....+.+.+.+.   .....++++|..
T Consensus        81 ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~  134 (238)
T PRK08264         81 AGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSV  134 (238)
T ss_pred             CCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCh
Confidence            98732111    12   2334567777777777765543   234567777654

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=98.12  E-value=9.3e-06  Score=67.52  Aligned_cols=112  Identities=18%  Similarity=0.150  Sum_probs=61.2

Q ss_pred             EEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--h--HH-HhhcCCC--------CCcceeEeecC----------Cc
Q 028437           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--G--VA-ADVGHIN--------TRSEVAGYMGN----------DQ   89 (209)
Q Consensus        33 IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~--~~-~dl~~~~--------~~~~v~~~~~~----------~d   89 (209)
                      |||||||+|++++..|++.+...+|+++.|....  +  .. ..+.+..        ...+++.+.+.          ++
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            6999999999999999987752289999886421  1  11 1111111        02234433211          12


Q ss_pred             hhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        90 ~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +++..+++|.|||+|+.... ..+..++...|+..++++++.+.+.... +++++|.
T Consensus        81 ~~~L~~~v~~IiH~Aa~v~~-~~~~~~~~~~NV~gt~~ll~la~~~~~~-~~~~iST  135 (249)
T PF07993_consen   81 YQELAEEVDVIIHCAASVNF-NAPYSELRAVNVDGTRNLLRLAAQGKRK-RFHYIST  135 (249)
T ss_dssp             HHHHHHH--EEEE--SS-SB-S-S--EEHHHHHHHHHHHHHHHTSSS----EEEEEE
T ss_pred             hhccccccceeeecchhhhh-cccchhhhhhHHHHHHHHHHHHHhccCc-ceEEecc
Confidence            33344789999999876432 2234457789999999999999854333 7777764

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PRK07023 short chain dehydrogenase; Provisional

Probab=98.12  E-value=8.3e-06  Score=66.94  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ||+|+|+||+|++|..++..|++.|+  +|++++++.
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~   35 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR   35 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence            46999999999999999999999998  999999864

>PRK06196 oxidoreductase; Provisional

Probab=98.11  E-value=4.2e-05  Score=65.63  Aligned_cols=112  Identities=19%  Similarity=0.141  Sum_probs=66.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCC-CCcceeEeecCCchhhh-------cCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHIN-TRSEVAGYMGNDQLGQA-------LEDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~-~~~~v~~~~~~~d~~~a-------~~~aD   98 (209)
                      ++|+|+||+|++|.+++..|++.|+  +|++.++++...  ...++.... ...++..   .++.+++       +.+.|
T Consensus        27 k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d---~~~v~~~~~~~~~~~~~iD  101 (315)
T PRK06196         27 KTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVEVVMLDLAD---LESVRAFAERFLDSGRRID  101 (315)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCeEEEccCCC---HHHHHHHHHHHHhcCCCCC
Confidence            5799999999999999999999999  999999974221  112222111 0111111   1122222       34689


Q ss_pred             EEEEcCCCCCCCC----CChhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 028437           99 VVIIPAGVPRKPG----MTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        99 ~Vi~~ag~~~~~g----~~r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ++|++||....+.    ......+..|+..    ++.+.+.+++. ..++++++|.
T Consensus       102 ~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS  156 (315)
T PRK06196        102 ILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG-AGARVVALSS  156 (315)
T ss_pred             EEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCeEEEECC
Confidence            9999998643221    1123445666655    45555555543 3457777764

>PRK08263 short chain dehydrogenase; Provisional

Probab=98.11  E-value=1.8e-05  Score=66.36  Aligned_cols=114  Identities=13%  Similarity=-0.032  Sum_probs=65.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-HHhhcCCCCCcceeE-eecCCchhh-------hcCCCCE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHINTRSEVAG-YMGNDQLGQ-------ALEDSDV   99 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-~~dl~~~~~~~~v~~-~~~~~d~~~-------a~~~aD~   99 (209)
                      ++|+|+||+|++|++++..|+++|+  +|++.++++.... ..+....... .+.. +....++++       .+...|.
T Consensus         4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~d~   80 (275)
T PRK08263          4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTATLADLAEKYGDRLL-PLALDVTDRAAVFAAVETAVEHFGRLDI   80 (275)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhccCCee-EEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4799999999999999999999998  9999998742211 1111111100 0000 100112222       2346799


Q ss_pred             EEEcCCCCCCCC---C---ChhHHHHHHHHHHHHHHHH----HHhhCCCeEEEEecC
Q 028437          100 VIIPAGVPRKPG---M---TRDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (209)
Q Consensus       100 Vi~~ag~~~~~g---~---~r~~~~~~N~~~~~~i~~~----i~~~~p~~~viv~sn  146 (209)
                      ||+++|......   .   +..+.+..|+.....+.+.    +++.. ...++++|.
T Consensus        81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~vsS  136 (275)
T PRK08263         81 VVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQR-SGHIIQISS  136 (275)
T ss_pred             EEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEcC
Confidence            999999753211   1   2334567787765555544    44433 345666653

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.11  E-value=0.0001  Score=62.70  Aligned_cols=100  Identities=20%  Similarity=0.256  Sum_probs=61.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC---CcceeE-eecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT---RSEVAG-YMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~---~~~v~~-~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||+|+|+ |.+|..++..|.+.|+  +|.++++++...  ..+.....   ...... ....++.++ .+++|+||++.
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~   74 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHL--DALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAV   74 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHH--HHHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence            58999999 9999999999999998  999999954211  11111111   001110 011234444 48999999996


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNS  150 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~-~p~~~viv~snP~~~  150 (209)
                      ...                .+.++++.+..+ .++..++...|..+.
T Consensus        75 k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~  105 (304)
T PRK06522         75 KAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGH  105 (304)
T ss_pred             ccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCc
Confidence            321                123444555543 356678888898773

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.11  E-value=2.7e-05  Score=63.41  Aligned_cols=115  Identities=20%  Similarity=0.250  Sum_probs=65.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh---HHHhhcCCCCCcceeEee----cCCchhhh-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYM----GNDQLGQA-------   93 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~---~~~dl~~~~~~~~v~~~~----~~~d~~~a-------   93 (209)
                      +++|+|+||+|.+|+.++..|+++|+  ++.+..+.....   ...++....  ..+..+.    ..++++++       
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSDEEAAEELVEAVEALG--RRAQAVQADVTDKAALEAAVAAAVER   81 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCcCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999999  877765543211   111121111  1111111    11122222       


Q ss_pred             cCCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           94 LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        94 ~~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      +.+.|.||+++|......   .+   ..+.+..|+.....+.+.+.++   .....++++|.
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS  143 (249)
T PRK12825         82 FGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISS  143 (249)
T ss_pred             cCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECc
Confidence            246799999998643211   12   2345667777777777666322   23346666654

>PRK07074 short chain dehydrogenase; Provisional

Probab=98.11  E-value=4.1e-05  Score=63.24  Aligned_cols=116  Identities=26%  Similarity=0.233  Sum_probs=65.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEeecCCchhhhcC-------CCCE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALE-------DSDV   99 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~~-------~aD~   99 (209)
                      .+++|+||+|++|..++..|++.|.  +|+++++++...  ...++.........-+....+++.++++       +.|+
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   80 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDV   80 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            3799999999999999999999998  999999874221  1222321111000000111112223333       5799


Q ss_pred             EEEcCCCCCCCC---CChhH---HHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437          100 VIIPAGVPRKPG---MTRDD---LFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus       100 Vi~~ag~~~~~g---~~r~~---~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ||+++|......   .+..+   .+..|......+++.+...   .+...++++|.
T Consensus        81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  136 (257)
T PRK07074         81 LVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGS  136 (257)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcc
Confidence            999998643211   12222   2456666666666555332   23456666664

>PRK12742 oxidoreductase; Provisional

Probab=98.11  E-value=0.00012  Score=59.55  Aligned_cols=115  Identities=17%  Similarity=0.224  Sum_probs=63.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcC-CCCCcceeEeecCCchhhh---cCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-INTRSEVAGYMGNDQLGQA---LEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~-~~~~~~v~~~~~~~d~~~a---~~~aD~Vi~~a  104 (209)
                      ++|+|+||+|.+|+.++..|++.|.  +|++.++.... ...++.. .......-+.....++.+.   ....|++|+++
T Consensus         7 k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~~~~-~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~a   83 (237)
T PRK12742          7 KKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAGSKD-AAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNA   83 (237)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCCHH-HHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECC
Confidence            5899999999999999999999998  88887653211 1111111 0110000001000112222   34579999999


Q ss_pred             CCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh-CCCeEEEEecC
Q 028437          105 GVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (209)
Q Consensus       105 g~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~-~p~~~viv~sn  146 (209)
                      |......   .+   ....+..|+.....++..+.+. .+.+.++++|.
T Consensus        84 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  132 (237)
T PRK12742         84 GIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGS  132 (237)
T ss_pred             CCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            8753211   12   2345667776666665444443 23456766654

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=98.11  E-value=3.6e-05  Score=67.36  Aligned_cols=69  Identities=17%  Similarity=0.324  Sum_probs=48.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCC--------CccEEEEEecCC---chhHHHhhcCC--C--------CCcceeEeecCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNP--------LVSRLALYDIAN---TPGVAADVGHI--N--------TRSEVAGYMGND   88 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g--------~~~ev~l~D~~~---~~~~~~dl~~~--~--------~~~~v~~~~~~~   88 (209)
                      ||+|+|+ |..|.+++..|..++        +  +|.+|.+++   .......++..  .        .+..+..   ++
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~--~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~   74 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEE--SVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VP   74 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCc--eEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---EC
Confidence            6999999 999999999999988        7  999999843   11222222211  1        1222332   46


Q ss_pred             chhhhcCCCCEEEEcC
Q 028437           89 QLGQALEDSDVVIIPA  104 (209)
Q Consensus        89 d~~~a~~~aD~Vi~~a  104 (209)
                      |+++++++||+||++.
T Consensus        75 dl~eal~~ADiIIlAV   90 (342)
T TIGR03376        75 DLVEAAKGADILVFVI   90 (342)
T ss_pred             CHHHHHhcCCEEEEEC
Confidence            8889999999999984

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.10  E-value=7.6e-05  Score=63.63  Aligned_cols=99  Identities=11%  Similarity=0.104  Sum_probs=61.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC-----Cccee-EeecCCchhhhcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----RSEVA-GYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~-----~~~v~-~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      |||+|+|+ |.+|..++..|.+.|+  +|.++++ +..  ...+.+...     ..... .....++.+++.+++|+||+
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r-~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil   74 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVR-PKR--AKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL   74 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEec-HHH--HHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence            68999999 9999999999999999  9999998 321  111222110     00000 00012344555689999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~  149 (209)
                      +....                ...++++.+..+. ++..++.+.|..+
T Consensus        75 avk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~  106 (305)
T PRK12921         75 AVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIG  106 (305)
T ss_pred             Eeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence            96322                1233445555433 5567777889876

>PRK06138 short chain dehydrogenase; Provisional

Probab=98.10  E-value=2.7e-05  Score=63.92  Aligned_cols=113  Identities=19%  Similarity=0.212  Sum_probs=66.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhc-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQAL-------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------   94 (209)
                      .++++|+||+|.+|++++..|+++|+  +|++++++...  ....++. ..  ..+..+.    ...++++++       
T Consensus         5 ~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~-~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~   79 (252)
T PRK06138          5 GRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDAEAAERVAAAIA-AG--GRAFARQGDVGSAEAVEALVDFVAARW   79 (252)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCHHHHHHHHHHHh-cC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  99999987421  1122222 11  1111111    111223332       


Q ss_pred             CCCCEEEEcCCCCCCC---CCCh---hHHHHHHHHHHHHHHHH----HHhhCCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~---g~~r---~~~~~~N~~~~~~i~~~----i~~~~p~~~viv~sn  146 (209)
                      .+.|+||+++|.....   ..+.   .+.+..|+.....+.+.    +++. ....++++|.
T Consensus        80 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS  140 (252)
T PRK06138         80 GRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQ-GGGSIVNTAS  140 (252)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhc-CCeEEEEECC
Confidence            3789999999864311   1122   23356777666554444    4433 3456666654

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.10  E-value=5.6e-05  Score=65.61  Aligned_cols=99  Identities=23%  Similarity=0.268  Sum_probs=61.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCC-----c-ce----eEeecCCchhhhcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR-----S-EV----AGYMGNDQLGQALEDS   97 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~-----~-~v----~~~~~~~d~~~a~~~a   97 (209)
                      +|||+|+|+ |.+|..++..|.+.|+  +|.++|+++..   ..+......     . ..    ..+..+++. ++++++
T Consensus         2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   74 (341)
T PRK08229          2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIG---DELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATA   74 (341)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHH---HHHHhcCceeecCCCcceecccceeEeccCh-hhccCC
Confidence            479999999 9999999999999999  99999985421   111111100     0 00    011113344 578899


Q ss_pred             CEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCC
Q 028437           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN  149 (209)
Q Consensus        98 D~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~-~p~~~viv~snP~~  149 (209)
                      |+||++...+.                ..++++.+... .++..++..+|..+
T Consensus        75 D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~  111 (341)
T PRK08229         75 DLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVR  111 (341)
T ss_pred             CEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence            99999963221                12334445444 35666777788776

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=98.10  E-value=7.5e-05  Score=61.34  Aligned_cols=110  Identities=22%  Similarity=0.239  Sum_probs=65.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhh-------cCCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQA-------LEDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~aD~V  100 (209)
                      ++++|+||+|++|+.++..|++.|+  +|++++++...     ....... .+. ++...+++++.       +...|+|
T Consensus         9 k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~~~-----~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~id~v   80 (252)
T PRK08220          9 KTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAFLT-----QEDYPFA-TFVLDVSDAAAVAQVCQRLLAETGPLDVL   80 (252)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecchhh-----hcCCceE-EEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5899999999999999999999999  99999986410     0000000 000 01011122232       3357999


Q ss_pred             EEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437          101 IIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus       101 i~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      |+++|.....   ..+   ....+..|+.....+++.+...   ...+.++++|.
T Consensus        81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss  135 (252)
T PRK08220         81 VNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGS  135 (252)
T ss_pred             EECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            9999875311   112   2345677777666666665432   23456666664

>PRK09186 flagellin modification protein A; Provisional

Probab=98.10  E-value=2.6e-05  Score=64.29  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .++|+|+||+|.+|.+++..|++.|+  +|++.++++
T Consensus         4 ~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~   38 (256)
T PRK09186          4 GKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK   38 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence            45899999999999999999999999  999998864

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=98.09  E-value=0.0001  Score=60.99  Aligned_cols=117  Identities=15%  Similarity=0.193  Sum_probs=66.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a-------~~   95 (209)
                      ++|+|+||+|++|.+++..|++.|+  +|+++|++...  ....++........+..+.    ..++++++       +.
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3799999999999999999999998  99999986421  1112222110000111111    11112222       24


Q ss_pred             CCCEEEEcCCCCCCC---CCCh---hHHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVK----DLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~r---~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~snP  147 (209)
                      ..|+||+++|.+...   ..+.   ...+..|+....    .+.+.+.+..+.+.++++|..
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~  142 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSK  142 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence            679999999875421   1222   233566766544    444444444434677777553

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=98.09  E-value=6.6e-05  Score=60.95  Aligned_cols=115  Identities=17%  Similarity=0.215  Sum_probs=69.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeE--eecCCchhhhc-------CCCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAG--YMGNDQLGQAL-------EDSD   98 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~-------~~aD   98 (209)
                      |+|+|++|++|+.++..|+++|+  +|++++++..   .....++.+.........  +....++++++       ...|
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   78 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPID   78 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            57999999999999999999998  9999988531   112222322211111111  11111223333       3469


Q ss_pred             EEEEcCCCCCCC---C---CChhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           99 VVIIPAGVPRKP---G---MTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        99 ~Vi~~ag~~~~~---g---~~r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      +||+++|.....   .   .+..+.+..|+.....+.+.+.++   .....++++|..
T Consensus        79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~  136 (239)
T TIGR01830        79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSV  136 (239)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence            999999864311   1   123445678888888888877654   234567777654

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK06953 short chain dehydrogenase; Provisional

Probab=98.09  E-value=3.4e-05  Score=62.58  Aligned_cols=114  Identities=16%  Similarity=0.207  Sum_probs=67.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhh---cC--CCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA---LE--DSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a---~~--~aD~Vi~~  103 (209)
                      ++++|+||+|.+|++++..|++.|.  +|+++++++..  ..++.........-++....++++.   +.  ..|+||++
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~--~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~   77 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAA--LAALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYV   77 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEEC
Confidence            4799999999999999999999998  99999987421  1122221111000001111122222   33  47999999


Q ss_pred             CCCCCC---C--CCC---hhHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecC
Q 028437          104 AGVPRK---P--GMT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (209)
Q Consensus       104 ag~~~~---~--g~~---r~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~sn  146 (209)
                      +|....   +  ..+   ....+..|+.....+.+.+.++-  ..+.+++++.
T Consensus        78 ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS  130 (222)
T PRK06953         78 AGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSS  130 (222)
T ss_pred             CCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcC
Confidence            987521   1  112   23456788888788877776532  2345555543

>PRK07577 short chain dehydrogenase; Provisional

Probab=98.09  E-value=1.7e-05  Score=64.53  Aligned_cols=108  Identities=16%  Similarity=0.200  Sum_probs=62.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC------CCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE------DSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~------~aD~Vi~  102 (209)
                      ++|+|+||+|.+|..++..|+++|+  +|++++++.......++...       ++...++.+++++      +.|+||+
T Consensus         4 k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~~~~~d~vi~   74 (234)
T PRK07577          4 RTVLVTGATKGIGLALSLRLANLGH--QVIGIARSAIDDFPGELFAC-------DLADIEQTAATLAQINEIHPVDAIVN   74 (234)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCcccccCceEEEe-------eCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence            5899999999999999999999998  99999996532100000000       0111112222232      6899999


Q ss_pred             cCCCCCCCC---CCh---hHHHHHHHHHHHHHH----HHHHhhCCCeEEEEecC
Q 028437          103 PAGVPRKPG---MTR---DDLFNINAGIVKDLC----SAIAKYCPNAIVNMISN  146 (209)
Q Consensus       103 ~ag~~~~~g---~~r---~~~~~~N~~~~~~i~----~~i~~~~p~~~viv~sn  146 (209)
                      ++|.....-   .+.   .+.+..|+.....+.    +.+++. ...+++++|-
T Consensus        75 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS  127 (234)
T PRK07577         75 NVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLR-EQGRIVNICS  127 (234)
T ss_pred             CCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcc
Confidence            998743211   122   233455655544444    444443 3356666653

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.08  E-value=4.5e-05  Score=65.98  Aligned_cols=97  Identities=14%  Similarity=0.362  Sum_probs=62.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC----------CCCcceeEeecCCchhhhc-CCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----------NTRSEVAGYMGNDQLGQAL-EDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~----------~~~~~v~~~~~~~d~~~a~-~~a   97 (209)
                      |||+|+|| |.+|..++..|.+.|+  +|.++++++.  ....+...          ..+..+..   ++++++++ .++
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~--~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~   72 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHT--TFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNA   72 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHH--HHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCC
Confidence            58999999 9999999999999998  9999999642  12222211          01112222   34666666 589


Q ss_pred             CEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHh-h-CCCeEEEEecCCCC
Q 028437           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-Y-CPNAIVNMISNPVN  149 (209)
Q Consensus        98 D~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~-~-~p~~~viv~snP~~  149 (209)
                      |+||++.-.                ..+.++++.+.. + .++..++..+|-.+
T Consensus        73 Dliiiavks----------------~~~~~~l~~l~~~~l~~~~~vv~~~nGi~  110 (326)
T PRK14620         73 TCIILAVPT----------------QQLRTICQQLQDCHLKKNTPILICSKGIE  110 (326)
T ss_pred             CEEEEEeCH----------------HHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence            999998521                223445555554 3 35556677777654

>PRK06197 short chain dehydrogenase; Provisional

Probab=98.07  E-value=3.1e-05  Score=66.06  Aligned_cols=115  Identities=22%  Similarity=0.156  Sum_probs=67.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEee----cCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYM----GNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~----~~~d~~~a-------~~   95 (209)
                      ++|+|+||+|++|.+++..|++.|.  +|++++++....  ...++........+..+.    ..++.+++       +.
T Consensus        17 k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~   94 (306)
T PRK06197         17 RVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP   94 (306)
T ss_pred             CEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence            5899999999999999999999998  999999874221  122232110001111111    11112222       33


Q ss_pred             CCCEEEEcCCCCCCCC----CChhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG----MTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g----~~r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ..|++|++||....+.    ......+..|+..    ++.+.+.+++. ..+++|++|.
T Consensus        95 ~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS  152 (306)
T PRK06197         95 RIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV-PGSRVVTVSS  152 (306)
T ss_pred             CCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC-CCCEEEEECC
Confidence            6899999998643211    1123345666665    66666666653 3457777764

>PRK07454 short chain dehydrogenase; Provisional

Probab=98.07  E-value=4.9e-05  Score=62.21  Aligned_cols=115  Identities=23%  Similarity=0.303  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhc-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQAL-------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------   94 (209)
                      +++++|+|++|.+|..++..|+++|.  +|+++++++..  ....++.....  .+..+.    ..+++++++       
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGW--DLALVARSQDALEALAAELRSTGV--KAAAYSIDLSNPEAIAPGIAELLEQF   81 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhCCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  99999997421  11122222111  111111    111222222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCC
Q 028437           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNP  147 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~----i~~~~p~~~viv~snP  147 (209)
                      ...|++|+++|.....   ..+   ....+..|+.....+.+.    +.+. ....++++|..
T Consensus        82 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS~  143 (241)
T PRK07454         82 GCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRAR-GGGLIINVSSI  143 (241)
T ss_pred             CCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCcEEEEEccH
Confidence            3589999999864321   111   233456666655544444    4432 23567777643

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=98.06  E-value=5.5e-05  Score=62.05  Aligned_cols=115  Identities=17%  Similarity=0.284  Sum_probs=68.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC-c--hhHHHhhcCCCCCcceeEee----cCCchhhhc-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGVAADVGHINTRSEVAGYM----GNDQLGQAL-------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~-~--~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------   94 (209)
                      .+++|+||+|.+|++++..|++.|.  ++++.++.. .  .....++.+...  ++..+.    ...++.+++       
T Consensus         7 ~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (247)
T PRK12935          7 KVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEGH--DVYAVQADVSKVEDANRLVEEAVNHF   82 (247)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999998  887765432 1  112223332211  111111    111222333       


Q ss_pred             CCCCEEEEcCCCCCCCC------CChhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           95 EDSDVVIIPAGVPRKPG------MTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g------~~r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      ...|+||+++|......      .+..+.+..|+.....+.+.+.++   .....++++|..
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  144 (247)
T PRK12935         83 GKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSI  144 (247)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcch
Confidence            34799999998753211      123445678888777777776653   234567777653

>PRK05854 short chain dehydrogenase; Provisional

Probab=98.06  E-value=3.8e-05  Score=66.02  Aligned_cols=115  Identities=18%  Similarity=0.111  Sum_probs=65.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEe----ecCCchhh-------hcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGY----MGNDQLGQ-------ALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~----~~~~d~~~-------a~~   95 (209)
                      ++++|+||+|.+|..++..|++.|.  +|++.+++..+.  ...++........+..+    ...++.++       ...
T Consensus        15 k~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~   92 (313)
T PRK05854         15 KRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR   92 (313)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            5899999999999999999999998  999999975321  22233221100111111    01111222       234


Q ss_pred             CCCEEEEcCCCCCCCC-----CChhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPG-----MTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g-----~~r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ..|++|+.||....+.     ......+..|...    ++.+.+.+++.  .++++++|.-
T Consensus        93 ~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS~  151 (313)
T PRK05854         93 PIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSSI  151 (313)
T ss_pred             CccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEech
Confidence            5899999998743221     1223345556554    44555555432  3566666643

>PRK09134 short chain dehydrogenase; Provisional

Probab=98.06  E-value=3.1e-05  Score=64.14  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEee----cCCchhhhc-----
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM----GNDQLGQAL-----   94 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-----   94 (209)
                      ..++++|+||+|++|.+++..|++.|.  ++++.++...   .....++....  ..+..+.    ..+++++++     
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~   83 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRALG--RRAVALQADLADEAEVRALVARASA   83 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999998  8888766421   11112222111  1121111    111222233     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhhC---CCeEEEEec
Q 028437           95 --EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMIS  145 (209)
Q Consensus        95 --~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~~---p~~~viv~s  145 (209)
                        ...|+||+++|.....   ..+   ....+..|+.....+.+.+.++.   ....+++++
T Consensus        84 ~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~  145 (258)
T PRK09134         84 ALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMI  145 (258)
T ss_pred             HcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEEC
Confidence              3479999999864321   112   23457788887777777766543   234555553

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=98.05  E-value=5.9e-05  Score=67.46  Aligned_cols=103  Identities=18%  Similarity=0.219  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcc-ee-EeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-VA-GYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~-v~-~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      .++|+|+||+|.+|++++..|++.|.  +|+++++++... ...+.+...... +. ++...+++++.+.+.|++|+.||
T Consensus       178 gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~l-~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnAG  254 (406)
T PRK07424        178 GKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDKI-TLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINHG  254 (406)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHH-HHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECCC
Confidence            45899999999999999999999998  999999864211 111211111111 11 11111234556789999999998


Q ss_pred             CCCCCCCCh---hHHHHHHHHHHHHHHHHHH
Q 028437          106 VPRKPGMTR---DDLFNINAGIVKDLCSAIA  133 (209)
Q Consensus       106 ~~~~~g~~r---~~~~~~N~~~~~~i~~~i~  133 (209)
                      .......+.   .+.++.|+.....+.+.+.
T Consensus       255 i~~~~~~s~e~~~~~~~vNv~g~i~Li~a~l  285 (406)
T PRK07424        255 INVHGERTPEAINKSYEVNTFSAWRLMELFF  285 (406)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            754333332   3456778776666666544

>PRK07832 short chain dehydrogenase; Provisional

Probab=98.05  E-value=0.00058  Score=57.08  Aligned_cols=118  Identities=22%  Similarity=0.195  Sum_probs=68.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCc-c-ee-EeecCCch-------hhhcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRS-E-VA-GYMGNDQL-------GQALED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~-~-v~-~~~~~~d~-------~~a~~~   96 (209)
                      ++++|+||+|.+|..++..|++.|.  +|+++++++..  ....++....... . +. ++...++.       .+.+..
T Consensus         1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGS   78 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            3799999999999999999999998  89999986421  1122332211100 0 00 11101111       122446


Q ss_pred             CCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHh----hCCCeEEEEecCCC
Q 028437           97 SDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAK----YCPNAIVNMISNPV  148 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~----~~p~~~viv~snP~  148 (209)
                      .|++|+++|......   .+   ....+..|+.....+++.+..    ....+.++++|...
T Consensus        79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~  140 (272)
T PRK07832         79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAA  140 (272)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence            899999998643111   12   234567777777666666543    22345777776543

>PRK06057 short chain dehydrogenase; Provisional

Probab=98.04  E-value=5.1e-05  Score=62.74  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=31.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ++|+|+||+|++|.+++..|++.|+  +|+++++++
T Consensus         8 ~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~   41 (255)
T PRK06057          8 RVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP   41 (255)
T ss_pred             CEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            5899999999999999999999998  999999864

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=98.04  E-value=4.7e-05  Score=62.86  Aligned_cols=117  Identities=22%  Similarity=0.311  Sum_probs=67.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeE--eecCCchhhh-------cCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAG--YMGNDQLGQA-------LED   96 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~--~~~~~d~~~a-------~~~   96 (209)
                      .++++|+||+|.+|.+++..|++.|.  +|++.++++..  ....++.+.........  ....+++++.       +..
T Consensus         9 ~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   86 (254)
T PRK08085          9 GKNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGP   86 (254)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence            34899999999999999999999998  99999987421  12223332211000000  1011112222       345


Q ss_pred             CCEEEEcCCCCCC-C--CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~-~--g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      .|+||+++|.... +  ..+   ....+..|+.....+.+.+.++   ...++++++|.
T Consensus        87 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  145 (254)
T PRK08085         87 IDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICS  145 (254)
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence            7999999986421 1  112   2335677776666666555543   23456777654

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.04  E-value=9e-05  Score=61.29  Aligned_cols=115  Identities=15%  Similarity=0.175  Sum_probs=65.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhh-------cCCCCEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA-------LEDSDVV  100 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a-------~~~aD~V  100 (209)
                      .++++|+||+|.+|..++..|++.|.  +|++.+++.. ....++.+.......-++....+++++       +...|++
T Consensus         7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~l   83 (255)
T PRK06463          7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVL   83 (255)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            36899999999999999999999998  8888766431 112222221110000011111122222       3467999


Q ss_pred             EEcCCCCCCC---CCC---hhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 028437          101 IIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       101 i~~ag~~~~~---g~~---r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |+++|.....   ..+   ....+..|+..    ++.+++.+++. ..+.+|++|.
T Consensus        84 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS  138 (255)
T PRK06463         84 VNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIAS  138 (255)
T ss_pred             EECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence            9999875311   112   22345667666    45666666543 3456777663

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=98.04  E-value=0.00012  Score=63.09  Aligned_cols=103  Identities=14%  Similarity=0.221  Sum_probs=60.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHH---hhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA---DVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~---dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      .+|||+|+|+ |.+|..++..|.+.|+  +|.++.+++......   .+........+......++. ++...+|+||++
T Consensus         4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vila   79 (313)
T PRK06249          4 ETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVG   79 (313)
T ss_pred             cCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEE
Confidence            4479999999 9999999999999999  999999975221111   01100000011001111222 356789999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCC
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN  149 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~-~p~~~viv~snP~~  149 (209)
                      .-...                ..+.++.+... .++..++...|-.+
T Consensus        80 vK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~  110 (313)
T PRK06249         80 LKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLG  110 (313)
T ss_pred             ecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCC
Confidence            53221                12233334333 36677777888766

>PRK08251 short chain dehydrogenase; Provisional

Probab=98.04  E-value=0.00026  Score=58.03  Aligned_cols=116  Identities=20%  Similarity=0.208  Sum_probs=66.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-cCCc---h-------hhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-GNDQ---L-------GQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~~d---~-------~~a~~   95 (209)
                      ++++|+||+|.+|.+++..|++.|.  +|++.++++..  ....++........+..+. +.++   +       .+.+.
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999998  99999987521  1122222211011111111 1111   1       22345


Q ss_pred             CCCEEEEcCCCCCCCCC---C---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPGM---T---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g~---~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ..|++|+++|.......   +   ..+.+..|+.....+.+.+.+.   .....++++|.
T Consensus        81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  140 (248)
T PRK08251         81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISS  140 (248)
T ss_pred             CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            78999999987532211   1   1234567776666666554322   22345666654

>PRK07109 short chain dehydrogenase; Provisional

Probab=98.03  E-value=0.00022  Score=61.91  Aligned_cols=115  Identities=14%  Similarity=0.135  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcc-ee-EeecCCchhhh-------cCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSE-VA-GYMGNDQLGQA-------LEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~-v~-~~~~~~d~~~a-------~~~a   97 (209)
                      ++|+|+||+|.+|..++..|++.|+  +|+++++++.  .....++........ +. ++...++++++       +...
T Consensus         9 k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~i   86 (334)
T PRK07109          9 QVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPI   86 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence            5899999999999999999999998  9999998742  112223322111100 00 11111122222       3468


Q ss_pred             CEEEEcCCCCCCC---CCChh---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEecC
Q 028437           98 DVVIIPAGVPRKP---GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        98 D~Vi~~ag~~~~~---g~~r~---~~~~~N~----~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |++|+++|.....   ..+..   ..+..|+    ..++.+.+.+.+. ..+.+|++|.
T Consensus        87 D~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~-~~g~iV~isS  144 (334)
T PRK07109         87 DTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR-DRGAIIQVGS  144 (334)
T ss_pred             CEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEeCC
Confidence            9999999864311   11222   2344444    3445566666543 3456777764

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=98.03  E-value=4.9e-05  Score=62.99  Aligned_cols=115  Identities=17%  Similarity=0.213  Sum_probs=66.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCcceeEee----cCCchhhhc-------CC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM----GNDQLGQAL-------ED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------~~   96 (209)
                      ++|+|+||+|.+|..++..|++.|+  +|++++++.. ......+....  ..+..+.    ..++.++.+       ..
T Consensus        16 k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   91 (258)
T PRK06935         16 KVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEFGK   91 (258)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5899999999999999999999999  9999988631 11111222111  1111111    111222233       36


Q ss_pred             CCEEEEcCCCCCC-C--CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           97 SDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        97 aD~Vi~~ag~~~~-~--g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      .|++|+++|.... +  ..+   ..+.+..|+.....+.+.+.++   ...+.++++|..
T Consensus        92 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~  151 (258)
T PRK06935         92 IDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASM  151 (258)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence            7999999986431 1  112   2334566766655555444432   234567777654

>PRK12747 short chain dehydrogenase; Provisional

Probab=98.03  E-value=0.00029  Score=58.03  Aligned_cols=118  Identities=19%  Similarity=0.182  Sum_probs=66.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec-CCc--hhHHHhhcCCCCC-----cceeEeecC----Cchhhhc-
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANT--PGVAADVGHINTR-----SEVAGYMGN----DQLGQAL-   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~-~~~--~~~~~dl~~~~~~-----~~v~~~~~~----~d~~~a~-   94 (209)
                      .++++|+||+|++|.+++..|++.|.  +|.+.+. +..  .....++......     .++......    .+..+.+ 
T Consensus         4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (252)
T PRK12747          4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ   81 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhh
Confidence            35899999999999999999999998  8888753 221  1112223221100     011100000    0111111 


Q ss_pred             -----CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437           95 -----EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus        95 -----~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                           ...|++|++||.....   ..+   ....+..|+.....+++++.+.- ..+.+|++|..
T Consensus        82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~  146 (252)
T PRK12747         82 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSA  146 (252)
T ss_pred             hhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCc
Confidence                 2689999999964211   112   23445678777777666655442 34677777644

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=98.02  E-value=4.6e-05  Score=62.94  Aligned_cols=119  Identities=13%  Similarity=0.112  Sum_probs=69.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCccee--EeecCCchhhhc-------CC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVA--GYMGNDQLGQAL-------ED   96 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~--~~~~~~d~~~a~-------~~   96 (209)
                      .++|+|+||+|.+|+.++..|++.|.  +|+++++++.  .....++..........  ++...+++++++       ..
T Consensus        11 ~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   88 (256)
T PRK06124         11 GQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR   88 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            46899999999999999999999998  9999999742  11222232211100000  011111222222       34


Q ss_pred             CCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCC
Q 028437           97 SDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (209)
Q Consensus        97 aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP~  148 (209)
                      .|.+|+++|.....   ..+   ..+.+..|+.....+.+.+.+.   ...+.++++|...
T Consensus        89 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~  149 (256)
T PRK06124         89 LDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIA  149 (256)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeech
Confidence            69999999864311   111   2234667777666666555432   2345677776543

>PRK07576 short chain dehydrogenase; Provisional

Probab=98.02  E-value=3.9e-05  Score=64.03  Aligned_cols=117  Identities=18%  Similarity=0.182  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeE--eecCCchhhhc-------CCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAG--YMGNDQLGQAL-------EDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~--~~~~~d~~~a~-------~~a   97 (209)
                      .+|+|+||+|.+|..++..|+..|+  +|+++++++..  ....++........+..  +...+++++++       ...
T Consensus        10 k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i   87 (264)
T PRK07576         10 KNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI   87 (264)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4899999999999999999999998  99999986421  11122222111000000  11111222322       357


Q ss_pred             CEEEEcCCCCCCC---CCCh---hHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecCC
Q 028437           98 DVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNP  147 (209)
Q Consensus        98 D~Vi~~ag~~~~~---g~~r---~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~snP  147 (209)
                      |++|+++|.....   ..+.   ...+..|+.....+.+++.+.-  +.+.++++|.+
T Consensus        88 D~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~  145 (264)
T PRK07576         88 DVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAP  145 (264)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECCh
Confidence            9999998754211   1222   2345678777777776665431  34577777654

>PRK05876 short chain dehydrogenase; Provisional

Probab=98.02  E-value=6.5e-05  Score=63.28  Aligned_cols=114  Identities=18%  Similarity=0.188  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEe----ecCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGY----MGNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~----~~~~d~~~a-------~~   95 (209)
                      +.++|+||+|.+|++++..|++.|.  +|++.|+++.  .....++.....  ++..+    ...++++++       +.
T Consensus         7 k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (275)
T PRK05876          7 RGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAFRLLG   82 (275)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            4699999999999999999999998  9999998742  112223332211  11111    111122222       23


Q ss_pred             CCCEEEEcCCCCCCC---CCCh---hHHHHHHHHHHHHHHHHHH----hhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIA----KYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~r---~~~~~~N~~~~~~i~~~i~----~~~p~~~viv~sn  146 (209)
                      ..|++|+.||.....   ..+.   ...+..|+.....+.+.+.    +....+.++++|.
T Consensus        83 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS  143 (275)
T PRK05876         83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS  143 (275)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            579999999874311   1222   2345677766666555543    3333456777764

>PRK06500 short chain dehydrogenase; Provisional

Probab=98.02  E-value=6.3e-05  Score=61.63  Aligned_cols=110  Identities=22%  Similarity=0.213  Sum_probs=68.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-cCCc----------hhhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-GNDQ----------LGQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~~d----------~~~a~~   95 (209)
                      ++|+|+||+|++|+.++..|++.|.  +|+++++++..  ....++..     .+..+. +..+          .++.+.
T Consensus         7 k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (249)
T PRK06500          7 KTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAELGE-----SALVIRADAGDVAAQKALAQALAEAFG   79 (249)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHhCC-----ceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4899999999999999999999998  99999986421  11111211     111110 0111          122235


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEec
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~s  145 (209)
                      ..|++|+++|......   .+   ....+..|+.....+.+++.++- ....+++++
T Consensus        80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~  136 (249)
T PRK06500         80 RLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNG  136 (249)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            7899999998643211   12   23457788888888888887542 223455554

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.02  E-value=0.00013  Score=64.24  Aligned_cols=133  Identities=17%  Similarity=0.225  Sum_probs=79.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHH-----HhhcCCCC---------CcceeEeecCCchhhhc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-----ADVGHINT---------RSEVAGYMGNDQLGQAL   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~-----~dl~~~~~---------~~~v~~~~~~~d~~~a~   94 (209)
                      ++|+|+|- |+||..++..++..|+  +|..+|+++..-..     ..+.+.+.         ..+++.   |+|. +.+
T Consensus        10 ~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~l   82 (436)
T COG0677          10 ATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EEL   82 (436)
T ss_pred             eEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hhc
Confidence            69999999 9999999999999999  99999998521100     00111110         123333   4565 557


Q ss_pred             CCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCe--EEEEecCCCCCcHHHHHHHHHHhCCC--CCCcE
Q 028437           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA--IVNMISNPVNSTVPIAAEVFKKAGTY--NEKKL  170 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~--~viv~snP~~~~~~i~~~~~~~~~~~--p~~~v  170 (209)
                      +.||++++|+-.|-....+      -.+..+.+-++.+.++-..+  .++=.|-|.+++--++-.++...+|+  +.+..
T Consensus        83 ~~~dv~iI~VPTPl~~~~~------pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~  156 (436)
T COG0677          83 KECDVFIICVPTPLKKYRE------PDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFY  156 (436)
T ss_pred             ccCCEEEEEecCCcCCCCC------CChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceee
Confidence            7999999998776543221      12344455556666554333  33334677776544444444443543  44555


Q ss_pred             EEEe
Q 028437          171 FGVT  174 (209)
Q Consensus       171 ig~~  174 (209)
                      +++|
T Consensus       157 lays  160 (436)
T COG0677         157 LAYS  160 (436)
T ss_pred             EeeC
Confidence            6665

>PRK05650 short chain dehydrogenase; Provisional

Probab=98.01  E-value=7e-05  Score=62.52  Aligned_cols=116  Identities=22%  Similarity=0.186  Sum_probs=65.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeE--eecCCchhhh-------cCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAG--YMGNDQLGQA-------LEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~--~~~~~d~~~a-------~~~a   97 (209)
                      |+|+|+||+|.+|..++..|++.|.  +|++.+++...  ....++...........  +...+++++.       +...
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i   78 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGI   78 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999998  99999986421  11222322211100000  1001122222       2468


Q ss_pred             CEEEEcCCCCCCC---CCCh---hHHHHHHHHHHHH----HHHHHHhhCCCeEEEEecCC
Q 028437           98 DVVIIPAGVPRKP---GMTR---DDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        98 D~Vi~~ag~~~~~---g~~r---~~~~~~N~~~~~~----i~~~i~~~~p~~~viv~snP  147 (209)
                      |++|+++|.....   ..+.   ...+..|+.....    +.+.+++.. ...++++|..
T Consensus        79 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS~  137 (270)
T PRK05650         79 DVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIASM  137 (270)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECCh
Confidence            9999999865321   1122   2245667554444    444454433 3466666543

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=98.01  E-value=8.5e-05  Score=61.76  Aligned_cols=113  Identities=19%  Similarity=0.297  Sum_probs=67.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchh-------hhcCCCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLG-------QALEDSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~-------~a~~~aD~Vi  101 (209)
                      ++++|+||+|.+|..++..|+++|.  +|++.++++..........  ...++.   ..++++       +.+...|++|
T Consensus        10 k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~--~~~D~~---~~~~~~~~~~~~~~~~g~id~li   82 (266)
T PRK06171         10 KIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHGGDGQHENYQF--VPTDVS---SAEEVNHTVAEIIEKFGRIDGLV   82 (266)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCccccccCceEE--EEccCC---CHHHHHHHHHHHHHHcCCCCEEE
Confidence            5899999999999999999999999  9999998642111000000  000111   011222       2234679999


Q ss_pred             EcCCCCCCC------------CCCh---hHHHHHHHHHHHHHHHHHHhhC---CCeEEEEecCCC
Q 028437          102 IPAGVPRKP------------GMTR---DDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNPV  148 (209)
Q Consensus       102 ~~ag~~~~~------------g~~r---~~~~~~N~~~~~~i~~~i~~~~---p~~~viv~snP~  148 (209)
                      ++||.....            ..+.   ...+..|+.....+.+.+.++-   +.+.++++|...
T Consensus        83 ~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~  147 (266)
T PRK06171         83 NNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEA  147 (266)
T ss_pred             ECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence            999864210            1122   2356678777777776665442   335677776543

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.00  E-value=0.00011  Score=59.98  Aligned_cols=114  Identities=20%  Similarity=0.311  Sum_probs=66.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-ecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhc-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQAL-------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~-D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------   94 (209)
                      ++|+|+||+|++|..++..|++.|+  ++++. ++++..  .....+....  ..+..+.    ..+++.+.+       
T Consensus         6 ~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (247)
T PRK05565          6 KVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIKEEG--GDAIAVKADVSSEEDVENLVEQIVEKF   81 (247)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            4899999999999999999999998  88888 886421  1112222211  1111111    011222223       


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhC---CCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~---p~~~viv~sn  146 (209)
                      .+.|.||+++|......   .+   ..+.+..|......+.+.+....   ....++++|.
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS  142 (247)
T PRK05565         82 GKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISS  142 (247)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence            27899999998752111   11   23456678877666666655432   2345666654

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=98.00  E-value=3.2e-05  Score=64.30  Aligned_cols=35  Identities=26%  Similarity=0.367  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .++++|+||+|.+|.+++..|++.|.  +|++++++.
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (262)
T TIGR03325         5 GEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA   39 (262)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999999  999999864

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07063 short chain dehydrogenase; Provisional

Probab=98.00  E-value=4.6e-05  Score=63.17  Aligned_cols=116  Identities=22%  Similarity=0.226  Sum_probs=67.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEe----ecCCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGY----MGNDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~----~~~~d~~~a~-------~   95 (209)
                      ++++|+||+|.+|.+++..|++.|.  +|+++++++.  .....++.......++..+    ...+++++++       .
T Consensus         8 k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   85 (260)
T PRK07063          8 KVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG   85 (260)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5799999999999999999999998  9999999742  1222233321001111111    1111222332       4


Q ss_pred             CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ..|++|++||.....   ..+   ....+..|+.....+.+.+.++   ...+.++++|.
T Consensus        86 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS  145 (260)
T PRK07063         86 PLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIAS  145 (260)
T ss_pred             CCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECC
Confidence            689999999864311   112   2234556766655555554322   23467777754

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=98.00  E-value=0.00015  Score=60.02  Aligned_cols=115  Identities=21%  Similarity=0.195  Sum_probs=64.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCcc-ee-EeecCCchhhh-------cCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSE-VA-GYMGNDQLGQA-------LEDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~~-v~-~~~~~~d~~~a-------~~~aD   98 (209)
                      ++++|+||+|++|.+++..|++.|.  +|+++|+++. .....++........ +. ++...++.+++       +...|
T Consensus         9 k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   86 (260)
T PRK12823          9 KVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRID   86 (260)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCCe
Confidence            5899999999999999999999998  9999999642 111222322111100 01 11111112222       34689


Q ss_pred             EEEEcCCCCC--CC--CCCh---hHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 028437           99 VVIIPAGVPR--KP--GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        99 ~Vi~~ag~~~--~~--g~~r---~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ++|++||...  .+  ..+.   ...+..|+..    ++.+.+.+.+.. .++++++|.
T Consensus        87 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~~sS  144 (260)
T PRK12823         87 VLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQG-GGAIVNVSS  144 (260)
T ss_pred             EEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEcC
Confidence            9999998532  11  1122   2234555543    445555555433 346666654

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.99  E-value=2.3e-05  Score=64.04  Aligned_cols=113  Identities=19%  Similarity=0.189  Sum_probs=68.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC-CCCccee-EeecCCchhhhc---CCCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-NTRSEVA-GYMGNDQLGQAL---EDSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~-~~~~~v~-~~~~~~d~~~a~---~~aD~Vi~~  103 (209)
                      ++++|+||+|++|.+++..|++.|+  +|+++++++...  .++... ... .+. ++...+++++++   ...|+||++
T Consensus        10 ~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~~~~~-~~~~D~~~~~~v~~~~~~~~~~d~vi~~   84 (245)
T PRK07060         10 KSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAAL--DRLAGETGCE-PLRLDVGDDAAIRAALAAAGAFDGLVNC   84 (245)
T ss_pred             CEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHHhCCe-EEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence            5899999999999999999999998  999999864211  111111 000 011 111111233333   357999999


Q ss_pred             CCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhC----CCeEEEEecC
Q 028437          104 AGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC----PNAIVNMISN  146 (209)
Q Consensus       104 ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~----p~~~viv~sn  146 (209)
                      +|......   .+   ..+.+..|+.....+++.+.+..    ...+++++|.
T Consensus        85 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  137 (245)
T PRK07060         85 AGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS  137 (245)
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence            98753211   12   22345677777777777665532    2356777764

>PRK06128 oxidoreductase; Provisional

Probab=97.99  E-value=9.2e-05  Score=63.07  Aligned_cols=114  Identities=22%  Similarity=0.232  Sum_probs=70.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc----hhHHHhhcCCCCCcceeEe----ecCCchhh-------h
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGY----MGNDQLGQ-------A   93 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~----~~~~~dl~~~~~~~~v~~~----~~~~d~~~-------a   93 (209)
                      ++|+|+||+|.+|.+++..|++.|.  +|++.+++..    ......+.....  ++..+    ...++.++       .
T Consensus        56 k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~  131 (300)
T PRK06128         56 RKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEGR--KAVALPGDLKDEAFCRQLVERAVKE  131 (300)
T ss_pred             CEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcCC--eEEEEecCCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999999998  8888776431    111122222111  11111    01112222       2


Q ss_pred             cCCCCEEEEcCCCCCCC----CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           94 LEDSDVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        94 ~~~aD~Vi~~ag~~~~~----g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      +...|++|++||.....    ..+   ....+..|+.....+++.+.++- +...+|++|.
T Consensus       132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS  192 (300)
T PRK06128        132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS  192 (300)
T ss_pred             hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence            34689999999864211    112   34467888888888888887653 3457777654

>PRK12744 short chain dehydrogenase; Provisional

Probab=97.98  E-value=0.00031  Score=58.15  Aligned_cols=112  Identities=13%  Similarity=0.190  Sum_probs=63.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chh----HHHhhcCCCCCcceeEe----ecCCchhhh-----
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPG----VAADVGHINTRSEVAGY----MGNDQLGQA-----   93 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~----~~~dl~~~~~~~~v~~~----~~~~d~~~a-----   93 (209)
                      ++++|+||+|.+|.+++..|++.|.  ++++++++.  ...    ...++.....  ++..+    ...+++++.     
T Consensus         9 k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~   84 (257)
T PRK12744          9 KVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYNSAASKADAEETVAAVKAAGA--KAVAFQADLTTAAAVEKLFDDAK   84 (257)
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--cEEEEecCCccchHHHHHHHHHHHHhCC--cEEEEecCcCCHHHHHHHHHHHH
Confidence            5899999999999999999999998  877776532  111    1122221111  11111    111122222     


Q ss_pred             --cCCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe
Q 028437           94 --LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI  144 (209)
Q Consensus        94 --~~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~  144 (209)
                        +...|++|++||.....   ..+   ....+..|+.....+++.+.+.. +.+.++++
T Consensus        85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~  144 (257)
T PRK12744         85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTL  144 (257)
T ss_pred             HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEE
Confidence              24679999999874211   112   23456678777766777666543 33444444

>PRK08589 short chain dehydrogenase; Validated

Probab=97.98  E-value=0.00021  Score=59.91  Aligned_cols=115  Identities=17%  Similarity=0.210  Sum_probs=65.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCcc-ee-EeecCCchhh-------hcCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSE-VA-GYMGNDQLGQ-------ALEDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~~-v~-~~~~~~d~~~-------a~~~aD   98 (209)
                      ++++|+||+|.+|..++..|++.|.  +|+++++++. .....++.+...... +. ++...++.++       .+...|
T Consensus         7 k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id   84 (272)
T PRK08589          7 KVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRVD   84 (272)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCcC
Confidence            4899999999999999999999998  9999998731 112223332211100 10 0111112222       234579


Q ss_pred             EEEEcCCCCCCCC----CCh---hHHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCC
Q 028437           99 VVIIPAGVPRKPG----MTR---DDLFNINAGIVK----DLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        99 ~Vi~~ag~~~~~g----~~r---~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~snP  147 (209)
                      ++|++||.....+    .+.   ...+..|+....    .+.+.+.+.  .+.++++|..
T Consensus        85 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~  142 (272)
T PRK08589         85 VLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSF  142 (272)
T ss_pred             EEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCch
Confidence            9999998753211    122   223455655444    444444432  3677777654

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.97  E-value=4.6e-05  Score=57.42  Aligned_cols=97  Identities=25%  Similarity=0.350  Sum_probs=55.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      .+||.|||+ |.+|.+|+..|.+.|+  +|..+-... .....++......  ..    ..++++.++++|++|+++  |
T Consensus        10 ~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~~~--~~----~~~~~~~~~~aDlv~iav--p   77 (127)
T PF10727_consen   10 RLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFIGA--GA----ILDLEEILRDADLVFIAV--P   77 (127)
T ss_dssp             --EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC--TT-----------TTGGGCC-SEEEE-S---
T ss_pred             ccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-ccccccccccccc--cc----ccccccccccCCEEEEEe--c
Confidence            369999999 9999999999999999  887765432 1122222222111  11    124567889999999995  2


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhh--C-CCeEEEEecCCCCC
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKY--C-PNAIVNMISNPVNS  150 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~--~-p~~~viv~snP~~~  150 (209)
                         +           +.+.++++++..+  . |+..++-.|...++
T Consensus        78 ---D-----------daI~~va~~La~~~~~~~g~iVvHtSGa~~~  109 (127)
T PF10727_consen   78 ---D-----------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGS  109 (127)
T ss_dssp             ---C-----------CHHHHHHHHHHCC--S-TT-EEEES-SS--G
T ss_pred             ---h-----------HHHHHHHHHHHHhccCCCCcEEEECCCCChH
Confidence               1           2346777888766  2 55566666665443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.97  E-value=8.5e-05  Score=64.24  Aligned_cols=116  Identities=16%  Similarity=0.207  Sum_probs=67.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeE--eecCCc-------hhhhcCC-
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAG--YMGNDQ-------LGQALED-   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~--~~~~~d-------~~~a~~~-   96 (209)
                      ..++|+||+|.+|.+++..|+++|.  +|+++++++.  +....++........+..  .+-+++       +.+.+.+ 
T Consensus        54 ~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~  131 (320)
T PLN02780         54 SWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL  131 (320)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence            5899999999999999999999998  9999999752  222233332110011111  111111       2233343 


Q ss_pred             -CCEEEEcCCCCCC---C--CCCh---hHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           97 -SDVVIIPAGVPRK---P--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        97 -aD~Vi~~ag~~~~---~--g~~r---~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                       .|++|+.||....   +  ..+.   .+.+..|+.....+.+.+...   ...+.++++|.
T Consensus       132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS  193 (320)
T PLN02780        132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGS  193 (320)
T ss_pred             CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence             5599999987531   1  1222   235667776666555554332   23456777764

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.97  E-value=3.3e-05  Score=57.43  Aligned_cols=72  Identities=25%  Similarity=0.362  Sum_probs=45.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHH-HhhcCC-CCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-ADVGHI-NTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~-~dl~~~-~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ||+|+||+|++|+.++..|.....+.-+.++++....++. .+.... .....+...  ..+ .+.+.++|+||.+.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVE--DAD-PEELSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEE--ETS-GHHHTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEe--ecc-hhHhhcCCEEEecC
Confidence            7999999999999999999997767667777775422221 111111 111122221  123 46679999999995

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=97.96  E-value=0.00015  Score=60.08  Aligned_cols=114  Identities=20%  Similarity=0.244  Sum_probs=67.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee----cCCchhhh-------cCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQA-------LEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~a-------~~~a   97 (209)
                      +.++|+|++|.+|.+++..|++.|.  +|+++|+........++.....  .+..+.    ..++.++.       +...
T Consensus        11 k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   86 (253)
T PRK08993         11 KVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALGR--RFLSLTADLRKIDGIPALLERAVAEFGHI   86 (253)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4799999999999999999999998  9998887542222222322110  111110    11122222       2368


Q ss_pred             CEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHh----hCCCeEEEEecC
Q 028437           98 DVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAK----YCPNAIVNMISN  146 (209)
Q Consensus        98 D~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~----~~p~~~viv~sn  146 (209)
                      |++|++||.....   ..+   ....+..|+.....+.+.+.+    ..+.+.++++|.
T Consensus        87 D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS  145 (253)
T PRK08993         87 DILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS  145 (253)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence            9999999875311   112   334566777766655555443    234567777664

>PRK06701 short chain dehydrogenase; Provisional

Probab=97.96  E-value=0.00012  Score=62.17  Aligned_cols=114  Identities=14%  Similarity=0.126  Sum_probs=71.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch---hHHHhhcCCCCCcceeEee----cCCchhhhc-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYM----GNDQLGQAL-------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~---~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------   94 (209)
                      ++|+|+||+|.+|++++..|++.|.  +|++++++...   .....+....  .++..+.    ..+++++.+       
T Consensus        47 k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~  122 (290)
T PRK06701         47 KVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVREL  122 (290)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999998  99999886421   1122222211  1111110    111222222       


Q ss_pred             CCCCEEEEcCCCCCCC----CCC---hhHHHHHHHHHHHHHHHHHHhh-CCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~----g~~---r~~~~~~N~~~~~~i~~~i~~~-~p~~~viv~sn  146 (209)
                      ...|+||++||.....    ..+   ....+..|+.....+++.+.+. .+.+.+|++|.
T Consensus       123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS  182 (290)
T PRK06701        123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS  182 (290)
T ss_pred             CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence            3579999999864211    112   2345778888888888887764 24456777764

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.96  E-value=0.00014  Score=60.45  Aligned_cols=118  Identities=19%  Similarity=0.193  Sum_probs=68.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEecCCch---hHHHhhcCCCCCcceeEe--e--cCCch----hh
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTP---GVAADVGHINTRSEVAGY--M--GNDQL----GQ   92 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g-~~~ev~l~D~~~~~---~~~~dl~~~~~~~~v~~~--~--~~~d~----~~   92 (209)
                      ..+.++|+|+||+|.+|.+++..|+++| .  +|+++++++..   ....++..... .++..+  .  ..++.    ++
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~   81 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDA   81 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHH
Confidence            3456789999999999999999999885 7  99999987532   12233332211 011111  1  11121    22


Q ss_pred             hc--CCCCEEEEcCCCCCCCCC---Ch---hHHHHHHHHHH----HHHHHHHHhhCCCeEEEEecC
Q 028437           93 AL--EDSDVVIIPAGVPRKPGM---TR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        93 a~--~~aD~Vi~~ag~~~~~g~---~r---~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +.  .+.|++|+++|.......   +.   .+.+..|+...    +.+.+.+++.+ .+.++++|.
T Consensus        82 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~-~~~iv~isS  146 (253)
T PRK07904         82 AFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQG-FGQIIAMSS  146 (253)
T ss_pred             HHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcC-CceEEEEec
Confidence            22  378999999887532111   11   12466676544    44666666544 356666654

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.96  E-value=0.00015  Score=59.00  Aligned_cols=107  Identities=20%  Similarity=0.191  Sum_probs=66.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee-cC----CchhhhcCCCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GN----DQLGQALEDSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~-~~----~d~~~a~~~aD~Vi~~  103 (209)
                      ++++|+||+|.+|.+++..|+++|+  +|+++++++...    .. .    .+..+. +-    ....+.+...|++|++
T Consensus         6 k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~----~~-~----~~~~~~~D~~~~~~~~~~~~~~id~lv~~   74 (235)
T PRK06550          6 KTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPD----LS-G----NFHFLQLDLSDDLEPLFDWVPSVDILCNT   74 (235)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccc----cC-C----cEEEEECChHHHHHHHHHhhCCCCEEEEC
Confidence            4899999999999999999999998  999999864211    00 0    111110 00    1122335678999999


Q ss_pred             CCCCC--CC--CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437          104 AGVPR--KP--GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus       104 ag~~~--~~--g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      +|...  .+  ..+   ....+..|+.....+.+.+...   .+.+.++++|.
T Consensus        75 ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  127 (235)
T PRK06550         75 AGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCS  127 (235)
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            98642  11  112   2335677877766666665432   23456766664

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.96  E-value=0.00015  Score=60.04  Aligned_cols=118  Identities=14%  Similarity=0.163  Sum_probs=76.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCCcceeEeecC-------CchhhhcCCCCE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN-------DQLGQALEDSDV   99 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~~~v~~~~~~-------~d~~~a~~~aD~   99 (209)
                      +-++|+|||+.+|..++..|.+.|+  +|++..|+.  ++..+.++.+........++++.       ..+.+.+...|+
T Consensus         7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            3578999999999999999999999  999999974  34455556631111111111111       123455678999


Q ss_pred             EEEcCCCCCCCC------CChhHHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCCCC
Q 028437          100 VIIPAGVPRKPG------MTRDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNPVN  149 (209)
Q Consensus       100 Vi~~ag~~~~~g------~~r~~~~~~N~~~~~~i~~~----i~~~~p~~~viv~snP~~  149 (209)
                      +|+.||......      .+...++..|++.+.+...+    |.+. ..+.||++|.-.+
T Consensus        85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r-~~G~IiN~~SiAG  143 (246)
T COG4221          85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER-KSGHIINLGSIAG  143 (246)
T ss_pred             EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc-CCceEEEeccccc
Confidence            999999864311      13456788898776655544    4433 3557888875443

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.95  E-value=0.00019  Score=58.84  Aligned_cols=114  Identities=18%  Similarity=0.207  Sum_probs=65.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-ecCCch--hHHHhhcCCCCCcceeEe----ecCCchhhhc-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANTP--GVAADVGHINTRSEVAGY----MGNDQLGQAL-------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~-D~~~~~--~~~~dl~~~~~~~~v~~~----~~~~d~~~a~-------   94 (209)
                      ++++|+||+|++|..++..|++.|.  +|++. +++..+  ....++.....  .+..+    ....++++++       
T Consensus         5 ~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (250)
T PRK08063          5 KVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSRKAAEETAEEIEALGR--KALAVKANVGDVEKIKEMFAQIDEEF   80 (250)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999998  87664 554321  11222322111  11111    1111222333       


Q ss_pred             CCCCEEEEcCCCCCC-C--CCChh---HHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRK-P--GMTRD---DLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~-~--g~~r~---~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ...|+||+.+|.... +  ..+..   ..+..|......+++++.++   .+.++++++|.
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS  141 (250)
T PRK08063         81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSS  141 (250)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            357999999986421 1  11222   23456776666666666553   23457777764

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=97.95  E-value=0.00025  Score=59.06  Aligned_cols=116  Identities=17%  Similarity=0.208  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a-------~~   95 (209)
                      ++++|+||+|.+|.+++..|++.|+  +|++.++++..  ....++.....  ++..+.    ...+++++       +.
T Consensus        11 k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~   86 (265)
T PRK07097         11 KIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELGI--EAHGYVCDVTDEDGVQAMVSQIEKEVG   86 (265)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            4799999999999999999999998  99999886421  11222322111  111110    01112222       34


Q ss_pred             CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCC
Q 028437           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP~  148 (209)
                      ..|++|+++|.....   ..+   ....+..|+.....+.+.+.++   ...+.++++|...
T Consensus        87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~  148 (265)
T PRK07097         87 VIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMM  148 (265)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCcc
Confidence            579999999874311   112   2233456665544444443321   3456777777543

>TIGR02415 23BDH acetoin reductases

Probab=97.95  E-value=0.00021  Score=58.76  Aligned_cols=113  Identities=22%  Similarity=0.308  Sum_probs=65.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEe----ecCCchhhh-------cCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGY----MGNDQLGQA-------LED   96 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~----~~~~d~~~a-------~~~   96 (209)
                      +++|+|++|.+|..++..|++.|.  +|++++++...  ....++.....  .+..+    ...++++++       +..
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~~~   77 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAGG--KAVAYKLDVSDKDQVFSAIDQAAEKFGG   77 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999999998  99999986421  11222322111  11111    111122222       345


Q ss_pred             CCEEEEcCCCCCC-C--CCChh---HHHHHHHHHHH----HHHHHHHhhCCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRK-P--GMTRD---DLFNINAGIVK----DLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~-~--g~~r~---~~~~~N~~~~~----~i~~~i~~~~p~~~viv~sn  146 (209)
                      .|+||+++|.... +  ..+..   ..+..|+....    .+.+.+++.+....++++|.
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS  137 (254)
T TIGR02415        78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAAS  137 (254)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence            7999999987431 1  22222   34566665444    44455554444466776653

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK07578 short chain dehydrogenase; Provisional

Probab=97.94  E-value=0.00011  Score=58.57  Aligned_cols=102  Identities=18%  Similarity=0.176  Sum_probs=63.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhh---hcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQ---ALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~---a~~~aD~Vi~~ag  105 (209)
                      |+++|+||+|.+|..++..|.++ .  +|++.++++. ....|+.+.            +++++   .+...|++|+++|
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~------------~~~~~~~~~~~~id~lv~~ag   64 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDP------------ASIRALFEKVGKVDAVVSAAG   64 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCCh------------HHHHHHHHhcCCCCEEEECCC
Confidence            48999999999999999999988 5  9999988531 011122221            11222   2347899999998


Q ss_pred             CCCCC---CCChh---HHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437          106 VPRKP---GMTRD---DLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus       106 ~~~~~---g~~r~---~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      .....   ..+..   ..+..|+....++.+.+.++- +.+.++++|.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss  112 (199)
T PRK07578         65 KVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSG  112 (199)
T ss_pred             CCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcc
Confidence            64311   12222   335667776666776665442 3456666653

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.92  E-value=0.00023  Score=58.67  Aligned_cols=113  Identities=16%  Similarity=0.175  Sum_probs=65.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEe----ecCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGY----MGNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~----~~~~d~~~a-------~~   95 (209)
                      ++++|+||+|.+|..++..|++.|.  +|++.++++..  ....++.+...  ++..+    ...++.+++       +.
T Consensus         7 k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T PRK07478          7 KVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEGG--EAVALAGDVRDEAYAKALVALAVERFG   82 (254)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            5899999999999999999999998  99999986421  12223332211  11111    111122222       23


Q ss_pred             CCCEEEEcCCCCC--CC--CCC---hhHHHHHHHHHH----HHHHHHHHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPR--KP--GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~--~~--g~~---r~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ..|++|++||...  .+  ..+   ....+..|+...    +.+.+.+.+. ..+.++++|.
T Consensus        83 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~-~~~~iv~~sS  143 (254)
T PRK07478         83 GLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR-GGGSLIFTST  143 (254)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEec
Confidence            6899999998632  11  122   234467777544    4445555443 3456666654

>PRK08226 short chain dehydrogenase; Provisional

Probab=97.92  E-value=8.2e-05  Score=61.68  Aligned_cols=113  Identities=23%  Similarity=0.272  Sum_probs=66.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCcceeEee----cCCchhhh-------cCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM----GNDQLGQA-------LED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~~v~~~~----~~~d~~~a-------~~~   96 (209)
                      ++++|+||+|.+|+.++..|++.|.  +|++++++.. .....++.....  ++..+.    ...+++++       +..
T Consensus         7 ~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~~~   82 (263)
T PRK08226          7 KTALITGALQGIGEGIARVFARHGA--NLILLDISPEIEKLADELCGRGH--RCTAVVADVRDPASVAAAIKRAKEKEGR   82 (263)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhCC--ceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5899999999999999999999998  9999998642 111222221110  111111    01122222       335


Q ss_pred             CCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEec
Q 028437           97 SDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMIS  145 (209)
Q Consensus        97 aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~s  145 (209)
                      .|+||+++|.....   ..+   ..+.+..|+.....+.+.+.++   ...+.++++|
T Consensus        83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~is  140 (263)
T PRK08226         83 IDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMS  140 (263)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence            79999999864211   111   2334667877777666665543   2334566664

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.92  E-value=0.00016  Score=59.99  Aligned_cols=114  Identities=25%  Similarity=0.266  Sum_probs=68.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhh------cC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQA------LE   95 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a------~~   95 (209)
                      .++|+|+||+|++|..++..|+++|.  +|+++++++..  ....++...   ..+..+.    ..++.++.      +.
T Consensus         5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~~~~   79 (263)
T PRK09072          5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPYP---GRHRWVVADLTSEAGREAVLARAREMG   79 (263)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHhcC
Confidence            35899999999999999999999998  99999997421  111222111   1111111    01111111      35


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ..|++|+++|......   .+   ..+.+..|+.....+.+.+.++   .+.+.++++|.
T Consensus        80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS  139 (263)
T PRK09072         80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGS  139 (263)
T ss_pred             CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence            6799999998753211   11   2345667877777777666543   22355666654

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.92  E-value=0.00018  Score=63.77  Aligned_cols=60  Identities=20%  Similarity=0.415  Sum_probs=47.6

Q ss_pred             ccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEE
Q 028437           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (209)
Q Consensus        21 ~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~V  100 (209)
                      |-..++.+++|+|+|+.|.+|..++..|.+.|+  +|.++|++..                      ++.++++++||+|
T Consensus        91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlV  146 (374)
T PRK11199         91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMV  146 (374)
T ss_pred             ccccCcccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEE
Confidence            333445568999999669999999999999999  9999998420                      1245678899999


Q ss_pred             EEcC
Q 028437          101 IIPA  104 (209)
Q Consensus       101 i~~a  104 (209)
                      |+++
T Consensus       147 ilav  150 (374)
T PRK11199        147 IVSV  150 (374)
T ss_pred             EEeC
Confidence            9995

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.91  E-value=0.00023  Score=59.42  Aligned_cols=115  Identities=11%  Similarity=0.170  Sum_probs=66.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeE----eecCCchhhhc------CC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAG----YMGNDQLGQAL------ED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~----~~~~~d~~~a~------~~   96 (209)
                      +.++|+||+|.+|..++..|++.|.  +|++.++++..  ....++.... ..++..    +...++.++.+      ..
T Consensus         9 k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          9 KLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            4789999999999999999999998  99999997421  1222232210 111111    11111232333      35


Q ss_pred             CCEEEEcCCCCCCC---CCChh---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEecCC
Q 028437           97 SDVVIIPAGVPRKP---GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        97 aD~Vi~~ag~~~~~---g~~r~---~~~~~N~----~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      .|++|+++|.....   ..+..   ..+..|+    ..++.+.+.+++. ..+.+|++|..
T Consensus        86 iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~-~~g~Ii~isS~  145 (263)
T PRK08339         86 PDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERK-GFGRIIYSTSV  145 (263)
T ss_pred             CcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcCc
Confidence            79999999875321   12222   3344554    3456666666553 34567777543

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.91  E-value=0.00021  Score=64.59  Aligned_cols=66  Identities=24%  Similarity=0.372  Sum_probs=47.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||+|+||+|.+|..++..|...|+  +|.++|+++....  ++....   .+..   +.+.+++++++|+||+++
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~~--~~a~~~---gv~~---~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKGK--EVAKEL---GVEY---ANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHHH--HHHHHc---CCee---ccCHHHHhccCCEEEEec
Confidence            5899999669999999999999998  9999999753211  111110   0111   235677889999999986

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.90  E-value=0.00016  Score=62.77  Aligned_cols=115  Identities=21%  Similarity=0.154  Sum_probs=66.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcce--eEeecCCchhhh-------cCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEV--AGYMGNDQLGQA-------LEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v--~~~~~~~d~~~a-------~~~a   97 (209)
                      ++|+|+||+|.+|..++..|++.|.  +|+++++++.  .....++........+  .++...++.+++       +...
T Consensus         8 k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   85 (330)
T PRK06139          8 AVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRI   85 (330)
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            5899999999999999999999998  9999999752  1122233222111111  011111122222       2468


Q ss_pred             CEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHH----HHhhCCCeEEEEecC
Q 028437           98 DVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (209)
Q Consensus        98 D~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~----i~~~~p~~~viv~sn  146 (209)
                      |++|++||.....   ..+   ..+.+..|+.....+.+.    +.+. ..+.+|+++.
T Consensus        86 D~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~-~~g~iV~isS  143 (330)
T PRK06139         86 DVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQ-GHGIFINMIS  143 (330)
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHc-CCCEEEEEcC
Confidence            9999999875321   112   223466676655554444    4433 3456666653

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=97.90  E-value=0.00013  Score=60.58  Aligned_cols=74  Identities=15%  Similarity=0.101  Sum_probs=53.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      |+|+|+||||++|++++..|+..|+  +|+..-+++......  . ........++.....+..+++|.|.++++.+..
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~--~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~   74 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAAL--A-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLL   74 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHhh--c-CCcEEEEeccCCHhHHHHHhccccEEEEEeccc
Confidence            5899999999999999999999998  999998875322222  2 211112222333446778899999999987644

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.90  E-value=0.00016  Score=62.05  Aligned_cols=95  Identities=20%  Similarity=0.204  Sum_probs=60.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      |||+|+|. |.+|.+++..|.+.|+  +|.++|+++..  ...+......    ......++.+.++++|+|+++...  
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g~~----~~~s~~~~~~~~~~~dvIi~~vp~--   69 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDRTT----GVANLRELSQRLSAPRVVWVMVPH--   69 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcCCc----ccCCHHHHHhhcCCCCEEEEEcCc--
Confidence            58999999 9999999999999999  99999997532  2223322111    010012334456789999998421  


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 028437          109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (209)
Q Consensus       109 ~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~  148 (209)
                                    ..++++++.+.... ++..+|..||..
T Consensus        70 --------------~~~~~v~~~l~~~l~~g~ivid~st~~   96 (298)
T TIGR00872        70 --------------GIVDAVLEELAPTLEKGDIVIDGGNSY   96 (298)
T ss_pred             --------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                          12344444554443 556677777654

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK07985 oxidoreductase; Provisional

Probab=97.89  E-value=0.00058  Score=58.09  Aligned_cols=115  Identities=18%  Similarity=0.139  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh---HHHh-hcCCCCCcceeEee-cCCc---h-------hhh
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAAD-VGHINTRSEVAGYM-GNDQ---L-------GQA   93 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~---~~~d-l~~~~~~~~v~~~~-~~~d---~-------~~a   93 (209)
                      ++++|+||+|.+|.+++..|++.|.  +|++.+++....   ...+ +.....  .+..+. +.++   +       .+.
T Consensus        50 k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~  125 (294)
T PRK07985         50 RKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEECGR--KAVLLPGDLSDEKFARSLVHEAHKA  125 (294)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHcCC--eEEEEEccCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999999998  999887643111   1111 111110  111110 0111   1       123


Q ss_pred             cCCCCEEEEcCCCCCC--C--CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437           94 LEDSDVVIIPAGVPRK--P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus        94 ~~~aD~Vi~~ag~~~~--~--g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                      +...|++|+.+|....  +  ..+   ....+..|+.....+++.+.++- ..+.+|++|..
T Consensus       126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~  187 (294)
T PRK07985        126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSI  187 (294)
T ss_pred             hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCc
Confidence            4567999999986321  1  122   23456788887777777766542 34677777654

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=97.88  E-value=7.6e-05  Score=60.90  Aligned_cols=114  Identities=20%  Similarity=0.242  Sum_probs=66.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-h--HHHhhcCCCCCcceeEee----cCCchhhh-------c
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-G--VAADVGHINTRSEVAGYM----GNDQLGQA-------L   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~--~~~dl~~~~~~~~v~~~~----~~~d~~~a-------~   94 (209)
                      .+++|+|++|.+|++++..|+++|.  +|++.+++... .  ....+....  .++..+.    ..++++++       +
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSGNDCAKDWFEEYGFTE--DQVRLKELDVTDTEECAEALAEIEEEE   78 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhhccC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            3899999999999999999999998  99999987421 1  111111111  1111111    11122222       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHH----HHHhhCCCeEEEEecCC
Q 028437           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCS----AIAKYCPNAIVNMISNP  147 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~----~i~~~~p~~~viv~snP  147 (209)
                      ...|++|+++|.....   ..+   ....+..|+.....+.+    .+++. +..+++++|..
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~  140 (245)
T PRK12824         79 GPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISSV  140 (245)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECCh
Confidence            3589999999865311   111   23345677776666544    44433 45577777654

>PRK08628 short chain dehydrogenase; Provisional

Probab=97.87  E-value=0.00032  Score=57.97  Aligned_cols=114  Identities=17%  Similarity=0.141  Sum_probs=67.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCCCcceeEe----ecCCchhhhc-------CC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGY----MGNDQLGQAL-------ED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~~~v~~~----~~~~d~~~a~-------~~   96 (209)
                      .+|+|+||+|.+|..++..|++.|.  ++++.++++... ...++.....  .+..+    ...+++++++       ..
T Consensus         8 ~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (258)
T PRK08628          8 KVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQP--RAEFVQVDLTDDAQCRDAVEQTVAKFGR   83 (258)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            4899999999999999999999998  899998865321 1222322111  11111    1111233333       36


Q ss_pred             CCEEEEcCCCCCCCCC-----ChhHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g~-----~r~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~sn  146 (209)
                      .|+||+++|.......     +..+.+..|+.....+.+.+.++.  ....++++|.
T Consensus        84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss  140 (258)
T PRK08628         84 IDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISS  140 (258)
T ss_pred             CCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECC
Confidence            7999999986432221     123456677776666666554432  2345666653

>PRK06523 short chain dehydrogenase; Provisional

Probab=97.87  E-value=4.2e-05  Score=63.29  Aligned_cols=111  Identities=15%  Similarity=0.207  Sum_probs=63.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCC--CCcceeEeec----CCchhhhcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--TRSEVAGYMG----NDQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~--~~~~v~~~~~----~~d~~~a~~~aD~Vi~  102 (209)
                      ++|+|+||+|.+|+.++..|++.|.  +|+++++++...    .....  ...++.....    .....+.+...|+||+
T Consensus        10 k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   83 (260)
T PRK06523         10 KRALVTGGTKGIGAATVARLLEAGA--RVVTTARSRPDD----LPEGVEFVAADLTTAEGCAAVARAVLERLGGVDILVH   83 (260)
T ss_pred             CEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCChhhh----cCCceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            5899999999999999999999998  999999864211    11100  0001110000    0012233457899999


Q ss_pred             cCCCCCCC-C----CC---hhHHHHHHHHHHHHH----HHHHHhhCCCeEEEEecC
Q 028437          103 PAGVPRKP-G----MT---RDDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       103 ~ag~~~~~-g----~~---r~~~~~~N~~~~~~i----~~~i~~~~p~~~viv~sn  146 (209)
                      ++|....+ +    .+   ....+..|+.....+    .+.+++.. .+.+|++|.
T Consensus        84 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~ii~isS  138 (260)
T PRK06523         84 VLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARG-SGVIIHVTS  138 (260)
T ss_pred             CCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence            99854211 1    11   233456676655444    45554432 356777664

>PRK08703 short chain dehydrogenase; Provisional

Probab=97.87  E-value=0.0016  Score=53.24  Aligned_cols=116  Identities=20%  Similarity=0.221  Sum_probs=65.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCC-Cc-cee-Eeec--CCchhh-------hc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINT-RS-EVA-GYMG--NDQLGQ-------AL   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~-~~-~v~-~~~~--~~d~~~-------a~   94 (209)
                      ++|+|+||+|++|.+++..|++.|.  +|+++++++..  ....++..... .. .+. ++..  .+++++       .+
T Consensus         7 k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~~   84 (239)
T PRK08703          7 KTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEAT   84 (239)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHHh
Confidence            5899999999999999999999998  99999997521  11222221110 00 011 0100  011111       22


Q ss_pred             -CCCCEEEEcCCCCC--CC--CCCh---hHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           95 -EDSDVVIIPAGVPR--KP--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        95 -~~aD~Vi~~ag~~~--~~--g~~r---~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                       ...|.||+++|...  .+  ..+.   .+.+..|+.....+.+.+.+.   .+.+.+++++.
T Consensus        85 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss  147 (239)
T PRK08703         85 QGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGE  147 (239)
T ss_pred             CCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence             46799999998642  11  1122   234567776655555544432   23456666654

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.86  E-value=0.00014  Score=59.72  Aligned_cols=116  Identities=14%  Similarity=0.094  Sum_probs=64.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCccee--EeecCCch-------hhhcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVA--GYMGNDQL-------GQALED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~--~~~~~~d~-------~~a~~~   96 (209)
                      .+|+|+||+|++|++++..|+++|+  ++++..+...   ......+..........  ++...+++       .+.+..
T Consensus         7 ~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK06077          7 KVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGV   84 (252)
T ss_pred             cEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence            5899999999999999999999998  8777654321   11111222111000000  01111112       222346


Q ss_pred             CCEEEEcCCCCCCCC---CCh---hHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g---~~r---~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      .|+||+++|......   .+.   .+.+..|+.....+++.+.++- ....++++|.
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS  141 (252)
T PRK06077         85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIAS  141 (252)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcc
Confidence            899999998643211   122   2345667666666666655442 2356666654

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.86  E-value=8.4e-05  Score=60.36  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=31.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ++++|+||+|.+|+.++..|++.|.  +|+++++++
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   35 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP   35 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            4799999999999999999999998  999999975

>PRK05867 short chain dehydrogenase; Provisional

Probab=97.86  E-value=0.00029  Score=58.14  Aligned_cols=113  Identities=21%  Similarity=0.219  Sum_probs=65.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEe----ecCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGY----MGNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~----~~~~d~~~a-------~~   95 (209)
                      ++++|+||+|.+|..++..|++.|.  +|++.+++...  ....++.....  ++..+    ...++.+++       +.
T Consensus        10 k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T PRK05867         10 KRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSGG--KVVPVCCDVSQHQQVTSMLDQVTAELG   85 (253)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5799999999999999999999999  99999987421  12222322111  11111    111122222       34


Q ss_pred             CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHH----hhCCCeEEEEec
Q 028437           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIA----KYCPNAIVNMIS  145 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~----~~~p~~~viv~s  145 (209)
                      ..|++|+++|.....   ..+   ..+.+..|+.....+.+.+.    +....+.++++|
T Consensus        86 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s  145 (253)
T PRK05867         86 GIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA  145 (253)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            789999999865321   112   22345667665555555543    322235566664

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.86  E-value=0.00013  Score=63.69  Aligned_cols=70  Identities=29%  Similarity=0.423  Sum_probs=49.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ++|+|+||+|++|+.++..|...+-+.+++++++++...  ...++...    .+      .++++++.++|+||++++.
T Consensus       156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~----~i------~~l~~~l~~aDiVv~~ts~  225 (340)
T PRK14982        156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG----KI------LSLEEALPEADIVVWVASM  225 (340)
T ss_pred             CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc----cH------HhHHHHHccCCEEEECCcC
Confidence            489999999999999999998642234899999864211  11222211    11      2467889999999999987


Q ss_pred             CC
Q 028437          107 PR  108 (209)
Q Consensus       107 ~~  108 (209)
                      +.
T Consensus       226 ~~  227 (340)
T PRK14982        226 PK  227 (340)
T ss_pred             Cc
Confidence            64

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.85  E-value=0.00014  Score=60.03  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=31.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ++|+|+||+|++|++++..|++.|.  +|+++++++
T Consensus        10 k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~   43 (258)
T PRK06949         10 KVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV   43 (258)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5899999999999999999999998  999999874

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=97.85  E-value=0.00024  Score=57.88  Aligned_cols=75  Identities=17%  Similarity=0.221  Sum_probs=45.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCc---hhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQ---LGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d---~~~a~~~aD~Vi~~a  104 (209)
                      |+|+|+||+|.+|+.++..|++++....+.+.+++....    ....... .+. ++...++   +.+.+.+.|++|+++
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~~~~~~-~~~~Dls~~~~~~~~~~~~~~id~li~~a   75 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQHDNVQ-WHALDVTDEAEIKQLSEQFTQLDWLINCV   75 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----cccCceE-EEEecCCCHHHHHHHHHhcCCCCEEEECC
Confidence            589999999999999999999885422666666643211    1111000 000 0100111   233466889999999


Q ss_pred             CCCC
Q 028437          105 GVPR  108 (209)
Q Consensus       105 g~~~  108 (209)
                      |...
T Consensus        76 G~~~   79 (235)
T PRK09009         76 GMLH   79 (235)
T ss_pred             cccc
Confidence            9753

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.85  E-value=0.00012  Score=60.43  Aligned_cols=71  Identities=25%  Similarity=0.462  Sum_probs=47.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHh-hcC-CCCCcceeEee-cCCchhhh-cCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAAD-VGH-INTRSEVAGYM-GNDQLGQA-LEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~d-l~~-~~~~~~v~~~~-~~~d~~~a-~~~aD~Vi~~a  104 (209)
                      |+|+|+|+ |.+|+++|..|.+.|+  +|+++|+++..  ..+ +.+ .... -+.... ..+-++++ +.++|+++.+.
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~--~~~~~~~~~~~~-~v~gd~t~~~~L~~agi~~aD~vva~t   74 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEER--VEEFLADELDTH-VVIGDATDEDVLEEAGIDDADAVVAAT   74 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHH--HHHHhhhhcceE-EEEecCCCHHHHHhcCCCcCCEEEEee
Confidence            68999999 9999999999999999  99999998632  222 121 1111 111110 11124444 78899999986


Q ss_pred             C
Q 028437          105 G  105 (209)
Q Consensus       105 g  105 (209)
                      |
T Consensus        75 ~   75 (225)
T COG0569          75 G   75 (225)
T ss_pred             C
Confidence            4

>PRK07035 short chain dehydrogenase; Provisional

Probab=97.85  E-value=0.00015  Score=59.73  Aligned_cols=116  Identities=15%  Similarity=0.121  Sum_probs=66.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcc-eeE-eecCCchhhh-------cCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSE-VAG-YMGNDQLGQA-------LEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~-v~~-~~~~~d~~~a-------~~~a   97 (209)
                      ++|+|+||+|++|.+++..|++.|.  +|++++++..  .....++.+...... +.. +....+.+++       +...
T Consensus         9 k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   86 (252)
T PRK07035          9 KIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRL   86 (252)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999998  9999998642  112222322111000 100 1011122222       3458


Q ss_pred             CEEEEcCCCCC--CC--CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           98 DVVIIPAGVPR--KP--GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        98 D~Vi~~ag~~~--~~--g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      |++|+++|...  .+  ..+   ....+..|+.....+.+.+.++   .....++++|.
T Consensus        87 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  145 (252)
T PRK07035         87 DILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVAS  145 (252)
T ss_pred             CEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECc
Confidence            99999998532  11  122   2234667776666555555433   23356666654

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.84  E-value=0.00047  Score=58.50  Aligned_cols=99  Identities=17%  Similarity=0.144  Sum_probs=61.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCc--cEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~--~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |+||+|+|+ |.+|..++..|.+.+..  .+|.+++++... ....+.... . .+..   +.+..++++++|+||++..
T Consensus         1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~~-~-~~~~---~~~~~e~~~~aDvVilavp   73 (277)
T PRK06928          1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDKY-P-TVEL---ADNEAEIFTKCDHSFICVP   73 (277)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHHc-C-CeEE---eCCHHHHHhhCCEEEEecC
Confidence            468999999 99999999999988721  389999986421 112222111 0 1111   2355677889999999853


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~  149 (209)
                      .                ..+.++++.+..+- ++..+|.+.+-..
T Consensus        74 p----------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~  102 (277)
T PRK06928         74 P----------------LAVLPLLKDCAPVLTPDRHVVSIAAGVS  102 (277)
T ss_pred             H----------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            1                22345555555443 4556666666655

>PRK07677 short chain dehydrogenase; Provisional

Probab=97.84  E-value=0.00019  Score=59.19  Aligned_cols=114  Identities=11%  Similarity=0.139  Sum_probs=67.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee----cCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM----GNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~----~~~d~~~a-------~~   95 (209)
                      ++++|+||+|.+|.+++..|++.|.  .|++.+++..  .....++....  ..+..+.    ..++.+++       +.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999998  9999998742  11222232211  1111111    11122222       24


Q ss_pred             CCCEEEEcCCCCCC-C--CCCh---hHHHHHHHHHHHHHHHHHHh----hCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCSAIAK----YCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~-~--g~~r---~~~~~~N~~~~~~i~~~i~~----~~p~~~viv~sn  146 (209)
                      ..|++|+++|.... +  ..+.   ...+..|+.....+.+.+.+    ....+.++++|.
T Consensus        78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS  138 (252)
T PRK07677         78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVA  138 (252)
T ss_pred             CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcC
Confidence            67999999985321 1  1222   34567777666666666643    233467777764

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.84  E-value=0.00013  Score=62.01  Aligned_cols=113  Identities=25%  Similarity=0.271  Sum_probs=68.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeE----eecCCchhh-------hcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAG----YMGNDQLGQ-------ALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~----~~~~~d~~~-------a~~   95 (209)
                      ++++|+||+|.+|..++..|++.|.  +|++.++++..  ....++....   .+..    +...++.++       .+.
T Consensus        10 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (296)
T PRK05872         10 KVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGGDD---RVLTVVADVTDLAAMQAAAEEAVERFG   84 (296)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCCC---cEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999998  99999997421  1222332211   1111    111111222       235


Q ss_pred             CCCEEEEcCCCCCCC---CCCh---hHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~r---~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~sn  146 (209)
                      ..|+||+++|.....   ..+.   .+.+..|+.....+++.+..+-  ..+.++++|.
T Consensus        85 ~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS  143 (296)
T PRK05872         85 GIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSS  143 (296)
T ss_pred             CCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            689999999974311   1122   3346678777777666654431  2456777764

>PRK06483 dihydromonapterin reductase; Provisional

Probab=97.83  E-value=0.00014  Score=59.39  Aligned_cols=34  Identities=18%  Similarity=0.166  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ++++|+||+|.+|.+++..|++.|.  +|++.++++
T Consensus         3 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   36 (236)
T PRK06483          3 APILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH   36 (236)
T ss_pred             ceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            4799999999999999999999999  999999875

>PRK09242 tropinone reductase; Provisional

Probab=97.83  E-value=0.00035  Score=57.74  Aligned_cols=116  Identities=14%  Similarity=0.153  Sum_probs=67.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCc-------hhhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQ-------LGQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d-------~~~a~~   95 (209)
                      ++++|+||+|.+|..++..|++.|.  +|++++++...  ....++.......++..+.    ..++       ..+.+.
T Consensus        10 k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   87 (257)
T PRK09242         10 QTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD   87 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999998  99999987421  1122232210011111111    0111       123345


Q ss_pred             CCCEEEEcCCCCCC-C--CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~-~--g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ..|+||+++|.... +  ..+   ....+..|+.....+++.+.++   .+.+.++++|.
T Consensus        88 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS  147 (257)
T PRK09242         88 GLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGS  147 (257)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECc
Confidence            78999999986321 1  112   2234566777666665555432   33456777654

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.83  E-value=0.0003  Score=58.17  Aligned_cols=70  Identities=10%  Similarity=0.202  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC--ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~--~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +.+||+|+|+ |.+|..++..++..+.  ..++++++++.. ....++.+.. .  +..   +.+.++.++++|+||++.
T Consensus         3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~-~--~~~---~~~~~~~~~~~DiViiav   74 (245)
T PRK07634          3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY-N--VST---TTDWKQHVTSVDTIVLAM   74 (245)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc-C--cEE---eCChHHHHhcCCEEEEec
Confidence            4579999999 9999999999988763  334777876321 1122222211 1  111   235677889999999985

>PRK08017 oxidoreductase; Provisional

Probab=97.82  E-value=0.00014  Score=59.88  Aligned_cols=113  Identities=18%  Similarity=0.141  Sum_probs=63.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhc--------CCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL--------EDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~--------~~aD~V  100 (209)
                      ++|+|+||+|++|.+++..|++.|+  +|++++++....  .++.+.......-++...+++++++        ...|.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~i   78 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY--RVLAACRKPDDV--ARMNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGL   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHh--HHHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            3799999999999999999999998  999998864211  1111111110000011011111111        356899


Q ss_pred             EEcCCCCCC-C--CCC---hhHHHHHHHHHHHH----HHHHHHhhCCCeEEEEecC
Q 028437          101 IIPAGVPRK-P--GMT---RDDLFNINAGIVKD----LCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       101 i~~ag~~~~-~--g~~---r~~~~~~N~~~~~~----i~~~i~~~~p~~~viv~sn  146 (209)
                      ++.+|.... +  ..+   ..+.+..|+.....    +++.+.+.. ...++++|.
T Consensus        79 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~~ss  133 (256)
T PRK08017         79 FNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHG-EGRIVMTSS  133 (256)
T ss_pred             EECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CCEEEEEcC
Confidence            999886431 1  112   22456677765544    455555443 345666664

>PRK12743 oxidoreductase; Provisional

Probab=97.81  E-value=0.0008  Score=55.67  Aligned_cols=114  Identities=18%  Similarity=0.166  Sum_probs=66.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC-ch--hHHHhhcCCCCCcceeEe----ecCCchhhh-------c
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP--GVAADVGHINTRSEVAGY----MGNDQLGQA-------L   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~-~~--~~~~dl~~~~~~~~v~~~----~~~~d~~~a-------~   94 (209)
                      .+++|+||+|.+|.+++..|++.|+  +|++.++.. ..  ....++.....  .+..+    ...++++++       +
T Consensus         3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHGV--RAEIRQLDLSDLPEGAQALDKLIQRL   78 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3799999999999999999999998  888876532 11  11222222111  11111    111112222       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh----CCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~----~p~~~viv~sn  146 (209)
                      ...|.+|+++|.....   ..+   ..+.+..|+.....+.+.+.++    ...++++++|.
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS  140 (256)
T PRK12743         79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITS  140 (256)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence            4579999999875321   112   2345667777666666655443    23467777764

>PRK05855 short chain dehydrogenase; Validated

Probab=97.81  E-value=0.00015  Score=66.56  Aligned_cols=117  Identities=18%  Similarity=0.206  Sum_probs=68.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeE--eecCCchhhh-------cCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAG--YMGNDQLGQA-------LED   96 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~--~~~~~d~~~a-------~~~   96 (209)
                      .++++|+||+|++|.+++..|++.|.  +|++.+++...  ....++...........  +...++.++.       +..
T Consensus       315 ~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~  392 (582)
T PRK05855        315 GKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGV  392 (582)
T ss_pred             CCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            36899999999999999999999999  99999997421  12222322111000000  1011112222       235


Q ss_pred             CCEEEEcCCCCCCC---CCCh---hHHHHHHHHHHHHHHHH----HHhhCCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~---g~~r---~~~~~~N~~~~~~i~~~----i~~~~p~~~viv~sn  146 (209)
                      .|++|++||.....   ..+.   ...+..|+....++.+.    +.+....+.+|++|.
T Consensus       393 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS  452 (582)
T PRK05855        393 PDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVAS  452 (582)
T ss_pred             CcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence            79999999975321   1122   23456776655555544    444444567777764

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=97.81  E-value=0.00013  Score=60.53  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .++++|+||+|.+|.+++..|++.|+  +|+++++++
T Consensus         6 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (263)
T PRK06200          6 GQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA   40 (263)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999999  999999974

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=97.80  E-value=0.001  Score=55.09  Aligned_cols=114  Identities=15%  Similarity=0.206  Sum_probs=65.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeE----eecCCchhhh-------c
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAG----YMGNDQLGQA-------L   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~----~~~~~d~~~a-------~   94 (209)
                      ++++|+||+|.+|..++..|++.|.  .+++..++..   .....++.....  .+..    +...+++.+.       +
T Consensus         8 k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~   83 (261)
T PRK08936          8 KVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAGG--EAIAVKGDVTVESDVVNLIQTAVKEF   83 (261)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcCC--eEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999998  8888777431   112222322111  1111    1111112222       3


Q ss_pred             CCCCEEEEcCCCCCCC---CCCh---hHHHHHHHHHH----HHHHHHHHhhCCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~---g~~r---~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ...|++|+.+|.....   ..+.   ...+..|+...    +.+++.+.+....+.++++|.
T Consensus        84 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS  145 (261)
T PRK08936         84 GTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS  145 (261)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence            3579999999874321   1122   23456675443    445555555544567777754

>PRK06114 short chain dehydrogenase; Provisional

Probab=97.80  E-value=0.00028  Score=58.31  Aligned_cols=116  Identities=23%  Similarity=0.300  Sum_probs=65.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCc-cee-EeecCCchhhh-------cCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRS-EVA-GYMGNDQLGQA-------LED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~-~v~-~~~~~~d~~~a-------~~~   96 (209)
                      +.++|+|++|.+|.+++..|++.|+  +|++.+++..   .....++.+..... .+. ++...++++++       +..
T Consensus         9 k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   86 (254)
T PRK06114          9 QVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELGA   86 (254)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4899999999999999999999998  9999998642   11222333221110 011 01111122222       334


Q ss_pred             CCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      .|++|+++|......   .+   ....+..|+.....+.+.+.+.   ...+.++++|.
T Consensus        87 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  145 (254)
T PRK06114         87 LTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIAS  145 (254)
T ss_pred             CCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECc
Confidence            699999998753211   12   2334566766665544443322   23456666643

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=97.80  E-value=0.0006  Score=56.33  Aligned_cols=117  Identities=16%  Similarity=0.249  Sum_probs=68.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeE--eecCCchhh-------hcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAG--YMGNDQLGQ-------ALED   96 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~--~~~~~d~~~-------a~~~   96 (209)
                      .++|+|+||+|.+|.+++..|++.|.  ++++.+++...  ....++.+.........  +...++.++       .+..
T Consensus        11 ~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   88 (255)
T PRK06113         11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGK   88 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            36899999999999999999999998  99999886421  11222322111100000  111112222       2346


Q ss_pred             CCEEEEcCCCCCCC--CCChh---HHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKP--GMTRD---DLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~--g~~r~---~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      .|++|+++|.....  ..+..   +.+..|+.....+.+.+..+   ...+.++++|.
T Consensus        89 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  146 (255)
T PRK06113         89 VDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITS  146 (255)
T ss_pred             CCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            79999999864211  12222   33677887777777776532   23346666654

>PRK06198 short chain dehydrogenase; Provisional

Probab=97.79  E-value=0.00073  Score=55.78  Aligned_cols=114  Identities=14%  Similarity=0.170  Sum_probs=65.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccE-EEEEecCCch--hHHHhhcCCCCCcceeE----eecCCchhhh-------c
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSR-LALYDIANTP--GVAADVGHINTRSEVAG----YMGNDQLGQA-------L   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~e-v~l~D~~~~~--~~~~dl~~~~~~~~v~~----~~~~~d~~~a-------~   94 (209)
                      ++|+|+||+|.+|..++..|++.|.  + |+++++++..  ....++....  ..+..    +...++++++       +
T Consensus         7 k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (260)
T PRK06198          7 KVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEALG--AKAVFVQADLSDVEDCRRVVAAADEAF   82 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999999998  7 9999986421  1122232211  11111    1111112222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---CCh---hHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~r---~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~sn  146 (209)
                      .+.|++|+++|......   .+.   ...+..|+.....+.+.+    .+....+.++++|.
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss  144 (260)
T PRK06198         83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS  144 (260)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence            46899999998753211   122   234566776655555444    33322355666654

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.79  E-value=0.00027  Score=59.25  Aligned_cols=66  Identities=20%  Similarity=0.274  Sum_probs=46.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC--ccEEEEE-ecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALY-DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~--~~ev~l~-D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||+++|. |.+|..++..|++.|+  ..+|+++ |+++..  ...+....    +..   ..+..++++++|+||++.
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~g----~~~---~~~~~e~~~~aDvVil~v   69 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSLG----VKT---AASNTEVVKSSDVIILAV   69 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHcC----CEE---eCChHHHHhcCCEEEEEE
Confidence            68999998 9999999999999886  3478888 775422  22232221    111   134567788999999996

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.79  E-value=0.00022  Score=60.49  Aligned_cols=65  Identities=22%  Similarity=0.254  Sum_probs=45.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||+|+|. |.+|..++..|.+.|+  +|.++|+++..  ...+.....   +..  .+++. +++++||+||++.
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~--~~~a~~~g~---~~~--~~~~~-~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRREST--CERAIERGL---VDE--ASTDL-SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHCCC---ccc--ccCCH-hHhcCCCEEEEcC
Confidence            58999998 9999999999999998  99999997521  111111110   000  12233 5688999999995

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=97.79  E-value=0.00027  Score=57.95  Aligned_cols=114  Identities=16%  Similarity=0.153  Sum_probs=62.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec-CCc--hhHHHhhcCCCCCcceeEe----ecCCchhhh-------c
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANT--PGVAADVGHINTRSEVAGY----MGNDQLGQA-------L   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~-~~~--~~~~~dl~~~~~~~~v~~~----~~~~d~~~a-------~   94 (209)
                      ++|+|+||+|++|+.++..|++.|.  +|++.+. ++.  .....++.....  ++..+    ...++++++       +
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGW--SVGINYARDAAAAEETADAVRAAGG--RACVVAGDVANEADVIAMFDAVQSAF   78 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCC--cEEEEEeccCCHHHHHHHHHHHHHhc
Confidence            4899999999999999999999998  8877654 321  112222322111  11111    111122222       3


Q ss_pred             CCCCEEEEcCCCCCCC----CCCh---hHHHHHHHHHHHHHHHHHHhh----C--CCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKP----GMTR---DDLFNINAGIVKDLCSAIAKY----C--PNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~----g~~r---~~~~~~N~~~~~~i~~~i~~~----~--p~~~viv~sn  146 (209)
                      ...|++|+++|.....    ..+.   ...+..|+.....+++++.+.    .  +.+.+|++|.
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS  143 (248)
T PRK06947         79 GRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSS  143 (248)
T ss_pred             CCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence            4689999999864211    1122   234566766655554433322    1  1356777664

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=97.79  E-value=0.00036  Score=58.37  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ++++|+||+|.+|++++..|++.|.  +|++++++.
T Consensus        11 k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~   44 (278)
T PRK08277         11 KVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQ   44 (278)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5799999999999999999999999  999999964

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.78  E-value=0.00024  Score=59.54  Aligned_cols=96  Identities=15%  Similarity=0.232  Sum_probs=59.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ||||+|+|+ |.+|..++..|.+.+. ..+|.++|+++..  ...+.+.. .  +..   +.+.++.++++|+||++...
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~-g--~~~---~~~~~~~~~~advVil~v~~   72 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY-G--VRA---ATDNQEAAQEADVVVLAVKP   72 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc-C--Cee---cCChHHHHhcCCEEEEEcCH
Confidence            579999999 9999999999998872 1289999997522  12222210 0  111   23456678899999998521


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                                      ..++++++.+..+. +..++.++|...
T Consensus        73 ----------------~~~~~v~~~l~~~~-~~~vvs~~~gi~   98 (267)
T PRK11880         73 ----------------QVMEEVLSELKGQL-DKLVVSIAAGVT   98 (267)
T ss_pred             ----------------HHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence                            12344445554433 345666666554

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.78  E-value=0.00021  Score=60.90  Aligned_cols=65  Identities=23%  Similarity=0.301  Sum_probs=48.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +|||+|+|. |.+|..++..|.+.|+  +|.++|+++..  ...+....    ...   .+++++++++||+||++.
T Consensus         2 ~~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~--~~~~~~~g----~~~---~~~~~e~~~~~d~vi~~v   66 (296)
T PRK11559          2 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEA--VAEVIAAG----AET---ASTAKAVAEQCDVIITML   66 (296)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            368999999 9999999999999998  99999997532  12222211    111   235677889999999995

>PRK06123 short chain dehydrogenase; Provisional

Probab=97.78  E-value=0.00044  Score=56.61  Aligned_cols=116  Identities=17%  Similarity=0.153  Sum_probs=65.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcce-e-EeecCCchhhhc-------CCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEV-A-GYMGNDQLGQAL-------EDS   97 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v-~-~~~~~~d~~~a~-------~~a   97 (209)
                      .++|+||+|++|++++..|++.|.  +|++.+++..   .....++......... . ++...+++++++       ...
T Consensus         4 ~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (248)
T PRK06123          4 VMIITGASRGIGAATALLAAERGY--AVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRL   81 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC--eEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence            699999999999999999999998  7887765321   1111223221111001 1 011112233333       367


Q ss_pred             CEEEEcCCCCCCC----CCC---hhHHHHHHHHHHHHHHHHHHhhC------CCeEEEEecCC
Q 028437           98 DVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKYC------PNAIVNMISNP  147 (209)
Q Consensus        98 D~Vi~~ag~~~~~----g~~---r~~~~~~N~~~~~~i~~~i~~~~------p~~~viv~snP  147 (209)
                      |+||+++|.....    ..+   ..+.+..|+.....+.+.+.+.-      ..+.++++|..
T Consensus        82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~  144 (248)
T PRK06123         82 DALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSM  144 (248)
T ss_pred             CEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECch
Confidence            9999999875321    112   22456778877666655554331      13567776654

>PRK06484 short chain dehydrogenase; Validated

Probab=97.77  E-value=0.00047  Score=63.02  Aligned_cols=117  Identities=21%  Similarity=0.261  Sum_probs=71.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCccee-EeecCCchhhh-------cCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVA-GYMGNDQLGQA-------LEDS   97 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~a   97 (209)
                      .++++|+||+|.+|..++..|+++|.  +|++.++++...  ...++.... . .+. ++...++.++.       +...
T Consensus       269 ~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~-~~~~D~~~~~~~~~~~~~~~~~~g~i  344 (520)
T PRK06484        269 PRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGDEH-L-SVQADITDEAAVESAFAQIQARWGRL  344 (520)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCce-e-EEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            36899999999999999999999998  999999974211  111221110 0 010 01111122222       2457


Q ss_pred             CEEEEcCCCCCC--C--CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 028437           98 DVVIIPAGVPRK--P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (209)
Q Consensus        98 D~Vi~~ag~~~~--~--g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~  148 (209)
                      |++|++||....  +  ..+   ....+..|+.....+.+.+..+- ..+.++++|...
T Consensus       345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~  403 (520)
T PRK06484        345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIA  403 (520)
T ss_pred             CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchh
Confidence            999999997521  1  122   23456778877777776665543 346788887543

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.75  E-value=0.00027  Score=57.81  Aligned_cols=34  Identities=26%  Similarity=0.528  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .+++|+|++|.+|..++..|+++|.  +|+++++++
T Consensus         6 ~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~   39 (253)
T PRK08217          6 KVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ   39 (253)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5899999999999999999999998  899999875

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.74  E-value=0.0002  Score=60.96  Aligned_cols=64  Identities=22%  Similarity=0.333  Sum_probs=47.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ||+|+|. |.+|..++..|+..|+  +|+++|+++.  ....+.....    ..   .++.++++++||+||++..
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~--~~~~~~~~g~----~~---~~~~~~~~~~aDivi~~vp   64 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPE--VADELLAAGA----VT---AETARQVTEQADVIFTMVP   64 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHH--HHHHHHHCCC----cc---cCCHHHHHhcCCEEEEecC
Confidence            5999999 9999999999999999  9999999752  2222332221    00   2356788999999999953

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK07775 short chain dehydrogenase; Provisional

Probab=97.74  E-value=0.0006  Score=57.17  Aligned_cols=114  Identities=17%  Similarity=0.167  Sum_probs=65.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a-------~~   95 (209)
                      +.++|+||+|++|.+++..|+++|.  +|++.+++...  ....++....  ..+..+.    ..++++++       +.
T Consensus        11 ~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   86 (274)
T PRK07775         11 RPALVAGASSGIGAATAIELAAAGF--PVALGARRVEKCEELVDKIRADG--GEAVAFPLDVTDPDSVKSFVAQAEEALG   86 (274)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999998  99999885421  1111122111  0111111    11122222       34


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ..|.+|+++|......   .+   ..+.+..|+.....+.+.+.+.   ...+.++++|.
T Consensus        87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS  146 (274)
T PRK07775         87 EIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGS  146 (274)
T ss_pred             CCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECC
Confidence            6799999998653211   12   2234567777666666665432   22345666654

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.73  E-value=0.00035  Score=62.90  Aligned_cols=116  Identities=20%  Similarity=0.259  Sum_probs=70.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcC-CCCCccee-EeecCCchhhh-------cCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-INTRSEVA-GYMGNDQLGQA-------LEDSD   98 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~-~~~~~~v~-~~~~~~d~~~a-------~~~aD   98 (209)
                      .++++|+||+|.+|..++..|++.|.  +|+++|+........++.. .... .+. ++...++.++.       +...|
T Consensus       210 g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~-~~~~Dv~~~~~~~~~~~~~~~~~g~id  286 (450)
T PRK08261        210 GKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGT-ALALDITAPDAPARIAEHLAERHGGLD  286 (450)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCe-EEEEeCCCHHHHHHHHHHHHHhCCCCC
Confidence            35899999999999999999999998  9999988532211112111 1100 011 11111112221       23689


Q ss_pred             EEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           99 VVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        99 ~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      +||+++|.....   ..+   ....+..|+.....+.+.+.+.   .+.++++++|.
T Consensus       287 ~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS  343 (450)
T PRK08261        287 IVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS  343 (450)
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence            999999975421   112   2345678888888888887652   24467777763

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.73  E-value=0.00031  Score=59.93  Aligned_cols=66  Identities=21%  Similarity=0.267  Sum_probs=50.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      +||++||- |.+|+.++..|++.|+  +++++|+++.+. ...+......    .   ..+..++.+++|+||.+..
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga~----~---a~s~~eaa~~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGAT----V---AASPAEAAAEADVVITMLP   66 (286)
T ss_pred             CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCCc----c---cCCHHHHHHhCCEEEEecC
Confidence            58999998 9999999999999999  999999986432 2233332211    1   1345789999999999854

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=97.72  E-value=0.00049  Score=56.34  Aligned_cols=116  Identities=17%  Similarity=0.137  Sum_probs=63.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec-CCc--hhHHHhhcCCCCCcceeE--eecCCchhhh-------cCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANT--PGVAADVGHINTRSEVAG--YMGNDQLGQA-------LED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~-~~~--~~~~~dl~~~~~~~~v~~--~~~~~d~~~a-------~~~   96 (209)
                      +.++|+|++|++|..++..|++.|.  ++++... +..  .....++...........  +...++++++       +..
T Consensus         4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (246)
T PRK12938          4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE   81 (246)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999998  8877543 221  111222222111100000  1111122222       346


Q ss_pred             CCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      .|+||+++|.....   ..+   ....+..|+.....+.+.+.+.   .+..+++++|.
T Consensus        82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS  140 (246)
T PRK12938         82 IDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISS  140 (246)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEec
Confidence            89999999875321   112   2344667776644444444332   23356777664

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.72  E-value=0.00023  Score=57.93  Aligned_cols=34  Identities=21%  Similarity=0.418  Sum_probs=31.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .+|+|+||+|++|+.++..|++.|.  +|++.++++
T Consensus         6 ~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~   39 (238)
T PRK05786          6 KKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE   39 (238)
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4899999999999999999999999  999999965

>PRK07680 late competence protein ComER; Validated

Probab=97.72  E-value=0.00032  Score=59.20  Aligned_cols=97  Identities=15%  Similarity=0.214  Sum_probs=62.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC--ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~--~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      |||+|+|+ |.+|..++..|.+.|+  ..+|.++|+++..  ...+.+.. . .+..   ..+.+++++++|+||++.- 
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~~-~-g~~~---~~~~~~~~~~aDiVilav~-   71 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKERY-P-GIHV---AKTIEEVISQSDLIFICVK-   71 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHHc-C-CeEE---ECCHHHHHHhCCEEEEecC-
Confidence            58999998 9999999999998884  2479999997522  12222210 0 1121   2345677889999999961 


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~  149 (209)
                      +               ..+.++++.+..+- ++..++-++++..
T Consensus        72 p---------------~~~~~vl~~l~~~l~~~~~iis~~ag~~  100 (273)
T PRK07680         72 P---------------LDIYPLLQKLAPHLTDEHCLVSITSPIS  100 (273)
T ss_pred             H---------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            1               11244445554443 4567778888765

>PRK08324 short chain dehydrogenase; Validated

Probab=97.72  E-value=0.00045  Score=65.69  Aligned_cols=113  Identities=21%  Similarity=0.264  Sum_probs=67.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeE----eecCCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAG----YMGNDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~----~~~~~d~~~a~-------~   95 (209)
                      ++|+|+||+|++|..++..|++.|.  +|+++|++...  ....++....   .+..    +...+++++++       .
T Consensus       423 k~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~~---~v~~v~~Dvtd~~~v~~~~~~~~~~~g  497 (681)
T PRK08324        423 KVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGPD---RALGVACDVTDEAAVQAAFEEAALAFG  497 (681)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhccC---cEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999998  99999997521  1122232210   1111    11111222223       3


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHH----hhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIA----KYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~----~~~p~~~viv~sn  146 (209)
                      +.|+||+++|......   .+   ....+..|+.....+++.+.    +....+.++++|.
T Consensus       498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS  558 (681)
T PRK08324        498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS  558 (681)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence            7899999998653211   12   22345667766666655443    3322356776654

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=97.71  E-value=0.00064  Score=55.41  Aligned_cols=114  Identities=13%  Similarity=0.139  Sum_probs=65.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEee----cCCchhhh-------cCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM----GNDQLGQA-------LED   96 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~----~~~d~~~a-------~~~   96 (209)
                      |+|+||+|++|.+++..|+++|.  +|+++++...   .....++.+...  ++..+.    ..++.+++       +..
T Consensus         1 vlItGas~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGF--EICVHYHSGRSDAESVVSAIQAQGG--NARLLQFDVADRVACRTLLEADIAEHGA   76 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcCC--eEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            57999999999999999999998  8888876431   111222322211  111111    11122222       235


Q ss_pred             CCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHH----hhCCCeEEEEecCCC
Q 028437           97 SDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIA----KYCPNAIVNMISNPV  148 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~----~~~p~~~viv~snP~  148 (209)
                      .|.+|+++|......   .+   ....+..|+.....+.+.+.    +..+.+.++++|...
T Consensus        77 i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~  138 (239)
T TIGR01831        77 YYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVS  138 (239)
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchh
Confidence            699999998653221   12   33456778777766665431    223456777776543

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.70  E-value=0.00034  Score=61.54  Aligned_cols=68  Identities=21%  Similarity=0.265  Sum_probs=47.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ++|+|+|. |.+|..++..|...|+  ++.++++++.......-......   ..  .++++++++++||+||+++
T Consensus         1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~~~---~~--~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFGVI---DE--LAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCCCC---cc--cccCHHHHhcCCCEEEEeC
Confidence            37999999 9999999999999998  88889887532221111111110   00  1235678889999999995

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.69  E-value=0.00031  Score=65.89  Aligned_cols=140  Identities=12%  Similarity=0.110  Sum_probs=84.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchh-hhcCCCCEEEEcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLG-QALEDSDVVIIPAGV  106 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~-~a~~~aD~Vi~~ag~  106 (209)
                      .++|.|+|. |.+|+.++..|.+.|+  +++++|.|+.  ....+.+...+.-..+.+..+-++ .-+++||.+|.+.+.
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~--~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d  474 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDIS--AVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNE  474 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHH--HHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCC
Confidence            368999999 9999999999999999  9999999863  222333332211111111111122 236789999998421


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEe-cCCCCCcHHHHHHHHHHhCCCCCCcEEEEehhhHHHHHHHH
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY  185 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~-snP~~~~~~i~~~~~~~~~~~p~~~vig~~~lds~r~~~~l  185 (209)
                                 -+.|    ..++..+++.+|+.+++.- .|+.+      .+.+++.+   .+.++--+...+.++-...
T Consensus       475 -----------~~~n----~~i~~~~r~~~p~~~IiaRa~~~~~------~~~L~~~G---a~~vv~e~~es~l~l~~~~  530 (601)
T PRK03659        475 -----------PEDT----MKIVELCQQHFPHLHILARARGRVE------AHELLQAG---VTQFSRETFSSALELGRKT  530 (601)
T ss_pred             -----------HHHH----HHHHHHHHHHCCCCeEEEEeCCHHH------HHHHHhCC---CCEEEccHHHHHHHHHHHH
Confidence                       1334    3466667788898766544 45433      34455543   4444433444445555566


Q ss_pred             HHHcCCCCCCe
Q 028437          186 AGKANVNVAGL  196 (209)
Q Consensus       186 a~~l~v~~~~v  196 (209)
                      -..+|++++++
T Consensus       531 L~~lg~~~~~~  541 (601)
T PRK03659        531 LVSLGMHPHQA  541 (601)
T ss_pred             HHHcCCCHHHH
Confidence            67777777654

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.69  E-value=0.00066  Score=58.08  Aligned_cols=101  Identities=20%  Similarity=0.241  Sum_probs=60.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEee----cCCchhhh------c
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM----GNDQLGQA------L   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~----~~~d~~~a------~   94 (209)
                      .++++|+||+|.+|..++..|++.|.  +|++.|+...   .....++....  ..+..+.    ..++.++.      +
T Consensus        12 ~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dv~d~~~~~~~~~~~~~~   87 (306)
T PRK07792         12 GKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAAG--AKAVAVAGDISQRATADELVATAVGL   87 (306)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            35899999999999999999999998  9999987431   12223333211  1111111    01112222      3


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHH
Q 028437           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI  132 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i  132 (209)
                      ...|++|++||......   .+   ....+..|+.....+.+.+
T Consensus        88 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~  131 (306)
T PRK07792         88 GGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNA  131 (306)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHH
Confidence            46899999999764321   22   2335667777666666554

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.68  E-value=0.0008  Score=57.64  Aligned_cols=64  Identities=14%  Similarity=0.330  Sum_probs=45.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCC---CCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~---aD~Vi~~a  104 (209)
                      |||+++|. |.+|++++..|.+.|+  +|+++|+++..  ...+.+..    ...   ..+.++.+++   +|+|+++.
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~v   67 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEA--VDVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMV   67 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEe
Confidence            58999999 9999999999999998  99999997532  22232221    111   2345566555   68999985

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=97.68  E-value=0.0033  Score=52.38  Aligned_cols=32  Identities=28%  Similarity=0.336  Sum_probs=28.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      .++|+||+|.+|.+++..|+++|.  +|++.+++
T Consensus         3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~~   34 (267)
T TIGR02685         3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYHR   34 (267)
T ss_pred             EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcCC
Confidence            689999999999999999999998  89887653

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=97.68  E-value=0.00077  Score=54.79  Aligned_cols=115  Identities=19%  Similarity=0.196  Sum_probs=63.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEec-CCch--hHHHhhcCCCCCcceeE--eecCCch-------hhhcCCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTP--GVAADVGHINTRSEVAG--YMGNDQL-------GQALEDS   97 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~-~~~~--~~~~dl~~~~~~~~v~~--~~~~~d~-------~~a~~~a   97 (209)
                      .++|+||+|.+|..++..|++.|+  ++++..+ ++..  ....++........+..  +....++       .+.+...
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (242)
T TIGR01829         2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPI   79 (242)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999998  8888877 3211  11112211110101111  1001112       2224568


Q ss_pred             CEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHH----HHHHHhhCCCeEEEEecCC
Q 028437           98 DVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDL----CSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        98 D~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i----~~~i~~~~p~~~viv~snP  147 (209)
                      |.||+++|.....   ..+   ..+.+..|+.....+    .+.+++. +...++++|..
T Consensus        80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~iss~  138 (242)
T TIGR01829        80 DVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRER-GWGRIINISSV  138 (242)
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcch
Confidence            9999999865311   111   233456677655544    4444433 34567777643

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK06940 short chain dehydrogenase; Provisional

Probab=97.68  E-value=0.00042  Score=58.32  Aligned_cols=112  Identities=17%  Similarity=0.204  Sum_probs=65.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcc-ee-EeecCCchhhhc------CCCCE
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSE-VA-GYMGNDQLGQAL------EDSDV   99 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~-v~-~~~~~~d~~~a~------~~aD~   99 (209)
                      .++|+|| |.+|.+++..|. .|.  +|++.|+++..  ....++........ +. ++...++.++++      ...|+
T Consensus         4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~   79 (275)
T PRK06940          4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTG   79 (275)
T ss_pred             EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence            5678887 899999999996 787  99999997421  12223322111100 11 111111222222      45899


Q ss_pred             EEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      +|++||... ...+..+.+..|+.....+++.+.+.- +.+.+++++.
T Consensus        80 li~nAG~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS  126 (275)
T PRK06940         80 LVHTAGVSP-SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIAS  126 (275)
T ss_pred             EEECCCcCC-chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence            999999753 223455678889888777777766542 2334455543

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.67  E-value=0.00026  Score=64.49  Aligned_cols=98  Identities=15%  Similarity=0.202  Sum_probs=61.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC--CcceeEeecCCchhhhcC---CCCEEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--RSEVAGYMGNDQLGQALE---DSDVVII  102 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~---~aD~Vi~  102 (209)
                      +.+|+|+|. |.+|.+++..|+..|+  +|.++|+++..  ..++.....  ...+..   ..+++++++   ++|+|++
T Consensus         1 ~~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil   72 (470)
T PTZ00142          1 MSDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEK--TEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVIL   72 (470)
T ss_pred             CCEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEE
Confidence            358999999 9999999999999999  99999997532  222222100  001222   245666665   5898888


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCC
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPV  148 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~-~p~~~viv~snP~  148 (209)
                      ++-.+               +.++++++.+..+ .++.++|-.||-.
T Consensus        73 ~v~~~---------------~~v~~vi~~l~~~L~~g~iIID~gn~~  104 (470)
T PTZ00142         73 LIKAG---------------EAVDETIDNLLPLLEKGDIIIDGGNEW  104 (470)
T ss_pred             EeCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            84221               2334444444443 3566777777643

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.67  E-value=0.00015  Score=64.32  Aligned_cols=77  Identities=16%  Similarity=0.226  Sum_probs=46.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC-CcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .+++||+|+||||++|..++..|..+... +|.++.++...++.....+... ......+. ..+ .+.++++|+||++.
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~-el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al  112 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDF-EITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL  112 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCC-eEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence            46679999999999999999999888432 8888877532222111111100 00111110 112 23368999999986


Q ss_pred             C
Q 028437          105 G  105 (209)
Q Consensus       105 g  105 (209)
                      +
T Consensus       113 p  113 (381)
T PLN02968        113 P  113 (381)
T ss_pred             C
Confidence            5

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.66  E-value=0.00061  Score=58.49  Aligned_cols=69  Identities=22%  Similarity=0.257  Sum_probs=47.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      +||+|+|+ |.+|..++..|.+.|+..+|.++|+++...  ..+......  ...   ..+.++++++||+||+++.
T Consensus         7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~--~~a~~~g~~--~~~---~~~~~~~~~~aDvViiavp   75 (307)
T PRK07502          7 DRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETR--ARARELGLG--DRV---TTSAAEAVKGADLVILCVP   75 (307)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHH--HHHHhCCCC--cee---cCCHHHHhcCCCEEEECCC
Confidence            69999998 999999999999888544899999975211  111111110  011   1245677899999999964

>PRK07062 short chain dehydrogenase; Provisional

Probab=97.66  E-value=0.0025  Score=52.85  Aligned_cols=115  Identities=14%  Similarity=0.170  Sum_probs=64.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEe----ecCCchh-------hhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGY----MGNDQLG-------QALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~----~~~~d~~-------~a~~   95 (209)
                      +.++|+||+|.+|..++..|++.|.  +|++.++++.  .....++.......++..+    ...++.+       +.+.
T Consensus         9 k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T PRK07062          9 RVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG   86 (265)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999999  9999999752  1122223221101111111    1111121       1234


Q ss_pred             CCCEEEEcCCCCCCC---CCCh---hHHHHHHHH----HHHHHHHHHHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~r---~~~~~~N~~----~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ..|++|++||.....   ..+.   ...+..|+.    .++.+.+.+++. ..+.++++|.
T Consensus        87 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS  146 (265)
T PRK07062         87 GVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRAS-AAASIVCVNS  146 (265)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-CCcEEEEecc
Confidence            679999999875321   1121   223344433    445555555543 3456777654

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=97.65  E-value=0.00056  Score=65.06  Aligned_cols=116  Identities=20%  Similarity=0.225  Sum_probs=65.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeE----eecCCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAG----YMGNDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~----~~~~~d~~~a~-------~   95 (209)
                      ++++|+||+|++|.+++..|++.|.  +|+++|++...  ....++........+..    +....+.++++       .
T Consensus       415 kvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g  492 (676)
T TIGR02632       415 RVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYG  492 (676)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            5899999999999999999999998  99999997421  11122221100001111    11111233333       3


Q ss_pred             CCCEEEEcCCCCCCCC---CCh---hHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG---MTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~r---~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +.|++|++||......   .+.   ...+..|+..    .+.+++.+++....+.++++|.
T Consensus       493 ~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS  553 (676)
T TIGR02632       493 GVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIAS  553 (676)
T ss_pred             CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            6899999999753211   121   1223444443    3455555555443455666654

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.65  E-value=0.00016  Score=61.89  Aligned_cols=64  Identities=19%  Similarity=0.291  Sum_probs=47.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +||+|+|. |.+|..++..|++.|+  +|.++|+++..  ..++.....    ..   ..+..+++++||+||++.
T Consensus         2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g~----~~---~~s~~~~~~~aDvVi~~v   65 (296)
T PRK15461          2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKGA----TP---AASPAQAAAGAEFVITML   65 (296)
T ss_pred             CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcCC----cc---cCCHHHHHhcCCEEEEec
Confidence            48999999 9999999999999999  99999997532  222332211    11   235567889999999985

>PRK07201 short chain dehydrogenase; Provisional

Probab=97.65  E-value=0.00065  Score=63.84  Aligned_cols=115  Identities=14%  Similarity=0.123  Sum_probs=67.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeE----eecCCchhhhc-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAG----YMGNDQLGQAL-------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~----~~~~~d~~~a~-------   94 (209)
                      .++++|+||+|.+|.+++..|++.|.  +|+++++++..  ....++.....  ++..    +...++.++++       
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~  446 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKGG--TAHAYTCDLTDSAAVDHTVKDILAEH  446 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999998  99999997421  11222322111  1111    11112233333       


Q ss_pred             CCCCEEEEcCCCCCCCC--------CChhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPG--------MTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g--------~~r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ...|++|++||......        .+....+..|+.....+.+.+.+.   ...+.++++|.
T Consensus       447 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS  509 (657)
T PRK07201        447 GHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSS  509 (657)
T ss_pred             CCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence            36899999998642111        112334667776655554444322   23456777764

>PLN02256 arogenate dehydrogenase

Probab=97.64  E-value=0.0011  Score=57.01  Aligned_cols=65  Identities=20%  Similarity=0.219  Sum_probs=45.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhc-CCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~-~~aD~Vi~~a  104 (209)
                      ++|||+|+|. |.+|+.++..|.+.|+  +|+.+|++.....+.++   ..    ..   .++.++.+ .++|+||+++
T Consensus        35 ~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~---gv----~~---~~~~~e~~~~~aDvVilav  100 (304)
T PLN02256         35 RKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL---GV----SF---FRDPDDFCEEHPDVVLLCT  100 (304)
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc---CC----ee---eCCHHHHhhCCCCEEEEec
Confidence            3479999998 9999999999998887  99999987522112211   11    11   13455555 4799999985

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.64  E-value=0.00016  Score=63.21  Aligned_cols=73  Identities=19%  Similarity=0.318  Sum_probs=46.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .+|+||+|+||||++|..++..|.++++ ..++..+......++...+..  ....+..   . +. +.++++|+||++.
T Consensus         2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~--~~l~~~~---~-~~-~~~~~vD~vFla~   74 (336)
T PRK05671          2 SQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG--KNLRVRE---V-DS-FDFSQVQLAFFAA   74 (336)
T ss_pred             CCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC--cceEEee---C-Ch-HHhcCCCEEEEcC
Confidence            3458999999999999999999997665 346667755432232222222  1112221   1 22 3368999999986


Q ss_pred             C
Q 028437          105 G  105 (209)
Q Consensus       105 g  105 (209)
                      +
T Consensus        75 p   75 (336)
T PRK05671         75 G   75 (336)
T ss_pred             C
Confidence            4

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.63  E-value=0.00068  Score=54.94  Aligned_cols=33  Identities=30%  Similarity=0.545  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      .||+|+|+ |.+|+.++..|++.|. ++++++|.+
T Consensus        22 ~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D   54 (200)
T TIGR02354        22 ATVAICGL-GGLGSNVAINLARAGI-GKLILVDFD   54 (200)
T ss_pred             CcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            48999999 9999999999999997 589999998

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=97.63  E-value=0.006  Score=50.57  Aligned_cols=32  Identities=16%  Similarity=0.337  Sum_probs=29.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~   62 (209)
                      ++++|+||++.+|.+++..|++.|.  +|++.++
T Consensus         9 k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~   40 (260)
T PRK08416          9 KTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYN   40 (260)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcC
Confidence            5899999999999999999999998  8888765

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=97.62  E-value=0.00067  Score=55.33  Aligned_cols=116  Identities=16%  Similarity=0.157  Sum_probs=61.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-ecCCc--hhHHHhhcCCCCCcc-eeE-eecCCchhhh-------cCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANT--PGVAADVGHINTRSE-VAG-YMGNDQLGQA-------LED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~-D~~~~--~~~~~dl~~~~~~~~-v~~-~~~~~d~~~a-------~~~   96 (209)
                      ..++|+||+|++|+.++..|++.|+  +|.+. ++++.  .....++........ +.. +...++++++       ...
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~   79 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGY--TVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEP   79 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            3689999999999999999999998  88764 44331  111222222110000 000 1111122333       335


Q ss_pred             CCEEEEcCCCCCCC----CCC---hhHHHHHHHHHHHHHHHHHHh----h--CCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAK----Y--CPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~----g~~---r~~~~~~N~~~~~~i~~~i~~----~--~p~~~viv~sn  146 (209)
                      .|+||+++|.....    ..+   ....+..|+.....+++.+.+    .  +..+.++++|.
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS  142 (247)
T PRK09730         80 LAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSS  142 (247)
T ss_pred             CCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence            68999999864211    111   223456676665544443332    2  12345666654

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.61  E-value=0.00088  Score=56.75  Aligned_cols=68  Identities=15%  Similarity=0.276  Sum_probs=46.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC--ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~--~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||+++|+ |.+|.+++..|++.|.  ..+|+++|+++. ....++.... .  +..   +.+..+++++||+||++.
T Consensus         4 mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~-~~~~~l~~~~-g--~~~---~~~~~e~~~~aDvVilav   73 (279)
T PRK07679          4 QNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNE-TRLQELHQKY-G--VKG---THNKKELLTDANILFLAM   73 (279)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCH-HHHHHHHHhc-C--ceE---eCCHHHHHhcCCEEEEEe
Confidence            69999998 9999999999998871  238999988542 1122222211 1  111   234567788999999996

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.60  E-value=0.00097  Score=58.12  Aligned_cols=63  Identities=24%  Similarity=0.387  Sum_probs=48.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      -..++|+|+|. |.+|+.++..|...|.  +|+.+|+++..  ..+.        ...   ..++++++++||+|+++.
T Consensus       144 l~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~--~~~~--------~~~---~~~l~ell~~aDiVil~l  206 (330)
T PRK12480        144 VKNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNK--DLDF--------LTY---KDSVKEAIKDADIISLHV  206 (330)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhH--hhhh--------hhc---cCCHHHHHhcCCEEEEeC
Confidence            34469999999 9999999999999998  99999986421  1111        011   235788999999999985

>PRK07041 short chain dehydrogenase; Provisional

Probab=97.60  E-value=0.00032  Score=56.85  Aligned_cols=108  Identities=17%  Similarity=0.196  Sum_probs=64.8

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeE----eecCCchhhhcC---CCCEEEE
Q 028437           32 AVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAG----YMGNDQLGQALE---DSDVVII  102 (209)
Q Consensus        32 ~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~----~~~~~d~~~a~~---~aD~Vi~  102 (209)
                      +|+||+|++|..++..|++.|.  +|+++++++..  ....++....   .+..    +...++++++++   ..|++|+
T Consensus         1 lItGas~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~id~li~   75 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGA--RVTIASRSRDRLAAAARALGGGA---PVRTAALDITDEAAVDAFFAEAGPFDHVVI   75 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcCC---ceEEEEccCCCHHHHHHHHHhcCCCCEEEE
Confidence            4899999999999999999998  99999997421  1122222111   1111    111123344443   4799999


Q ss_pred             cCCCCCCC---CC---ChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          103 PAGVPRKP---GM---TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       103 ~ag~~~~~---g~---~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      .+|.....   ..   +..+.+..|+.....+.+.. ...+.+.++++|
T Consensus        76 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~-~~~~~g~iv~~s  123 (230)
T PRK07041         76 TAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAA-RIAPGGSLTFVS  123 (230)
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhh-hhcCCeEEEEEC
Confidence            99864321   11   13345677877777777733 233445666665

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.58  E-value=0.00021  Score=61.79  Aligned_cols=111  Identities=14%  Similarity=0.200  Sum_probs=69.3

Q ss_pred             hHHHHHHHHHhCCCccEEEEEecCCch----------hH--HH----hhcCCC-C--------CcceeEeecCCchhhhc
Q 028437           40 IGQPLALLMKLNPLVSRLALYDIANTP----------GV--AA----DVGHIN-T--------RSEVAGYMGNDQLGQAL   94 (209)
Q Consensus        40 vG~~la~~L~~~g~~~ev~l~D~~~~~----------~~--~~----dl~~~~-~--------~~~v~~~~~~~d~~~a~   94 (209)
                      +|..++..++..|+  +|+++|.++..          +.  ..    .+.... .        ..+++... +.+.++++
T Consensus         1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~   77 (314)
T PRK08269          1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL   77 (314)
T ss_pred             CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence            47889999999999  99999997621          10  00    011110 0        12333321 12356889


Q ss_pred             CCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 028437           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p-~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~  173 (209)
                      ++||+||.++              .++.+..+.+...+.+.++ ++++  +||.+...   ++++.....  .|+|++|+
T Consensus        78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~---~~~la~~~~--~p~r~~g~  136 (314)
T PRK08269         78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFL---VTDLQRHVA--HPERFLNA  136 (314)
T ss_pred             ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCC---HHHHHhhcC--CcccEEEE
Confidence            9999999994              4566778888888988874 5443  88887753   333433332  35677776


Q ss_pred             e
Q 028437          174 T  174 (209)
Q Consensus       174 ~  174 (209)
                      +
T Consensus       137 H  137 (314)
T PRK08269        137 H  137 (314)
T ss_pred             e
Confidence            4

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.57  E-value=0.0016  Score=48.57  Aligned_cols=70  Identities=27%  Similarity=0.366  Sum_probs=43.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh-CCCccEE-EEEecCCc--hh-HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKL-NPLVSRL-ALYDIANT--PG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~-~g~~~ev-~l~D~~~~--~~-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      |||+|+|++|.+|+.++..+.+ .++  ++ -.+|+++.  .+ ...++.... ...+..   ++++++.++.+|++|-.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~--~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v---~~~l~~~~~~~DVvIDf   74 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGF--ELVGAVDRKPSAKVGKDVGELAGIG-PLGVPV---TDDLEELLEEADVVIDF   74 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTE--EEEEEEETTTSTTTTSBCHHHCTSS-T-SSBE---BS-HHHHTTH-SEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCc--EEEEEEecCCcccccchhhhhhCcC-Cccccc---chhHHHhcccCCEEEEc
Confidence            6999999999999999999988 555  54 45556431  11 111222221 112222   35788999999999887


Q ss_pred             C
Q 028437          104 A  104 (209)
Q Consensus       104 a  104 (209)
                      .
T Consensus        75 T   75 (124)
T PF01113_consen   75 T   75 (124)
T ss_dssp             S
T ss_pred             C
Confidence            3

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.57  E-value=0.00025  Score=53.76  Aligned_cols=73  Identities=21%  Similarity=0.378  Sum_probs=50.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ..+++|+|| |.+|+.++..|...|. .+|++++|+..+.  ....+...    .+.... .+++.+.+.++|+||.+.+
T Consensus        12 ~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~~----~~~~~~-~~~~~~~~~~~DivI~aT~   84 (135)
T PF01488_consen   12 GKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGGV----NIEAIP-LEDLEEALQEADIVINATP   84 (135)
T ss_dssp             TSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTGC----SEEEEE-GGGHCHHHHTESEEEE-SS
T ss_pred             CCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCcc----ccceee-HHHHHHHHhhCCeEEEecC
Confidence            359999999 9999999999999986 4799999975322  22333111    122221 2466678899999999976


Q ss_pred             CC
Q 028437          106 VP  107 (209)
Q Consensus       106 ~~  107 (209)
                      .+
T Consensus        85 ~~   86 (135)
T PF01488_consen   85 SG   86 (135)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.57  E-value=0.00046  Score=54.70  Aligned_cols=69  Identities=23%  Similarity=0.369  Sum_probs=47.8

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        24 ~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      ..-...+|+|+|. |.||+.++..|..-|.  +|+.+|+......  ...+..    +.    ..++++.++.||+|+++
T Consensus        32 ~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~~----~~----~~~l~ell~~aDiv~~~   98 (178)
T PF02826_consen   32 RELRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEFG----VE----YVSLDELLAQADIVSLH   98 (178)
T ss_dssp             S-STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHTT----EE----ESSHHHHHHH-SEEEE-
T ss_pred             cccCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hccccc----ce----eeehhhhcchhhhhhhh
Confidence            3444569999999 9999999999999999  9999999753222  111111    11    13678999999999998


Q ss_pred             CC
Q 028437          104 AG  105 (209)
Q Consensus       104 ag  105 (209)
                      ..
T Consensus        99 ~p  100 (178)
T PF02826_consen   99 LP  100 (178)
T ss_dssp             SS
T ss_pred             hc
Confidence            64

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.56  E-value=0.0015  Score=56.04  Aligned_cols=64  Identities=17%  Similarity=0.266  Sum_probs=44.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC---CCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~---~aD~Vi~~a  104 (209)
                      |||+++|. |.+|+.++..|+..|+  +|.++|+++..  ..++.+..    ...   ..++++.++   ++|+|+.+.
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEEG----ATG---ADSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence            58999999 9999999999999999  99999997532  22232221    111   123445554   469999885

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.55  E-value=0.00038  Score=57.73  Aligned_cols=34  Identities=21%  Similarity=0.156  Sum_probs=30.4

Q ss_pred             CCeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEecC
Q 028437           28 DRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        28 ~~kI~IiGas--G~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      .+.++|+||+  +.+|..++..|++.|.  +|++.+++
T Consensus         7 ~k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~   42 (252)
T PRK06079          7 GKKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQN   42 (252)
T ss_pred             CCEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCc
Confidence            3579999997  6899999999999998  99999886

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.55  E-value=0.0021  Score=54.67  Aligned_cols=117  Identities=20%  Similarity=0.292  Sum_probs=75.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCCcceeEe----ecCCchh-------hhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY----MGNDQLG-------QALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~~~v~~~----~~~~d~~-------~a~~   95 (209)
                      +.|+|||||..||.++|.+|+..|.  .++++.+..  ++....++.......++...    ...++.+       ..+.
T Consensus        13 kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg   90 (282)
T KOG1205|consen   13 KVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG   90 (282)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence            4688999999999999999999998  888887753  22222333333211111111    1112223       3467


Q ss_pred             CCCEEEEcCCCCCCCC-C---C---hhHHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437           96 DSDVVIIPAGVPRKPG-M---T---RDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g-~---~---r~~~~~~N----~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      +.|+.|+.||... .+ .   +   ..+.++.|    +-.++..++.|++.+ ++.|++++...+
T Consensus        91 ~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG  153 (282)
T KOG1205|consen   91 RVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAG  153 (282)
T ss_pred             CCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccc
Confidence            8999999999876 32 1   1   22334444    567788888888876 788888887665

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.55  E-value=0.002  Score=54.98  Aligned_cols=117  Identities=18%  Similarity=0.312  Sum_probs=73.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCC----CCcceeEe----ecCCchhhhcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN----TRSEVAGY----MGNDQLGQALED   96 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~----~~~~v~~~----~~~~d~~~a~~~   96 (209)
                      ....|+||||++.+|+.++.+++++|-  .++++|++..  ...+..+.+..    +.+++...    ......++.+.+
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~  114 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGD  114 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            335899999988999999999999998  9999999852  22333333321    11111110    001234566779


Q ss_pred             CCEEEEcCCCCC-CCC--CChhH---HHHHH----HHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           97 SDVVIIPAGVPR-KPG--MTRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~-~~g--~~r~~---~~~~N----~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      .|++|+.||... ++-  .++++   .++.|    .-.++++++.|.+.+ ++.++.++.
T Consensus       115 V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~IaS  173 (300)
T KOG1201|consen  115 VDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIAS  173 (300)
T ss_pred             ceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEehh
Confidence            999999999754 222  22222   23344    456788999998754 555655553

>PRK06125 short chain dehydrogenase; Provisional

Probab=97.54  E-value=0.0048  Score=51.03  Aligned_cols=114  Identities=18%  Similarity=0.184  Sum_probs=65.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEe----ecCCchhh---hcCCCCE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGY----MGNDQLGQ---ALEDSDV   99 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~----~~~~d~~~---a~~~aD~   99 (209)
                      ++++|+|++|.+|..++..|++.|.  +|+++++++..  ....++.... ..++..+    ...++.++   .+...|+
T Consensus         8 k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id~   84 (259)
T PRK06125          8 KRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDIDI   84 (259)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence            5899999999999999999999998  99999987421  1122232211 0111111    11112222   2457899


Q ss_pred             EEEcCCCCCCC---CCCh---hHHHHHHHHHHHHHHHH----HHhhCCCeEEEEecC
Q 028437          100 VIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (209)
Q Consensus       100 Vi~~ag~~~~~---g~~r---~~~~~~N~~~~~~i~~~----i~~~~p~~~viv~sn  146 (209)
                      +|+++|.....   ..+.   ...+..|+.....+.+.    +.+. ..+.++++|.
T Consensus        85 lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~iss  140 (259)
T PRK06125         85 LVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR-GSGVIVNVIG  140 (259)
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEecC
Confidence            99999874311   1122   23456666654444444    4432 2356666653

>PRK08818 prephenate dehydrogenase; Provisional

Probab=97.54  E-value=0.00092  Score=59.11  Aligned_cols=57  Identities=26%  Similarity=0.359  Sum_probs=44.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~-g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ...++|+|+|.+|.+|..++..|.+. ++  +|+.+|+.          +..          ..+.++.+++||+||+|+
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~--~V~g~D~~----------d~~----------~~~~~~~v~~aDlVilav   59 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQL--EVIGHDPA----------DPG----------SLDPATLLQRADVLIFSA   59 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCC--EEEEEcCC----------ccc----------cCCHHHHhcCCCEEEEeC
Confidence            34569999999999999999999875 66  89999873          110          124567789999999995

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.54  E-value=0.00059  Score=52.07  Aligned_cols=116  Identities=16%  Similarity=0.220  Sum_probs=69.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHh-----hcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAAD-----VGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~d-----l~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |+|+|+ |.+|..++..|.+.|+  +|.++++.+ ......     +........+.......+..+..+.+|+||++.-
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            789999 9999999999999999  999999964 111111     1111100111111111111245678999999953


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~  173 (209)
                      ..                ...+.++.++.+. ++..++.+-|-.+.    . +.+.+.  +|++++++-
T Consensus        77 a~----------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~----~-~~l~~~--~~~~~v~~g  122 (151)
T PF02558_consen   77 AY----------------QLEQALQSLKPYLDPNTTIVSLQNGMGN----E-EVLAEY--FPRPRVLGG  122 (151)
T ss_dssp             GG----------------GHHHHHHHHCTGEETTEEEEEESSSSSH----H-HHHHCH--STGSGEEEE
T ss_pred             cc----------------chHHHHHHHhhccCCCcEEEEEeCCCCc----H-HHHHHH--cCCCcEEEE
Confidence            21                1144566677665 67788889998872    2 333333  566777443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.53  E-value=0.00032  Score=56.16  Aligned_cols=74  Identities=22%  Similarity=0.278  Sum_probs=48.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEe--ecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGY--MGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~--~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ++++|+|++|.+|+.++..|.+.|.  +|++++++..+.  ...++.+.. ...+...  ...+++.++++++|+||.+.
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi~at  105 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVFAAG  105 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEEECC
Confidence            5899999999999999999999887  999999874221  222232111 1112211  11123457889999988875


Q ss_pred             C
Q 028437          105 G  105 (209)
Q Consensus       105 g  105 (209)
                      .
T Consensus       106 ~  106 (194)
T cd01078         106 A  106 (194)
T ss_pred             C
Confidence            4

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK13243 glyoxylate reductase; Reviewed

Probab=97.53  E-value=0.00074  Score=58.90  Aligned_cols=66  Identities=24%  Similarity=0.378  Sum_probs=48.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      -..++|+|+|. |.||+.++..|...|.  +|..+|+........+.   .    ..    ..++++.+++||+|+++..
T Consensus       148 L~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~---~----~~----~~~l~ell~~aDiV~l~lP  213 (333)
T PRK13243        148 VYGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEAEKEL---G----AE----YRPLEELLRESDFVSLHVP  213 (333)
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHHHc---C----CE----ecCHHHHHhhCCEEEEeCC
Confidence            34469999999 9999999999999998  99999986422111111   1    11    1257888999999999963

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=97.51  E-value=0.00028  Score=60.66  Aligned_cols=80  Identities=20%  Similarity=0.346  Sum_probs=50.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEecCCch--h---HHHhhcCCCCC-----cceeEeecCCchhhhcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTP--G---VAADVGHINTR-----SEVAGYMGNDQLGQALED   96 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~-g~~~ev~l~D~~~~~--~---~~~dl~~~~~~-----~~v~~~~~~~d~~~a~~~   96 (209)
                      ++||+.+|| |+||...+..++.+ ..+ +|.++|.+...  +   ..+.+.+...+     ++=+.+..++|.++++++
T Consensus         1 ~~kicciga-gyvggptcavia~kcp~i-~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~e   78 (481)
T KOG2666|consen    1 MVKICCIGA-GYVGGPTCAVIALKCPDI-EVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKE   78 (481)
T ss_pred             CceEEEecC-cccCCcchheeeecCCce-EEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhh
Confidence            469999999 99999887655443 322 89999986421  0   01112222110     111111225689999999


Q ss_pred             CCEEEEcCCCCCC
Q 028437           97 SDVVIIPAGVPRK  109 (209)
Q Consensus        97 aD~Vi~~ag~~~~  109 (209)
                      +|+|++++..|.+
T Consensus        79 adlvfisvntptk   91 (481)
T KOG2666|consen   79 ADLVFISVNTPTK   91 (481)
T ss_pred             cceEEEEecCCcc
Confidence            9999999887754

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=97.51  E-value=0.0015  Score=66.47  Aligned_cols=116  Identities=13%  Similarity=0.048  Sum_probs=70.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC--CccEEEEEecCCchhH-HHhhcC---------CCCCcceeEeec---------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIANTPGV-AADVGH---------INTRSEVAGYMG---------   86 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g--~~~ev~l~D~~~~~~~-~~dl~~---------~~~~~~v~~~~~---------   86 (209)
                      +++|+|+||+||+|++++..|++.+  ...+|++..+...... ...+.+         .....++..+.+         
T Consensus       971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443       971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred             CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence            4799999999999999999999876  2237787777532111 111110         000011222111         


Q ss_pred             -CCchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           87 -NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        87 -~~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                       ...+++..+++|+|||+|+... ......++...|+..+.++++.+.+.... +++++|
T Consensus      1051 ~~~~~~~l~~~~d~iiH~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~-~~v~vS 1108 (1389)
T TIGR03443      1051 SDEKWSDLTNEVDVIIHNGALVH-WVYPYSKLRDANVIGTINVLNLCAEGKAK-QFSFVS 1108 (1389)
T ss_pred             CHHHHHHHHhcCCEEEECCcEec-CccCHHHHHHhHHHHHHHHHHHHHhCCCc-eEEEEe
Confidence             1123445578999999987653 22334445567999999999999865433 455555

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK05599 hypothetical protein; Provisional

Probab=97.50  E-value=0.0083  Score=49.45  Aligned_cols=117  Identities=13%  Similarity=0.168  Sum_probs=64.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeE----eecCCch-------hhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAG----YMGNDQL-------GQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~----~~~~~d~-------~~a~~   95 (209)
                      |.++|+||++.+|..++..|. +|.  +|++.++++.  +....++...... .+..    +...++.       .+.+.
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~--~Vil~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g   76 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGE--DVVLAARRPEAAQGLASDLRQRGAT-SVHVLSFDAQDLDTHRELVKQTQELAG   76 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence            468999999999999999998 476  9999998642  2222333322110 1111    1111111       22235


Q ss_pred             CCCEEEEcCCCCCCCC---CCh---hHHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437           96 DSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~r---~~~~~~N~~----~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      ..|++|+.+|......   .+.   .+....|+.    ..+.+.+.+.+....+.++++|....
T Consensus        77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~  140 (246)
T PRK05599         77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAG  140 (246)
T ss_pred             CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence            6899999998743211   111   122333433    33344555654433567787775443

>PRK08605 D-lactate dehydrogenase; Validated

Probab=97.49  E-value=0.00049  Score=59.98  Aligned_cols=65  Identities=29%  Similarity=0.383  Sum_probs=46.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHH-hCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~-~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      -..++|+|+|. |.+|+.++..|+ ..|.  +|+.+|+...... .   ..     +..   ..++++++++||+|+++.
T Consensus       144 l~g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~-~---~~-----~~~---~~~l~ell~~aDvIvl~l  208 (332)
T PRK08605        144 IKDLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFPNAKA-A---TY-----VDY---KDTIEEAVEGADIVTLHM  208 (332)
T ss_pred             eCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCccHhH-H---hh-----ccc---cCCHHHHHHhCCEEEEeC
Confidence            34579999999 999999999984 3466  9999998642211 1   10     111   236788999999999986


Q ss_pred             C
Q 028437          105 G  105 (209)
Q Consensus       105 g  105 (209)
                      .
T Consensus       209 P  209 (332)
T PRK08605        209 P  209 (332)
T ss_pred             C
Confidence            3

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.48  E-value=0.0025  Score=53.84  Aligned_cols=96  Identities=17%  Similarity=0.241  Sum_probs=61.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC--ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~--~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      +|||+++|+ |.+|..++..|...|.  ..+|++.++++.+..  ++... +....     +.+..++.+++|+||.+. 
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~~~-~g~~~-----~~~~~~~~~~advv~Lav-   70 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALAAE-YGVVT-----TTDNQEAVEEADVVFLAV-   70 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH--HHHHH-cCCcc-----cCcHHHHHhhCCEEEEEe-
Confidence            479999999 9999999999999882  348888888643221  22221 11111     235568889999999996 


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~  148 (209)
                         +|            +.+.++++.++...++..+|-+.-.+
T Consensus        71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv   98 (266)
T COG0345          71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGV   98 (266)
T ss_pred             ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCC
Confidence               22            22356666666533455554444333

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.47  E-value=0.00029  Score=61.45  Aligned_cols=72  Identities=22%  Similarity=0.320  Sum_probs=46.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ++||+|+||+|++|..++..|.++++ ..++..+.++...++...+...    .+... .. + ..+++++|+||++.|.
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~----~i~v~-d~-~-~~~~~~vDvVf~A~g~   73 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGK----ELKVE-DL-T-TFDFSGVDIALFSAGG   73 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCc----eeEEe-eC-C-HHHHcCCCEEEECCCh
Confidence            46999999999999999999998776 2377777665333332222221    12211 11 1 2356799999999764

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.46  E-value=0.00099  Score=56.47  Aligned_cols=66  Identities=11%  Similarity=0.254  Sum_probs=46.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC--ccEEEEEecCCchhHHHhhcC-CCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGH-INTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~--~~ev~l~D~~~~~~~~~dl~~-~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +||++||+ |.+|++++..|++.|+  ..+|+++|+++..  ...+.+ ..    +..   .++..+.+++||+||++.
T Consensus         3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~--~~~l~~~~g----~~~---~~~~~e~~~~aDiIiLav   71 (272)
T PRK12491          3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSN--LKNASDKYG----ITI---TTNNNEVANSADILILSI   71 (272)
T ss_pred             CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHH--HHHHHHhcC----cEE---eCCcHHHHhhCCEEEEEe
Confidence            48999999 9999999999998885  3479999986422  222222 11    111   124457788999999996

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=97.46  E-value=0.00034  Score=61.04  Aligned_cols=73  Identities=21%  Similarity=0.295  Sum_probs=47.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .+.+||+|+||||++|..+...|.++.| ..+|..+..+...++...+...    .+... .. + +.++.++|+||+++
T Consensus         2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~----~~~v~-~~-~-~~~~~~~Dvvf~a~   74 (336)
T PRK08040          2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK----SVTVQ-DA-A-EFDWSQAQLAFFVA   74 (336)
T ss_pred             CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc----ceEEE-eC-c-hhhccCCCEEEECC
Confidence            4567999999999999999999988544 3488888665433333222221    12211 11 1 23457899999986


Q ss_pred             C
Q 028437          105 G  105 (209)
Q Consensus       105 g  105 (209)
                      +
T Consensus        75 p   75 (336)
T PRK08040         75 G   75 (336)
T ss_pred             C
Confidence            5

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.46  E-value=0.0014  Score=61.77  Aligned_cols=138  Identities=13%  Similarity=0.149  Sum_probs=82.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCc---hh-hhcCCCCEEEEc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LG-QALEDSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~-~a~~~aD~Vi~~  103 (209)
                      ..+|.|+|. |.+|+.++..|.++|+  +++++|.|+.  .+..+.+..... +.+  +.++   ++ .-+++||.+|.+
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~--~v~~~~~~g~~v-~~G--Dat~~~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPD--HIETLRKFGMKV-FYG--DATRMDLLESAGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHH--HHHHHHhcCCeE-EEE--eCCCHHHHHhcCCCcCCEEEEE
Confidence            368999999 9999999999999999  9999999863  222333322211 111  1122   22 335689999998


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEehhhHHHHHH
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT  183 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~~lds~r~~~  183 (209)
                      ...           -+.|    ..++..+++.+|+.+++.-++...     -.+.+.+.+   .+.++--+...+.++.+
T Consensus       472 ~~d-----------~~~n----~~i~~~ar~~~p~~~iiaRa~d~~-----~~~~L~~~G---ad~v~~e~~e~sl~l~~  528 (621)
T PRK03562        472 IDD-----------PQTS----LQLVELVKEHFPHLQIIARARDVD-----HYIRLRQAG---VEKPERETFEGALKSGR  528 (621)
T ss_pred             eCC-----------HHHH----HHHHHHHHHhCCCCeEEEEECCHH-----HHHHHHHCC---CCEEehhhHhHHHHHHH
Confidence            421           1344    345666777788876655443222     123344432   34443334444555666


Q ss_pred             HHHHHcCCCCCCe
Q 028437          184 FYAGKANVNVAGL  196 (209)
Q Consensus       184 ~la~~l~v~~~~v  196 (209)
                      .+-+.+|++++++
T Consensus       529 ~~L~~lg~~~~~~  541 (621)
T PRK03562        529 LVLESLGLGPYEA  541 (621)
T ss_pred             HHHHHcCCCHHHH
Confidence            6667777776544

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.45  E-value=0.0036  Score=53.85  Aligned_cols=115  Identities=16%  Similarity=0.102  Sum_probs=67.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC--------CCCcceeEeecCCchhhhcCCCCE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--------NTRSEVAGYMGNDQLGQALEDSDV   99 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~--------~~~~~v~~~~~~~d~~~a~~~aD~   99 (209)
                      .|||+|+|+ |.||..++..|.+.|+  +|+++++.+.  ....+...        .....+...  ..+ .+....+|+
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~--~~~~i~~~~Gl~i~~~g~~~~~~~~--~~~-~~~~~~~D~   73 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQ--RLAAYQQAGGLTLVEQGQASLYAIP--AET-ADAAEPIHR   73 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechH--HHHHHhhcCCeEEeeCCcceeeccC--CCC-cccccccCE
Confidence            369999999 9999999999999998  9999999531  11111111        000001100  011 123457899


Q ss_pred             EEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 028437          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (209)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~-~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~  173 (209)
                      ||++.-..                -..+.++.+..+ .++..++.+-|-++..-     .+.+.  +|.+++++-
T Consensus        74 viv~vK~~----------------~~~~al~~l~~~l~~~t~vv~lQNGv~~~e-----~l~~~--~~~~~v~~g  125 (305)
T PRK05708         74 LLLACKAY----------------DAEPAVASLAHRLAPGAELLLLQNGLGSQD-----AVAAR--VPHARCIFA  125 (305)
T ss_pred             EEEECCHH----------------hHHHHHHHHHhhCCCCCEEEEEeCCCCCHH-----HHHHh--CCCCcEEEE
Confidence            99985211                113344455544 37788888899887322     23332  566666543

>PRK06484 short chain dehydrogenase; Validated

Probab=97.45  E-value=0.001  Score=60.79  Aligned_cols=114  Identities=22%  Similarity=0.205  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCccee-EeecCCchhh-------hcCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVA-GYMGNDQLGQ-------ALEDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~-~~~~~~d~~~-------a~~~aD   98 (209)
                      +.++|+||++.+|..++..|++.|.  +|++++++...  ....++.... . .+. ++...+++++       .+...|
T Consensus         6 k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~-~~~~D~~~~~~~~~~~~~~~~~~g~iD   81 (520)
T PRK06484          6 RVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNVERARERADSLGPDH-H-ALAMDVSDEAQIREGFEQLHREFGRID   81 (520)
T ss_pred             eEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCce-e-EEEeccCCHHHHHHHHHHHHHHhCCCC
Confidence            4789999999999999999999998  99999986421  1122221110 0 000 0111112222       234689


Q ss_pred             EEEEcCCCCC---CC--CCC---hhHHHHHHHHHHHHHHHHHHhh----CCCeEEEEecC
Q 028437           99 VVIIPAGVPR---KP--GMT---RDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN  146 (209)
Q Consensus        99 ~Vi~~ag~~~---~~--g~~---r~~~~~~N~~~~~~i~~~i~~~----~p~~~viv~sn  146 (209)
                      ++|+++|...   .+  ..+   ....+..|+.....+.+.+.++    ...+.++++|.
T Consensus        82 ~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS  141 (520)
T PRK06484         82 VLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVAS  141 (520)
T ss_pred             EEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence            9999998731   11  122   2345667766555555544433    23336777764

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=97.43  E-value=0.00049  Score=57.70  Aligned_cols=101  Identities=22%  Similarity=0.261  Sum_probs=68.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC----CCc-----cEEEEEecCCc--------hhHHHhhcCCCCCcceeEeecCCchh
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLN----PLV-----SRLALYDIANT--------PGVAADVGHINTRSEVAGYMGNDQLG   91 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~----g~~-----~ev~l~D~~~~--------~~~~~dl~~~~~~~~v~~~~~~~d~~   91 (209)
                      .||++.|| |..|..++..|...    |+-     ++++++|++-+        .....++.+...+.  ..   ..++.
T Consensus        26 ~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~--~~---~~~L~   99 (255)
T PF03949_consen   26 QRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPE--KD---WGSLL   99 (255)
T ss_dssp             -EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTT--T-----SSHH
T ss_pred             cEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCccc--cc---ccCHH
Confidence            49999999 99999998877654    873     68999999631        11122222222111  10   13789


Q ss_pred             hhcCCC--CEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437           92 QALEDS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus        92 ~a~~~a--D~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      ++++++  |++|=+.+.+.              -+.+++++.|.++++..+|.-.|||..
T Consensus       100 eav~~~kPtvLIG~S~~~g--------------~ft~evv~~Ma~~~erPIIF~LSNPt~  145 (255)
T PF03949_consen  100 EAVKGAKPTVLIGLSGQGG--------------AFTEEVVRAMAKHNERPIIFPLSNPTP  145 (255)
T ss_dssp             HHHHCH--SEEEECSSSTT--------------SS-HHHHHHCHHHSSSEEEEE-SSSCG
T ss_pred             HHHHhcCCCEEEEecCCCC--------------cCCHHHHHHHhccCCCCEEEECCCCCC
Confidence            999999  99998876542              245788999999999888888899976

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.43  E-value=0.00044  Score=59.20  Aligned_cols=64  Identities=22%  Similarity=0.335  Sum_probs=46.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |||++||. |.+|..++..|++.|+  +|.++|+++.   ..++.....    ..   ..+..++.++||+||++..
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g~----~~---~~s~~~~~~~advVi~~v~   64 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLGA----VS---VETARQVTEASDIIFIMVP   64 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcCC----ee---cCCHHHHHhcCCEEEEeCC
Confidence            48999999 9999999999999998  9999998652   122322211    11   1245677889999999853

>PRK08303 short chain dehydrogenase; Provisional

Probab=97.41  E-value=0.01  Score=50.93  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      +.++|+||++.+|..++..|++.|.  +|++.+++
T Consensus         9 k~~lITGgs~GIG~aia~~la~~G~--~Vv~~~r~   41 (305)
T PRK08303          9 KVALVAGATRGAGRGIAVELGAAGA--TVYVTGRS   41 (305)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecc
Confidence            5789999999999999999999998  99999986

>PLN02712 arogenate dehydrogenase

Probab=97.41  E-value=0.0035  Score=59.58  Aligned_cols=65  Identities=18%  Similarity=0.156  Sum_probs=45.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhc-CCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~-~~aD~Vi~~a  104 (209)
                      ++|||+|+|. |.+|..++..|.+.|+  +|..+|++.....+.++   .    +..   ..+.++.+ +++|+||++.
T Consensus        51 ~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~---G----v~~---~~d~~e~~~~~aDvViLav  116 (667)
T PLN02712         51 TQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL---G----VSF---FLDPHDLCERHPDVILLCT  116 (667)
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc---C----CEE---eCCHHHHhhcCCCEEEEcC
Confidence            4479999998 9999999999999998  99999986322122211   1    111   12455544 5799999995

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.40  E-value=0.0011  Score=57.57  Aligned_cols=74  Identities=30%  Similarity=0.399  Sum_probs=47.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCCchhHH-HhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~~~~~~-~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ++||+|+||+|.||+.++..|.++.+ +.++.++-..+..++. .++......  +...  ..+ ...++++|+|++++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~--v~~~--~~~-~~~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIG--VPED--AAD-EFVFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCcccc--Cccc--ccc-ccccccCCEEEEeCc
Confidence            46999999999999999999998654 6667777765433333 333332111  1100  012 245669999999986


Q ss_pred             C
Q 028437          106 V  106 (209)
Q Consensus       106 ~  106 (209)
                      .
T Consensus        76 ~   76 (334)
T COG0136          76 G   76 (334)
T ss_pred             h
Confidence            3

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.39  E-value=0.0058  Score=50.42  Aligned_cols=114  Identities=16%  Similarity=0.167  Sum_probs=66.3

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEecCCc-----------hh--HHHhhcCCCCCcceeEee----cCCc
Q 028437           29 RKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIANT-----------PG--VAADVGHINTRSEVAGYM----GNDQ   89 (209)
Q Consensus        29 ~kI~IiGasG--~vG~~la~~L~~~g~~~ev~l~D~~~~-----------~~--~~~dl~~~~~~~~v~~~~----~~~d   89 (209)
                      ++|.|+||+|  .+|..++..|++.|.  +|+++++++.           ..  ...++....  .++..+.    ...+
T Consensus         6 k~vlItGas~~~giG~~la~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   81 (256)
T PRK12748          6 KIALVTGASRLNGIGAAVCRRLAAKGI--DIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYG--VRCEHMEIDLSQPYA   81 (256)
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHcCC--cEEEEcCCccccccccccchhhHHHHHHHHHhcC--CeEEEEECCCCCHHH
Confidence            4799999985  699999999999998  9999987611           01  111221111  1111111    0111


Q ss_pred             hhh-------hcCCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           90 LGQ-------ALEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        90 ~~~-------a~~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      +++       .+...|+||+++|......   .+   ....+..|+.....+.+.+.+.   .+...++++|.
T Consensus        82 ~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss  154 (256)
T PRK12748         82 PNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTS  154 (256)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECC
Confidence            112       2345799999998642111   12   2344678888777777776543   23456777764

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.39  E-value=0.001  Score=56.82  Aligned_cols=75  Identities=23%  Similarity=0.386  Sum_probs=50.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc--
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP--  103 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~--  103 (209)
                      ..||+|+|+ |.+|++++..|...|. .+|+++|++..+  ..+.++.+......+..   .+++++.++++|+||++  
T Consensus       127 ~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~---~~~~~~~~~~aDiVInaTp  201 (284)
T PRK12549        127 LERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARFPAARATA---GSDLAAALAAADGLVHATP  201 (284)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhCCCeEEEe---ccchHhhhCCCCEEEECCc
Confidence            358999999 9999999999999885 589999997532  23334433211111111   23455678899999999  


Q ss_pred             CCCC
Q 028437          104 AGVP  107 (209)
Q Consensus       104 ag~~  107 (209)
                      +|..
T Consensus       202 ~Gm~  205 (284)
T PRK12549        202 TGMA  205 (284)
T ss_pred             CCCC
Confidence            4543

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=97.39  E-value=0.0015  Score=56.09  Aligned_cols=114  Identities=15%  Similarity=0.064  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEecCCchh--HHHhhcCCCCCcceeEe----ecCCchhhh-------c
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPG--VAADVGHINTRSEVAGY----MGNDQLGQA-------L   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g-~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~----~~~~d~~~a-------~   94 (209)
                      +.++|+||++.+|.+++..|++.| +  +|++.+++....  ...++....  ..+..+    ...++.+++       +
T Consensus         4 k~vlITGas~GIG~aia~~L~~~G~~--~V~l~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~   79 (314)
T TIGR01289         4 PTVIITGASSGLGLYAAKALAATGEW--HVIMACRDFLKAEQAAKSLGMPK--DSYTIMHLDLGSLDSVRQFVQQFRESG   79 (314)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCCC--EEEEEeCCHHHHHHHHHHhcCCC--CeEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            378999999999999999999999 8  999999864211  122232111  111111    001112211       3


Q ss_pred             CCCCEEEEcCCCCCC----CCCCh---hHHHHHHHHH----HHHHHHHHHhhCC-CeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRK----PGMTR---DDLFNINAGI----VKDLCSAIAKYCP-NAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~----~g~~r---~~~~~~N~~~----~~~i~~~i~~~~p-~~~viv~sn  146 (209)
                      ...|++|+.||....    +..+.   ...+..|+..    ++.+.+.+++... .++||++|.
T Consensus        80 ~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS  143 (314)
T TIGR01289        80 RPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGS  143 (314)
T ss_pred             CCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEec
Confidence            468999999986421    11222   2345566654    4555666654322 357777764

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.38  E-value=0.0002  Score=63.34  Aligned_cols=73  Identities=25%  Similarity=0.292  Sum_probs=45.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeE--ee--cCCchhhhcCCCCEEEEcCCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG--YM--GNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~--~~--~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      |+|+|+ |++|+.++..|++.+...+|++.|++..+..  .+........+..  ..  ..+++++.++++|+||+++|.
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAE--RLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP   77 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHH--HHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHH--HHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence            789999 9999999999999886558999999853222  1111100011111  11  122467789999999999864

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.37  E-value=0.013  Score=49.11  Aligned_cols=114  Identities=14%  Similarity=0.141  Sum_probs=63.4

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCC-C----CCcceeEeecCCch-------hhh
Q 028437           29 RKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHI-N----TRSEVAGYMGNDQL-------GQA   93 (209)
Q Consensus        29 ~kI~IiGasG--~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~-~----~~~~v~~~~~~~d~-------~~a   93 (209)
                      +.++|+||++  .+|..++..|++.|.  +|++.+++... ....++... .    ...++..   .++.       .+.
T Consensus         8 k~~lVTGas~~~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d---~~~v~~~~~~~~~~   82 (271)
T PRK06505          8 KRGLIMGVANDHSIAWGIAKQLAAQGA--ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVED---IASVDAVFEALEKK   82 (271)
T ss_pred             CEEEEeCCCCCCcHHHHHHHHHHhCCC--EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCC---HHHHHHHHHHHHHH
Confidence            4789999975  899999999999998  99999886321 111222111 1    0111111   1111       122


Q ss_pred             cCCCCEEEEcCCCCCC-----C--CCChh---HHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437           94 LEDSDVVIIPAGVPRK-----P--GMTRD---DLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus        94 ~~~aD~Vi~~ag~~~~-----~--g~~r~---~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                      +...|++|++||....     +  ..+.+   ..+..|+.....+.+.+..+- ..+.+|++|..
T Consensus        83 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~  147 (271)
T PRK06505         83 WGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYG  147 (271)
T ss_pred             hCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCC
Confidence            3568999999997531     1  12222   335566665544444433221 23667777643

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.37  E-value=0.0016  Score=54.43  Aligned_cols=69  Identities=20%  Similarity=0.249  Sum_probs=45.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |||+|+|+ |.+|+.++..|.+.|+ ..++.++++++..  ..++.... . ....   ..+..++++++|+||++..
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~-~-~~~~---~~~~~~~~~~aDvVilav~   70 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF-P-KVRI---AKDNQAVVDRSDVVFLAVR   70 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc-C-CceE---eCCHHHHHHhCCEEEEEeC
Confidence            48999999 9999999999998875 3456788876422  22222211 0 0111   1345677889999999963

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.36  E-value=0.0022  Score=52.74  Aligned_cols=68  Identities=22%  Similarity=0.319  Sum_probs=43.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g-~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |||.++|. |.+|..++..+.... -+.-+.++|++..+..  ++...-..+.      .+++.+.+.+.|.++.+|+
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~--~~~~~~~~~~------~s~ide~~~~~DlvVEaAS   69 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAK--ELEASVGRRC------VSDIDELIAEVDLVVEAAS   69 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHH--HHHhhcCCCc------cccHHHHhhccceeeeeCC
Confidence            58999999 999999998776553 3567888898753222  2222211100      1345566678888888874

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=97.36  E-value=0.0015  Score=56.57  Aligned_cols=65  Identities=22%  Similarity=0.321  Sum_probs=47.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ..++|+|+|. |.||+.++..|..-|.  +|..+|+.....  .....         +....++++.+++||+|+++..
T Consensus       135 ~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~--~~~~~---------~~~~~~l~e~l~~aDvvv~~lP  199 (312)
T PRK15469        135 EDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSW--PGVQS---------FAGREELSAFLSQTRVLINLLP  199 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCC--CCcee---------ecccccHHHHHhcCCEEEECCC
Confidence            3469999999 9999999999999998  999999853210  00000         0012367899999999999853

>PRK07574 formate dehydrogenase; Provisional

Probab=97.36  E-value=0.0016  Score=57.95  Aligned_cols=67  Identities=21%  Similarity=0.253  Sum_probs=48.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ..++|+|+|. |.||+.++..|..-|.  +|..+|+........  ....    +..   ..++++.+++||+|+++..
T Consensus       191 ~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~~--~~~g----~~~---~~~l~ell~~aDvV~l~lP  257 (385)
T PRK07574        191 EGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEEVE--QELG----LTY---HVSFDSLVSVCDVVTIHCP  257 (385)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchhhH--hhcC----cee---cCCHHHHhhcCCEEEEcCC
Confidence            4469999999 9999999999999998  999999864211111  1111    111   1357899999999999853

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.35  E-value=0.0026  Score=50.36  Aligned_cols=33  Identities=36%  Similarity=0.633  Sum_probs=30.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ||+|+|+ |.+|+.++..|+..|. ++++++|.+.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            6899999 9999999999999997 5899999973

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07831 short chain dehydrogenase; Provisional

Probab=97.35  E-value=0.0035  Score=51.91  Aligned_cols=115  Identities=20%  Similarity=0.181  Sum_probs=63.0

Q ss_pred             CeEEEEcCCC-chHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee----cCCchhhh-------c
Q 028437           29 RKVAVLGAAG-GIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM----GNDQLGQA-------L   94 (209)
Q Consensus        29 ~kI~IiGasG-~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~----~~~d~~~a-------~   94 (209)
                      ++++|+||+| .+|..++..|++.|.  +|++.|++..  .....++........+..+.    ..++.+++       +
T Consensus        18 k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   95 (262)
T PRK07831         18 KVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERL   95 (262)
T ss_pred             CEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            5899999987 599999999999998  8999998642  11222232210000111111    11122222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHH----hhCCCeEEEEec
Q 028437           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIA----KYCPNAIVNMIS  145 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~----~~~p~~~viv~s  145 (209)
                      ...|++|+++|......   .+   ..+.+..|+.....+++.+.    +....+.+++++
T Consensus        96 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~s  156 (262)
T PRK07831         96 GRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNA  156 (262)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            46799999998643111   11   22334566665555444443    322245666654

>PRK07791 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0046  Score=52.33  Aligned_cols=33  Identities=42%  Similarity=0.611  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      +.++|+||++.+|..++..|++.|.  +|++.+++
T Consensus         7 k~~lITGas~GIG~aia~~la~~G~--~vii~~~~   39 (286)
T PRK07791          7 RVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIG   39 (286)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEeeCC
Confidence            5799999999999999999999998  89998875

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.33  E-value=0.0065  Score=51.77  Aligned_cols=68  Identities=25%  Similarity=0.405  Sum_probs=45.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHH---HhhcCCCCCcceeEeecCCc-hhhhcCCCCEEEEc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA---ADVGHINTRSEVAGYMGNDQ-LGQALEDSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~---~dl~~~~~~~~v~~~~~~~d-~~~a~~~aD~Vi~~  103 (209)
                      +++|+|+|. |.+|..++..|...|+  .+.+++++...+..   .++.-.+   ..     +.+ ..++.+++|+||.+
T Consensus         3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~d---~~-----~~~~~~~~~~~aD~Viva   71 (279)
T COG0287           3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVID---EL-----TVAGLAEAAAEADLVIVA   71 (279)
T ss_pred             CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCccc---cc-----ccchhhhhcccCCEEEEe
Confidence            469999998 9999999999999999  66666665422211   1122111   00     112 25778889999999


Q ss_pred             CCC
Q 028437          104 AGV  106 (209)
Q Consensus       104 ag~  106 (209)
                      +-+
T Consensus        72 vPi   74 (279)
T COG0287          72 VPI   74 (279)
T ss_pred             ccH
Confidence            643

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=97.33  E-value=0.0023  Score=49.05  Aligned_cols=116  Identities=16%  Similarity=0.169  Sum_probs=72.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--c--hhHHHhhcCCCCCcceeEee-c-C--C-------chhhhc
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T--PGVAADVGHINTRSEVAGYM-G-N--D-------QLGQAL   94 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~--~~~~~dl~~~~~~~~v~~~~-~-~--~-------d~~~a~   94 (209)
                      .++|+||+|.+|..++..|+++|- ..|+++++++  .  .....++....  ..+..+. + +  +       ...+..
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~-~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGA-RVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRF   78 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTT-EEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCc-eEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence            589999999999999999999943 2888888872  1  11222333222  1122111 0 1  1       112234


Q ss_pred             CCCCEEEEcCCCCCCCCC------ChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437           95 EDSDVVIIPAGVPRKPGM------TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g~------~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      ...|++|+++|.......      ...+.+..|+.....+.+.+.. .+.+.++++|...+
T Consensus        79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~~  138 (167)
T PF00106_consen   79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIAG  138 (167)
T ss_dssp             SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGGG
T ss_pred             ccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchhh
Confidence            578999999998752211      1234567787777777777777 55778888875544

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.32  E-value=0.0024  Score=54.00  Aligned_cols=66  Identities=20%  Similarity=0.299  Sum_probs=44.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||+|+|. |.+|..++..|.+.|+..+|+.+|+++..  ...+......   ..   ..+.+++ .++|+||++.
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~~---~~---~~~~~~~-~~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGLV---DE---IVSFEEL-KKCDVIFLAI   66 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCCC---cc---cCCHHHH-hcCCEEEEeC
Confidence            58999998 99999999999998864478899986422  1122222110   00   1234444 4599999996

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.32  E-value=0.00069  Score=59.35  Aligned_cols=73  Identities=21%  Similarity=0.344  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHh-CCC-ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKL-NPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~-~g~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +.+||+|+||||++|+.++..|.. ..+ +.++.++......++...+...  ...+..    .+ .+.++++|+||+++
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~--~l~v~~----~~-~~~~~~~Divf~a~   76 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR--EIIIQE----AK-INSFEGVDIAFFSA   76 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc--ceEEEe----CC-HHHhcCCCEEEECC
Confidence            447999999999999999999985 444 3458888765433333333322  112221    13 24568999999987


Q ss_pred             CC
Q 028437          105 GV  106 (209)
Q Consensus       105 g~  106 (209)
                      +.
T Consensus        77 ~~   78 (347)
T PRK06728         77 GG   78 (347)
T ss_pred             Ch
Confidence            53

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.32  E-value=0.0068  Score=50.35  Aligned_cols=112  Identities=13%  Similarity=0.197  Sum_probs=62.7

Q ss_pred             CeEEEEcC--CCchHHHHHHHHHhCCCccEEEEEecCCchh----HHHhhcCCC--CCcceeEeecCCch-------hhh
Q 028437           29 RKVAVLGA--AGGIGQPLALLMKLNPLVSRLALYDIANTPG----VAADVGHIN--TRSEVAGYMGNDQL-------GQA   93 (209)
Q Consensus        29 ~kI~IiGa--sG~vG~~la~~L~~~g~~~ev~l~D~~~~~~----~~~dl~~~~--~~~~v~~~~~~~d~-------~~a   93 (209)
                      +.++|+||  ++.+|..++..|++.|.  .|++.+++....    ...++....  ...++..   .++.       .+.
T Consensus         8 k~~lItGa~~s~GIG~a~a~~la~~G~--~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~i~~~~~~~~~~   82 (256)
T PRK07889          8 KRILVTGVITDSSIAFHVARVAQEQGA--EVVLTGFGRALRLTERIAKRLPEPAPVLELDVTN---EEHLASLADRVREH   82 (256)
T ss_pred             CEEEEeCCCCcchHHHHHHHHHHHCCC--EEEEecCccchhHHHHHHHhcCCCCcEEeCCCCC---HHHHHHHHHHHHHH
Confidence            47999998  78999999999999998  999998753111    111222110  0111111   1111       122


Q ss_pred             cCCCCEEEEcCCCCCC-----C--CCChh---HHHHHHHHHHHHHHHHHHhhC-CCeEEEEec
Q 028437           94 LEDSDVVIIPAGVPRK-----P--GMTRD---DLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (209)
Q Consensus        94 ~~~aD~Vi~~ag~~~~-----~--g~~r~---~~~~~N~~~~~~i~~~i~~~~-p~~~viv~s  145 (209)
                      +...|++|+.||....     +  ..+.+   ..+..|+.....+.+.+...- +.+.+++++
T Consensus        83 ~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is  145 (256)
T PRK07889         83 VDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD  145 (256)
T ss_pred             cCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence            4568999999987521     1  11222   246677665554444443322 335565554

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=97.31  E-value=0.0016  Score=59.39  Aligned_cols=70  Identities=17%  Similarity=0.289  Sum_probs=45.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC-CCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-NTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~-~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +|+++|. |.+|.+++..|+..|+  +|.++|+++.+  ..++... .....+.......++.+.++++|+|+.+.
T Consensus         1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~--~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v   71 (467)
T TIGR00873         1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEK--TDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMV   71 (467)
T ss_pred             CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHH--HHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEEC
Confidence            4899999 9999999999999999  99999997532  2223221 00001111111123333456799999985

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.31  E-value=0.00068  Score=59.43  Aligned_cols=74  Identities=19%  Similarity=0.297  Sum_probs=46.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ..++||+|+||+|++|..++..|..++| ..++..+......++..+...  ....+..    .+ .++++++|+||+++
T Consensus         5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~--~~~~v~~----~~-~~~~~~~D~vf~a~   77 (344)
T PLN02383          5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG--RDYTVEE----LT-EDSFDGVDIALFSA   77 (344)
T ss_pred             CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC--ceeEEEe----CC-HHHHcCCCEEEECC
Confidence            3457999999999999999999988665 346766655432222222211  1111111    12 35678999999987


Q ss_pred             CC
Q 028437          105 GV  106 (209)
Q Consensus       105 g~  106 (209)
                      +.
T Consensus        78 p~   79 (344)
T PLN02383         78 GG   79 (344)
T ss_pred             Cc
Confidence            64

>PRK08862 short chain dehydrogenase; Provisional

Probab=97.31  E-value=0.0099  Score=48.66  Aligned_cols=114  Identities=11%  Similarity=0.149  Sum_probs=64.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEe----ecCCchh-------hhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGY----MGNDQLG-------QALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~----~~~~d~~-------~a~~   95 (209)
                      +.++|+||++.+|..++..|++.|.  +|+++++++..  ....++.....  .+..+    ...++.+       +.+.
T Consensus         6 k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (227)
T PRK08862          6 SIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALTD--NVYSFQLKDFSQESIRHLFDAIEQQFN   81 (227)
T ss_pred             eEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCC--CeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4899999999999999999999999  99999987521  12222322111  11111    1111222       2234


Q ss_pred             -CCCEEEEcCCCCCCCC----CChhH---HHHHHHH----HHHHHHHHHHhhCCCeEEEEecC
Q 028437           96 -DSDVVIIPAGVPRKPG----MTRDD---LFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 -~aD~Vi~~ag~~~~~g----~~r~~---~~~~N~~----~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                       ..|++|+++|....++    .+..+   .+..|..    ..+.+.+.+.+....+.++++|.
T Consensus        82 ~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS  144 (227)
T PRK08862         82 RAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS  144 (227)
T ss_pred             CCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence             6899999997432211    22222   2333433    33445555655443567777764

>PLN02712 arogenate dehydrogenase

Probab=97.30  E-value=0.0053  Score=58.36  Aligned_cols=66  Identities=21%  Similarity=0.255  Sum_probs=46.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC-CCCEEEEcC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPA  104 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~-~aD~Vi~~a  104 (209)
                      ..+|||+|||. |.+|..++..|...|+  +|+.+|++.......++   .    +..   ..++++.++ ++|+||++.
T Consensus       367 ~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~---G----v~~---~~~~~el~~~~aDvVILav  433 (667)
T PLN02712        367 GSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL---G----VSY---FSDADDLCEEHPEVILLCT  433 (667)
T ss_pred             CCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc---C----CeE---eCCHHHHHhcCCCEEEECC
Confidence            35579999998 9999999999999898  99999997421111111   1    111   135556564 589999995

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=97.30  E-value=0.0021  Score=48.96  Aligned_cols=113  Identities=19%  Similarity=0.170  Sum_probs=65.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--H---HHhhcCCCCCcceeEee-c---CCchhhhc------
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--V---AADVGHINTRSEVAGYM-G---NDQLGQAL------   94 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~---~~dl~~~~~~~~v~~~~-~---~~d~~~a~------   94 (209)
                      ++.|+||+|++|.+++..|.++|. ..|.+.++++...  .   ..++.....  .+..+. +   ..++++.+      
T Consensus         2 ~~li~Ga~~~iG~~~~~~l~~~g~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~   78 (180)
T smart00822        2 TYLITGGLGGLGLELARWLAERGA-RHLVLLSRSGPDAPGAAELLAELEALGA--EVTVVACDVADRAALAAALAAIPAR   78 (180)
T ss_pred             EEEEEcCCChHHHHHHHHHHHhhC-CeEEEEeCCCCCCccHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999998885 1577777753211  1   122222111  111111 0   11122222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        95 -~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                       ...|.+|+++|......   .+   ....+..|+.....+.+.+.+..+ .+++++|.
T Consensus        79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~ii~~ss  136 (180)
T smart00822       79 LGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPL-DFFVLFSS  136 (180)
T ss_pred             cCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCc-ceEEEEcc
Confidence             33699999998643111   11   234567788888888888865443 45666653

It uses NADPH to reduce the keto group to a hydroxy group.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.28  E-value=0.0014  Score=58.92  Aligned_cols=97  Identities=20%  Similarity=0.221  Sum_probs=58.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcC-CCCCcceeEeecCCchhhh-cCCCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-INTRSEVAGYMGNDQLGQA-LEDSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~-~~~~~~v~~~~~~~d~~~a-~~~aD~Vi~~ag~  106 (209)
                      |||.|+|+ |.+|..++..|...|+  +++++|+++..  ...+.. ...............++++ ++++|.||.+.+.
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~--~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~   75 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEER--LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS   75 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence            58999999 9999999999999998  99999997532  222222 1111000001011234555 7899999998531


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                                 ...|.    .++..+++.+|+..++..+
T Consensus        76 -----------~~~n~----~~~~~~r~~~~~~~ii~~~   99 (453)
T PRK09496         76 -----------DETNM----VACQIAKSLFGAPTTIARV   99 (453)
T ss_pred             -----------hHHHH----HHHHHHHHhcCCCeEEEEE
Confidence                       12343    2444455555665555544

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=97.28  E-value=0.0017  Score=59.96  Aligned_cols=68  Identities=25%  Similarity=0.364  Sum_probs=49.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .-..++|+|+|. |.+|+.++..|...|.  +|..+|+........++.       +..   .+++++.+++||+|+.+.
T Consensus       135 ~l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~l  201 (525)
T TIGR01327       135 ELYGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQLG-------VEL---VDDLDELLARADFITVHT  201 (525)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------CEE---cCCHHHHHhhCCEEEEcc
Confidence            334469999999 9999999999998898  999999843222222221       111   135788999999999986


Q ss_pred             C
Q 028437          105 G  105 (209)
Q Consensus       105 g  105 (209)
                      .
T Consensus       202 P  202 (525)
T TIGR01327       202 P  202 (525)
T ss_pred             C
Confidence            4

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=97.28  E-value=0.0015  Score=57.54  Aligned_cols=72  Identities=19%  Similarity=0.265  Sum_probs=46.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHH-hCCC-ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMK-LNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~-~~g~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      +||+|+||+|.||+.+...|. ++.+ ..+++++......+....+....  ..+..   .++ .+.++++|++++++|.
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~--~~v~~---~~~-~~~~~~vDivffa~g~   74 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTLQD---AFD-IDALKALDIIITCQGG   74 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCc--ceEEc---Ccc-cccccCCCEEEEcCCH
Confidence            489999999999999999888 5555 36788887643322222222211  12222   112 2468899999999863

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.28  E-value=0.019  Score=47.72  Aligned_cols=113  Identities=12%  Similarity=0.056  Sum_probs=64.0

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEecCCch-hHHHh----hcCCC-CCcceeEeecCCch-------hhh
Q 028437           29 RKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANTP-GVAAD----VGHIN-TRSEVAGYMGNDQL-------GQA   93 (209)
Q Consensus        29 ~kI~IiGas--G~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~d----l~~~~-~~~~v~~~~~~~d~-------~~a   93 (209)
                      +.++|+||+  +.+|..++..|++.|.  +|++.+++... ....+    +.... ..+++..   .++.       .+.
T Consensus        11 k~~lItGas~g~GIG~a~a~~la~~G~--~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~~   85 (258)
T PRK07533         11 KRGLVVGIANEQSIAWGCARAFRALGA--ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVRE---PGQLEAVFARIAEE   85 (258)
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCChhhHHHHHHHHHhhccceEEecCcCC---HHHHHHHHHHHHHH
Confidence            478899996  4899999999999998  99999986421 11112    21110 0111111   1112       122


Q ss_pred             cCCCCEEEEcCCCCCCC-------CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           94 LEDSDVVIIPAGVPRKP-------GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        94 ~~~aD~Vi~~ag~~~~~-------g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      +...|++|++||.....       ..+   ..+.+..|+.....+.+.+..+- ..+.++++|.
T Consensus        86 ~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss  149 (258)
T PRK07533         86 WGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSY  149 (258)
T ss_pred             cCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence            35679999999874310       112   23445667766665555544332 2356666654

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.26  E-value=0.002  Score=56.96  Aligned_cols=73  Identities=21%  Similarity=0.269  Sum_probs=44.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CC-ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLN-PL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~-g~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |++|+|+||||++|+.+...++.+ .+ ..++.++......+...++....  ..+..   ..+ .+.++++|+||++++
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~--~~v~~---~~~-~~~~~~~Divf~a~~   74 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKE--GTLQD---AFD-IDALKKLDIIITCQG   74 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCc--ceEEe---cCC-hhHhcCCCEEEECCC
Confidence            369999999999999999855554 44 34577776532212222222211  11111   122 245789999999975


Q ss_pred             C
Q 028437          106 V  106 (209)
Q Consensus       106 ~  106 (209)
                      .
T Consensus        75 ~   75 (369)
T PRK06598         75 G   75 (369)
T ss_pred             H
Confidence            3

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.26  E-value=0.0046  Score=50.33  Aligned_cols=115  Identities=20%  Similarity=0.235  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCc-------hhhhcCCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQ-------LGQALEDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d-------~~~a~~~aD~V  100 (209)
                      ..|+|+|++..||..++..+.+.|.  +|.+..|++.. ..+..... .....+-++.+.++       +.+..-+-+++
T Consensus         6 nTiLITGG~sGIGl~lak~f~elgN--~VIi~gR~e~~L~e~~~~~p-~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvl   82 (245)
T COG3967           6 NTILITGGASGIGLALAKRFLELGN--TVIICGRNEERLAEAKAENP-EIHTEVCDVADRDSRRELVEWLKKEYPNLNVL   82 (245)
T ss_pred             cEEEEeCCcchhhHHHHHHHHHhCC--EEEEecCcHHHHHHHHhcCc-chheeeecccchhhHHHHHHHHHhhCCchhee
Confidence            5899999999999999999999998  99999997521 11111111 11111111111111       22334577999


Q ss_pred             EEcCCCCCCCCCC--------hhHHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 028437          101 IIPAGVPRKPGMT--------RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       101 i~~ag~~~~~g~~--------r~~~~~~N~~----~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      |+.||..+..+..        -.+-+..|+.    .+..+.+.+.+ .|++.+|++|.-
T Consensus        83 iNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~-q~~a~IInVSSG  140 (245)
T COG3967          83 INNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLR-QPEATIINVSSG  140 (245)
T ss_pred             eecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHh-CCCceEEEeccc
Confidence            9999986543311        1223444544    44455555554 478999999753

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.24  E-value=0.036  Score=46.07  Aligned_cols=117  Identities=10%  Similarity=0.064  Sum_probs=64.3

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCC-CCCccee-EeecCCchh-------hhcCC
Q 028437           29 RKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHI-NTRSEVA-GYMGNDQLG-------QALED   96 (209)
Q Consensus        29 ~kI~IiGasG--~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~-~~~~~v~-~~~~~~d~~-------~a~~~   96 (209)
                      +.++|+||++  .+|..++..|++.|.  +|++.+++.. .....++... .....+. ++...++.+       +.+..
T Consensus         9 k~~lITGas~~~GIG~a~a~~la~~G~--~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   86 (260)
T PRK06603          9 KKGLITGIANNMSISWAIAQLAKKHGA--ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWGS   86 (260)
T ss_pred             cEEEEECCCCCcchHHHHHHHHHHcCC--EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4689999975  699999999999998  8999887631 1122223211 1000000 011111122       22456


Q ss_pred             CCEEEEcCCCCCC-----C--CCCh---hHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437           97 SDVVIIPAGVPRK-----P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus        97 aD~Vi~~ag~~~~-----~--g~~r---~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                      .|++|+.+|....     +  ..+.   ...+..|+.....+.+.+...- ..+.|+++|..
T Consensus        87 iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~  148 (260)
T PRK06603         87 FDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYY  148 (260)
T ss_pred             ccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecC
Confidence            8999999886421     1  1122   2345566665555555443322 34677777654

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.23  E-value=0.001  Score=58.31  Aligned_cols=74  Identities=26%  Similarity=0.337  Sum_probs=43.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEE-EEecCCchhH-HHh-hcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGV-AAD-VGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~-l~D~~~~~~~-~~d-l~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |||+|+||||++|..++..|.+.... ++. +++.+...++ ..+ ..+........ +. ..+.++..+++|+||++.+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~DvVf~alP   77 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLN-LE-PIDEEEIAEDADVVFLALP   77 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCce-ee-cCCHHHhhcCCCEEEECCC
Confidence            58999999999999999999877433 666 5576432222 111 11111000111 11 1133444568999999864

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.21  E-value=0.0017  Score=49.66  Aligned_cols=73  Identities=22%  Similarity=0.361  Sum_probs=49.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      .++|+|+|+ |.+|..++..|.+.| ..+|.++|+++...  ...++.....  ...    ..+.++.++++|+||.+..
T Consensus        19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~Dvvi~~~~   90 (155)
T cd01065          19 GKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELGI--AIA----YLDLEELLAEADLIINTTP   90 (155)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhccc--cee----ecchhhccccCCEEEeCcC
Confidence            468999999 999999999999886 23899999975322  1222222100  011    1245566899999999976


Q ss_pred             CCC
Q 028437          106 VPR  108 (209)
Q Consensus       106 ~~~  108 (209)
                      ...
T Consensus        91 ~~~   93 (155)
T cd01065          91 VGM   93 (155)
T ss_pred             CCC
Confidence            543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.21  E-value=0.0018  Score=48.77  Aligned_cols=34  Identities=26%  Similarity=0.517  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .||+|+|+ |.+|+.++..|+..|. +++.++|.+.
T Consensus         3 ~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~   36 (135)
T PF00899_consen    3 KRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDI   36 (135)
T ss_dssp             -EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred             CEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcc
Confidence            58999999 9999999999999997 6999999973

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.20  E-value=0.0014  Score=58.08  Aligned_cols=75  Identities=16%  Similarity=0.225  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ++.+|+|+|+ |.+|...+..+...|.  +|.++|+++...  ..+.... ...+. .....+++.+.++++|+||.+++
T Consensus       166 ~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~--~~l~~~~-g~~v~~~~~~~~~l~~~l~~aDvVI~a~~  239 (370)
T TIGR00518       166 EPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRL--RQLDAEF-GGRIHTRYSNAYEIEDAVKRADLLIGAVL  239 (370)
T ss_pred             CCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHH--HHHHHhc-CceeEeccCCHHHHHHHHccCCEEEEccc
Confidence            4568999999 9999999999999998  899999975221  1111110 00111 01112346778899999999986


Q ss_pred             CC
Q 028437          106 VP  107 (209)
Q Consensus       106 ~~  107 (209)
                      .+
T Consensus       240 ~~  241 (370)
T TIGR00518       240 IP  241 (370)
T ss_pred             cC
Confidence            54

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=97.20  E-value=0.0047  Score=53.60  Aligned_cols=129  Identities=17%  Similarity=0.346  Sum_probs=73.5

Q ss_pred             cccCCCCCCCeEEEEcCCCchHHHHHHHHHhC----C-CccEEEEEecCCc-hh---HHHhh-cC--CC--------CCc
Q 028437           20 GYSSESVPDRKVAVLGAAGGIGQPLALLMKLN----P-LVSRLALYDIANT-PG---VAADV-GH--IN--------TRS   79 (209)
Q Consensus        20 ~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~----g-~~~ev~l~D~~~~-~~---~~~dl-~~--~~--------~~~   79 (209)
                      ..-+....+.||+|+|+ |..|++++..+...    . +-.+|.++-..+. .+   ...|. +.  ..        .+.
T Consensus        13 ~~~~~~~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~   91 (372)
T KOG2711|consen   13 NLGKAERDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPE   91 (372)
T ss_pred             ccCchhcCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCC
Confidence            33344445679999998 99999999876543    1 1347777776531 11   11111 11  11        122


Q ss_pred             ceeEeecCCchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCC-----cHH
Q 028437           80 EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS-----TVP  153 (209)
Q Consensus        80 ~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~-----~~~  153 (209)
                      .+..   .+|+.+++++||++|+..  |.              +++.++++++..+- |++..|-.+.-..+     ..-
T Consensus        92 NvvA---v~dl~ea~~dADilvf~v--Ph--------------Qf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~  152 (372)
T KOG2711|consen   92 NVVA---VPDLVEAAKDADILVFVV--PH--------------QFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIR  152 (372)
T ss_pred             CeEe---cchHHHHhccCCEEEEeC--Ch--------------hhHHHHHHHHhcccCCCCeEEEeecceeccCCCCcee
Confidence            3332   468999999999999984  21              34456667776654 45554444322221     012


Q ss_pred             HHHHHHHHhCCCCCC
Q 028437          154 IAAEVFKKAGTYNEK  168 (209)
Q Consensus       154 i~~~~~~~~~~~p~~  168 (209)
                      +++++..+..++|-.
T Consensus       153 liS~iI~~~lgI~~~  167 (372)
T KOG2711|consen  153 LISQIIHRALGIPCS  167 (372)
T ss_pred             ehHHHHHHHhCCCce
Confidence            556666665555543

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.20  E-value=0.0095  Score=51.60  Aligned_cols=115  Identities=18%  Similarity=0.171  Sum_probs=71.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-c----------CCchhhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-G----------NDQLGQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~----------~~d~~~a~~   95 (209)
                      ..+.||||+..+|..++..|+.+|.  +|++..|+..  .....++........+.... +          .+.++....
T Consensus        36 ~~~vVTGansGIG~eta~~La~~Ga--~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~~~  113 (314)
T KOG1208|consen   36 KVALVTGATSGIGFETARELALRGA--HVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKKEG  113 (314)
T ss_pred             cEEEEECCCCchHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhcCC
Confidence            4788999999999999999999997  9999999852  22233444421111111100 0          112233345


Q ss_pred             CCCEEEEcCCCCCCCCC---C-hhHHHHHH----HHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPGM---T-RDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g~---~-r~~~~~~N----~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      .-|+.|+.||+...+..   + .+..+..|    .-.+..+.+.+++..| .+||++|.
T Consensus       114 ~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~-~RIV~vsS  171 (314)
T KOG1208|consen  114 PLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAP-SRIVNVSS  171 (314)
T ss_pred             CccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCC-CCEEEEcC
Confidence            77999999998653332   1 11223344    3456677777776656 78888865

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.20  E-value=0.0031  Score=55.48  Aligned_cols=114  Identities=18%  Similarity=0.146  Sum_probs=66.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hh--H---HHh-hc--CCCCCcceeEeec----------CC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PG--V---AAD-VG--HINTRSEVAGYMG----------ND   88 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~--~---~~d-l~--~~~~~~~v~~~~~----------~~   88 (209)
                      ++|.+||||||+|..++.+|+.+-.. +|++.-|-..  .+  .   ..+ ..  +.....+++.+.+          ..
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~-kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~   79 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDA-KVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSER   79 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCC-cEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHH
Confidence            37999999999999999999887653 6666655321  11  1   111 00  0111123333221          12


Q ss_pred             chhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        89 d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ++.+-.++.|.|||++.... .-.+..++...|+..+.++++.+..--+.. ++++|
T Consensus        80 ~~~~La~~vD~I~H~gA~Vn-~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp-~~yVS  134 (382)
T COG3320          80 TWQELAENVDLIIHNAALVN-HVFPYSELRGANVLGTAEVLRLAATGKPKP-LHYVS  134 (382)
T ss_pred             HHHHHhhhcceEEecchhhc-ccCcHHHhcCcchHhHHHHHHHHhcCCCce-eEEEe
Confidence            34444567999999976432 112234566789999999999876532332 55554

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=97.19  E-value=0.0025  Score=58.45  Aligned_cols=69  Identities=16%  Similarity=0.205  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC----CCCcceeEeecCCchhhhcC---CCCE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----NTRSEVAGYMGNDQLGQALE---DSDV   99 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~----~~~~~v~~~~~~~d~~~a~~---~aD~   99 (209)
                      ++++|.++|- |.+|.+++..|+..|+  +|.++|+++.+  ..++.+.    ... .+..   ..+++++.+   .+|+
T Consensus         5 ~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k--~~~l~~~~~~~Ga~-~~~~---a~s~~e~v~~l~~~dv   75 (493)
T PLN02350          5 ALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSK--VDETVERAKKEGNL-PLYG---FKDPEDFVLSIQKPRS   75 (493)
T ss_pred             CCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHhhhhcCCc-cccc---CCCHHHHHhcCCCCCE
Confidence            4468999998 9999999999999999  99999997532  2222221    110 1111   234555555   4999


Q ss_pred             EEEcC
Q 028437          100 VIIPA  104 (209)
Q Consensus       100 Vi~~a  104 (209)
                      ||.+.
T Consensus        76 Ii~~v   80 (493)
T PLN02350         76 VIILV   80 (493)
T ss_pred             EEEEC
Confidence            99985

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.19  E-value=0.0034  Score=51.31  Aligned_cols=33  Identities=33%  Similarity=0.596  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      .||+|+|+ |.+|+.++..|+..|. ++++++|.|
T Consensus        29 ~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D   61 (212)
T PRK08644         29 AKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFD   61 (212)
T ss_pred             CCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            48999999 9999999999999997 589999997

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=97.19  E-value=0.0051  Score=53.10  Aligned_cols=97  Identities=20%  Similarity=0.286  Sum_probs=62.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC-----Cc--ceeEeecCCchhhhcCCCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----RS--EVAGYMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~-----~~--~v~~~~~~~d~~~a~~~aD~Vi  101 (209)
                      |||+|+|+ |-+|+-++..|.+.|.  +|.++.+++.   ...+.....     ..  ..... .+.+ .+....+|+||
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~---~~~l~~~GL~i~~~~~~~~~~~~-~~~~-~~~~~~~Dlvi   72 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRR---LEALKKKGLRIEDEGGNFTTPVV-AATD-AEALGPADLVI   72 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHH---HHHHHhCCeEEecCCCccccccc-cccC-hhhcCCCCEEE
Confidence            69999999 9999999999999996  8888888642   112222110     00  01111 1122 45667999999


Q ss_pred             EcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 028437          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (209)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~  149 (209)
                      ++.-..+                ..+.++.+..+. ++.+++..=|-.+
T Consensus        73 v~vKa~q----------------~~~al~~l~~~~~~~t~vl~lqNG~g  105 (307)
T COG1893          73 VTVKAYQ----------------LEEALPSLAPLLGPNTVVLFLQNGLG  105 (307)
T ss_pred             EEecccc----------------HHHHHHHhhhcCCCCcEEEEEeCCCc
Confidence            9953221                245556666665 5667888888877

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=97.18  E-value=0.0027  Score=53.90  Aligned_cols=101  Identities=25%  Similarity=0.348  Sum_probs=69.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC----CCc-----cEEEEEecCCc--------hhHHHhhcCCCCCcceeEeecCCch
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLN----PLV-----SRLALYDIANT--------PGVAADVGHINTRSEVAGYMGNDQL   90 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~----g~~-----~ev~l~D~~~~--------~~~~~dl~~~~~~~~v~~~~~~~d~   90 (209)
                      ..||++.|| |..|..++..|...    |+-     .+++++|++-.        .....++.+..  .. .   ...++
T Consensus        25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~--~~-~---~~~~L   97 (279)
T cd05312          25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD--EE-K---EGKSL   97 (279)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc--Cc-c---cCCCH
Confidence            359999999 99999998877654    652     58999999631        11111122211  00 0   12478


Q ss_pred             hhhcC--CCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437           91 GQALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus        91 ~~a~~--~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      +++++  ++|++|=+.+.+   |           -+.+++++.|.++++..+|.-.|||..
T Consensus        98 ~e~i~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~  144 (279)
T cd05312          98 LEVVKAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKSNERPIIFALSNPTS  144 (279)
T ss_pred             HHHHHhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence            99999  889998876543   2           234788899999998888888899975

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.16  E-value=0.028  Score=46.70  Aligned_cols=33  Identities=18%  Similarity=0.191  Sum_probs=29.3

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGas--G~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      +.++|+||+  +.+|..++..|++.|.  +|++.+++
T Consensus         8 k~~lItGa~~s~GIG~aia~~la~~G~--~v~~~~r~   42 (257)
T PRK08594          8 KTYVVMGVANKRSIAWGIARSLHNAGA--KLVFTYAG   42 (257)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEecCc
Confidence            478999996  7999999999999998  99998764

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.16  E-value=0.0097  Score=49.26  Aligned_cols=32  Identities=16%  Similarity=0.189  Sum_probs=27.9

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEec
Q 028437           29 RKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDI   62 (209)
Q Consensus        29 ~kI~IiGasG--~vG~~la~~L~~~g~~~ev~l~D~   62 (209)
                      ++|+|+||+|  .+|.+++..|++.|.  +|++.++
T Consensus         7 k~vlVtGas~~~giG~~~a~~l~~~G~--~vi~~~~   40 (256)
T PRK12859          7 KVAVVTGVSRLDGIGAAICKELAEAGA--DIFFTYW   40 (256)
T ss_pred             cEEEEECCCCCCChHHHHHHHHHHCCC--eEEEEec
Confidence            4899999974  799999999999998  8888753

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=97.16  E-value=0.0025  Score=55.42  Aligned_cols=66  Identities=23%  Similarity=0.337  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ..+++.|+|. |.||+.++..|..-|.  +|..||+........  ....     ..   ..++++.++.||+|++...
T Consensus       141 ~gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~--~~~~-----~~---~~~Ld~lL~~sDiv~lh~P  206 (324)
T COG0111         141 AGKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG--VDGV-----VG---VDSLDELLAEADILTLHLP  206 (324)
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc--cccc-----ee---cccHHHHHhhCCEEEEcCC
Confidence            3469999999 9999999999999999  999999943211111  1110     00   1357888999999998753

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.15  E-value=0.035  Score=46.62  Aligned_cols=113  Identities=12%  Similarity=0.126  Sum_probs=64.9

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCC-C----CCcceeEeecCCch-------hhh
Q 028437           29 RKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHI-N----TRSEVAGYMGNDQL-------GQA   93 (209)
Q Consensus        29 ~kI~IiGas--G~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~-~----~~~~v~~~~~~~d~-------~~a   93 (209)
                      +.++|+||+  +.+|..++..|++.|.  +|++.+++.. .....++... .    ...++..   .++.       .+.
T Consensus        11 k~~lItGas~~~GIG~aia~~la~~G~--~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~---~~~v~~~~~~~~~~   85 (272)
T PRK08159         11 KRGLILGVANNRSIAWGIAKACRAAGA--ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTD---EASIDAVFETLEKK   85 (272)
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCC---HHHHHHHHHHHHHh
Confidence            479999996  6899999999999999  9988877521 1112222111 1    0111111   1112       222


Q ss_pred             cCCCCEEEEcCCCCCC-----C--CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           94 LEDSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        94 ~~~aD~Vi~~ag~~~~-----~--g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      +...|++|+.||....     +  ..+   ....+..|+.....+.+.+.+.- ..+.++++|.
T Consensus        86 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss  149 (272)
T PRK08159         86 WGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTY  149 (272)
T ss_pred             cCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            3467999999987531     1  122   23345677766666666555432 2466776664

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.15  E-value=0.0033  Score=52.83  Aligned_cols=60  Identities=12%  Similarity=0.229  Sum_probs=42.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCc--cEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~--~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||+|+|+ |.+|++++..|.+.+..  .+++.+|+++..     +   .    ...   ..+..++++++|+||++.
T Consensus         4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~---~----~~~---~~~~~~~~~~~D~Vilav   65 (260)
T PTZ00431          4 IRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T---P----FVY---LQSNEELAKTCDIIVLAV   65 (260)
T ss_pred             CEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C---C----eEE---eCChHHHHHhCCEEEEEe
Confidence            69999999 99999999999988742  258888875321     1   0    111   123456678999999984

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.15  E-value=0.01  Score=49.95  Aligned_cols=116  Identities=14%  Similarity=0.119  Sum_probs=63.9

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCC-CCCccee-EeecCCchh-------hhcCC
Q 028437           29 RKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHI-NTRSEVA-GYMGNDQLG-------QALED   96 (209)
Q Consensus        29 ~kI~IiGas--G~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~-~~~~~v~-~~~~~~d~~-------~a~~~   96 (209)
                      +.++|+||+  +.+|..++..|++.|.  +|++.+++.. .....++... .....+. ++...++.+       +.+..
T Consensus         6 k~~lItGas~~~GIG~aiA~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g~   83 (274)
T PRK08415          6 KKGLIVGVANNKSIAYGIAKACFEQGA--ELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLGK   83 (274)
T ss_pred             cEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            478999996  6899999999999998  9999998631 1111222111 1000010 011111111       22356


Q ss_pred             CCEEEEcCCCCCC-----C--CCCh---hHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           97 SDVVIIPAGVPRK-----P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~-----~--g~~r---~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      .|++|+.||....     +  ..+.   ...+..|+.....+.+.+...- ..+.|+++|.
T Consensus        84 iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS  144 (274)
T PRK08415         84 IDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSY  144 (274)
T ss_pred             CCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEec
Confidence            7999999997421     1  1222   2346677665555554444322 2456777653

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=97.14  E-value=0.0036  Score=54.50  Aligned_cols=65  Identities=18%  Similarity=0.170  Sum_probs=46.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .++|+|+|. |.+|.+++..|...|+  +|++.+++....... ......    ..    .+.++++++||+|+++.
T Consensus        17 gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~~~-A~~~G~----~~----~s~~eaa~~ADVVvLaV   81 (330)
T PRK05479         17 GKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSWKK-AEADGF----EV----LTVAEAAKWADVIMILL   81 (330)
T ss_pred             CCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhHHH-HHHCCC----ee----CCHHHHHhcCCEEEEcC
Confidence            358999999 9999999999999998  888887753211111 111111    11    25678899999999995

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.14  E-value=0.0023  Score=46.57  Aligned_cols=95  Identities=18%  Similarity=0.222  Sum_probs=57.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeE-eecCCch-hhhcCCCCEEEEcCCCCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQL-GQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~-~~a~~~aD~Vi~~ag~~~  108 (209)
                      |.|+|. |.+|..++..|.+.+.  +++++|.++..  ...+...... .+.+ ......+ +..+++||.|+.+.+.  
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~--~vvvid~d~~~--~~~~~~~~~~-~i~gd~~~~~~l~~a~i~~a~~vv~~~~~--   72 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGI--DVVVIDRDPER--VEELREEGVE-VIYGDATDPEVLERAGIEKADAVVILTDD--   72 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTS--EEEEEESSHHH--HHHHHHTTSE-EEES-TTSHHHHHHTTGGCESEEEEESSS--
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCC--EEEEEECCcHH--HHHHHhcccc-cccccchhhhHHhhcCccccCEEEEccCC--
Confidence            679999 9999999999999776  99999998532  2222222211 1111 0000112 2346789999998531  


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       109 ~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                               -..|    ..++..+++.+|+.+++...+
T Consensus        73 ---------d~~n----~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   73 ---------DEEN----LLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             ---------HHHH----HHHHHHHHHHTTTSEEEEEES
T ss_pred             ---------HHHH----HHHHHHHHHHCCCCeEEEEEC
Confidence                     1344    355566677788776665554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.13  E-value=0.0015  Score=51.10  Aligned_cols=69  Identities=25%  Similarity=0.418  Sum_probs=44.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +..-++++|+|- |.+|+.+|..|...|.  .|.++|+||......-+...    .+      .+++++++.+|++|.+.
T Consensus        20 ~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga--~V~V~e~DPi~alqA~~dGf----~v------~~~~~a~~~adi~vtaT   86 (162)
T PF00670_consen   20 MLAGKRVVVIGY-GKVGKGIARALRGLGA--RVTVTEIDPIRALQAAMDGF----EV------MTLEEALRDADIFVTAT   86 (162)
T ss_dssp             --TTSEEEEE---SHHHHHHHHHHHHTT---EEEEE-SSHHHHHHHHHTT-----EE------E-HHHHTTT-SEEEE-S
T ss_pred             eeCCCEEEEeCC-CcccHHHHHHHhhCCC--EEEEEECChHHHHHhhhcCc----Ee------cCHHHHHhhCCEEEECC
Confidence            334458999999 9999999999999998  99999999743322212111    11      24688999999999886


Q ss_pred             CC
Q 028437          105 GV  106 (209)
Q Consensus       105 g~  106 (209)
                      |.
T Consensus        87 G~   88 (162)
T PF00670_consen   87 GN   88 (162)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.12  E-value=0.025  Score=47.34  Aligned_cols=116  Identities=15%  Similarity=0.157  Sum_probs=62.6

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCc-cee-EeecCCchhh-------hcCC
Q 028437           29 RKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRS-EVA-GYMGNDQLGQ-------ALED   96 (209)
Q Consensus        29 ~kI~IiGasG--~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~-~v~-~~~~~~d~~~-------a~~~   96 (209)
                      +.++|+||++  .+|..++..|++.|.  .|++.+++.. .....++....... .+. ++...++.++       .+..
T Consensus         7 k~~lITGas~~~GIG~aia~~la~~G~--~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   84 (262)
T PRK07984          7 KRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWPK   84 (262)
T ss_pred             CEEEEeCCCCCccHHHHHHHHHHHCCC--EEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcCC
Confidence            4789999964  799999999999998  8999888531 12223332211000 000 0111112222       2345


Q ss_pred             CCEEEEcCCCCCCC--------CCChh---HHHHHHHHHHHHHHHHHHhh-CCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKP--------GMTRD---DLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~--------g~~r~---~~~~~N~~~~~~i~~~i~~~-~p~~~viv~sn  146 (209)
                      .|++|++||.....        ..+.+   ..+..|+.....+.+.+... .+.+.++++|.
T Consensus        85 iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss  146 (262)
T PRK07984         85 FDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY  146 (262)
T ss_pred             CCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            79999999864311        11222   23455665444444443322 23466777764

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.12  E-value=0.0024  Score=59.34  Aligned_cols=94  Identities=12%  Similarity=0.191  Sum_probs=59.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCc---hh-hhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LG-QALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~-~a~~~aD~Vi~~a  104 (209)
                      .+|.|+|+ |.+|+.++..|.++|+  +++++|.|+.  ...++.+.+... +.+  +.+|   ++ .-++++|.++.+.
T Consensus       418 ~hiiI~G~-G~~G~~la~~L~~~g~--~vvvId~d~~--~~~~~~~~g~~~-i~G--D~~~~~~L~~a~i~~a~~viv~~  489 (558)
T PRK10669        418 NHALLVGY-GRVGSLLGEKLLAAGI--PLVVIETSRT--RVDELRERGIRA-VLG--NAANEEIMQLAHLDCARWLLLTI  489 (558)
T ss_pred             CCEEEECC-ChHHHHHHHHHHHCCC--CEEEEECCHH--HHHHHHHCCCeE-EEc--CCCCHHHHHhcCccccCEEEEEc
Confidence            58999999 9999999999999999  9999999853  233333332211 111  1122   22 2356889888874


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +..           .+|.    +++..+++.+|+.+++.-.
T Consensus       490 ~~~-----------~~~~----~iv~~~~~~~~~~~iiar~  515 (558)
T PRK10669        490 PNG-----------YEAG----EIVASAREKRPDIEIIARA  515 (558)
T ss_pred             CCh-----------HHHH----HHHHHHHHHCCCCeEEEEE
Confidence            211           2333    3445556667887666554

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.12  E-value=0.0013  Score=57.14  Aligned_cols=74  Identities=27%  Similarity=0.303  Sum_probs=45.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCC--cceeEeecCCchhh-hcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR--SEVAGYMGNDQLGQ-ALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~--~~v~~~~~~~d~~~-a~~~aD~Vi~~a  104 (209)
                      |+||+|+||+|+.|..|...|.....+ |+.++...+..++...-.+....  ..+...  +.|.++ ..++||+||.+.
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFlal   78 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLAL   78 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEec
Confidence            679999999999999999999998765 68888765433322211222111  111111  112233 355699999984

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.12  E-value=0.0028  Score=58.59  Aligned_cols=68  Identities=22%  Similarity=0.333  Sum_probs=49.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .-..++|+|+|. |.+|+.++..|...|.  +|+.+|+........++   .    +..    .++++.+++||+|+.+.
T Consensus       137 ~l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDiV~l~l  202 (526)
T PRK13581        137 ELYGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL---G----VEL----VSLDELLARADFITLHT  202 (526)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc---C----CEE----EcHHHHHhhCCEEEEcc
Confidence            344569999999 9999999999999998  99999985322221111   1    111    14788899999999986


Q ss_pred             CC
Q 028437          105 GV  106 (209)
Q Consensus       105 g~  106 (209)
                      ..
T Consensus       203 P~  204 (526)
T PRK13581        203 PL  204 (526)
T ss_pred             CC
Confidence            43

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.11  E-value=0.003  Score=51.17  Aligned_cols=33  Identities=30%  Similarity=0.570  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      .||+|+|+ |.+|+.++..|+..|. ++++++|.+
T Consensus        22 ~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d   54 (202)
T TIGR02356        22 SHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDD   54 (202)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCC
Confidence            48999999 9999999999999996 699999997

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PLN03139 formate dehydrogenase; Provisional

Probab=97.10  E-value=0.006  Score=54.32  Aligned_cols=67  Identities=24%  Similarity=0.260  Sum_probs=48.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      -..++|+|+|. |.||+.++..|..-|.  +|..+|+........  .+..    +..   ..++++.+++||+|+++.
T Consensus       197 L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~g----~~~---~~~l~ell~~sDvV~l~l  263 (386)
T PLN03139        197 LEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KETG----AKF---EEDLDAMLPKCDVVVINT  263 (386)
T ss_pred             CCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhcC----cee---cCCHHHHHhhCCEEEEeC
Confidence            44569999999 9999999999998888  999999864211111  1111    111   136788999999999985

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.10  E-value=0.0063  Score=52.53  Aligned_cols=98  Identities=21%  Similarity=0.353  Sum_probs=62.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +.++|+|+|+ |.+|..++..|...|. .+|.++++++.+.  .+..+..     ....   .+++++++.++|+||.+.
T Consensus       177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g~-----~~~~---~~~~~~~l~~aDvVi~at  246 (311)
T cd05213         177 KGKKVLVIGA-GEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELGG-----NAVP---LDELLELLNEADVVISAT  246 (311)
T ss_pred             cCCEEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcCC-----eEEe---HHHHHHHHhcCCEEEECC
Confidence            4569999999 9999999998887653 3899999975322  2222221     1111   135677889999999998


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHH-HHhh-CCCeEEEEecCCCCC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSA-IAKY-CPNAIVNMISNPVNS  150 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~-i~~~-~p~~~viv~snP~~~  150 (209)
                      +.+..                .++.+. ++.. .+...++=+++|-+.
T Consensus       247 ~~~~~----------------~~~~~~~~~~~~~~~~~viDlavPrdi  278 (311)
T cd05213         247 GAPHY----------------AKIVERAMKKRSGKPRLIVDLAVPRDI  278 (311)
T ss_pred             CCCch----------------HHHHHHHHhhCCCCCeEEEEeCCCCCC
Confidence            76531                111122 2211 245678888999883

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=97.09  E-value=0.0041  Score=51.48  Aligned_cols=33  Identities=24%  Similarity=0.244  Sum_probs=29.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHh----CCCccEEEEEecCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKL----NPLVSRLALYDIAN   64 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~----~g~~~ev~l~D~~~   64 (209)
                      .++|+||++.+|..++..|++    .|.  .|++.++++
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~--~V~~~~r~~   38 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGS--VLVLSARND   38 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCc--EEEEEEcCH
Confidence            478999999999999999986    677  999999874

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.09  E-value=0.084  Score=43.89  Aligned_cols=33  Identities=18%  Similarity=0.226  Sum_probs=28.5

Q ss_pred             CeEEEEcC--CCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGA--AGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGa--sG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      +.++|+||  ++.+|..++..|++.|.  +|++.+++
T Consensus         7 k~~lITGa~~~~GIG~a~a~~l~~~G~--~v~~~~~~   41 (261)
T PRK08690          7 KKILITGMISERSIAYGIAKACREQGA--ELAFTYVV   41 (261)
T ss_pred             cEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCc
Confidence            47999996  56899999999999998  88887664

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=97.08  E-value=0.005  Score=53.30  Aligned_cols=56  Identities=9%  Similarity=0.057  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHhCCCccEEEEEecCCch---hHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           40 IGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        40 vG~~la~~L~~~g~~~ev~l~D~~~~~---~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      -|+++|..|++.|+  +|+++|+++..   .....+.+...    ..   .++..++.+++|+||.+.
T Consensus        31 gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA----~~---AaS~aEAAa~ADVVIL~L   89 (341)
T TIGR01724        31 GGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV----KV---VSDDKEAAKHGEIHVLFT   89 (341)
T ss_pred             CHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC----ee---cCCHHHHHhCCCEEEEec
Confidence            48899999999999  99999986421   12223443321    11   235678999999999995

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=97.07  E-value=0.0086  Score=48.45  Aligned_cols=147  Identities=22%  Similarity=0.264  Sum_probs=85.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCC----CCcceeEeecC----CchhhhcCCCCE
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN----TRSEVAGYMGN----DQLGQALEDSDV   99 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~----~~~~v~~~~~~----~d~~~a~~~aD~   99 (209)
                      ...|+|++..||++++..|...|.  .|...|.+..  ++.+.+|....    +.+++..-.+.    +..++.+---++
T Consensus        16 ~~~vtGg~sGIGrAia~~la~~Ga--rv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~psv   93 (256)
T KOG1200|consen   16 VAAVTGGSSGIGRAIAQLLAKKGA--RVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTPSV   93 (256)
T ss_pred             eeEEecCCchHHHHHHHHHHhcCc--EEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCCcE
Confidence            677999988999999999999999  9999999853  33445555432    22222211000    112233445699


Q ss_pred             EEEcCCCCCCCC------CChhHHHHHHHHHHHHHHHHHHh----hC-CCeEEEEecCCCCCcHHHHHHHHHHhCCC--C
Q 028437          100 VIIPAGVPRKPG------MTRDDLFNINAGIVKDLCSAIAK----YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTY--N  166 (209)
Q Consensus       100 Vi~~ag~~~~~g------~~r~~~~~~N~~~~~~i~~~i~~----~~-p~~~viv~snP~~~~~~i~~~~~~~~~~~--p  166 (209)
                      +|+|||..+..-      .+..+.+..|+..+-.+.++..+    .. ....||++|.-++.    +.-.-+  ++|  .
T Consensus        94 lVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGk----iGN~GQ--tnYAAs  167 (256)
T KOG1200|consen   94 LVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGK----IGNFGQ--TNYAAS  167 (256)
T ss_pred             EEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcc----cccccc--hhhhhh
Confidence            999999876432      13455677787665544444333    22 33478888866652    211111  012  2


Q ss_pred             CCcEEEEehhhHHHHHHHHHHH
Q 028437          167 EKKLFGVTTLDVVRAKTFYAGK  188 (209)
Q Consensus       167 ~~~vig~~~lds~r~~~~la~~  188 (209)
                      +.-+||++.-    +.+.+|++
T Consensus       168 K~GvIgftkt----aArEla~k  185 (256)
T KOG1200|consen  168 KGGVIGFTKT----AARELARK  185 (256)
T ss_pred             cCceeeeeHH----HHHHHhhc
Confidence            4458898752    23556554

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=97.07  E-value=0.0062  Score=55.22  Aligned_cols=126  Identities=16%  Similarity=0.254  Sum_probs=70.3

Q ss_pred             CCCCCeEEEEcCCCchHHH-HHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           25 SVPDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~-la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      +.+.++|.|+|. |..|.+ ++..|.+.|+  +|.+.|.+... ...+|....    +..+. ..+ .+.++++|+||.+
T Consensus         4 ~~~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~g----i~~~~-~~~-~~~~~~~d~vv~s   73 (461)
T PRK00421          4 LRRIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLELG----AIIFI-GHD-AENIKDADVVVYS   73 (461)
T ss_pred             cCCCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHCC----CEEeC-CCC-HHHCCCCCEEEEC
Confidence            344568999999 999999 7999999999  99999986432 222343322    11111 112 3557789999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC--CcHHHHHHHHHHh
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKA  162 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~--~~~~i~~~~~~~~  162 (209)
                      -|.+...-. .......+++++.+. +.+.+..++.++|-+|...+  +++.++..+++..
T Consensus        74 pgi~~~~~~-~~~a~~~~i~i~~~~-e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~  132 (461)
T PRK00421         74 SAIPDDNPE-LVAARELGIPVVRRA-EMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEA  132 (461)
T ss_pred             CCCCCCCHH-HHHHHHCCCcEEeHH-HHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence            888742110 111112233332221 11222222224566665543  2346666666554

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=97.06  E-value=0.024  Score=47.14  Aligned_cols=33  Identities=21%  Similarity=0.223  Sum_probs=28.3

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGas--G~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      +.++|+||+  +.+|..++..|++.|.  +|++.+++
T Consensus         7 k~~lItGas~~~GIG~aia~~la~~G~--~v~~~~~~   41 (258)
T PRK07370          7 KKALVTGIANNRSIAWGIAQQLHAAGA--ELGITYLP   41 (258)
T ss_pred             cEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEEecC
Confidence            478999985  6899999999999998  88887653

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.06  E-value=0.0041  Score=56.58  Aligned_cols=67  Identities=19%  Similarity=0.253  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ...+|+|+|. |.+|+.++..|...|.  +|+++|+++....... .+ .+    ..    .+++++++++|+|+.+.|.
T Consensus       253 aGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~-~~-G~----~~----~~leell~~ADIVI~atGt  319 (476)
T PTZ00075        253 AGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAA-ME-GY----QV----VTLEDVVETADIFVTATGN  319 (476)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHH-hc-Cc----ee----ccHHHHHhcCCEEEECCCc
Confidence            3459999999 9999999999999998  9999988763221111 11 11    11    2467889999999998764

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=97.05  E-value=0.0028  Score=54.10  Aligned_cols=68  Identities=24%  Similarity=0.412  Sum_probs=52.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      .++|..||- |.+|++++..|+..||  .|++||++..  ...++.+....  +.     .++.|..+++|+||.+.+.+
T Consensus        35 ~~~iGFIGL-G~MG~~M~~nLik~G~--kVtV~dr~~~--k~~~f~~~Ga~--v~-----~sPaeVae~sDvvitmv~~~  102 (327)
T KOG0409|consen   35 KTRIGFIGL-GNMGSAMVSNLIKAGY--KVTVYDRTKD--KCKEFQEAGAR--VA-----NSPAEVAEDSDVVITMVPNP  102 (327)
T ss_pred             cceeeEEee-ccchHHHHHHHHHcCC--EEEEEeCcHH--HHHHHHHhchh--hh-----CCHHHHHhhcCEEEEEcCCh
Confidence            479999998 9999999999999999  9999999742  44455555421  11     24578889999999987643

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=97.05  E-value=0.015  Score=55.71  Aligned_cols=69  Identities=20%  Similarity=0.299  Sum_probs=47.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      .||+|+|+ |.+|..++..|.+.|+..+|+++|+++...  ....+....  ..   ..++++++++++|+||++..
T Consensus         4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~--~~a~~~g~~--~~---~~~~~~~~~~~aDvVilavp   72 (735)
T PRK14806          4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSL--ELAVSLGVI--DR---GEEDLAEAVSGADVIVLAVP   72 (735)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHH--HHHHHCCCC--Cc---ccCCHHHHhcCCCEEEECCC
Confidence            58999998 999999999999988433899999975321  111111110  00   12356778899999999863

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.05  E-value=0.0058  Score=51.55  Aligned_cols=69  Identities=20%  Similarity=0.249  Sum_probs=44.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g-~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ||||+|+|. |.+|..++..+.+.+ ...-+.++|+++..  ..++.+. ..  ...+   +++++.+.++|+|++++.
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~--a~~~a~~-~~--~~~~---~~~~ell~~~DvVvi~a~   70 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEK--AENLASK-TG--AKAC---LSIDELVEDVDLVVECAS   70 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHH--HHHHHHh-cC--CeeE---CCHHHHhcCCCEEEEcCC
Confidence            469999999 999999999888764 22235577876422  2222221 11  1111   356676789999999974

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=97.04  E-value=0.0041  Score=54.04  Aligned_cols=66  Identities=20%  Similarity=0.200  Sum_probs=46.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHH-hCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~-~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      -..++++|+|. |.||+.++..+. .-|.  +|..+|+........+..       ...    .++++.+++||+|++..
T Consensus       143 L~gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~~-------~~~----~~l~ell~~sDvv~lh~  208 (323)
T PRK15409        143 VHHKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHKEAEERFN-------ARY----CDLDTLLQESDFVCIIL  208 (323)
T ss_pred             CCCCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhcC-------cEe----cCHHHHHHhCCEEEEeC
Confidence            34469999999 999999999887 6677  999888753211111111       111    25788999999999985


Q ss_pred             C
Q 028437          105 G  105 (209)
Q Consensus       105 g  105 (209)
                      .
T Consensus       209 p  209 (323)
T PRK15409        209 P  209 (323)
T ss_pred             C
Confidence            4

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=97.03  E-value=0.0038  Score=53.12  Aligned_cols=61  Identities=18%  Similarity=0.261  Sum_probs=44.9

Q ss_pred             EEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        33 IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ++|. |.+|..++..|+..|+  +|.++|+++.  ...++.....    ..   +.+..++++++|+||++..
T Consensus         1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~--~~~~l~~~g~----~~---~~s~~~~~~~advVil~vp   61 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPD--AVEEAVAAGA----QA---AASPAEAAEGADRVITMLP   61 (288)
T ss_pred             CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHH--HHHHHHHcCC----ee---cCCHHHHHhcCCEEEEeCC
Confidence            4788 9999999999999999  9999999753  2223332221    11   2356788999999999964

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.02  E-value=0.0087  Score=53.70  Aligned_cols=66  Identities=17%  Similarity=0.234  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      .-.+|+|+|+ |.+|..++..+...|.  +|+++|+++.+. .+..+   .+    ..    .+.+++++++|+||.+.|
T Consensus       201 ~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~---G~----~~----~~~~e~v~~aDVVI~atG  266 (413)
T cd00401         201 AGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAME---GY----EV----MTMEEAVKEGDIFVTTTG  266 (413)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhc---CC----EE----ccHHHHHcCCCEEEECCC
Confidence            3469999999 9999999999999998  899999976322 22211   11    11    124577889999999875


Q ss_pred             C
Q 028437          106 V  106 (209)
Q Consensus       106 ~  106 (209)
                      .
T Consensus       267 ~  267 (413)
T cd00401         267 N  267 (413)
T ss_pred             C
Confidence            3

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=97.02  E-value=0.00074  Score=56.55  Aligned_cols=99  Identities=21%  Similarity=0.246  Sum_probs=69.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC----CC-----ccEEEEEecCCc----h----hHHHh---hcCCCCCcceeEeecC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLN----PL-----VSRLALYDIANT----P----GVAAD---VGHINTRSEVAGYMGN   87 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~----g~-----~~ev~l~D~~~~----~----~~~~d---l~~~~~~~~v~~~~~~   87 (209)
                      ..||++.|| |..|..++..|.+.    |+     -++++++|++-+    .    .....   +.+..     .   ..
T Consensus        25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~-----~---~~   95 (254)
T cd00762          25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPE-----R---ES   95 (254)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcc-----c---cc
Confidence            359999999 99999999877654    33     138999999631    0    00111   11110     0   12


Q ss_pred             CchhhhcC--CCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437           88 DQLGQALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus        88 ~d~~~a~~--~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      .++.++++  +.|++|=+.+.+   |           -+++++++.|.++++..+|.-.|||..
T Consensus        96 ~~L~eav~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~  145 (254)
T cd00762          96 GDLEDAVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTS  145 (254)
T ss_pred             CCHHHHHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCC
Confidence            47899999  999998876644   2           244788899999998888888899976

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.02  E-value=0.0043  Score=54.29  Aligned_cols=74  Identities=19%  Similarity=0.331  Sum_probs=49.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-----hh--------------H----HHhhcCCCCCcceeEee
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-----PG--------------V----AADVGHINTRSEVAGYM   85 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-----~~--------------~----~~dl~~~~~~~~v~~~~   85 (209)
                      .||+|+|+ |.+|+.++..|+..|+ +++.++|.|..     ..              +    ...+........+..+.
T Consensus        25 ~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~  102 (338)
T PRK12475         25 KHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV  102 (338)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence            38999999 9999999999999996 69999999731     00              0    11222222222333332


Q ss_pred             c---CCchhhhcCCCCEEEEcC
Q 028437           86 G---NDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        86 ~---~~d~~~a~~~aD~Vi~~a  104 (209)
                      .   .+++++.++++|+||.+.
T Consensus       103 ~~~~~~~~~~~~~~~DlVid~~  124 (338)
T PRK12475        103 TDVTVEELEELVKEVDLIIDAT  124 (338)
T ss_pred             ccCCHHHHHHHhcCCCEEEEcC
Confidence            1   134567789999999984

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.01  E-value=0.0053  Score=55.28  Aligned_cols=124  Identities=23%  Similarity=0.322  Sum_probs=70.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh---HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~---~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .++|+|+|+ |.+|..++..|+..|+  +|+++|++....   ...++....    +..+.. ....+...++|+||.++
T Consensus         5 ~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~~----~~~~~~-~~~~~~~~~~d~vv~~~   76 (450)
T PRK14106          5 GKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGELG----IELVLG-EYPEEFLEGVDLVVVSP   76 (450)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC----CEEEeC-CcchhHhhcCCEEEECC
Confidence            358999999 8899999999999999  999999964211   122332211    111111 11124457899999998


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCC--cHHHHHHHHHHh
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS--TVPIAAEVFKKA  162 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~--~~~i~~~~~~~~  162 (209)
                      |.+.... .....-+.++++...+....+. .+ .++|-+|...+=  ++.+++.++...
T Consensus        77 g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~-~~-~~vI~ITGS~GKTTt~~~l~~iL~~~  133 (450)
T PRK14106         77 GVPLDSP-PVVQAHKKGIEVIGEVELAYRF-SK-APIVAITGTNGKTTTTTLLGEIFKNA  133 (450)
T ss_pred             CCCCCCH-HHHHHHHCCCcEEeHHHHHHhh-cC-CCEEEEeCCCchHHHHHHHHHHHHHc
Confidence            8643111 1111122344444444333322 22 456667666443  335666676553

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=97.00  E-value=0.0028  Score=50.48  Aligned_cols=112  Identities=21%  Similarity=0.234  Sum_probs=68.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHh-hcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAAD-VGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~d-l~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .+|...|.||+|-.|+.+...+.+.+.++.|+++-|.+.. +...+ +.+     ...++.--+++.++.++.|+.+.+-
T Consensus        17 q~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at~k~v~q-----~~vDf~Kl~~~a~~~qg~dV~FcaL   91 (238)
T KOG4039|consen   17 QNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPATDKVVAQ-----VEVDFSKLSQLATNEQGPDVLFCAL   91 (238)
T ss_pred             hccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccccceeee-----EEechHHHHHHHhhhcCCceEEEee
Confidence            3468999999999999999999999999999999886321 00000 001     0011110124567788999999997


Q ss_pred             CCCC-CCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          105 GVPR-KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       105 g~~~-~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      |..+ +.|-+  .++...-+++...++..++.+-...+++.|
T Consensus        92 gTTRgkaGad--gfykvDhDyvl~~A~~AKe~Gck~fvLvSS  131 (238)
T KOG4039|consen   92 GTTRGKAGAD--GFYKVDHDYVLQLAQAAKEKGCKTFVLVSS  131 (238)
T ss_pred             cccccccccC--ceEeechHHHHHHHHHHHhCCCeEEEEEec
Confidence            7655 22211  123333355566666666554344444444

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=97.00  E-value=0.031  Score=46.16  Aligned_cols=67  Identities=18%  Similarity=0.205  Sum_probs=41.7

Q ss_pred             cCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecC----CchhhhcCCCCEEEEcCCCCC
Q 028437           35 GAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        35 GasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~----~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      .+||++|.+++..|+.+|+  +|++++++..   ........  ..+......    ..+.+.++++|+||++||+..
T Consensus        23 ~SSG~iG~aLA~~L~~~G~--~V~li~r~~~---~~~~~~~~--v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAvsd   93 (229)
T PRK06732         23 HSTGQLGKIIAETFLAAGH--EVTLVTTKTA---VKPEPHPN--LSIIEIENVDDLLETLEPLVKDHDVLIHSMAVSD   93 (229)
T ss_pred             ccchHHHHHHHHHHHhCCC--EEEEEECccc---ccCCCCCC--eEEEEEecHHHHHHHHHHHhcCCCEEEeCCccCC
Confidence            4579999999999999999  9999987421   00000001  111111111    123355678999999999863

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.00  E-value=0.012  Score=50.65  Aligned_cols=131  Identities=18%  Similarity=0.280  Sum_probs=78.0

Q ss_pred             ccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCC-------CcceeEeecC
Q 028437           17 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT-------RSEVAGYMGN   87 (209)
Q Consensus        17 ~~~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~-------~~~v~~~~~~   87 (209)
                      ..|+|+.+.++..+|+|+|++-.+|..++.++..+|.  .|.+.-++..  .....+++....       ..++..+...
T Consensus        22 ~~~~~~~~~k~~~hi~itggS~glgl~la~e~~~~ga--~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v   99 (331)
T KOG1210|consen   22 DHRSFIVKPKPRRHILITGGSSGLGLALALECKREGA--DVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSV   99 (331)
T ss_pred             HHHhhhcccCccceEEEecCcchhhHHHHHHHHHccC--ceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHH
Confidence            3577888888778999999999999999999999999  8888888631  111112221110       1122211100


Q ss_pred             Cchhhhc----CCCCEEEEcCCCCC---CCCCChh---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437           88 DQLGQAL----EDSDVVIIPAGVPR---KPGMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus        88 ~d~~~a~----~~aD~Vi~~ag~~~---~~g~~r~---~~~~~N----~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      ++.-+.+    ---|.+|++||..-   ..+.+..   ..+..|    +-..++.+..+++.++.+++++++.-.+
T Consensus       100 ~~~~~~l~~~~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a  175 (331)
T KOG1210|consen  100 SKVIEELRDLEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLA  175 (331)
T ss_pred             HHHHhhhhhccCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhh
Confidence            1111222    24599999999752   1112222   223344    4455666777777677778887775443

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.97  E-value=0.0049  Score=53.91  Aligned_cols=34  Identities=21%  Similarity=0.425  Sum_probs=31.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .||+|+|+ |.+|+.++..|+..|. ++|.++|.+.
T Consensus        25 ~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (339)
T PRK07688         25 KHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY   58 (339)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence            48999999 9999999999999997 6999999973

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.97  E-value=0.011  Score=48.75  Aligned_cols=97  Identities=23%  Similarity=0.355  Sum_probs=61.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCcc--EEEEEecCC----chh-----HHHhhcCCCCCcceeEeecCCchhhhcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVS--RLALYDIAN----TPG-----VAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~--ev~l~D~~~----~~~-----~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   97 (209)
                      +||+|+|| |.+|..++..|...|. +  +|+++|++.    ...     ...++.+......   .  ..+++++++++
T Consensus        26 ~rvlvlGA-GgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~--~~~l~~~l~~~   98 (226)
T cd05311          26 VKIVINGA-GAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---T--GGTLKEALKGA   98 (226)
T ss_pred             CEEEEECc-hHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---c--cCCHHHHHhcC
Confidence            59999999 9999999999998886 4  799999973    111     1111211110000   1  12566888999


Q ss_pred             CEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 028437           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (209)
Q Consensus        98 D~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~  150 (209)
                      |++|.+.+    +|+-       +    .+.++.|   ++..+++..+||...
T Consensus        99 dvlIgaT~----~G~~-------~----~~~l~~m---~~~~ivf~lsnP~~e  133 (226)
T cd05311          99 DVFIGVSR----PGVV-------K----KEMIKKM---AKDPIVFALANPVPE  133 (226)
T ss_pred             CEEEeCCC----CCCC-------C----HHHHHhh---CCCCEEEEeCCCCCc
Confidence            99999865    2320       1    2333444   355566677899753

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.96  E-value=0.013  Score=52.67  Aligned_cols=36  Identities=28%  Similarity=0.455  Sum_probs=32.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ..+++|.|+|+ |.+|..++..|...|+  +++++|.++
T Consensus       229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~--~v~vid~~~  264 (453)
T PRK09496        229 KPVKRVMIVGG-GNIGYYLAKLLEKEGY--SVKLIERDP  264 (453)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCH
Confidence            34579999999 9999999999999999  999999975

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.94  E-value=0.0067  Score=54.30  Aligned_cols=67  Identities=18%  Similarity=0.202  Sum_probs=48.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ...+|+|+|. |.+|..++..+...|.  +|+++|+++....... .+ .+    ..    .+++++++++|+||.+.|.
T Consensus       194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A~-~~-G~----~v----~~leeal~~aDVVItaTG~  260 (406)
T TIGR00936       194 AGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEAA-MD-GF----RV----MTMEEAAKIGDIFITATGN  260 (406)
T ss_pred             CcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHHH-hc-CC----Ee----CCHHHHHhcCCEEEECCCC
Confidence            4469999999 9999999999998888  9999998863221111 11 11    11    1346788999999988664

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02928 oxidoreductase family protein

Probab=96.94  E-value=0.005  Score=54.03  Aligned_cols=77  Identities=18%  Similarity=0.203  Sum_probs=49.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhh--cCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV--GHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl--~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      -..++|+|+|. |.||+.++..|..-|.  +|..+|+.........+  ................++++.+++||+|+.+
T Consensus       157 l~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~  233 (347)
T PLN02928        157 LFGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC  233 (347)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence            34469999999 9999999999998898  99999985321111111  0000000000000123688999999999998


Q ss_pred             CC
Q 028437          104 AG  105 (209)
Q Consensus       104 ag  105 (209)
                      ..
T Consensus       234 lP  235 (347)
T PLN02928        234 CT  235 (347)
T ss_pred             CC
Confidence            64

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=96.94  E-value=0.0032  Score=55.12  Aligned_cols=33  Identities=30%  Similarity=0.367  Sum_probs=26.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEE-Ee
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLAL-YD   61 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l-~D   61 (209)
                      |+||+|+||+|++|..++..|...... +++. .+
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~-elv~v~~   35 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEV-EIVAVTS   35 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEC
Confidence            479999999999999999988876433 6544 54

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.93  E-value=0.069  Score=45.25  Aligned_cols=33  Identities=24%  Similarity=0.458  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      .+|+|+|+ |.+|+.++..|++.|. ++++++|.|
T Consensus        31 s~VlVvG~-GGVGs~vae~Lar~GV-g~itLiD~D   63 (268)
T PRK15116         31 AHICVVGI-GGVGSWAAEALARTGI-GAITLIDMD   63 (268)
T ss_pred             CCEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence            48999999 9999999999999996 599999987

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.92  E-value=0.0045  Score=48.47  Aligned_cols=56  Identities=25%  Similarity=0.468  Sum_probs=41.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      +.++|+|+|.++.+|..++..|..++-  .|.+.+.+                       +.++++.+++||+||.++|.
T Consensus        35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G~   89 (160)
T PF02882_consen   35 EGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVGK   89 (160)
T ss_dssp             TT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SSS
T ss_pred             CCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeecc
Confidence            446999999989999999999999987  77776542                       12466778889999999887


Q ss_pred             C
Q 028437          107 P  107 (209)
Q Consensus       107 ~  107 (209)
                      +
T Consensus        90 ~   90 (160)
T PF02882_consen   90 P   90 (160)
T ss_dssp             T
T ss_pred             c
Confidence            6

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=96.92  E-value=0.0016  Score=56.98  Aligned_cols=70  Identities=21%  Similarity=0.390  Sum_probs=44.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ||+|+||+|++|..++..|.++++ ..++.++.+....+....+...    .+...  ..+ .++++++|+||+++|.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~----~~~~~--~~~-~~~~~~~D~v~~a~g~   71 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGK----ELEVN--EAK-IESFEGIDIALFSAGG   71 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCe----eEEEE--eCC-hHHhcCCCEEEECCCH
Confidence            689999999999999999988766 2366666554322222222211    11111  112 2456899999999764

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.91  E-value=0.011  Score=44.93  Aligned_cols=32  Identities=28%  Similarity=0.614  Sum_probs=29.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ||+|+|+ |.+|+.++..|+..|. +++.++|.+
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFD   32 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCC
Confidence            6899999 9999999999999997 689999987

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PLN00015 protochlorophyllide reductase

Probab=96.91  E-value=0.009  Score=51.09  Aligned_cols=112  Identities=16%  Similarity=0.075  Sum_probs=64.1

Q ss_pred             EEEcCCCchHHHHHHHHHhCC-CccEEEEEecCCchh--HHHhhcCCCCCcceeE----eecCCchhhh-------cCCC
Q 028437           32 AVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPG--VAADVGHINTRSEVAG----YMGNDQLGQA-------LEDS   97 (209)
Q Consensus        32 ~IiGasG~vG~~la~~L~~~g-~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~----~~~~~d~~~a-------~~~a   97 (209)
                      +|+||++.+|..++..|++.| .  .|++.+++....  ...++.....  .+..    +...++.+++       ....
T Consensus         1 lITGas~GIG~aia~~l~~~G~~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~d~~~v~~~~~~~~~~~~~i   76 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKW--HVVMACRDFLKAERAAKSAGMPKD--SYTVMHLDLASLDSVRQFVDNFRRSGRPL   76 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHhcCCCC--eEEEEEecCCCHHHHHHHHHHHHhcCCCC
Confidence            489999999999999999999 7  899998864211  2223322111  1111    1111112222       2457


Q ss_pred             CEEEEcCCCCCC----CCCCh---hHHHHHHHHH----HHHHHHHHHhhCC-CeEEEEecCC
Q 028437           98 DVVIIPAGVPRK----PGMTR---DDLFNINAGI----VKDLCSAIAKYCP-NAIVNMISNP  147 (209)
Q Consensus        98 D~Vi~~ag~~~~----~g~~r---~~~~~~N~~~----~~~i~~~i~~~~p-~~~viv~snP  147 (209)
                      |++|+.||....    ...+.   ...+..|+..    ++.+++.+.+... .++||++|.-
T Consensus        77 D~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~  138 (308)
T PLN00015         77 DVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSI  138 (308)
T ss_pred             CEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEecc
Confidence            999999987421    11222   2345666654    5555666654321 4677777643

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.90  E-value=0.0029  Score=54.38  Aligned_cols=55  Identities=18%  Similarity=0.376  Sum_probs=45.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      .++|+|+|.+|.+|..++..|++.|.  +|+++++..                       .++++..++||+||.+.|.+
T Consensus       159 Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg~~  213 (301)
T PRK14194        159 GKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVGRP  213 (301)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecCCh
Confidence            36999999977999999999999998  999997631                       13567788899999998765

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.90  E-value=0.0038  Score=52.41  Aligned_cols=66  Identities=36%  Similarity=0.419  Sum_probs=43.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCccEEE-EEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~-g~~~ev~-l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +|||+|+|++|.+|+.++..+.+. ++  +++ ++|+++.....  ....    .+..   .+|+++.++++|+||.+.
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~--elvav~d~~~~~~~~--~~~~----~i~~---~~dl~~ll~~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDL--ELVAAVDRPGSPLVG--QGAL----GVAI---TDDLEAVLADADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCC--EEEEEEecCCccccc--cCCC----Cccc---cCCHHHhccCCCEEEECC
Confidence            479999999999999999887764 44  555 47765421111  1111    1111   346777788899999765

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.88  E-value=0.0092  Score=51.69  Aligned_cols=64  Identities=16%  Similarity=0.187  Sum_probs=44.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +||+|+|+ |.+|.+++..|...|+  ++++.++..... ...+....    +..   . +..+++++||+|+++.
T Consensus         4 kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~-~~~a~~~G----v~~---~-s~~ea~~~ADiVvLaV   67 (314)
T TIGR00465         4 KTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGAS-WKKATEDG----FKV---G-TVEEAIPQADLIMNLL   67 (314)
T ss_pred             CEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhh-HHHHHHCC----CEE---C-CHHHHHhcCCEEEEeC
Confidence            58999999 9999999999999998  777665532111 11122211    111   1 3567889999999996

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.87  E-value=0.0031  Score=54.24  Aligned_cols=95  Identities=17%  Similarity=0.099  Sum_probs=63.3

Q ss_pred             hhhhhhhccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcce
Q 028437            4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEV   81 (209)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v   81 (209)
                      +.+-.++|-|-.+-+-+++.  +...+++|+|+ |..+...+..+..--.+.+|.++++++.+  ....++.+. ....+
T Consensus        95 ~~lT~~RTaA~salaa~~l~--~da~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~-~~~~v  170 (301)
T PRK06407         95 NRLGQIRTGAVTAYATSILH--KNVENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKE-FGVDI  170 (301)
T ss_pred             chHHHHHHHHHHHHHHHHhh--cCCcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHh-cCCcE
Confidence            44555666555555555664  35679999999 99999877766664446899999998532  233444432 12233


Q ss_pred             eEeecCCchhhhcCCCCEEEEcCC
Q 028437           82 AGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        82 ~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ...   ++.++++++||+|+.+..
T Consensus       171 ~~~---~~~~eav~~aDIV~taT~  191 (301)
T PRK06407        171 RPV---DNAEAALRDADTITSITN  191 (301)
T ss_pred             EEe---CCHHHHHhcCCEEEEecC
Confidence            332   467899999999998744

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=96.84  E-value=0.0051  Score=54.56  Aligned_cols=62  Identities=19%  Similarity=0.354  Sum_probs=46.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ..++|+|+|. |.||+.++..|..-|.  +|..+|+....  .   ...     ..    ..++++.+++||+|++...
T Consensus       115 ~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~--~---~~~-----~~----~~~L~ell~~sDiI~lh~P  176 (378)
T PRK15438        115 HDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRAD--R---GDE-----GD----FRSLDELVQEADILTFHTP  176 (378)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcccc--c---ccc-----cc----cCCHHHHHhhCCEEEEeCC
Confidence            4469999999 9999999999999998  99999863210  0   000     00    1357888999999998754

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=96.81  E-value=0.0099  Score=53.09  Aligned_cols=39  Identities=18%  Similarity=0.265  Sum_probs=34.6

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        24 ~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .+.++++|+|+||+|.+|+-++..|+++|+  .+...-++.
T Consensus        75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf--~vra~VRd~  113 (411)
T KOG1203|consen   75 NSKKPTTVLVVGATGKVGRRIVKILLKRGF--SVRALVRDE  113 (411)
T ss_pred             CCCCCCeEEEecCCCchhHHHHHHHHHCCC--eeeeeccCh
Confidence            366778999999999999999999999998  888887864

>PRK09620 hypothetical protein; Provisional

Probab=96.81  E-value=0.0038  Score=51.64  Aligned_cols=74  Identities=20%  Similarity=0.271  Sum_probs=45.8

Q ss_pred             CCeEEEEcCC----------------CchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecC----
Q 028437           28 DRKVAVLGAA----------------GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----   87 (209)
Q Consensus        28 ~~kI~IiGas----------------G~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~----   87 (209)
                      .+||+||+|.                |++|++++..|+.+|+  +|++++.... .....+..   ...+..+...    
T Consensus         3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga--~V~li~g~~~-~~~~~~~~---~~~~~~V~s~~d~~   76 (229)
T PRK09620          3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGA--HVIYLHGYFA-EKPNDINN---QLELHPFEGIIDLQ   76 (229)
T ss_pred             CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCC--eEEEEeCCCc-CCCcccCC---ceeEEEEecHHHHH
Confidence            3589999775                9999999999999999  9999987321 00000000   0011111111    


Q ss_pred             Cchhhhc--CCCCEEEEcCCCC
Q 028437           88 DQLGQAL--EDSDVVIIPAGVP  107 (209)
Q Consensus        88 ~d~~~a~--~~aD~Vi~~ag~~  107 (209)
                      +.+.+.+  .++|+|||+|++.
T Consensus        77 ~~l~~~~~~~~~D~VIH~AAvs   98 (229)
T PRK09620         77 DKMKSIITHEKVDAVIMAAAGS   98 (229)
T ss_pred             HHHHHHhcccCCCEEEECcccc
Confidence            1234445  3689999999875

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.80  E-value=0.0086  Score=49.87  Aligned_cols=34  Identities=24%  Similarity=0.492  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .||+|+|+ |.+|+.++..|+..|. ++++++|.|.
T Consensus        25 ~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~   58 (240)
T TIGR02355        25 SRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT   58 (240)
T ss_pred             CcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence            49999999 9999999999999996 6999999973

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.79  E-value=0.0036  Score=53.91  Aligned_cols=92  Identities=13%  Similarity=0.108  Sum_probs=59.6

Q ss_pred             hhhhhhccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEecCCch--hHHHhhcCCCCCcce
Q 028437            5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANTP--GVAADVGHINTRSEV   81 (209)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~-~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v   81 (209)
                      .+-.++|-|-.+-+-.++.+. ...+++|+|+ |..|...+..+.. .+. .+|.++++++.+  ..+.++....  ..+
T Consensus       103 ~lT~~RTaA~sala~~~La~~-~~~~v~IiGa-G~qa~~~~~al~~~~~~-~~v~v~~r~~~~a~~~a~~~~~~~--~~~  177 (304)
T PRK07340        103 TVTGRRTAAVSLLAARTLAPA-PPGDLLLIGT-GVQARAHLEAFAAGLPV-RRVWVRGRTAASAAAFCAHARALG--PTA  177 (304)
T ss_pred             hHHHHHHHHHHHHHHHHhCCC-CCCEEEEECC-cHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcC--Cee
Confidence            344555555555555555442 4468999999 9999999888865 443 599999998532  2333343221  112


Q ss_pred             eEeecCCchhhhcCCCCEEEEcCC
Q 028437           82 AGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        82 ~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      .    ..+.+++++++|+|+.+..
T Consensus       178 ~----~~~~~~av~~aDiVitaT~  197 (304)
T PRK07340        178 E----PLDGEAIPEAVDLVVTATT  197 (304)
T ss_pred             E----ECCHHHHhhcCCEEEEccC
Confidence            2    1367889999999999854

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.78  E-value=0.015  Score=47.92  Aligned_cols=34  Identities=35%  Similarity=0.562  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .||+|+|+ |.+|+.++..|+..|. ++++++|.+.
T Consensus        22 ~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV   55 (228)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            49999999 9999999999999996 6999999873

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]

Probab=96.78  E-value=0.0035  Score=53.43  Aligned_cols=120  Identities=18%  Similarity=0.165  Sum_probs=75.3

Q ss_pred             cccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec-CCc----hhHHHhhcCCCCC-cceeEeecC
Q 028437           14 KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANT----PGVAADVGHINTR-SEVAGYMGN   87 (209)
Q Consensus        14 ~~~~~~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~-~~~----~~~~~dl~~~~~~-~~v~~~~~~   87 (209)
                      |-+|||+=.+-    .=.+|.|||||+|..++..|...|-  ++.+==+ ++.    .....||.+..+. -+++   +.
T Consensus        51 kGtGGRsS~sG----iVaTVFGAtGFlGryvvnklak~GS--QviiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~---De  121 (391)
T KOG2865|consen   51 KGTGGRSSVSG----IVATVFGATGFLGRYVVNKLAKMGS--QVIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLR---DE  121 (391)
T ss_pred             CCCCCcccccc----eEEEEecccccccHHHHHHHhhcCC--eEEEeccCCccchhheeecccccceeeeccCCC---CH
Confidence            44566653222    2457999999999999999999996  6655433 221    1112345544321 1222   23


Q ss_pred             CchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        88 ~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ++++++++.+++||+..|.-...+  ..++.+.|..+.+.++..+++.+-+ ++|.+|
T Consensus       122 dSIr~vvk~sNVVINLIGrd~eTk--nf~f~Dvn~~~aerlAricke~GVe-rfIhvS  176 (391)
T KOG2865|consen  122 DSIRAVVKHSNVVINLIGRDYETK--NFSFEDVNVHIAERLARICKEAGVE-RFIHVS  176 (391)
T ss_pred             HHHHHHHHhCcEEEEeeccccccC--CcccccccchHHHHHHHHHHhhChh-heeehh
Confidence            467889999999999987542111  2345677888888888888876544 344443

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=96.77  E-value=0.014  Score=50.73  Aligned_cols=67  Identities=21%  Similarity=0.291  Sum_probs=47.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ...-+++.|+|. |.||+.++..+..-|.  +|..+|+.+. .........      ..    .++++.++++|+|+..+
T Consensus       143 ~l~gktvGIiG~-GrIG~avA~r~~~Fgm--~v~y~~~~~~-~~~~~~~~~------~y----~~l~ell~~sDii~l~~  208 (324)
T COG1052         143 DLRGKTLGIIGL-GRIGQAVARRLKGFGM--KVLYYDRSPN-PEAEKELGA------RY----VDLDELLAESDIISLHC  208 (324)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCCC-hHHHhhcCc------ee----ccHHHHHHhCCEEEEeC
Confidence            344579999999 9999999999996666  9999999753 122111111      11    13688899999999886


Q ss_pred             C
Q 028437          105 G  105 (209)
Q Consensus       105 g  105 (209)
                      .
T Consensus       209 P  209 (324)
T COG1052         209 P  209 (324)
T ss_pred             C
Confidence            4

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.76  E-value=0.0069  Score=46.37  Aligned_cols=55  Identities=31%  Similarity=0.477  Sum_probs=45.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      .++|+|+|.+..+|..++..|.++|.  ++..++.+                       +.++++++++||+||.+.|.+
T Consensus        28 gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~-----------------------t~~l~~~v~~ADIVvsAtg~~   82 (140)
T cd05212          28 GKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWK-----------------------TIQLQSKVHDADVVVVGSPKP   82 (140)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCC-----------------------CcCHHHHHhhCCEEEEecCCC
Confidence            35999999999999999999999987  88888652                       124577889999999998876

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.75  E-value=0.0068  Score=52.23  Aligned_cols=62  Identities=24%  Similarity=0.333  Sum_probs=46.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ..++|+|+|- |.||+.++..|..-|.  +|..+|+....        ....   ..   ..++++.+++||+|+++..
T Consensus       121 ~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~--------~~~~---~~---~~~l~ell~~aDiv~~~lp  182 (303)
T PRK06436        121 YNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN--------DGIS---SI---YMEPEDIMKKSDFVLISLP  182 (303)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc--------cCcc---cc---cCCHHHHHhhCCEEEECCC
Confidence            4469999999 9999999998887788  99999985311        0000   00   1257888999999999864

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=96.75  E-value=0.0061  Score=51.65  Aligned_cols=69  Identities=25%  Similarity=0.231  Sum_probs=44.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC--CCccEEE-EEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLN--PLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~--g~~~ev~-l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ++||+|+|. |.+|+.++..|...  ++  ++. ++|+++...  .++.... . ....   .+++++.++++|+|++++
T Consensus         6 ~irIGIIG~-G~IG~~~a~~L~~~~~~~--el~aV~dr~~~~a--~~~a~~~-g-~~~~---~~~~eell~~~D~Vvi~t   75 (271)
T PRK13302          6 ELRVAIAGL-GAIGKAIAQALDRGLPGL--TLSAVAVRDPQRH--ADFIWGL-R-RPPP---VVPLDQLATHADIVVEAA   75 (271)
T ss_pred             eeEEEEECc-cHHHHHHHHHHHhcCCCe--EEEEEECCCHHHH--HHHHHhc-C-CCcc---cCCHHHHhcCCCEEEECC
Confidence            479999999 99999999888763  55  665 677764322  2221110 0 0001   135667788999999997


Q ss_pred             CC
Q 028437          105 GV  106 (209)
Q Consensus       105 g~  106 (209)
                      ..
T Consensus        76 p~   77 (271)
T PRK13302         76 PA   77 (271)
T ss_pred             Cc
Confidence            53

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=96.75  E-value=0.022  Score=48.91  Aligned_cols=118  Identities=16%  Similarity=0.217  Sum_probs=72.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCC-CcceeEeec-CCc-----hhhhcCCCC--
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMG-NDQ-----LGQALEDSD--   98 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~-~~~v~~~~~-~~d-----~~~a~~~aD--   98 (209)
                      =-+|+||+..||...+.+|+++|+  .|+|+.|++  +.....|+.+... ..+...++. ..+     +++.+.+-|  
T Consensus        51 WAVVTGaTDGIGKayA~eLAkrG~--nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~Vg  128 (312)
T KOG1014|consen   51 WAVVTGATDGIGKAYARELAKRGF--NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVG  128 (312)
T ss_pred             EEEEECCCCcchHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceE
Confidence            356999999999999999999999  999999985  3344445554431 112111111 122     455566655  


Q ss_pred             EEEEcCCCCC-CCCC----Ch---hHHHHHH----HHHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 028437           99 VVIIPAGVPR-KPGM----TR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (209)
Q Consensus        99 ~Vi~~ag~~~-~~g~----~r---~~~~~~N----~~~~~~i~~~i~~~~p~~~viv~snP~~~  150 (209)
                      +.|+.+|... .|..    +.   .+.+..|    ...++-+...|.+ .+.+.+++++.-.+.
T Consensus       129 ILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~-r~~G~IvnigS~ag~  191 (312)
T KOG1014|consen  129 ILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVE-RKKGIIVNIGSFAGL  191 (312)
T ss_pred             EEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhc-CCCceEEEecccccc
Confidence            4777888754 2220    11   1222233    2456667777775 567788888766554

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.75  E-value=0.027  Score=51.26  Aligned_cols=138  Identities=18%  Similarity=0.180  Sum_probs=74.3

Q ss_pred             cccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEeecCCch
Q 028437           14 KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGNDQL   90 (209)
Q Consensus        14 ~~~~~~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~~~~d~   90 (209)
                      .|.+--+|.... ...+|+|+|+ |.+|..++..|.+.|+  +|+++|..+.   ......+....    +....+. +.
T Consensus         3 ~~~~~~~~~~~~-~~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~g----v~~~~~~-~~   73 (480)
T PRK01438          3 RPPGLTSWHSDW-QGLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEALG----ATVRLGP-GP   73 (480)
T ss_pred             cccchhhcccCc-CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHcC----CEEEECC-Cc
Confidence            455555555544 3458999999 9999999999999998  9999997531   11112233322    1222111 11


Q ss_pred             hhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHH--HHHHHHhhCCCeEEEEecCCCCC--cHHHHHHHHHHh
Q 028437           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKD--LCSAIAKYCPNAIVNMISNPVNS--TVPIAAEVFKKA  162 (209)
Q Consensus        91 ~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~--i~~~i~~~~p~~~viv~snP~~~--~~~i~~~~~~~~  162 (209)
                       +...++|+||.+.|.+..... .......+++++.+  ++-.+.+...+.++|-+|...+=  ++.+++.+++..
T Consensus        74 -~~~~~~D~Vv~s~Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~  147 (480)
T PRK01438         74 -TLPEDTDLVVTSPGWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA  147 (480)
T ss_pred             -cccCCCCEEEECCCcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence             134579999999888642210 00111223333222  22122111123446667666543  336667776553

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.72  E-value=0.0057  Score=48.23  Aligned_cols=55  Identities=27%  Similarity=0.522  Sum_probs=43.6

Q ss_pred             CCCeEEEEcCCCc-hHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGG-IGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~-vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ...||+|+|+ |. +|..++..|...|.  +|++++++.                       +++.+.+++||+||.+.+
T Consensus        43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat~   96 (168)
T cd01080          43 AGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAVG   96 (168)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcCC
Confidence            3359999999 76 58889999999887  888887731                       145677889999999977


Q ss_pred             CC
Q 028437          106 VP  107 (209)
Q Consensus       106 ~~  107 (209)
                      .+
T Consensus        97 ~~   98 (168)
T cd01080          97 KP   98 (168)
T ss_pred             CC
Confidence            65

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=96.72  E-value=0.0078  Score=53.49  Aligned_cols=62  Identities=23%  Similarity=0.314  Sum_probs=46.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ..++|+|+|. |.||+.++..|...|.  +|..+|+....  .   .. .    ..    ..++++.+++||+|++...
T Consensus       115 ~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~--~---~~-~----~~----~~~l~ell~~aDiV~lh~P  176 (381)
T PRK00257        115 AERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQE--A---EG-D----GD----FVSLERILEECDVISLHTP  176 (381)
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCcccc--c---cc-C----cc----ccCHHHHHhhCCEEEEeCc
Confidence            3468999999 9999999999999999  99999874211  0   00 0    01    1257888999999999854

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=96.72  E-value=0.023  Score=44.55  Aligned_cols=65  Identities=17%  Similarity=0.210  Sum_probs=42.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .++|+|+|. |..|...+..|...|+  +|.+-.+........ -....+    +    ..+.+|+.+.+|+|+++.
T Consensus         4 ~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~-A~~~Gf----~----v~~~~eAv~~aDvV~~L~   68 (165)
T PF07991_consen    4 GKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEK-AKADGF----E----VMSVAEAVKKADVVMLLL   68 (165)
T ss_dssp             TSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHH-HHHTT-----E----CCEHHHHHHC-SEEEE-S
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHH-HHHCCC----e----eccHHHHHhhCCEEEEeC
Confidence            358999999 9999999999999999  988888764322211 111111    1    135689999999999984

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.69  E-value=0.0058  Score=52.17  Aligned_cols=56  Identities=16%  Similarity=0.428  Sum_probs=44.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ...+|+|+|++|.+|..++..|+..|.  +|++++++                       +.++.+.++++|+||.+.|.
T Consensus       158 ~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~-----------------------t~~L~~~~~~aDIvI~AtG~  212 (283)
T PRK14192        158 AGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSR-----------------------TQNLPELVKQADIIVGAVGK  212 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCC-----------------------chhHHHHhccCCEEEEccCC
Confidence            346999999966699999999999987  88888651                       12456667899999999874


Q ss_pred             C
Q 028437          107 P  107 (209)
Q Consensus       107 ~  107 (209)
                      +
T Consensus       213 ~  213 (283)
T PRK14192        213 P  213 (283)
T ss_pred             C
Confidence            4

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.68  E-value=0.011  Score=49.28  Aligned_cols=33  Identities=27%  Similarity=0.485  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      .||+|+|+ |.+|+.++..|+..|. ++++++|.|
T Consensus        33 ~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D   65 (245)
T PRK05690         33 ARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFD   65 (245)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCC
Confidence            49999999 9999999999999996 699999987

>PLN02494 adenosylhomocysteinase

Probab=96.68  E-value=0.02  Score=52.07  Aligned_cols=90  Identities=21%  Similarity=0.235  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ...+|+|+|. |.+|+.++..+...|.  +|+++|+++... .+..  + .+.    .    .+++++++++|+||.+.|
T Consensus       253 aGKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~--~-G~~----v----v~leEal~~ADVVI~tTG  318 (477)
T PLN02494        253 AGKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQALM--E-GYQ----V----LTLEDVVSEADIFVTTTG  318 (477)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHh--c-CCe----e----ccHHHHHhhCCEEEECCC
Confidence            3469999999 9999999999998888  899999876321 2111  1 111    1    135678899999998755


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ...        .  .|    .   +.+....+.+++++++-+
T Consensus       319 t~~--------v--I~----~---e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        319 NKD--------I--IM----V---DHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             Ccc--------c--hH----H---HHHhcCCCCCEEEEcCCC
Confidence            321        0  01    1   233333467888888874

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.67  E-value=0.005  Score=52.50  Aligned_cols=57  Identities=18%  Similarity=0.371  Sum_probs=46.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ...+|+|+|.||.+|..++..|++.|.  +|+++...                       +.++++.+++||+||.++|.
T Consensus       157 ~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVI~avg~  211 (284)
T PRK14179        157 EGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHSR-----------------------TRNLAEVARKADILVVAIGR  211 (284)
T ss_pred             CCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECCC-----------------------CCCHHHHHhhCCEEEEecCc
Confidence            336999999999999999999999998  88877221                       12456788999999999887


Q ss_pred             CC
Q 028437          107 PR  108 (209)
Q Consensus       107 ~~  108 (209)
                      +.
T Consensus       212 ~~  213 (284)
T PRK14179        212 GH  213 (284)
T ss_pred             cc
Confidence            63

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=96.67  E-value=0.0065  Score=48.98  Aligned_cols=75  Identities=23%  Similarity=0.313  Sum_probs=50.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      .++|+|+|-|.-||..++..|++++-  .|+++|++...-  ....+.|...+  ....  +.++.+.+++||+||.++|
T Consensus        62 GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t~--~~~~--~~~l~~~~~~ADIVIsAvG  135 (197)
T cd01079          62 GKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKHH--VTDE--EAMTLDCLSQSDVVITGVP  135 (197)
T ss_pred             CCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCccccccccccccccccc--ccch--hhHHHHHhhhCCEEEEccC
Confidence            35999999999999999999999997  999998753110  01111222100  0000  1126688999999999998


Q ss_pred             CCC
Q 028437          106 VPR  108 (209)
Q Consensus       106 ~~~  108 (209)
                      .+.
T Consensus       136 ~~~  138 (197)
T cd01079         136 SPN  138 (197)
T ss_pred             CCC
Confidence            774

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.67  E-value=0.022  Score=51.99  Aligned_cols=134  Identities=16%  Similarity=0.143  Sum_probs=76.2

Q ss_pred             cccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhh-cCCCCCcceeEeecCCchhh
Q 028437           14 KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV-GHINTRSEVAGYMGNDQLGQ   92 (209)
Q Consensus        14 ~~~~~~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl-~~~~~~~~v~~~~~~~d~~~   92 (209)
                      .|--+|.+++..    ||+|+|+ |..|.+++..|...|.  +|.+.|++....  .++ ....    +..+....+ .+
T Consensus         5 ~~~~~~~~~~~~----~v~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~--~~~l~~~g----i~~~~~~~~-~~   70 (473)
T PRK00141          5 VPLSALPQELSG----RVLVAGA-GVSGRGIAAMLSELGC--DVVVADDNETAR--HKLIEVTG----VADISTAEA-SD   70 (473)
T ss_pred             ChhhhcccccCC----eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCChHHH--HHHHHhcC----cEEEeCCCc-hh
Confidence            455666676663    7999999 9999999999999998  999999854211  121 2211    112211112 34


Q ss_pred             hcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHH-----hhCCCeEEEEecCCCCC--cHHHHHHHHHHh
Q 028437           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA-----KYCPNAIVNMISNPVNS--TVPIAAEVFKKA  162 (209)
Q Consensus        93 a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~-----~~~p~~~viv~snP~~~--~~~i~~~~~~~~  162 (209)
                      .+.++|+||.+.|++...- ........+++++.++.-...     .+....++|-+|...+=  ++.+++.+++..
T Consensus        71 ~~~~~d~vV~Spgi~~~~p-~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~  146 (473)
T PRK00141         71 QLDSFSLVVTSPGWRPDSP-LLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG  146 (473)
T ss_pred             HhcCCCEEEeCCCCCCCCH-HHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            4678999999988874221 111112333444433332211     12212246667666543  336667776654

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.67  E-value=0.0063  Score=54.79  Aligned_cols=67  Identities=19%  Similarity=0.263  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ...+|+|+|+ |.+|..++..|...|.  +|+++|+++.+...... . .+  .+      .+++++++++|+||.+.|.
T Consensus       211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~~-~-G~--~v------~~l~eal~~aDVVI~aTG~  277 (425)
T PRK05476        211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQAAM-D-GF--RV------MTMEEAAELGDIFVTATGN  277 (425)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHHh-c-CC--Ee------cCHHHHHhCCCEEEECCCC
Confidence            3458999999 9999999999999998  99999997632211111 1 11  11      1356788899999998764

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.66  E-value=0.0059  Score=52.41  Aligned_cols=68  Identities=18%  Similarity=0.183  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ...|++|+|+ |.+|..++..|...|.  +|.++|+++..  .........  ....   ..++.+.++++|+||.++
T Consensus       151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~--~~~~~~~G~--~~~~---~~~l~~~l~~aDiVI~t~  218 (296)
T PRK08306        151 HGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAH--LARITEMGL--SPFH---LSELAEEVGKIDIIFNTI  218 (296)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcCC--eeec---HHHHHHHhCCCCEEEECC
Confidence            3469999999 9999999999999997  99999997421  111111111  1111   135677889999999985

>PRK06141 ornithine cyclodeaminase; Validated

Probab=96.65  E-value=0.0053  Score=53.06  Aligned_cols=92  Identities=20%  Similarity=0.276  Sum_probs=55.8

Q ss_pred             hhhhhccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEecCCch--hHHHhhcCCCCCccee
Q 028437            6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANTP--GVAADVGHINTRSEVA   82 (209)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~-~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~   82 (209)
                      +-.++|-|-.+-+=+++.+ ....+|+|+|+ |.+|...+..+.. .+ +.+|+++++++.+  ....++.+..  ..+.
T Consensus       104 lT~~RTaa~sala~~~La~-~~~~~v~iiG~-G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~~g--~~~~  178 (314)
T PRK06141        104 LTARRTAAASALAASYLAR-KDASRLLVVGT-GRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRAQG--FDAE  178 (314)
T ss_pred             hhcchhHHHHHHHHHHhCC-CCCceEEEECC-cHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHhcC--CceE
Confidence            3344444444444334433 24468999998 9999999876554 44 3599999997532  2233333221  1222


Q ss_pred             EeecCCchhhhcCCCCEEEEcCC
Q 028437           83 GYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        83 ~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      .   ..+.++++++||+|+.+..
T Consensus       179 ~---~~~~~~av~~aDIVi~aT~  198 (314)
T PRK06141        179 V---VTDLEAAVRQADIISCATL  198 (314)
T ss_pred             E---eCCHHHHHhcCCEEEEeeC
Confidence            2   2467789999999977644

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.63  E-value=0.0049  Score=52.68  Aligned_cols=67  Identities=19%  Similarity=0.226  Sum_probs=47.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ..+|+|+|+ |.+|..++..|...|.  +|+++++++...  ........    ..+. ..++++.++++|+||++.
T Consensus       151 gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~--~~~~~~g~----~~~~-~~~l~~~l~~aDiVint~  217 (287)
T TIGR02853       151 GSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADL--ARITEMGL----IPFP-LNKLEEKVAEIDIVINTI  217 (287)
T ss_pred             CCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHCCC----eeec-HHHHHHHhccCCEEEECC
Confidence            459999999 9999999999999997  999999975211  11111111    1110 135677889999999985

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK06932 glycerate dehydrogenase; Provisional

Probab=96.63  E-value=0.016  Score=50.23  Aligned_cols=62  Identities=15%  Similarity=0.281  Sum_probs=46.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ...++|+|+|. |.||+.++..+..-|.  +|..+|+...    .+...       .    ..++++.+++||+|++...
T Consensus       145 l~gktvgIiG~-G~IG~~va~~l~~fg~--~V~~~~~~~~----~~~~~-------~----~~~l~ell~~sDiv~l~~P  206 (314)
T PRK06932        145 VRGSTLGVFGK-GCLGTEVGRLAQALGM--KVLYAEHKGA----SVCRE-------G----YTPFEEVLKQADIVTLHCP  206 (314)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCcc----ccccc-------c----cCCHHHHHHhCCEEEEcCC
Confidence            34469999999 9999999999988888  9999886321    01100       0    1257899999999999864

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=96.62  E-value=0.017  Score=52.13  Aligned_cols=69  Identities=26%  Similarity=0.514  Sum_probs=47.9

Q ss_pred             eEEEEcCCCchHHH-HHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           30 KVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        30 kI~IiGasG~vG~~-la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      +|.++|. |..|.+ ++..|.+.|+  +|...|..... ...+|....    +..+.+ .+ .+.++++|+||.+.|.+.
T Consensus         1 ~~~~iGi-ggsGm~~la~~L~~~G~--~v~~~D~~~~~-~~~~l~~~g----i~~~~g-~~-~~~~~~~d~vV~spgi~~   70 (448)
T TIGR01082         1 KIHFVGI-GGIGMSGIAEILLNRGY--QVSGSDIAENA-TTKRLEALG----IPIYIG-HS-AENLDDADVVVVSAAIKD   70 (448)
T ss_pred             CEEEEEE-CHHHHHHHHHHHHHCCC--eEEEECCCcch-HHHHHHHCc----CEEeCC-CC-HHHCCCCCEEEECCCCCC
Confidence            5889999 999998 9999999999  99999975432 222343322    112111 23 355778999999988764

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=96.61  E-value=0.007  Score=52.28  Aligned_cols=62  Identities=21%  Similarity=0.329  Sum_probs=46.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ..++|+|+|- |.||+.++..+..-|.  +|..+|+....   .   +..    +..    .++++.++.||+|++...
T Consensus       144 ~gktvGIiG~-G~IG~~vA~~~~~fgm--~V~~~d~~~~~---~---~~~----~~~----~~l~ell~~sDvv~lh~P  205 (311)
T PRK08410        144 KGKKWGIIGL-GTIGKRVAKIAQAFGA--KVVYYSTSGKN---K---NEE----YER----VSLEELLKTSDIISIHAP  205 (311)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhcCC--EEEEECCCccc---c---ccC----cee----ecHHHHhhcCCEEEEeCC
Confidence            4469999999 9999999999987787  99999984211   0   111    111    257899999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	209
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		5e-64
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		2e-63
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		2e-60
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		4e-60
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		2e-49
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		9e-49
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		1e-48
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		1e-47
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		6e-18
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		1e-16
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		5e-16
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		9e-16
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		2e-15
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		3e-15
1guz_A	310	Structural Basis For Thermophilic Protein Stability		3e-15
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		4e-15
1guy_A	309	Structural Basis For Thermophilic Protein Stability		4e-15
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		5e-15
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		5e-15
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		6e-15
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		2e-13
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		8e-13
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		2e-12
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		2e-12
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		9e-12
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		1e-11
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		1e-11
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		2e-11
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		3e-11
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		3e-10
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		4e-10
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		4e-10
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		4e-10
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		5e-10
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		5e-10
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		1e-09
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		1e-09
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		2e-09
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		2e-09
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		2e-09
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		2e-09
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		2e-09
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		2e-09
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		2e-09
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		2e-09
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		2e-09
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		4e-09
1bdm_A	327	The Structure At 1.8 Angstroms Resolution Of A Sing		1e-08
5ldh_A	334	Structure Of The Active Ternary Complex Of Pig Hear		1e-08
1bmd_A	327	Determinants Of Protein Thermostability Observed In		1e-08
1iz9_A	327	Crystal Structure Of Malate Dehydrogenase From Ther		2e-08
1wze_A	327	Structural Basis For Alteration Of Cofactor Specifi		2e-08
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		1e-07
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		2e-07
1t2f_A	333	Human B Lactate Dehydrogenase Complexed With Nad+ A		3e-07
4h7p_A	345	Crystal Structure Of A Putative Cytosolic Malate De		3e-07
1i0z_A	333	Human Heart L-Lactate Dehydrogenase H Chain, Ternar		3e-07
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		3e-07
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		4e-07
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		4e-07
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		4e-07
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		5e-07
3d5t_A	331	Crystal Structure Of Malate Dehydrogenase From Burk		1e-06
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		1e-06
1ez4_A	318	Crystal Structure Of Non-Allosteric L-Lactate Dehyd		2e-06
2v65_A	331	Apo Ldh From The Psychrophile C. Gunnari Length = 3		3e-06
4mdh_A	334	Refined Crystal Structure Of Cytoplasmic Malate Deh		3e-06
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		3e-06
5mdh_A	333	Crystal Structure Of Ternary Complex Of Porcine Cyt		3e-06
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		3e-06
1b8p_A	329	Malate Dehydrogenase From Aquaspirillum Arcticum Le		4e-06
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		5e-06
1civ_A	385	Chloroplast Nadp-Dependent Malate Dehydrogenase Fro		6e-06
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		3e-05
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		3e-05
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		4e-05
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		4e-05
7mdh_A	375	Structural Basis For Light Acitvation Of A Chloropl		7e-05
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		1e-04
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		1e-04
3d0o_A	317	Crystal Structure Of Lactate Dehydrogenase From Sta		1e-04
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		1e-04
3h3j_A	317	Crystal Structure Of Lactate Dehydrogenase Mutant (		1e-04
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		3e-04
1ldb_A	317	Structure Determination And Refinement Of Bacillus		8e-04
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		8e-04

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score =  240 bits (612), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 123/185 (66%), Positives = 140/185 (75%), Gaps = 9/185 (4%)
Query: 2   RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
            SS LR     AK  GA G+        KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD
Sbjct: 27  ESSALRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYD 77
Query: 62  IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
           + N PGV AD+ H++T + V G++G  QL  AL   D++I+PAGVPRKPGMTRDDLF IN
Sbjct: 78  VVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKIN 137
Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
           AGIVK LC  IAK CP AIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA
Sbjct: 138 AGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRA 197
Query: 182 KTFYA 186
            TF A
Sbjct: 198 NTFVA 202

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/160 (71%), Positives = 131/160 (81%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG 86
           P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V G++G
Sbjct: 7   PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLG 66
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
             QL  AL   D++I+PAGVPRKPGMTRDDLF INAGIVK LC  IAK CP AIVN+ISN
Sbjct: 67  QQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN 126
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186
           PVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA TF A
Sbjct: 127 PVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVA 166

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score =  228 bits (581), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/157 (69%), Positives = 130/157 (82%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP+A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186
           ST+PI AEVFKK G YN  K+FGVTTLD+VRA  F A
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVA 158

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score =  227 bits (578), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 108/157 (68%), Positives = 130/157 (82%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI T++ V GY+G +Q
Sbjct: 30  KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQ 89
Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP A++ +I+NPVN
Sbjct: 90  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVN 149
Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186
           ST+PI AEVFKK G YN  K+FGVTTLD+VRA TF A
Sbjct: 150 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVA 186

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/159 (65%), Positives = 121/159 (76%), Gaps = 3/159 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G 
Sbjct: 5   KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAGE 64
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPG  R DLFN+NAGIVK L   IA  CPNA + +I+NP
Sbjct: 65  DPT-PALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNP 123
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186
           VN+TVPIAAEV KKAG Y+++KLFGVTTLDV+R++TF A
Sbjct: 124 VNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVA 162

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  189 bits (480), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 100/159 (62%), Positives = 120/159 (75%), Gaps = 3/159 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF A
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVA 159

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score =  189 bits (479), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/159 (62%), Positives = 120/159 (75%), Gaps = 3/159 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF A
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVA 159

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/159 (62%), Positives = 119/159 (74%), Gaps = 3/159 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++ + TF A
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVA 159

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINTRSE 80
           ++  +KV+V+GA G  G   A L+    L + + L DI      T G A D+      S 
Sbjct: 5   TIKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLE---ASP 59
Query: 81  VAGYMGN-----DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
           V G+  N     D    A  DSDVV+I AG+ RKPGM+RDDL   N+ I+K +   IAK+
Sbjct: 60  VQGFDANIIGTSDYADTA--DSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH 117
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
            PNAI+ +++NPV++   +   VFK+AG   E+ +     LD  R +TF A + N++V
Sbjct: 118 SPNAIIVVLTNPVDA---MTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSV 172

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 12/135 (8%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGH----INTRSEVA 82
           +K++++GA G IG  +ALL+    L   + ++DI      G A D+ H    I + +++ 
Sbjct: 15  KKISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIF 72
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G    +   + L++SDVVII AGVPRKP MTR DL  +NA IV  +   + KYCPNA V 
Sbjct: 73  G----ENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVI 128
Query: 143 MISNPVNSTVPIAAE 157
            I+NP+++ V    E
Sbjct: 129 CITNPLDAMVYYFKE 143

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 18/172 (10%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAAD------VGHINTRSEV 81
           K+ V+GA G +G   A  +    L   L L D+      G A D      VG  +T+  V
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTK--V 58
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G   ND    A  +SD+V+I AG+PRKPGMTR+DL ++NAGIV+++   I ++  N I+
Sbjct: 59  TG--SNDYADTA--NSDIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
            ++SNP++    +A   ++K+G   E+ +     LD  R ++F A +  V++
Sbjct: 115 VVVSNPLDIMTHVA---WQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSM 163

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 96/176 (54%), Gaps = 17/176 (9%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVA 82
           S+   K+A++G+ G IG  LA L  L  L   + L+DIA  TP G   D+      S V 
Sbjct: 4   SMARNKIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAE---SSPVD 58
Query: 83  GY-----MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
           G+       ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P
Sbjct: 59  GFDAKFTGANDY--AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAP 116
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
            A V  I+NP+++ V  A + F     +    + GV  LD  R + F + + NV+V
Sbjct: 117 EAFVICITNPLDAMV-WALQKFSGLPAHKVVGMAGV--LDSARFRYFLSEEFNVSV 169

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG 86
           RK   L  AG IG  LA L  +  L   + L+DIA     G A D+        V   + 
Sbjct: 5   RKKITLVGAGNIGGTLAHLALIKQL-GDVVLFDIAQGXPNGKALDLLQTCPIEGVDFKVR 63
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
                + LE+SDVVI+ AGVPRKPG +RDDL  IN  + + +   I   CPNA V  I+N
Sbjct: 64  GTNDYKDLENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVICITN 123
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYAGKANVNV 193
           P++    I     +K     + K+ G    LD  R +TF A + NV+V
Sbjct: 124 PLD----IXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSV 167

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 12/171 (7%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLAL----YDIANTPGVAADV--GHINTRSEVAG 83
           KV ++GA+G +G   ALL+   P +  L L    + I    G+  D+      TRS+   
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
           Y+ +D+  + +++SDVVII +GVPRK GM+R DL   NA IV      IA+ C   I  +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
           I+NPV+  +   A V  K   +   ++FG+ T LD +R K   A    V++
Sbjct: 121 ITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKVAIAKFFGVHI 167

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 91/172 (52%), Gaps = 18/172 (10%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD------VGHINTRSEV 81
           K+ V+GA G +G   A  +    L   L L D+      G A D      VG  +T+  V
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTK--V 58
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G   ND    A  +SD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+
Sbjct: 59  TG--SNDYADTA--NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
            ++SNP++    +A   + ++G   E+ +     LD  R ++F A +  V++
Sbjct: 115 IVVSNPLDIMTHVA---WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSM 163

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 65/105 (61%), Gaps = 3/105 (2%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLL 200
           AEV   +G   E+ +     LD  R +TF A +A V+V  +  +L
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAML 171

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 65/105 (61%), Gaps = 3/105 (2%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLL 200
           AEV   +G   E+ +     LD  R +TF A +A V+V  +  +L
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAML 171

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 65/105 (61%), Gaps = 3/105 (2%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLL 200
           AEV   +G   E+ +     LD  R +TF A +A V+V  +  +L
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAML 171

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 65/105 (61%), Gaps = 3/105 (2%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLL 200
           AEV   +G   E+ +     LD  R +TF A +A V+V  +  +L
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAML 171

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 18/172 (10%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD------VGHINTRSEV 81
           K+ V+GA G +G   A  +    L   L L D+      G   D      VG  +T+  +
Sbjct: 2   KITVIGA-GNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETGPVGLFDTK--I 58
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G   ND    A  DSD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+
Sbjct: 59  TG--SNDYADTA--DSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
            ++SNP++    +A   + ++G   E+ +     LD  R ++F A +  V++
Sbjct: 115 IVVSNPLDIMTHVA---WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSM 163

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMGN 87
           K+ ++G  G +G   A  + +      + L D+      G A D+ H    +  A     
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D     L+ SDVVI+ AGVP+KPG TR  L   NA ++K++   ++KY P++IV +++NP
Sbjct: 61  DY--ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP 118
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYA 186
           V+    +    F K    + +K+FG  T LD  R +T  A
Sbjct: 119 VD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIA 154

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 97/182 (53%), Gaps = 21/182 (11%)
Query: 37  AGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAGYMGNDQL 90
           AG +G   A    LN  V  +AL DIA     G A D+ H    I+   ++ G  G D  
Sbjct: 8   AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG--GADY- 64
Query: 91  GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS 150
              L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+   I +  P + + +++NP++ 
Sbjct: 65  -SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDV 123
Query: 151 TVPIAAEVFKKAGT-YNEKKLFGV-TTLDVVRAKT--FYAGKANVNVAGLLKLLTHKNLV 206
              I   ++K++G   NE  +FG+   LD  R K   + AG  N+  A ++    H + +
Sbjct: 124 MTYI---MWKESGKPRNE--VFGMGNQLDSQRLKERLYNAGARNIRRAWIIG--EHGDSM 176
Query: 207 FI 208
           F+
Sbjct: 177 FV 178

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 17/173 (9%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGH----INTRSEVA 82
           RK+AV+G+ G IG  +A ++  + L + + L+DIA     G A D+ H      + S+V 
Sbjct: 5   RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKV- 61
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
             +G D     +  SDVVII A +P +P   R +L   NA I+  +   + KYCPNA V 
Sbjct: 62  --IGTDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVI 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYAGKANVNVA 194
            I+NP++    +    F+K       K+ G+   LD  R +TF A    VN +
Sbjct: 119 CITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNAS 167

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 88/173 (50%), Gaps = 17/173 (9%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGH----INTRSEVA 82
           RK+AV+G+ G IG  +A ++  + L + + L+DIA     G A D+ H      + S+V 
Sbjct: 5   RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   ND     +  SDVVII A +P +P   R +L   NA I+  +   + KYCPNA V 
Sbjct: 63  GT--NDY--ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVI 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYAGKANVNVA 194
            I+NP++    +    F+K       K+ G+   LD  R +TF A    VN +
Sbjct: 119 CITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNAS 167

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 9/172 (5%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA--DVGHINTRSEVA 82
           +V   K+AV+GA G +G  LA       +   + L DIA     A   D+ H ++     
Sbjct: 4   TVKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTV 62
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
              G+D   +   D+D+V+I AG  +KPG +R +L      I+K +   + K  PNAI  
Sbjct: 63  SIDGSDD-PEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 121
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
           +I+NPV+    IA  V +K     E ++FG  T LD  R +   A +  VNV
Sbjct: 122 LITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNV 169

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 11/166 (6%)
Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG----VAADVGHINTRSEVAGYMG 86
           + +LGA G +G   A+++ +      L    IA TPG     A D+ H      V   + 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLLL---IARTPGKPQGEALDLAHAAAELGVDIRIS 57
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
                + +  SD+V++ AG+ RKPGMTR+ L   NA  + DL   I  Y  +AIV + +N
Sbjct: 58  GSNSYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
           PV++   +   ++KK G   E+ +     LD  R   + + K  V+
Sbjct: 118 PVDAMTYV---MYKKTGFPRERVIGFSGILDSARMAYYISQKLGVS 160

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 26  VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD--IANTPGVAADVGHINTRSEVAG 83
           + + K+ ++GAAG IG  +A    +  L   L LYD       GVA ++ H        G
Sbjct: 6   LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRH-------CG 58
Query: 84  YMG-----NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
           + G        + +AL D+  ++   G PRK GMTR+DL   NA I   L   I  YCP+
Sbjct: 59  FEGLNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPD 118
Query: 139 A-IVNMISNPVNST 151
              V +I NP + T
Sbjct: 119 CKHVIIIFNPADIT 132

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY--- 84
           KV V+GA G +G  +A  +    +   + + DI +    G A D   +   S + G+   
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALD---MRESSPIHGFDTR 57
Query: 85  -MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             G +  G   EDSDV II AG+PR PGM+RDDL   N  IV  +     +  P++ + +
Sbjct: 58  VTGTNDYGPT-EDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYAGKANVNVAGLLKLL 200
           ++NP++    +A E    A  +   ++ G+   LD  R ++F A + +V+V  +  LL
Sbjct: 117 VANPLDVMTYVAYE----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALL 170

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 11/174 (6%)
Query: 24  ESVPDR-KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-INTRS 79
           E V  R KVA++GA G +G   A  M L    + L L D+      G A D+ H +    
Sbjct: 2   EMVKSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMG 60
Query: 80  EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +++ Y G+      ++D DV+++ AG  RKPG TR DL   N  I K++   I KY  + 
Sbjct: 61  QMSLYAGD---YSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHG 117
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
           ++ ++SNPV+    I   + K +G    K +   T LD +R +   + K  V+V
Sbjct: 118 VILVVSNPVD---IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDV 168

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 14/173 (8%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N  +     
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L  SDVVI+ AG  + PG       RDDL  +N  I+ ++   I K CPNA
Sbjct: 61  VSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANV 191
            + +++NPV+  V    ++  +     + K+ G+   LD  R K + + K NV
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNV 169

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 22/177 (12%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N    +  +
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG       RDDL  +N  I+ ++   I K 
Sbjct: 61  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANV 191
           CPNA + +++NPV+  V    ++  +     + K+ G+   LD  R K + + K NV
Sbjct: 117 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNV 169

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 22/177 (12%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N    +  +
Sbjct: 2   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG       RDDL  +N  I+ ++   I K 
Sbjct: 60  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANV 191
           CPNA + +++NPV+  V    ++  +     + K+ G+   LD  R K + + K NV
Sbjct: 116 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNV 168

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 22/177 (12%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N    +  +
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG       RDDL  +N  I+ ++   I K 
Sbjct: 61  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANV 191
           CPNA + +++NPV+    +  ++  +     + K+ G+   LD  R K + + K NV
Sbjct: 117 CPNAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNV 169

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 22/177 (12%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N    +  +
Sbjct: 2   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG       RDDL  +N  I+ ++   I K 
Sbjct: 60  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANV 191
           CPNA + +++NPV+  V    ++  +     + K+ G+   LD  R K + + K NV
Sbjct: 116 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNV 168

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 14/173 (8%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + ++DI  N P G A D  H N  +     
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVMFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L+D+DVVI+ AG  + PG       RDDL  +N  I+ ++   I   CPNA
Sbjct: 61  VSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANV 191
            + +++NPV+  V    ++  +     + K+ G+   LD  R K + + K NV
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNV 169

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
           +KVA++G+ G IG  +  L  L  L + + LYD+      G A D+ H+ +  +      
Sbjct: 10  KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 68  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127
Query: 141 VNMISNPVNSTVPIAAE 157
           + +++NP++  V +  E
Sbjct: 128 IIVVTNPLDCMVKVMCE 144

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
           +KVA++G+ G IG  +  L  L  L + + LYD+      G A D+ H+ +  +      
Sbjct: 8   KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 65
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 66  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 125
Query: 141 VNMISNPVNSTVPIAAE 157
           + +++NP++  V +  E
Sbjct: 126 IIVVTNPLDCMVKVMCE 142

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 14/172 (8%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +K+A++G+ G IG  +  L  L  L + + L+D+      G A D     + ++    + 
Sbjct: 9   KKIAMIGS-GMIGGTMGYLCVLREL-ADVVLFDVVTGMPEGKALDDSQATSIADTNVSVT 66
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           +    + +  SDVVII AG+ + PG      +R+DL   NA I++++   + KYCP A V
Sbjct: 67  SANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFV 126
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYAGKANVN 192
            +++NP++  V    + F +A    +  + G+   LD  R + F A +  ++
Sbjct: 127 IVVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEIS 174

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
           +KVA++G+ G IG  +  L  L  L + + LYD+      G A D+ H+ +  +      
Sbjct: 10  KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 68  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127
Query: 141 VNMISNPVNSTVPIAAE 157
           + +++NP++  V +  E
Sbjct: 128 IIVVTNPLDCMVKVMXE 144

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 14/172 (8%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +K+A++G+ G IG  +  L  L  L + + L+D+      G A D     + ++    + 
Sbjct: 9   KKIAMIGS-GMIGGTMGYLCVLREL-ADVVLFDVVTGMPEGKALDDSQATSIADTNVSVT 66
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           +    + +  SDVVII AG+ + PG      +R+DL   NA I++++   + KYCP A V
Sbjct: 67  SANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFV 126
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYAGKANVN 192
            +++NP++  V    + F +A    +  + G+   LD  R + F A +  ++
Sbjct: 127 IVVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEIS 174

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             NA I++D+ S++ ++  + I    SNPV+
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 123

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             NA I++D+ S++ ++  + I    SNPV+
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 123

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 20/176 (11%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TRSE 80
           P  K+ ++G+ G IG  +A L+    L   + ++D+  N P G A D  H N    +  +
Sbjct: 2   PKPKIVLVGS-GMIGGVMATLIVQKNL-GDVVMFDVVKNMPQGKALDTSHSNVMAYSNCK 59
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKY 135
           V G    D L  A    DVVI+ AG  + PG       RDDL  +N  I+ ++   I   
Sbjct: 60  VTGSNSYDDLKGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNL 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANV 191
           CPNA + +++NPV+  V +   +F+ +G    K +     LD  R K + + K NV
Sbjct: 116 CPNAFIIVVTNPVDVMVQL---LFEHSGVPKNKIIGLGGVLDTSRLKYYISQKLNV 168

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             NA I++D+ S++ ++  + I    SNPV+
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 123

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 93
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             NA I++D+ S++ ++  + I    SNPV+
Sbjct: 94  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 124

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 93
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             NA I++D+ S++ ++  + I    SNPV+
Sbjct: 94  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 124

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N  +     
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L  SDVVI+ AG  + PG       R DL  +N  I+ ++   I K CPNA
Sbjct: 61  VSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANV 191
            + +++NPV+  V    ++  +     + K+ G+   LD  R K + + K NV
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNV 169

>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 21/193 (10%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANT----PGVAADVGHINTR 78
           +VAV GAAG IG  L        +L K  P++  L L +I        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+    
Sbjct: 63  PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 139 AI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLL 197
            + V ++ NP N+   IA   +K A   N +    +T LD  RAK   A K    V  + 
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179
Query: 198 KLLT---HKNLVF 207
           ++     H +++F
Sbjct: 180 RMTVWGNHSSIMF 192

>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 7/170 (4%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVA 82
           ++PD K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H +   +  
Sbjct: 18  TIPDNKITVVGV-GQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTP 76
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
             + N        +S +V++ AGV ++ G +R +L   N  + K +   I KY PN I+ 
Sbjct: 77  KIVANKDYS-VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIII 135
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
           ++SNPV+    +A   +K +G    + +     LD  R +     K  V+
Sbjct: 136 VVSNPVDILTYVA---WKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVH 182

>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 18/187 (9%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANT----PGVAADVGHINTR 78
           +VAV GAAG IG  L        +L K  P++  L L +I        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+    
Sbjct: 63  PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 139 AI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLL 197
            + V ++ NP N+   IA   +K A   N +    +T LD  RAK   A K    V  + 
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179
Query: 198 KLLTHKN 204
           ++    N
Sbjct: 180 RMTVWGN 186

>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 18/187 (9%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANT----PGVAADVGHINTR 78
           +VAV GAAG IG  L        +L K  P++  L L +I        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+    
Sbjct: 63  PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 139 AI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLL 197
            + V ++ NP N+   IA   +K A   N +    +T LD  RAK   A K    V  + 
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179
Query: 198 KLLTHKN 204
           ++    N
Sbjct: 180 RMTVWGN 186

>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 20/188 (10%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        +L K  P++ +L    + +     A  G +    +  
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL----LGSERSFQALEGVVMELEDCA 61
Query: 81  ---VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+   
Sbjct: 62  FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGL 196
             + V ++ NP N+   IA   +K A   N +    +T LD  RAK   A K    V  +
Sbjct: 122 KDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRI 178
Query: 197 LKLLTHKN 204
            ++    N
Sbjct: 179 RRMTVWGN 186

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           L D+ VVI+ AG  +KPG +R DL   NA I ++L   I +  P+A++ + SNPV+    
Sbjct: 65  LADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTD 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
           +A ++        +  +   T LD  R +   A  A V+
Sbjct: 125 LATQLAP-----GQPVIGSGTVLDSARFRHLMAQHAGVD 158

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH---INTRSEVA 82
           D +  +L   G +G   A  M L  +   + + DI    T G A D+ +     +  ++ 
Sbjct: 8   DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY 67
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
               +D      +D+D+V+I AG P+KPG TR DL N N  I+K +   I     N I  
Sbjct: 68  SAEYSDA-----KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
           + +NPV+    +    +K +G    + +   T+LD  R +   A   NV+
Sbjct: 123 VAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVD 169

>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 15/174 (8%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH----INTR 78
           +VP+ K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H    + T 
Sbjct: 17  TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTP 75
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             VA     D+      +S +V++ AGV ++ G +R +L   N  + K +   I KY P+
Sbjct: 76  KIVA-----DKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPD 130
Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
            I+ ++SNPV+    +    +K +G    + +     LD  R +   A K  ++
Sbjct: 131 CIIIVVSNPVDILTYVT---WKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIH 181

>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIANTPGVAADVGHINTRSEVAGY 84
           KVAV GAAG IG  L  L+    L+       L L DI   P + A  G +    E   +
Sbjct: 26  KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDI--EPALKALAG-VEAELEDCAF 82
Query: 85  MGNDQL------GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CP 137
              D++        A +   + I+    PRK GM R DL  +NA I K+   AIA     
Sbjct: 83  PLLDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAAS 142
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKA-GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGL 196
           +  V ++ NP N+   I   + K A G  N + +  +T LD  RA +  A KA V V+ +
Sbjct: 143 DCRVVVVGNPANTNALI---LLKSAQGKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQV 199
Query: 197 LKLLTHKN 204
             ++   N
Sbjct: 200 RNVIIWGN 207

>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 15/174 (8%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH----INTR 78
           +VP+ K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H    + T 
Sbjct: 17  TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTP 75
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             VA     D+      +S +V++ AGV ++ G +R +L   N  + K +   I KY P+
Sbjct: 76  KIVA-----DKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPD 130
Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
            I+ ++SNPV+    +    +K +G    + +     LD  R +   A K  ++
Sbjct: 131 CIIIVVSNPVDILTYVT---WKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIH 181

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH---INTRSEVA 82
           D +  +L   G +G   A  M L  +   + + DI    T G A D+ +     +  ++ 
Sbjct: 7   DHQKVILVGDGAVGSSYAFAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY 66
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
               +D      +D+D+V+I AG P++PG TR DL N N  I+K +   I     N I  
Sbjct: 67  SAEYSDA-----KDADLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFL 121
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
           + +NPV+    +    +K +G    + +   T+LD  R +   A   NV+
Sbjct: 122 VAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVD 168

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH----IN 76
            E  P  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + 
Sbjct: 14  EEQTPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLR 72
Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           T   V+G   N        +S +VII AG  ++ G +R +L   N  I K +   + KY 
Sbjct: 73  TPKIVSGKDYN-----VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS 127
Query: 137 PNAIVNMISNPVNSTVPIAAEV 158
           PN  + ++SNPV+    +A ++
Sbjct: 128 PNCKLLIVSNPVDILTYVAWKI 149

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH----IN 76
            E  P  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + 
Sbjct: 14  EEQTPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLR 72
Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           T   V+G   N        +S +VII AG  ++ G +R +L   N  I K +   + KY 
Sbjct: 73  TPKIVSGKDYN-----VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS 127
Query: 137 PNAIVNMISNPVNSTVPIAAEV 158
           PN  + ++SNPV+    +A ++
Sbjct: 128 PNCKLLIVSNPVDILTYVAWKI 149

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 13/170 (7%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH---INTRSEVA 82
           D +  +L   G +G   A  M L  +   + + DI    T G A D+       +  ++ 
Sbjct: 8   DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIY 67
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
               +D      +D+D+V+I AG P+KPG TR DL N N  I+K +   I     N I  
Sbjct: 68  SAEYSDA-----KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
           + +NPV+    +    +K +G    + +   T+LD  R +   A   NV+
Sbjct: 123 VAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVD 169

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH----IN 76
            E VP  K+ V+G  G +G   A+ + +  L   +AL D+      G   D+ H    + 
Sbjct: 15  EEHVPHNKITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLR 73
Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           T   V+G   N        +S +V+I AG  ++ G +R +L   N  I K +   I KY 
Sbjct: 74  TPKIVSGKDYN-----VTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYS 128
Query: 137 PNAIVNMISNPVNSTVPIAAEV 158
           PN  + ++SNPV+    +A ++
Sbjct: 129 PNCKLLVVSNPVDILTYVAWKI 150

>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From Burkholderia Pseudomallei Length = 331

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 87/197 (44%), Gaps = 18/197 (9%)
Query: 20  GYSSESVPDRKVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDI----ANTPGV 68
           G  S + P ++VAV GAAG I   L        LL K  P++  L L D+    A   GV
Sbjct: 1   GPGSMAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVI--LQLLDLPQAQAAVKGV 58
Query: 69  AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDL 128
             ++        +AG +  D    A +D+DV ++    PR  GM R DL + NA I    
Sbjct: 59  VMELDDC-AFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQ 117
Query: 129 CSAIAKYCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAG 187
            +A+ +     + V ++ NP N+   IA    K A    +K    +  LD  RA +  A 
Sbjct: 118 GAALNEVASRDVKVLVVGNPANTNAYIA---MKSAPDLPKKNFTAMLRLDHNRALSQLAA 174
Query: 188 KANVNVAGLLKLLTHKN 204
           K+   VA + KL    N
Sbjct: 175 KSGKPVASIEKLAVWGN 191

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 12/142 (8%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH----IN 76
            E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + 
Sbjct: 14  EEHVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLR 72
Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           T   V+G    D    A  +S +VII AG  ++ G +R +L   N  I K +   + KY 
Sbjct: 73  TPKIVSG---KDYSVTA--NSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS 127
Query: 137 PNAIVNMISNPVNSTVPIAAEV 158
           P+  + ++SNPV+    +A ++
Sbjct: 128 PHCKLLVVSNPVDILTYVAWKI 149

>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 7/170 (4%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82
           S+P+ +  VL   G +G   A  M    +     + D+    T G A D+      +   
Sbjct: 1   SMPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPK 60
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
                +      +D+D+V+I AG P+KPG +R DL N N  I+  +   +     + I  
Sbjct: 61  KIYSGEY--SDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
           + +NPV+    +    +K +G   E+ +   T+LD  R +     + NV+
Sbjct: 119 VAANPVDI---LTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVD 165

>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 11/152 (7%)
Query: 45  ALLMKLNPLVSRLALYDIANTP--GVAADVGH--INTRSEVAGYMGNDQLGQALEDSDVV 100
           A+ + L  L   LA+ D+      G   D+ H  +  ++++ G    D+      +S VV
Sbjct: 36  AISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFLKTKIVG----DKDYSVTANSKVV 91
Query: 101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK 160
           ++ AG  ++ G +R +L   N  I K +   I KY PN I+ ++SNPV+    +A   +K
Sbjct: 92  VVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVA---WK 148
Query: 161 KAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
            +G    + +   T LD  R +     K +++
Sbjct: 149 LSGFPRHRVIGSGTNLDSARFRHLIGEKLHLH 180

>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 20/175 (11%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA 82
           +V V GAAG I   L       ++  K  P++  L L DI  TP +    G +    + A
Sbjct: 6   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDI--TPMMGVLDGVLMELQDCA 61
Query: 83  -----GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
                  +  D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY  
Sbjct: 62  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 121
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANV 191
            ++ V ++ NP N+    A+   K A +  ++    +T LD  RAK   A K  V
Sbjct: 122 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGV 173

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSE 80
            E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H +   +
Sbjct: 15  EEQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLK 73
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
               + +        +S +VII AG  ++ G +R +L   N  I K +   + KY P   
Sbjct: 74  TPKIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 132
Query: 141 VNMISNPVNSTVPIAAEV 158
           + ++SNPV+    +A ++
Sbjct: 133 LLIVSNPVDILTYVAWKI 150

>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 20/175 (11%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA 82
           +V V GAAG I   L       ++  K  P++  L L DI  TP +    G +    + A
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDI--TPMMGVLDGVLMELQDCA 60
Query: 83  -----GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
                  +  D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY  
Sbjct: 61  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANV 191
            ++ V ++ NP N+    A+   K A +  ++    +T LD  RAK   A K  V
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGV 172

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSE 80
            E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H +   +
Sbjct: 14  EEQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLK 72
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
               + +        +S +VII AG  ++ G +R +L   N  I K +   + KY P   
Sbjct: 73  TPKIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 131
Query: 141 VNMISNPVNSTVPIAAEV 158
           + ++SNPV+    +A ++
Sbjct: 132 LLIVSNPVDILTYVAWKI 149

>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 79/188 (42%), Gaps = 18/188 (9%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG I   L        +L K  P++  L L +I N     A  G +    +  
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEIDDCA 64
Query: 81  ---VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYC 136
              +AG   +     A +D+DV ++    PR PGM R DL   NA I      AI A   
Sbjct: 65  FPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVAS 124
Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGL 196
            N  V ++ NP N+   IA    K A +   K    +  LD  RA +  A K    V+ +
Sbjct: 125 RNIKVLVVGNPANTNAYIA---MKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSI 181
Query: 197 LKLLTHKN 204
            KL    N
Sbjct: 182 EKLFVWGN 189

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 14/149 (9%)
Query: 50  LNPLVSRLALYDIANTP--GVAADVGH----INTRSEVAGYMGNDQLGQALEDSDVVIIP 103
           L  L   LAL D+      G A D+ H    + T   VA     D+      +S VV++ 
Sbjct: 41  LKDLTDELALVDVMEDKLKGEAMDLQHGSLFLKTHKIVA-----DKDYSVTANSKVVVVT 95
Query: 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG 163
           AG  ++ G +R +L   N  I K +   I KY PN I+ ++SNPV+    +A   +K +G
Sbjct: 96  AGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVDILTYVA---WKLSG 152
Query: 164 TYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
               + +   T LD  R +     K  ++
Sbjct: 153 LPRNRVIGSGTNLDSARFRHLMGEKLGIH 181

>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYCPNAIVNMISNPVNS 150
           +  +D++  ++    PR PGM R DL +IN  I  +   A+ A   PN  V ++ NP N+
Sbjct: 114 EIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNT 173
Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT--------FYAGKANVNVAG 195
              I     K A     K    +T LD  RAK         FY   +NV + G
Sbjct: 174 NALIC---LKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWG 223

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 10/169 (5%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVA++GA G +G   A  +    +   L + D+ N      DV  +N     A       
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHGKAFAPQPVKTS 64
Query: 90  LG--QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
            G  +  +D+D+V I AG  +KPG TR +L   N  I K + S +     + I  + +NP
Sbjct: 65  YGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP 124
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK---TFYAGKANVNV 193
           V+    +    +K +G   E+ +   TTLD  R +   + Y G A  NV
Sbjct: 125 VD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNV 170

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 10/170 (5%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVA++GA G +G   A  +    +   L + D+ N      DV  +N     A       
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHGKAFAPQPVKTS 64
Query: 90  LG--QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
            G  +  +D+D+V I AG  +KPG TR +L   N  I K + S +     + I  + +NP
Sbjct: 65  YGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP 124
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK---TFYAGKANVNVA 194
           V+    +    +K +G   E+ +   TTLD  R +   + Y G A  NV 
Sbjct: 125 VD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVC 171

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 12/151 (7%)
Query: 14  KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAAD 71
           K  G    S E     K+ V+G  G +G   A+ + +  L   +AL D+      G   D
Sbjct: 7   KLIGHLATSQEPRSYNKITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMD 65
Query: 72  VGH----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKD 127
           + H    ++T   V+G   +   G     S +V+I AG  ++ G +R +L   N  I K 
Sbjct: 66  LQHGSLFLHTAKIVSGKDYSVSAG-----SKLVVITAGARQQEGESRLNLVQRNVNIFKF 120
Query: 128 LCSAIAKYCPNAIVNMISNPVNSTVPIAAEV 158
           +   I K+ P+ I+ ++SNPV+    +A ++
Sbjct: 121 IIPNIVKHSPDCIILVVSNPVDVLTYVAWKL 151

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 12/151 (7%)
Query: 14  KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAAD 71
           K  G    S E     K+ V+G  G +G   A+ + +  L   +AL D+      G   D
Sbjct: 6   KLIGHLATSQEPRSYNKITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMD 64
Query: 72  VGH----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKD 127
           + H    ++T   V+G   +   G     S +V+I AG  ++ G +R +L   N  I K 
Sbjct: 65  LQHGSLFLHTAKIVSGKDYSVSAG-----SKLVVITAGARQQEGESRLNLVQRNVNIFKF 119
Query: 128 LCSAIAKYCPNAIVNMISNPVNSTVPIAAEV 158
           +   I K+ P+ I+ ++SNPV+    +A ++
Sbjct: 120 IIPNIVKHSPDCIILVVSNPVDVLTYVAWKL 150

>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast Enzyme. The Structure Of Sorghum Nadp-Malate Dehydrogenase In Its Oxidized Form Length = 375

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 47/113 (41%), Gaps = 12/113 (10%)
Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYCPNAIVNMISNPVNS 150
           +  ED D  ++    PR PGM R  L +IN  I  D   A+ A    N  V ++ NP N+
Sbjct: 104 EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 163
Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT--------FYAGKANVNVAG 195
              I     K A     K    +T LD  RAK         FY   +NV + G
Sbjct: 164 NALIC---LKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWG 213

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186
           +A   ++ +G    + +   T LD  R +   A
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRALLA 154

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186
           +A   ++ +G    + +   T LD  R +   A
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRALLA 154

>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 7/155 (4%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KV ++G  G +G   A  +    +V  L + D+ +T  V  DV  +   +  +      +
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVRVK 65
Query: 90  LGQA--LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
            G+     D+D+V+I AG  +KPG TR DL + N  I K +   +     + I  + +NP
Sbjct: 66  AGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNP 125
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
           V+    +A   +K +G   E+ +   T LD  R +
Sbjct: 126 VDI---LAYATWKFSGLPKERVIGSGTILDSARFR 157

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA 186
           +A   ++ +G    + +   T LD  R +   A
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRALLA 154

>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 7/155 (4%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KV ++G  G +G   A  +    +V  L + D+ +T  V  DV  +   +  +      +
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVRVK 65
Query: 90  LGQA--LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
            G+     D+D+V+I AG  +KPG TR DL + N  I K +   +     + I  + +NP
Sbjct: 66  AGEYSDCHDADLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNP 125
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
           V+    +A   +K +G   E+ +   T LD  R +
Sbjct: 126 VDI---LAYATWKFSGLPKERVIGSGTILDSARFR 157

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IA 155
           +A
Sbjct: 125 VA 126

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           D+D+V+I AG  +KPG TR DL + N  I + +  ++       +  + +NPV+    + 
Sbjct: 74  DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILT 130
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAK 182
              +K +G  +E+ +   T LD  R +
Sbjct: 131 YATWKFSGLPHERVIGSGTILDTARFR 157

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           D+D+V+I AG  +KPG TR DL + N  I + +  ++       +  + +NPV+    + 
Sbjct: 74  DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILT 130
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAK 182
              +K +G  +E+ +   T LD  R +
Sbjct: 131 YATWKFSGLPHERVIGSGTILDTARFR 157

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	5e-98
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	4e-97
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	1e-91
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	5e-37
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	2e-31
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	2e-31
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	3e-31
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	1e-30
3tl2_A	315	Malate dehydrogenase; center for structural genomi	2e-30
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	5e-30
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	6e-30
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	1e-29
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	1e-29
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	2e-29
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	2e-29
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	4e-29
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	2e-28
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	2e-28
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	4e-28
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	4e-28
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	5e-28
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	6e-28
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	7e-28
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	1e-27
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	1e-27
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	1e-27
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	3e-27
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	7e-27
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	2e-26
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	2e-26
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	4e-26
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	4e-26
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	3e-25
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	7e-25
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	2e-24
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	4e-23
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	1e-07
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	2e-07
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	4e-07
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	3e-06

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  286 bits (733), Expect = 5e-98
 Identities = 110/165 (66%), Positives = 133/165 (80%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP+A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
           ST+PI AEVFKK G YN  K+FGVTTLD+VRA  F A    ++ A
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPA 166

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  284 bits (728), Expect = 4e-97
 Identities = 115/173 (66%), Positives = 134/173 (77%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
           +    P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V
Sbjct: 2   AKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVV 61

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G++G  QL  AL   D++I+PAGVPRKPGMTRDDLF INAGIVK LC  IAK CP AIV
Sbjct: 62  RGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIV 121

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
           N+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA TF A    ++  
Sbjct: 122 NLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR 174

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  270 bits (692), Expect = 1e-91
 Identities = 99/167 (59%), Positives = 120/167 (71%), Gaps = 3/167 (1%)

Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           +    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 61  EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF A        
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPG 167

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  130 bits (330), Expect = 5e-37
 Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 9/169 (5%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGYMG 86
            K+ ++GAAG IG  +A    +  L   L LYD       GVA ++ H     E      
Sbjct: 9   EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRH--CGFEGLNLTF 66

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI-VNMIS 145
              + +AL D+  ++   G PRK GMTR+DL   NA I   L   I  YCP+   V +I 
Sbjct: 67  TSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF 126

Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
           NP + T  +       +G     ++  +  LD  R ++  A    +  +
Sbjct: 127 NPADITGLVT---LIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQS 171

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  115 bits (290), Expect = 2e-31
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 19/173 (10%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV----AADVGHINTRSEVAGYM 85
           KV+V+GAAG +G      + L  +   +   DI +        AAD  H         Y 
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH------GIAYD 55

Query: 86  GNDQLGQA----LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            N ++ Q        SDVV+I AG+PR+PG TR DL   NA I++D+ S++ ++  + I 
Sbjct: 56  SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
              SNPV+    +      +AG  + +++ G    LD  R +   + + +  V
Sbjct: 116 LTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPV 164

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  115 bits (290), Expect = 2e-31
 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 16/173 (9%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGH----INTRSEV 81
           KV ++GA+G +G   ALL+   P +  L L    +      G+  D+        + + +
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
                 +   + +++SDVVII +GVPRK GM+R DL   NA IV      IA+ C   I 
Sbjct: 62  YVESDENL--RIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF 119

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
            +I+NPV+    +          +   ++FG+ T LD +R K   A    V++
Sbjct: 120 -VITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHI 167

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  114 bits (289), Expect = 3e-31
 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 16/171 (9%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
           KV V+GA G +G  +A  +    +   + + DI +    G A D+          + V G
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG 60

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
              ND      EDSDV II AG+PR PGM+RDDL   N  IV  +     +  P++ + +
Sbjct: 61  --TNDY--GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
           ++NP++    +   V  +A  +   ++ G+   LD  R ++F A + +V+V
Sbjct: 117 VANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSV 163

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  113 bits (285), Expect = 1e-30
 Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 16/171 (9%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
           K+ V+GA G +G   A  +    L   L L D+      G A D+          ++V G
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
              ND       +SD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+ +
Sbjct: 61  --SNDY--ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
           +SNP++    I   V        ++++ G+   LD  R ++F A +  V++
Sbjct: 117 VSNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSM 163

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  112 bits (283), Expect = 2e-30
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 19/181 (10%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA----DVGH--- 74
           ++ ++  +KV+V+GA G  G   A L+    L + + L DI            D+     
Sbjct: 2   NAMTIKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASP 59

Query: 75  -INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
                + + G   +D       DSDVV+I AG+ RKPGM+RDDL   N+ I+K +   IA
Sbjct: 60  VQGFDANIIG--TSDY--ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIA 115

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           K+ PNAI+ +++NPV+           K   + ++++ G    LD  R +TF A + N++
Sbjct: 116 KHSPNAIIVVLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLS 171

Query: 193 V 193
           V
Sbjct: 172 V 172

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  111 bits (280), Expect = 5e-30
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 17/172 (9%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           +K++++GA G +G   A  +    L   + L DI      G A D+            V 
Sbjct: 3   KKISIIGA-GFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   N+       +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ 
Sbjct: 61  G--TNNY--ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVII 116

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
           M++NP++        +  +   + ++++ G    LD  R +TF A +A V+V
Sbjct: 117 MVNNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSV 164

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  111 bits (280), Expect = 6e-30
 Identities = 58/172 (33%), Positives = 87/172 (50%), Gaps = 17/172 (9%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           RK+AV+G+ G IG  +A ++  + L + + L+DIA     G A D+ H      + S+V 
Sbjct: 5   RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   +D     +  SDVVII A +P +P   R +L   NA I+  +   + KYCPNA V 
Sbjct: 63  G--TDDY--ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVI 118

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
            I+NP++    +    F+K       K+ G+   LD  R +TF A    VN 
Sbjct: 119 CITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNA 166

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  110 bits (278), Expect = 1e-29
 Identities = 65/172 (37%), Positives = 93/172 (54%), Gaps = 17/172 (9%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           +K+ ++GA G IG  LA L  +  L   + L+DIA     G A D+           +V 
Sbjct: 6   KKITLVGA-GNIGGTLAHLALIKQL-GDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVR 63

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   ND   + LE+SDVVI+ AGVPRKPGM+RDDL  IN  +++ +   I   CPNA V 
Sbjct: 64  G--TNDY--KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVI 119

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
            I+NP++    I   + +K     + K+ G+   LD  R +TF A + NV+V
Sbjct: 120 CITNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSV 167

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  110 bits (277), Expect = 1e-29
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
           K+  +GA G +G   A    LN  V  +AL DIA     G A D+ H    I+   ++ G
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             G D     L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+   I +  P + + +
Sbjct: 61  --GADY--SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
           ++NP++    +   +  K       ++FG+   LD  R K         N+
Sbjct: 117 VTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNI 163

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  110 bits (277), Expect = 2e-29
 Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 17/178 (9%)

Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
           +  +  +K++++GA G IG  +ALL+    L   + ++DI      G A D+ H    I 
Sbjct: 9   NTVIMRKKISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIG 66

Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           + +++ G   N+   + L++SDVVII AGVPRKP MTR DL  +NA IV  +   + KYC
Sbjct: 67  SPAKIFG--ENNY--EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC 122

Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
           PNA V  I+NP++         FK+       K+ G+   LD  R +   +    V  
Sbjct: 123 PNAFVICITNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKP 176

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  110 bits (277), Expect = 2e-29
 Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 17/172 (9%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
            K+A++G+ G IG  LA L  L  L   + L+DIA     G   D+          ++  
Sbjct: 8   NKIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFT 65

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P A V 
Sbjct: 66  G--ANDY--AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVI 121

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
            I+NP++          +K       K+ G+   LD  R + F + + NV+V
Sbjct: 122 CITNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSV 169

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  109 bits (275), Expect = 4e-29
 Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 18/172 (10%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +KV ++G  G +G   A  M    +     + D+    T G A D+           +  
Sbjct: 6   QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLED------AQAFTA 58

Query: 87  NDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
             ++        +D+D+V+I AG P+KPG +R DL N N  I+  +   +     + I  
Sbjct: 59  PKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
           + +NPV+    I      K   + ++++ G  T+LD  R +     + NV+ 
Sbjct: 119 VAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDP 166

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  107 bits (271), Expect = 2e-28
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 18/172 (10%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +KV ++G  G +G   A  M L  +   + + DI    T G A D+ +         +  
Sbjct: 10  QKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSN------ALPFTS 62

Query: 87  NDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
             ++        +D+D+V+I AG P+KPG TR DL N N  I+K +   I     N I  
Sbjct: 63  PKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
           + +NPV+    I      K   + + ++ G  T+LD  R +   A   NV+ 
Sbjct: 123 VAANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDA 170

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  107 bits (270), Expect = 2e-28
 Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 21/174 (12%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
            KV ++G  G +G   A  +    +V  L + D+      G   D+ H         R +
Sbjct: 7   NKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVK 65

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
              Y           D+D+V+I AG  +KPG TR DL + N  I K +   +     + I
Sbjct: 66  AGEY-------SDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGI 118

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
             + +NPV+    I A    K     ++++ G  T LD  R +   +   +V  
Sbjct: 119 FLVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAP 168

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  106 bits (268), Expect = 4e-28
 Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 21/174 (12%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
            KVA++GA G +G   A  +    +   L + D+      G   D+ H         ++ 
Sbjct: 6   NKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTS 64

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
              Y       +  +D+D+V I AG  +KPG TR +L   N  I K + S +     + I
Sbjct: 65  YGTY-------EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGI 117

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
             + +NPV+    I      K     ++++ G  TTLD  R +   +       
Sbjct: 118 FLVATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAP 167

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  106 bits (268), Expect = 4e-28
 Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 21/181 (11%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----I 75
           +  +V   K+AV+GA G +G  LA       +   + L DIA         D+ H     
Sbjct: 1   AETTVKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFY 59

Query: 76  NTRSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
            T S              +   D+D+V+I AG  +KPG +R +L      I+K +   + 
Sbjct: 60  PTVSIDGSDDP-------EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLV 112

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           K  PNAI  +I+NPV+    IA  V +K     E ++FG  T LD  R +   A +  VN
Sbjct: 113 KVAPNAIYMLITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVN 168

Query: 193 V 193
           V
Sbjct: 169 V 169

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  106 bits (267), Expect = 5e-28
 Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 21/174 (12%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
            +V V+GA G +G      +    +   + L D       G A D  H            
Sbjct: 7   ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW 65

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
              Y           D+D+V+I AG  +KPG TR DL + N  I + +  ++       +
Sbjct: 66  HGDY-------DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGL 118

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
             + +NPV+    I      K      +++ G  T LD  R +       +V  
Sbjct: 119 FLVATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAP 168

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  106 bits (266), Expect = 6e-28
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 17/170 (10%)

Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAGY 84
           + +LGA G +G   A+++ +      L L         G A D+ H    +     ++G 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG- 58

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144
             N    + +  SD+V++ AG+ RKPGMTR+ L   NA  + DL   I  Y  +AIV + 
Sbjct: 59  -SNSY--EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVIT 115

Query: 145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
           +NPV+        V  K   +  +++ G    LD  R   + + K  V+ 
Sbjct: 116 TNPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSF 161

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  106 bits (266), Expect = 7e-28
 Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 18/176 (10%)

Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82
                KVA++GA G +G   A  M L    + L L D+      G A D+ H        
Sbjct: 4   VKSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH------GL 56

Query: 83  GYMGNDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
            +MG   L       ++D DV+++ AG  RKPG TR DL   N  I K++   I KY  +
Sbjct: 57  PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNH 116

Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
            ++ ++SNPV+    I   + +K       K+ G  T LD +R +   + K  V+V
Sbjct: 117 GVILVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDV 168

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  105 bits (265), Expect = 1e-27
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 18/171 (10%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
           K+ ++G  G +G   A  + +      + L D+      G A D+ H         +   
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH------GTPFTRR 54

Query: 88  DQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             +       L+ SDVVI+ AGVP+KPG TR  L   NA ++K++   ++KY P++IV +
Sbjct: 55  ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
           ++NPV+    +    F K    + +K+FG  T LD  R +T  A     + 
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSP 161

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  105 bits (264), Expect = 1e-27
 Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 18/171 (10%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
           KV ++G+ G +G   A  + L  +   + L D+        A D+ H         +   
Sbjct: 2   KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILH------ATPFAHP 54

Query: 88  DQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             +       LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ +
Sbjct: 55  VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
            +NPV+    +  +V          ++ G  T LD  R +   A    V  
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAP 161

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  105 bits (264), Expect = 1e-27
 Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 21/181 (11%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----I 75
           S E     K+ V+G    +G   A+ + +  L   +AL D+      G   D+ H    +
Sbjct: 15  SQEPRSYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFL 73

Query: 76  NTRSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
           +T   V+G  Y            S +V+I AG  ++ G +R +L   N  I K +   I 
Sbjct: 74  HTAKIVSGKDY-------SVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIV 126

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           K+ P+ +  +             +   K       ++ G    LD  R +     +  V+
Sbjct: 127 KHSPDCLKELHPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVH 182

Query: 193 V 193
            
Sbjct: 183 S 183

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  104 bits (262), Expect = 3e-27
 Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 15/174 (8%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH-INTRSEVAGYM 85
           +KVA++G+ G IG  +  L  L  L   + LYD+      G A D+ H  +         
Sbjct: 10  KKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67

Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 68  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
           + +++NP++       +V  +A       + G+   LD  R + + A   +V+ 
Sbjct: 128 IIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSP 177

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  103 bits (260), Expect = 7e-27
 Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 21/179 (11%)

Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INT 77
           E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + T
Sbjct: 15  EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKT 73

Query: 78  RSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
              V+   Y           +S +VII AG  ++ G +R +L   N  I K +   + KY
Sbjct: 74  PKIVSSKDY-------SVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY 126

Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
            P   + ++SNPV+    I   V  K   + + ++ G    LD  R +     +  V+ 
Sbjct: 127 SPQCKLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHP 181

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  102 bits (256), Expect = 2e-26
 Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 22/177 (12%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
            K+ ++G+ G IG  +A L+    L   + L+DI      G A D  H      +  +V+
Sbjct: 5   AKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVS 62

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCP 137
           G   N      L  +DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K CP
Sbjct: 63  G--SNTY--DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP 118

Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
           NA + +++NPV+    +  ++  +     + K+ G+   LD  R K + + K NV  
Sbjct: 119 NAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCP 171

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  101 bits (255), Expect = 2e-26
 Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 17/177 (9%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTPGVAADVGHINTRSE 80
           + E+    K+ V+G  G +G    L +    +  RL L D++  T G   D+   N  + 
Sbjct: 8   NHENKTVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNV 66

Query: 81  VAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
                         A   S VVI           +  D+   N  + + L  A+  Y  +
Sbjct: 67  EISKDL-------SASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQH 118

Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVA 194
           +++ + S P    V I   V  K  T+   ++ G+   LD  R +           +
Sbjct: 119 SVLLVASQP----VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTS 171

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  101 bits (254), Expect = 4e-26
 Identities = 53/180 (29%), Positives = 76/180 (42%), Gaps = 24/180 (13%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVA-------ADVGHI 75
           +V V GAAG I   L        +  K  P++  L L DI    GV         D    
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMELQDCALP 62

Query: 76  NTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
             +  +A     D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY
Sbjct: 63  LLKDVIAT----DKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY 118

Query: 136 CPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
              ++ V ++ NP N+    A+   K A +  ++    +T LD  RAK   A K  V   
Sbjct: 119 AKKSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSD 175

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  101 bits (254), Expect = 4e-26
 Identities = 54/182 (29%), Positives = 70/182 (38%), Gaps = 26/182 (14%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTP------GVA---ADVG 73
           +VAV GAAG I   L        +L K  P++  L L +I N        GV     D  
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEIDDCA 64

Query: 74  HINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
                   A          A +D+DV ++    PR PGM R DL   NA I      AI 
Sbjct: 65  FPLLAGMTAH----ADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120

Query: 134 KYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
                N  V ++ NP N+   IA    K A +   K    +  LD  RA +  A K    
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKP 177

Query: 193 VA 194
           V+
Sbjct: 178 VS 179

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score = 99.3 bits (248), Expect = 3e-25
 Identities = 51/181 (28%), Positives = 71/181 (39%), Gaps = 26/181 (14%)

Query: 30  KVAVLGAAGGIGQPLAL------LMKLNPLVSRLALYDIANTPGVAA---------DVGH 74
           +VAV GAAG IG  L        ++  +  V  L L +I     + A         D   
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI-LQLLEI--PQAMKALEGVVMELEDCAF 62

Query: 75  INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                  A     D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+
Sbjct: 63  PLLAGLEAT----DDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAE 118

Query: 135 YCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
                + V ++ NP N+   IA    K A   N +    +T LD  RAK   A K    V
Sbjct: 119 VAKKDVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGV 175

Query: 194 A 194
            
Sbjct: 176 D 176

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score = 99.1 bits (247), Expect = 7e-25
 Identities = 50/184 (27%), Positives = 67/184 (36%), Gaps = 22/184 (11%)

Query: 30  KVAVLGAAGGIGQPLALL------MKLNPLVSRLALYDIANTP----GVA---ADVGHIN 76
            +AV GAAG I   L            +  ++ L L     +     GVA    D  +  
Sbjct: 34  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA-LKLLGSERSFQALEGVAMELEDSLYPL 92

Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
            R    G        +  ED D  ++    PR PGM R  L +IN  I  D   A+    
Sbjct: 93  LREVSIG----IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVA 148

Query: 137 P-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAG 195
             N  V ++ NP N+   I     K A     K    +T LD  RAK   A KA V    
Sbjct: 149 SKNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDK 205

Query: 196 LLKL 199
           +  +
Sbjct: 206 VSNV 209

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score = 96.8 bits (242), Expect = 2e-24
 Identities = 50/172 (29%), Positives = 74/172 (43%), Gaps = 22/172 (12%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-----INTRSEVA 82
           KV V+G  G +G   A  + L    S L L D         A D+ H       TR    
Sbjct: 2   KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG 60

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G+         L D+ VVI+ AG  +KPG +R DL   NA I ++L   I +  P+A++ 
Sbjct: 61  GH-------SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLL 113

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
           + SNPV+    +  ++  +        + G  T LD  R +   A  A V+ 
Sbjct: 114 VTSNPVD----LLTDLATQLAPGQ--PVIGSGTVLDSARFRHLMAQHAGVDG 159

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score = 93.3 bits (233), Expect = 4e-23
 Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 25/178 (14%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH------INTRSE 80
           RK+ ++G  G +G  +A  +    +       D           D          +    
Sbjct: 2   RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV 60

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           +  +        AL D+DVVI   G  +     P   R       + +V+ + + + +  
Sbjct: 61  INDW-------AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG 113

Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNV 193
            + ++ +ISNPV+    +   +F+    +   K+ G  T LD  R +       +++ 
Sbjct: 114 FHGVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDP 167

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 50.5 bits (120), Expect = 1e-07
 Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 30/152 (19%)

Query: 25  SVPDRKVAVLGAAGGIGQPLAL---LMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
           S+   K+A +G  G  G   +L   L     +   +ALYD+      A     I   S  
Sbjct: 2   SLDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLD--FEAAQKNEVIGNHSGN 58

Query: 82  AG--YMGNDQLGQALEDSDVVIIPAGV------------PRKPGMTRDDLFNINAG---- 123
               Y     L +AL  +D+VII                P + G+ +     +  G    
Sbjct: 59  GRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIR 118

Query: 124 ------IVKDLCSAIAKYCPNAIVNMISNPVN 149
                 I  ++  AI  Y P + V   +NP++
Sbjct: 119 GLRAVPIFAEIARAIRDYAPESWVINYTNPMS 150

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472

 Score = 49.4 bits (117), Expect = 2e-07
 Identities = 33/208 (15%), Positives = 58/208 (27%), Gaps = 34/208 (16%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDI-ANTPGVAADVGH--INTRSEVA 82
            + + G  G    P   L LL  L    + +L LYD         A      I  ++   
Sbjct: 30  SIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDI 88

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI------------------ 124
            +       +A  D D V+    V +      D+   +  G+                  
Sbjct: 89  EFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSI 148

Query: 125 --VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT------L 176
             V ++   + KY P+A +   SNP          +   +   N   +           L
Sbjct: 149 GGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNSKILNICDMPVGIEDRMAQIL 208

Query: 177 DVVRAKTFYAGKANVNVAGLLKLLTHKN 204
            +   K        +N  G    +  + 
Sbjct: 209 GLSSRKEMKVRYYGLNHFGWWTSIQDQE 236

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 48.6 bits (115), Expect = 4e-07
 Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 28/147 (19%)

Query: 30  KVAVLGAAGGI--GQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTR-SEVAG-- 83
           K+A +G            L+ + + L V  L L DI         VG +  R  E AG  
Sbjct: 9   KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVP 68

Query: 84  --YMGNDQLGQALEDSDVVIIPAGV------------PRKPGMTRDDLFNI--------N 121
                     +AL+ +D V     V            P K G+   +             
Sbjct: 69  IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRT 128

Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPV 148
             ++ D+   + + CP+A +   +NP 
Sbjct: 129 IPVILDIIRDMEELCPDAWLINFTNPA 155

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480

 Score = 46.0 bits (108), Expect = 3e-06
 Identities = 26/152 (17%), Positives = 41/152 (26%), Gaps = 34/152 (22%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDIA--NTPGVAADVGHINTRSEVAG 83
           K+ ++GA G        ++ L K   L  S + L DI       +               
Sbjct: 5   KIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADL 63

Query: 84  -YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI------------------ 124
            +     L   + D+D VI  A V     + +        G                   
Sbjct: 64  KFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTF 123

Query: 125 --------VKDLCSAIAKYCPNAIVNMISNPV 148
                     D+   I K  P A     +NP+
Sbjct: 124 SNYNQLKYFVDIARKIEKLSPKAWYLQAANPI 155

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	99.98
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	99.97
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	99.97
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	99.97
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	99.96
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	99.96
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	99.95
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	99.94
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	99.94
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	99.94
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	99.93
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	99.92
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.91
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	99.88
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.87
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	99.2
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	99.19
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	99.15
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	99.15
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	99.14
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	99.14
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.13
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	99.12
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	99.12
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.12
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	99.12
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.11
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	99.1
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	99.09
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	99.09
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	99.07
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	99.07
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	99.06
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.06
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	99.05
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	99.04
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	99.04
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.04
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	99.04
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	99.04
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	99.03
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.03
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	99.01
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	99.0
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	99.0
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	99.0
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	99.0
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	99.0
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	98.99
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	98.97
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	98.97
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	98.96
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	98.96
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	98.95
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	98.95
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	98.95
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	98.94
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	98.94
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	98.93
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	98.93
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	98.93
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	98.92
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	98.92
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	98.91
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	98.91
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	98.9
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	98.89
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	98.89
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	98.89
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	98.89
1xq6_A	253	Unknown protein; structural genomics, protein stru	98.89
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	98.88
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	98.87
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	98.87
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	98.86
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.86
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	98.85
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	98.85
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	98.83
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	98.83
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	98.83
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	98.82
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	98.81
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.81
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	98.8
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	98.8
4f6c_A	427	AUSA reductase domain protein; thioester reductase	98.8
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	98.8
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	98.79
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.78
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	98.78
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	98.77
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	98.77
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	98.77
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	98.76
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.76
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	98.76
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	98.76
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	98.75
4f6l_B	508	AUSA reductase domain protein; thioester reductase	98.74
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	98.73
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	98.72
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.71
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.71
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	98.69
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	98.68
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	98.68
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	98.67
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	98.67
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	98.67
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	98.67
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.66
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.66
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	98.66
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.65
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	98.65
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	98.64
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.63
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.63
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	98.63
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.63
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	98.63
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	98.6
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	98.6
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.59
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	98.58
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	98.58
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	98.58
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	98.57
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	98.57
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.56
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.56
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	98.56
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	98.55
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	98.55
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	98.54
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	98.54
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	98.54
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	98.54
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	98.52
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	98.52
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.52
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.52
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	98.52
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	98.52
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	98.52
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	98.52
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	98.51
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	98.5
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	98.5
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	98.5
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	98.49
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	98.49
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	98.49
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.48
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.48
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.48
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	98.48
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	98.46
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	98.46
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	98.45
3imf_A	257	Short chain dehydrogenase; structural genomics, in	98.45
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	98.45
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.45
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.45
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	98.45
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	98.45
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	98.45
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	98.44
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	98.44
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	98.44
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.44
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.44
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	98.44
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	98.44
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	98.44
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	98.44
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	98.44
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	98.43
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	98.43
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	98.43
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	98.42
1xq1_A	266	Putative tropinone reducatse; structural genomics,	98.42
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	98.42
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	98.42
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	98.42
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	98.42
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	98.42
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.42
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	98.42
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	98.42
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	98.41
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	98.41
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	98.41
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	98.41
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	98.4
1spx_A	278	Short-chain reductase family member (5L265); paral	98.4
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	98.4
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	98.4
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	98.4
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	98.4
3cxt_A	291	Dehydrogenase with different specificities; rossma	98.4
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	98.39
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	98.39
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.39
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	98.39
4dqx_A	277	Probable oxidoreductase protein; structural genomi	98.38
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	98.38
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	98.38
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	98.38
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	98.38
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.38
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	98.38
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.38
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.38
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	98.37
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	98.37
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	98.37
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	98.37
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	98.37
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	98.37
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	98.36
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	98.36
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	98.36
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	98.36
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	98.36
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	98.36
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	98.36
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	98.36
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.36
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	98.36
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	98.35
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	98.35
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	98.35
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.34
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	98.34
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	98.34
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	98.34
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	98.34
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.34
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	98.33
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	98.33
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	98.33
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	98.33
3rih_A	293	Short chain dehydrogenase or reductase; structural	98.33
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	98.33
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	98.33
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	98.33
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.33
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	98.32
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.32
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.32
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	98.32
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	98.31
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	98.31
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.31
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	98.31
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	98.31
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	98.31
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	98.31
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	98.31
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	98.31
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.31
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	98.31
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	98.3
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	98.3
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	98.3
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	98.3
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	98.3
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	98.3
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	98.3
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	98.3
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	98.3
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	98.3
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	98.29
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.29
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	98.29
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.29
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	98.29
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	98.28
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	98.28
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	98.28
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.28
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	98.28
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.28
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	98.27
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	98.27
1xkq_A	280	Short-chain reductase family member (5D234); parra	98.27
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	98.27
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.27
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.27
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	98.27
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.27
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	98.26
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	98.26
1xhl_A	297	Short-chain dehydrogenase/reductase family member	98.26
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	98.26
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	98.25
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.25
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	98.25
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	98.25
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	98.24
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	98.24
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	98.24
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	98.24
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	98.24
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	98.24
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	98.24
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	98.23
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	98.23
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	98.23
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.22
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	98.22
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	98.22
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	98.22
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.21
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	98.21
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.21
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	98.21
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	98.21
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	98.21
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.2
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	98.2
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	98.19
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	98.19
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	98.19
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.19
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.18
4e4y_A	244	Short chain dehydrogenase family protein; structur	98.18
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	98.18
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.18
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	98.18
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	98.17
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.17
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.17
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	98.17
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.15
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	98.13
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	98.13
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	98.13
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.12
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	98.12
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	98.12
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.12
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	98.12
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.11
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	98.11
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.11
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	98.09
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.09
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.09
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.08
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.08
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	98.07
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	98.07
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.07
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	98.06
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	98.05
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	98.05
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.05
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	98.05
4ezb_A	317	Uncharacterized conserved protein; structural geno	98.04
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	98.03
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	98.02
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.02
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	98.02
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	98.02
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	98.01
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	98.0
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.0
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.98
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.98
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	97.96
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.96
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	97.95
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.95
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.95
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.94
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.94
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.94
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.94
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.92
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.92
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.92
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.91
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	97.9
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.89
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	97.88
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	97.87
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.86
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.86
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.85
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.85
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.84
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	97.83
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.81
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.81
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.81
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	97.8
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	97.8
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.8
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	97.78
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.77
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.74
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.74
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.71
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.7
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.69
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	97.68
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.63
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.6
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.58
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	97.57
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	97.55
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.55
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.52
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	97.51
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	97.51
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.49
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.49
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.46
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	97.45
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.45
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.43
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	97.42
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.41
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.41
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	97.4
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.38
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	97.38
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.36
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.36
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.36
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	97.36
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.34
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.32
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	97.32
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.31
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.31
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.3
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.29
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.27
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.27
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	97.26
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.26
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	97.26
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.24
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.23
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	97.22
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.2
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	97.19
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.19
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	97.19
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	97.18
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	97.17
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	97.16
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.16
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	97.14
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	96.21
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.13
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.12
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.11
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.11
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	97.1
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.1
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.1
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	97.09
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.08
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	97.06
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.05

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=1.1e-36  Score=260.92  Aligned_cols=176  Identities=63%  Similarity=0.970  Sum_probs=158.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      |||+|+||+|++|++++..|++.++..+|+++|+++.++.+.||.+...+.++.....++|+++++++||+||+++|.++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            69999999899999999999999877799999998766778899987655455543233578889999999999999999


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEehhhHHHHHHHHHHH
Q 028437          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGK  188 (209)
Q Consensus       109 ~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~~lds~r~~~~la~~  188 (209)
                      ++|++|.|++..|+++++++++++++++|+++++++|||++.+++++++++++.++||++|++|+|+||+.|+++++|++
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld~~r~~~~la~~  160 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL  160 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEeecccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888777788999999999999999999999999999999


Q ss_pred             cCCCCCCeeEEEEeccc
Q 028437          189 ANVNVAGLLKLLTHKNL  205 (209)
Q Consensus       189 l~v~~~~v~~~~i~g~~  205 (209)
                      +|++|++|+ ..+|||+
T Consensus       161 l~v~~~~v~-~~v~G~H  176 (314)
T 1mld_A          161 KGLDPARVS-VPVIGGH  176 (314)
T ss_dssp             TTCCGGGCB-CCEEECS
T ss_pred             hCcChHhEE-EEEccCC
Confidence            999999999 5556666

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=1.9e-36  Score=261.95  Aligned_cols=181  Identities=31%  Similarity=0.368  Sum_probs=150.5

Q ss_pred             ccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEecCC----chhHHHhhcCCCCCcceeEeecCCchh
Q 028437           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLG   91 (209)
Q Consensus        21 ~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~-----ev~l~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~   91 (209)
                      +.+....+.||+|+||+|.||++|++.|++..+++     +++|+|+++    .++.++||+|..++....... +++.+
T Consensus        17 ~~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~-~~~~~   95 (345)
T 4h7p_A           17 QGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVV-TADPR   95 (345)
T ss_dssp             -----CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEE-ESCHH
T ss_pred             cCCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEE-cCChH
Confidence            33444445699999999999999999999987765     999999975    256789999987664443333 34678


Q ss_pred             hhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCCcHHHHHHHHHH-hCCCCCCc
Q 028437           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKK-AGTYNEKK  169 (209)
Q Consensus        92 ~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~~~~i~~~~~~~-~~~~p~~~  169 (209)
                      ++++|||+||++||.|++||++|.|++..|.++++++++++.+++ |+++++++|||+|    .+++++++ .+++|+.|
T Consensus        96 ~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd----~~~~i~~~~~~g~~~~r  171 (345)
T 4h7p_A           96 VAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPAN----TNALILLKSAQGKLNPR  171 (345)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHHTTTCSCGG
T ss_pred             HHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcc----hHHHHHHHHccCCCCcc
Confidence            999999999999999999999999999999999999999999997 7899999999999    55555444 66766665


Q ss_pred             EE-EEehhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          170 LF-GVTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       170 vi-g~~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      +| +.|.||++|++++||+++|++|++|++++||||++
T Consensus       172 ~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG  209 (345)
T 4h7p_A          172 HVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHS  209 (345)
T ss_dssp             GEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSS
T ss_pred             eeeeccchhHHHHHHHHHHHHCcChhheecceeecCCC
Confidence            54 55899999999999999999999999999999976

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=2.2e-36  Score=258.71  Aligned_cols=174  Identities=54%  Similarity=0.804  Sum_probs=149.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEecCC-chhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~-g~~~ev~l~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      |||+|+||+|.||++++..|.++ ++..+|+|+|+++ ..+.++||.|......+..+.+ ++.+++++|||+||+++|.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~-~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECS-SCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecC-CCcHHHhCCCCEEEEeCCC
Confidence            69999997799999999999886 7778999999986 5678899999865444544322 2447899999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCC-CCCcEEEEehhhHHHHHHHH
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY-NEKKLFGVTTLDVVRAKTFY  185 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~-p~~~vig~~~lds~r~~~~l  185 (209)
                      |++||++|.|++..|.++++++++++.+++|+++++++|||+|.+++++++ .++.+++ |++|++|+|.||++|+++++
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~-~~k~sg~~p~~rv~G~~~LD~~R~~~~l  158 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAE-VLKKAGVYDKNKLFGVTTLDIIRSNTFV  158 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHH-HHHHTTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHH-HHHHcCCCCcceEEEEechhHHHHHHHH
Confidence            999999999999999999999999999999999999999999955444333 4555566 99999999999999999999


Q ss_pred             HHHcCCCCCCeeEEEEeccc
Q 028437          186 AGKANVNVAGLLKLLTHKNL  205 (209)
Q Consensus       186 a~~l~v~~~~v~~~~i~g~~  205 (209)
                      |+++|+++++|+++ ||||+
T Consensus       159 a~~lgv~~~~v~~~-V~G~H  177 (312)
T 3hhp_A          159 AELKGKQPGEVEVP-VIGGH  177 (312)
T ss_dssp             HHHHTCCGGGCCCC-EEECS
T ss_pred             HHHhCcChhHccee-EEecc
Confidence            99999999999965 56655

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=9.4e-37  Score=262.76  Aligned_cols=177  Identities=25%  Similarity=0.386  Sum_probs=153.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      .+.+||+|+|| |.+|+++++.|+..|+.++|+|+|+++  .++.++||.|............+.|+ +++++||+||++
T Consensus        17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~aDiVvi~   94 (331)
T 4aj2_A           17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANSKLVIIT   94 (331)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTEEEEEEC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCCCEEEEc
Confidence            35579999999 999999999999999888999999975  46788899987421111111224565 579999999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHHH
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~~  182 (209)
                      +|.+++||++|.|++.+|++++++++++++++||+++++++|||++    ++++++++.+++|++|+||+ |.||++|++
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd----i~t~~~~k~sg~p~~rviG~gt~LD~~R~~  170 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFR  170 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH----HHHHHHHHHhCCCHHHEEeeccccHHHHHH
Confidence            9999999999999999999999999999999999999999999999    78888999889999999999 899999999


Q ss_pred             HHHHHHcCCCCCCeeEEEE--ecccccc
Q 028437          183 TFYAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       183 ~~la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      +++|+++|+++++|+++|+  ||+++|+
T Consensus       171 ~~la~~lgv~~~~V~~~ViGeHG~s~vp  198 (331)
T 4aj2_A          171 YLMGERLGVHPLSCHGWVLGEHGDSSVP  198 (331)
T ss_dssp             HHHHHHHTSCGGGCBCCEEBCSSTTCEE
T ss_pred             HHHHHHhCCCHHHCEEeEEecCCCceeE
Confidence            9999999999999999864  4444554

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=2.5e-36  Score=260.00  Aligned_cols=179  Identities=64%  Similarity=0.998  Sum_probs=156.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      +++|||+|+||+|++|++++..|++.|++.+|+++|+++..+.+.|+.+...+..+..+.+++|++++++|||+||+++|
T Consensus         6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag   85 (326)
T 1smk_A            6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG   85 (326)
T ss_dssp             --CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence            35589999997799999999999998866699999987655677788876544344443334578899999999999999


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEehhhHHHHHHHH
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY  185 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~~lds~r~~~~l  185 (209)
                      .++++|++|.+++..|+++++++++++.+++|+++++++|||++.+++++++.+++.++||++|++|+|.||+.|+++++
T Consensus        86 ~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~~p~~rviG~~~Ld~~r~~~~l  165 (326)
T 1smk_A           86 VPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFV  165 (326)
T ss_dssp             CCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccCCCcccEEEEeehHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988889999999999999999999999999999999


Q ss_pred             HHHcCCCCCCeeEEEEeccc
Q 028437          186 AGKANVNVAGLLKLLTHKNL  205 (209)
Q Consensus       186 a~~l~v~~~~v~~~~i~g~~  205 (209)
                      |+++|++|++|+. .+|||+
T Consensus       166 a~~l~v~~~~v~~-~v~G~H  184 (326)
T 1smk_A          166 AEVLGLDPRDVDV-PVVGGH  184 (326)
T ss_dssp             HHHHTCCGGGCBC-CEEECS
T ss_pred             HHHhCcChhheEE-EEeccc
Confidence            9999999999994 556565

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=6.4e-36  Score=260.53  Aligned_cols=179  Identities=28%  Similarity=0.260  Sum_probs=151.3

Q ss_pred             ccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccE---EEEEecC--C----chhHHHhhcCCCCCc--ceeEeecCCc
Q 028437           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSR---LALYDIA--N----TPGVAADVGHINTRS--EVAGYMGNDQ   89 (209)
Q Consensus        21 ~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~e---v~l~D~~--~----~~~~~~dl~~~~~~~--~v~~~~~~~d   89 (209)
                      ..+.|++++||+|+||+|.||+++++.|+..+++++   |.|+|.+  .    +++.++||.|..++.  .+..   .++
T Consensus        25 ~~~~~~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i---~~~  101 (375)
T 7mdh_A           25 KTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI---GID  101 (375)
T ss_dssp             ----CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE---ESC
T ss_pred             hHhhCCCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEE---ecC
Confidence            356688889999999779999999999999998876   7776654  2    467899999987532  2332   234


Q ss_pred             hhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 028437           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (209)
Q Consensus        90 ~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~-~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~  168 (209)
                      .+++++|||+||+++|.|++||++|.|++..|.++++++++++.++ +|+++++++|||+|    ++++++++.+++++.
T Consensus       102 ~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD----~~t~ia~k~sg~~~~  177 (375)
T 7mdh_A          102 PYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN----TNALICLKNAPDIPA  177 (375)
T ss_dssp             HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCG
T ss_pred             CHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh----HHHHHHHHHcCCCCc
Confidence            5799999999999999999999999999999999999999999998 79999999999999    777788886666666


Q ss_pred             cEEEE-ehhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          169 KLFGV-TTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       169 ~vig~-~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      |+||. |.||++|++++||+++|++|++|++++||||++
T Consensus       178 rvig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHg  216 (375)
T 7mdh_A          178 KNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHS  216 (375)
T ss_dssp             GGEEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSS
T ss_pred             cEEEeeehHHHHHHHHHHHHHhCcChhhcccceEEecCC
Confidence            77777 789999999999999999999999988877764

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=2.2e-36  Score=260.85  Aligned_cols=174  Identities=28%  Similarity=0.367  Sum_probs=150.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccE-----EEEEecCC----chhHHHhhcCCCCCcceeEeecCCchhhhcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-----LALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~e-----v~l~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   97 (209)
                      +++||+|+||+|+||+++++.|+..+++++     |+|+|+++    .++.++||.|...+. +..+..+++.+++++||
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~-~~~~~~~~~~~~~~~da   80 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKDL   80 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTTC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcc-cCCEEEcCCcHHHhCCC
Confidence            568999999889999999999999998887     99999964    467889999975432 23333334567999999


Q ss_pred             CEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCe-EEEEecCCCCCcHHHHHHHHHHhCC-CCCCcEEE-Ee
Q 028437           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA-IVNMISNPVNSTVPIAAEVFKKAGT-YNEKKLFG-VT  174 (209)
Q Consensus        98 D~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~-~viv~snP~~~~~~i~~~~~~~~~~-~p~~~vig-~~  174 (209)
                      |+||++||.|+++|++|.|++..|+++++++++++++++|++ +++++|||+|    ++++++++.++ +|+++ || .|
T Consensus        81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd----~~t~~~~~~~~~~p~~~-ig~~t  155 (333)
T 5mdh_A           81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPAN----TNCLTASKSAPSIPKEN-FSCLT  155 (333)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGG-EEECC
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchH----HHHHHHHHHcCCCCcCE-EEEEE
Confidence            999999999999999999999999999999999999999986 7999999999    77888888764 55554 65 48


Q ss_pred             hhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          175 TLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       175 ~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      .||++|+++++|+++|++|++|++++||||++
T Consensus       156 ~LDs~R~~~~la~~l~v~~~~v~~~vV~GeHg  187 (333)
T 5mdh_A          156 RLDHNRAKAQIALKLGVTSDDVKNVIIWGNHS  187 (333)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS
T ss_pred             hHHHHHHHHHHHHHhCcCHHHeeecEEEEcCC
Confidence            99999999999999999999999999887764

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=6e-36  Score=257.42  Aligned_cols=176  Identities=24%  Similarity=0.296  Sum_probs=153.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCC--cceeEeecCCchhhhcCCCCEE
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVV  100 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aD~V  100 (209)
                      +++++||+|+|+ |.+|++++..|++.|++++|+++|+++  .++.++||.+....  ..+...  +.+ ++++++||+|
T Consensus         2 ~~~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~--~~~-~~a~~~aDvV   77 (326)
T 3pqe_A            2 NKHVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTS--YGT-YEDCKDADIV   77 (326)
T ss_dssp             CCSCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEE--EEC-GGGGTTCSEE
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEE--eCc-HHHhCCCCEE
Confidence            456789999998 999999999999999888999999975  46678888886211  223332  234 5789999999


Q ss_pred             EEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHH
Q 028437          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVV  179 (209)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~  179 (209)
                      |+++|.|+++|++|.|++..|+++++++++++.+++|+++++++|||++    ++++++++.++||++|++|+ |.||++
T Consensus        78 vi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd----~~t~~~~k~~g~p~~rviG~gt~LD~~  153 (326)
T 3pqe_A           78 CICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSA  153 (326)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHH
T ss_pred             EEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHH----HHHHHHHHhcCCCHHHEEeeccccHHH
Confidence            9999999999999999999999999999999999999999999999999    78888988889999999999 999999


Q ss_pred             HHHHHHHHHcCCCCCCeeEEEE--ecccccc
Q 028437          180 RAKTFYAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       180 r~~~~la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      |+++++|+++|+++++|+++|+  ||+++|+
T Consensus       154 R~~~~la~~lgv~~~~V~~~V~GeHG~t~vp  184 (326)
T 3pqe_A          154 RFRFMLSEYFGAAPQNVCAHIIGEHGDTELP  184 (326)
T ss_dssp             HHHHHHHHHHTCCGGGEECCEEBSSSTTCEE
T ss_pred             HHHHHHHHHhCCCHHHceeeeeecCCCceee
Confidence            9999999999999999999744  4445554

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=5.2e-36  Score=254.23  Aligned_cols=169  Identities=31%  Similarity=0.512  Sum_probs=147.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCC----CcceeEeecCCchhhhcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      |||+|+|| |.||+++++.|+.+++++|++|+|+++  .+++++||.|...    ...+..   ++| +++++|||+||+
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~---~~d-~~~~~~aDvVvi   75 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEec---CCC-HHHhCCCCEEEE
Confidence            79999998 999999999999999999999999986  5788999999642    222322   345 478999999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHH
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~  181 (209)
                      +||.|++||++|.|++..|.++++++++++.+++|+++++++|||+|    ++++++++.+++|++|+||. |.||++|+
T Consensus        76 tAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd----~~t~i~~k~sg~p~~rvig~gT~LDs~R~  151 (294)
T 2x0j_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHH----HHHHHHHHHSSCCTTSEEECCHHHHHHHH
T ss_pred             ecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcch----hhHHhhHHHcCCChhhEEEeeeEEeHHHH
Confidence            99999999999999999999999999999999999999999999999    77788899999999999999 78999999


Q ss_pred             HHHHHHHcCCCCCCeeEEEE--ecccccc
Q 028437          182 KTFYAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       182 ~~~la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      ++++++++++++.  +++|+  ||+++|+
T Consensus       152 ~~~l~~~~~~~~~--~~~V~G~HGdt~vp  178 (294)
T 2x0j_A          152 KERLYNAGARNIR--RAWIIGEHGDSMFV  178 (294)
T ss_dssp             HHHHHHTTCEEEC--CCCEEBCSSTTCEE
T ss_pred             HHHHhhcccCCcc--eeEEEecCCCcEEE
Confidence            9999999887654  45544  5555554

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=1.5e-36  Score=261.01  Aligned_cols=174  Identities=30%  Similarity=0.417  Sum_probs=137.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCC-cceeEeecCCchhhhcCCCCEEEEc
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      .++||+|+|| |.+|++++..|+..+++++|+++|+++  .++.++||.|.... ..+...  +.+ ++++++||+||++
T Consensus         8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~--~~~-~~a~~~aDiVvi~   83 (326)
T 3vku_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIY--SAE-YSDAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEE--ECC-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEE--ECc-HHHhcCCCEEEEC
Confidence            4479999998 999999999999999989999999975  46778899987521 122322  233 6889999999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHHH
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~~  182 (209)
                      +|.+++||++|.|++..|+++++++++++.+++|+++++++|||++    ++++++++.++||++|++|+ |.||++|++
T Consensus        84 ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvd----i~t~~~~k~~g~p~~rviG~gt~LD~~R~~  159 (326)
T 3vku_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchH----HHHHHHHHhcCCCHHHeeeecccCcHHHHH
Confidence            9999999999999999999999999999999999999999999999    88889999999999999999 999999999


Q ss_pred             HHHHHHcCCCCCCeeEEEE--ecccccc
Q 028437          183 TFYAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       183 ~~la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      +++|+++|+++++|+++|+  ||+++|+
T Consensus       160 ~~la~~lgv~~~~V~~~ViGeHGdt~vp  187 (326)
T 3vku_A          160 QSIAKMVNVDARSVHAYIMGEHGDTEFP  187 (326)
T ss_dssp             HHHHHHHTSCGGGEECCEEBSSSTTCEE
T ss_pred             HHHHHHhCCCHHHCeEEEEcCCCCeeEE
Confidence            9999999999999999754  4455554

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=6.9e-36  Score=253.79  Aligned_cols=169  Identities=31%  Similarity=0.500  Sum_probs=149.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCC--C--CcceeEeecCCchhhhcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN--T--RSEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~--~--~~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      |||+|+|| |.+|++++..|++.+++++|+++|+++  .++...|+.|..  +  +..+..   ++| ++++++||+||+
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d-~~a~~~aDiVVi   75 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE---eCC-HHHhCCCCEEEE
Confidence            69999999 999999999999999888999999986  345567777654  2  223332   346 789999999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHH
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~  181 (209)
                      ++|.++++|++|.|++..|.++++++++++.+++|+++++++|||+|    ++++++++.++||++|++|+ |.||++|+
T Consensus        76 aag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd----~~t~~~~k~~g~p~~rviG~gt~LD~~R~  151 (294)
T 1oju_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHH----HHHHHHHHHSCCCTTSEEECSHHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcch----HHHHHHHHhcCCCHHHEeecccccHHHHH
Confidence            99999999999999999999999999999999999999999999999    78889999999999999999 78999999


Q ss_pred             HHHHHHHcCCCCCCeeEEEE--ecccccc
Q 028437          182 KTFYAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       182 ~~~la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      ++++| ++|++|++ +++|+  ||+++|+
T Consensus       152 ~~~la-~l~v~~~~-~~~V~G~Hg~t~vp  178 (294)
T 1oju_A          152 KERLY-NAGARNIR-RAWIIGEHGDSMFV  178 (294)
T ss_dssp             HHHHH-HTTCBSCC-CCCEEBCSSTTCEE
T ss_pred             HHHHH-HhCCCccC-ceEEEecCCCceee
Confidence            99999 99999999 77776  6666665

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=3.6e-36  Score=260.29  Aligned_cols=172  Identities=28%  Similarity=0.408  Sum_probs=144.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCC-cceeEeecCCchhhhcCCCCEEEEc
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      +++||+|+||+|+||++++..++..|+..+|+|+|+++  .++.++||.|..++ .++..   ++|++++++|||+||++
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~---t~d~~~al~dADvVvit   83 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF---TSDIKEALTDAKYIVSS   83 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE---ESCHHHHHTTEEEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE---cCCHHHHhCCCCEEEEc
Confidence            34699999988999999999999999877999999975  46678889887543 23332   35778899999999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeE-EEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEehhhHHHHH
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK  182 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~-viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~~lds~r~~  182 (209)
                      +|.|+++|++|.|++..|+++++++++++.+++|+++ ++++|||+|    ++++++++.++||++|++|.|.||++|++
T Consensus        84 aG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd----~~t~i~~k~sg~p~~rv~g~t~LDs~R~~  159 (343)
T 3fi9_A           84 GGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPAD----ITGLVTLIYSGLKPSQVTTLAGLDSTRLQ  159 (343)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHH----HHHHHHHHHHTCCGGGEEEECCHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchH----HHHHHHHHHcCCCcceEEEecCcHHHHHH
Confidence            9999999999999999999999999999999999996 899999999    67777888778999999999999999999


Q ss_pred             HHHHHHcCCCCCCeeEEEEeccc
Q 028437          183 TFYAGKANVNVAGLLKLLTHKNL  205 (209)
Q Consensus       183 ~~la~~l~v~~~~v~~~~i~g~~  205 (209)
                      +++|+++|++|++|++.+||||+
T Consensus       160 ~~la~~l~v~~~~v~~~~ViGeH  182 (343)
T 3fi9_A          160 SELAKHFGIKQSLVTNTRTYGGH  182 (343)
T ss_dssp             HHHHHHHTSCGGGEECCCEEESS
T ss_pred             HHHHHHhCcCHHHcccceEEEcC
Confidence            99999999999999954455554

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=4e-36  Score=258.33  Aligned_cols=176  Identities=20%  Similarity=0.255  Sum_probs=151.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +.+||+|+|+ |.+|++++..|+..|++++|+++|+++  .++.++||.|.........+..++|+ +++++||+||+++
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~-~~~~daDiVIita   97 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDY-SVSAGSKLVVITA   97 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSS-CSCSSCSEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCH-HHhCCCCEEEEeC
Confidence            4579999999 999999999999999988999999975  46677888876321111111223565 4599999999999


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHHHH
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~~~  183 (209)
                      |.|++||++|.|++.+|+++++++++++.+++|+++++++|||+|    ++++++++.++||++|+||+ |.||++|+++
T Consensus        98 G~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvd----i~t~~~~k~sg~p~~rViG~gt~LDs~R~~~  173 (330)
T 3ldh_A           98 GARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRY  173 (330)
T ss_dssp             SCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEECCTTHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccH----HHHHHHHHHhCCCHHHeecccCchhHHHHHH
Confidence            999999999999999999999999999999999999999999999    77888888889999999999 5799999999


Q ss_pred             HHHHHcCCCCCCeeEEEE--ecccccc
Q 028437          184 FYAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       184 ~la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      ++|+++|++|++|+++++  ||+++|+
T Consensus       174 ~lA~~lgv~~~~V~~~V~G~Hg~t~vp  200 (330)
T 3ldh_A          174 LMGERLGVHSCLVIGWVIGQHGDSVPS  200 (330)
T ss_dssp             HHHHHHTSCTTTCCEEECSSSSTTCCE
T ss_pred             HHHHHhCCCHHHeEEEEEcCCCCceee
Confidence            999999999999999854  4455554

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=3.1e-36  Score=258.02  Aligned_cols=171  Identities=30%  Similarity=0.519  Sum_probs=143.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCC----CcceeEeecCCchhhhcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      |||+|+|| |.+|++++..|++.+++++|+++|+++  .++.++||.|...    ...+..   +++ ++++++||+||+
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~---~~~-~~a~~~aDvVii   75 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG---TND-YGPTEDSDVCII   75 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEE---ESS-SGGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEE---CCC-HHHhCCCCEEEE
Confidence            69999998 999999999999999888999999986  4667888988642    222322   223 689999999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-hhhHHHH
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRA  181 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~-~lds~r~  181 (209)
                      ++|.+++||++|.|++..|+++++++++++.+++|+++++++|||++    ++++++++.++||++|++|+| .||++|+
T Consensus        76 ~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd----~~t~~~~k~~g~p~~rviG~~t~LD~~R~  151 (314)
T 3nep_X           76 TAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRF  151 (314)
T ss_dssp             CCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHH----HHHHHHHHHHTCCGGGEEECCHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchh----HHHHHHHHhcCCChHHEEeecCchHHHHH
Confidence            99999999999999999999999999999999999999999999999    677778888899999999997 8999999


Q ss_pred             HHHHHHHcCCCCCCeeEEEE--ecccccc
Q 028437          182 KTFYAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       182 ~~~la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      ++++|+++|++|++|+++++  ||+++|+
T Consensus       152 ~~~la~~lgv~~~~v~~~ViG~Hg~t~vp  180 (314)
T 3nep_X          152 RSFIAEELDVSVRDVQALLMGGHGDTMVP  180 (314)
T ss_dssp             HHHHHHHHTCCGGGEEEEEEESSGGGEEE
T ss_pred             HHHHHHHhCcCHHHeEEEEECCCCCcEEe
Confidence            99999999999999999976  4555554

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=3e-35  Score=252.01  Aligned_cols=173  Identities=34%  Similarity=0.530  Sum_probs=151.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC--C--chhHHHhhcCCC----CCcceeEeecCCchhhhcCCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--N--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDS   97 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~--~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~a   97 (209)
                      .+++||+|+|+ |.+|++++..|+..|+ ++|+++|++  +  .++.++|+.+..    ...++..   +++ ++++++|
T Consensus         6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~---t~d-~~a~~~a   79 (315)
T 3tl2_A            6 IKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG---TSD-YADTADS   79 (315)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE---ESC-GGGGTTC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE---cCC-HHHhCCC
Confidence            34579999998 9999999999999998 899999998  3  355667777653    1223433   345 5889999


Q ss_pred             CEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehh
Q 028437           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTL  176 (209)
Q Consensus        98 D~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~l  176 (209)
                      |+||+++|.|++||++|.|++..|+++++++++++.+++|+++++++|||++    ++++++++.+++|++|++|+ |.|
T Consensus        80 DvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd----~~t~~~~k~sg~p~~rviG~gt~L  155 (315)
T 3tl2_A           80 DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVD----AMTYSVFKEAGFPKERVIGQSGVL  155 (315)
T ss_dssp             SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCHHH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHH----HHHHHHHHhcCCChHHEEeeccCc
Confidence            9999999999999999999999999999999999999999999999999999    77778888889999999999 899


Q ss_pred             hHHHHHHHHHHHcCCCCCCeeEEEE--ecccccc
Q 028437          177 DVVRAKTFYAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       177 ds~r~~~~la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      |++|+++++|+++|+++++|+++++  ||+++|+
T Consensus       156 D~~R~~~~la~~lgv~~~~v~~~viG~Hg~t~vp  189 (315)
T 3tl2_A          156 DTARFRTFIAQELNLSVKDITGFVLGGHGDDMVP  189 (315)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEECCEEBCSGGGCEE
T ss_pred             HHHHHHHHHHHHhCcCHHHceeeEecCCCCccee
Confidence            9999999999999999999999986  5555665

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=1.9e-35  Score=253.72  Aligned_cols=172  Identities=24%  Similarity=0.360  Sum_probs=140.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCC-CcceeEeecCCchhhhcCCCCEEE
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aD~Vi  101 (209)
                      |++.+||+|+|| |++|++++..|+..++++||+|+|+++  .++.+.|+.|... ...++...   +.+++++|||+||
T Consensus         2 ~~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~---~~~~a~~~aDvVi   77 (318)
T 1ez4_A            2 MPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS---GEYSDCKDADLVV   77 (318)
T ss_dssp             BTTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE---CCGGGGTTCSEEE
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE---CCHHHhCCCCEEE
Confidence            556689999999 999999999999999889999999975  4556788888641 11222221   2368899999999


Q ss_pred             EcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHH
Q 028437          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (209)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r  180 (209)
                      +++|.++++|++|.|++.+|+++++++++.+++++|+++++++|||++    ++++++++.+++|++|+||+ |.||+.|
T Consensus        78 i~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~----~~t~~~~k~s~~p~~rviG~gt~LD~~R  153 (318)
T 1ez4_A           78 ITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSR  153 (318)
T ss_dssp             ECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHH
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHH----HHHHHHHHHcCCCHHHEEeccccchHHH
Confidence            999999999999999999999999999999999999999999999999    78889999889999999999 9999999


Q ss_pred             HHHHHHHHcCCCCCCeeEEEEeccc
Q 028437          181 AKTFYAGKANVNVAGLLKLLTHKNL  205 (209)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~~i~g~~  205 (209)
                      +++++|+++|+++++|+.+ +|||+
T Consensus       154 ~~~~la~~lgv~~~~v~~~-v~G~H  177 (318)
T 1ez4_A          154 LRVALGKQFNVDPRSVDAY-IMGEH  177 (318)
T ss_dssp             HHHHHHHHHTCCGGGEECC-EESSS
T ss_pred             HHHHHHHHhCcChhHEEEE-Eeccc
Confidence            9999999999999999955 55555

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=1.6e-34  Score=248.11  Aligned_cols=171  Identities=37%  Similarity=0.610  Sum_probs=151.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCC----CcceeEeecCCchhhhcCCCCEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aD~Vi  101 (209)
                      ++||+|+|+ |.+|++++..|+..++. +|+++|+++.  ++.+.|+.+...    ...+..   +++ ++++++||+||
T Consensus         5 ~~kI~iiGa-G~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~---t~d-~~a~~~aDvVI   78 (321)
T 3p7m_A            5 RKKITLVGA-GNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG---TND-YKDLENSDVVI   78 (321)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESC-GGGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE---cCC-HHHHCCCCEEE
Confidence            479999998 99999999999999986 9999999863  567788988742    233332   245 58999999999


Q ss_pred             EcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-hhhHHH
Q 028437          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVR  180 (209)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~-~lds~r  180 (209)
                      +++|.|++||++|.|++..|+++++++++++.+++|+++++++|||++    ++++++++.+++|++|++|+| .||++|
T Consensus        79 i~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd----~~t~~~~k~sg~p~~rviG~~~~LD~~R  154 (321)
T 3p7m_A           79 VTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSAR  154 (321)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEEECHHHHHHH
T ss_pred             EcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchH----HHHHHHHHhcCCCHHHEEeeccchHHHH
Confidence            999999999999999999999999999999999999999999999999    778888998999999999998 899999


Q ss_pred             HHHHHHHHcCCCCCCeeEEEE--ecccccc
Q 028437          181 AKTFYAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      +++++|+++|++|++|+++++  ||+++|+
T Consensus       155 ~~~~la~~l~v~~~~v~~~v~G~HG~t~~p  184 (321)
T 3p7m_A          155 FRTFLADELNVSVQQVQAYVMGGHGDTMVP  184 (321)
T ss_dssp             HHHHHHHHHTCCGGGEECCEEECSGGGEEE
T ss_pred             HHHHHHHHhCcCHHHceEeeecCcCCceee
Confidence            999999999999999999976  4555555

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=1.4e-34  Score=249.33  Aligned_cols=176  Identities=29%  Similarity=0.353  Sum_probs=153.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCc-----cEEEEEecC----C--chhHHHhhcCCCCCcceeEeecCCchhhhc
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIA----N--TPGVAADVGHINTRSEVAGYMGNDQLGQAL   94 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~-----~ev~l~D~~----~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~   94 (209)
                      +++|||+||||+|++|++++..|+..++.     .+|+++|++    +  ..+.+.|+.+...+. ...+..++++++++
T Consensus         3 ~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~~~i~~~~~~~~al   81 (329)
T 1b8p_A            3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-LAGMTAHADPMTAF   81 (329)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-EEEEEEESSHHHHT
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-cCcEEEecCcHHHh
Confidence            35689999999999999999999998865     399999997    3  345678888853222 22333346788999


Q ss_pred             CCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCCcHHHHHHHHHHhC-CCCCCcEEE
Q 028437           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAG-TYNEKKLFG  172 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~~~~i~~~~~~~~~-~~p~~~vig  172 (209)
                      +|||+||++||.++++|++|.+++..|+++++++++++++++ |+++++++|||++    ++++++++.+ +||++|++|
T Consensus        82 ~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~----~~t~~~~~~~~~~p~~~v~g  157 (329)
T 1b8p_A           82 KDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPAN----TNAYIAMKSAPSLPAKNFTA  157 (329)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGGEEE
T ss_pred             CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchH----HHHHHHHHHcCCCCHHHEEE
Confidence            999999999999999999999999999999999999999997 9999999999999    7788888776 899999999


Q ss_pred             EehhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          173 VTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       173 ~~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      .|.||+.|+++++|+++|+++++|++++||||++
T Consensus       158 ~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg  191 (329)
T 1b8p_A          158 MLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHS  191 (329)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSS
T ss_pred             eecHHHHHHHHHHHHHhCcCHHHceEEEEEeccC
Confidence            9999999999999999999999999988888764

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=1.1e-34  Score=249.61  Aligned_cols=169  Identities=30%  Similarity=0.399  Sum_probs=143.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCC-CcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ++||+|+|| |++|++++..|+..+++++|+|+|+++  .++.+.|+.|... ...+....   +.+++++|||+||+++
T Consensus         9 ~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~---~~~~a~~~aDvVii~a   84 (326)
T 2zqz_A            9 HQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS---AEYSDAKDADLVVITA   84 (326)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE---CCGGGGGGCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE---CCHHHhCCCCEEEEcC
Confidence            369999999 999999999999999889999999975  4566788888641 11222221   2368899999999999


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHHHH
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~~~  183 (209)
                      |.++++|++|.+++.+|+++++++++++++++|+++++++|||++    ++++++++.+++|++|+||+ |.||+.|+++
T Consensus        85 g~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~----~~t~~~~k~s~~p~~rviG~gt~LD~~R~~~  160 (326)
T 2zqz_A           85 GAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQ  160 (326)
T ss_dssp             CCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHH----HHHHHHHHHcCCCHHHEEEccccchHHHHHH
Confidence            999999999999999999999999999999999999999999999    78889999889999999999 9999999999


Q ss_pred             HHHHHcCCCCCCeeEEEEeccc
Q 028437          184 FYAGKANVNVAGLLKLLTHKNL  205 (209)
Q Consensus       184 ~la~~l~v~~~~v~~~~i~g~~  205 (209)
                      ++|+++|+++++|+. .+|||+
T Consensus       161 ~la~~lgv~~~~v~~-~v~G~H  181 (326)
T 2zqz_A          161 SIAEMVNVDARSVHA-YIMGEH  181 (326)
T ss_dssp             HHHHHHTCCGGGEEC-CEEBSS
T ss_pred             HHHHHhCCChhheEE-EEeccc
Confidence            999999999999995 455555

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=2.4e-34  Score=246.13  Aligned_cols=169  Identities=23%  Similarity=0.342  Sum_probs=149.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCC-CcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |||+|+|| |++|++++..|+..++++||+|+|+++  .++.+.|+.|... ...+....  ++ +++++|||+||+++|
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~--~~-~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA--GS-YGDLEGARAVVLAAG   76 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTEEEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE--CC-HHHhCCCCEEEECCC
Confidence            69999999 999999999999999888999999985  4556888888642 11222221  24 688999999999999


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHHHHH
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~~~~  184 (209)
                      .++++|++|.+++.+|.++++++++++++++|+++++++|||++    ++++++++.+++|++|+||+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~----~~t~~~~k~s~~p~~rviG~gt~LD~~R~~~~  152 (310)
T 2xxj_A           77 VAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRAL  152 (310)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHTCCGGGEEECTTHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchH----HHHHHHHHHcCCCHHHEEecCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999    77888888889999999999 99999999999


Q ss_pred             HHHHcCCCCCCeeEEEEecccc
Q 028437          185 YAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       185 la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      +|+++|+++++|++ .+|||++
T Consensus       153 la~~lgv~~~~v~~-~v~G~HG  173 (310)
T 2xxj_A          153 LAEYLRVAPQSVHA-YVLGEHG  173 (310)
T ss_dssp             HHHHHTSCGGGEEE-EEEBCSS
T ss_pred             HHHHhCcCHHHeEE-EEecccC
Confidence            99999999999999 6666663

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=1.2e-34  Score=249.17  Aligned_cols=172  Identities=34%  Similarity=0.576  Sum_probs=146.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCC----CcceeEeecCCchhhhcCCCCEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVV  100 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aD~V  100 (209)
                      +++||+|+|| |.+|++++..|+..++. +|+++|+++  .++.+.|+.+...    +..+..   ++|+ +++++||+|
T Consensus         6 ~~~kI~viGa-G~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~---t~d~-~a~~~aDiV   79 (324)
T 3gvi_A            6 ARNKIALIGS-GMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG---ANDY-AAIEGADVV   79 (324)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESSG-GGGTTCSEE
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE---eCCH-HHHCCCCEE
Confidence            3579999999 99999999999999985 999999986  3456778877642    233432   3465 899999999


Q ss_pred             EEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-hhhHH
Q 028437          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVV  179 (209)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~-~lds~  179 (209)
                      |+++|.|+++|++|.|++..|+++++++++++++++|+++++++|||++    ++++++++.+++|++|++|+| .||++
T Consensus        80 Iiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd----~~t~~~~k~sg~p~~rviG~~~~LD~~  155 (324)
T 3gvi_A           80 IVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSA  155 (324)
T ss_dssp             EECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCHHHHHH
T ss_pred             EEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcH----HHHHHHHHhcCCCHHHEEeecCccHHH
Confidence            9999999999999999999999999999999999999999999999999    777888888899999999998 79999


Q ss_pred             HHHHHHHHHcCCCCCCeeEEEE--ecccccc
Q 028437          180 RAKTFYAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       180 r~~~~la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      |+++++|+++|+++++|+++++  ||+++|+
T Consensus       156 R~~~~la~~lgv~~~~v~~~v~G~HG~t~~p  186 (324)
T 3gvi_A          156 RFRYFLSEEFNVSVEDVTVFVLGGHGDSMVP  186 (324)
T ss_dssp             HHHHHHHHHHTCCGGGEECCEEECSGGGEEE
T ss_pred             HHHHHHHHHhCcCHHHCeEEEEcCCCCceee
Confidence            9999999999999999999876  5555555

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2e-34  Score=247.31  Aligned_cols=172  Identities=30%  Similarity=0.430  Sum_probs=143.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCC-CcceeEeecCCchhhhcCCCCEEE
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aD~Vi  101 (209)
                      +++++||+|+|| |++|++++..|+..+++++|+++|+++  .++.+.|+.+... ...++..  .++ ++++++||+||
T Consensus         4 ~~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~--~~~-~~a~~~aDvVi   79 (318)
T 1y6j_A            4 VKSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY--AGD-YSDVKDCDVIV   79 (318)
T ss_dssp             ---CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEE
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEE--ECC-HHHhCCCCEEE
Confidence            345689999999 999999999999999989999999985  4567888888742 1123222  234 68899999999


Q ss_pred             EcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHH
Q 028437          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (209)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r  180 (209)
                      +++|.|+++|++|.|++.+|+++++++++.+.+++|+++++++|||++    ++++++++.+++|++|+||+ |.+|+.|
T Consensus        80 i~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~----~~~~~~~k~s~~p~~rviG~gt~Ld~~r  155 (318)
T 1y6j_A           80 VTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIR  155 (318)
T ss_dssp             ECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHH----HHHHHHHHHHTCCTTTEEECTTHHHHHH
T ss_pred             EcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHH----HHHHHHHHHcCCCHHHEeccCCchHHHH
Confidence            999999999999999999999999999999999999999999999999    77888888889999999999 9999999


Q ss_pred             HHHHHHHHcCCCCCCeeEEEEeccc
Q 028437          181 AKTFYAGKANVNVAGLLKLLTHKNL  205 (209)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~~i~g~~  205 (209)
                      +++++|+++|+++++|++ .+|||+
T Consensus       156 ~~~~la~~lgv~~~~v~~-~v~G~H  179 (318)
T 1y6j_A          156 FRYLLSEKLGVDVKNVHG-YIIGEH  179 (318)
T ss_dssp             HHHHHHTTTTCCTTTEEC-CEEBCS
T ss_pred             HHHHHHHHhCCCHHHeEE-EEeccc
Confidence            999999999999999998 666666

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=4e-34  Score=244.49  Aligned_cols=166  Identities=28%  Similarity=0.479  Sum_probs=147.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCC----CCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      ||+|+|| |.+|++++..++..++ +||+|+|+++  .++.+.|+.+..    ...++..   ++|+ +++++||+||++
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~~   74 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG---SNSY-EDMRGSDIVLVT   74 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEEEC
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEE---CCCH-HHhCCCCEEEEe
Confidence            7999999 9999999999998888 8899999986  456677887752    1223433   3465 799999999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHHH
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~~  182 (209)
                      +|.++++|++|.|++.+|+++++++++++++++|++++|++|||++    ++++++++.+++|++|++|+ |.||+.|++
T Consensus        75 ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~----~~t~~~~k~~~~p~~rviG~gt~LD~~R~~  150 (308)
T 2d4a_B           75 AGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMA  150 (308)
T ss_dssp             CSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHHHhcCCChhhEEEecccchHHHHH
Confidence            9999999999999999999999999999999999999999999999    78888989889999999999 999999999


Q ss_pred             HHHHHHcCCCCCCeeEEEEecccc
Q 028437          183 TFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       183 ~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      +++|+++|+++++|+++ +|||++
T Consensus       151 ~~la~~lgv~~~~v~~~-v~G~Hg  173 (308)
T 2d4a_B          151 YYISQKLGVSFKSVNAI-VLGMHG  173 (308)
T ss_dssp             HHHHHHHTSCGGGEECC-EEBCSS
T ss_pred             HHHHHHhCcChhHeEEE-EEeccC
Confidence            99999999999999987 777763

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=7.2e-34  Score=242.36  Aligned_cols=169  Identities=30%  Similarity=0.384  Sum_probs=146.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec--CC--chhHHHhhcCCCC-CcceeEeecCCchhhhcCCCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--AN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~--~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      |||+|+||+|++|++++..|+..++..+++|+|+  ++  .++...|+.+... ...+....  ++ +++++|||+||++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVi~~   77 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GG-YEDTAGSDVVVIT   77 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe--CC-HHHhCCCCEEEEc
Confidence            6999999779999999999999888889999999  64  2445677776532 11222221  24 6889999999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHHH
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~~  182 (209)
                      +|.++++|++|.+++..|+++++++++++++++|+++++++|||++    ++++++++.+++|++|++|+ |.||+.|++
T Consensus        78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~----~~~~~~~~~~~~p~~rviG~gt~Ld~~r~~  153 (303)
T 1o6z_A           78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFR  153 (303)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHH----HHHHHHHHHSSSCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHH----HHHHHHHHHcCCCHHHeeecccchhHHHHH
Confidence            9999999999999999999999999999999999999999999999    78889999999999999999 999999999


Q ss_pred             HHHHHHcCCCCCCeeEEEEeccc
Q 028437          183 TFYAGKANVNVAGLLKLLTHKNL  205 (209)
Q Consensus       183 ~~la~~l~v~~~~v~~~~i~g~~  205 (209)
                      +++|+++|+++++|+.+ +|||+
T Consensus       154 ~~la~~l~v~~~~v~~~-v~G~H  175 (303)
T 1o6z_A          154 YVLSEEFDAPVQNVEGT-ILGEH  175 (303)
T ss_dssp             HHHHHHHTCCGGGEECC-EEECS
T ss_pred             HHHHHHhCcCHHHeEEE-EEeCC
Confidence            99999999999999955 45554

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=8.1e-34  Score=243.01  Aligned_cols=171  Identities=31%  Similarity=0.469  Sum_probs=146.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec--CC--chhHHHhhcCCC-CC-cceeEeecCCchhhhcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--AN--TPGVAADVGHIN-TR-SEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~--~~--~~~~~~dl~~~~-~~-~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      |||+||||+|++|++++..|+..++..+++|+|+  ++  ..+.+.|+.+.. .. ..+.....+++++++++|||+||+
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            5999999999999999999999988789999998  54  345566776643 11 122222112236899999999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHH
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~  181 (209)
                      +||.++++|++|.+++..|+++++++++++++++ +++++++|||++    ++++++++.+++|++|++|+ |.||+.|+
T Consensus        81 ~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~----~~t~~~~k~~~~p~~rviG~gt~LD~~r~  155 (313)
T 1hye_A           81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRF  155 (313)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHH----HHHHHHHHHHCCCTTSEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHH----HHHHHHHHhhCcChhcEEEeCccHHHHHH
Confidence            9999999999999999999999999999999999 999999999999    77888888889999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCeeEEEEeccc
Q 028437          182 KTFYAGKANVNVAGLLKLLTHKNL  205 (209)
Q Consensus       182 ~~~la~~l~v~~~~v~~~~i~g~~  205 (209)
                      ++++|+++|+++++|+.++ |||+
T Consensus       156 ~~~la~~lgv~~~~v~~~v-~G~H  178 (313)
T 1hye_A          156 KVAIAKFFGVHIDEVRTRI-IGEH  178 (313)
T ss_dssp             HHHHHHHHTCCGGGEECCE-EECS
T ss_pred             HHHHHHHhCcCHHHeEEEE-eecc
Confidence            9999999999999999854 5555

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=8.4e-34  Score=243.38  Aligned_cols=170  Identities=25%  Similarity=0.319  Sum_probs=146.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCC--CcceeEeecCCchhhhcCCCCEEEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      ++|||+|+|| |++|++++..|+..+++++|+|+|+++  .++.+.|+.+...  ...+....   +.+++++|||+||+
T Consensus         5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~---~~~~a~~~aDvVvi   80 (317)
T 3d0o_A            5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA---GEYSDCHDADLVVI   80 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE---CCGGGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe---CCHHHhCCCCEEEE
Confidence            3479999999 999999999999988888999999975  3455667766421  11222221   23688999999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHH
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~  181 (209)
                      ++|.++++|++|.+++.+|+++++++++++++++|+++++++|||++    ++++++++.+++|++|+||+ |.+|+.|+
T Consensus        81 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~----~~t~~~~k~~~~p~~rviG~gt~lD~~r~  156 (317)
T 3d0o_A           81 CAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARF  156 (317)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHH----HHHHHHHHHhCCCHHHEEecCccccHHHH
Confidence            99999999999999999999999999999999999999999999999    78889999889999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCeeEEEEeccc
Q 028437          182 KTFYAGKANVNVAGLLKLLTHKNL  205 (209)
Q Consensus       182 ~~~la~~l~v~~~~v~~~~i~g~~  205 (209)
                      ++++|+++|+++++|+.+ +|||+
T Consensus       157 ~~~la~~l~v~~~~v~~~-v~G~H  179 (317)
T 3d0o_A          157 RLLLSEAFDVAPRSVDAQ-IIGEH  179 (317)
T ss_dssp             HHHHHHHHTSCGGGCBCC-EEBCS
T ss_pred             HHHHHHHhCcChhhEEEE-EEecC
Confidence            999999999999999954 55555

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=1.5e-33  Score=240.48  Aligned_cols=171  Identities=22%  Similarity=0.337  Sum_probs=143.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC-chhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      +++||+|+|| |.+|+.++..++..+++++|+|+|+++ ..+.+.|+.+...+ ++..   ++|+ +++++||+||+++|
T Consensus        13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~-~i~~---t~d~-~~l~~aD~Vi~aag   86 (303)
T 2i6t_A           13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLP-NVEI---SKDL-SASAHSKVVIFTVN   86 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCT-TEEE---ESCG-GGGTTCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCC-CeEE---eCCH-HHHCCCCEEEEcCC
Confidence            4479999999 999999999999999989999999986 44556677764322 4444   3576 88999999999999


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHHHHH
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~~~~  184 (209)
                      .+ +||++|.|++.+|+++++++++++++++|+++++++|||++    ++++++++.++||++|++|+ |.||+.|++++
T Consensus        87 ~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~----~~t~~~~~~~~~p~~rviG~gt~Ld~~R~~~~  161 (303)
T 2i6t_A           87 SL-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVE----IMTYVTWKLSTFPANRVIGIGCNLDSQRLQYI  161 (303)
T ss_dssp             C-----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHHHHH
T ss_pred             CC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHH----HHHHHHHHhcCCCHHHeeCCCCCchHHHHHHH
Confidence            96 79999999999999999999999999999999999999999    88999999999999999999 99999999999


Q ss_pred             HHHHcCCCCCCeeEEEE--ecccccc
Q 028437          185 YAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       185 la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      +|+++|+++++|+.+++  ||+++++
T Consensus       162 la~~lgv~~~~v~~~v~G~Hg~s~~p  187 (303)
T 2i6t_A          162 ITNVLKAQTSGKEVWVIGEQGEDKVL  187 (303)
T ss_dssp             HHHTSCCTTGGGGEEEEBSCSSSCEE
T ss_pred             HHHHcCCChHHeEEEEecCCCCCccc
Confidence            99999999999998775  4444443

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=4.2e-33  Score=238.89  Aligned_cols=171  Identities=23%  Similarity=0.293  Sum_probs=148.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCC--cceeEeecCCchhhhcCCCCEEEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      +++||+|+|+ |.+|++++..|+..++.++|+++|+++  .++.+.++.+....  ...+..  +++ ++++++||+||+
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~--~~~-~~al~~aDvVii   80 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW--HGD-YDDCRDADLVVI   80 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEE--ECC-GGGTTTCSEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEE--cCc-HHHhCCCCEEEE
Confidence            4579999999 999999999999888888999999985  34456677764321  122322  123 688999999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHH
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~  181 (209)
                      ++|+++++|++|.+++.+|.++++++++++++++|+++++++|||++    ++++++++.+++|++|++|+ |.+|+.|+
T Consensus        81 a~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~----~~~~~~~~~s~~p~~rviG~gt~lD~~r~  156 (316)
T 1ldn_A           81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARF  156 (316)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHH----HHHHHHHHHHTCCGGGEEECTTHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchH----HHHHHHHHHhCCCHHHEEecccchHHHHH
Confidence            99999999999999999999999999999999999999999999999    77888888889999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCeeEEEEecccc
Q 028437          182 KTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       182 ~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      ++++|+++|+++++|++ .+|||++
T Consensus       157 ~~~la~~l~v~~~~v~~-~v~G~HG  180 (316)
T 1ldn_A          157 RFLLGEYFSVAPQNVHA-YIIGEHG  180 (316)
T ss_dssp             HHHHHHHHTSCGGGEEE-EEEBCSS
T ss_pred             HHHHHHHhCCCHHHeEE-EEecccC
Confidence            99999999999999998 6777763

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=7.9e-33  Score=236.53  Aligned_cols=166  Identities=30%  Similarity=0.513  Sum_probs=138.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCC----CCcceeEeecCCchhhhcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      |||+|+|| |++|++++..|+..|++ +|+++|+++  .++.+.|+.+..    ...++..   ++|+ +++++||+||+
T Consensus         3 ~kI~VIGa-G~vG~~~a~~la~~g~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~   76 (309)
T 1ur5_A            3 KKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNNY-ADTANSDVIVV   76 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCC-eEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEE---CCCH-HHHCCCCEEEE
Confidence            69999999 99999999999999976 499999976  345567787752    1223332   3566 88999999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHH
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~  181 (209)
                      ++|.|+++|++|.|++.+|.++++++++++++++|+++++++|||++    ++++++++.+++|++|++|+ |.||+.|+
T Consensus        77 a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~----~~t~~~~~~~~~~~~rviG~gt~LD~~r~  152 (309)
T 1ur5_A           77 TSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARY  152 (309)
T ss_dssp             CCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCHHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchH----HHHHHHHHHcCCCHHHEEECCcchHHHHH
Confidence            99999999999999999999999999999999999999999999999    77888888889999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCeeEEEEeccc
Q 028437          182 KTFYAGKANVNVAGLLKLLTHKNL  205 (209)
Q Consensus       182 ~~~la~~l~v~~~~v~~~~i~g~~  205 (209)
                      ++++|+++|+++++|+. .+|||+
T Consensus       153 ~~~la~~lgv~~~~v~~-~v~G~H  175 (309)
T 1ur5_A          153 RTFIAMEAGVSVEDVQA-MLMGGH  175 (309)
T ss_dssp             HHHHHHHHTCCGGGEEE-CCEECS
T ss_pred             HHHHHHHhCCChhheeE-EEecCc
Confidence            99999999999999997 566665

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=3.3e-32  Score=233.95  Aligned_cols=171  Identities=30%  Similarity=0.524  Sum_probs=146.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCC----CCcceeEeecCCchhhhcCCCC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSD   98 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aD   98 (209)
                      |++++||+|+|| |.+|+.++..|+..|++ +|+|+|+++  .++...++.+..    ...++..   ++|+ +++++||
T Consensus         1 m~~~~kI~VIGa-G~vG~~ia~~la~~g~~-~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD   74 (322)
T 1t2d_A            1 MAPKAKIVLVGS-GMIGGVMATLIVQKNLG-DVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG---SNTY-DDLAGAD   74 (322)
T ss_dssp             -CCCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE---ECCG-GGGTTCS
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCC
Confidence            456689999999 99999999999999986 499999986  344455666641    1223433   3576 8899999


Q ss_pred             EEEEcCCCCCCCCCC-----hhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 028437           99 VVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (209)
Q Consensus        99 ~Vi~~ag~~~~~g~~-----r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~  173 (209)
                      +||+++|.|+++|++     |.|++.+|+++++++++++++++|+++++++|||++    ++++++++.++||++|++|+
T Consensus        75 ~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~----~~t~~~~~~~g~~~~rviG~  150 (322)
T 1t2d_A           75 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGL  150 (322)
T ss_dssp             EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHH----HHHHHHHHHHCCCGGGEEEC
T ss_pred             EEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChH----HHHHHHHHhcCCChHHEEec
Confidence            999999999999998     999999999999999999999999999999999999    67888888888999999999


Q ss_pred             e-hhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          174 T-TLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       174 ~-~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      | .||++|+++++|+++|+++++|+.+ +|||++
T Consensus       151 gt~ld~~R~~~~la~~lgv~~~~v~~~-v~G~HG  183 (322)
T 1t2d_A          151 GGVLDTSRLKYYISQKLNVCPRDVNAH-IVGAHG  183 (322)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCGGGEECC-EEBCSS
T ss_pred             cCcccHHHHHHHHHHHhCCCHHHeEEE-EEcCCC
Confidence            5 7999999999999999999999988 666653

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=99.98  E-value=8e-32  Score=232.32  Aligned_cols=172  Identities=28%  Similarity=0.501  Sum_probs=145.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCC----CCcceeEeecCCchhhhcCCCCEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVV  100 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aD~V  100 (209)
                      ++|||+|+|| |.+|.+++..|+..|++ +|+++|+++.  ++...++.+..    ...++..   ++|+++++++||+|
T Consensus         8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~~ea~~~aDiV   82 (331)
T 1pzg_A            8 RRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGADCV   82 (331)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE---eCCHHHHhCCCCEE
Confidence            3479999999 99999999999998875 5999999863  33334444431    1223433   45787799999999


Q ss_pred             EEcCCCCCCCCC-----ChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-e
Q 028437          101 IIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-T  174 (209)
Q Consensus       101 i~~ag~~~~~g~-----~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~  174 (209)
                      |+++|.|+++|+     +|.+++.+|+++++++++.+++++|+++++++|||++    ++++++++.+++|++|++|+ |
T Consensus        83 i~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~----~~t~~~~~~~~~~~~rviG~gt  158 (331)
T 1pzg_A           83 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLD----CMVKVMCEASGVPTNMICGMAC  158 (331)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCH
T ss_pred             EEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchH----HHHHHHHHhcCCChhcEEeccc
Confidence            999999999999     8999999999999999999999999999999999999    67888888888999999999 5


Q ss_pred             hhhHHHHHHHHHHHcCCCCCCeeEEEEecc---cccc
Q 028437          175 TLDVVRAKTFYAGKANVNVAGLLKLLTHKN---LVFI  208 (209)
Q Consensus       175 ~lds~r~~~~la~~l~v~~~~v~~~~i~g~---~~~~  208 (209)
                      .||++|+++++|+++|+++++|+.+ +||+   ++|+
T Consensus       159 ~LD~~R~~~~la~~lgv~~~~v~~~-v~G~Hg~~~~p  194 (331)
T 1pzg_A          159 MLDSGRFRRYVADALSVSPRDVQAT-VIGTHGDCMVP  194 (331)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEE
T ss_pred             hHHHHHHHHHHHHHhCCCHHHceEE-EecCCCCCEee
Confidence            8999999999999999999999975 5555   6655

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=99.97  E-value=1.5e-31  Score=230.34  Aligned_cols=168  Identities=35%  Similarity=0.578  Sum_probs=144.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCC----CCcceeEeecCCchhhhcCCCCEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aD~Vi  101 (209)
                      ++||+|+|| |.+|.+++..|+..|++ +|+++|+++.  .+...++.+..    ...++..   ++|+ +++++||+||
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~g~~-~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~VI   87 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQKDLG-DVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG---ENNY-EYLQNSDVVI   87 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE---CCCH-HHHCCCCEEE
Confidence            369999999 99999999999999986 5999999863  33344554432    1223443   3576 8899999999


Q ss_pred             EcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-hhhHHH
Q 028437          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVR  180 (209)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~-~lds~r  180 (209)
                      +++|.|+++|++|.|++.+|+++++++++++.+++|+++++++|||++    ++++++++.++||++|++|+| .||++|
T Consensus        88 ~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~----~~t~~~~~~~~~~~~rviG~~t~Ld~~R  163 (328)
T 2hjr_A           88 ITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSAR  163 (328)
T ss_dssp             ECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEESCHHHHHHH
T ss_pred             EcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchH----HHHHHHHHhcCCChhhEEEeCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999    678888888899999999996 899999


Q ss_pred             HHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          181 AKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      +++++|+++|+++++|+.+ +|||++
T Consensus       164 ~~~~la~~lgv~~~~v~~~-v~G~Hg  188 (328)
T 2hjr_A          164 FRCNLSRALGVKPSDVSAI-VVGGHG  188 (328)
T ss_dssp             HHHHHHHHHTSCGGGEECC-EEBCSS
T ss_pred             HHHHHHHHhCCCHHHeeEE-EecCCC
Confidence            9999999999999999987 666664

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=99.97  E-value=5.4e-30  Score=218.44  Aligned_cols=166  Identities=28%  Similarity=0.411  Sum_probs=131.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCC-CcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |||+|+|| |.+|++++..|+..|+.++|+++|+++.  .+...++.+... ....+...  ++ ++++++||+||+++|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~~-~~a~~~aDvVIi~~~   76 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH--GG-HSELADAQVVILTAG   76 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE--EC-GGGGTTCSEEEECC-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE--CC-HHHhCCCCEEEEcCC
Confidence            59999999 9999999999999998889999999852  445667776541 11122211  24 478999999999999


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHHHHH
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~~~~  184 (209)
                      .++++|++|.|++.+|+++++++++.+.+++|+++++++|||++    ++++.+++.+  |++|++|+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~----~~~~~~~~~~--~~~rviG~gt~Ld~~r~~~~  150 (304)
T 2v6b_A           77 ANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVD----LLTDLATQLA--PGQPVIGSGTVLDSARFRHL  150 (304)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHH----HHHHHHHHHS--CSSCEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchH----HHHHHHHHhC--ChhcEEeCCcCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999    6677777765  89999999 99999999999


Q ss_pred             HHHHcCCCCCCeeEEEEeccc
Q 028437          185 YAGKANVNVAGLLKLLTHKNL  205 (209)
Q Consensus       185 la~~l~v~~~~v~~~~i~g~~  205 (209)
                      +|+++|+++++|+. .+|||+
T Consensus       151 la~~l~v~~~~v~~-~v~G~H  170 (304)
T 2v6b_A          151 MAQHAGVDGTHAHG-YVLGEH  170 (304)
T ss_dssp             HHHHHTSCGGGEEC-CEEESS
T ss_pred             HHHHhCcCHHHceE-EEecCC
Confidence            99999999999999 666666

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=99.97  E-value=1.7e-29  Score=215.93  Aligned_cols=168  Identities=33%  Similarity=0.509  Sum_probs=141.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCC----CCcceeEeecCCchhhhcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      |||+|+|+ |.+|..++..|++.+...+|+++|+++.  ++...++.+..    ...++..   ++|++ ++++||+||+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~~-~l~~aDvVii   75 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG---SNDYA-DTANSDIVII   75 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE---ESCGG-GGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEE---CCCHH-HHCCCCEEEE
Confidence            69999999 9999999999998643349999999863  33344555531    1223332   34664 4999999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHH
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~  181 (209)
                      +++.|+++|++|.|++.+|+++++++++.+++++|+++++++|||++    .+++++++.+++|++|++|+ |.||+.|+
T Consensus        76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~----~~~~~~~~~~~~~~~rviG~gt~ld~~r~  151 (310)
T 1guz_A           76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARF  151 (310)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHH----HHHHHHHHHHCSCGGGEEEECHHHHHHHH
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchH----HHHHHHHHhcCCChHHEEECCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999    66778888888999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCeeEEEEecccc
Q 028437          182 KTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       182 ~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      ++++|+++|+++++|+. .+|||++
T Consensus       152 ~~~la~~l~v~~~~v~~-~v~G~Hg  175 (310)
T 1guz_A          152 RSFIAMELGVSMQDINA-CVLGGHG  175 (310)
T ss_dssp             HHHHHHHHTCCGGGEEC-CEEECSG
T ss_pred             HHHHHHHhCCCHHHeEE-EEEcccC
Confidence            99999999999999998 5666663

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=99.96  E-value=4.9e-28  Score=207.93  Aligned_cols=177  Identities=28%  Similarity=0.383  Sum_probs=148.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCc-----cEEEEEecCC----chhHHHhhcCCCCCcceeEeecCCchhhhcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALE   95 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~-----~ev~l~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~   95 (209)
                      |+++|||+||||+||+|++++..|+..|+.     .+|+++|+++    ..+...|+.+..... +..+..+.+++++++
T Consensus         1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~-~~di~~~~~~~~a~~   79 (327)
T 1y7t_A            1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPL-LAGLEATDDPKVAFK   79 (327)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEEESCHHHHTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccc-cCCeEeccChHHHhC
Confidence            556789999999999999999999998864     3999999964    234456777653221 222333356788999


Q ss_pred             CCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCCcHHHHHHHHHHhC-CCCCCcEEEE
Q 028437           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAG-TYNEKKLFGV  173 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~~~~i~~~~~~~~~-~~p~~~vig~  173 (209)
                      ++|+|||+||.++.+++++.+++..|+.+++++++++++++ |+++++++|||++    .+++...+.+ ++|+.++.|.
T Consensus        80 ~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~----~~~~~~~~~~~~~~p~~~yg~  155 (327)
T 1y7t_A           80 DADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN----TNALIAYKNAPGLNPRNFTAM  155 (327)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGGEEEC
T ss_pred             CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchh----hhHHHHHHHcCCCChhheecc
Confidence            99999999999988889999999999999999999999997 9999999999987    4455555655 6899999999


Q ss_pred             ehhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          174 TTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       174 ~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      |.+|+.|+.+++++++|+++..++.+.+||+++
T Consensus       156 tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~  188 (327)
T 1y7t_A          156 TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHS  188 (327)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS
T ss_pred             chHHHHHHHHHHHHHhCcChhheeeeEEEcCCC
Confidence            999999999999999999999999999999874

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=99.96  E-value=3.8e-28  Score=207.95  Aligned_cols=173  Identities=34%  Similarity=0.536  Sum_probs=144.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCC----CCcceeEeecCCchhhhcCCCC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSD   98 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aD   98 (209)
                      |+++|||+|+|| |.+|+.++..|++.|+. +|+++|+++.  .+...++.+..    ...++..   ++|+ +++++||
T Consensus         1 M~~~~kI~VIGa-G~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~a~~~aD   74 (317)
T 2ewd_A            1 MIERRKIAVIGS-GQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG---TDDY-ADISGSD   74 (317)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCS
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCC
Confidence            556789999999 99999999999998874 6999999863  22233443321    1223332   3466 7899999


Q ss_pred             EEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-hhh
Q 028437           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLD  177 (209)
Q Consensus        99 ~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~-~ld  177 (209)
                      +||+++|.|+++|++|.|.+.+|.++++++++++++++|+++++++|||++    ++++.+++.+++|++|++|+| .+|
T Consensus        75 iVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~----~~~~~~~~~~~~~~~rviG~~t~ld  150 (317)
T 2ewd_A           75 VVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLD  150 (317)
T ss_dssp             EEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH----HHHHHHHHHHCCCGGGEEESCHHHH
T ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHH----HHHHHHHHhhCCCHHHEEeccCcHH
Confidence            999999999999999999999999999999999999999999999999999    667777787789999999995 799


Q ss_pred             HHHHHHHHHHHcCCCCCCeeEEEEecc---cccc
Q 028437          178 VVRAKTFYAGKANVNVAGLLKLLTHKN---LVFI  208 (209)
Q Consensus       178 s~r~~~~la~~l~v~~~~v~~~~i~g~---~~~~  208 (209)
                      +.|+++++|+++|+++++++++ +||+   ++|+
T Consensus       151 ~~r~~~~la~~lg~~~~~v~~~-v~g~Hg~~~~~  183 (317)
T 2ewd_A          151 SSRFRTFIAQHFGVNASDVSAN-VIGGHGDGMVP  183 (317)
T ss_dssp             HHHHHHHHHHHHTSCGGGEECC-EEBCSSTTCEE
T ss_pred             HHHHHHHHHHHhCcChhhceEE-EEecCCCceeE
Confidence            9999999999999999999998 5555   6665

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=99.95  E-value=1e-27  Score=205.61  Aligned_cols=170  Identities=30%  Similarity=0.516  Sum_probs=141.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCC---CCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN---TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~---~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      |||+|+|+ |.+|+.++..|+..|+.++|+++|+++.  .+...++.+..   ....+..   + + .+++++||+||++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~-d-~~~~~~aDvViia   74 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA---G-D-YADLKGSDVVIVA   74 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE---C-C-GGGGTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe---C-C-HHHhCCCCEEEEc
Confidence            59999999 9999999999999888789999999752  22333333321   1112221   2 5 4789999999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhHHHHH
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds~r~~  182 (209)
                      ++.+++++++|.|++.+|+++++++++.+++++|+++++++|||++    ++++++++.++||++|++|+ |.+|+.|++
T Consensus        75 v~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~----~~~~~~~~~~~~~~~rviG~~t~ld~~r~~  150 (319)
T 1a5z_A           75 AGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLR  150 (319)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHTCCTTTEEECTTHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHH----HHHHHHHHHhCCChhhEEeeCccHHHHHHH
Confidence            9999999999999999999999999999999999999999999999    66778877778999999999 579999999


Q ss_pred             HHHHHHcCCCCCCeeEEEE--ecccccc
Q 028437          183 TFYAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       183 ~~la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      +++|+++|+++++|+++++  ||.++|+
T Consensus       151 ~~la~~lgv~~~~v~~~v~G~hg~~~~p  178 (319)
T 1a5z_A          151 TLIAQHCGFSPRSVHVYVIGEHGDSEVP  178 (319)
T ss_dssp             HHHHHHHTCCGGGEECCEEBCSSTTCEE
T ss_pred             HHHHHHhCcCHHHceEEEEeCCCCCccc
Confidence            9999999999999998655  3466665

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=99.94  E-value=3.5e-27  Score=210.61  Aligned_cols=164  Identities=18%  Similarity=0.183  Sum_probs=133.4

Q ss_pred             CCeEEEEcCCCch-HHHHHHHHHh--CCC-ccEEEEEecCC--chhH-----HHhhc-CCCCCcceeEeecCCchhhhcC
Q 028437           28 DRKVAVLGAAGGI-GQPLALLMKL--NPL-VSRLALYDIAN--TPGV-----AADVG-HINTRSEVAGYMGNDQLGQALE   95 (209)
Q Consensus        28 ~~kI~IiGasG~v-G~~la~~L~~--~g~-~~ev~l~D~~~--~~~~-----~~dl~-~~~~~~~v~~~~~~~d~~~a~~   95 (209)
                      +|||+|+|| |++ |..++..|+.  .++ ..+|+|+|+++  .+..     ..++. +...+.++..   ++|++++++
T Consensus         7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~---t~D~~eal~   82 (450)
T 1s6y_A            7 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL---TLDRRRALD   82 (450)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEE---eCCHHHHhC
Confidence            579999999 888 7778777776  565 67999999976  4221     11221 1222334443   458889999


Q ss_pred             CCCEEEEcCCCCCCCCCChh--------------------HHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHH
Q 028437           96 DSDVVIIPAGVPRKPGMTRD--------------------DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA  155 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g~~r~--------------------~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~  155 (209)
                      |||+||+++|++++++++|.                    .+..+|+++++++++.|+++||++|+|++|||++    ++
T Consensus        83 gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvd----iv  158 (450)
T 1s6y_A           83 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAG----MV  158 (450)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HH
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH----HH
Confidence            99999999999877776664                    3478999999999999999999999999999999    89


Q ss_pred             HHHHHHhCCCCCCcEEEEehhhHHHHHHHHHHHcCCCCCCeeEEEEe
Q 028437          156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLLTH  202 (209)
Q Consensus       156 ~~~~~~~~~~p~~~vig~~~lds~r~~~~la~~l~v~~~~v~~~~i~  202 (209)
                      |+++++.+  |.+|+||+|+.. .|+++++|+.+|+++++|+.++++
T Consensus       159 T~a~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~v~G  202 (450)
T 1s6y_A          159 TEAVLRYT--KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHIDFAG  202 (450)
T ss_dssp             HHHHHHHC--CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEEEEE
T ss_pred             HHHHHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEEEEe
Confidence            99999885  788999999764 489999999999999999999987

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=99.94  E-value=3.3e-27  Score=201.37  Aligned_cols=173  Identities=20%  Similarity=0.293  Sum_probs=137.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCC--CCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      ||||+|+|+ |.+|..++..|++.|+..+|+++|+++.  .+...++.+..  ....+...  ++++ +++++||+||++
T Consensus         1 m~kI~VIGa-G~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            1 ARKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV--INDW-AALADADVVIST   76 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE--ESCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEE--eCCH-HHhCCCCEEEEe
Confidence            369999998 9999999999999884349999999752  23333443321  11122221  2366 789999999999


Q ss_pred             CCCCCC----CCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhH
Q 028437          104 AGVPRK----PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDV  178 (209)
Q Consensus       104 ag~~~~----~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds  178 (209)
                      ++.+++    +|++|.+++.+|+++++++++.+.+++|+++++++|||++    ++++++++.+++|++|++|+ |.+|+
T Consensus        77 v~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~----~~~~~~~~~~~~~~~rvig~gt~ld~  152 (309)
T 1hyh_A           77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDT  152 (309)
T ss_dssp             CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHH
T ss_pred             cCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHH----HHHHHHHHhcCCCHHHEeecCccchH
Confidence            999888    8999999999999999999999999999999999999999    77888888888999999999 99999


Q ss_pred             HHHHHHHHHHcCCCCCCeeEEEE--ecccccc
Q 028437          179 VRAKTFYAGKANVNVAGLLKLLT--HKNLVFI  208 (209)
Q Consensus       179 ~r~~~~la~~l~v~~~~v~~~~i--~g~~~~~  208 (209)
                      .|+++++++.+++++++++++++  ||+.+|+
T Consensus       153 ~r~~~~~a~~l~~~~~~v~~~v~G~hg~~~~~  184 (309)
T 1hyh_A          153 ARMQRAVGEAFDLDPRSVSGYNLGEHGNSQFV  184 (309)
T ss_dssp             HHHHHHHHHHHTCCGGGCBCCEEBCTTTTCEE
T ss_pred             HHHHHHHHHHhCCChhheEEEEEeCCCCcEee
Confidence            99999999999999999998666  3444443

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=99.94  E-value=6.3e-27  Score=209.93  Aligned_cols=168  Identities=18%  Similarity=0.191  Sum_probs=134.8

Q ss_pred             CCeEEEEcCCCch-HHHHHHHHHhC--CC-ccEEEEEecCCchhH-HHhhcC-----CCCCcceeEeecCCchhhhcCCC
Q 028437           28 DRKVAVLGAAGGI-GQPLALLMKLN--PL-VSRLALYDIANTPGV-AADVGH-----INTRSEVAGYMGNDQLGQALEDS   97 (209)
Q Consensus        28 ~~kI~IiGasG~v-G~~la~~L~~~--g~-~~ev~l~D~~~~~~~-~~dl~~-----~~~~~~v~~~~~~~d~~~a~~~a   97 (209)
                      ++||+|+|| |++ |..++..|+..  ++ ..+|+|+|+++.... ..++.+     ...+.++..   ++|++++++||
T Consensus        28 ~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~---t~D~~eal~~A  103 (472)
T 1u8x_X           28 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAA---TTDPEEAFTDV  103 (472)
T ss_dssp             CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEE---ESCHHHHHSSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEE---ECCHHHHHcCC
Confidence            469999999 888 55677778777  66 679999999862111 122222     122334443   45888999999


Q ss_pred             CEEEEcCCCCCCCCCCh--------------------hHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHH
Q 028437           98 DVVIIPAGVPRKPGMTR--------------------DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE  157 (209)
Q Consensus        98 D~Vi~~ag~~~~~g~~r--------------------~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~  157 (209)
                      |+||+++|+++.++++|                    .++..+|+++++++++.|+++||++|+|++|||++    ++|+
T Consensus       104 D~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvd----i~T~  179 (472)
T 1u8x_X          104 DFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAA----IVAE  179 (472)
T ss_dssp             SEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHH----HHHH
T ss_pred             CEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH----HHHH
Confidence            99999999987666655                    34478999999999999999999999999999999    8899


Q ss_pred             HHHHhCCCCCCcEEEEehhhHHHHHHHHHHHcCCCC-CCeeEEEEecccc
Q 028437          158 VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV-AGLLKLLTHKNLV  206 (209)
Q Consensus       158 ~~~~~~~~p~~~vig~~~lds~r~~~~la~~l~v~~-~~v~~~~i~g~~~  206 (209)
                      ++++.+  |+.|+||+|... .|+++++|+.+|+++ ++|+.++++.|+.
T Consensus       180 ~~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~v~GlNH~  226 (472)
T 1u8x_X          180 ATRRLR--PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNHF  226 (472)
T ss_dssp             HHHHHS--TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETTE
T ss_pred             HHHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEEEeccchh
Confidence            998885  888999999754 389999999999998 9999999987664

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=99.93  E-value=2.2e-25  Score=197.28  Aligned_cols=167  Identities=18%  Similarity=0.190  Sum_probs=130.2

Q ss_pred             CCeEEEEcCCCch-HHHHHHHHHh--CCC-ccEEEEEecCCchh-HHHhhcCCCC--CcceeEeecCCchhhhcCCCCEE
Q 028437           28 DRKVAVLGAAGGI-GQPLALLMKL--NPL-VSRLALYDIANTPG-VAADVGHINT--RSEVAGYMGNDQLGQALEDSDVV  100 (209)
Q Consensus        28 ~~kI~IiGasG~v-G~~la~~L~~--~g~-~~ev~l~D~~~~~~-~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aD~V  100 (209)
                      +|||+|+|| |++ +..++..|+.  .++ .+||+|+|+++.+. ...++.+...  ..++..   ++|++++++|||+|
T Consensus         2 ~~KI~IIGa-G~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~---t~d~~~al~~AD~V   77 (417)
T 1up7_A            2 HMRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI---SDTFEGAVVDAKYV   77 (417)
T ss_dssp             CCEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE---CSSHHHHHTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEE---eCCHHHHhCCCCEE
Confidence            579999999 776 3334445565  666 78999999986221 1223332111  123332   46888999999999


Q ss_pred             EEcCCCCCCCCCChhH--------------------HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHH
Q 028437          101 IIPAGVPRKPGMTRDD--------------------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK  160 (209)
Q Consensus       101 i~~ag~~~~~g~~r~~--------------------~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~  160 (209)
                      |+++|++++++++|.+                    +..+|+++++++++.|+++| ++|+|++|||++    ++|++++
T Consensus        78 iitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvd----i~t~a~~  152 (417)
T 1up7_A           78 IFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSG----HITEFVR  152 (417)
T ss_dssp             EECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHH----HHHHHHH
T ss_pred             EEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHH----HHHHHHH
Confidence            9999998877766532                    35899999999999999999 999999999999    8999999


Q ss_pred             HhCCCCCCcEEEEehhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          161 KAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       161 ~~~~~p~~~vig~~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      +.+  |++|+||+|+.. .|+++++|+.+|+++++|+.++++-|+.
T Consensus       153 k~~--p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~  195 (417)
T 1up7_A          153 NYL--EYEKFIGLCNVP-INFIREIAEMFSARLEDVFLKYYGLNHL  195 (417)
T ss_dssp             HTT--CCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEEETTE
T ss_pred             HhC--CCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEEEEeecce
Confidence            875  788999999653 4999999999999999999999985553

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=99.92  E-value=5.3e-24  Score=181.54  Aligned_cols=171  Identities=32%  Similarity=0.495  Sum_probs=139.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCC-C--CcceeEeecCCchhhhcCCCCE
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN-T--RSEVAGYMGNDQLGQALEDSDV   99 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~-~--~~~v~~~~~~~d~~~a~~~aD~   99 (209)
                      .+++|||+|+|| |.+|..++..|+..|+.++|+++|+++.  .+...++.+.. .  ...+..   +++ .+++++||+
T Consensus         4 ~~~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~-~~~~~~aD~   78 (319)
T 1lld_A            4 TVKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDG---SDD-PEICRDADM   78 (319)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEE---ESC-GGGGTTCSE
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEe---CCC-HHHhCCCCE
Confidence            445689999999 9999999999999998789999999752  22234443322 1  112221   234 468999999


Q ss_pred             EEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ehhhH
Q 028437          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDV  178 (209)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~lds  178 (209)
                      ||++++.++++|++|.+++.+|+++++++++.+++++|++++++++||++    ..+++.++.+++|+++++|. |.+++
T Consensus        79 Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~----~~~~~~~~~~~~~~~~vig~~~~l~~  154 (319)
T 1lld_A           79 VVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATHVAQKLTGLPENQIFGSGTNLDS  154 (319)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH----HHHHHHHHHHTCCTTSEEECTTHHHH
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchH----HHHHHHHHhcCCCHHHEeeccccHhH
Confidence            99999999999999999999999999999999999999999999999999    66667776667999999999 88999


Q ss_pred             HHHHHHHHHHcCCCCCCeeEEEEeccc
Q 028437          179 VRAKTFYAGKANVNVAGLLKLLTHKNL  205 (209)
Q Consensus       179 ~r~~~~la~~l~v~~~~v~~~~i~g~~  205 (209)
                      .|++..+++++++++++++.++ ||++
T Consensus       155 ~r~~~~~a~~~~v~~~~v~~~~-~G~~  180 (319)
T 1lld_A          155 ARLRFLIAQQTGVNVKNVHAYI-AGEH  180 (319)
T ss_dssp             HHHHHHHHHHHTCCGGGEECCE-EBSS
T ss_pred             HHHHHHHHHHhCCCHHHeEEEE-EeCC
Confidence            9999999999999999999855 5554

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.91  E-value=2.8e-24  Score=192.82  Aligned_cols=166  Identities=19%  Similarity=0.140  Sum_probs=125.8

Q ss_pred             CCeEEEEcCCCchHHH--HHHHHHhC-CC-ccEEEEEecCCchhH-HHhhc-----CCCCCcceeEeecCCchhhhcCCC
Q 028437           28 DRKVAVLGAAGGIGQP--LALLMKLN-PL-VSRLALYDIANTPGV-AADVG-----HINTRSEVAGYMGNDQLGQALEDS   97 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~--la~~L~~~-g~-~~ev~l~D~~~~~~~-~~dl~-----~~~~~~~v~~~~~~~d~~~a~~~a   97 (209)
                      +|||+|+|| |.+|+.  ++..|++. ++ ..+|+|+|+++.... ..+..     +...+.++..   ++|++++++||
T Consensus         3 ~~KIaVIGA-GsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~---ttD~~eal~dA   78 (480)
T 1obb_A            3 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEK---TMNLDDVIIDA   78 (480)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHTTC
T ss_pred             CCEEEEECC-CchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEE---ECCHHHHhCCC
Confidence            469999999 998644  56677643 22 349999999852111 11111     1112334443   46888999999


Q ss_pred             CEEEEcCCC------------CCCCCCCh--hH------------HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCc
Q 028437           98 DVVIIPAGV------------PRKPGMTR--DD------------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST  151 (209)
Q Consensus        98 D~Vi~~ag~------------~~~~g~~r--~~------------~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~  151 (209)
                      |+||+++|+            +.++|..+  .+            +..+|+++++++++.|+++||++|+|++|||++  
T Consensus        79 D~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvd--  156 (480)
T 1obb_A           79 DFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIF--  156 (480)
T ss_dssp             SEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHH--
T ss_pred             CEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH--
Confidence            999999986            23344333  22            468999999999999999999999999999999  


Q ss_pred             HHHHHHHHHHhCCCCCCcEEEEehhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          152 VPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       152 ~~i~~~~~~~~~~~p~~~vig~~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                        ++|+++++   +|+.|+||+|+++. ++++++ +.+|+++++|+.++++-|+.
T Consensus       157 --i~t~~~~k---~p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~v~GlNH~  204 (480)
T 1obb_A          157 --EGTTLVTR---TVPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQVAGVNHG  204 (480)
T ss_dssp             --HHHHHHHH---HSCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEEEEEETTE
T ss_pred             --HHHHHHHH---CCCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEEEEeecch
Confidence              88999988   67999999986433 378999 99999999999999998875

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=99.88  E-value=2.6e-22  Score=178.84  Aligned_cols=167  Identities=21%  Similarity=0.269  Sum_probs=129.1

Q ss_pred             CCCeEEEEcCCCch--HHHHHHHHHhCC-CccEEEEEecCCch----hHHHhhcCCCCCcceeEeecCCchhhhcCCCCE
Q 028437           27 PDRKVAVLGAAGGI--GQPLALLMKLNP-LVSRLALYDIANTP----GVAADVGHINTRSEVAGYMGNDQLGQALEDSDV   99 (209)
Q Consensus        27 ~~~kI~IiGasG~v--G~~la~~L~~~g-~~~ev~l~D~~~~~----~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~   99 (209)
                      +.|||+|+|| |++  |..++..|+... +.++|+|+|+++..    ....+.... .+.++.   .++|+++|++|||+
T Consensus         4 ~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~l~~-~~~~I~---~TtD~~eAl~dADf   78 (450)
T 3fef_A            4 DQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGN-GRWRYE---AVSTLKKALSAADI   78 (450)
T ss_dssp             CCEEEEEETT-TCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTT-SCEEEE---EESSHHHHHTTCSE
T ss_pred             CCCEEEEECC-ChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHHHhc-cCCeEE---EECCHHHHhcCCCE
Confidence            3479999999 997  567888777643 33499999998521    111111111 222333   35689999999999


Q ss_pred             EEEcCCC------------CCCCCCChh--H--------HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHH
Q 028437          100 VIIPAGV------------PRKPGMTRD--D--------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE  157 (209)
Q Consensus       100 Vi~~ag~------------~~~~g~~r~--~--------~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~  157 (209)
                      ||+++.+            |.++|+.+.  |        +..+|+++++++++.++++||++|+|++|||++    ++|+
T Consensus        79 VI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvd----i~t~  154 (450)
T 3fef_A           79 VIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMS----VCTR  154 (450)
T ss_dssp             EEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH----HHHH
T ss_pred             EEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchH----HHHH
Confidence            9999863            667776544  3        345999999999999999999999999999999    8899


Q ss_pred             HHHHhCCCCCCcEEEEehhhHHHHHHHHHHHc----C---CCCCCeeEEEEeccc
Q 028437          158 VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKA----N---VNVAGLLKLLTHKNL  205 (209)
Q Consensus       158 ~~~~~~~~p~~~vig~~~lds~r~~~~la~~l----~---v~~~~v~~~~i~g~~  205 (209)
                      ++++.  +|+.|+||+|+.. .++++.+|+.|    |   +++++|+..+.+=|+
T Consensus       155 ~~~k~--~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH  206 (450)
T 3fef_A          155 VLYKV--FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINH  206 (450)
T ss_dssp             HHHHH--CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETT
T ss_pred             HHHHH--CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecC
Confidence            98886  7899999999865 67899999999    5   779999988886576

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.87  E-value=3.5e-22  Score=179.52  Aligned_cols=165  Identities=16%  Similarity=0.130  Sum_probs=121.2

Q ss_pred             CeEEEEcCCCchHHH--HHHHHHhCC----CccEEEEEecCCc--hhHHHhhcCC----CCCcceeEeecCCchhhhcCC
Q 028437           29 RKVAVLGAAGGIGQP--LALLMKLNP----LVSRLALYDIANT--PGVAADVGHI----NTRSEVAGYMGNDQLGQALED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~--la~~L~~~g----~~~ev~l~D~~~~--~~~~~dl~~~----~~~~~v~~~~~~~d~~~a~~~   96 (209)
                      |||+|||| |++|.+  ++..++...    ..++|+|+|+++.  +....++.+.    ..+.++..   ++|+++|++|
T Consensus         1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~---t~d~~eAl~g   76 (477)
T 3u95_A            1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVK---TESLDEAIEG   76 (477)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEE---ESCHHHHHTT
T ss_pred             CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEE---eCCHHHHhCC
Confidence            69999999 999876  444455432    2459999999862  2222222222    12334443   5688999999


Q ss_pred             CCEEEEcCCCCC-------------------CCCCChhHH---------------HHHHHHHHHHHHHHHHhhCCCeEEE
Q 028437           97 SDVVIIPAGVPR-------------------KPGMTRDDL---------------FNINAGIVKDLCSAIAKYCPNAIVN  142 (209)
Q Consensus        97 aD~Vi~~ag~~~-------------------~~g~~r~~~---------------~~~N~~~~~~i~~~i~~~~p~~~vi  142 (209)
                      ||+||+++|..+                   ++|+++...               ...|++++.++++.|+++||++|+|
T Consensus        77 AD~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~i  156 (477)
T 3u95_A           77 ADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLM  156 (477)
T ss_dssp             CSEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             CCEEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEE
Confidence            999999997532                   444433322               1358999999999999999999999


Q ss_pred             EecCCCCCcHHHHHHHHHHhCCCCCCcEEEEehhhHHHHHHHHHHHcCCCCCCeeEEEEecccc
Q 028437          143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAGLLKLLTHKNLV  206 (209)
Q Consensus       143 v~snP~~~~~~i~~~~~~~~~~~p~~~vig~~~lds~r~~~~la~~l~v~~~~v~~~~i~g~~~  206 (209)
                      ++|||++    ++|+++++.+   ..|++|+|+-...  ...+++.||+++++|+..+.+=|+.
T Consensus       157 n~tNP~~----i~t~a~~~~~---~~k~vGlC~~~~~--~~~~~~~Lg~~~~~v~~~~~GlNH~  211 (477)
T 3u95_A          157 QTANPVF----EITQAVRRWT---GANIIGFCHGVAG--VYEVFERLGLDPEEVDWQVAGVNHG  211 (477)
T ss_dssp             ECSSCHH----HHHHHHHHHH---CCCEEEECCGGGH--HHHHHHHTTCCGGGEEEEEEEETTE
T ss_pred             EecChHH----HHHHHHHHhC---CCCeEEECCCHHH--HHHHHHHhCCCHHHcEEEEeecCCC
Confidence            9999999    8898988865   4689999974433  3457788999999999999887764

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=99.20  E-value=5.4e-11  Score=100.67  Aligned_cols=115  Identities=18%  Similarity=0.148  Sum_probs=73.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhcCCCCEEEEcC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ..+|||+|+||+|++|++++..|++.|+  +|+++++++...  .++.+.... .+. ++...++++++++++|+||++|
T Consensus        11 ~~~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~l~~~~~~-~~~~Dl~d~~~~~~~~~~~d~vih~a   85 (342)
T 2x4g_A           11 GAHVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPSSQI--QRLAYLEPE-CRVAEMLDHAGLERALRGLDGVIFSA   85 (342)
T ss_dssp             -CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTTSCG--GGGGGGCCE-EEECCTTCHHHHHHHTTTCSEEEEC-
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecChHhh--hhhccCCeE-EEEecCCCHHHHHHHHcCCCEEEECC
Confidence            3447999999999999999999999998  999999975321  112211110 000 0111224667889999999999


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +.......+..+++..|+..+.++++++.+... .++|++|.
T Consensus        86 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~~v~~SS  126 (342)
T 2x4g_A           86 GYYPSRPRRWQEEVASALGQTNPFYAACLQARV-PRILYVGS  126 (342)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHHTC-SCEEEECC
T ss_pred             ccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CeEEEECC
Confidence            865322234556788999999999999998753 35666664

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.19  E-value=1.7e-11  Score=98.16  Aligned_cols=109  Identities=12%  Similarity=0.074  Sum_probs=75.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee----cCCchhhhcCCCCEE
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVV  100 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aD~V  100 (209)
                      |..||||+|+||+|++|++++..|++.|+  +|+++++++....  ++.     ..+..+.    ..++++++++++|+|
T Consensus         1 M~~m~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~v   71 (227)
T 3dhn_A            1 MEKVKKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHPEKIK--IEN-----EHLKVKKADVSSLDEVCEVCKGADAV   71 (227)
T ss_dssp             --CCCEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCGGGCC--CCC-----TTEEEECCCTTCHHHHHHHHTTCSEE
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCcccch--hcc-----CceEEEEecCCCHHHHHHHhcCCCEE
Confidence            34568999999999999999999999998  9999999753111  111     0111111    123467889999999


Q ss_pred             EEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      |+++|....    ..+++..|+..+.++++.+.+... .++|++|..
T Consensus        72 i~~a~~~~~----~~~~~~~n~~~~~~l~~~~~~~~~-~~~v~~Ss~  113 (227)
T 3dhn_A           72 ISAFNPGWN----NPDIYDETIKVYLTIIDGVKKAGV-NRFLMVGGA  113 (227)
T ss_dssp             EECCCC----------CCSHHHHHHHHHHHHHHHTTC-SEEEEECCS
T ss_pred             EEeCcCCCC----ChhHHHHHHHHHHHHHHHHHHhCC-CEEEEeCCh
Confidence            999976521    123567799999999999998653 367777643

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=99.15  E-value=1.3e-10  Score=98.68  Aligned_cols=109  Identities=15%  Similarity=0.148  Sum_probs=77.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ++|+|+||||+|++|++++..|++.|+  +|+++++++..... .....    +   +...++++++++++|+||++|+.
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~-~~~~~----D---l~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSGTGG-EEVVG----S---LEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSCCSSCC-SEEES----C---TTCHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCCCc-cEEec----C---cCCHHHHHHHHhCCCEEEECCcc
Confidence            346999999999999999999999998  99999997532000 00000    1   11123467788999999999987


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      .........+++..|+..+.++++++.+... .++|++|.
T Consensus        88 ~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~-~~~V~~SS  126 (347)
T 4id9_A           88 MSWAPADRDRMFAVNVEGTRRLLDAASAAGV-RRFVFASS  126 (347)
T ss_dssp             CCSSGGGHHHHHHHHTHHHHHHHHHHHHTTC-SEEEEEEE
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHcCC-CeEEEECC
Confidence            6433333467889999999999999988653 35666654

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=99.15  E-value=4.6e-10  Score=94.69  Aligned_cols=116  Identities=11%  Similarity=-0.011  Sum_probs=79.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-H-HhhcCCCCCcceeE-----eecCCchhhhcCCCCE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-A-ADVGHINTRSEVAG-----YMGNDQLGQALEDSDV   99 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-~-~dl~~~~~~~~v~~-----~~~~~d~~~a~~~aD~   99 (209)
                      +.++|+||||+|++|++++..|++.|+  +|++++++..... . ..+.... ...+..     +....+++++++++|+
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d~   86 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCCE
Confidence            346999999999999999999999998  9999999642211 1 1111000 001111     1123346677889999


Q ss_pred             EEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |||+|+.... ..+..+++..|+..+.++++++.+.....++|++|.
T Consensus        87 vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS  132 (342)
T 1y1p_A           87 VAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS  132 (342)
T ss_dssp             EEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred             EEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence            9999987542 245667889999999999999985433457777764

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=99.14  E-value=7.6e-11  Score=100.13  Aligned_cols=111  Identities=15%  Similarity=0.090  Sum_probs=77.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC--CCccEEEEEecCCc---hhHHHhhcCCCCCcceeEee----cCCchhhhcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM----GNDQLGQALEDS   97 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~--g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~a   97 (209)
                      .||+|+||||+|++|++++..|++.  |+  +|+++|+...   .....++...    .+..+.    ...+++++++++
T Consensus         3 ~m~~vlVTGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~Dl~d~~~~~~~~~~~   76 (348)
T 1oc2_A            3 QFKNIIVTGGAGFIGSNFVHYVYNNHPDV--HVTVLDKLTYAGNKANLEAILGD----RVELVVGDIADAELVDKLAAKA   76 (348)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTC--EEEEEECCCTTCCGGGTGGGCSS----SEEEEECCTTCHHHHHHHHTTC
T ss_pred             cCcEEEEeCCccHHHHHHHHHHHHhCCCC--EEEEEeCCCCCCChhHHhhhccC----CeEEEECCCCCHHHHHHHhhcC
Confidence            3579999999999999999999988  77  9999998641   1111222211    122111    112456788999


Q ss_pred             CEEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        98 D~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      |+|||+||.....  ..+..+++..|+..+.++++++.+...  ++|++|
T Consensus        77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~S  124 (348)
T 1oc2_A           77 DAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVS  124 (348)
T ss_dssp             SEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             CEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEec
Confidence            9999999865311  123456788999999999999998753  777776

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=99.14  E-value=2.1e-10  Score=98.33  Aligned_cols=115  Identities=15%  Similarity=0.129  Sum_probs=78.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHh--CCCccEEEEEecCCch-----------hHHHhhcCCCCCccee-EeecCCchhh
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKL--NPLVSRLALYDIANTP-----------GVAADVGHINTRSEVA-GYMGNDQLGQ   92 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~--~g~~~ev~l~D~~~~~-----------~~~~dl~~~~~~~~v~-~~~~~~d~~~   92 (209)
                      .+|+|+||||+|++|++++..|++  .|+  +|+++|+....           .....+...... .+. ++...+++++
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dl~d~~~~~~   85 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGE-VIAADINNPLDLRR   85 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECCCCC-------CCCCCCGGGGTTCCSE-EEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECCCccccccccchhhhhhhhhccccCce-EEECCCCCHHHHHH
Confidence            457999999999999999999999  898  99999985420           001111111100 010 0111123455


Q ss_pred             h-cCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           93 A-LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        93 a-~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      + ..++|+||++||.......+..+.+..|+..+.++++.+++...  ++|++|.
T Consensus        86 ~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~--~~V~~SS  138 (362)
T 3sxp_A           86 LEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKA--KVIYASS  138 (362)
T ss_dssp             HTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEEE
T ss_pred             hhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEeCc
Confidence            5 78999999999965433355677889999999999999987653  3666654

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.13  E-value=2.9e-10  Score=90.64  Aligned_cols=105  Identities=20%  Similarity=0.152  Sum_probs=73.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      |||+|+||+|++|++++..|++.|+  +|+++++++..  ..++.........-++... +. ++++++|+||+++|...
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~--~~~~~~~~~~~~~~D~~d~-~~-~~~~~~d~vi~~ag~~~   74 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDPQK--AADRLGATVATLVKEPLVL-TE-ADLDSVDAVVDALSVPW   74 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHTCTTSEEEECCGGGC-CH-HHHTTCSEEEECCCCCT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEecccc--cccccCCCceEEecccccc-cH-hhcccCCEEEECCccCC
Confidence            6899999999999999999999998  99999997532  2222222111000011111 22 67899999999998763


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       109 ~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      .+.     ....|+..++++++.+++..  .+++++|.
T Consensus        75 ~~~-----~~~~n~~~~~~l~~a~~~~~--~~~v~~SS  105 (224)
T 3h2s_A           75 GSG-----RGYLHLDFATHLVSLLRNSD--TLAVFILG  105 (224)
T ss_dssp             TSS-----CTHHHHHHHHHHHHTCTTCC--CEEEEECC
T ss_pred             Ccc-----hhhHHHHHHHHHHHHHHHcC--CcEEEEec
Confidence            222     13568999999999998765  67777763

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=99.12  E-value=5.9e-10  Score=89.97  Aligned_cols=112  Identities=16%  Similarity=0.106  Sum_probs=80.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      .|||+|+||+|++|++++..|++.|+  +|+++++++....  ++...... .+....-++++.++++++|+||++||..
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~--~~~~~~~~-~~~~~Dl~~~~~~~~~~~D~vi~~ag~~   95 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGP--ELRERGAS-DIVVANLEEDFSHAFASIDAVVFAAGSG   95 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHH--HHHHTTCS-EEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHhCCCc-eEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence            46999999999999999999999999  9999999753221  12111110 0000000145678899999999999875


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      .  ..+..+.+..|+....++++++++.. ..++|++|.-
T Consensus        96 ~--~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS~  132 (236)
T 3e8x_A           96 P--HTGADKTILIDLWGAIKTIQEAEKRG-IKRFIMVSSV  132 (236)
T ss_dssp             T--TSCHHHHHHTTTHHHHHHHHHHHHHT-CCEEEEECCT
T ss_pred             C--CCCccccchhhHHHHHHHHHHHHHcC-CCEEEEEecC
Confidence            3  23466778889999999999998875 3467777653

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=99.12  E-value=3.5e-10  Score=94.86  Aligned_cols=107  Identities=20%  Similarity=0.166  Sum_probs=76.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      +|||+|+||+|++|++++..|++.|+  +|+++++++....   +....  ....++. .++++++++++|+||++|+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~---~~~~~--~~~~Dl~-~~~~~~~~~~~d~Vih~a~~~   73 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSIGNKA---INDYE--YRVSDYT-LEDLINQLNDVDAVVHLAATR   73 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCC--------CCE--EEECCCC-HHHHHHHTTTCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCCccc---CCceE--EEEcccc-HHHHHHhhcCCCEEEEccccC
Confidence            36999999999999999999999999  9999999732111   22111  0000111 235678899999999999875


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ...  +..+.+..|+..++++++++++.... ++|++|
T Consensus        74 ~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~-r~v~~S  108 (311)
T 3m2p_A           74 GSQ--GKISEFHDNEILTQNLYDACYENNIS-NIVYAS  108 (311)
T ss_dssp             CSS--SCGGGTHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             CCC--ChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            433  44567789999999999999987543 566665

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.12  E-value=4.7e-10  Score=94.96  Aligned_cols=114  Identities=11%  Similarity=0.076  Sum_probs=75.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch----hHHHhhcCCCCCcceeE----eecCCchhhhcCCCCE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP----GVAADVGHINTRSEVAG----YMGNDQLGQALEDSDV   99 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~----~~~~dl~~~~~~~~v~~----~~~~~d~~~a~~~aD~   99 (209)
                      +++|+||||+||+|++++..|++.|+  +|++++++...    ....++....   .+..    +....+++++++++|+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~Dl~d~~~~~~~~~~~D~   83 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQELG---DLKIFRADLTDELSFEAPIAGCDF   83 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGGGS---CEEEEECCTTTSSSSHHHHTTCSE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCCCC---cEEEEecCCCChHHHHHHHcCCCE
Confidence            36899999999999999999999999  99988776421    1111222110   1111    1123456778999999


Q ss_pred             EEEcCCCCCCCCCC-hhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          100 VIIPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       100 Vi~~ag~~~~~g~~-r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |||+|+.......+ ..+++..|+..+.++++++.+.....++|++|.
T Consensus        84 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS  131 (338)
T 2rh8_A           84 VFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSS  131 (338)
T ss_dssp             EEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred             EEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEec
Confidence            99999854221122 234778899999999999987642357777764

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=99.12  E-value=7.6e-10  Score=94.04  Aligned_cols=134  Identities=12%  Similarity=0.006  Sum_probs=76.2

Q ss_pred             hhhhhhhhccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcc
Q 028437            3 SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSE   80 (209)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~   80 (209)
                      +|+-..-|.-.+|.+-.++++++ ++|+|+|+||+|++|++++..|++.|+  +|++++++..  .....++..   ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~   76 (343)
T 2b69_A            3 SSHHHHHHSSGRENLYFQGHMEK-DRKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRKRNVEHWIG---HEN   76 (343)
T ss_dssp             -------------------------CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGGGTGGGTT---CTT
T ss_pred             ccccccccccccccccccccccc-CCCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCCccchhhhhhhcc---CCc
Confidence            44444444456777777777765 457999999999999999999999998  9999998632  111111211   112


Q ss_pred             eeEeecCCchhhhcCCCCEEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           81 VAGYMGNDQLGQALEDSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        81 v~~~~~~~d~~~a~~~aD~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +..+.. +-...++.++|+||++|+.....  ..+..+.+..|+..+.++++++.+...  ++|++|
T Consensus        77 ~~~~~~-D~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  140 (343)
T 2b69_A           77 FELINH-DVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLAS  140 (343)
T ss_dssp             EEEEEC-CTTSCCCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             eEEEeC-ccCChhhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEC
Confidence            332221 11234578999999999865311  124556788999999999999988753  677765

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.11  E-value=6.9e-10  Score=93.97  Aligned_cols=119  Identities=12%  Similarity=0.032  Sum_probs=78.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCC-CcceeE----eecCCchhhhcCCCCEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINT-RSEVAG----YMGNDQLGQALEDSDVV  100 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~-~~~v~~----~~~~~d~~~a~~~aD~V  100 (209)
                      ++++|+||||+||+|++++..|++.|+  +|+++++++... ...++..... ...+..    +...++++++++++|+|
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   81 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGV   81 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEE
Confidence            346899999999999999999999999  999888864211 1111111100 001211    11234567889999999


Q ss_pred             EEcCCCCCCCCCCh-hHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          101 IIPAGVPRKPGMTR-DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       101 i~~ag~~~~~g~~r-~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ||+|+.......+. .+++..|+..+.++++++.+.....++|++|..
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~  129 (337)
T 2c29_D           82 FHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSA  129 (337)
T ss_dssp             EECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCG
T ss_pred             EEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeH
Confidence            99998642222222 357889999999999999887534577777643

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=99.10  E-value=1.7e-10  Score=97.60  Aligned_cols=114  Identities=18%  Similarity=0.163  Sum_probs=78.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC---chhHHHhhcCCCCCcceeEee----cCCchhhhcCC--CC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM----GNDQLGQALED--SD   98 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~---~~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~--aD   98 (209)
                      ||+|+||||+|++|++++..|++.|+  +|+++|+..   ......++....   .+..+.    ..+++++++++  +|
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~---~~~~~~~Dl~d~~~~~~~~~~~~~d   75 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSLG---NFEFVHGDIRNKNDVTRLITKYMPD   75 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTTC---CCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCCCccCchhhhhhhccCC---ceEEEEcCCCCHHHHHHHHhccCCC
Confidence            46899999999999999999999998  999999742   111122332211   111111    11235667777  99


Q ss_pred             EEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        99 ~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +||++||.....  ..+..+++..|+..+.++++++.+.....++|++|.
T Consensus        76 ~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS  125 (347)
T 1orr_A           76 SCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSST  125 (347)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             EEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecc
Confidence            999999865311  123456788999999999999998876557777763

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=99.09  E-value=1e-09  Score=91.68  Aligned_cols=111  Identities=18%  Similarity=0.103  Sum_probs=75.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      |||+||||+|++|++++..|++.|+  +|++++++.....  +...........++.... +.+++++ |+|||+|+.+.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~Dl~d~~-~~~~~~~-d~vih~A~~~~   74 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLSSGRR--EFVNPSAELHVRDLKDYS-WGAGIKG-DVVFHFAANPE   74 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSCCG--GGSCTTSEEECCCTTSTT-TTTTCCC-SEEEECCSSCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCch--hhcCCCceEEECccccHH-HHhhcCC-CEEEECCCCCC
Confidence            6899999999999999999999999  9999998642111  111111100000011122 5667777 99999998653


Q ss_pred             CC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          109 KP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       109 ~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ..  ..+....+..|+..+.++++++++.... ++|++|.
T Consensus        75 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  113 (312)
T 3ko8_A           75 VRLSTTEPIVHFNENVVATFNVLEWARQTGVR-TVVFASS  113 (312)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEE
T ss_pred             chhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeCc
Confidence            21  2345667889999999999999887533 5666653

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=99.09  E-value=4.5e-10  Score=95.36  Aligned_cols=119  Identities=16%  Similarity=0.128  Sum_probs=76.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee----cCCchhhhcCC--CCE
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALED--SDV   99 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~--aD~   99 (209)
                      .++|||+||||+|++|++++..|++.|+.-+|+..|+.........+........+..+.    ..+++++++++  +|+
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~  101 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQV  101 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCE
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCE
Confidence            345799999999999999999999998322888888754212222222221111222221    12235667776  999


Q ss_pred             EEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          100 VIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       100 Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ||++|+.....  ..+..+++..|+..+.++++++.+... .++|++|
T Consensus       102 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~-~~~v~~S  148 (346)
T 4egb_A          102 IVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPH-IKLVQVS  148 (346)
T ss_dssp             EEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTT-SEEEEEE
T ss_pred             EEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCC-CEEEEeC
Confidence            99999875322  134556789999999999999998753 4566665

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=99.07  E-value=3.1e-10  Score=96.53  Aligned_cols=116  Identities=15%  Similarity=0.010  Sum_probs=79.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCC---CcceeEee----cCCchhhhcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT---RSEVAGYM----GNDQLGQALEDS   97 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~---~~~v~~~~----~~~d~~~a~~~a   97 (209)
                      .+|+|+|+||+|++|++++..|++.|+  +|+++++...  .....++.....   ...+..+.    ..++++++++++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            357999999999999999999999998  9999999642  112222221100   00111111    123467788999


Q ss_pred             CEEEEcCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           98 DVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        98 D~Vi~~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      |+||++|+....+.  .+..+++..|+..+.++++++.+.... ++|++|
T Consensus       102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~S  150 (351)
T 3ruf_A          102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-SFTYAA  150 (351)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            99999998642111  234567889999999999999887533 566665

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=99.07  E-value=7.1e-10  Score=92.54  Aligned_cols=100  Identities=19%  Similarity=0.218  Sum_probs=71.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      |||+|||||||||++|+..|+++|+  +|+.+.|++...            .+..   .....++++++|.||++|+.+-
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~~~~------------~~~~---~~~~~~~l~~~d~vihla~~~i   63 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKPGPG------------RITW---DELAASGLPSCDAAVNLAGENI   63 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTT------------EEEH---HHHHHHCCCSCSEEEECCCCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCcC------------eeec---chhhHhhccCCCEEEEeccCcc
Confidence            7999999999999999999999999  999998864211            1111   0012466889999999987542


Q ss_pred             CC-----C-CChhHHHHHHHHHHHHHHHHHHhhCC-CeEEEEec
Q 028437          109 KP-----G-MTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMIS  145 (209)
Q Consensus       109 ~~-----g-~~r~~~~~~N~~~~~~i~~~i~~~~p-~~~viv~s  145 (209)
                      ..     . ....++...|+..++++++.+++... ..+++..|
T Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~S  107 (298)
T 4b4o_A           64 LNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVT  107 (298)
T ss_dssp             SCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred             cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEe
Confidence            11     1 12345678899999999999987653 34455443

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=99.06  E-value=9.7e-10  Score=93.87  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=77.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC-----CCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-----DSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g-~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~-----~aD~Vi~  102 (209)
                      |+|+|+||+|++|++++..|++.| +  +|+++++++.......+.......+   +...+.++++++     ++|+||+
T Consensus        47 ~~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~d~Vih  121 (357)
T 2x6t_A           47 RMIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADY---MDKEDFLIQIMAGEEFGDVEAIFH  121 (357)
T ss_dssp             -CEEEETTTSHHHHHHHHHHHHTTCC--CEEEEECCSSGGGGGGTTTSCCSEE---EEHHHHHHHHHTTCCCSSCCEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCc--EEEEEecCCCcchhhcccCceEeee---cCcHHHHHHHHhhcccCCCCEEEE
Confidence            689999999999999999999999 7  9999998653211112221111111   111223455665     5999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +|+.......+..+++..|+..+.++++++.+...  ++|++|
T Consensus       122 ~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~S  162 (357)
T 2x6t_A          122 EGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  162 (357)
T ss_dssp             CCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             CCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            99876433345667889999999999999998755  666665

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.06  E-value=8.5e-10  Score=87.51  Aligned_cols=103  Identities=14%  Similarity=0.139  Sum_probs=72.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeE-eecCCchhhhcCCCCEEEEcCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      |||+|+||+|++|++++..|++.|+  +|+++++++...  .++. .... .+.. +... +. ++++++|+||+++|.+
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~--~~~~-~~~~-~~~~D~~d~-~~-~~~~~~d~vi~~ag~~   72 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNAGKI--TQTH-KDIN-ILQKDIFDL-TL-SDLSDQNVVVDAYGIS   72 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCSHHH--HHHC-SSSE-EEECCGGGC-CH-HHHTTCSEEEECCCSS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCchhh--hhcc-CCCe-EEeccccCh-hh-hhhcCCCEEEECCcCC
Confidence            6999999999999999999999998  999999975322  2222 1111 0110 1111 22 7889999999999875


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ...       ...|+..++++++.+++.. ..+++++|..
T Consensus        73 ~~~-------~~~~~~~~~~l~~a~~~~~-~~~~v~~SS~  104 (221)
T 3ew7_A           73 PDE-------AEKHVTSLDHLISVLNGTV-SPRLLVVGGA  104 (221)
T ss_dssp             TTT-------TTSHHHHHHHHHHHHCSCC-SSEEEEECCC
T ss_pred             ccc-------cchHHHHHHHHHHHHHhcC-CceEEEEecc
Confidence            321       3458889999999998753 4467777654

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=99.05  E-value=8.9e-10  Score=93.03  Aligned_cols=115  Identities=14%  Similarity=0.068  Sum_probs=77.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC--CccEEEEEecCCchhHHHhhcCCCCCcceeEee----cCCchhhhcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g--~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aD~Vi~  102 (209)
                      |||+||||+|++|++++..|++.|  +  +|+++|+.........+........+..+.    ..+++++++.++|+|||
T Consensus         4 m~vlVTGatG~iG~~l~~~L~~~g~~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   81 (336)
T 2hun_A            4 MKLLVTGGMGFIGSNFIRYILEKHPDW--EVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVH   81 (336)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCTTC--EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred             CeEEEECCCchHHHHHHHHHHHhCCCC--EEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEE
Confidence            689999999999999999999886  6  999999853111111121111011222211    11235566789999999


Q ss_pred             cCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       103 ~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +||.....  ..+..+++..|+..+.++++++.+.....++|++|
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  126 (336)
T 2hun_A           82 LAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVS  126 (336)
T ss_dssp             CCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            99865311  12345678899999999999999885445777776

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=99.04  E-value=1.2e-09  Score=94.49  Aligned_cols=114  Identities=14%  Similarity=-0.015  Sum_probs=78.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ++|+|+|+||+|++|++++..|++.|+  +|+++++++.....  ....... .+. ++...++++++++++|+||++|+
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~~v~-~~~~Dl~d~~~~~~~~~~~d~Vih~A~  102 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMT--EDMFCDE-FHLVDLRVMENCLKVTEGVDHVFNLAA  102 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSC--GGGTCSE-EEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCCccchh--hccCCce-EEECCCCCHHHHHHHhCCCCEEEECce
Confidence            457999999999999999999999998  99999996421110  1111100 000 01111246678899999999998


Q ss_pred             CCCCC---CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          106 VPRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       106 ~~~~~---g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      .....   ..+..+++..|+..+.++++++.+... .++|++|.
T Consensus       103 ~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~-~~~V~~SS  145 (379)
T 2c5a_A          103 DMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGI-KRFFYASS  145 (379)
T ss_dssp             CCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTC-SEEEEEEE
T ss_pred             ecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEEee
Confidence            65321   234567788999999999999987643 35666653

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.04  E-value=5.9e-10  Score=94.34  Aligned_cols=118  Identities=13%  Similarity=0.062  Sum_probs=78.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhc---CCCCCccee-EeecCCchhhhcC--C
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVG---HINTRSEVA-GYMGNDQLGQALE--D   96 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~---~~~~~~~v~-~~~~~~d~~~a~~--~   96 (209)
                      |..+|+|+||||+|++|++++..|++.|+  +|++++++..  .....++.   ..... .+. ++...++++++++  +
T Consensus         2 M~~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~Dl~d~~~~~~~~~~~~   78 (341)
T 3enk_A            2 MSTKGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLVNSKREAIARIEKITGKTPA-FHETDVSDERALARIFDAHP   78 (341)
T ss_dssp             CCSSCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSSCTHHHHHHHHHHSCCCE-EECCCTTCHHHHHHHHHHSC
T ss_pred             CCCCcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCCcchHHHHHHHHhhcCCCce-EEEeecCCHHHHHHHHhccC
Confidence            44567999999999999999999999999  9999998642  11111221   11110 000 0111224556666  8


Q ss_pred             CCEEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +|+||++||.....  .....+.+..|+..+.++++.+++... .++|++|.
T Consensus        79 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~iv~~SS  129 (341)
T 3enk_A           79 ITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAV-KRIVFSSS  129 (341)
T ss_dssp             CCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEEEE
T ss_pred             CcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCC-CEEEEEec
Confidence            99999999875311  123446778899999999999988653 35666653

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.04  E-value=2.2e-10  Score=97.82  Aligned_cols=122  Identities=15%  Similarity=0.193  Sum_probs=85.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hh------HHHhhcCCC-----CC--cceeEeecCCchhh
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG------VAADVGHIN-----TR--SEVAGYMGNDQLGQ   92 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~------~~~dl~~~~-----~~--~~v~~~~~~~d~~~   92 (209)
                      .||+|+|| |.+|+.++..++..|+  +|+++|.++.   .+      ....+....     ..  ..+..+..++|+++
T Consensus         7 ~~VaViGa-G~MG~giA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~   83 (319)
T 3ado_A            7 GDVLIVGS-GLVGRSWAMLFASGGF--RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAE   83 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHH
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHh
Confidence            59999999 9999999999999999  9999999752   11      011111110     00  01111222457889


Q ss_pred             hcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE
Q 028437           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF  171 (209)
Q Consensus        93 a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p-~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vi  171 (209)
                      ++++||+|+.++              .+|+++.+++.+.+.++++ ++  |++||.+...   ++++....  -.|+|++
T Consensus        84 a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~a--IlaSNTSsl~---is~ia~~~--~~p~r~i  142 (319)
T 3ado_A           84 AVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRV--VLSSSSSCLL---PSKLFTGL--AHVKQCI  142 (319)
T ss_dssp             HTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSS--EEEECCSSCC---HHHHHTTC--TTGGGEE
T ss_pred             HhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhcc--eeehhhhhcc---chhhhhhc--cCCCcEE
Confidence            999999999985              3578999999999999985 55  4699998863   34454333  2467888


Q ss_pred             EEe
Q 028437          172 GVT  174 (209)
Q Consensus       172 g~~  174 (209)
                      |++
T Consensus       143 g~H  145 (319)
T 3ado_A          143 VAH  145 (319)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            873

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=99.04  E-value=1.9e-09  Score=89.83  Aligned_cols=110  Identities=14%  Similarity=0.073  Sum_probs=77.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCC-CccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCC-----CCEEEEc
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED-----SDVVIIP  103 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g-~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~-----aD~Vi~~  103 (209)
                      ||+|+||+|++|++++..|++.| +  +|+++++.+.......+.......++   ...+.+++++++     +|+||++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~~~~~~d~vi~~   75 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYM---DKEDFLIQIMAGEEFGDVEAIFHE   75 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGGGHHHHTSCCSEEE---EHHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc--EEEEEccCCCCchhhhcCcceecccc---ccHHHHHHHHhccccCCCcEEEEC
Confidence            58999999999999999999999 7  99999986532111122221111111   112235566664     9999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |+.......+..+++..|+..+.++++++.+...  ++|++|.
T Consensus        76 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS  116 (310)
T 1eq2_A           76 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASS  116 (310)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEE
T ss_pred             cccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEee
Confidence            9876443345667889999999999999998765  6666653

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=99.04  E-value=1.1e-09  Score=98.89  Aligned_cols=105  Identities=15%  Similarity=0.111  Sum_probs=74.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      +|||+|+||+|++|++++..|++.|+  +|++++++.....  .+ ..+    +     .+.+.++++++|+||++|+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~~--~v-~~d----~-----~~~~~~~l~~~D~Vih~A~~~  212 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKPG--KR-FWD----P-----LNPASDLLDGADVLVHLAGEP  212 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCTT--CE-ECC----T-----TSCCTTTTTTCSEEEECCCC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCcc--ce-eec----c-----cchhHHhcCCCCEEEECCCCc
Confidence            68999999999999999999999999  9999999753211  00 000    0     112357789999999999875


Q ss_pred             CCC---CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          108 RKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       108 ~~~---g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ...   .....+++..|+..+.++++.+.+.....++|++|.
T Consensus       213 ~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS  254 (516)
T 3oh8_A          213 IFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASA  254 (516)
T ss_dssp             ----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence            321   123456778899999999998554444446776663

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.03  E-value=6.3e-10  Score=93.92  Aligned_cols=115  Identities=17%  Similarity=0.035  Sum_probs=77.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch---hHHHhhcCCCCCcceeEee----cCCchhhhcCC--C
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYM----GNDQLGQALED--S   97 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~---~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~--a   97 (209)
                      ++|||+||||+|++|++++..|++.|+  +|+++++++..   .....+...   ..+..+.    ..+++++++++  .
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~   87 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIE---GDIQYEDGDMADACSVQRAVIKAQP   87 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCG---GGEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCCccccccchhhcccc---CceEEEECCCCCHHHHHHHHHHcCC
Confidence            457999999999999999999999998  99999996422   112222111   1122211    11234556665  6


Q ss_pred             CEEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        98 D~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |+||++||.....  ..+..+++..|+..+.++++++.+.....++|++|.
T Consensus        88 d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS  138 (335)
T 1rpn_A           88 QEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAST  138 (335)
T ss_dssp             SEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             CEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            9999999865321  234566788999999999999998754356777653

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.03  E-value=3.1e-09  Score=99.87  Aligned_cols=149  Identities=13%  Similarity=0.175  Sum_probs=99.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhH----------HHh--hcCCC-CCcceeEeecCCch
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV----------AAD--VGHIN-TRSEVAGYMGNDQL   90 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~----------~~d--l~~~~-~~~~v~~~~~~~d~   90 (209)
                      +..||+|+|| |.+|+.++..++..|+  +|+++|+++.   .+.          ...  +.... ....+..   +++ 
T Consensus       315 ~i~~v~ViGa-G~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~---~~~-  387 (742)
T 3zwc_A          315 PVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSS-  387 (742)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE---ESC-
T ss_pred             cccEEEEEcc-cHHHHHHHHHHHhCCC--chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc---cCc-
Confidence            4469999999 9999999999999999  9999999751   110          011  11111 1112222   345 


Q ss_pred             hhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 028437           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK  169 (209)
Q Consensus        91 ~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p-~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~  169 (209)
                      .+++++||+||.++              .+|+++.+++.+.++++++ ++  |++||.+..   .++++....  -.|+|
T Consensus       388 ~~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~a--IlASNTSsl---~i~~ia~~~--~~p~r  446 (742)
T 3zwc_A          388 TKELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGA--FLCTNTSAL---NVDDIASST--DRPQL  446 (742)
T ss_dssp             GGGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTC--EEEECCSSS---CHHHHHTTS--SCGGG
T ss_pred             HHHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCc--eEEecCCcC---ChHHHHhhc--CCccc
Confidence            46799999999995              3578999999999999985 55  469999886   344444322  24678


Q ss_pred             EEEEeh-------------------hhHHHHHHHHHHHcCCCCCCeeEEEEecccccc
Q 028437          170 LFGVTT-------------------LDVVRAKTFYAGKANVNVAGLLKLLTHKNLVFI  208 (209)
Q Consensus       170 vig~~~-------------------lds~r~~~~la~~l~v~~~~v~~~~i~g~~~~~  208 (209)
                      ++|++.                   -++...-..+++.+|..|     +++-...+|+
T Consensus       447 ~ig~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~p-----V~vkd~pGFi  499 (742)
T 3zwc_A          447 VIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIG-----VVVGNCYGFV  499 (742)
T ss_dssp             EEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEE-----EECCCSTTTT
T ss_pred             cccccccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCC-----cccCCCCCcc
Confidence            888741                   233333455778888655     3335555665

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=99.01  E-value=2.2e-10  Score=98.35  Aligned_cols=110  Identities=15%  Similarity=0.169  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEecCCchhHHHhhcCCCCCcceeEee-----cCCchhhhcCCCCEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-----GNDQLGQALEDSDVVI  101 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~-g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~-----~~~d~~~a~~~aD~Vi  101 (209)
                      +|||+|+||+|++|++++..|++. |+  +|+++++++...  .++....   .++.+.     ..++++++++++|+||
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~~~---~v~~~~~Dl~~d~~~~~~~~~~~d~Vi   96 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQTDRL--GDLVKHE---RMHFFEGDITINKEWVEYHVKKCDVIL   96 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCCTTT--GGGGGST---TEEEEECCTTTCHHHHHHHHHHCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCChhhh--hhhccCC---CeEEEeCccCCCHHHHHHHhccCCEEE
Confidence            469999999999999999999987 88  999999975211  1111111   122111     1123566788999999


Q ss_pred             EcCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          102 IPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       102 ~~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ++|+......  .+..+++..|+..+.++++++++.+  .++|++|.
T Consensus        97 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS  141 (372)
T 3slg_A           97 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  141 (372)
T ss_dssp             ECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECC
T ss_pred             EcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCc
Confidence            9998653211  2445677889999999999999886  57777764

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=99.00  E-value=2.3e-10  Score=91.35  Aligned_cols=102  Identities=17%  Similarity=0.158  Sum_probs=73.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEe----ec-CCchhhhcCCCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY----MG-NDQLGQALEDSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~----~~-~~d~~~a~~~aD~Vi~~  103 (209)
                      |||+|+||+|++|++++..|++.|+  +|+++++++....  ++   .   .+..+    .. .++++++++++|+||++
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~--~~---~---~~~~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQVP--QY---N---NVKAVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSGGGSC--CC---T---TEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCccchh--hc---C---CceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence            5999999999999999999999998  9999999752111  11   1   11111    11 12467789999999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      +|....      +.+..|+....++++++++... .++|++|..
T Consensus        71 ag~~~~------~~~~~n~~~~~~l~~a~~~~~~-~~iv~~SS~  107 (219)
T 3dqp_A           71 SGSGGK------SLLKVDLYGAVKLMQAAEKAEV-KRFILLSTI  107 (219)
T ss_dssp             CCCTTS------SCCCCCCHHHHHHHHHHHHTTC-CEEEEECCT
T ss_pred             CcCCCC------CcEeEeHHHHHHHHHHHHHhCC-CEEEEECcc
Confidence            987642      2356688888999999987643 467777654

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=99.00  E-value=3.9e-10  Score=95.21  Aligned_cols=113  Identities=16%  Similarity=0.018  Sum_probs=76.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh---HHHhhcCCCCCcceeEee----cCCchhhhcCC--CC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYM----GNDQLGQALED--SD   98 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~---~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~--aD   98 (209)
                      .|+|+||||+|++|++++..|++.|+  +|+++++++...   ...++...   ..+..+.    ..+++++++++  .|
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~d   77 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRSGEFASWRLKELGIE---NDVKIIHMDLLEFSNIIRTIEKVQPD   77 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCCSTTTTHHHHHTTCT---TTEEECCCCTTCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccccccHhhcccc---CceeEEECCCCCHHHHHHHHHhcCCC
Confidence            36899999999999999999999998  999999975321   11122110   0121111    11234556665  59


Q ss_pred             EEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        99 ~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +|||+||.....  ..+..+++..|+..+.++++.+.+.....++|++|
T Consensus        78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  126 (345)
T 2z1m_A           78 EVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAS  126 (345)
T ss_dssp             EEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence            999999865311  23456678899999999999999765435677765

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=99.00  E-value=7.5e-10  Score=92.92  Aligned_cols=109  Identities=14%  Similarity=0.095  Sum_probs=76.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee----cCCchhhhcCC--CCE
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALED--SDV   99 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~--aD~   99 (209)
                      +++++|+||||+|++|++++..|++.|+  +|+++++++.. .  .+       .+..+.    ..+++++++++  +|+
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~--~l-------~~~~~~~Dl~d~~~~~~~~~~~~~d~   77 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNNEA-K--LP-------NVEMISLDIMDSQRVKKVISDIKPDY   77 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCTTC-C--CT-------TEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcc-c--cc-------eeeEEECCCCCHHHHHHHHHhcCCCE
Confidence            4557999999999999999999999998  99999996532 1  11       111111    11235566665  899


Q ss_pred             EEEcCCCCCC--CCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          100 VIIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       100 Vi~~ag~~~~--~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ||++||....  ...+..+++..|+..+.++++++.+.....++|++|.
T Consensus        78 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS  126 (321)
T 2pk3_A           78 IFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGS  126 (321)
T ss_dssp             EEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred             EEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcc
Confidence            9999986531  1124567788999999999999976644557777763

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=99.00  E-value=1.9e-09  Score=91.90  Aligned_cols=116  Identities=17%  Similarity=0.122  Sum_probs=76.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEecCCchhHHHhhcCCCCCcceeEee----cCCchhhhcC--CCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALE--DSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~-g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~--~aD~Vi  101 (209)
                      |||+||||+|++|++++..|++. |+  +|+++|+.........+.+......+..+.    ..++++++++  ++|+||
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   78 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVM   78 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC--eEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            58999999999999999999987 68  999999853111111121110011222211    1123456676  899999


Q ss_pred             EcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhh--CCC------eEEEEecC
Q 028437          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKY--CPN------AIVNMISN  146 (209)
Q Consensus       102 ~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~--~p~------~~viv~sn  146 (209)
                      |+||.....  ..+..+++..|+..+.++++++.+.  ...      +++|++|.
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS  133 (361)
T 1kew_A           79 HLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHIST  133 (361)
T ss_dssp             ECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEE
T ss_pred             ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCC
Confidence            999865311  1234567889999999999999887  433      37777763

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=99.00  E-value=2.1e-09  Score=90.10  Aligned_cols=114  Identities=11%  Similarity=-0.032  Sum_probs=72.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec-CCch---h-HHHhhcCCCCCcceeE----eecCCchhhhcCCCCE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTP---G-VAADVGHINTRSEVAG----YMGNDQLGQALEDSDV   99 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~-~~~~---~-~~~dl~~~~~~~~v~~----~~~~~d~~~a~~~aD~   99 (209)
                      ++|+||||+|++|++++..|++.|+  +|+++++ ++..   . ...++...  ...+..    +....+++++++++|+
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~   77 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIRADPERKRDVSFLTNLPGA--SEKLHFFNADLSNPDSFAAAIEGCVG   77 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECCCC----CCCHHHHTSTTH--HHHEEECCCCTTCGGGGHHHHTTCSE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEeCCccchhHHHHHHhhhcc--CCceEEEecCCCCHHHHHHHHcCCCE
Confidence            4899999999999999999999999  9998887 4311   1 11111100  001111    1112356778899999


Q ss_pred             EEEcCCCCCCCCCC-hhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          100 VIIPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       100 Vi~~ag~~~~~g~~-r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |||+|+.......+ ..+++..|+..+.++++++.+.....++|++|.
T Consensus        78 vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS  125 (322)
T 2p4h_X           78 IFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSS  125 (322)
T ss_dssp             EEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred             EEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Confidence            99999643111111 234788999999999999987622346776653

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=98.99  E-value=5.6e-10  Score=92.57  Aligned_cols=101  Identities=21%  Similarity=0.213  Sum_probs=74.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC--CCCEEEE
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVII  102 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aD~Vi~  102 (209)
                      ..+.+||+||||+|++|++++..|++.|+  +|++++++.     .|+.+.            ++++++++  ++|+||+
T Consensus         9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~Dl~d~------------~~~~~~~~~~~~d~vih   69 (292)
T 1vl0_A            9 HHHHMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITNV------------LAVNKFFNEKKPNVVIN   69 (292)
T ss_dssp             ---CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTCH------------HHHHHHHHHHCCSEEEE
T ss_pred             ccccceEEEECCCChHHHHHHHHHHhCCC--eEEeccCcc-----CCCCCH------------HHHHHHHHhcCCCEEEE
Confidence            34568999999999999999999999998  999998852     122221            23556676  7999999


Q ss_pred             cCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       103 ~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +||.....  ..+..+++..|+..+.++++++.+...  ++|++|.
T Consensus        70 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~SS  113 (292)
T 1vl0_A           70 CAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQIST  113 (292)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEE
T ss_pred             CCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEech
Confidence            99865311  124556788999999999999998753  6777653

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=98.97  E-value=1.1e-09  Score=91.65  Aligned_cols=104  Identities=17%  Similarity=0.197  Sum_probs=60.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCC--CCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED--SDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~--aD~Vi~~ag~  106 (209)
                      |+|+|+||+|++|++++..|++.|+  +|++++++....   .    ....++.   ..+++++++++  +|+||++||.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~---~----~~~~Dl~---d~~~~~~~~~~~~~d~vih~A~~   70 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFRRARP---K----FEQVNLL---DSNAVHHIIHDFQPHVIVHCAAE   70 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC----------------------------CHHHHHHHCCSEEEECC--
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccCCCCC---C----eEEecCC---CHHHHHHHHHhhCCCEEEECCcc
Confidence            6899999999999999999999998  999999754220   0    1111111   12345666764  8999999986


Q ss_pred             CCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       107 ~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ....  ..+..+++..|+..+.++++++.+...  ++|++|.
T Consensus        71 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS  110 (315)
T 2ydy_A           71 RRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYISS  110 (315)
T ss_dssp             -----------------CHHHHHHHHHHHHHTC--EEEEEEE
T ss_pred             cChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEch
Confidence            5321  123456678899999999999998653  6777653

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=98.97  E-value=1.7e-09  Score=91.52  Aligned_cols=118  Identities=14%  Similarity=0.051  Sum_probs=77.7

Q ss_pred             cccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee----cCCchhhhcC
Q 028437           20 GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALE   95 (209)
Q Consensus        20 ~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~   95 (209)
                      +..++..+.|+|+|+||+|++|++++..|++.|+  +|++++++.....  ++....  ..+..+.    ..++++++++
T Consensus        12 ~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~l--~~v~~~~~Dl~d~~~~~~~~~   85 (330)
T 2pzm_A           12 SGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFATGKR--EVLPPV--AGLSVIEGSVTDAGLLERAFD   85 (330)
T ss_dssp             --CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCSSSCG--GGSCSC--TTEEEEECCTTCHHHHHHHHH
T ss_pred             cCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCccch--hhhhcc--CCceEEEeeCCCHHHHHHHHh
Confidence            3444555557999999999999999999999998  9999999642111  000100  0121111    1123556777


Q ss_pred             --CCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           96 --DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        96 --~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                        ++|+||++||..........+ +..|+..+.++++++.+.. ..++|++|
T Consensus        86 ~~~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~-~~~iV~~S  135 (330)
T 2pzm_A           86 SFKPTHVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAG-VKRLLNFQ  135 (330)
T ss_dssp             HHCCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHT-CSEEEEEE
T ss_pred             hcCCCEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcC-CCEEEEec
Confidence              999999999875432111223 6889999999999998764 34666665

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=98.96  E-value=8.7e-10  Score=95.38  Aligned_cols=116  Identities=15%  Similarity=0.122  Sum_probs=75.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh------------------HHHh---hcCCCCCcceeE
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG------------------VAAD---VGHINTRSEVAG   83 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~------------------~~~d---l~~~~~~~~v~~   83 (209)
                      ..++++|+||||+||+|++++..|++.|+  +|+++|+.....                  ...+   +...    .+..
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~v~~   81 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGK----SIEL   81 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCC----CCEE
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEecCccccccccccccccccchhhhhhhhHhhccCC----ceEE
Confidence            45678999999999999999999999999  999999853211                  0111   1111    1111


Q ss_pred             ee----cCCchhhhcCC--CCEEEEcCCCCCCC--CCChh---HHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           84 YM----GNDQLGQALED--SDVVIIPAGVPRKP--GMTRD---DLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        84 ~~----~~~d~~~a~~~--aD~Vi~~ag~~~~~--g~~r~---~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +.    ..+++++++++  +|+|||+||.....  ..+..   .++..|+..+.++++++.+.....++|++|.
T Consensus        82 ~~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS  155 (404)
T 1i24_A           82 YVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGT  155 (404)
T ss_dssp             EESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             EECCCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence            11    11234566777  99999999865311  11222   3668899999999999998764347777764

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=98.96  E-value=6.6e-10  Score=91.94  Aligned_cols=96  Identities=22%  Similarity=0.260  Sum_probs=74.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC--CCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aD~Vi~~ag~  106 (209)
                      |||+|+||+|++|++++..|++.|+  +|+++++.+     .|+.+.            ++++++++  ++|+||++|+.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~D~~d~------------~~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKL-----LDITNI------------SQVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTT-----SCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccc-----cCCCCH------------HHHHHHHHhcCCCEEEECCcc
Confidence            5899999999999999999999998  999998832     122221            23456666  69999999987


Q ss_pred             CCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          107 PRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       107 ~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      .....  .+..+.+..|+..+.++++.+++...  ++|++|
T Consensus        67 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S  105 (287)
T 3sc6_A           67 TKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYIS  105 (287)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            64211  35667889999999999999998764  566665

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=98.95  E-value=1.9e-09  Score=84.40  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=72.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEe----ecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY----MGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~----~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |+|+|+||+|++|++++..|++.|+  +|+++++++...  .++...    .+..+    ...++++++++++|+||+++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~~~~--~~~~~~----~~~~~~~D~~~~~~~~~~~~~~d~vi~~a   75 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRL--PSEGPR----PAHVVVGDVLQAADVDKTVAGQDAVIVLL   75 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGS--CSSSCC----CSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeChhhc--ccccCC----ceEEEEecCCCHHHHHHHHcCCCEEEECc
Confidence            6999999999999999999999998  999999975211  111111    11111    11224667889999999999


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |......     ....|+....++++.+++... .+++++|.
T Consensus        76 ~~~~~~~-----~~~~n~~~~~~~~~~~~~~~~-~~~v~~Ss  111 (206)
T 1hdo_A           76 GTRNDLS-----PTTVMSEGARNIVAAMKAHGV-DKVVACTS  111 (206)
T ss_dssp             CCTTCCS-----CCCHHHHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred             cCCCCCC-----ccchHHHHHHHHHHHHHHhCC-CeEEEEee
Confidence            8653211     123678889999999988653 36666664

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=98.95  E-value=8.3e-10  Score=91.75  Aligned_cols=100  Identities=16%  Similarity=0.182  Sum_probs=73.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCC--CCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED--SDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~--aD~Vi~~ag~  106 (209)
                      |||+|+||+|++|++++..|+ .|+  +|+++++++. ....|+.+            .+++++++++  +|+||++|+.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~--~V~~~~r~~~-~~~~D~~d------------~~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG--NLIALDVHSK-EFCGDFSN------------PKGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS--EEEEECTTCS-SSCCCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC--eEEEeccccc-cccccCCC------------HHHHHHHHHhcCCCEEEECccc
Confidence            589999999999999999999 888  9999998641 00011111            1245666775  9999999986


Q ss_pred             CCC--CCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          107 PRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       107 ~~~--~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ...  ...+..+.+..|+..+.++++++++...  +++++|.
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS  104 (299)
T 1n2s_A           65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYST  104 (299)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEEE
T ss_pred             CCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEec
Confidence            531  1234567788999999999999987643  6777653

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.95  E-value=1.2e-09  Score=86.32  Aligned_cols=111  Identities=11%  Similarity=0.047  Sum_probs=75.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      .|||+|+||+|++|++++..|++.|+..+|+++++++.. ....+..  ...++.   ..+++++++  +|+||+++|..
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~-~~~~~~~--~~~D~~---~~~~~~~~~--~d~vi~~a~~~   76 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-EHPRLDN--PVGPLA---ELLPQLDGS--IDTAFCCLGTT   76 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-CCTTEEC--CBSCHH---HHGGGCCSC--CSEEEECCCCC
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc-cCCCceE--Eecccc---CHHHHHHhh--hcEEEECeeec
Confidence            469999999999999999999999875589999987532 0000000  001111   112344445  89999999865


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      .....+..+++..|+....++++.+.+... .+++++|..
T Consensus        77 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~v~~Ss~  115 (215)
T 2a35_A           77 IKEAGSEEAFRAVDFDLPLAVGKRALEMGA-RHYLVVSAL  115 (215)
T ss_dssp             HHHHSSHHHHHHHHTHHHHHHHHHHHHTTC-CEEEEECCT
T ss_pred             cccCCCHHHHHHhhHHHHHHHHHHHHHcCC-CEEEEECCc
Confidence            322235567788999999999999987643 356777643

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=98.94  E-value=1.3e-09  Score=91.76  Aligned_cols=113  Identities=14%  Similarity=0.053  Sum_probs=75.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeE-eecCCchhhhcC--CCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALE--DSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~--~aD~Vi~~a  104 (209)
                      ||||+|+||+|++|++++..|++.|+  +|++++++..... ..+.. ... .+.. +...++++++++  ++|+||++|
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~-~~~-~~~~D~~~~~~~~~~~~~~~~d~vih~a   75 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGL--SVVVVDNLQTGHE-DAITE-GAK-FYNGDLRDKAFLRDVFTQENIEAVMHFA   75 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCT-TSE-EEECCTTCHHHHHHHHHHSCEEEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCcCch-hhcCC-CcE-EEECCCCCHHHHHHHHhhcCCCEEEECC
Confidence            46999999999999999999999998  9999998642111 11211 100 0110 111123556677  899999999


Q ss_pred             CCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          105 GVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       105 g~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +.....  ..+..+++..|+..+.++++++.+... .++|++|.
T Consensus        76 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~~v~~Ss  118 (330)
T 2c20_A           76 ADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKV-DKFIFSST  118 (330)
T ss_dssp             CCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             cccCccccccCHHHHHHHHhHHHHHHHHHHHHcCC-CEEEEeCC
Confidence            865311  123456788899999999999987543 46676664

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=98.94  E-value=1.6e-09  Score=89.42  Aligned_cols=105  Identities=14%  Similarity=0.125  Sum_probs=77.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeE----eecCCchhhhcCCCCEEEEc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG----YMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~----~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      +++|+||||+|++|++++..|++.|+  +|++.|+++....     ..    .+..    +...++++++++++|+||++
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~~~~~-----~~----~~~~~~~Dl~d~~~~~~~~~~~D~vi~~   71 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSPLDPA-----GP----NEECVQCDLADANAVNAMVAGCDGIVHL   71 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSCCCCC-----CT----TEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCCcccc-----CC----CCEEEEcCCCCHHHHHHHHcCCCEEEEC
Confidence            35799999999999999999999998  9999999753211     00    1111    11123466788999999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ||...  ..+..+++..|+..+.++++.+.+.. ..++|++|.
T Consensus        72 Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iv~~SS  111 (267)
T 3rft_A           72 GGISV--EKPFEQILQGNIIGLYNLYEAARAHG-QPRIVFASS  111 (267)
T ss_dssp             CSCCS--CCCHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEEEE
T ss_pred             CCCcC--cCCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence            98742  23456778999999999999998764 346777653

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=98.93  E-value=3.5e-09  Score=84.51  Aligned_cols=99  Identities=20%  Similarity=0.222  Sum_probs=66.9

Q ss_pred             Ce-EEEEcCCCchHHHHHHHHH-hCCCccEEEEEecCCchhHHHhhcCCCCCcceeEe----ecCCchhhhcCCCCEEEE
Q 028437           29 RK-VAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY----MGNDQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~k-I~IiGasG~vG~~la~~L~-~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~----~~~~d~~~a~~~aD~Vi~  102 (209)
                      || |+|+||+|++|++++..|+ +.|+  +|+++++++.. ...++....  ..+..+    ...++++++++++|+||+
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~~-~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~d~vv~   79 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKT-RIPPEIIDH--ERVTVIEGSFQNPGXLEQAVTNAEVVFV   79 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHHH-HSCHHHHTS--TTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCccc-cchhhccCC--CceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence            45 9999999999999999999 8999  99999997430 112221001  011111    112346678899999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ++|..             |+. .+++++.+++... .++|++|..
T Consensus        80 ~ag~~-------------n~~-~~~~~~~~~~~~~-~~iv~iSs~  109 (221)
T 3r6d_A           80 GAMES-------------GSD-MASIVKALSRXNI-RRVIGVSMA  109 (221)
T ss_dssp             SCCCC-------------HHH-HHHHHHHHHHTTC-CEEEEEEET
T ss_pred             cCCCC-------------Chh-HHHHHHHHHhcCC-CeEEEEeec
Confidence            99753             344 7889999887553 356666543

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=98.93  E-value=1.2e-09  Score=94.30  Aligned_cols=114  Identities=15%  Similarity=0.024  Sum_probs=77.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEecCCchhHHHhhcCCCCCcceeEee----cCCchhhhcCCCCEEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVI  101 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g-~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aD~Vi  101 (209)
                      .+|+|+|+||+|++|++++..|++.| +  +|++++++..... ..+...   ..+..+.    ..++++++++++|+||
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~-~~l~~~---~~v~~~~~Dl~d~~~l~~~~~~~d~Vi  104 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK-INVPDH---PAVRFSETSITDDALLASLQDEYDYVF  104 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCS--EEEEECCCTTCCG-GGSCCC---TTEEEECSCTTCHHHHHHCCSCCSEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCc--eEEEEECCCCCch-hhccCC---CceEEEECCCCCHHHHHHHhhCCCEEE
Confidence            34699999999999999999999999 8  9999998642111 112100   1122211    1123567788999999


Q ss_pred             EcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       102 ~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ++|+.....  ..+..+++..|+..+.++++++.+.....++|++|.
T Consensus       105 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS  151 (377)
T 2q1s_A          105 HLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAA  151 (377)
T ss_dssp             ECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred             ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence            999865311  124456788999999999999987512336777764

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=98.93  E-value=2.7e-09  Score=91.36  Aligned_cols=112  Identities=16%  Similarity=0.204  Sum_probs=78.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEecCCchh--HHHhhcCCCCCcceeEee----cCCchhhhcCCCCEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPG--VAADVGHINTRSEVAGYM----GNDQLGQALEDSDVV  100 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~-g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aD~V  100 (209)
                      .++|+|+||+|++|++++..|++. |. .+|+++++++...  ...++...    .+..+.    ..++++++++++|+|
T Consensus        21 ~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~v~~~~~Dl~d~~~l~~~~~~~D~V   95 (344)
T 2gn4_A           21 NQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDELKQSEMAMEFNDP----RMRFFIGDVRDLERLNYALEGVDIC   95 (344)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHHHHHHHHHHHCCT----TEEEEECCTTCHHHHHHHTTTCSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChhhHHHHHHHhcCC----CEEEEECCCCCHHHHHHHHhcCCEE
Confidence            469999999999999999999988 73 2899999975321  11223221    122211    122456788999999


Q ss_pred             EEcCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       101 i~~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      |++||....+.  .+..+.+..|+..+.++++++.+... .++|++|
T Consensus        96 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v-~~~V~~S  141 (344)
T 2gn4_A           96 IHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAI-SQVIALS  141 (344)
T ss_dssp             EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTC-SEEEEEC
T ss_pred             EECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEec
Confidence            99998753211  23456788999999999999988653 4666665

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=98.92  E-value=1.8e-09  Score=91.19  Aligned_cols=109  Identities=15%  Similarity=0.083  Sum_probs=75.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEecCCchhHHHhhcCCCCCcceeEee--cC---CchhhhcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYM--GN---DQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~-g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~--~~---~d~~~a~~~aD~Vi~  102 (209)
                      |||+|+||+|++|++++..|++. |+  +|+++++++...  .++....   .+..+.  .+   +.++++++++|+|||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~d~vih   73 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLNHP---HFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGG--GGGTTCT---TEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCcchH--HHhhcCC---CeEEEeccccCcHHHHHhhccCCCEEEE
Confidence            58999999999999999999997 88  999999975321  1111111   122111  01   125567789999999


Q ss_pred             cCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       103 ~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +||.....  ..+..+++..|+....++++.+.+..  .++|++|.
T Consensus        74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS  117 (345)
T 2bll_A           74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  117 (345)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEec
Confidence            99865311  12345677889999999999998765  57777764

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=98.92  E-value=1.9e-09  Score=89.86  Aligned_cols=109  Identities=13%  Similarity=0.043  Sum_probs=72.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhcCCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g-~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .+++|+|+||+|++|++++..|++.| +  +|+++++++.......+...... .+. ++...++++++++++|.||+++
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~R~~~~~~~~~l~~~~~~-~~~~D~~d~~~l~~~~~~~d~vi~~a   80 (299)
T 2wm3_A            4 DKKLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAAKELRLQGAE-VVQGDQDDQVIMELALNGAYATFIVT   80 (299)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHHCSS--EEEEEESCTTSHHHHHHHHTTCE-EEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhcCCc--eEEEEEcCCCCHHHHHHHHCCCE-EEEecCCCHHHHHHHHhcCCEEEEeC
Confidence            35799999999999999999999988 8  99999997533222222221111 011 1111234678899999999998


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +.....      ....|+...+++++.+++... .++++.|
T Consensus        81 ~~~~~~------~~~~~~~~~~~~~~aa~~~gv-~~iv~~S  114 (299)
T 2wm3_A           81 NYWESC------SQEQEVKQGKLLADLARRLGL-HYVVYSG  114 (299)
T ss_dssp             CHHHHT------CHHHHHHHHHHHHHHHHHHTC-SEEEECC
T ss_pred             CCCccc------cchHHHHHHHHHHHHHHHcCC-CEEEEEc
Confidence            743111      134677888999999987653 3565544

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=98.91  E-value=7e-09  Score=86.83  Aligned_cols=112  Identities=18%  Similarity=0.133  Sum_probs=73.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      ||+|+||||+|++|++++..|++.|.  .+.+.+++.....  .+ .........++.. .++.++++++|+||++|+.+
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~v~~~~~~~~~~~--~~-~~~~~~~~~Dl~~-~~~~~~~~~~d~vih~a~~~   74 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESNE--IVVIDNLSSGNEE--FV-NEAARLVKADLAA-DDIKDYLKGAEEVWHIAANP   74 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTSC--EEEECCCSSCCGG--GS-CTTEEEECCCTTT-SCCHHHHTTCSEEEECCCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--EEEEEcCCCCChh--hc-CCCcEEEECcCCh-HHHHHHhcCCCEEEECCCCC
Confidence            46899999999999999999999984  5555444321111  11 1100000000111 35678889999999999865


Q ss_pred             CC--CCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          108 RK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       108 ~~--~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ..  ...+..+.+..|+..+.++++.+.+... .++|++|.
T Consensus        75 ~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~-~~iv~~SS  114 (313)
T 3ehe_A           75 DVRIGAENPDEIYRNNVLATYRLLEAMRKAGV-SRIVFTST  114 (313)
T ss_dssp             CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred             ChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCC-CeEEEeCc
Confidence            32  2235667889999999999999988753 36777764

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=98.91  E-value=7.2e-09  Score=87.55  Aligned_cols=111  Identities=15%  Similarity=0.050  Sum_probs=75.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC---C---CccEEEEEecCCc---hhHHHhhcCCCCCcceeEee----cCCchhhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLN---P---LVSRLALYDIANT---PGVAADVGHINTRSEVAGYM----GNDQLGQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~---g---~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~   95 (209)
                      |||+||||+|++|++++..|++.   |   +  +|+++++...   .....++...   ..+..+.    ..+++++++.
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~d~~~~~~~~~   75 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD--EVIVLDSLTYAGNRANLAPVDAD---PRLRFVHGDIRDAGLLARELR   75 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS--EEEEEECCCTTCCGGGGGGGTTC---TTEEEEECCTTCHHHHHHHTT
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCce--EEEEEECCCccCchhhhhhcccC---CCeEEEEcCCCCHHHHHHHhc
Confidence            58999999999999999999986   6   6  9999998531   1111122111   1222211    1123567788


Q ss_pred             CCCEEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           96 DSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ++|+|||+|+.....  ..+..+++..|+..+.++++++.+... .++|++|
T Consensus        76 ~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~-~~~v~~S  126 (337)
T 1r6d_A           76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGV-GRVVHVS  126 (337)
T ss_dssp             TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTC-CEEEEEE
T ss_pred             CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEec
Confidence            999999999865311  023456788999999999999988643 3666665

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=98.90  E-value=4e-09  Score=90.19  Aligned_cols=116  Identities=12%  Similarity=0.001  Sum_probs=73.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh---HHHhhcCCC--CCcceeEee----cCCchhhhcCC--
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHIN--TRSEVAGYM----GNDQLGQALED--   96 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~---~~~dl~~~~--~~~~v~~~~----~~~d~~~a~~~--   96 (209)
                      ||+|+||||+|++|++++..|++.|+  +|++++++....   ...++....  ....+..+.    ..+++++++++  
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   78 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQ   78 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcC
Confidence            46899999999999999999999998  999999864211   111111100  001122111    11234555664  


Q ss_pred             CCEEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCC--CeEEEEec
Q 028437           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMIS  145 (209)
Q Consensus        97 aD~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p--~~~viv~s  145 (209)
                      .|+||++||.....  ..+....+..|+..+.++++.+.+...  ..++|++|
T Consensus        79 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~S  131 (372)
T 1db3_A           79 PDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS  131 (372)
T ss_dssp             CSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence            69999999875322  123456678899999999999988654  25777776

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=98.89  E-value=3.8e-09  Score=90.00  Aligned_cols=116  Identities=16%  Similarity=0.011  Sum_probs=77.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCC---CcceeEee----cCCchhhhcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT---RSEVAGYM----GNDQLGQALEDSD   98 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~---~~~v~~~~----~~~d~~~a~~~aD   98 (209)
                      +|+|+|+||+|++|++++..|++.|+  +|+++++++.  .....++.....   ...+..+.    ..++++++++++|
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  104 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD  104 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCC
Confidence            46999999999999999999999998  9999998642  111111110000   00121111    1124567789999


Q ss_pred             EEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        99 ~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +||++||.....  ..+..+.+..|+..+.++++++.+... .++|++|.
T Consensus       105 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~~v~~SS  153 (352)
T 1sb8_A          105 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKV-QSFTYAAS  153 (352)
T ss_dssp             EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-SEEEEEEE
T ss_pred             EEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEecc
Confidence            999999864311  123456778899999999999987643 46666653

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=98.89  E-value=4.9e-09  Score=86.81  Aligned_cols=104  Identities=14%  Similarity=0.088  Sum_probs=71.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~-g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      |||+|+||+|++|++++..|.+. |+  +|+++++++...  .++.........-++...++++++++++|.||++++..
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~~--~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~   76 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEKV--PDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSII   76 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGGS--CGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHHH--HHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence            68999999999999999999887 88  999999975321  11222111000001111235678899999999998764


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ..        ...|+..++++++.+++... .+++++|
T Consensus        77 ~~--------~~~~~~~~~~l~~aa~~~gv-~~iv~~S  105 (289)
T 3e48_A           77 HP--------SFKRIPEVENLVYAAKQSGV-AHIIFIG  105 (289)
T ss_dssp             CS--------HHHHHHHHHHHHHHHHHTTC-CEEEEEE
T ss_pred             cc--------chhhHHHHHHHHHHHHHcCC-CEEEEEc
Confidence            21        24578889999999988653 3566665

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=98.89  E-value=3.2e-09  Score=85.61  Aligned_cols=115  Identities=19%  Similarity=0.193  Sum_probs=77.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      .|+|+|+||+|++|++++..|++.|+..+|+++++++.....  ..........-++...++++++++++|+||++||..
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~--~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE--EAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS--GGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccc--cccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            368999999999999999999999975589999997521110  000010000001112345677889999999999864


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      .. ..+..+++..|+....++++.+.+.. ..+++++|.
T Consensus        96 ~~-~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~iv~~SS  132 (242)
T 2bka_A           96 RG-KAGAEGFVRVDRDYVLKSAELAKAGG-CKHFNLLSS  132 (242)
T ss_dssp             HH-HHHHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEECC
T ss_pred             cc-cCCcccceeeeHHHHHHHHHHHHHCC-CCEEEEEcc
Confidence            21 11234567889999999999988754 346777764

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=98.89  E-value=3.3e-09  Score=90.48  Aligned_cols=114  Identities=16%  Similarity=0.135  Sum_probs=76.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhcCC--CCE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQALED--SDV   99 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~--aD~   99 (209)
                      .|+|+|+||+|++|++++..|++.|+  +|+++++++..  .....+...   ..+..+.    ...++++++++  +|+
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~d~   83 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARVA---DGMQSEIGDIRDQNKLLESIREFQPEI   83 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTTT---TTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCCcccchhhHhhccC---CceEEEEccccCHHHHHHHHHhcCCCE
Confidence            36999999999999999999999998  99999996421  111111111   0111111    11234556665  899


Q ss_pred             EEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          100 VIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       100 Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |||+||.+...  ..+..+++..|+..+.++++++.+.....++|++|.
T Consensus        84 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS  132 (357)
T 1rkx_A           84 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITS  132 (357)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECC
T ss_pred             EEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecC
Confidence            99999864211  123456788999999999999988753457777764

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=98.89  E-value=8.5e-09  Score=83.10  Aligned_cols=113  Identities=15%  Similarity=0.090  Sum_probs=75.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC--CCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhcCCCCEEEEc
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~--g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      ++++|+|+||+|++|++++..|++.  |+  +|+++++++..  ..++.. ... .+. ++...++++++++++|+||++
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~--~V~~~~r~~~~--~~~~~~-~~~-~~~~D~~d~~~~~~~~~~~d~vi~~   76 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF--VAKGLVRSAQG--KEKIGG-EAD-VFIGDITDADSINPAFQGIDALVIL   76 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC--EEEEEESCHHH--HHHTTC-CTT-EEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc--EEEEEEcCCCc--hhhcCC-Cee-EEEecCCCHHHHHHHHcCCCEEEEe
Confidence            3569999999999999999999998  77  99999996421  122211 111 011 111123467788999999999


Q ss_pred             CCCCCC------------CCC---ChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          104 AGVPRK------------PGM---TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       104 ag~~~~------------~g~---~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +|....            +..   ...+.+..|+....++++.+++... .++|++|.
T Consensus        77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~iv~~SS  133 (253)
T 1xq6_A           77 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGV-KHIVVVGS  133 (253)
T ss_dssp             CCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTC-SEEEEEEE
T ss_pred             ccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCC-CEEEEEcC
Confidence            986431            110   1123568899999999999988753 46666653

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=98.88  E-value=1.7e-09  Score=91.67  Aligned_cols=111  Identities=20%  Similarity=0.190  Sum_probs=75.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-------CccEEEEEecCCchhHHHhhcCCCCCcceeEe----ecCCchhhhc-
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNP-------LVSRLALYDIANTPGVAADVGHINTRSEVAGY----MGNDQLGQAL-   94 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g-------~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~----~~~~d~~~a~-   94 (209)
                      ++|+|+||||+|++|++++..|++.|       +  +|+++|++......  ...    ..+..+    ...+++++++ 
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~--~V~~~~r~~~~~~~--~~~----~~~~~~~~Dl~d~~~~~~~~~   84 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVE--KFTLIDVFQPEAPA--GFS----GAVDARAADLSAPGEAEKLVE   84 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEE--EEEEEESSCCCCCT--TCC----SEEEEEECCTTSTTHHHHHHH
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCc--eEEEEEccCCcccc--ccC----CceeEEEcCCCCHHHHHHHHh
Confidence            34699999999999999999999998       6  99999986421110  000    112111    1123455667 


Q ss_pred             CCCCEEEEcCCCCCCC-CCChhHHHHHHHHHHHHHHHHHHhhC----CCeEEEEec
Q 028437           95 EDSDVVIIPAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYC----PNAIVNMIS  145 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~-g~~r~~~~~~N~~~~~~i~~~i~~~~----p~~~viv~s  145 (209)
                      .++|+||++||..... ..+..+.+..|+..+.++++++.+..    +..++|++|
T Consensus        85 ~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~S  140 (342)
T 2hrz_A           85 ARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTS  140 (342)
T ss_dssp             TCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             cCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeC
Confidence            4899999999865310 12345667889999999999998765    245677665

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=98.87  E-value=2.7e-09  Score=87.57  Aligned_cols=108  Identities=20%  Similarity=0.250  Sum_probs=75.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      ++|+|+||+|++|++++..|++.|+  +|+++++++.........  ....++.   ..++++++++++|+||++||...
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~--~~~~Dl~---d~~~~~~~~~~~d~vi~~a~~~~   75 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVDLGAAEAHEE--IVACDLA---DAQAVHDLVKDCDGIIHLGGVSV   75 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSCCCCCCTTEE--ECCCCTT---CHHHHHHHHTTCSEEEECCSCCS
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCCccccCCCcc--EEEccCC---CHHHHHHHHcCCCEEEECCcCCC
Confidence            5899999999999999999999998  999999965311000000  0001111   11245678899999999998752


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       109 ~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                        ..+..+.+..|+..+.++++.+.+.. ..++|++|.
T Consensus        76 --~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS  110 (267)
T 3ay3_A           76 --ERPWNDILQANIIGAYNLYEAARNLG-KPRIVFASS  110 (267)
T ss_dssp             --CCCHHHHHHHTHHHHHHHHHHHHHTT-CCEEEEEEE
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHHhC-CCEEEEeCC
Confidence              23456678899999999999998754 346666653

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=98.87  E-value=5.4e-09  Score=88.59  Aligned_cols=110  Identities=18%  Similarity=0.103  Sum_probs=74.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee----cCCchhhhcCC--CCEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALED--SDVVI  101 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~--aD~Vi  101 (209)
                      +|+|+|+||+|++|++++..|++.|+  +|++++++.... ...+....   .+..+.    ..+++++++++  +|+||
T Consensus        21 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~-~~~l~~~~---~~~~~~~Dl~d~~~~~~~~~~~~~D~vi   94 (333)
T 2q1w_A           21 MKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFATGR-REHLKDHP---NLTFVEGSIADHALVNQLIGDLQPDAVV   94 (333)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCC-GGGSCCCT---TEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCCccc-hhhHhhcC---CceEEEEeCCCHHHHHHHHhccCCcEEE
Confidence            46999999999999999999999998  999999864211 11121110   121111    11235566777  99999


Q ss_pred             EcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ++||..........+ +..|+..+.++++++.+.. ..++|++|
T Consensus        95 h~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~-~~~iV~~S  136 (333)
T 2q1w_A           95 HTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNN-VGRFVYFQ  136 (333)
T ss_dssp             ECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTT-CSEEEEEE
T ss_pred             ECceecCCCccCChH-HHHHHHHHHHHHHHHHHhC-CCEEEEEC
Confidence            999875432111222 7889999999999998754 34666665

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=98.86  E-value=4.3e-09  Score=89.66  Aligned_cols=105  Identities=18%  Similarity=0.223  Sum_probs=73.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-----CccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhcCC---CCE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNP-----LVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQALED---SDV   99 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g-----~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~---aD~   99 (209)
                      |||+|+||+|++|++++..|++.|     +  +|+++++++....   +...... .+. ++...+++++++++   +|+
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~--~V~~~~r~~~~~~---~~~~~~~-~~~~Dl~d~~~~~~~~~~~~~~d~   75 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPW--KVYGVARRTRPAW---HEDNPIN-YVQCDISDPDDSQAKLSPLTDVTH   75 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSE--EEEEEESSCCCSC---CCSSCCE-EEECCTTSHHHHHHHHTTCTTCCE
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCce--EEEEEeCCCCccc---cccCceE-EEEeecCCHHHHHHHHhcCCCCCE
Confidence            689999999999999999999998     7  9999999653211   1111100 000 01111235677888   999


Q ss_pred             EEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCC-eEEE
Q 028437          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN-AIVN  142 (209)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~-~~vi  142 (209)
                      |||+|+...   .+..++...|+..+.++++++.+.++. .+++
T Consensus        76 vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v  116 (364)
T 2v6g_A           76 VFYVTWANR---STEQENCEANSKMFRNVLDAVIPNCPNLKHIS  116 (364)
T ss_dssp             EEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEE
T ss_pred             EEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhccccceEE
Confidence            999998653   345678899999999999999987432 3454

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.86  E-value=9.8e-10  Score=94.46  Aligned_cols=94  Identities=16%  Similarity=0.198  Sum_probs=71.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      |||+|+||+|++|++++..|++.|+. +|+.+|++         .+            .++++++++++|+||++|+...
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~-~v~~~d~~---------~d------------~~~l~~~~~~~d~Vih~a~~~~   58 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDH-HIFEVHRQ---------TK------------EEELESALLKADFIVHLAGVNR   58 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEECCTT---------CC------------HHHHHHHHHHCSEEEECCCSBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC-EEEEECCC---------CC------------HHHHHHHhccCCEEEECCcCCC
Confidence            69999999999999999999998853 78888873         00            1245677889999999998754


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       109 ~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      .  .+..++...|+..++++++++++.....+++++|.
T Consensus        59 ~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss   94 (369)
T 3st7_A           59 P--EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSS   94 (369)
T ss_dssp             T--TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred             C--CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCc
Confidence            2  23344567789999999999988765556777763

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=98.85  E-value=6.9e-09  Score=86.97  Aligned_cols=100  Identities=11%  Similarity=0.084  Sum_probs=74.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC--CCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aD~Vi~~ag  105 (209)
                      +|||+|+||+|++|++++..|++.|+  +|++++++.    ..|+.+            .++++++++  ++|+||++|+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~--~v~~~~r~~----~~D~~d------------~~~~~~~~~~~~~d~vih~a~   64 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRD----ELNLLD------------SRAVHDFFASERIDQVYLAAA   64 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTT----TCCTTC------------HHHHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--eEEEEecCc----cCCccC------------HHHHHHHHHhcCCCEEEEcCe
Confidence            36999999999999999999999998  888887742    112221            124566777  8999999998


Q ss_pred             CCCCC---CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          106 VPRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       106 ~~~~~---g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      .....   ..+..+++..|+..+.++++++.+... .++|++|.
T Consensus        65 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~v~~SS  107 (321)
T 1e6u_A           65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDV-NKLLFLGS  107 (321)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             ecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEcc
Confidence            65311   124456788899999999999988643 36777764

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=98.85  E-value=1.4e-08  Score=82.20  Aligned_cols=106  Identities=18%  Similarity=0.158  Sum_probs=73.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC----CCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE----DSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~----~aD~Vi~~a  104 (209)
                      ++|+|+||+|++|++++..|++.|+  +|+++++++.....      ....++..   .++++++++    +.|+||++|
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~------~~~~D~~~---~~~~~~~~~~~~~~~d~vi~~A   70 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH--TVIGIDRGQADIEA------DLSTPGGR---ETAVAAVLDRCGGVLDGLVCCA   70 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEEC------CTTSHHHH---HHHHHHHHHHHTTCCSEEEECC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCChhHccc------cccCCccc---HHHHHHHHHHcCCCccEEEECC
Confidence            4799999999999999999999998  99999997521110      01111111   123344443    899999999


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      |.... ..+..+.+..|+....++++.+.+.   ....++|++|.
T Consensus        71 g~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS  114 (255)
T 2dkn_A           71 GVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS  114 (255)
T ss_dssp             CCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred             CCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEec
Confidence            87642 2345677888999888888877665   23467777764

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=98.83  E-value=4.4e-09  Score=87.85  Aligned_cols=108  Identities=19%  Similarity=0.134  Sum_probs=71.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      +|||+|+||+|++|++++..|++.|+  +|++++++...  .....+........+..      ....+.++|+||++|+
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~Dl~~~d~vi~~a~   78 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGE--EVTVLDDLRVPPMIPPEGTGKFLEKPVLEL------EERDLSDVRLVYHLAS   78 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCSSCCSSCCTTSSEEECSCGGGC------CHHHHTTEEEEEECCC
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccccchhhhhhhccCCCeeE------EeCccccCCEEEECCc
Confidence            57999999999999999999999998  99999986421  01111111000001111      2334558999999998


Q ss_pred             CCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          106 VPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       106 ~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      .....  ..+..+.+. |+..+.++++++.+... .++|++|
T Consensus        79 ~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v-~~~v~~S  118 (321)
T 3vps_A           79 HKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGV-PKVVVGS  118 (321)
T ss_dssp             CCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTC-CEEEEEE
T ss_pred             cCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCC-CeEEEec
Confidence            65311  112234556 99999999999998763 3566665

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=98.83  E-value=1e-09  Score=94.49  Aligned_cols=115  Identities=10%  Similarity=-0.083  Sum_probs=73.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh---HHHhhcCCC--CCc-ceeEee----cCCchhhhcCC--
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHIN--TRS-EVAGYM----GNDQLGQALED--   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~---~~~dl~~~~--~~~-~v~~~~----~~~d~~~a~~~--   96 (209)
                      ++|+|+||+|++|++++..|++.|+  +|++++++....   ....+....  ... .+..+.    ...++.+++++  
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  106 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK  106 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence            5899999999999999999999998  999999864211   011111000  000 122211    11234556665  


Q ss_pred             CCEEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCC----CeEEEEec
Q 028437           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCP----NAIVNMIS  145 (209)
Q Consensus        97 aD~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p----~~~viv~s  145 (209)
                      .|+||++||.....  ..+..+.+..|+..+.++++++.+...    .+++|++|
T Consensus       107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~S  161 (381)
T 1n7h_A          107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAG  161 (381)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeC
Confidence            59999999865311  123456678899999999999987642    34777765

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=98.83  E-value=7.7e-09  Score=87.63  Aligned_cols=113  Identities=19%  Similarity=0.074  Sum_probs=74.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--------hHHHhhcCCCCCcceeEee----cCCchhhhcC-
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--------GVAADVGHINTRSEVAGYM----GNDQLGQALE-   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--------~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~-   95 (209)
                      |+|+|+||+|++|++++..|++.|+  +|+++++....        ....++.... ...+..+.    ..++++++++ 
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~   79 (348)
T 1ek6_A            3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK   79 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHHh
Confidence            6999999999999999999999998  99999874311        1122221100 00111111    1123556666 


Q ss_pred             -CCCEEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           96 -DSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        96 -~aD~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                       ++|+||++||.....  ..+..+++..|+..+.++++.+++... .++|++|
T Consensus        80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~iv~~S  131 (348)
T 1ek6_A           80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGV-KNLVFSS  131 (348)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEEE
T ss_pred             cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCC-CEEEEEC
Confidence             899999999865311  123456788999999999999987643 4566665

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=98.82  E-value=3.4e-09  Score=91.03  Aligned_cols=116  Identities=9%  Similarity=-0.032  Sum_probs=75.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch---hHHHhhcCCC---CCcceeEee----cCCchhhhcCC--
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHIN---TRSEVAGYM----GNDQLGQALED--   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~---~~~~dl~~~~---~~~~v~~~~----~~~d~~~a~~~--   96 (209)
                      ++|+|+||+|++|++++..|++.|+  +|+++++++..   ....++....   ....+..+.    ..+++.+++++  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  102 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK  102 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence            5899999999999999999999998  99999986421   1111121100   001122211    11234455665  


Q ss_pred             CCEEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCC--CeEEEEecC
Q 028437           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p--~~~viv~sn  146 (209)
                      .|+||++||.....  ..+..+.+..|+..+.++++++.+...  ..++|++|.
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS  156 (375)
T 1t2a_A          103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAST  156 (375)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEE
T ss_pred             CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecc
Confidence            59999999865311  123456678899999999999988653  156777653

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=98.81  E-value=9.3e-09  Score=85.88  Aligned_cols=105  Identities=15%  Similarity=0.016  Sum_probs=67.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHH---HhhcCCCCCcceeEeecCCchhhhcCCCCEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVA---ADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~---~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~V  100 (209)
                      .+|+|+|+||+|++|++++..|++.|+  +|++++++..   ....   .++.........-++...+++.++++++|+|
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~v   80 (313)
T 1qyd_A            3 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVV   80 (313)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEE
Confidence            357899999999999999999999998  9999999742   1111   1222221110000111123567889999999


Q ss_pred             EEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEE
Q 028437          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN  142 (209)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~vi  142 (209)
                      |++++.....         .|+...+++++++++.+.-.++|
T Consensus        81 i~~a~~~~~~---------~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           81 ISALAGGVLS---------HHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             EECCCCSSSS---------TTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             EECCccccch---------hhHHHHHHHHHHHHhcCCCceEE
Confidence            9998865311         24555688888888765223454

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.81  E-value=1.7e-08  Score=84.41  Aligned_cols=102  Identities=21%  Similarity=0.325  Sum_probs=66.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhh--------------cCCCC---CcceeEeecC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADV--------------GHINT---RSEVAGYMGN   87 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl--------------~~~~~---~~~v~~~~~~   87 (209)
                      +++||+|+|+ |.+|..++..++..|+  +|+++|+++...  ....+              .....   ...+..   +
T Consensus         3 ~~~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~---~   76 (283)
T 4e12_A            3 GITNVTVLGT-GVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY---S   76 (283)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE---E
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE---e
Confidence            4579999999 9999999999999999  999999975211  11110              00000   011222   3


Q ss_pred             CchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCC
Q 028437           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (209)
Q Consensus        88 ~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~  150 (209)
                      +++++++++||+||.++..              +.+..+.+.+.+.+.. |+++  +++|.+..
T Consensus        77 ~~~~~~~~~aDlVi~av~~--------------~~~~~~~v~~~l~~~~~~~~i--l~s~tS~~  124 (283)
T 4e12_A           77 DDLAQAVKDADLVIEAVPE--------------SLDLKRDIYTKLGELAPAKTI--FATNSSTL  124 (283)
T ss_dssp             SCHHHHTTTCSEEEECCCS--------------CHHHHHHHHHHHHHHSCTTCE--EEECCSSS
T ss_pred             CCHHHHhccCCEEEEeccC--------------cHHHHHHHHHHHHhhCCCCcE--EEECCCCC
Confidence            5777889999999999632              2345566667777776 4554  35665554

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=98.80  E-value=3.1e-09  Score=88.02  Aligned_cols=105  Identities=12%  Similarity=0.129  Sum_probs=69.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhcCC-CCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQALED-SDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~-aD~Vi~~ag  105 (209)
                      +|||+|+|+ |++|++++..|++.|+  +|+++++++..     +. .... .+. ++....++++++++ +|+||++|+
T Consensus         3 ~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~-----~~-~~~~-~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            3 LSKILIAGC-GDLGLELARRLTAQGH--EVTGLRRSAQP-----MP-AGVQ-TLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECTTSC-----CC-TTCC-EEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCccc-----cc-cCCc-eEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            469999996 9999999999999999  99999996421     11 1000 000 01112345567777 999999987


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ...   .+..++...|+..+.++++++.+.. ..++|++|.
T Consensus        73 ~~~---~~~~~~~~~n~~~~~~ll~a~~~~~-~~~~v~~SS  109 (286)
T 3gpi_A           73 ASE---YSDEHYRLSYVEGLRNTLSALEGAP-LQHVFFVSS  109 (286)
T ss_dssp             HHH---HC-----CCSHHHHHHHHHHTTTSC-CCEEEEEEE
T ss_pred             CCC---CCHHHHHHHHHHHHHHHHHHHhhCC-CCEEEEEcc
Confidence            532   2234556779999999999998643 346666653

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=98.80  E-value=7.1e-09  Score=85.57  Aligned_cols=104  Identities=11%  Similarity=0.069  Sum_probs=71.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC--CCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~--g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |+|+|+||+|++|++++..|++.  |+  +|+++++++....  ++...... .+. ++...+++.++++++|+||++++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~l~~~~~~-~~~~D~~d~~~l~~~~~~~d~vi~~a~   75 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS--QIIAIVRNVEKAS--TLADQGVE-VRHGDYNQPESLQKAFAGVSKLLFISG   75 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTTH--HHHHTTCE-EEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC--eEEEEEcCHHHHh--HHhhcCCe-EEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence            47999999999999999999998  87  9999999753221  11111110 010 11112346788999999999988


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ..  .+    +  ..|+....++++++++... .+++++|.
T Consensus        76 ~~--~~----~--~~n~~~~~~l~~a~~~~~~-~~~v~~Ss  107 (287)
T 2jl1_A           76 PH--YD----N--TLLIVQHANVVKAARDAGV-KHIAYTGY  107 (287)
T ss_dssp             CC--SC----H--HHHHHHHHHHHHHHHHTTC-SEEEEEEE
T ss_pred             CC--cC----c--hHHHHHHHHHHHHHHHcCC-CEEEEECC
Confidence            53  11    1  4588899999999987643 35666653

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=98.80  E-value=2.4e-08  Score=87.57  Aligned_cols=113  Identities=16%  Similarity=0.126  Sum_probs=72.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-----HHhhcCC-------CCCcceeEe----ecCCch
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHI-------NTRSEVAGY----MGNDQL   90 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-----~~dl~~~-------~~~~~v~~~----~~~~d~   90 (209)
                      ++++|+|+||+|++|++++..|++.|.  +|+++++++....     ...+...       .....+..+    ....++
T Consensus        68 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  145 (427)
T 4f6c_A           68 PLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  145 (427)
T ss_dssp             CCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCC
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccC
Confidence            456999999999999999999988888  9999999753110     1111100       000112211    111233


Q ss_pred             hhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        91 ~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      . ++.++|+||++|+..... .+..+++..|+..+.++++++.+  ...+++++|
T Consensus       146 ~-~~~~~d~Vih~A~~~~~~-~~~~~~~~~Nv~g~~~l~~aa~~--~~~~~v~~S  196 (427)
T 4f6c_A          146 V-LPENMDTIIHAGARTDHF-GDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVS  196 (427)
T ss_dssp             C-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH--TTCEEEEEE
T ss_pred             C-CcCCCCEEEECCcccCCC-CCHHHHHHHHHHHHHHHHHHHHh--cCCcEEEEC
Confidence            3 678999999999875322 34456788999999999999988  345677665

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=98.80  E-value=1.3e-08  Score=82.27  Aligned_cols=108  Identities=14%  Similarity=0.063  Sum_probs=67.5

Q ss_pred             ccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEecCCchhHHHhhcCCCCCcceeEe----ecCCchhhh
Q 028437           19 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGY----MGNDQLGQA   93 (209)
Q Consensus        19 ~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g-~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~----~~~~d~~~a   93 (209)
                      ++...+...|++|+|+||+|++|++++..|++.| +  +|+++++++...  .++...    .+..+    ...++++++
T Consensus        14 ~~~~~~~~~mk~vlVtGatG~iG~~l~~~L~~~G~~--~V~~~~R~~~~~--~~~~~~----~~~~~~~Dl~d~~~~~~~   85 (236)
T 3qvo_A           14 RENLYFQGHMKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQPAKI--HKPYPT----NSQIIMGDVLNHAALKQA   85 (236)
T ss_dssp             --------CCEEEEEETTTSHHHHHHHHHHTTCTTE--EEEEEESSGGGS--CSSCCT----TEEEEECCTTCHHHHHHH
T ss_pred             ccceeecCcccEEEEEeCCcHHHHHHHHHHHhCCCc--eEEEEEcChhhh--cccccC----CcEEEEecCCCHHHHHHH
Confidence            3344444445789999999999999999999999 7  999999975211  111111    11111    112346778


Q ss_pred             cCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        94 ~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ++++|+||+++|...      .+      ..++++++.+++.. ..++|++|..
T Consensus        86 ~~~~D~vv~~a~~~~------~~------~~~~~~~~~~~~~~-~~~iV~iSS~  126 (236)
T 3qvo_A           86 MQGQDIVYANLTGED------LD------IQANSVIAAMKACD-VKRLIFVLSL  126 (236)
T ss_dssp             HTTCSEEEEECCSTT------HH------HHHHHHHHHHHHTT-CCEEEEECCC
T ss_pred             hcCCCEEEEcCCCCc------hh------HHHHHHHHHHHHcC-CCEEEEEecc
Confidence            999999999987431      11      23467888887754 3467777754

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=98.79  E-value=4.4e-09  Score=87.75  Aligned_cols=109  Identities=13%  Similarity=0.071  Sum_probs=74.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC--CCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhcC--CCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQALE--DSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~--g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~--~aD~Vi~~  103 (209)
                      |||+|+||+|++|++++..|++.  |+  +|+++++++......  ....   .+. ++...++++++++  ++|+||++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~--~~~~---~~~~D~~d~~~~~~~~~~~~~d~vih~   75 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTE--NVIASDIRKLNTDVV--NSGP---FEVVNALDFNQIEHLVEVHKITDIYLM   75 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGG--GEEEEESCCCSCHHH--HSSC---EEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCC--EEEEEcCCCcccccc--CCCc---eEEecCCCHHHHHHHHhhcCCCEEEEC
Confidence            68999999999999999999988  78  999999865321111  1110   011 0111124556677  89999999


Q ss_pred             CCCCCCC-CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          104 AGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       104 ag~~~~~-g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      |+..... ..+..+++..|+..+.++++++.+... .++|++|
T Consensus        76 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~v~~S  117 (312)
T 2yy7_A           76 AALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKI-KKIFWPS  117 (312)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSC-SEEECCE
T ss_pred             CccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCC-CEEEEec
Confidence            9864311 124556788999999999999987542 3666665

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.78  E-value=9e-09  Score=91.84  Aligned_cols=137  Identities=15%  Similarity=0.231  Sum_probs=83.9

Q ss_pred             hhccccccccccccCC-CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH------HHhhcCCC-C---
Q 028437            9 VKTLAKPAGARGYSSE-SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV------AADVGHIN-T---   77 (209)
Q Consensus         9 ~~~~~~~~~~~~~~~~-~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~------~~dl~~~~-~---   77 (209)
                      ++...-|.++..+... ..+.+||+|+|+ |.+|..++..+++.|+  +|+++|+++.++.      ...+.... .   
T Consensus        34 ~~~w~~p~~~~~~~~~~~~~i~kVaVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~  110 (460)
T 3k6j_A           34 AGQWSLPNDRGDHTNSEAYDVNSVAIIGG-GTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVMYAREKSFKRLNDK  110 (460)
T ss_dssp             TTSCBCSTTSCBTTSCCCCCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHH
T ss_pred             hccccCCCCccccccCCcccCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            3334455554433333 234479999999 9999999999999999  9999999853211      01111111 0   


Q ss_pred             -----CcceeEeecCCchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCCc
Q 028437           78 -----RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNST  151 (209)
Q Consensus        78 -----~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p-~~~viv~snP~~~~  151 (209)
                           ..++..   ++|+ +++++||+||.++.              ++....+.+.+.+.++++ +++  ++||.+...
T Consensus       111 ~~~~~~~~i~~---t~dl-~al~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~aI--lasnTSsl~  170 (460)
T 3k6j_A          111 RIEKINANLKI---TSDF-HKLSNCDLIVESVI--------------EDMKLKKELFANLENICKSTCI--FGTNTSSLD  170 (460)
T ss_dssp             HHHHHHTTEEE---ESCG-GGCTTCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCE--EEECCSSSC
T ss_pred             HHHHHhcceEE---eCCH-HHHccCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCCE--EEecCCChh
Confidence                 012332   3466 57999999999952              244566777888888774 554  367776542


Q ss_pred             HHHHHHHHHHhCCCCCCcEEEE
Q 028437          152 VPIAAEVFKKAGTYNEKKLFGV  173 (209)
Q Consensus       152 ~~i~~~~~~~~~~~p~~~vig~  173 (209)
                         ++++....+  .+++++|+
T Consensus       171 ---i~~ia~~~~--~p~r~iG~  187 (460)
T 3k6j_A          171 ---LNEISSVLR--DPSNLVGI  187 (460)
T ss_dssp             ---HHHHHTTSS--SGGGEEEE
T ss_pred             ---HHHHHHhcc--CCcceEEE
Confidence               244332222  23456665

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=98.78  E-value=1.3e-08  Score=94.38  Aligned_cols=112  Identities=15%  Similarity=0.119  Sum_probs=77.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEecCCchhHHHhhcCCCCCcceeEeec--C--Cc-hhhhcCCCCE
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG--N--DQ-LGQALEDSDV   99 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~-g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~--~--~d-~~~a~~~aD~   99 (209)
                      .++|+|+||||+|++|++++..|++. |+  +|+++++++...  .++...   ..+..+..  +  .+ ++++++++|+
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~--~V~~~~r~~~~~--~~~~~~---~~v~~v~~Dl~d~~~~~~~~~~~~D~  385 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLNH---PHFHFVEGDISIHSEWIEYHVKKCDV  385 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSE--EEEEEESCCTTT--GGGTTC---TTEEEEECCTTTCHHHHHHHHHHCSE
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCC--EEEEEEcCchhh--hhhccC---CceEEEECCCCCcHHHHHHhhcCCCE
Confidence            35579999999999999999999997 78  999999964221  111111   11222110  1  11 4456789999


Q ss_pred             EEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          100 VIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       100 Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |||+||.....  ..+..+++..|+..+.++++++.+..  .+++++|.
T Consensus       386 Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS  432 (660)
T 1z7e_A          386 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  432 (660)
T ss_dssp             EEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             EEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEec
Confidence            99999865321  12345677889999999999998865  67777764

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=98.77  E-value=1.5e-08  Score=83.96  Aligned_cols=104  Identities=13%  Similarity=0.085  Sum_probs=68.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCC--CCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED--SDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~--aD~Vi~~a  104 (209)
                      ++|||+|+||+|++|++++..|++.|+.........   .....|+.+            .+++++++++  +|+|||+|
T Consensus         5 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~---~~~~~D~~d------------~~~~~~~~~~~~~d~Vih~A   69 (319)
T 4b8w_A            5 QSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFV---SSKDADLTD------------TAQTRALFEKVQPTHVIHLA   69 (319)
T ss_dssp             CCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEEC---CTTTCCTTS------------HHHHHHHHHHSCCSEEEECC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhcCCccccccccc---CceecccCC------------HHHHHHHHhhcCCCEEEECc
Confidence            357999999999999999999999986100000000   000111111            1235566766  99999999


Q ss_pred             CCCCC---CCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          105 GVPRK---PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       105 g~~~~---~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +....   ...+..+++..|+..+.++++.+++.... ++|++|.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~v~~SS  113 (319)
T 4b8w_A           70 AMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR-KVVSCLS  113 (319)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEECC
T ss_pred             eecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEcc
Confidence            87431   12345677899999999999999887533 5666653

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=98.77  E-value=1.2e-08  Score=85.36  Aligned_cols=111  Identities=19%  Similarity=0.086  Sum_probs=73.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhcC--CCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQALE--DSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~--~aD~Vi~~ag  105 (209)
                      |||+||||+|++|++++..|++.|+  +|+++|+.... ....+.. ... .+. ++...++++++++  ++|+||++|+
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~~~~~~~-~~~-~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   75 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL--EVAVLDNLATG-KRENVPK-GVP-FFRVDLRDKEGVERAFREFRPTHVSHQAA   75 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEECCCSSC-CGGGSCT-TCC-EECCCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCCcC-chhhccc-CeE-EEECCCCCHHHHHHHHHhcCCCEEEECcc
Confidence            5899999999999999999999999  99999984311 1111111 100 000 0111123556676  8999999998


Q ss_pred             CCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          106 VPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       106 ~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      .....  ..+..+.+..|+..+.++++++.+... .++|++|
T Consensus        76 ~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~-~~iv~~S  116 (311)
T 2p5y_A           76 QASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGV-EKLVFAS  116 (311)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-SEEEEEE
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-CEEEEeC
Confidence            64311  123456778899999999999987643 3566665

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=98.77  E-value=1.8e-08  Score=85.18  Aligned_cols=113  Identities=19%  Similarity=0.106  Sum_probs=72.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhc---CCCCCccee-EeecCCchhhhcC--CCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVG---HINTRSEVA-GYMGNDQLGQALE--DSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~---~~~~~~~v~-~~~~~~d~~~a~~--~aD~V  100 (209)
                      |||+|+||+|++|++++..|++.|+  +|+++|+...  ......+.   ..... .+. ++...++++++++  ++|+|
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dl~~~~~~~~~~~~~~~D~v   77 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLGGKHPT-FVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHHTSCCE-EEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCCcchhHHHHHHhhcCCcce-EEEccCCCHHHHHHHhhccCCCEE
Confidence            5899999999999999999999999  9999987421  11111111   11100 011 0111123445555  58999


Q ss_pred             EEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       101 i~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ||+||.....  ..+..+++..|+..+.++++.+++... .++|++|
T Consensus        78 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~iv~~S  123 (338)
T 1udb_A           78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANV-KNFIFSS  123 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTC-CEEEEEE
T ss_pred             EECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEc
Confidence            9999864211  123456788999999999999987653 3566665

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=98.76  E-value=5.1e-08  Score=87.06  Aligned_cols=117  Identities=18%  Similarity=0.132  Sum_probs=77.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC---CCccEEEEEecCCchhH-HHhhcCCC--------------CCcceeEeec
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLN---PLVSRLALYDIANTPGV-AADVGHIN--------------TRSEVAGYMG   86 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~---g~~~ev~l~D~~~~~~~-~~dl~~~~--------------~~~~v~~~~~   86 (209)
                      ...+|+|+||||+|++|++++..|++.   |+  +|+++++.+.... ...+.+..              ....+..+.+
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~--~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~  147 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDG--RLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAG  147 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTC--EEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEEC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCC--EEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEe
Confidence            345679999999999999999999988   77  9999999753211 11111100              0012222211


Q ss_pred             ----------CCchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           87 ----------NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        87 ----------~~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                                .++++++++++|+||++|+....  .+..+.+..|+..+.++++.+.+.... +++++|.
T Consensus       148 Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~~V~iSS  214 (478)
T 4dqv_A          148 DKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLK-PFTYVST  214 (478)
T ss_dssp             CTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCC-CEEEEEE
T ss_pred             ECCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEEee
Confidence                      11345667899999999987543  334466789999999999999876543 4555653

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.76  E-value=2.9e-07  Score=81.77  Aligned_cols=134  Identities=16%  Similarity=0.200  Sum_probs=84.8

Q ss_pred             ccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC----------------C
Q 028437           15 PAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------R   78 (209)
Q Consensus        15 ~~~~~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~----------------~   78 (209)
                      |.-..+..++..+|.+|+|+|. |+||..++..|++.|+  +|+.+|+++.  .+..|+....                .
T Consensus         8 ~~~~~~~~p~~~~m~~IaViGl-GYVGLp~A~~~A~~G~--~V~g~Did~~--kV~~ln~G~~pi~Epgl~ell~~~~~~   82 (444)
T 3vtf_A            8 HHHSSGLVPRGSHMASLSVLGL-GYVGVVHAVGFALLGH--RVVGYDVNPS--IVERLRAGRPHIYEPGLEEALGRALSS   82 (444)
T ss_dssp             -----CCCCTTCCCCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHT
T ss_pred             ccccCCcCCCCCCCCEEEEEcc-CHHHHHHHHHHHhCCC--cEEEEECCHH--HHHHHHCCCCCCCCCCHHHHHHHHHHc
Confidence            4556677888778889999999 9999999999999999  9999999853  2222222110                1


Q ss_pred             cceeEeecCCchhhhcCCCCEEEEcCCCCCCCCCC-hhHHHHHHHHHHHHHHHHHHhhCCCeEEEE-ecCCCCCcHHHHH
Q 028437           79 SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVNSTVPIAA  156 (209)
Q Consensus        79 ~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~~~g~~-r~~~~~~N~~~~~~i~~~i~~~~p~~~viv-~snP~~~~~~i~~  156 (209)
                      .++..   +++.++++++||++|++++.|..+... ...++.   ...+.+++.++..++...+++ .|-|++++--++.
T Consensus        83 g~l~~---tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~---~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~  156 (444)
T 3vtf_A           83 GRLSF---AESAEEAVAATDATFIAVGTPPAPDGSADLRYVE---AAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVA  156 (444)
T ss_dssp             TCEEE---CSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHH---HHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHH
T ss_pred             CCeeE---EcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHH---HHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHH
Confidence            12332   567788999999999999988654322 223333   334666666665554444433 3567765433333


Q ss_pred             HHH
Q 028437          157 EVF  159 (209)
Q Consensus       157 ~~~  159 (209)
                      ..+
T Consensus       157 ~~l  159 (444)
T 3vtf_A          157 RAV  159 (444)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            343

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=98.76  E-value=6.9e-09  Score=84.89  Aligned_cols=102  Identities=19%  Similarity=0.226  Sum_probs=71.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCC--CCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED--SDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~--aD~Vi~~ag~  106 (209)
                      |||+|+||+|++|++++..|++ |+  +|+++++++...     ..  ...+   +...+++++++++  +|+||++||.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~--~V~~~~r~~~~~-----~~--~~~D---l~~~~~~~~~~~~~~~d~vi~~a~~   67 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RH--EVIKVYNSSEIQ-----GG--YKLD---LTDFPRLEDFIIKKRPDVIINAAAM   67 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TS--CEEEEESSSCCT-----TC--EECC---TTSHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CC--eEEEecCCCcCC-----CC--ceec---cCCHHHHHHHHHhcCCCEEEECCcc
Confidence            5899999999999999999995 77  999999965211     00  0001   1111235566665  9999999986


Q ss_pred             CCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       107 ~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ....  ..+..+.+..|+....++++++.+..  ++++++|
T Consensus        68 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~iv~~S  106 (273)
T 2ggs_A           68 TDVDKCEIEKEKAYKINAEAVRHIVRAGKVID--SYIVHIS  106 (273)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             cChhhhhhCHHHHHHHhHHHHHHHHHHHHHhC--CeEEEEe
Confidence            5311  12455678889999999999998754  3677765

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=98.76  E-value=2.6e-08  Score=85.96  Aligned_cols=114  Identities=15%  Similarity=0.018  Sum_probs=74.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHH-hCCCccEEEEEecCCch----------hHH----HhhcCCCCCcc---eeEee----c
Q 028437           29 RKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTP----------GVA----ADVGHINTRSE---VAGYM----G   86 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~-~~g~~~ev~l~D~~~~~----------~~~----~dl~~~~~~~~---v~~~~----~   86 (209)
                      |+|+||||+|++|++++..|+ +.|+  +|+++++....          ...    .++........   +..+.    .
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   80 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence            599999999999999999999 9998  99999986421          111    11111000001   22211    1


Q ss_pred             CCchhhhcC--C-CCEEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           87 NDQLGQALE--D-SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        87 ~~d~~~a~~--~-aD~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ..+++++++  + +|+|||+|+.....  ..+..+++..|+..+.++++++.+... .++|++|
T Consensus        81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~-~~iv~~S  143 (397)
T 1gy8_A           81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKC-DKIIFSS  143 (397)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEEE
T ss_pred             HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCC-CEEEEEC
Confidence            123455666  6 99999999865311  123456788999999999999987643 3566665

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=98.75  E-value=1e-08  Score=87.34  Aligned_cols=100  Identities=16%  Similarity=0.072  Sum_probs=66.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHH---HhhcCCCCCcceeEeecCCchhhhcC--CCCEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVA---ADVGHINTRSEVAGYMGNDQLGQALE--DSDVV  100 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~---~dl~~~~~~~~v~~~~~~~d~~~a~~--~aD~V  100 (209)
                      +|+|+|+||+|++|++++..|++.|+  +|+++++++  .....   .++..........++...+++.++++  ++|+|
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V   87 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR--PTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIV   87 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEE
Confidence            46899999999999999999999998  999999965  11111   12222111100000111234677888  99999


Q ss_pred             EEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEE
Q 028437          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN  142 (209)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~vi  142 (209)
                      |++++..             |+...+++++++++...-.+++
T Consensus        88 i~~a~~~-------------n~~~~~~l~~aa~~~g~v~~~v  116 (346)
T 3i6i_A           88 VSTVGGE-------------SILDQIALVKAMKAVGTIKRFL  116 (346)
T ss_dssp             EECCCGG-------------GGGGHHHHHHHHHHHCCCSEEE
T ss_pred             EECCchh-------------hHHHHHHHHHHHHHcCCceEEe
Confidence            9998752             6667788999998876233444

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=98.74  E-value=2.2e-08  Score=89.87  Aligned_cols=115  Identities=16%  Similarity=0.116  Sum_probs=73.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-----HHHhhcCC-------CCCcceeEee----cCC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-----VAADVGHI-------NTRSEVAGYM----GND   88 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-----~~~dl~~~-------~~~~~v~~~~----~~~   88 (209)
                      +.++|+|+|+||+|++|++++..|...|+  +|+++++.+...     ....+...       .....+..+.    ...
T Consensus       147 ~~~~~~VLVTGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~  224 (508)
T 4f6l_B          147 HRPLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMD  224 (508)
T ss_dssp             BCCCEEEEESCTTSHHHHHHHHHTBTTEE--EEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCS
T ss_pred             cCCCCeEEEECCccchHHHHHHHHHhcCC--EEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccc
Confidence            34568999999999999999999988888  999999975311     00111100       0011222221    112


Q ss_pred             chhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        89 d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ++. +..++|+||++|+... ...+..++...|+..++++++.+.+  ...+++++|
T Consensus       225 ~l~-~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~--~~~~~v~iS  277 (508)
T 4f6l_B          225 DVV-LPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVS  277 (508)
T ss_dssp             SCC-CSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT--TTCEEEEEE
T ss_pred             cCC-CccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHh--CCCcEEEeC
Confidence            333 6789999999998653 2223456678899999999999987  335666665

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=98.73  E-value=1.2e-08  Score=84.90  Aligned_cols=100  Identities=19%  Similarity=0.117  Sum_probs=64.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch----hHH---HhhcCCCCCccee-EeecCCchhhhcCCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP----GVA---ADVGHINTRSEVA-GYMGNDQLGQALEDSD   98 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~----~~~---~dl~~~~~~~~v~-~~~~~~d~~~a~~~aD   98 (209)
                      .+++|+|+||+|++|++++..|++.|+  +|++++++...    ...   ..+...... .+. ++...+++.++++++|
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~-~v~~D~~d~~~l~~~~~~~d   79 (308)
T 1qyc_A            3 SRSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKASGAN-IVHGSIDDHASLVEAVKNVD   79 (308)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHTTTCE-EECCCTTCHHHHHHHHHTCS
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCcccccCHHHHHHHHHHHhCCCE-EEEeccCCHHHHHHHHcCCC
Confidence            357899999999999999999999998  99999997421    111   122222111 000 0111234678899999


Q ss_pred             EEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEE
Q 028437           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN  142 (209)
Q Consensus        99 ~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~vi  142 (209)
                      +||++++...             +...+++++++++.+.-.++|
T Consensus        80 ~vi~~a~~~~-------------~~~~~~l~~aa~~~g~v~~~v  110 (308)
T 1qyc_A           80 VVISTVGSLQ-------------IESQVNIIKAIKEVGTVKRFF  110 (308)
T ss_dssp             EEEECCCGGG-------------SGGGHHHHHHHHHHCCCSEEE
T ss_pred             EEEECCcchh-------------hhhHHHHHHHHHhcCCCceEe
Confidence            9999987532             223467778887765223444

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=98.72  E-value=3.5e-08  Score=84.79  Aligned_cols=105  Identities=18%  Similarity=0.114  Sum_probs=70.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee-----cCCchhhhcCCCCEEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-----GNDQLGQALEDSDVVII  102 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~-----~~~d~~~a~~~aD~Vi~  102 (209)
                      +|+|+|+||+|++|++++..|++.|+  +|+++++++......++....   .+..+.     ..+++.++++++|.||+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~l~~~~---~v~~v~~D~l~d~~~l~~~~~~~d~Vi~   79 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAIP---NVTLFQGPLLNNVPLMDTLFEGAHLAFI   79 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTST---TEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCChhhHHHHhhcC---CcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999998  999999975432222333211   111111     12246778999999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      +++...   .      ..|... +++++++++...-.++|++|..
T Consensus        80 ~a~~~~---~------~~~~~~-~~l~~aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           80 NTTSQA---G------DEIAIG-KDLADAAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             CCCSTT---S------CHHHHH-HHHHHHHHHHSCCSEEEEEECC
T ss_pred             cCCCCC---c------HHHHHH-HHHHHHHHHcCCccEEEEeCCc
Confidence            876431   1      225544 8888988876523467777654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.71  E-value=9e-08  Score=85.26  Aligned_cols=107  Identities=18%  Similarity=0.207  Sum_probs=70.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC--CC--------------CcceeEeecCCchhh
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--NT--------------RSEVAGYMGNDQLGQ   92 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~--~~--------------~~~v~~~~~~~d~~~   92 (209)
                      |||+|+|+ |.+|..++..|++.|+  +|+++|+++.+.  ..+...  ..              ...+..   ++|+++
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~--~V~~~D~~~~~v--~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~---t~d~~e   74 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGA--NVRCIDTDRNKI--EQLNSGTIPIYEPGLEKMIARNVKAGRLRF---GTEIEQ   74 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTCSCCCSTTHHHHHHHHHHTTSEEE---ESCHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCC--EEEEEECCHHHH--HHHHcCCCcccCCCHHHHHHhhcccCcEEE---ECCHHH
Confidence            79999999 9999999999999999  999999985321  112111  00              112332   457888


Q ss_pred             hcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEec-CCCC
Q 028437           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS-NPVN  149 (209)
Q Consensus        93 a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~s-nP~~  149 (209)
                      ++++||+||++++.+..+..      ..++..+.++++.+.++. ++..++..| -|.+
T Consensus        75 a~~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pg  127 (450)
T 3gg2_A           75 AVPEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKSTVPVG  127 (450)
T ss_dssp             HGGGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTT
T ss_pred             HHhcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCc
Confidence            89999999999887754332      123445566666666665 444444443 3444

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.71  E-value=7.5e-08  Score=85.28  Aligned_cols=118  Identities=17%  Similarity=0.223  Sum_probs=67.7

Q ss_pred             ccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC--------------CcceeEe
Q 028437           19 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--------------RSEVAGY   84 (209)
Q Consensus        19 ~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~--------------~~~v~~~   84 (209)
                      ++...+...+|||+|+|+ |++|..++..|++ |+  +|+++|+++.+  ...+.....              ...+.  
T Consensus        27 ~~~~~r~~~~mkIaVIGl-G~mG~~lA~~La~-G~--~V~~~D~~~~~--v~~l~~g~~~i~e~~l~~ll~~~~~~l~--   98 (432)
T 3pid_A           27 GQQMGRGSEFMKITISGT-GYVGLSNGVLIAQ-NH--EVVALDIVQAK--VDMLNQKISPIVDKEIQEYLAEKPLNFR--   98 (432)
T ss_dssp             --------CCCEEEEECC-SHHHHHHHHHHHT-TS--EEEEECSCHHH--HHHHHTTCCSSCCHHHHHHHHHSCCCEE--
T ss_pred             CcccccccCCCEEEEECc-CHHHHHHHHHHHc-CC--eEEEEecCHHH--hhHHhccCCccccccHHHHHhhccCCeE--
Confidence            345556667789999999 9999999999988 88  99999998532  222222110              01222  


Q ss_pred             ecCCchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEe-cCCCCC
Q 028437           85 MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNS  150 (209)
Q Consensus        85 ~~~~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~-snP~~~  150 (209)
                       .++|+++++++||+||++...+..+....     -++..+++.++.+.+..|...++.. |.|+++
T Consensus        99 -~ttd~~ea~~~aDvViiaVPt~~~~~~~~-----~Dl~~V~~v~~~i~~l~~g~iVV~~STv~pgt  159 (432)
T 3pid_A           99 -ATTDKHDAYRNADYVIIATPTDYDPKTNY-----FNTSTVEAVIRDVTEINPNAVMIIKSTIPVGF  159 (432)
T ss_dssp             -EESCHHHHHTTCSEEEECCCCEEETTTTE-----EECHHHHHHHHHHHHHCTTSEEEECSCCCTTH
T ss_pred             -EEcCHHHHHhCCCEEEEeCCCcccccccc-----ccHHHHHHHHHHHHhcCCCcEEEEeCCCChHH
Confidence             24678899999999999965442111101     1123334444444444566655544 456653

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=98.69  E-value=5.1e-08  Score=90.74  Aligned_cols=115  Identities=17%  Similarity=0.093  Sum_probs=75.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhh---cCCCCCccee-EeecCCchhhhcC--CCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADV---GHINTRSEVA-GYMGNDQLGQALE--DSD   98 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl---~~~~~~~~v~-~~~~~~d~~~a~~--~aD   98 (209)
                      ++|+|+|+||+|++|++++..|++.|+  +|+++++....  ....++   ...... .+. ++...++++++++  ++|
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~v~-~v~~Dl~d~~~l~~~~~~~~~D   86 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTKHHIP-FYEVDLCDRKGLEKVFKEYKID   86 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHTSCCC-EEECCTTCHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCcchHHHHHHHhhccCCceE-EEEcCCCCHHHHHHHHHhCCCC
Confidence            346999999999999999999999998  99999986421  111111   111111 011 0111123556676  899


Q ss_pred             EEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        99 ~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +||++|+.....  .....+++..|+..+.++++.+++... .++|++|
T Consensus        87 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~-~~iV~~S  134 (699)
T 1z45_A           87 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNV-SKFVFSS  134 (699)
T ss_dssp             EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTC-CEEEEEE
T ss_pred             EEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEEC
Confidence            999999865311  112346788999999999999988653 3566665

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=98.68  E-value=2.7e-08  Score=83.55  Aligned_cols=93  Identities=15%  Similarity=0.116  Sum_probs=61.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-hhH-HHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGV-AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~-~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ++|+|+||+|++|++++..|++.|+  +|+++++++. ... ..++.........-++...+++.++++++|+||++++.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~   89 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH--PTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAF   89 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC--cEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence            4899999999999999999999998  9999999752 211 11222211110000111123567889999999999875


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhC
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~  136 (209)
                      ..             +...+++++++++..
T Consensus        90 ~~-------------~~~~~~l~~aa~~~g  106 (318)
T 2r6j_A           90 PQ-------------ILDQFKILEAIKVAG  106 (318)
T ss_dssp             GG-------------STTHHHHHHHHHHHC
T ss_pred             hh-------------hHHHHHHHHHHHhcC
Confidence            32             233467778887765

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=98.67  E-value=1.6e-08  Score=84.51  Aligned_cols=105  Identities=19%  Similarity=0.214  Sum_probs=71.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhC--CCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhcC--CCCEEEEcC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQALE--DSDVVIIPA  104 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~--g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~--~aD~Vi~~a  104 (209)
                      ||+|+||+|++|++++..|++.  |+  +|+++++......     ...   .+. ++...++++++++  ++|+||++|
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~-----~~~---~~~~D~~d~~~~~~~~~~~~~d~vih~a   70 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK--NVIASDIVQRDTG-----GIK---FITLDVSNRDEIDRAVEKYSIDAIFHLA   70 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG--GEEEEESSCCCCT-----TCC---EEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC--EEEEecCCCcccc-----Cce---EEEecCCCHHHHHHHHhhcCCcEEEECC
Confidence            5899999999999999999987  77  8999988542111     000   000 0111123556676  899999999


Q ss_pred             CCCCCCC-CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          105 GVPRKPG-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       105 g~~~~~g-~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +...... .+..+.+..|+..+.++++++.+... .++|++|
T Consensus        71 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~~v~~S  111 (317)
T 3ajr_A           71 GILSAKGEKDPALAYKVNMNGTYNILEAAKQHRV-EKVVIPS  111 (317)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEEE
T ss_pred             cccCCccccChHHHhhhhhHHHHHHHHHHHHcCC-CEEEEec
Confidence            8642111 23456788999999999999987643 3566665

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=98.67  E-value=5.9e-07  Score=72.99  Aligned_cols=116  Identities=16%  Similarity=0.164  Sum_probs=70.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhhc-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQAL-------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-------   94 (209)
                      .++++||||+|.+|.+++..|++.|.  +|+++|+++..  ....++.....  .+..+. +   .++.++++       
T Consensus         9 ~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            9 NKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVADGG--TAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999999  99999997521  12222322111  111111 1   11222333       


Q ss_pred             CCCCEEEEcCCCCC--C----CCCC---hhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCC
Q 028437           95 EDSDVVIIPAGVPR--K----PGMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~--~----~g~~---r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~snP~  148 (209)
                      ...|++|++||...  .    ...+   ..+.+..|+..    ++.+.+.+.+. +.++++++|...
T Consensus        85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~  150 (253)
T 3qiv_A           85 GGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKR-GGGAIVNQSSTA  150 (253)
T ss_dssp             SCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECC--
T ss_pred             CCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCEEEEECCcc
Confidence            38899999998731  1    1122   23456778877    55555555554 356788887543

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=98.67  E-value=1.9e-08  Score=79.06  Aligned_cols=103  Identities=14%  Similarity=0.178  Sum_probs=69.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC---CCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~---~aD~Vi~~a  104 (209)
                      +|||+|+||+|++|++++..|+ +|+  +|+++++++. ....|+.+            .++++++++   ..|+||++|
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~-~g~--~V~~~~r~~~-~~~~D~~~------------~~~~~~~~~~~~~~d~vi~~a   66 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE-KKA--EVITAGRHSG-DVTVDITN------------IDSIKKMYEQVGKVDAIVSAT   66 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT-TTS--EEEEEESSSS-SEECCTTC------------HHHHHHHHHHHCCEEEEEECC
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH-CCC--eEEEEecCcc-ceeeecCC------------HHHHHHHHHHhCCCCEEEECC
Confidence            4689999999999999999999 898  9999999642 00111111            112334444   489999999


Q ss_pred             CCCCCCC---CCh---hHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecC
Q 028437          105 GVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKYCP-NAIVNMISN  146 (209)
Q Consensus       105 g~~~~~g---~~r---~~~~~~N~~~~~~i~~~i~~~~p-~~~viv~sn  146 (209)
                      |......   .+.   .+.+..|+....++++.+.+.-. ..+++++|.
T Consensus        67 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  115 (202)
T 3d7l_A           67 GSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTG  115 (202)
T ss_dssp             CCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECC
T ss_pred             CCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            9653221   122   34567888888888888876532 257777764

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=98.67  E-value=2.5e-08  Score=83.73  Aligned_cols=93  Identities=15%  Similarity=0.175  Sum_probs=61.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC-c---hhHHH---hhcCCCCCccee-EeecCCchhhhcCCCCE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T---PGVAA---DVGHINTRSEVA-GYMGNDQLGQALEDSDV   99 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~-~---~~~~~---dl~~~~~~~~v~-~~~~~~d~~~a~~~aD~   99 (209)
                      +|+|+|+||+|++|++++..|++.|+  +|+++++++ .   .....   ++...... .+. ++...+++.++++++|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~-~v~~D~~d~~~l~~a~~~~d~   80 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPLTPDSTPSSVQLREEFRSMGVT-IIEGEMEEHEKMVSVLKQVDI   80 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHHHHHHHHTTCE-EEECCTTCHHHHHHHHTTCSE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCcccccChHHHHHHHHhhcCCcE-EEEecCCCHHHHHHHHcCCCE
Confidence            46899999999999999999999998  999999975 1   11111   12111111 011 11112347788999999


Q ss_pred             EEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC
Q 028437          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (209)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~  136 (209)
                      ||++++...             +...+++++++.+..
T Consensus        81 vi~~a~~~~-------------~~~~~~l~~aa~~~g  104 (321)
T 3c1o_A           81 VISALPFPM-------------ISSQIHIINAIKAAG  104 (321)
T ss_dssp             EEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred             EEECCCccc-------------hhhHHHHHHHHHHhC
Confidence            999987532             233467777777765

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.66  E-value=1.4e-07  Score=83.55  Aligned_cols=119  Identities=17%  Similarity=0.260  Sum_probs=72.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC----------------CcceeEeecCCchhh
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLGQ   92 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~----------------~~~v~~~~~~~d~~~   92 (209)
                      |||+|+|+ |.+|..++..|++.|+  +|+++|+++.+  ...+.....                ...+..   ++++++
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~--~V~~~d~~~~~--~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~---t~~~~~   72 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTK--IDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKK   72 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHhCCCCCcCCCCHHHHHHhhcccCceEE---eCCHHH
Confidence            59999998 9999999999999999  99999997532  222222100                012322   457777


Q ss_pred             hcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhh-CC---CeEEEEe-cCCCCCcHHHHHHHHHH
Q 028437           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CP---NAIVNMI-SNPVNSTVPIAAEVFKK  161 (209)
Q Consensus        93 a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~-~p---~~~viv~-snP~~~~~~i~~~~~~~  161 (209)
                      ++++||+||++++.+......      .++..+.+.++.+.++ .+   +..++.. |+|++.+.-.+...+.+
T Consensus        73 ~~~~aDvviiaVptp~~~~~~------~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           73 AVLDSDVSFICVGTPSKKNGD------LDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             HHHTCSEEEECCCCCBCTTSS------BCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             HhccCCEEEEEcCCCcccCCC------cchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            899999999998766532211      1223334444555443 24   5555554 67777422233444433

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=98.66  E-value=2.8e-08  Score=81.82  Aligned_cols=100  Identities=12%  Similarity=0.113  Sum_probs=64.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhC--CCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhcCCCCEEEEcCCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~--g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ||+|+||+|++|++++..|++.  |+  +|+++++++....  ++...... .+. ++...++++++++++|+||++++.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~~~~~~~~-~~~~D~~d~~~~~~~~~~~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS--QIVAIVRNPAKAQ--ALAAQGIT-VRQADYGDEAALTSALQGVEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTCH--HHHHTTCE-EEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc--eEEEEEcChHhhh--hhhcCCCe-EEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            5899999999999999999998  87  9999999753221  11111110 000 111123467889999999999875


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ..          ..|+..++++++++++... .+++++|
T Consensus        76 ~~----------~~~~~~~~~l~~a~~~~~~-~~~v~~S  103 (286)
T 2zcu_A           76 EV----------GQRAPQHRNVINAAKAAGV-KFIAYTS  103 (286)
T ss_dssp             ----------------CHHHHHHHHHHHHTC-CEEEEEE
T ss_pred             Cc----------hHHHHHHHHHHHHHHHcCC-CEEEEEC
Confidence            31          1467788999999987653 3566665

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.65  E-value=1.3e-07  Score=84.92  Aligned_cols=124  Identities=18%  Similarity=0.275  Sum_probs=76.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC--CCccEEEEEecCCchhHHHhhcCCCC---------------CcceeEeecCCch
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINT---------------RSEVAGYMGNDQL   90 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~--g~~~ev~l~D~~~~~~~~~dl~~~~~---------------~~~v~~~~~~~d~   90 (209)
                      +|||+|+|+ |.+|..++..|++.  |+  +|+++|+++.  ....+.....               ...+..   ++++
T Consensus         9 ~mkI~VIG~-G~vG~~~A~~La~~g~g~--~V~~~D~~~~--~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~---t~~~   80 (481)
T 2o3j_A            9 VSKVVCVGA-GYVGGPTCAMIAHKCPHI--TVTVVDMNTA--KIAEWNSDKLPIYEPGLDEIVFAARGRNLFF---SSDI   80 (481)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHCTTS--EEEEECSCHH--HHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCC--EEEEEECCHH--HHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE---ECCH
Confidence            479999999 99999999999987  67  9999999753  2222332110               011222   3566


Q ss_pred             hhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC-CeEEEEe-cCCCCCcHHHHHHHHHH
Q 028437           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMI-SNPVNSTVPIAAEVFKK  161 (209)
Q Consensus        91 ~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p-~~~viv~-snP~~~~~~i~~~~~~~  161 (209)
                      ++++++||+||++++.|.+.+.++.+ ...++..+.+.++.+.++.+ +..++.. |+|++..- .+...+.+
T Consensus        81 ~~~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~-~l~~~l~~  151 (481)
T 2o3j_A           81 PKAIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAE-SIGCILRE  151 (481)
T ss_dssp             HHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHH-HHHHHHHH
T ss_pred             HHHhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHH-HHHHHHHH
Confidence            78899999999998877543221111 11223445666677776654 4444433 67776432 23344443

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=98.65  E-value=3.8e-08  Score=81.88  Aligned_cols=93  Identities=17%  Similarity=0.151  Sum_probs=61.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC-------chhH-HHhhcCCCCCccee-EeecCCchhhhcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-------TPGV-AADVGHINTRSEVA-GYMGNDQLGQALEDSD   98 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~-------~~~~-~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aD   98 (209)
                      +++|+|+||+|++|++++..|++.|+  +|+++++++       .+.. ..++...... .+. ++...+++.++++++|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~-~v~~D~~d~~~l~~~~~~~d   78 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKTITAANPETKEELIDNYQSLGVI-LLEGDINDHETLVKAIKQVD   78 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHHHHHHHHTTCE-EEECCTTCHHHHHHHHTTCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCCcccCChHHHHHHHHHHHhCCCE-EEEeCCCCHHHHHHHHhCCC
Confidence            46899999999999999999999998  999999975       1111 1122211111 011 1111234678899999


Q ss_pred             EEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC
Q 028437           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (209)
Q Consensus        99 ~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~  136 (209)
                      +||++++...             +...+++++++++.+
T Consensus        79 ~vi~~a~~~~-------------~~~~~~l~~aa~~~g  103 (307)
T 2gas_A           79 IVICAAGRLL-------------IEDQVKIIKAIKEAG  103 (307)
T ss_dssp             EEEECSSSSC-------------GGGHHHHHHHHHHHC
T ss_pred             EEEECCcccc-------------cccHHHHHHHHHhcC
Confidence            9999987642             223466777777765

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=98.64  E-value=3.1e-07  Score=75.60  Aligned_cols=96  Identities=11%  Similarity=0.084  Sum_probs=63.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee-cCCchhhhcCCCCEEEEcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      +|||+|+|| |++|++++..|++.|+  +|+.+++++....  .+....    ++.+. +-.|++  ++++|+||++|+.
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~~----~~~~~~D~~d~~--~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGW--RIIGTSRNPDQME--AIRASG----AEPLLWPGEEPS--LDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTC--EEEEEESCGGGHH--HHHHTT----EEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCC--EEEEEEcChhhhh--hHhhCC----CeEEEecccccc--cCCCCEEEECCCc
Confidence            479999998 9999999999999999  9999999753221  122111    11111 122443  8899999999986


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEec
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~s  145 (209)
                      ....           .+..+++++.+++.+ ...++|++|
T Consensus        74 ~~~~-----------~~~~~~l~~a~~~~~~~~~~~v~~S  102 (286)
T 3ius_A           74 DSGG-----------DPVLAALGDQIAARAAQFRWVGYLS  102 (286)
T ss_dssp             BTTB-----------CHHHHHHHHHHHHTGGGCSEEEEEE
T ss_pred             cccc-----------cHHHHHHHHHHHhhcCCceEEEEee
Confidence            4321           123467778887742 334677665

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.63  E-value=5.5e-07  Score=80.38  Aligned_cols=101  Identities=16%  Similarity=0.202  Sum_probs=66.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-H-Hh-------------hcCCCCCc-ceeEeecCCch
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-A-AD-------------VGHINTRS-EVAGYMGNDQL   90 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-~-~d-------------l~~~~~~~-~v~~~~~~~d~   90 (209)
                      +++||+|+|+ |.+|..++..|+..|+  +|+++|+++.... . ..             +....... ....   ++++
T Consensus        36 ~~~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i---~~~~  109 (463)
T 1zcj_A           36 PVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSST  109 (463)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE---ESCG
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh---cCCH
Confidence            4579999999 9999999999999999  9999999752110 0 00             11111111 1121   3465


Q ss_pred             hhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCC
Q 028437           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS  150 (209)
Q Consensus        91 ~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p-~~~viv~snP~~~  150 (209)
                       +++++||+||.++.              ++....+++++.+.++.+ ++++  ++|.+..
T Consensus       110 -~~~~~aDlVIeaVp--------------e~~~~k~~v~~~l~~~~~~~~ii--~snTs~~  153 (463)
T 1zcj_A          110 -KELSTVDLVVEAVF--------------EDMNLKKKVFAELSALCKPGAFL--CTNTSAL  153 (463)
T ss_dssp             -GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSS
T ss_pred             -HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCc
Confidence             67899999999962              134555667777777764 5543  4677664

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.63  E-value=3e-07  Score=79.47  Aligned_cols=101  Identities=15%  Similarity=0.187  Sum_probs=68.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHH-Hhhc-------CCCCCcceeEeecCCchhhhcCCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-ADVG-------HINTRSEVAGYMGNDQLGQALEDSD   98 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~-~dl~-------~~~~~~~v~~~~~~~d~~~a~~~aD   98 (209)
                      .+|||+|+|+ |.+|..++..|++.|+  +|.++|+++..... .+..       ....+..+..   ++|++++++++|
T Consensus        28 ~~mkI~VIGa-G~mG~alA~~La~~G~--~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~---t~d~~ea~~~aD  101 (356)
T 3k96_A           28 FKHPIAILGA-GSWGTALALVLARKGQ--KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA---YCDLKASLEGVT  101 (356)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE---ESCHHHHHTTCC
T ss_pred             cCCeEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE---ECCHHHHHhcCC
Confidence            3579999999 9999999999999999  99999997532111 1110       0111122332   357788999999


Q ss_pred             EEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 028437           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (209)
Q Consensus        99 ~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~  149 (209)
                      +||++...                ..++++++.+..+. ++..++.++|...
T Consensus       102 vVilaVp~----------------~~~~~vl~~i~~~l~~~~ivvs~~kGi~  137 (356)
T 3k96_A          102 DILIVVPS----------------FAFHEVITRMKPLIDAKTRIAWGTKGLA  137 (356)
T ss_dssp             EEEECCCH----------------HHHHHHHHHHGGGCCTTCEEEECCCSCB
T ss_pred             EEEECCCH----------------HHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            99998521                23566677777665 4667777777544

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=98.63  E-value=1.9e-07  Score=75.26  Aligned_cols=114  Identities=20%  Similarity=0.191  Sum_probs=70.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH--HHhhcCCCCCccee-EeecCCchhhhcC---CCCEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVA-GYMGNDQLGQALE---DSDVVI  101 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~--~~dl~~~~~~~~v~-~~~~~~d~~~a~~---~aD~Vi  101 (209)
                      .++|+|+||+|++|++++..|+++|+  +|+++++++....  ..++....   .+. ++...++++++++   ..|+||
T Consensus         7 ~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~D~~~~~~~~~~~~~~~~id~vi   81 (244)
T 1cyd_A            7 GLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGIE---PVCVDLGDWDATEKALGGIGPVDLLV   81 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE---EEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhccCCC---cEEecCCCHHHHHHHHHHcCCCCEEE
Confidence            35899999999999999999999998  9999999742111  11111110   010 0111123444454   479999


Q ss_pred             EcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh----CCCeEEEEecC
Q 028437          102 IPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN  146 (209)
Q Consensus       102 ~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~----~p~~~viv~sn  146 (209)
                      ++||......   .+   ....+..|+.....+.+.+.+.    ...+++|++|.
T Consensus        82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS  136 (244)
T 1cyd_A           82 NNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS  136 (244)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             ECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcc
Confidence            9999653211   12   2345677888766666665543    32567888865

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.63  E-value=7.6e-08  Score=80.92  Aligned_cols=101  Identities=19%  Similarity=0.269  Sum_probs=65.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHH--H-------hhcCCC-CC-------------cceeEe
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA--A-------DVGHIN-TR-------------SEVAGY   84 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~--~-------dl~~~~-~~-------------~~v~~~   84 (209)
                      ++||+|+|+ |.+|..++..|++.|+  +|+++|+++.....  .       .+.... ..             ..+.. 
T Consensus        15 ~~~I~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~-   90 (302)
T 1f0y_A           15 VKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-   90 (302)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE-
Confidence            468999999 9999999999999999  99999997521110  0       000010 00             02332 


Q ss_pred             ecCCchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCC
Q 028437           85 MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS  150 (209)
Q Consensus        85 ~~~~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p-~~~viv~snP~~~  150 (209)
                        ++++++++++||+||.++..              +....+.+++.+.++.+ +.+  ++||....
T Consensus        91 --~~~~~~~~~~aD~Vi~avp~--------------~~~~~~~v~~~l~~~~~~~~i--v~s~ts~i  139 (302)
T 1f0y_A           91 --STDAASVVHSTDLVVEAIVE--------------NLKVKNELFKRLDKFAAEHTI--FASNTSSL  139 (302)
T ss_dssp             --ESCHHHHTTSCSEEEECCCS--------------CHHHHHHHHHHHTTTSCTTCE--EEECCSSS
T ss_pred             --ecCHHHhhcCCCEEEEcCcC--------------cHHHHHHHHHHHHhhCCCCeE--EEECCCCC
Confidence              34677789999999999621              22344566677777664 553  35666553

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=98.63  E-value=9.1e-08  Score=78.06  Aligned_cols=118  Identities=15%  Similarity=0.105  Sum_probs=75.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEecCCch--hHHHhhcCCCCCcceeE--eecCCchhhhcC------
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANTP--GVAADVGHINTRSEVAG--YMGNDQLGQALE------   95 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~-~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~------   95 (209)
                      +.++|+|+||+|++|++++..|++ .|+  +|++++++...  ....++...........  +...++++++++      
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY   80 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence            346899999999999999999999 898  99999997421  12223322111111111  100112333333      


Q ss_pred             -CCCEEEEcCCCCCCCCC------ChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           96 -DSDVVIIPAGVPRKPGM------TRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        96 -~aD~Vi~~ag~~~~~g~------~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                       +.|+||++||.......      +....+..|+.....+.+.+.+.. +.+++|++|.
T Consensus        81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence             78999999997542211      123457889999999999988764 3457887775

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=98.60  E-value=2.7e-07  Score=75.01  Aligned_cols=108  Identities=16%  Similarity=0.197  Sum_probs=72.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC----CCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE----DSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~----~aD~Vi~~a  104 (209)
                      ++|+||||+|++|.+++..|++.|+  +|++.++++.....    +  ...++..   .++++++++    ..|++|++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~----~--~~~Dl~~---~~~v~~~~~~~~~~id~lv~~A   70 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEVIA----D--LSTAEGR---KQAIADVLAKCSKGMDGLVLCA   70 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEEC----C--TTSHHHH---HHHHHHHHTTCTTCCSEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhhcc----c--cccCCCC---HHHHHHHHHHhCCCCCEEEECC
Confidence            4799999999999999999999998  99999997521110    0  1111111   112344443    459999999


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP~  148 (209)
                      |..... ....+.+..|+.....+.+.+.++   ...+++|++|...
T Consensus        71 g~~~~~-~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~  116 (257)
T 1fjh_A           71 GLGPQT-KVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVA  116 (257)
T ss_dssp             CCCTTC-SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred             CCCCCc-ccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChh
Confidence            976412 235667888888777777766543   2346788887543

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=98.60  E-value=2.1e-07  Score=75.67  Aligned_cols=115  Identities=18%  Similarity=0.260  Sum_probs=71.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhhc-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQAL-------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-------   94 (209)
                      .++|+|+||+|++|.+++..|+++|+  +|+++++++..  ....++.....  ++..+. +   .+++++++       
T Consensus        13 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           13 NRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRMEGH--DVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  99999997421  11222322111  121111 1   11233333       


Q ss_pred             CCCCEEEEcCCCCC-C-C--CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPR-K-P--GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~-~-~--g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      .+.|+||++||... . +  ..+   ..+.+..|+.....+++.+.++   ....+++++|.
T Consensus        89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  150 (260)
T 3awd_A           89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGS  150 (260)
T ss_dssp             SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEec
Confidence            37899999998753 1 1  122   2345677887777777666543   23567777764

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.59  E-value=3.5e-07  Score=80.22  Aligned_cols=108  Identities=18%  Similarity=0.248  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCC--------------cceeEeecCCchhhhc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR--------------SEVAGYMGNDQLGQAL   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~--------------~~v~~~~~~~d~~~a~   94 (209)
                      |||+|+|+ |.+|..++..|++ |+  +|+++|+++.  ....+.....+              ..+..   ++++++++
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~-G~--~V~~~d~~~~--~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~---t~~~~~~~   71 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL-QN--EVTIVDILPS--KVDKINNGLSPIQDEYIEYYLKSKQLSIKA---TLDSKAAY   71 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSCHH--HHHHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHhC-CC--EEEEEECCHH--HHHHHHcCCCCcCCCCHHHHHHhccCcEEE---eCCHHHHh
Confidence            59999999 9999999999998 88  9999999753  22222222110              11222   34667788


Q ss_pred             CCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEE-ecCCCCC
Q 028437           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVNS  150 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv-~snP~~~  150 (209)
                      ++||+||++...+...+..+.|     +..+.++++.+.+..++..++. .|||++.
T Consensus        72 ~~aDvviiavpt~~~~~~~~~d-----l~~v~~v~~~i~~l~~~~iVV~~ST~~~g~  123 (402)
T 1dlj_A           72 KEAELVIIATPTNYNSRINYFD-----TQHVETVIKEVLSVNSHATLIIKSTIPIGF  123 (402)
T ss_dssp             HHCSEEEECCCCCEETTTTEEC-----CHHHHHHHHHHHHHCSSCEEEECSCCCTTH
T ss_pred             cCCCEEEEecCCCcccCCCCcc-----HHHHHHHHHHHHhhCCCCEEEEeCCCCccH
Confidence            9999999998665322211112     1233444455544446666655 6899884

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=98.58  E-value=2.4e-07  Score=75.01  Aligned_cols=114  Identities=15%  Similarity=0.125  Sum_probs=68.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-cC---Cchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-GN---DQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~---~d~~~a~-------~   95 (209)
                      ++|+|+||+|++|.+++..|++.|.  +|+++++++..  ....++...   ..+..+. +.   +++++++       .
T Consensus         7 k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (251)
T 1zk4_A            7 KVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAFG   81 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            5899999999999999999999998  99999997421  112223221   1122111 11   1223333       3


Q ss_pred             CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVK----DLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~snP  147 (209)
                      ..|+||++||.....   ..+   ....+..|+....    .+++.+++.....+++++|..
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~  143 (251)
T 1zk4_A           82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI  143 (251)
T ss_dssp             SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence            589999999875321   122   2345677877444    444444443222678887754

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=98.58  E-value=5e-08  Score=79.73  Aligned_cols=109  Identities=15%  Similarity=0.211  Sum_probs=71.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchh-------hhcCCCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLG-------QALEDSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~-------~a~~~aD~Vi  101 (209)
                      ++|+|+||+|++|.+++..|++.|.  +|+++|+++.......+ ..    .+.   ..++.+       +.+...|++|
T Consensus        23 k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~-~~----d~~---d~~~v~~~~~~~~~~~g~iD~li   92 (251)
T 3orf_A           23 KNILVLGGSGALGAEVVKFFKSKSW--NTISIDFRENPNADHSF-TI----KDS---GEEEIKSVIEKINSKSIKVDTFV   92 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTSSEEE-EC----SCS---SHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCcccccccce-EE----EeC---CHHHHHHHHHHHHHHcCCCCEEE
Confidence            3899999999999999999999999  99999997532111000 00    000   011222       2234569999


Q ss_pred             EcCCCCCCC----CC---ChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437          102 IPAGVPRKP----GM---TRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus       102 ~~ag~~~~~----g~---~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                      ++||.....    ..   +....+..|+.....+.+.+.+.- +.+++|++|..
T Consensus        93 ~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  146 (251)
T 3orf_A           93 CAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGAS  146 (251)
T ss_dssp             ECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             ECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEech
Confidence            999975321    11   123456789988888888877654 34678888753

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=98.58  E-value=4.3e-07  Score=75.02  Aligned_cols=117  Identities=20%  Similarity=0.251  Sum_probs=73.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-cC---Cchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-GN---DQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~---~d~~~a~-------~   95 (209)
                      ++|+|+||+|++|..++..|++.|.  +|+++++++..  ....++........+..+. +-   +++++++       .
T Consensus        33 k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  110 (279)
T 1xg5_A           33 RLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS  110 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            4799999999999999999999998  99999997421  1122222211111222211 11   1223333       3


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHH----HHHHHHHHHhhCC-CeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCP-NAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~----~~~i~~~i~~~~p-~~~viv~snP  147 (209)
                      +.|+||++||......   .+   ....+..|+..    ++.+++.+++... .+++|++|..
T Consensus       111 ~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~  173 (279)
T 1xg5_A          111 GVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSM  173 (279)
T ss_dssp             CCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCG
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcCh
Confidence            7999999998753211   12   23456777777    7778888877653 4678877643

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=98.57  E-value=1.9e-07  Score=75.65  Aligned_cols=115  Identities=16%  Similarity=0.244  Sum_probs=71.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhcC------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQALE------   95 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~------   95 (209)
                      .++|+|+||+|++|.+++..|++.|+  +|+++++++..  ....++.....  .+..+.    ..++++++++      
T Consensus        11 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   86 (255)
T 1fmc_A           11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhCC--ceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999998  99999997421  11222321111  111111    1112334443      


Q ss_pred             -CCCEEEEcCCCCCCC--CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           96 -DSDVVIIPAGVPRKP--GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        96 -~aD~Vi~~ag~~~~~--g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                       +.|+||++||.....  ..+   ..+.+..|+....++.+.+.+.   ....+++++|.
T Consensus        87 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS  146 (255)
T 1fmc_A           87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITS  146 (255)
T ss_dssp             SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence             899999999875321  122   2345677888777766666432   23567777764

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=98.57  E-value=1.2e-07  Score=78.34  Aligned_cols=112  Identities=17%  Similarity=0.103  Sum_probs=71.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH--HHhhcCCCCCcceeEee-c---CCchhhhc-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYM-G---NDQLGQAL-------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~--~~dl~~~~~~~~v~~~~-~---~~d~~~a~-------   94 (209)
                      +++|+||||+|++|++++..|++.|+  +|++.+++.....  ..++..     .+..+. +   .+++++++       
T Consensus         5 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~~~~~~~~~~~~~   77 (281)
T 3m1a_A            5 AKVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRTEALDDLVAAYPD-----RAEAISLDVTDGERIDVVAADVLARY   77 (281)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHCTT-----TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhccC-----CceEEEeeCCCHHHHHHHHHHHHHhC
Confidence            45899999999999999999999998  9999999753211  111111     111111 1   11233333       


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCC
Q 028437           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      .+.|+||++||.....   ..+   ....+..|+..    ++.+.+.+++.. .+++|++|..
T Consensus        78 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~~sS~  139 (281)
T 3m1a_A           78 GRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG-SGSVVNISSF  139 (281)
T ss_dssp             SCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEcCc
Confidence            3789999999974311   122   23456778887    666777666543 4677777653

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.56  E-value=2.2e-07  Score=83.38  Aligned_cols=105  Identities=13%  Similarity=0.162  Sum_probs=69.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCC--C--------------CcceeEeecCCch
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--T--------------RSEVAGYMGNDQL   90 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~--~--------------~~~v~~~~~~~d~   90 (209)
                      -.|||+|+|+ |++|..++..|++.|+  +|+++|+++.  ....+....  .              ...+..   ++|+
T Consensus         7 ~~~~I~VIG~-G~vG~~lA~~la~~G~--~V~~~d~~~~--~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~---ttd~   78 (478)
T 2y0c_A            7 GSMNLTIIGS-GSVGLVTGACLADIGH--DVFCLDVDQA--KIDILNNGGVPIHEPGLKEVIARNRSAGRLRF---STDI   78 (478)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ECCH
T ss_pred             CCceEEEECc-CHHHHHHHHHHHhCCC--EEEEEECCHH--HHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE---ECCH
Confidence            4589999999 9999999999999999  9999999753  222222211  0              012222   4577


Q ss_pred             hhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEec
Q 028437           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (209)
Q Consensus        91 ~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~s  145 (209)
                      ++++++||+||++...|.....      .-++..++++++.+.++. ++..++..|
T Consensus        79 ~~a~~~aDvviiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~~~iVV~~S  128 (478)
T 2y0c_A           79 EAAVAHGDVQFIAVGTPPDEDG------SADLQYVLAAARNIGRYMTGFKVIVDKS  128 (478)
T ss_dssp             HHHHHHCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             HHHhhcCCEEEEEeCCCcccCC------CccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            7889999999999877653322      123345566666676665 455554443

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.56  E-value=4.4e-07  Score=81.39  Aligned_cols=116  Identities=16%  Similarity=0.163  Sum_probs=72.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEecCCc--hhHHHhhcCCC--C----------------CcceeE
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANT--PGVAADVGHIN--T----------------RSEVAG   83 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~-g~~~ev~l~D~~~~--~~~~~dl~~~~--~----------------~~~v~~   83 (209)
                      +.++|||+|+|+ |++|..++..|++. |+. +|+++|+++.  ...+..+....  .                ...+..
T Consensus        15 ~~~~mkIaVIGl-G~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~   92 (478)
T 3g79_A           15 RGPIKKIGVLGM-GYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC   92 (478)
T ss_dssp             HCSCCEEEEECC-STTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE
T ss_pred             cCCCCEEEEECc-CHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE
Confidence            346689999999 99999999999999 864 8999999864  11333444321  0                112332


Q ss_pred             eecCCchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-cCCCCC
Q 028437           84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNS  150 (209)
Q Consensus        84 ~~~~~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~-snP~~~  150 (209)
                         +++ .+++++||+||++++.+.....++    ..++..+...++.+.++. +...++.. |-|+++
T Consensus        93 ---ttd-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgt  153 (478)
T 3g79_A           93 ---TPD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLESTITPGT  153 (478)
T ss_dssp             ---ESC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTT
T ss_pred             ---eCc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHH
Confidence               456 688999999999988775433210    012344455556666554 44444443 345544

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=98.56  E-value=3.7e-07  Score=74.55  Aligned_cols=114  Identities=13%  Similarity=0.184  Sum_probs=71.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee----cCCchhhhcC-------CC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALE-------DS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~-------~a   97 (209)
                      ++++|+||+|++|.+++..|++.|.  +|++.++++......++.....  .+..+.    ..++++++++       +.
T Consensus         5 k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (255)
T 2q2v_A            5 KTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDPAPALAEIARHGV--KAVHHPADLSDVAQIEALFALAEREFGGV   80 (255)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHHTTSC--CEEEECCCTTSHHHHHHHHHHHHHHHSSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHhcCC--ceEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            5899999999999999999999998  9999999754222333432211  111111    1122344444       89


Q ss_pred             CEEEEcCCCCCCCC---CC---hhHHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 028437           98 DVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        98 D~Vi~~ag~~~~~g---~~---r~~~~~~N~~----~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      |++|++||......   .+   ....+..|+.    .++.+++.+++. ..+++|++|..
T Consensus        81 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS~  139 (255)
T 2q2v_A           81 DILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRAR-NWGRIINIASV  139 (255)
T ss_dssp             SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCG
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcCc
Confidence            99999999753211   12   2345677777    555566666553 34678887653

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=98.55  E-value=3.5e-07  Score=74.16  Aligned_cols=119  Identities=15%  Similarity=0.186  Sum_probs=71.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee--cCCchhhhc---CCCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM--GNDQLGQAL---EDSD   98 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~--~~~d~~~a~---~~aD   98 (209)
                      .+.++|+||||+|++|.+++..|++.|.  +|++.+++...  ....++....   .+....  ..++.++.+   .+.|
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~id   86 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALKDNY---TIEVCNLANKEECSNLISKTSNLD   86 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCSSE---EEEECCTTSHHHHHHHHHTCSCCS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhccCc---cEEEcCCCCHHHHHHHHHhcCCCC
Confidence            3446899999999999999999999998  99999997521  1122232211   111100  011222333   3789


Q ss_pred             EEEEcCCCCCCC------CCChhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCC
Q 028437           99 VVIIPAGVPRKP------GMTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVN  149 (209)
Q Consensus        99 ~Vi~~ag~~~~~------g~~r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP~~  149 (209)
                      ++|++||.....      ..+....+..|+.....+.+.+.+.   ...+++|++|....
T Consensus        87 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~  146 (249)
T 3f9i_A           87 ILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVG  146 (249)
T ss_dssp             EEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHh
Confidence            999999975311      1234556777877766666555332   24567888876543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=98.55  E-value=3e-07  Score=75.28  Aligned_cols=114  Identities=21%  Similarity=0.244  Sum_probs=70.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCC--CcceeEeecCCchhhhcC-------CC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINT--RSEVAGYMGNDQLGQALE-------DS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~-------~a   97 (209)
                      ++++||||+|++|.+++..|++.|.  +|++.|++...  ....++.....  ..++.   ..++.+++++       +.
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~---~~~~v~~~~~~~~~~~g~i   83 (259)
T 4e6p_A            9 KSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEIGPAAYAVQMDVT---RQDSIDAAIAATVEHAGGL   83 (259)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCTTEEEEECCTT---CHHHHHHHHHHHHHHSSSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCCceEEEeeCC---CHHHHHHHHHHHHHHcCCC
Confidence            5799999999999999999999999  99999997521  12223321110  00111   1112333333       89


Q ss_pred             CEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHH----hhCCCeEEEEecCC
Q 028437           98 DVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIA----KYCPNAIVNMISNP  147 (209)
Q Consensus        98 D~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~----~~~p~~~viv~snP  147 (209)
                      |++|++||......   .+   ....+..|+.....+.+.+.    +..+.+++|++|..
T Consensus        84 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  143 (259)
T 4e6p_A           84 DILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQ  143 (259)
T ss_dssp             CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECCh
Confidence            99999999753221   12   23456678776666555544    33346788888653

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=98.54  E-value=1.1e-06  Score=71.48  Aligned_cols=116  Identities=21%  Similarity=0.295  Sum_probs=72.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccE-EEEEecCCchhHHHhhcCCCCCcceeEee----cC-Cchhhhc-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSR-LALYDIANTPGVAADVGHINTRSEVAGYM----GN-DQLGQAL-------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~e-v~l~D~~~~~~~~~dl~~~~~~~~v~~~~----~~-~d~~~a~-------   94 (209)
                      .++++||||+|++|.+++..|+++|.  + |+++++++......++........+..+.    .. ++.++++       
T Consensus         5 ~k~vlVtGas~gIG~~~a~~l~~~G~--~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T 1sby_A            5 NKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence            35899999999999999999999998  6 89999875322222222111011121111    11 1222223       


Q ss_pred             CCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC------CCeEEEEecCC
Q 028437           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC------PNAIVNMISNP  147 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~------p~~~viv~snP  147 (209)
                      .+.|++|++||...  ..+....+..|+.....+.+.+.+.-      +.++++++|..
T Consensus        83 g~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~  139 (254)
T 1sby_A           83 KTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSV  139 (254)
T ss_dssp             SCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECch
Confidence            37899999999752  23455677888887777777665431      24678888653

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=98.54  E-value=4.6e-07  Score=73.12  Aligned_cols=116  Identities=18%  Similarity=0.226  Sum_probs=66.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-ecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhhcC-----
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQALE-----   95 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~-D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~~-----   95 (209)
                      .++|+|+||+|++|.+++..|+++|+  +|+++ ++++..  ....++....  .++..+. +   .++++++++     
T Consensus         5 ~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (247)
T 2hq1_A            5 GKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPASTSLDATAEEFKAAG--INVVVAKGDVKNPEDVENMVKTAMDA   80 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTCSHHHHHHHHHHHTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            35899999999999999999999998  99999 454321  1122222111  1111111 1   112333333     


Q ss_pred             --CCCEEEEcCCCCCCC------CCChhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           96 --DSDVVIIPAGVPRKP------GMTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        96 --~aD~Vi~~ag~~~~~------g~~r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                        +.|+||++||.....      ..+..+.+..|+.....+.+.+.+.   .+.+++|++|..
T Consensus        81 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  143 (247)
T 2hq1_A           81 FGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSI  143 (247)
T ss_dssp             HSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCh
Confidence              799999999875311      1223456778888766666655442   235678887754

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=98.54  E-value=8.4e-08  Score=77.74  Aligned_cols=114  Identities=13%  Similarity=0.112  Sum_probs=71.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhc---------CC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL---------ED   96 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~---------~~   96 (209)
                      .+.++|+|+||+|.+|.+++..|+++|+  +|+++++++..... ..  .....++..   .+++++++         .+
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~-~~--~~~~~D~~~---~~~v~~~~~~~~~~~~~g~   76 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEAS-AS--VIVKMTDSF---TEQADQVTAEVGKLLGDQK   76 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSS-EE--EECCCCSCH---HHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCChhhccC-Cc--EEEEcCCCC---HHHHHHHHHHHHHHhCCCC
Confidence            3446899999999999999999999998  99999997532110 00  000111110   11222222         37


Q ss_pred             CCEEEEcCCCCCCC----CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437           97 SDVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus        97 aD~Vi~~ag~~~~~----g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                      .|++|++||.....    ..+   ....+..|+.....+.+.+.+.- ..+++|++|..
T Consensus        77 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~  135 (241)
T 1dhr_A           77 VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAK  135 (241)
T ss_dssp             EEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             CCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCH
Confidence            89999999975321    111   23456778888888877776653 24678887643

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=98.54  E-value=3.4e-07  Score=73.48  Aligned_cols=114  Identities=18%  Similarity=0.188  Sum_probs=68.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCC-CCcceeEeecCCchhhh-------cCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHIN-TRSEVAGYMGNDQLGQA-------LEDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~-~~~~v~~~~~~~d~~~a-------~~~aD   98 (209)
                      ++|+|+||+|++|++++..|+++|+  +|+++++++...  ...++.... ...++.   ..++++++       +.+.|
T Consensus         6 k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~~~~~id   80 (234)
T 2ehd_A            6 GAVLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAELEGALPLPGDVR---EEGDWARAVAAMEEAFGELS   80 (234)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCEEEECCTT---CHHHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhhceEEEecCC---CHHHHHHHHHHHHHHcCCCC
Confidence            4799999999999999999999999  999999974211  111221110 000110   01122222       34789


Q ss_pred             EEEEcCCCCCCCC---CC---hhHHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCCC
Q 028437           99 VVIIPAGVPRKPG---MT---RDDLFNINAGIVK----DLCSAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus        99 ~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~snP~  148 (209)
                      ++|++||......   .+   ..+.+..|+....    .+++.+++. +.+++|++|...
T Consensus        81 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~isS~~  139 (234)
T 2ehd_A           81 ALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIVNVGSLA  139 (234)
T ss_dssp             EEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCTT
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEEECCch
Confidence            9999998753211   12   2345677776665    444444432 356788887543

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=98.52  E-value=6e-07  Score=72.38  Aligned_cols=114  Identities=20%  Similarity=0.196  Sum_probs=70.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH--HHhhcCCCCCccee-EeecCCchhhhcC---CCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVA-GYMGNDQLGQALE---DSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~--~~dl~~~~~~~~v~-~~~~~~d~~~a~~---~aD~Vi~  102 (209)
                      ++|+|+||+|++|.+++..|++.|+  +|+++++++....  ..++....   .+. ++...++++++++   ..|+||+
T Consensus         8 k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~D~~~~~~~~~~~~~~~~id~vi~   82 (244)
T 3d3w_A            8 RRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGIE---PVCVDLGDWEATERALGSVGPVDLLVN   82 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE---EEECCTTCHHHHHHHHTTCCCCCEEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcCCCC---EEEEeCCCHHHHHHHHHHcCCCCEEEE
Confidence            5899999999999999999999998  9999999742111  11121110   010 0111123344443   5799999


Q ss_pred             cCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh----CCCeEEEEecCC
Q 028437          103 PAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISNP  147 (209)
Q Consensus       103 ~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~----~p~~~viv~snP  147 (209)
                      +||......   .+   ....+..|+.....+.+.+.+.    ...++++++|..
T Consensus        83 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~  137 (244)
T 3d3w_A           83 NAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQ  137 (244)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             CCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCch
Confidence            998753211   12   2345677887766666555443    325778887754

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=98.52  E-value=7.3e-07  Score=74.06  Aligned_cols=129  Identities=20%  Similarity=0.198  Sum_probs=71.9

Q ss_pred             cccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCC--CcceeEeecCCc
Q 028437           14 KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINT--RSEVAGYMGNDQ   89 (209)
Q Consensus        14 ~~~~~~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~--~~~v~~~~~~~d   89 (209)
                      +..+.+++....-..++++||||+|.+|.+++..|++.|.  +|+++|+++..  ....++.....  ..++.   ..++
T Consensus        15 ~~~g~~sm~~~~l~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~---d~~~   89 (277)
T 3gvc_A           15 QTQGPGSMNHPDLAGKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKIGCGAAACRVDVS---DEQQ   89 (277)
T ss_dssp             ------------CTTCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCSSCEEEECCTT---CHHH
T ss_pred             ccCCCCCCCccCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcCCcceEEEecCC---CHHH
Confidence            4444555443333345799999999999999999999999  99999997521  12223311100  00111   0111


Q ss_pred             hhh-------hcCCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           90 LGQ-------ALEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        90 ~~~-------a~~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      .++       .+...|++|++||.....   ..+   ....+..|+.....+.+.+.+.   ...+.||++|..
T Consensus        90 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~  163 (277)
T 3gvc_A           90 IIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSL  163 (277)
T ss_dssp             HHHHHHHHHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCG
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcch
Confidence            222       234789999999975321   122   2345677887766666655432   346778888653

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.52  E-value=2.3e-07  Score=87.11  Aligned_cols=102  Identities=24%  Similarity=0.314  Sum_probs=67.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHH-----H----hhcCCC---------CCcceeEeecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-----A----DVGHIN---------TRSEVAGYMGND   88 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~-----~----dl~~~~---------~~~~v~~~~~~~   88 (209)
                      +++||+|+|+ |.+|..++..++..|+  +|+++|+++.....     .    .+....         ...++..   ++
T Consensus       311 ~~~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~  384 (725)
T 2wtb_A          311 KIKKVAIIGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKG---SL  384 (725)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEE---ES
T ss_pred             cCcEEEEEcC-CHhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEE---eC
Confidence            4568999999 9999999999999999  99999997521110     0    011110         0112332   34


Q ss_pred             chhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 028437           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (209)
Q Consensus        89 d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~  150 (209)
                      |+ +++++||+||.++.              ++....+.+.+.+.++++... |++||.+..
T Consensus       385 d~-~~~~~aDlVIeaVp--------------e~~~vk~~v~~~l~~~~~~~~-IlasntStl  430 (725)
T 2wtb_A          385 DY-ESFRDVDMVIEAVI--------------ENISLKQQIFADLEKYCPQHC-ILASNTSTI  430 (725)
T ss_dssp             SS-GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTC-EEEECCSSS
T ss_pred             CH-HHHCCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCc-EEEeCCCCC
Confidence            66 68999999999962              234556677777877775332 347887654

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.52  E-value=5.2e-07  Score=80.58  Aligned_cols=117  Identities=16%  Similarity=0.244  Sum_probs=71.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC--CCccEEEEEecCCchhHHHhhcCCCCC---------------cceeEeecC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTR---------------SEVAGYMGN   87 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~--g~~~ev~l~D~~~~~~~~~dl~~~~~~---------------~~v~~~~~~   87 (209)
                      |.++|||+|+|+ |.+|..++..|++.  |+  +|+++|+++.+  ...+.....+               ..+..   +
T Consensus         2 M~~~mkI~VIG~-G~mG~~lA~~La~~g~G~--~V~~~d~~~~~--~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~---t   73 (467)
T 2q3e_A            2 MFEIKKICCIGA-GYVGGPTCSVIAHMCPEI--RVTVVDVNESR--INAWNSPTLPIYEPGLKEVVESCRGKNLFF---S   73 (467)
T ss_dssp             CCCCCEEEEECC-STTHHHHHHHHHHHCTTS--EEEEECSCHHH--HHHHTSSSCSSCCTTHHHHHHHHBTTTEEE---E
T ss_pred             CCCccEEEEECC-CHHHHHHHHHHHhcCCCC--EEEEEECCHHH--HHHHhCCCCCcCCCCHHHHHHHhhcCCEEE---E
Confidence            556689999999 99999999999988  77  99999997532  2222221100               11222   3


Q ss_pred             CchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-cCCCCC
Q 028437           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNS  150 (209)
Q Consensus        88 ~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~-snP~~~  150 (209)
                      +++++++++||+||++.+.+........+ ...++..+.+.++.+.++. ++..++.. |+|.+.
T Consensus        74 ~~~~e~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~  137 (467)
T 2q3e_A           74 TNIDDAIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRA  137 (467)
T ss_dssp             SCHHHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTH
T ss_pred             CCHHHHHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchH
Confidence            56778899999999998765432110000 0123344566666666654 44444444 566653

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=98.52  E-value=4.7e-07  Score=74.36  Aligned_cols=113  Identities=17%  Similarity=0.243  Sum_probs=72.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhhcC-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQALE-------   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~~-------   95 (209)
                      ++|+|+||+|++|.+++..|+++|+  +|++++++...  ....++....   .+..+. +   .++++++++       
T Consensus        17 k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~   91 (278)
T 2bgk_A           17 KVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDEDVRNLVDTTIAKHG   91 (278)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCChhHHHHHHHHhCCCC---ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999998  99999997421  1222332211   121111 1   112333333       


Q ss_pred             CCCEEEEcCCCCCCC-----CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKP-----GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~-----g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      +.|+||++||.....     ..+   ..+.+..|+.....+.+.+.+.   ...+++|++|.
T Consensus        92 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  153 (278)
T 2bgk_A           92 KLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTAS  153 (278)
T ss_dssp             CCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             CCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEee
Confidence            799999999875321     112   2345778888777777766654   24567888764

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=98.52  E-value=2.5e-06  Score=69.94  Aligned_cols=116  Identities=22%  Similarity=0.176  Sum_probs=72.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEee-cCC---chhhhc-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYM-GND---QLGQAL-------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~-~~~---d~~~a~-------   94 (209)
                      .++++|+||+|++|.+++..|++.|+  +|+++++++...  ...++........+..+. +-+   ++++++       
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  999999974221  122333211011222211 111   233333       


Q ss_pred             CCCCEEEEcCCCCCCCCCChhHHHHHHHH----HHHHHHHHHHhhC--CCeEEEEecCC
Q 028437           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAG----IVKDLCSAIAKYC--PNAIVNMISNP  147 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~----~~~~i~~~i~~~~--p~~~viv~snP  147 (209)
                      ...|++|++||...  ..+..+.+..|+.    .++.+++.+++..  +.+++|++|..
T Consensus        85 g~id~lv~~Ag~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~  141 (267)
T 2gdz_A           85 GRLDILVNNAGVNN--EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL  141 (267)
T ss_dssp             SCCCEEEECCCCCC--SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCCCEEEECCCCCC--hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCc
Confidence            35799999999753  2344556777766    5566677776543  25778888653

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.52  E-value=1.8e-07  Score=75.26  Aligned_cols=115  Identities=20%  Similarity=0.153  Sum_probs=69.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC--CccEEEEEecCCchhHHHhhcCCCCCcceeEee-c---CCchhhhcC------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQLGQALE------   95 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g--~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~~------   95 (209)
                      +++|+|+||+|++|.+++..|++.|  +  +|+++++++....  ++.+.. ...+..+. +   .++++++++      
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~--~V~~~~r~~~~~~--~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIR--HIIATARDVEKAT--ELKSIK-DSRVHVLPLTVTCDKSLDTFVSKVGEIV   77 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCC--EEEEEESSGGGCH--HHHTCC-CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCc--EEEEEecCHHHHH--HHHhcc-CCceEEEEeecCCHHHHHHHHHHHHHhc
Confidence            3589999999999999999999999  8  9999999753221  121110 11222211 1   112334444      


Q ss_pred             ---CCCEEEEcCCCCC-CC---CCC---hhHHHHHHHHHHHHHHHHHHhh---C------C-----CeEEEEecCC
Q 028437           96 ---DSDVVIIPAGVPR-KP---GMT---RDDLFNINAGIVKDLCSAIAKY---C------P-----NAIVNMISNP  147 (209)
Q Consensus        96 ---~aD~Vi~~ag~~~-~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~------p-----~~~viv~snP  147 (209)
                         +.|+||++||... ..   ..+   ....+..|+.....+.+.+.++   .      .     .+++|++|..
T Consensus        78 g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~  153 (250)
T 1yo6_A           78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSG  153 (250)
T ss_dssp             GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCG
T ss_pred             CCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccC
Confidence               7999999998754 11   112   2345667776666655554432   1      2     4677777653

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=98.52  E-value=3.1e-07  Score=74.91  Aligned_cols=112  Identities=17%  Similarity=0.174  Sum_probs=71.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhcC------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQALE------   95 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~------   95 (209)
                      .++|+|+||+|++|.+++..|+++|+  +|++++++...  ....++..     .+..+.    ..++++++++      
T Consensus        12 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (265)
T 2o23_A           12 GLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLGN-----NCVFAPADVTSEKDVQTALALAKGKF   84 (265)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcHhHHHHHHHhCC-----ceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            35899999999999999999999999  99999997532  12222311     111111    0112334444      


Q ss_pred             -CCCEEEEcCCCCCCCC---------CC---hhHHHHHHHHHHHHHHHHHHhhC---------CCeEEEEecC
Q 028437           96 -DSDVVIIPAGVPRKPG---------MT---RDDLFNINAGIVKDLCSAIAKYC---------PNAIVNMISN  146 (209)
Q Consensus        96 -~aD~Vi~~ag~~~~~g---------~~---r~~~~~~N~~~~~~i~~~i~~~~---------p~~~viv~sn  146 (209)
                       ..|+||++||......         .+   ....+..|+.....+.+.+.++-         ..+++|++|.
T Consensus        85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS  157 (265)
T 2o23_A           85 GRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTAS  157 (265)
T ss_dssp             SCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECC
T ss_pred             CCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCC
Confidence             8999999999753211         12   23456778877777776665541         3467777764

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=98.51  E-value=2.4e-07  Score=75.50  Aligned_cols=117  Identities=21%  Similarity=0.208  Sum_probs=70.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCC-----CcceeEee-c---CCchhhhcCC-
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINT-----RSEVAGYM-G---NDQLGQALED-   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~-----~~~v~~~~-~---~~d~~~a~~~-   96 (209)
                      ++|+||||+|++|.+++..|++.|+  +|+++++++...  ...++.....     ...+..+. +   .+++++++++ 
T Consensus         8 k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   85 (264)
T 2pd6_A            8 ALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQV   85 (264)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHHH
Confidence            4899999999999999999999998  999999974211  1122221110     01111111 1   1123333433 


Q ss_pred             ------C-CEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh----CCCeEEEEecCC
Q 028437           97 ------S-DVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISNP  147 (209)
Q Consensus        97 ------a-D~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~----~p~~~viv~snP  147 (209)
                            . |+||++||......   .+   ....+..|+.....+.+.+.+.    ...+++|++|..
T Consensus        86 ~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  153 (264)
T 2pd6_A           86 QACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSI  153 (264)
T ss_dssp             HHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCT
T ss_pred             HHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECCh
Confidence                  3 99999999754211   12   3345677887777777766554    225678887753

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=98.50  E-value=9.3e-07  Score=70.93  Aligned_cols=116  Identities=18%  Similarity=0.158  Sum_probs=69.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEeecCCchhhhcCCC----CEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALEDS----DVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a----D~Vi~  102 (209)
                      ++|+|+||+|.+|.+++..|++.|.  +|++.++++...  ...++.. ......-++...++.+++++.+    |++|+
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~   78 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK--ATYLTGRSESKLSTVTNCLSN-NVGYRARDLASHQEVEQLFEQLDSIPSTVVH   78 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHTCSS-CCCEEECCTTCHHHHHHHHHSCSSCCSEEEE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhh-ccCeEeecCCCHHHHHHHHHHHhhcCCEEEE
Confidence            4699999999999999999999998  999999975221  1222211 1100000011112233444433    99999


Q ss_pred             cCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecCC
Q 028437          103 PAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNP  147 (209)
Q Consensus       103 ~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~snP  147 (209)
                      +||......   .+   ....+..|+.....+.+.+.+.-  ....+|++|..
T Consensus        79 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~  131 (230)
T 3guy_A           79 SAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMST  131 (230)
T ss_dssp             CCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCG
T ss_pred             eCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeec
Confidence            999754221   12   23456778887777777766542  12367777643

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=98.50  E-value=1.8e-06  Score=71.17  Aligned_cols=117  Identities=18%  Similarity=0.224  Sum_probs=70.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-------~   95 (209)
                      ++|+|+||+|++|..++..|++.|.  +|+++|+++..  ....++.....  .+..+. +   .+++++++       .
T Consensus        32 k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~g  107 (272)
T 1yb1_A           32 EIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLGA--KVHTFVVDCSNREDIYSSAKKVKAEIG  107 (272)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhcCC--eEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            5899999999999999999999998  99999997521  11222322111  111111 1   11222333       3


Q ss_pred             CCCEEEEcCCCCCCCCC------ChhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCC
Q 028437           96 DSDVVIIPAGVPRKPGM------TRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVN  149 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g~------~r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP~~  149 (209)
                      +.|+||++||.......      +..+.+..|+.....+.+.+.+.   ...+++|++|....
T Consensus       108 ~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~  170 (272)
T 1yb1_A          108 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAG  170 (272)
T ss_dssp             CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-
T ss_pred             CCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhh
Confidence            78999999997542211      12345677877755555544332   34577888876543

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=98.50  E-value=2.4e-07  Score=74.73  Aligned_cols=114  Identities=18%  Similarity=0.251  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEee----cCCchhhhcC-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYM----GNDQLGQALE-------   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~----~~~d~~~a~~-------   95 (209)
                      ++|+|+||+|++|.+++..|++.|+  +|+++++++...  ...++.... ...+..+.    ..++++++++       
T Consensus         8 ~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (248)
T 2pnf_A            8 KVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESINKAFEEIYNLVD   84 (248)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            5899999999999999999999998  999999974211  112221100 00111111    1112333443       


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHH----HHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~----i~~~~p~~~viv~sn  146 (209)
                      +.|+||++||......   .+   ..+.+..|+.....+.+.    +.+. +.+++|++|.
T Consensus        85 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS  144 (248)
T 2pnf_A           85 GIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQ-RWGRIVNISS  144 (248)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHH-TCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence            8999999999754211   12   334577788777555444    4333 3467777764

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=98.49  E-value=1.1e-06  Score=73.68  Aligned_cols=115  Identities=19%  Similarity=0.174  Sum_probs=71.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-c---CCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-G---NDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-------~   95 (209)
                      ++|+||||+|.+|.+++..|++.|.  +|++.++++.  .....++.....  .+..+. +   .++.++++       .
T Consensus        32 k~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           32 RAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQGF--DAHGVVCDVRHLDEMVRLADEAFRLLG  107 (301)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            5799999999999999999999998  9999999752  122223332211  111111 1   11233333       3


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~snP  147 (209)
                      ..|++|++||......   .+   ....+..|+.....+.+.+    .+....+.++++|..
T Consensus       108 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  169 (301)
T 3tjr_A          108 GVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASF  169 (301)
T ss_dssp             SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCch
Confidence            7899999999763211   12   2345677776666666554    444446788888653

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=98.49  E-value=8.8e-07  Score=72.33  Aligned_cols=117  Identities=16%  Similarity=0.138  Sum_probs=71.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC---CccEEEEEecCCchh-HHHhhcCCCCCcceeEe----ecCCchhhhcC---
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNP---LVSRLALYDIANTPG-VAADVGHINTRSEVAGY----MGNDQLGQALE---   95 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g---~~~ev~l~D~~~~~~-~~~dl~~~~~~~~v~~~----~~~~d~~~a~~---   95 (209)
                      ++++|+||||+|++|++++..|++.|   .  +|++++++.... ...++.....  .+..+    ...++++++++   
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~--~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~   95 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNHS--NIHILEIDLRNFDAYDKLVADIE   95 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHCT--TEEEEECCTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCc--EEEEEecChhhhHHHHHhhccCC--ceEEEEecCCChHHHHHHHHHHH
Confidence            34589999999999999999999999   7  999999975211 1222221110  11111    11223444444   


Q ss_pred             ------CCCEEEEcCCCCCCCC----CC---hhHHHHHHHHHHHHHHHHHHhh----------CC----CeEEEEecCC
Q 028437           96 ------DSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKY----------CP----NAIVNMISNP  147 (209)
Q Consensus        96 ------~aD~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~~~i~~~i~~~----------~p----~~~viv~snP  147 (209)
                            ..|+||++||.....+    .+   ....+..|+.....+.+.+.+.          .+    .+.+|++|..
T Consensus        96 ~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~  174 (267)
T 1sny_A           96 GVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSI  174 (267)
T ss_dssp             HHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCG
T ss_pred             HhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecc
Confidence                  7999999999764111    12   2345667777766666665443          11    4678887753

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=98.49  E-value=1.1e-07  Score=74.69  Aligned_cols=111  Identities=17%  Similarity=0.163  Sum_probs=71.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEeecCCchhhhcC---CCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~~---~aD~Vi~~  103 (209)
                      |+|+|+||+|++|++++..|+++    +|+++++++...  ...++.......++.   ..++++++++   +.|+||++
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRAGALAELAREVGARALPADLA---DELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCHHHHHHHHHHHTCEECCCCTT---SHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCHHHHHHHHHhccCcEEEeeCC---CHHHHHHHHHhcCCCCEEEEC
Confidence            47999999999999999999887    889999974211  111221110111111   1123455555   89999999


Q ss_pred             CCCCCCC------CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          104 AGVPRKP------GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       104 ag~~~~~------g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ||.....      ..+....+..|+.....+.+.+.+ .+.++++++|..
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~iv~~sS~  122 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARF-QKGARAVFFGAY  122 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCE-EEEEEEEEECCC
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHh-cCCcEEEEEcCh
Confidence            9875321      122445678899999999988843 244677777753

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.48  E-value=3.5e-07  Score=82.11  Aligned_cols=101  Identities=23%  Similarity=0.362  Sum_probs=67.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH--HHh----hc---CCCC-C--------cceeEeecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AAD----VG---HINT-R--------SEVAGYMGND   88 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~--~~d----l~---~~~~-~--------~~v~~~~~~~   88 (209)
                      +.+||+|+|+ |.+|..++..|++.|+  +|+++|+++....  ...    +.   .... .        .++..   ++
T Consensus         4 ~~~kVgVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~   77 (483)
T 3mog_A            4 NVQTVAVIGS-GTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP---VT   77 (483)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE---EC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE---eC
Confidence            3569999999 9999999999999999  9999999852111  000    11   1110 0        12332   34


Q ss_pred             chhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCC
Q 028437           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS  150 (209)
Q Consensus        89 d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p-~~~viv~snP~~~  150 (209)
                      ++ +++++||+||.++.              .+....+++.+.+.++++ +++  ++||.+..
T Consensus        78 ~~-~~~~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~~I--lasntSti  123 (483)
T 3mog_A           78 DI-HALAAADLVIEAAS--------------ERLEVKKALFAQLAEVCPPQTL--LTTNTSSI  123 (483)
T ss_dssp             CG-GGGGGCSEEEECCC--------------CCHHHHHHHHHHHHHHSCTTCE--EEECCSSS
T ss_pred             CH-HHhcCCCEEEEcCC--------------CcHHHHHHHHHHHHHhhccCcE--EEecCCCC
Confidence            66 57999999999952              234555677777887774 553  46776664

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.48  E-value=2.2e-07  Score=66.34  Aligned_cols=74  Identities=26%  Similarity=0.293  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g-~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      +++||+|+|+ |++|+.++..|.+.| +  +|+++|+++...  ..+...............+++++.++++|+||++++
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~--~v~~~~r~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~   78 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNY--SVTVADHDLAAL--AVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAP   78 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSE--EEEEEESCHHHH--HHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCc--eEEEEeCCHHHH--HHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCC
Confidence            3469999999 999999999999999 6  999999975322  222221111000001111245677899999999974

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.48  E-value=4.7e-07  Score=76.91  Aligned_cols=100  Identities=16%  Similarity=0.153  Sum_probs=65.0

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCC----CccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCE
Q 028437           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNP----LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDV   99 (209)
Q Consensus        24 ~~~~~~kI~IiGasG~vG~~la~~L~~~g----~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~   99 (209)
                      +|.++|||+|||+ |.+|..++..|.+.|    +  +|+++|+++.......+....    +..   +.+..++++++|+
T Consensus        18 ~~~~~mkI~iIG~-G~mG~ala~~L~~~G~~~~~--~V~v~~r~~~~~~~~~l~~~G----~~~---~~~~~e~~~~aDv   87 (322)
T 2izz_A           18 LYFQSMSVGFIGA-GQLAFALAKGFTAAGVLAAH--KIMASSPDMDLATVSALRKMG----VKL---TPHNKETVQHSDV   87 (322)
T ss_dssp             ----CCCEEEESC-SHHHHHHHHHHHHTTSSCGG--GEEEECSCTTSHHHHHHHHHT----CEE---ESCHHHHHHHCSE
T ss_pred             hccCCCEEEEECC-CHHHHHHHHHHHHCCCCCcc--eEEEECCCccHHHHHHHHHcC----CEE---eCChHHHhccCCE
Confidence            3445679999999 999999999999998    5  899999975311222232211    121   2345678889999


Q ss_pred             EEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 028437          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (209)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~  149 (209)
                      ||++.. +               ..+.++++.+.... ++..++.++|...
T Consensus        88 Vilav~-~---------------~~~~~vl~~l~~~l~~~~ivvs~s~gi~  122 (322)
T 2izz_A           88 LFLAVK-P---------------HIIPFILDEIGADIEDRHIVVSCAAGVT  122 (322)
T ss_dssp             EEECSC-G---------------GGHHHHHHHHGGGCCTTCEEEECCTTCC
T ss_pred             EEEEeC-H---------------HHHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence            999963 1               12244555665544 5677777778766

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=98.48  E-value=1.1e-06  Score=72.85  Aligned_cols=123  Identities=13%  Similarity=0.122  Sum_probs=73.2

Q ss_pred             ccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cCC---chhhh-
Q 028437           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQA-   93 (209)
Q Consensus        21 ~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a-   93 (209)
                      +.+.|.+.++++||||+|.+|.+++..|++.|.  +|++.++++.  .....++.....  .+..+. +-+   +.+++ 
T Consensus        17 ~~~~m~~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~   92 (279)
T 3sju_A           17 RGSHMSRPQTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAAGH--DVDGSSCDVTSTDEVHAAV   92 (279)
T ss_dssp             --------CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHH
T ss_pred             CcccccCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHH
Confidence            334444556899999999999999999999999  9999999752  222333433221  121111 111   22222 


Q ss_pred             ------cCCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh-----CCCeEEEEecCC
Q 028437           94 ------LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY-----CPNAIVNMISNP  147 (209)
Q Consensus        94 ------~~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~-----~p~~~viv~snP  147 (209)
                            +...|++|++||......   .+   ....+..|+.....+.+.+.+.     ...+.+|++|..
T Consensus        93 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~  163 (279)
T 3sju_A           93 AAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIAST  163 (279)
T ss_dssp             HHHHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCG
T ss_pred             HHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECCh
Confidence                  237899999999754221   12   2345678888877777766441     245678888643

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=98.46  E-value=5.2e-07  Score=73.88  Aligned_cols=114  Identities=11%  Similarity=0.100  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCC-CCCcceeEee----cCCchhhhc-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHI-NTRSEVAGYM----GNDQLGQAL-------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~-~~~~~v~~~~----~~~d~~~a~-------   94 (209)
                      ++++||||+|++|.+++..|++.|.  +|+++++++..  ....++... .  .++..+.    ..+++++++       
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            8 KVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQVDRLHEAARSLKEKFG--VRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5799999999999999999999998  99999997421  112222211 1  0111111    111233333       


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      .+.|++|++||.....   ..+   ....+..|+.....+.+.+.++   ...+++|++|.
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS  144 (263)
T 3ai3_A           84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNAS  144 (263)
T ss_dssp             SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECc
Confidence            3799999999975321   122   2345666776666555554332   23467777764

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=98.46  E-value=1.1e-06  Score=71.04  Aligned_cols=114  Identities=18%  Similarity=0.177  Sum_probs=68.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhhcC-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQALE-------   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~~-------   95 (209)
                      ++++|+||+|++|.+++..|++.|+  +|+++++++..  ....++... ...++..+. +   .++++++++       
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD--RVAALDLSAETLEETARTHWHA-YADKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHSTT-TGGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh-cCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999998  99999997421  112223111 011222211 1   112334443       


Q ss_pred             CCCEEEEcCCCCCCCC------CC---hhHHHHHHHHHHHHH----HHHHHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG------MT---RDDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g------~~---r~~~~~~N~~~~~~i----~~~i~~~~p~~~viv~sn  146 (209)
                      +.|+||++||......      .+   ....+..|+.....+    .+.+++. ...+++++|.
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS  142 (250)
T 2cfc_A           80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQ-GAGVIVNIAS  142 (250)
T ss_dssp             CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEECC
Confidence            7999999998753211      12   233456777665444    4444443 3467777764

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=98.45  E-value=8.8e-07  Score=72.76  Aligned_cols=116  Identities=23%  Similarity=0.250  Sum_probs=71.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cC---Cchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GN---DQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~---~d~~~a~-------~   95 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.|+++.  .....++..... ..+..+. +-   ++.++++       .
T Consensus        11 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (262)
T 3pk0_A           11 RSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLGS-GKVIGVQTDVSDRAQCDALAGRAVEEFG   87 (262)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTSS-SCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCC-CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            5899999999999999999999999  9999999752  222334433221 1122111 11   1222333       3


Q ss_pred             CCCEEEEcCCCCCCC---CCCh---hHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~r---~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      ..|++|++||.....   ..+.   ...+..|+.....+.+.+.++   ...+++|++|..
T Consensus        88 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~  148 (262)
T 3pk0_A           88 GIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSI  148 (262)
T ss_dssp             CCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCS
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEech
Confidence            899999999975321   1222   334677877666666555443   234677777643

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=98.45  E-value=2.6e-06  Score=69.69  Aligned_cols=115  Identities=12%  Similarity=0.123  Sum_probs=72.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cC---Cchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GN---DQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~---~d~~~a~-------~   95 (209)
                      ++++||||+|.+|.+++..|++.|.  +|+++|+++.  .....++.....  .+..+. +-   ++.++++       .
T Consensus         7 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (257)
T 3imf_A            7 KVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQFPG--QILTVQMDVRNTDDIQKMIEQIDEKFG   82 (257)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCSTT--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999999999  9999999752  222333433221  122111 11   1222333       3


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~snP  147 (209)
                      ..|++|++||......   .+   ....+..|+.....+.+.+    .+....+.+|++|..
T Consensus        83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  144 (257)
T 3imf_A           83 RIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVAT  144 (257)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCG
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECch
Confidence            7899999999653211   22   2345677877666666555    344456778888653

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=98.45  E-value=5.7e-07  Score=73.61  Aligned_cols=115  Identities=17%  Similarity=0.261  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhcC------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQALE------D   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~------~   96 (209)
                      ++++||||+|++|.+++..|++.|.  +|+++++++..  ....++........+..+.    ..++++++++      +
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (260)
T 2z1n_A            8 KLAVVTAGSSGLGFASALELARNGA--RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLGG   85 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999998  99999997521  1122222100000111111    1112334443      5


Q ss_pred             CCEEEEcCCCCCCCC---CC---hhHHHHHHHHHH----HHHHHHHHhhCCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~sn  146 (209)
                      .|++|++||......   .+   ....+..|+...    +.+.+.+.+. ..+++|++|.
T Consensus        86 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS  144 (260)
T 2z1n_A           86 ADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEK-GWGRMVYIGS  144 (260)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECc
Confidence            999999999753211   12   234566777766    4444455443 3467787764

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=98.45  E-value=1.7e-06  Score=70.16  Aligned_cols=114  Identities=19%  Similarity=0.271  Sum_probs=70.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEee----cCCchhhhc------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM----GNDQLGQAL------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~------   94 (209)
                      .++++||||+|++|.+++..|++.|.  +|++.+++..   .....++.....  ++..+.    ..++.++++      
T Consensus         4 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~   79 (246)
T 3osu_A            4 TKSALVTGASRGIGRSIALQLAEEGY--NVAVNYAGSKEKAEAVVEEIKAKGV--DSFAIQANVADADEVKAMIKEVVSQ   79 (246)
T ss_dssp             SCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTS--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999999  9999887531   112222322211  111111    111223333      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecC
Q 028437           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (209)
Q Consensus        95 -~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~sn  146 (209)
                       ...|++|++||.....   ..+   ....+..|+.....+.+.+    .+. ..+.+|++|.
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS  141 (246)
T 3osu_A           80 FGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQ-RSGAIINLSS  141 (246)
T ss_dssp             HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcc
Confidence             3789999999975421   122   2345777887777776666    333 4567887764

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.45  E-value=3.2e-07  Score=77.33  Aligned_cols=99  Identities=20%  Similarity=0.244  Sum_probs=63.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHh-hcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAAD-VGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~d-l~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      ..-+||+|+|+ |.+|+.++..|+ .|+  +|+++|+++... ...+ +.+.. -..++.   ++++++ +++||+||.+
T Consensus        10 ~~~~~V~vIG~-G~MG~~iA~~la-aG~--~V~v~d~~~~~~~~~~~~l~~~~-~~~i~~---~~~~~~-~~~aDlViea   80 (293)
T 1zej_A           10 HHHMKVFVIGA-GLMGRGIAIAIA-SKH--EVVLQDVSEKALEAAREQIPEEL-LSKIEF---TTTLEK-VKDCDIVMEA   80 (293)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHSCGGG-GGGEEE---ESSCTT-GGGCSEEEEC
T ss_pred             cCCCeEEEEee-CHHHHHHHHHHH-cCC--EEEEEECCHHHHHHHHHHHHHHH-hCCeEE---eCCHHH-HcCCCEEEEc
Confidence            34479999999 999999999999 999  999999975211 1111 11110 012332   245654 8999999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~  150 (209)
                      ..              ++....+.+...+... |++++  ++|.+..
T Consensus        81 vp--------------e~~~vk~~l~~~l~~~-~~~Il--asntSti  110 (293)
T 1zej_A           81 VF--------------EDLNTKVEVLREVERL-TNAPL--CSNTSVI  110 (293)
T ss_dssp             CC--------------SCHHHHHHHHHHHHTT-CCSCE--EECCSSS
T ss_pred             Cc--------------CCHHHHHHHHHHHhcC-CCCEE--EEECCCc
Confidence            52              2334455566667777 77753  5666553

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=98.45  E-value=1.4e-06  Score=71.25  Aligned_cols=114  Identities=13%  Similarity=0.097  Sum_probs=71.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhhc--------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQAL--------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~--------   94 (209)
                      ++|+||||+|++|.+++..|++.|.  +|+++++++..  ....++....  ..+..+. +   .++.++++        
T Consensus        10 k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (260)
T 2ae2_A           10 CTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHFH   85 (260)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999998  99999997521  1122232111  1111111 1   11223333        


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ...|++|++||......   .+   ....+..|+.....+.+.+.++   ...+++|++|.
T Consensus        86 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS  146 (260)
T 2ae2_A           86 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISS  146 (260)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            57999999999753211   12   2345677887777776666432   34567888864

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=98.45  E-value=6.2e-07  Score=73.46  Aligned_cols=112  Identities=20%  Similarity=0.189  Sum_probs=70.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhh-------hcCCCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQ-------ALEDSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~-------a~~~aD~Vi  101 (209)
                      ++|+|+||+|.+|..++..|++.|.  +|++.++++...........+    +.   ..+++++       .+...|++|
T Consensus        22 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~D----l~---d~~~v~~~~~~~~~~~g~iD~lv   92 (253)
T 2nm0_A           22 RSVLVTGGNRGIGLAIARAFADAGD--KVAITYRSGEPPEGFLAVKCD----IT---DTEQVEQAYKEIEETHGPVEVLI   92 (253)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECC----TT---SHHHHHHHHHHHHHHTCSCSEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHhhccceEEEec----CC---CHHHHHHHHHHHHHHcCCCCEEE
Confidence            4799999999999999999999998  999999964211100000001    00   0111222       234579999


Q ss_pred             EcCCCCCCC------CCChhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCC
Q 028437          102 IPAGVPRKP------GMTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVN  149 (209)
Q Consensus       102 ~~ag~~~~~------g~~r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP~~  149 (209)
                      ++||.....      ..+....+..|+.....+.+.+.+.   ...+++|++|....
T Consensus        93 ~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~  149 (253)
T 2nm0_A           93 ANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVG  149 (253)
T ss_dssp             EECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCC
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhh
Confidence            999975321      1234556778887776666654432   24577888876544

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=98.44  E-value=6.1e-07  Score=73.31  Aligned_cols=113  Identities=15%  Similarity=0.154  Sum_probs=68.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeE--eecCCchhhhc-------CCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAG--YMGNDQLGQAL-------EDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~--~~~~~d~~~a~-------~~a   97 (209)
                      ++++||||+|.+|.+++..|++.|.  +|+++|+++...  ...++...   .....  +...++.++++       ...
T Consensus         8 k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   82 (257)
T 3tpc_A            8 RVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKPPAGEEPAAELGAA---VRFRNADVTNEADATAALAFAKQEFGHV   82 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSCC---------------CEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCc---eEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5799999999999999999999999  999999975311  11122110   00000  10111233333       389


Q ss_pred             CEEEEcCCCCCCCC-------CC---hhHHHHHHHHHHHHHHHHHHhh---------CCCeEEEEecC
Q 028437           98 DVVIIPAGVPRKPG-------MT---RDDLFNINAGIVKDLCSAIAKY---------CPNAIVNMISN  146 (209)
Q Consensus        98 D~Vi~~ag~~~~~g-------~~---r~~~~~~N~~~~~~i~~~i~~~---------~p~~~viv~sn  146 (209)
                      |++|++||......       .+   ....+..|+.....+.+.+.++         ...+.+|++|.
T Consensus        83 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS  150 (257)
T 3tpc_A           83 HGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTAS  150 (257)
T ss_dssp             CEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECC
T ss_pred             CEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEec
Confidence            99999999753211       12   2345677877777666666543         13567888764

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.44  E-value=1.8e-07  Score=75.43  Aligned_cols=111  Identities=16%  Similarity=0.126  Sum_probs=70.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhh-------c--CCCCE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA-------L--EDSDV   99 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a-------~--~~aD~   99 (209)
                      ++|+|+||+|++|.+++..|+++|+  +|+++++++..... ..  .....++..   .++.+++       +  .+.|+
T Consensus         4 k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~-~~--~~~~~D~~~---~~~~~~~~~~~~~~~~~g~id~   75 (236)
T 1ooe_A            4 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQAD-SN--ILVDGNKNW---TEQEQSILEQTASSLQGSQVDG   75 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTSS-EE--EECCTTSCH---HHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecCcccccc-cc--EEEeCCCCC---HHHHHHHHHHHHHHhCCCCCCE
Confidence            5799999999999999999999998  99999997532110 00  000111111   1112222       2  37899


Q ss_pred             EEEcCCCCCCC----CC---ChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437          100 VIIPAGVPRKP----GM---TRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus       100 Vi~~ag~~~~~----g~---~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                      +|++||.....    ..   +....+..|+.....+.+.+.++- ..++++++|..
T Consensus        76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  131 (236)
T 1ooe_A           76 VFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAA  131 (236)
T ss_dssp             EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             EEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECch
Confidence            99999975321    11   123456788888888888777653 24678887653

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=98.44  E-value=8.3e-07  Score=71.41  Aligned_cols=116  Identities=19%  Similarity=0.273  Sum_probs=68.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-ecCCchh--HHHhhcCCCCCcc--ee-EeecCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANTPG--VAADVGHINTRSE--VA-GYMGNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~-D~~~~~~--~~~dl~~~~~~~~--v~-~~~~~~d~~~a-------~~   95 (209)
                      ++|+|+||+|++|.+++..|++.|+  +|+++ ++++...  ...++........  +. ++...++++++       +.
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG   79 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999998  99988 7754211  1122221111111  11 01011122233       34


Q ss_pred             CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      +.|+||++||.....   ..+   ....+..|+..    ++.+.+.+++. ...++|++|..
T Consensus        80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~~sS~  140 (245)
T 2ph3_A           80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKA-RFGRIVNITSV  140 (245)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCT
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhc-CCCEEEEEeCh
Confidence            899999999975421   112   23456778777    55555666544 34678877753

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.44  E-value=1.9e-06  Score=76.62  Aligned_cols=109  Identities=17%  Similarity=0.215  Sum_probs=71.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC----------------CcceeEeecCCchh
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLG   91 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~----------------~~~v~~~~~~~d~~   91 (209)
                      ..+|+|+|+ |++|..++..|++.|+  +|+++|+++.+  +..+.....                ...+..   ++|++
T Consensus         8 ~~~~~vIGl-G~vG~~~A~~La~~G~--~V~~~D~~~~k--v~~l~~g~~~~~epgl~~~~~~~~~~g~l~~---ttd~~   79 (446)
T 4a7p_A            8 SVRIAMIGT-GYVGLVSGACFSDFGH--EVVCVDKDARK--IELLHQNVMPIYEPGLDALVASNVKAGRLSF---TTDLA   79 (446)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTT--HHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHH
T ss_pred             ceEEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHhcCCCCccCCCHHHHHHhhcccCCEEE---ECCHH
Confidence            358999999 9999999999999999  99999998632  222332110                012332   46788


Q ss_pred             hhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEec-CCCC
Q 028437           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS-NPVN  149 (209)
Q Consensus        92 ~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~s-nP~~  149 (209)
                      +++++||+||++.+.|...+..     .-++..+++.++.+.++. +...+|..| -|.+
T Consensus        80 ea~~~aDvvii~Vptp~~~~~~-----~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pg  134 (446)
T 4a7p_A           80 EGVKDADAVFIAVGTPSRRGDG-----HADLSYVFAAAREIAENLTKPSVIVTKSTVPVG  134 (446)
T ss_dssp             HHHTTCSEEEECCCCCBCTTTC-----CBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTT
T ss_pred             HHHhcCCEEEEEcCCCCccccC-----CccHHHHHHHHHHHHHhcCCCCEEEEeCCCCch
Confidence            8999999999998877532110     122344555566666554 444554443 3444

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.44  E-value=4.6e-07  Score=76.53  Aligned_cols=73  Identities=10%  Similarity=0.172  Sum_probs=52.6

Q ss_pred             ccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEE
Q 028437           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (209)
Q Consensus        21 ~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~V  100 (209)
                      +.+.+..+|||+|+|+ |.+|..++..|+..|+  +|+++|+++...  .++.+..    +..   .+++++++++||+|
T Consensus        14 ~~~~~~~m~~I~iIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~--~~l~~~g----~~~---~~~~~~~~~~aDvv   81 (310)
T 3doj_A           14 LVPRGSHMMEVGFLGL-GIMGKAMSMNLLKNGF--KVTVWNRTLSKC--DELVEHG----ASV---CESPAEVIKKCKYT   81 (310)
T ss_dssp             ----CCCSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGG--HHHHHTT----CEE---CSSHHHHHHHCSEE
T ss_pred             cCcccccCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHCC----CeE---cCCHHHHHHhCCEE
Confidence            4445666789999999 9999999999999999  999999975322  2222221    111   34678889999999


Q ss_pred             EEcCC
Q 028437          101 IIPAG  105 (209)
Q Consensus       101 i~~ag  105 (209)
                      |++..
T Consensus        82 i~~vp   86 (310)
T 3doj_A           82 IAMLS   86 (310)
T ss_dssp             EECCS
T ss_pred             EEEcC
Confidence            99863

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=98.44  E-value=5.4e-07  Score=75.05  Aligned_cols=115  Identities=13%  Similarity=0.113  Sum_probs=70.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-------~   95 (209)
                      ++|+|+||+|++|.+++..|++.|+  +|+++++++..  ....++.... ...+..+. +   .+++++++       .
T Consensus        27 k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  103 (302)
T 1w6u_A           27 KVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKVAG  103 (302)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999998  99999997421  1122222110 00111111 1   11233333       3


Q ss_pred             CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHh----hCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAK----YCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~----~~p~~~viv~sn  146 (209)
                      ..|+||++||.....   ..+   ....+..|+.....+.+.+.+    ....++++++|.
T Consensus       104 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  164 (302)
T 1w6u_A          104 HPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT  164 (302)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence            569999999965321   122   334567788777766665543    234567777764

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=98.44  E-value=1.1e-06  Score=72.83  Aligned_cols=115  Identities=15%  Similarity=0.193  Sum_probs=70.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCcceeEee-cCCc---hhhh------cCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GNDQ---LGQA------LEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------~~~a   97 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.|+++. .....++.....  .+..+. +.+|   .++.      +...
T Consensus        32 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~g~i  107 (273)
T 3uf0_A           32 RTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRTDGVKEVADEIADGGG--SAEAVVADLADLEGAANVAEELAATRRV  107 (273)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTHHHHHHHHHHTTTC--EEEEEECCTTCHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHhcCCC
Confidence            5799999999999999999999999  9999997542 222333333221  121111 1112   1111      2478


Q ss_pred             CEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           98 DVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        98 D~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      |++|++||......   .+   ....+..|+.....+.+.+...   ...+.||++|..
T Consensus       108 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~  166 (273)
T 3uf0_A          108 DVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASM  166 (273)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             cEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcch
Confidence            99999999764221   12   2345677877776666655322   245678887643

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=98.44  E-value=1.2e-06  Score=71.59  Aligned_cols=114  Identities=21%  Similarity=0.229  Sum_probs=68.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCccee-EeecCCchhhhcC-------CCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVA-GYMGNDQLGQALE-------DSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~-~~~~~~d~~~a~~-------~aD   98 (209)
                      ++++||||+|++|.+++..|++.|.  +|++.|+++...  ...++.. ... .+. ++...++++++++       +.|
T Consensus        13 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~-~~~~D~~d~~~v~~~~~~~~~~~g~iD   88 (263)
T 3ak4_A           13 RKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDVMAAQAVVAGLEN-GGF-AVEVDVTKRASVDAAMQKAIDALGGFD   88 (263)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCTT-CCE-EEECCTTCHHHHHHHHHHHHHHHTCCC
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-CCe-EEEEeCCCHHHHHHHHHHHHHHcCCCC
Confidence            5899999999999999999999999  999999975221  1122221 100 000 0101112334444       799


Q ss_pred             EEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh----CCCeEEEEecC
Q 028437           99 VVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN  146 (209)
Q Consensus        99 ~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~----~p~~~viv~sn  146 (209)
                      ++|++||......   .+   ....+..|+.....+.+.+.++    ...+.++++|.
T Consensus        89 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  146 (263)
T 3ak4_A           89 LLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTAS  146 (263)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence            9999999753211   12   2345667776666665554432    22467777764

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=98.44  E-value=1.5e-06  Score=71.29  Aligned_cols=111  Identities=18%  Similarity=0.220  Sum_probs=69.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEee----cCCchhhhcC-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYM----GNDQLGQALE-------   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~----~~~d~~~a~~-------   95 (209)
                      ++|+|+||+|++|.+++..|+++|+  +|++.++++...  ...++...     +..+.    ..++++++++       
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~D~~~~~~v~~~~~~~~~~~g   80 (260)
T 1nff_A            8 KVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADA-----ARYVHLDVTQPAQWKAAVDTAVTAFG   80 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGG-----EEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcC-----ceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999999999  999999975221  11222211     11110    1112334444       


Q ss_pred             CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHH----HHHHHHHHhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~snP  147 (209)
                      +.|++|++||.....   ..+   ....+..|+...    +.+++.+++. ..+++|++|..
T Consensus        81 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~  141 (260)
T 1nff_A           81 GLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSI  141 (260)
T ss_dssp             CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEeeh
Confidence            899999999975321   122   234567787766    4555555544 35678887653

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.44  E-value=3.1e-07  Score=73.74  Aligned_cols=108  Identities=19%  Similarity=0.218  Sum_probs=69.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC------CCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE------DSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~------~aD~Vi~  102 (209)
                      ++|+|+||+|++|.+++..|+++|+  +|+++++++. .........+    +.   ..++++++++      +.|++|+
T Consensus         3 k~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~-~~~~~~~~~D----~~---~~~~~~~~~~~~~~~~~~d~li~   72 (242)
T 1uay_A            3 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRRE-GEDLIYVEGD----VT---REEDVRRAVARAQEEAPLFAVVS   72 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCC-SSSSEEEECC----TT---CHHHHHHHHHHHHHHSCEEEEEE
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEccCcc-ccceEEEeCC----CC---CHHHHHHHHHHHHhhCCceEEEE
Confidence            5899999999999999999999998  9999999643 1000000011    10   0112334444      7899999


Q ss_pred             cCCCCCCCC---C-------ChhHHHHHHHHHHHHHHHHHHhhC---C------CeEEEEecC
Q 028437          103 PAGVPRKPG---M-------TRDDLFNINAGIVKDLCSAIAKYC---P------NAIVNMISN  146 (209)
Q Consensus       103 ~ag~~~~~g---~-------~r~~~~~~N~~~~~~i~~~i~~~~---p------~~~viv~sn  146 (209)
                      +||......   .       +..+.+..|+.....+.+.+.+..   +      .+++|++|.
T Consensus        73 ~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS  135 (242)
T 1uay_A           73 AAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTAS  135 (242)
T ss_dssp             CCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECC
T ss_pred             cccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCC
Confidence            998754221   1       234556788888877777766542   1      237777764

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=98.43  E-value=8.2e-07  Score=73.02  Aligned_cols=115  Identities=10%  Similarity=0.033  Sum_probs=69.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhh-------hcCCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQ-------ALEDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~-------a~~~aD~V  100 (209)
                      ++++||||+|++|.+++..|++.|.  +|++.|+++... ...+.+.... .+. ++...++.++       .+...|++
T Consensus        28 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~~~-~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l  103 (260)
T 3gem_A           28 APILITGASQRVGLHCALRLLEHGH--RVIISYRTEHAS-VTELRQAGAV-ALYGDFSCETGIMAFIDLLKTQTSSLRAV  103 (260)
T ss_dssp             CCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESSCCHH-HHHHHHHTCE-EEECCTTSHHHHHHHHHHHHHHCSCCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCChHHH-HHHHHhcCCe-EEECCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            5799999999999999999999998  999999975321 1112111110 000 0000111222       23478999


Q ss_pred             EEcCCCCCCCC--CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437          101 IIPAGVPRKPG--MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus       101 i~~ag~~~~~g--~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      |++||......  .+   ....+..|+.....+.+.+.++   ...+.+|++|..
T Consensus       104 v~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~  158 (260)
T 3gem_A          104 VHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDD  158 (260)
T ss_dssp             EECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred             EECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECCh
Confidence            99999754322  12   2235677877766666665443   234678888643

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=98.43  E-value=4.3e-07  Score=73.15  Aligned_cols=115  Identities=20%  Similarity=0.240  Sum_probs=70.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-ecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhcC------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQALE------   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~-D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~------   95 (209)
                      ++|+|+||+|++|.+++..|++.|+  +|++. ++++..  ....++....  .++..+.    ..++++++++      
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAW   77 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999998  88884 665321  1112222111  0111111    1112333333      


Q ss_pred             -CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           96 -DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        96 -~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                       +.|+||++||......   .+   ..+.+..|+.....+.+.+.++   ...+++|++|..
T Consensus        78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  139 (244)
T 1edo_A           78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASV  139 (244)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCT
T ss_pred             CCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECCh
Confidence             7899999999764221   12   2345677888777666666543   245678887643

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=98.43  E-value=7.8e-07  Score=73.22  Aligned_cols=110  Identities=19%  Similarity=0.169  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhh-------cCCCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA-------LEDSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a-------~~~aD~Vi  101 (209)
                      ++|+|+||+|++|..++..|++.|.  +|+++++++..+........    ++.   ..++++++       +.+.|++|
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~----Dl~---~~~~v~~~~~~~~~~~g~iD~lv   79 (264)
T 2dtx_A            9 KVVIVTGASMGIGRAIAERFVDEGS--KVIDLSIHDPGEAKYDHIEC----DVT---NPDQVKASIDHIFKEYGSISVLV   79 (264)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSCCCSCSSEEEEC----CTT---CHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEecCcccCCceEEEEe----cCC---CHHHHHHHHHHHHHHcCCCCEEE
Confidence            5899999999999999999999999  99999997532100000000    000   01122233       33799999


Q ss_pred             EcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437          102 IPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus       102 ~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      ++||.....   ..+   ....+..|+.....+.+.+.++   ...+++|++|..
T Consensus        80 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~  134 (264)
T 2dtx_A           80 NNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSV  134 (264)
T ss_dssp             ECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCG
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence            999975321   112   3345677887766666665543   234678887643

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.42  E-value=6.7e-07  Score=72.70  Aligned_cols=113  Identities=23%  Similarity=0.235  Sum_probs=70.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEeecCCchhhhc-------CCCCE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQAL-------EDSDV   99 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~-------~~aD~   99 (209)
                      ++++|+||+|.+|..++..|+++|+  +|++.++++...  ...++.......++.   ..+++++++       ...|+
T Consensus         6 k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~~~g~id~   80 (245)
T 1uls_A            6 KAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVGAHPVVMDVA---DPASVERGFAEALAHLGRLDG   80 (245)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTTCEEEECCTT---CHHHHHHHHHHHHHHHSSCCE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcCCEEEEecCC---CHHHHHHHHHHHHHHcCCCCE
Confidence            5899999999999999999999999  999999974211  111111000000110   011222333       35899


Q ss_pred             EEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437          100 VIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus       100 Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      +|++||......   .+   ....+..|+.....+.+.+.++   ...++++++|.
T Consensus        81 lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS  136 (245)
T 1uls_A           81 VVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTAS  136 (245)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence            999999754211   12   2345678888777777666544   23567888764

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=98.42  E-value=1.1e-06  Score=71.82  Aligned_cols=116  Identities=14%  Similarity=0.081  Sum_probs=69.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-cC---Cchhhhc-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-GN---DQLGQAL-------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~---~d~~~a~-------   94 (209)
                      .++|+|+||+|++|.+++..|++.|+  +|+++++++..  ....++.....  .+..+. +.   +++++++       
T Consensus        14 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (266)
T 1xq1_A           14 AKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMF   89 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999998  99999997421  11222222111  111111 11   1223333       


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        95 -~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                       .+.|+||++||.....   ..+   ..+.+..|+.....+.+.+.+.   ....++|++|..
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~  152 (266)
T 1xq1_A           90 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSI  152 (266)
T ss_dssp             TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC--
T ss_pred             CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence             5789999999875321   112   2345678888877777766321   234577777654

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=98.42  E-value=3.7e-07  Score=74.73  Aligned_cols=115  Identities=17%  Similarity=0.192  Sum_probs=73.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec-CCch--hHHHhhcCCCCCcceeEee----cCCchhhhcC-----
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTP--GVAADVGHINTRSEVAGYM----GNDQLGQALE-----   95 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~-~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~-----   95 (209)
                      .++|+|+||+|++|++++..|++.|+  +|+++++ ++..  ....++.....  ++..+.    ..++++++++     
T Consensus        21 ~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           21 GKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVSH   96 (274)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999998  9999998 4321  11222322111  111111    1112334444     


Q ss_pred             --CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           96 --DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        96 --~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                        +.|+||++||......   .+   ..+.+..|+.....+.+.+.+.. ..+++|++|.
T Consensus        97 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  156 (274)
T 1ja9_A           97 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS  156 (274)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcC
Confidence              7899999998753211   12   23467789888888888877653 1267777764

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=98.42  E-value=6.3e-06  Score=70.76  Aligned_cols=117  Identities=21%  Similarity=0.257  Sum_probs=74.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch---------hHHHhhcCCCCCcceeEee-c---CCchhhhc-
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---------GVAADVGHINTRSEVAGYM-G---NDQLGQAL-   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~---------~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-   94 (209)
                      +.++||||+|.||.+++..|++.|.  +|++++++...         ....++.....  .+..+. +   .+++++++ 
T Consensus        46 k~vlVTGas~GIG~aia~~La~~Ga--~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~  121 (346)
T 3kvo_A           46 CTVFITGASRGIGKAIALKAAKDGA--NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGG--KALPCIVDVRDEQQISAAVE  121 (346)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHH
T ss_pred             CEEEEeCCChHHHHHHHHHHHHCCC--EEEEEECChhhhhhhHHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHH
Confidence            4799999999999999999999998  99999997421         11222322211  111111 1   11222333 


Q ss_pred             ------CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCC
Q 028437           95 ------EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVN  149 (209)
Q Consensus        95 ------~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP~~  149 (209)
                            .+.|++|++||......   .+   ....+..|+.....+.+.+..+   ...+.||++|.+..
T Consensus       122 ~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~  191 (346)
T 3kvo_A          122 KAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLN  191 (346)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence                  48999999999753221   22   2345778888877777776543   34578888887665

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=98.42  E-value=4.8e-07  Score=73.25  Aligned_cols=116  Identities=14%  Similarity=0.160  Sum_probs=70.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhhc-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQAL-------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-------   94 (209)
                      .++++||||+|++|.+++..|++.|.  +|++.++++..  ....++.....  ++..+. +   .++.++.+       
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEKGF--KARGLVLNISDIESIQNFFAEIKAEN   80 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  99999997521  12222322211  111111 1   11222222       


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      ...|++|++||......   .+   ....+..|+.....+.+.+.+.   .+.++++++|..
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~  142 (247)
T 3lyl_A           81 LAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSV  142 (247)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCT
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcch
Confidence            35799999999764221   12   2345677877766666554432   245678888753

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=98.42  E-value=1.3e-06  Score=71.02  Aligned_cols=113  Identities=17%  Similarity=0.213  Sum_probs=71.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCC--CCcceeEeecCCchhhhc-------CCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHIN--TRSEVAGYMGNDQLGQAL-------EDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~--~~~~v~~~~~~~d~~~a~-------~~a   97 (209)
                      ++++|+||+|.+|.+++..|++.|.  +|++.|+++..  ....++....  ...++..   .++.++++       ...
T Consensus         7 k~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~~~~~g~i   81 (247)
T 3rwb_A            7 KTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASIGKKARAIAADISD---PGSVKALFAEIQALTGGI   81 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEEECCCCTTC---HHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCceEEEEcCCCC---HHHHHHHHHHHHHHCCCC
Confidence            5899999999999999999999999  99999997521  1222231110  0111111   11222333       378


Q ss_pred             CEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHH----HHhhCCCeEEEEecC
Q 028437           98 DVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (209)
Q Consensus        98 D~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~----i~~~~p~~~viv~sn  146 (209)
                      |++|++||......   .+   ....+..|+.....+.+.    +++..+.++++++|.
T Consensus        82 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  140 (247)
T 3rwb_A           82 DILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIAS  140 (247)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECc
Confidence            99999999754221   12   234567777766665555    666555678888874

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=98.42  E-value=6.9e-07  Score=72.99  Aligned_cols=110  Identities=19%  Similarity=0.227  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEee-c---CCchhhhcC-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYM-G---NDQLGQALE-------   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~-~---~~d~~~a~~-------   95 (209)
                      ++++|+||+|.+|.+++..|++.|.  +|++.++++...  ...++..     .+..+. +   .++++++++       
T Consensus         6 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (254)
T 1hdc_A            6 KTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGD-----AARYQHLDVTIEEDWQRVVAYAREEFG   78 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGG-----GEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----ceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999999  999999975211  1122211     111111 1   112333333       


Q ss_pred             CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHH----HHHHHHHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVK----DLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~sn  146 (209)
                      +.|++|++||.....   ..+   ....+..|+....    .+++.+++. ..+++|++|.
T Consensus        79 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS  138 (254)
T 1hdc_A           79 SVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA-GGGSIVNISS  138 (254)
T ss_dssp             CCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECc
Confidence            899999999975421   112   2345667766554    555666554 3567888764

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.42  E-value=8.1e-07  Score=74.53  Aligned_cols=69  Identities=20%  Similarity=0.316  Sum_probs=49.2

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        24 ~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      +|..+|||+|+|+ |.+|..++..|++.|+  +|+++|+++....  .+.+..    +..   +++++++++ +|+||++
T Consensus        11 ~M~~~~~I~vIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~-aDvvi~~   77 (296)
T 3qha_A           11 HTTEQLKLGYIGL-GNMGAPMATRMTEWPG--GVTVYDIRIEAMT--PLAEAG----ATL---ADSVADVAA-ADLIHIT   77 (296)
T ss_dssp             ----CCCEEEECC-STTHHHHHHHHTTSTT--CEEEECSSTTTSH--HHHHTT----CEE---CSSHHHHTT-SSEEEEC
T ss_pred             cccCCCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC----CEE---cCCHHHHHh-CCEEEEE
Confidence            3444579999999 9999999999999999  9999999763221  222221    111   346788888 9999999


Q ss_pred             CC
Q 028437          104 AG  105 (209)
Q Consensus       104 ag  105 (209)
                      ..
T Consensus        78 vp   79 (296)
T 3qha_A           78 VL   79 (296)
T ss_dssp             CS
T ss_pred             CC
Confidence            63

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=98.42  E-value=1.2e-06  Score=70.96  Aligned_cols=110  Identities=19%  Similarity=0.239  Sum_probs=67.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcce-eEee----cCCchhhhc------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEV-AGYM----GNDQLGQAL------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v-~~~~----~~~d~~~a~------~   95 (209)
                      ++++|+||+|++|++++..|+++|.  +|+++++++..  ....++..     .+ ..+.    ..+++++++      .
T Consensus        12 k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (254)
T 2wsb_A           12 ACAAVTGAGSGIGLEICRAFAASGA--RLILIDREAAALDRAAQELGA-----AVAARIVADVTDAEAMTAAAAEAEAVA   84 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcc-----cceeEEEEecCCHHHHHHHHHHHHhhC
Confidence            5899999999999999999999998  99999997421  11222211     11 1110    011233333      5


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHH----HHHHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLC----SAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~----~~i~~~~p~~~viv~sn  146 (209)
                      +.|+||++||......   .+   ..+.+..|+.....+.    +.+++. ..++++++|.
T Consensus        85 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~isS  144 (254)
T 2wsb_A           85 PVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVAR-GAGAIVNLGS  144 (254)
T ss_dssp             CCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEec
Confidence            7899999999754211   12   2345667877744444    444443 3567777764

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=98.42  E-value=1.1e-06  Score=71.79  Aligned_cols=114  Identities=16%  Similarity=0.183  Sum_probs=69.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-------~   95 (209)
                      ++|+|+||+|++|.+++..|++.|.  +|+++++++..  ....++.....  .+..+. +   .++.++++       .
T Consensus        15 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g   90 (260)
T 2zat_A           15 KVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDRTVATLQGEGL--SVTGTVCHVGKAEDRERLVAMAVNLHG   90 (260)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999998  99999997521  11222322111  111111 1   11222333       3


Q ss_pred             CCCEEEEcCCCCCCCC----CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      +.|++|++||.....+    .+   ..+.+..|+.....+.+.+.++   ...+.+|++|.
T Consensus        91 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS  151 (260)
T 2zat_A           91 GVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSS  151 (260)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence            7999999999743111    12   2345677877776665554322   34567777764

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=98.41  E-value=1.5e-06  Score=71.99  Aligned_cols=127  Identities=10%  Similarity=0.074  Sum_probs=76.4

Q ss_pred             ccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCch
Q 028437           17 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQL   90 (209)
Q Consensus        17 ~~~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~   90 (209)
                      ..+.|.+.+-+.++++||||+|.+|.+++..|++.|.  +|++.+++...  ....++.... ..++..+. +   .++.
T Consensus        16 ~~~~~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v   92 (277)
T 4fc7_A           16 YRHLFCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPPAV   92 (277)
T ss_dssp             CCCSBCTTTTTTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHH
T ss_pred             CCCCCCccccCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHH
Confidence            3334444444456899999999999999999999999  99999997421  1222222110 00111111 0   1122


Q ss_pred             hhh-------cCCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           91 GQA-------LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        91 ~~a-------~~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      +++       +...|++|++||......   .+   ....+..|+.....+.+.+...   ...+.||++|.
T Consensus        93 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS  164 (277)
T 4fc7_A           93 MAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITA  164 (277)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECC
T ss_pred             HHHHHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECc
Confidence            222       347899999999653211   12   2345677888777777766432   23567888764

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=98.41  E-value=1.2e-06  Score=71.03  Aligned_cols=113  Identities=16%  Similarity=0.257  Sum_probs=68.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec-CCch--hHHHhhcCCCCCcceeEee-c---CCchhhhc-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQAL-------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~-~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-------   94 (209)
                      ++++||||+|.+|.+++..|++.|+  +|++.++ ++..  ....++.....  .+..+. +   .+++++++       
T Consensus         5 k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (246)
T 2uvd_A            5 KVALVTGASRGIGRAIAIDLAKQGA--NVVVNYAGNEQKANEVVDEIKKLGS--DAIAVRADVANAEDVTNMVKQTVDVF   80 (246)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999999  9999998 5321  11222322111  111111 1   11233333       


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      .+.|++|++||......   .+   ....+..|+..    ++.+.+.+++. ..+++|++|.
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS  141 (246)
T 2uvd_A           81 GQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQ-RHGRIVNIAS  141 (246)
T ss_dssp             SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECC
Confidence            37999999999764211   12   23456778776    44455555443 3467888764

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=98.41  E-value=1.1e-06  Score=72.47  Aligned_cols=116  Identities=16%  Similarity=0.125  Sum_probs=71.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec-CCch--hHHHhhcCCCCCcceeE----eecC----Cchhhhc---
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTP--GVAADVGHINTRSEVAG----YMGN----DQLGQAL---   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~-~~~~--~~~~dl~~~~~~~~v~~----~~~~----~d~~~a~---   94 (209)
                      ++++||||+|++|.+++..|++.|.  +|+++++ ++..  ....++.... ...+..    +...    +++++++   
T Consensus        12 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   88 (276)
T 1mxh_A           12 PAAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIIDCS   88 (276)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHhc-CCceEEEeccCCCccccHHHHHHHHHHH
Confidence            4799999999999999999999998  9999999 6421  1122222110 001111    1111    1223333   


Q ss_pred             ----CCCCEEEEcCCCCCCCC---CC--------------hhHHHHHHHHHHHHHHHHHHhhC--CC------eEEEEec
Q 028437           95 ----EDSDVVIIPAGVPRKPG---MT--------------RDDLFNINAGIVKDLCSAIAKYC--PN------AIVNMIS  145 (209)
Q Consensus        95 ----~~aD~Vi~~ag~~~~~g---~~--------------r~~~~~~N~~~~~~i~~~i~~~~--p~------~~viv~s  145 (209)
                          ...|++|++||......   .+              ....+..|+.....+.+.+.++-  ..      +++|++|
T Consensus        89 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~is  168 (276)
T 1mxh_A           89 FRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLC  168 (276)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEEC
T ss_pred             HHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEC
Confidence                37899999999753211   11              22457788888888888777642  22      6788887


Q ss_pred             CC
Q 028437          146 NP  147 (209)
Q Consensus       146 nP  147 (209)
                      ..
T Consensus       169 S~  170 (276)
T 1mxh_A          169 DA  170 (276)
T ss_dssp             CG
T ss_pred             ch
Confidence            53

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.41  E-value=2.4e-06  Score=69.79  Aligned_cols=113  Identities=18%  Similarity=0.213  Sum_probs=70.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-HHhhcCCCCCcceeEeecCCchhhh-------cCCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHINTRSEVAGYMGNDQLGQA-------LEDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-~~dl~~~~~~~~v~~~~~~~d~~~a-------~~~aD~V  100 (209)
                      ++++||||+|++|.+++..|++.|+  +|++.++++.... ..++.......++.   ..++++++       +...|++
T Consensus         7 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~~~g~iD~l   81 (256)
T 2d1y_A            7 KGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGGAFFQVDLE---DERERVRFVEEAAYALGRVDVL   81 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTCEEEECCTT---CHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHhhCCEEEeeCC---CHHHHHHHHHHHHHHcCCCCEE
Confidence            5799999999999999999999998  9999999753211 12221100000111   01122222       3478999


Q ss_pred             EEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437          101 IIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus       101 i~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      |++||.....   ..+   ....+..|+.....+.+.+.++   ...+++|++|.
T Consensus        82 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS  136 (256)
T 2d1y_A           82 VNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVAS  136 (256)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            9999975321   122   2345678888777776665443   23577888764

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=98.40  E-value=1.4e-06  Score=71.87  Aligned_cols=116  Identities=25%  Similarity=0.285  Sum_probs=71.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEeecCCchhhhc-------CCCCE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQAL-------EDSDV   99 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~-------~~aD~   99 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.|+++.  .....++.... ....-++...++.++++       ...|+
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   88 (271)
T 3tzq_B           12 KVAIITGACGGIGLETSRVLARAGA--RVVLADLPETDLAGAAASVGRGA-VHHVVDLTNEVSVRALIDFTIDTFGRLDI   88 (271)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSCHHHHHHHHCTTC-EEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCCCe-EEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5799999999999999999999998  9999999753  22222332111 00000010111233333       37899


Q ss_pred             EEEcCCCCCC-CC----CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437          100 VIIPAGVPRK-PG----MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus       100 Vi~~ag~~~~-~g----~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      +|++||.... ..    .+   ....+..|+.....+.+.+..+   ...+.+|++|..
T Consensus        89 lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~  147 (271)
T 3tzq_B           89 VDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSA  147 (271)
T ss_dssp             EEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCG
T ss_pred             EEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCH
Confidence            9999997632 11    12   2345778888777777666321   346778888643

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.40  E-value=1.1e-06  Score=72.46  Aligned_cols=116  Identities=16%  Similarity=0.215  Sum_probs=68.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhh---cCCCCCcceeEee----cCCchhhhcC----
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADV---GHINTRSEVAGYM----GNDQLGQALE----   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl---~~~~~~~~v~~~~----~~~d~~~a~~----   95 (209)
                      ++++||||+|++|.+++..|++.|.  +|+++++++..  ....++   ....  ..+..+.    ..++++++++    
T Consensus         7 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   82 (278)
T 1spx_A            7 KVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSE--QNVNSVVADVTTDAGQDEILSTTLG   82 (278)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCG--GGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcccCC--CceeEEecccCCHHHHHHHHHHHHH
Confidence            4799999999999999999999998  99999997421  112223   1111  1122111    1112334444    


Q ss_pred             ---CCCEEEEcCCCCCCC---CC----C---hhHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecCCC
Q 028437           96 ---DSDVVIIPAGVPRKP---GM----T---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNPV  148 (209)
Q Consensus        96 ---~aD~Vi~~ag~~~~~---g~----~---r~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~snP~  148 (209)
                         +.|++|++||.....   ..    +   ....+..|+.....+.+.+.+.-  ..+.+|++|...
T Consensus        83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~  150 (278)
T 1spx_A           83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIA  150 (278)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTT
T ss_pred             HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEeccc
Confidence               899999999875321   11    2   23356777776666666555431  126788876543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=98.40  E-value=2.5e-06  Score=70.47  Aligned_cols=114  Identities=20%  Similarity=0.247  Sum_probs=74.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC------------c--hhHHHhhcCCCCCcceeEee-c---CCch
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN------------T--PGVAADVGHINTRSEVAGYM-G---NDQL   90 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~------------~--~~~~~dl~~~~~~~~v~~~~-~---~~d~   90 (209)
                      ++++||||+|.+|.+++..|++.|.  +|+++|++.            .  .....++....  .++..+. +   .++.
T Consensus        11 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v   86 (287)
T 3pxx_A           11 KVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAAV   86 (287)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHHH
Confidence            4799999999999999999999999  999999861            0  01111222111  1111111 1   1122


Q ss_pred             hhhc-------CCCCEEEEcCCCCCCCC-C---ChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           91 GQAL-------EDSDVVIIPAGVPRKPG-M---TRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        91 ~~a~-------~~aD~Vi~~ag~~~~~g-~---~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      ++++       ...|++|++||...... .   +....+..|+.....+.+.+.++- ..+.+|++|.
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  154 (287)
T 3pxx_A           87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS  154 (287)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence            2333       37899999999754221 2   234567889999999999888764 4567888775

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=98.40  E-value=1.6e-06  Score=71.07  Aligned_cols=114  Identities=19%  Similarity=0.212  Sum_probs=69.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-cCCc---hhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~~   95 (209)
                      ++++||||+|.+|.+++..|++.|.  +|+++++++..  ....++.....  .+..+. +-+|   ++++       +.
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (262)
T 1zem_A            8 KVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRDFG   83 (262)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            5899999999999999999999998  99999997421  12223332211  111111 1112   2222       34


Q ss_pred             CCCEEEEcCCCC-CC-C--CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           96 DSDVVIIPAGVP-RK-P--GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~-~~-~--g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ..|++|++||.. .. +  ..+   ....+..|+.....+.+.+.++   ...+.+|++|.
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS  144 (262)
T 1zem_A           84 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTAS  144 (262)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            789999999975 21 1  112   2345667877666666555443   23567887764

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=98.40  E-value=1e-06  Score=71.70  Aligned_cols=114  Identities=15%  Similarity=0.187  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec-CCch--hHHHhhcCCCCCcceeEee-c---CCchhhhcC------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQALE------   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~-~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~~------   95 (209)
                      ++|+|+||+|++|++++..|++.|.  +|+++++ ++..  ....++....  ..+..+. +   .++++++++      
T Consensus         8 k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (261)
T 1gee_A            8 KVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999998  9999999 5321  1122222111  1111111 1   112233333      


Q ss_pred             -CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHh----hCCCeEEEEecC
Q 028437           96 -DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAK----YCPNAIVNMISN  146 (209)
Q Consensus        96 -~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~----~~p~~~viv~sn  146 (209)
                       +.|+||++||.....   ..+   ..+.+..|+.....+.+.+.+    ..+.+++|++|.
T Consensus        84 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  145 (261)
T 1gee_A           84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS  145 (261)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence             789999999975321   112   234566777666655555443    332567887764

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=98.40  E-value=8.7e-07  Score=71.89  Aligned_cols=112  Identities=18%  Similarity=0.179  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee-cCCc---hh---hhcCCCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LG---QALEDSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~---~a~~~aD~Vi  101 (209)
                      ++++|+||+|++|.+++..|++.|.  +|++.|+++..  ..++.+..   .+..+. +.+|   ++   +.+.+.|++|
T Consensus         7 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~--~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~id~lv   79 (246)
T 2ag5_A            7 KVIILTAAAQGIGQAAALAFAREGA--KVIATDINESK--LQELEKYP---GIQTRVLDVTKKKQIDQFANEVERLDVLF   79 (246)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HGGGGGST---TEEEEECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHhcc---CceEEEeeCCCHHHHHHHHHHhCCCCEEE
Confidence            5899999999999999999999998  99999997421  11122110   111111 1112   22   2256789999


Q ss_pred             EcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437          102 IPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus       102 ~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      ++||......   .+   ....+..|+.....+.+.+.++   ...+++|++|..
T Consensus        80 ~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~  134 (246)
T 2ag5_A           80 NVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSV  134 (246)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCS
T ss_pred             ECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEech
Confidence            9999754211   12   2334667777666666655432   235678887653

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=98.39  E-value=1.8e-06  Score=72.17  Aligned_cols=132  Identities=12%  Similarity=0.091  Sum_probs=77.4

Q ss_pred             ccccccccccCCCCCC-CeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCCCcc-ee-Eeec
Q 028437           13 AKPAGARGYSSESVPD-RKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSE-VA-GYMG   86 (209)
Q Consensus        13 ~~~~~~~~~~~~~~~~-~kI~IiGasG--~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~~~-v~-~~~~   86 (209)
                      ++|.|..++.++|.-. ++++||||+|  .+|.+++..|++.|.  +|++.|+++... ...++........ +. ++..
T Consensus        14 ~~~~gp~sm~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d   91 (296)
T 3k31_A           14 AQTQGPGSMRTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSD   91 (296)
T ss_dssp             -------CCCCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTC
T ss_pred             ecccCCccccchhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCC
Confidence            4566666776655433 5799999987  999999999999999  999999975211 1111111100000 00 0101


Q ss_pred             CCchhhhc-------CCCCEEEEcCCCCCC-----C--CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           87 NDQLGQAL-------EDSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        87 ~~d~~~a~-------~~aD~Vi~~ag~~~~-----~--g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      .++.++++       ...|++|++||....     +  ..+   ....+..|+.....+.+.+..+- ..+.||++|.
T Consensus        92 ~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS  169 (296)
T 3k31_A           92 AESVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY  169 (296)
T ss_dssp             HHHHHHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence            11222233       478999999997632     1  122   33457789988888888887764 3567888764

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=98.39  E-value=1.8e-06  Score=69.34  Aligned_cols=116  Identities=18%  Similarity=0.160  Sum_probs=68.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee----cCCchhhhc-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM----GNDQLGQAL-------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------   94 (209)
                      +++++|+||+|.+|.+++..|++.|.  +|++.+++..  .....++.... ...+..+.    ..++.++++       
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERF   78 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence            34799999999999999999999999  9999999742  11222222100 00111110    111233333       


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh--CCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~--~p~~~viv~sn  146 (209)
                      ...|++|++||......   .+   ....+..|+.....+.+.+.++  ...+.+++++.
T Consensus        79 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS  138 (235)
T 3l77_A           79 GDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTS  138 (235)
T ss_dssp             SSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             CCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEec
Confidence            37899999999754221   12   2345677877766666665443  12344555543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.39  E-value=1.8e-06  Score=73.27  Aligned_cols=67  Identities=24%  Similarity=0.354  Sum_probs=51.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      .+|||+|+|+ |.+|..++..|+..|+  +|+++|+++.  ...++....    +..   .+++++++++||+||++..
T Consensus        30 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~--~~~~l~~~g----~~~---~~~~~e~~~~aDvVi~~vp   96 (320)
T 4dll_A           30 YARKITFLGT-GSMGLPMARRLCEAGY--ALQVWNRTPA--RAASLAALG----ATI---HEQARAAARDADIVVSMLE   96 (320)
T ss_dssp             CCSEEEEECC-TTTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTT----CEE---ESSHHHHHTTCSEEEECCS
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHhCCC--eEEEEcCCHH--HHHHHHHCC----CEe---eCCHHHHHhcCCEEEEECC
Confidence            4579999999 9999999999999999  9999999753  223333332    122   2467889999999999863

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=98.39  E-value=2.1e-06  Score=71.01  Aligned_cols=116  Identities=15%  Similarity=0.115  Sum_probs=72.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCC-cceeEee-cCC---chhhhc-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTR-SEVAGYM-GND---QLGQAL-------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~-~~v~~~~-~~~---d~~~a~-------   94 (209)
                      ++++||||+|++|.+++..|++.|.  +|+++|+++.  .....++...... ..+..+. +-+   +.++++       
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (281)
T 3svt_A           12 RTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWH   89 (281)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999999  9999999752  2223334332210 1222211 111   222233       


Q ss_pred             CCCCEEEEcCCCCCCCC----CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ...|++|++||.....+    .+   ....+..|+.....+++.+.++   ...+.+|++|.
T Consensus        90 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS  151 (281)
T 3svt_A           90 GRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISS  151 (281)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeC
Confidence            36799999999732221    22   2345677887777776665543   34578888764

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=98.38  E-value=1.9e-06  Score=71.43  Aligned_cols=115  Identities=18%  Similarity=0.223  Sum_probs=70.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCC--CcceeEeecCCchhhhc-------CC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINT--RSEVAGYMGNDQLGQAL-------ED   96 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~--~~~v~~~~~~~d~~~a~-------~~   96 (209)
                      .++++||||+|.+|.+++..|++.|.  +|++.|+++..  ....++.....  ..++.   ..++.++++       ..
T Consensus        27 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~~g~  101 (277)
T 4dqx_A           27 QRVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNEDAAVRVANEIGSKAFGVRVDVS---SAKDAESMVEKTTAKWGR  101 (277)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCTTEEEEECCTT---CHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCceEEEEecCC---CHHHHHHHHHHHHHHcCC
Confidence            35799999999999999999999999  99999997521  11222211100  00110   011222333       37


Q ss_pred             CCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           97 SDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        97 aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      .|++|++||.....   ..+   ....+..|+.....+.+.+.++   ...++||++|..
T Consensus       102 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~  161 (277)
T 4dqx_A          102 VDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSY  161 (277)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCG
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECch
Confidence            89999999975321   122   2345667877766666655433   235678888643

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=98.38  E-value=1.9e-06  Score=71.11  Aligned_cols=116  Identities=16%  Similarity=0.196  Sum_probs=70.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-c---CCchhhh-------c
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-G---NDQLGQA-------L   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a-------~   94 (209)
                      .++++||||+|.+|.+++..|++.|.  +|++.++++.  .....++.....  .+..+. +   .++.+++       +
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDAGG--TALAQVLDVTDRHSVAAFAQAAVDTW   79 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  9999999752  122223322211  111111 1   1122222       3


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      ...|++|++||......   .+   ....+..|+.....+.+.+...   ...+.||++|..
T Consensus        80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~  141 (264)
T 3tfo_A           80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSI  141 (264)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCH
Confidence            47899999999754221   12   2345677776665555444322   245778887643

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=98.38  E-value=1.2e-06  Score=70.91  Aligned_cols=112  Identities=13%  Similarity=0.147  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a-------~~   95 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.|+++..  ....++..     .+..+. +   .++.+++       +.
T Consensus         4 k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~g   76 (235)
T 3l6e_A            4 GHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLLGN-----AVIGIVADLAHHEDVDVAFAAAVEWGG   76 (235)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTSHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC-----CceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999999  99999997521  12222211     111111 0   1122222       33


Q ss_pred             CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~snP  147 (209)
                      ..|++|++||.....   ..+   ....+..|+.....+.+.+...-  ....++++|..
T Consensus        77 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~  136 (235)
T 3l6e_A           77 LPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSS  136 (235)
T ss_dssp             SCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred             CCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCH
Confidence            679999999975321   122   33457788887766666664432  23477777654

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=98.38  E-value=1.6e-06  Score=71.38  Aligned_cols=118  Identities=15%  Similarity=0.181  Sum_probs=69.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-ecCCc--hhHHHhhcCCCCCcceeEee-c---CCchhhh----
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANT--PGVAADVGHINTRSEVAGYM-G---NDQLGQA----   93 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~-D~~~~--~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a----   93 (209)
                      |.+.++|+||||+|.+|.+++..|++.|.  +|++. +++..  .....++....  ..+..+. +   .++++++    
T Consensus        23 m~~~k~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~   98 (272)
T 4e3z_A           23 MSDTPVVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITESG--GEAVAIPGDVGNAADIAAMFSAV   98 (272)
T ss_dssp             -CCSCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHH
Confidence            44456899999999999999999999998  88777 44421  11122222211  1111111 1   1122222    


Q ss_pred             ---cCCCCEEEEcCCCCCCCC----CC---hhHHHHHHHHHHHHHHHHHHhh------CCCeEEEEecC
Q 028437           94 ---LEDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKY------CPNAIVNMISN  146 (209)
Q Consensus        94 ---~~~aD~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~~~i~~~i~~~------~p~~~viv~sn  146 (209)
                         +...|++|++||....++    .+   ..+.+..|+.....+.+.+.+.      ...+.+|++|.
T Consensus        99 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS  167 (272)
T 4e3z_A           99 DRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSS  167 (272)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             HHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcc
Confidence               347899999999764322    12   2345677877666666555433      23567888764

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=98.38  E-value=1.2e-06  Score=70.98  Aligned_cols=114  Identities=18%  Similarity=0.161  Sum_probs=68.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC-Cch--hHHHhhcCCCCCcceeEee----cCCchhhhcC------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP--GVAADVGHINTRSEVAGYM----GNDQLGQALE------   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~-~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~------   95 (209)
                      ++|+||||+|++|++++..|+++|+  +|++++++ +..  ....++....  ..+..+.    ..++++++++      
T Consensus         8 k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (258)
T 3afn_B            8 KRVLITGSSQGIGLATARLFARAGA--KVGLHGRKAPANIDETIASMRADG--GDAAFFAADLATSEACQQLVDEFVAKF   83 (258)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCCchhhHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999999  99999997 421  1122232111  1121111    1112334444      


Q ss_pred             -CCCEEEEcCCC-CCCC---CCC---hhHHHHHHHHHHHHHHHHHHh----h----CCCeEEEEecC
Q 028437           96 -DSDVVIIPAGV-PRKP---GMT---RDDLFNINAGIVKDLCSAIAK----Y----CPNAIVNMISN  146 (209)
Q Consensus        96 -~aD~Vi~~ag~-~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~----~----~p~~~viv~sn  146 (209)
                       +.|+||++||. ....   ..+   ....+..|+.....+.+.+.+    .    .+..+++++|.
T Consensus        84 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS  150 (258)
T 3afn_B           84 GGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGS  150 (258)
T ss_dssp             SSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecc
Confidence             89999999986 3211   112   233566777766666554432    2    12267777764

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.38  E-value=7.2e-07  Score=72.85  Aligned_cols=100  Identities=15%  Similarity=0.118  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH------------HHhhcCCCCCcceeEeecCCchhh
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV------------AADVGHINTRSEVAGYMGNDQLGQ   92 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~------------~~dl~~~~~~~~v~~~~~~~d~~~   92 (209)
                      ....+||+|+|+ |.+|..++..|++.|+  +|+++|+++....            ..++.... . ...    ..+.++
T Consensus        16 ~~~~~kIgiIG~-G~mG~alA~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~----~~~~~e   86 (245)
T 3dtt_A           16 YFQGMKIAVLGT-GTVGRTMAGALADLGH--EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH-P-HVH----LAAFAD   86 (245)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHTCC-------CCHHHHGGGS-T-TCE----EEEHHH
T ss_pred             ccCCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc-C-cee----ccCHHH
Confidence            344579999998 9999999999999999  9999999753200            11222111 1 111    125678


Q ss_pred             hcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 028437           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus        93 a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~  148 (209)
                      ++++||+||++....         ...   +.+.++.   ....++..+|.++||.
T Consensus        87 ~~~~aDvVilavp~~---------~~~---~~~~~i~---~~~l~g~ivi~~s~~~  127 (245)
T 3dtt_A           87 VAAGAELVVNATEGA---------SSI---AALTAAG---AENLAGKILVDIANPL  127 (245)
T ss_dssp             HHHHCSEEEECSCGG---------GHH---HHHHHHC---HHHHTTSEEEECCCCE
T ss_pred             HHhcCCEEEEccCcH---------HHH---HHHHHhh---hhhcCCCEEEECCCCC
Confidence            899999999996321         111   2222331   2222677888899875

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=98.38  E-value=1.9e-06  Score=71.43  Aligned_cols=113  Identities=16%  Similarity=0.157  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a-------~~   95 (209)
                      ++++||||+|.+|..++..|++.|.  +|+++|+++..  ....++....   .+..+.    ..++++++       +.
T Consensus        30 k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (276)
T 2b4q_A           30 RIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRLSAYG---DCQAIPADLSSEAGARRLAQALGELSA  104 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHTTSS---CEEECCCCTTSHHHHHHHHHHHHHHCS
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---ceEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999998  99999997521  1223333211   111110    01122222       33


Q ss_pred             CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHH----HHHHHhhCC---CeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDL----CSAIAKYCP---NAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i----~~~i~~~~p---~~~viv~sn  146 (209)
                      ..|++|++||.....   ..+   ....+..|+.....+    ++.+++...   .+++|++|.
T Consensus       105 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS  168 (276)
T 2b4q_A          105 RLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGS  168 (276)
T ss_dssp             CCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence            789999999975321   112   234567787766444    444444432   267888764

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.38  E-value=7.4e-07  Score=71.62  Aligned_cols=92  Identities=21%  Similarity=0.252  Sum_probs=60.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEE-EecCCchhH--HHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLAL-YDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l-~D~~~~~~~--~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      +||||+|+|+ |.+|..++..|.+.|+  +|.+ +|+++....  ..++..     ...    .++ .++++++|+||++
T Consensus        22 ~mmkI~IIG~-G~mG~~la~~l~~~g~--~V~~v~~r~~~~~~~l~~~~g~-----~~~----~~~-~~~~~~aDvVila   88 (220)
T 4huj_A           22 SMTTYAIIGA-GAIGSALAERFTAAQI--PAIIANSRGPASLSSVTDRFGA-----SVK----AVE-LKDALQADVVILA   88 (220)
T ss_dssp             GSCCEEEEEC-HHHHHHHHHHHHHTTC--CEEEECTTCGGGGHHHHHHHTT-----TEE----ECC-HHHHTTSSEEEEE
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCCHHHHHHHHHHhCC-----Ccc----cCh-HHHHhcCCEEEEe
Confidence            3579999998 9999999999999998  8998 998753222  112211     111    123 4668999999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~  148 (209)
                      ...                ....++++.+.. .++..++-++||.
T Consensus        89 vp~----------------~~~~~v~~~l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A           89 VPY----------------DSIADIVTQVSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             SCG----------------GGHHHHHTTCSC-CTTCEEEECCCCB
T ss_pred             CCh----------------HHHHHHHHHhhc-cCCCEEEEcCCCC
Confidence            621                112344444443 3455777778876

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=98.37  E-value=1.1e-06  Score=72.85  Aligned_cols=116  Identities=16%  Similarity=0.101  Sum_probs=69.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCccee-EeecCCchhhhc-------CCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVA-GYMGNDQLGQAL-------EDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~-~~~~~~d~~~a~-------~~aD   98 (209)
                      +.++||||+|.+|.+++..|++.|.  +|++.|++...  ....++.... . .+. ++...++.++++       ...|
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~-~~~~Dv~d~~~v~~~~~~~~~~~g~iD  104 (272)
T 4dyv_A           29 KIAIVTGAGSGVGRAVAVALAGAGY--GVALAGRRLDALQETAAEIGDDA-L-CVPTDVTDPDSVRALFTATVEKFGRVD  104 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTSCC-E-EEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCe-E-EEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            4688999999999999999999999  99999997521  2222332111 0 000 010111223333       3899


Q ss_pred             EEEEcCCCCCCCC----CC---hhHHHHHHHHHHHH----HHHHHHhhC-CCeEEEEecCCC
Q 028437           99 VVIIPAGVPRKPG----MT---RDDLFNINAGIVKD----LCSAIAKYC-PNAIVNMISNPV  148 (209)
Q Consensus        99 ~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~~~----i~~~i~~~~-p~~~viv~snP~  148 (209)
                      ++|++||.....+    .+   ....+..|+.....    +.+.+.+.. +.+.||++|...
T Consensus       105 ~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~  166 (272)
T 4dyv_A          105 VLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSIS  166 (272)
T ss_dssp             EEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSS
T ss_pred             EEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchh
Confidence            9999999753211    22   23456778776444    444554433 257888887543

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=98.37  E-value=2.4e-06  Score=70.68  Aligned_cols=115  Identities=18%  Similarity=0.188  Sum_probs=72.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-------~   95 (209)
                      ++++|+||+|++|.+++..|++.|.  +|+++++++..  ....++.....  .+..+. +   .+++++++       .
T Consensus        23 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           23 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG   98 (277)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            5799999999999999999999998  99999997521  11223321111  111111 1   11222333       3


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh-----CCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY-----CPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~-----~p~~~viv~snP  147 (209)
                      +.|++|++||......   .+   ....+..|+.....+.+.+.+.     ...+++|++|..
T Consensus        99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~  161 (277)
T 2rhc_B           99 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAST  161 (277)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcc
Confidence            7899999999754211   12   2346778888888877776543     134678887643

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=98.37  E-value=4.4e-06  Score=67.38  Aligned_cols=110  Identities=21%  Similarity=0.251  Sum_probs=67.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchh-------hhcCCCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLG-------QALEDSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~-------~a~~~aD~Vi  101 (209)
                      ++++|+||+|.+|.+++..|++.|.  +|++.++++.. ...++.......+   +.. ++.+       +.+.+.|++|
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~--~V~~~~r~~~~-~~~~~~~~~~~~D---~~~-~~~~~~~~~~~~~~g~id~lv   75 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGY--RVAIASRNPEE-AAQSLGAVPLPTD---LEK-DDPKGLVKRALEALGGLHVLV   75 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHH-HHHHHTCEEEECC---TTT-SCHHHHHHHHHHHHTSCCEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHhhCcEEEecC---Cch-HHHHHHHHHHHHHcCCCCEEE
Confidence            4799999999999999999999998  99999997532 2222210000001   111 1222       2345899999


Q ss_pred             EcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecC
Q 028437          102 IPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (209)
Q Consensus       102 ~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~sn  146 (209)
                      ++||.....   ..+   ....+..|+.....+.+.+    ++. ..+++|++|.
T Consensus        76 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS  129 (239)
T 2ekp_A           76 HAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEA-GWGRVLFIGS  129 (239)
T ss_dssp             ECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECc
Confidence            999975321   122   2345566766665555554    333 3567877764

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=98.37  E-value=1.6e-06  Score=72.24  Aligned_cols=117  Identities=12%  Similarity=0.128  Sum_probs=72.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCC---CCCcceeEee-c---CCchhhhcC----
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHI---NTRSEVAGYM-G---NDQLGQALE----   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~---~~~~~v~~~~-~---~~d~~~a~~----   95 (209)
                      ++|+||||+|++|.+++..|++.|+  +|++++++...  ....++...   .....+..+. +   .++++++++    
T Consensus        19 k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   96 (303)
T 1yxm_A           19 QVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD   96 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999999998  99999997421  122233210   0011222211 1   112333333    


Q ss_pred             ---CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           96 ---DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        96 ---~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                         ..|+||++||......   .+   ....+..|+.....+++.+.+.   ...+.+|++|..
T Consensus        97 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~  160 (303)
T 1yxm_A           97 TFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVP  160 (303)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCC
T ss_pred             HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEee
Confidence               5899999999643211   12   2345778988888888876552   124677777654

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=98.37  E-value=2.1e-06  Score=70.05  Aligned_cols=114  Identities=25%  Similarity=0.299  Sum_probs=68.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhcC-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQALE-------   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~-------   95 (209)
                      ++++|+||+|.+|.+++..|++.|.  +|++.++++..  ....++.....  .+..+.    ..++++++++       
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999998  99999997521  11222322111  111111    1112333333       


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHH----HHHHHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i----~~~i~~~~p~~~viv~sn  146 (209)
                      +.|++|++||......   .+   ....+..|+.....+    .+.+.+..+.+++|++|.
T Consensus        79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  139 (256)
T 1geg_A           79 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACS  139 (256)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence            7999999998753211   12   233566777655444    444444332567888764

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=98.37  E-value=3.8e-07  Score=74.41  Aligned_cols=110  Identities=17%  Similarity=0.188  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------~   95 (209)
                      ++++|+||+|.+|.+++..|+++|.  +|++.++++..  ....++..     .+..+.    ..+++++++       .
T Consensus         7 k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (253)
T 1hxh_A            7 KVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGE-----RSMFVRHDVSSEADWTLVMAAVQRRLG   79 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCT-----TEEEECCCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcCC-----ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999998  99999997421  11222211     111110    011222233       3


Q ss_pred             CCCEEEEcCCCCCCC---CCC---hhHHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~----~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ..|++|++||.....   ..+   ....+..|+.    .++.+++.+++..  +++|++|..
T Consensus        80 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS~  139 (253)
T 1hxh_A           80 TLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMASV  139 (253)
T ss_dssp             SCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECCG
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcch
Confidence            579999999975321   122   2345667765    4445555555433  788888753

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=98.36  E-value=2.4e-06  Score=70.80  Aligned_cols=115  Identities=19%  Similarity=0.325  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-c---CCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-G---NDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-------~   95 (209)
                      ++|+||||+|++|..++..|++.|.  +|+++++++.  .....++.....  .+..+. +   .+++++++       .
T Consensus        45 k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~d~~~v~~~~~~~~~~~~  120 (285)
T 2c07_A           45 KVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTEHK  120 (285)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcCC--ceeEEECCCCCHHHHHHHHHHHHHhcC
Confidence            5899999999999999999999998  9999988642  112223332211  111111 1   11222332       4


Q ss_pred             CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      +.|+||++||.....   ..+   ..+.+..|+.....+.+.+.+.   ...+++|++|..
T Consensus       121 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~  181 (285)
T 2c07_A          121 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSI  181 (285)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCT
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCh
Confidence            789999999975321   112   2345677877755555444332   234678877643

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=98.36  E-value=1.3e-06  Score=71.87  Aligned_cols=111  Identities=18%  Similarity=0.221  Sum_probs=68.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhh-------cCCCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA-------LEDSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a-------~~~aD~Vi  101 (209)
                      ++++||||+|++|.+++..|++.|.  +|++.|++.......+....  ..++.   ..++.+++       +.+.|++|
T Consensus        29 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~--~~Dv~---d~~~v~~~~~~~~~~~g~iD~lv  101 (260)
T 3un1_A           29 KVVVITGASQGIGAGLVRAYRDRNY--RVVATSRSIKPSADPDIHTV--AGDIS---KPETADRIVREGIERFGRIDSLV  101 (260)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCCCCSSTTEEEE--ESCTT---SHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhhcccCceEEE--EccCC---CHHHHHHHHHHHHHHCCCCCEEE
Confidence            4799999999999999999999999  99999997421110000000  00000   01122222       34899999


Q ss_pred             EcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHh---hCCCeEEEEecC
Q 028437          102 IPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAK---YCPNAIVNMISN  146 (209)
Q Consensus       102 ~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~---~~p~~~viv~sn  146 (209)
                      ++||......   .+   ....+..|+.....+.+.+..   ....+.++++|.
T Consensus       102 ~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS  155 (260)
T 3un1_A          102 NNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITT  155 (260)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEec
Confidence            9999764221   12   234567788777766665532   234567777764

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=98.36  E-value=2.4e-06  Score=69.93  Aligned_cols=116  Identities=22%  Similarity=0.177  Sum_probs=71.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-cCC---chhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-GND---QLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~~---d~~~a-------~~   95 (209)
                      ++|+|+||+|.+|.+++..|++.|.  +|++.+++...  ....++.....  .+..+. +.+   +++++       +.
T Consensus        30 k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           30 QVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAAGG--EAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhCC--ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            5899999999999999999999998  99999997521  22223322211  111111 111   22222       34


Q ss_pred             CCCEEEEcCCCCCCCC----CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCC
Q 028437           96 DSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP~  148 (209)
                      ..|++|++||.....+    .+   ..+.+..|+.....+.+.+...   .+.+.+|++|...
T Consensus       106 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~  168 (262)
T 3rkr_A          106 RCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLA  168 (262)
T ss_dssp             CCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSC
T ss_pred             CCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechh
Confidence            6899999999732221    22   2345677877766666655432   3456788887544

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=98.36  E-value=2e-06  Score=70.54  Aligned_cols=116  Identities=17%  Similarity=0.173  Sum_probs=70.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-ecCCc--hhHHHhhcCCCCCcceeEee-c---CCchhhhc-----
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANT--PGVAADVGHINTRSEVAGYM-G---NDQLGQAL-----   94 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~-D~~~~--~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-----   94 (209)
                      +.++++||||+|.+|.+++..|++.|.  +|++. ++++.  .....++.....  .+..+. +   .++.++++     
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~--~vv~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~   78 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGY--NIVINYARSKKAALETAEEIEKLGV--KVLVVKANVGQPAKIKEMFQQIDE   78 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999999  98886 66532  122233333221  121111 1   11222333     


Q ss_pred             --CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           95 --EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        95 --~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                        ...|++|++||......   .+   ....+..|+.....+.+.+.++   ...++||++|.
T Consensus        79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS  141 (258)
T 3oid_A           79 TFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISS  141 (258)
T ss_dssp             HHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEE
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence              36699999998653221   22   2335677877766666665432   34567887764

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=98.36  E-value=1.1e-06  Score=71.82  Aligned_cols=115  Identities=10%  Similarity=-0.027  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCCCcceeEeecCCchhhh-------cCCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQA-------LEDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~a-------~~~aD~V  100 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.|+++... ...++.....  ++..+ ..++.+++       +...|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~--~~~~~-d~~~v~~~~~~~~~~~g~iD~l   76 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYP--QLKPM-SEQEPAELIEAVTSAYGQVDVL   76 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCT--TSEEC-CCCSHHHHHHHHHHHHSCCCEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcCC--cEEEE-CHHHHHHHHHHHHHHhCCCCEE
Confidence            4699999999999999999999999  999999975221 1111221111  11111 12233333       3478999


Q ss_pred             EEcCCCC-CCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCC
Q 028437          101 IIPAGVP-RKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (209)
Q Consensus       101 i~~ag~~-~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP~  148 (209)
                      |++||.. ....   .+   ....+..|+.....+.+.+.++   ...+++|++|...
T Consensus        77 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~  134 (254)
T 1zmt_A           77 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSAT  134 (254)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCST
T ss_pred             EECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence            9999975 2111   12   2345667776666655554322   2346788876543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=98.36  E-value=1.7e-06  Score=73.25  Aligned_cols=117  Identities=20%  Similarity=0.154  Sum_probs=70.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-------~   95 (209)
                      ++|+||||+|++|.+++..|++.|+  +|++.+++...  ....++........+..+. +   .+++++++       .
T Consensus         9 k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            9 RTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             CEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            4799999999999999999999999  99999997521  1122222111101121111 1   11223333       3


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---------CCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---------CPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---------~p~~~viv~snP  147 (209)
                      ..|++|++||......   .+   ..+.+..|+.....+.+.+.+.         ...+.||++|..
T Consensus        87 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~  153 (319)
T 3ioy_A           87 PVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASM  153 (319)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCG
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccc
Confidence            6699999999753211   12   3345677777666655554432         135678887643

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=98.36  E-value=1.6e-06  Score=71.46  Aligned_cols=113  Identities=18%  Similarity=0.143  Sum_probs=67.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhc-------CCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQAL-------EDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~-------~~aD~V  100 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++++++...  ..++...... .+. ++...++.++++       ...|++
T Consensus        17 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~--~~~~~~~~~~-~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   91 (266)
T 3p19_A           17 KLVVITGASSGIGEAIARRFSEEGH--PLLLLARRVER--LKALNLPNTL-CAQVDVTDKYTFDTAITRAEKIYGPADAI   91 (266)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHH--HHTTCCTTEE-EEECCTTCHHHHHHHHHHHHHHHCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHhhcCCce-EEEecCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            4799999999999999999999998  99999997421  1112111100 000 000011222333       378999


Q ss_pred             EEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCC
Q 028437          101 IIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNP  147 (209)
Q Consensus       101 i~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~----i~~~~p~~~viv~snP  147 (209)
                      |++||......   .+   ....+..|+.....+.+.    +++. ..+.||++|..
T Consensus        92 vnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~IV~isS~  147 (266)
T 3p19_A           92 VNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKAR-NCGTIINISSI  147 (266)
T ss_dssp             EECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCG
T ss_pred             EECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcCh
Confidence            99999754221   22   234567787766665544    4443 34677777643

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=98.36  E-value=2.4e-06  Score=69.87  Aligned_cols=114  Identities=20%  Similarity=0.193  Sum_probs=71.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-c---CCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-G---NDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-------~   95 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.|++..  .....++.....  ++..+. +   .++.++.+       .
T Consensus        13 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g   88 (256)
T 3gaf_A           13 AVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQAGG--KAIGLECNVTDEQHREAVIKAALDQFG   88 (256)
T ss_dssp             CEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999999  9999999752  122223322211  111111 1   11222223       3


Q ss_pred             CCCEEEEcCCCCCCC--CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKP--GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~--g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ..|++|++||.....  ..+   ....+..|+.....+.+.+.++   ...+.+|++|.
T Consensus        89 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS  147 (256)
T 3gaf_A           89 KITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISS  147 (256)
T ss_dssp             CCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            789999999975422  222   2345677877777766665432   34578888865

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=98.36  E-value=4.3e-06  Score=69.07  Aligned_cols=116  Identities=16%  Similarity=0.227  Sum_probs=74.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEee-c---CCchhhhcC-----
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-G---NDQLGQALE-----   95 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~~-----   95 (209)
                      .++++||||+|.+|.+++..|++.|.  +|++.+++..   .....++.....  ++..+. +   .++.+++++     
T Consensus        31 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           31 GKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAGG--RAVAIRADNRDAEAIEQAIRETVEA  106 (271)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999999  9999977542   112223322211  111111 1   112233333     


Q ss_pred             --CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437           96 --DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus        96 --~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                        ..|++|++||......   .+   ....+..|+.....+.+.+.+.- ..+.+|++|..
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~  167 (271)
T 3v2g_A          107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN  167 (271)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence              7899999999754221   12   33457788888888888877664 35678877653

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=98.36  E-value=9.7e-07  Score=71.92  Aligned_cols=113  Identities=18%  Similarity=0.257  Sum_probs=69.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCC--CcceeEeecCCchhhhc-------CCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINT--RSEVAGYMGNDQLGQAL-------EDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~--~~~v~~~~~~~d~~~a~-------~~a   97 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.|+++..  ....++.....  ..++.   ..++.++++       ...
T Consensus        10 k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~~g~i   84 (248)
T 3op4_A           10 KVALVTGASRGIGKAIAELLAERGA--KVIGTATSESGAQAISDYLGDNGKGMALNVT---NPESIEAVLKAITDEFGGV   84 (248)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGEEEEECCTT---CHHHHHHHHHHHHHHHCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcccceEEEEeCC---CHHHHHHHHHHHHHHcCCC
Confidence            5799999999999999999999999  99999997521  11222222110  00111   111223333       378


Q ss_pred             CEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           98 DVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        98 D~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      |++|++||......   .+   ....+..|+.....+.+.+.++   ...+.+|++|.
T Consensus        85 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS  142 (248)
T 3op4_A           85 DILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGS  142 (248)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            99999999764221   12   2345677877766666655432   24567888764

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=98.35  E-value=1.1e-06  Score=72.82  Aligned_cols=113  Identities=16%  Similarity=0.171  Sum_probs=67.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhcC-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQALE-------   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~-------   95 (209)
                      ++++||||+|.+|..++..|++.|.  +|+++++++..  ....++...   ..+..+.    ..++++++++       
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            5899999999999999999999998  99999997421  122233221   1111111    1112333333       


Q ss_pred             CCCEEEEcCCCCCC--C--CCC---hhHHHHHHHHHHH----HHHHHHHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRK--P--GMT---RDDLFNINAGIVK----DLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~--~--g~~---r~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~sn  146 (209)
                      ..|++|++||....  +  ..+   ....+..|+....    .+++.+.+......+|++|.
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS  158 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGS  158 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            45999999997532  1  112   2335667776644    45555555443327777764

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=98.35  E-value=2.7e-06  Score=70.25  Aligned_cols=116  Identities=18%  Similarity=0.210  Sum_probs=70.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeE--eecCCchhhh-------cCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAG--YMGNDQLGQA-------LEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~--~~~~~d~~~a-------~~~a   97 (209)
                      +.++||||+|.+|.+++..|++.|.  +|++.++++..  ....++...........  +...++.+++       +...
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (270)
T 3ftp_A           29 QVAIVTGASRGIGRAIALELARRGA--MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGAL  106 (270)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            5799999999999999999999999  99999997521  11222222111100000  1011122223       3478


Q ss_pred             CEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           98 DVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        98 D~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      |++|++||.....   ..+   ....+..|+.....+.+.+.+.   ...+.||++|.
T Consensus       107 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS  164 (270)
T 3ftp_A          107 NVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITS  164 (270)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECc
Confidence            9999999975422   122   2345677887777666665432   24577888764

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=98.35  E-value=2.7e-06  Score=70.43  Aligned_cols=114  Identities=18%  Similarity=0.180  Sum_probs=73.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch---hHHHhhcCCCCCcceeEee-cC---Cchhh-------hc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYM-GN---DQLGQ-------AL   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~---~~~~dl~~~~~~~~v~~~~-~~---~d~~~-------a~   94 (209)
                      ++++|+||+|.+|.+++..|++.|.  +|++.+++...   ....++.....  ++..+. +-   ++.++       .+
T Consensus        30 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~  105 (283)
T 1g0o_A           30 KVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVKIF  105 (283)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhCC--CeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999999  99999987521   11222322111  111111 01   11222       23


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      ...|++|++||......   .+   ....+..|+.....+.+.+.++- ..+++|++|.
T Consensus       106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            47899999999753211   12   33457889999888888887763 4567777764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.34  E-value=6.6e-06  Score=63.71  Aligned_cols=139  Identities=12%  Similarity=0.077  Sum_probs=81.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEecCCchhHHHhhcCCCCCcceeE-eecCCchhhh--cCCCCEEEEc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQA--LEDSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~-g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a--~~~aD~Vi~~  103 (209)
                      .++|+|+|+ |.+|..++..|... |+  +|+++|+++..  ...+...... .+.. ....+.++++  ++++|+||.+
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~--~V~vid~~~~~--~~~~~~~g~~-~~~gd~~~~~~l~~~~~~~~ad~vi~~  112 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGK--ISLGIEIREEA--AQQHRSEGRN-VISGDATDPDFWERILDTGHVKLVLLA  112 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCS--CEEEEESCHHH--HHHHHHTTCC-EEECCTTCHHHHHTBCSCCCCCEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCC--eEEEEECCHHH--HHHHHHCCCC-EEEcCCCCHHHHHhccCCCCCCEEEEe
Confidence            358999998 99999999999998 98  99999998532  2222222111 0110 0001124454  7899999998


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEehhhHHHHHH
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT  183 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~~lds~r~~~  183 (209)
                      .+..           ..|    ..++..+++.+|+..++..++-..     ..+.+.+.+   .+.++.-...-..++..
T Consensus       113 ~~~~-----------~~~----~~~~~~~~~~~~~~~ii~~~~~~~-----~~~~l~~~G---~~~vi~p~~~~a~~l~~  169 (183)
T 3c85_A          113 MPHH-----------QGN----QTALEQLQRRNYKGQIAAIAEYPD-----QLEGLLESG---VDAAFNIYSEAGSGFAR  169 (183)
T ss_dssp             CSSH-----------HHH----HHHHHHHHHTTCCSEEEEEESSHH-----HHHHHHHHT---CSEEEEHHHHHHHHHHH
T ss_pred             CCCh-----------HHH----HHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHcC---CCEEEchHHHHHHHHHH
Confidence            5321           223    334456666677777666655322     123444443   45565544433444555


Q ss_pred             HHHHHcCCCCCC
Q 028437          184 FYAGKANVNVAG  195 (209)
Q Consensus       184 ~la~~l~v~~~~  195 (209)
                      .+.+.++.+...
T Consensus       170 ~~~~~~~~~~~~  181 (183)
T 3c85_A          170 HVCKQLEPQFTS  181 (183)
T ss_dssp             HHHHHHCCCCCC
T ss_pred             HHHHhcCCcccc
Confidence            666667765544

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=98.34  E-value=2.6e-06  Score=70.16  Aligned_cols=118  Identities=14%  Similarity=0.165  Sum_probs=75.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEee-cC---Cchhhhc-----
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GN---DQLGQAL-----   94 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~---~d~~~a~-----   94 (209)
                      ..++++||||+|.+|.+++..|++.|.  +|++.+++..   .....++.....  ++..+. +-   ++.++++     
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~   92 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKALGS--DAIAIKADIRQVPEIVKLFDQAVA   92 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999999  9999887532   112223322211  111111 11   1222233     


Q ss_pred             --CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 028437           95 --EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (209)
Q Consensus        95 --~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~  148 (209)
                        ...|++|++||......   .+   ....+..|+.....+.+.+.++- ..+.+|++|...
T Consensus        93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence              37899999999764221   12   33457889888888888877765 356777776543

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=98.34  E-value=9.2e-07  Score=72.54  Aligned_cols=116  Identities=14%  Similarity=0.130  Sum_probs=72.7

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCC-CCCccee-EeecCCchhhhc-------CC
Q 028437           29 RKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHI-NTRSEVA-GYMGNDQLGQAL-------ED   96 (209)
Q Consensus        29 ~kI~IiGas--G~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~-~~~~~v~-~~~~~~d~~~a~-------~~   96 (209)
                      ++++||||+  |++|.+++..|++.|.  +|++.++++. .....++... .....+. ++...+++++++       ..
T Consensus        10 k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   87 (265)
T 1qsg_A           10 KRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK   87 (265)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            479999998  9999999999999998  9999999751 1122222211 0000010 010111222333       26


Q ss_pred             CCEEEEcCCCCCC-----C--C-CC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           97 SDVVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~-----~--g-~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      .|++|++||....     +  . .+   ....+..|+.....+.+.+.++- +.+++|++|.
T Consensus        88 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  149 (265)
T 1qsg_A           88 FDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY  149 (265)
T ss_dssp             EEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            7999999997542     1  1 22   23467889999999998887653 2467887764

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=98.34  E-value=3.9e-06  Score=69.59  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=66.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEe----ecCCchhhhcC------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGY----MGNDQLGQALE------   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~----~~~~d~~~a~~------   95 (209)
                      +.++||||+|.+|.+++..|++.|.  +|+++|++..   .....++.....  .+..+    ...++.+++++      
T Consensus        30 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           30 PVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGLGA--RVIFLRADLADLSSHQATVDAVVAEF  105 (280)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHTTC--CEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999  9999996431   112223322211  11111    11123333333      


Q ss_pred             -CCCEEEEcCCCCC---CC--CCCh---hHHHHHHHHHHHHHHH----HHHhhCC--CeEEEEecCCC
Q 028437           96 -DSDVVIIPAGVPR---KP--GMTR---DDLFNINAGIVKDLCS----AIAKYCP--NAIVNMISNPV  148 (209)
Q Consensus        96 -~aD~Vi~~ag~~~---~~--g~~r---~~~~~~N~~~~~~i~~----~i~~~~p--~~~viv~snP~  148 (209)
                       ..|++|++||...   .+  ..+.   ...+..|+.....+.+    .+.+...  .+.||++|...
T Consensus       106 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~  173 (280)
T 4da9_A          106 GRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVS  173 (280)
T ss_dssp             SCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-
T ss_pred             CCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchh
Confidence             7899999999731   11  1122   2345567666554444    4444332  56788887543

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=98.34  E-value=3.4e-06  Score=69.54  Aligned_cols=115  Identities=21%  Similarity=0.288  Sum_probs=70.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc----------hh----HHHhhcCCCCCcceeEee-c---CCch
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----------PG----VAADVGHINTRSEVAGYM-G---NDQL   90 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~----------~~----~~~dl~~~~~~~~v~~~~-~---~~d~   90 (209)
                      ++++||||+|.+|.+++..|++.|.  +|+++|++..          ..    ...++....  .++..+. +   .++.
T Consensus        14 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v   89 (278)
T 3sx2_A           14 KVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRESL   89 (278)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHH
Confidence            4899999999999999999999999  9999998620          11    111121111  1111111 1   1123


Q ss_pred             hhhc-------CCCCEEEEcCCCCCCCC--CChhHHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCC
Q 028437           91 GQAL-------EDSDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNP  147 (209)
Q Consensus        91 ~~a~-------~~aD~Vi~~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~----i~~~~p~~~viv~snP  147 (209)
                      ++++       ...|++|++||......  .+....+..|+.....+.+.    +.+....++||++|..
T Consensus        90 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  159 (278)
T 3sx2_A           90 SAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSS  159 (278)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccH
Confidence            3333       37899999999764222  12334567787766666655    4444446788888753

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.34  E-value=4e-06  Score=66.86  Aligned_cols=77  Identities=21%  Similarity=0.343  Sum_probs=53.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      .+|||+|+|+ |.+|..++..|.+.|+  +|.++|+++.                           ++++||+||++.. 
T Consensus        18 ~~~~I~iiG~-G~mG~~la~~l~~~g~--~V~~~~~~~~---------------------------~~~~aD~vi~av~-   66 (209)
T 2raf_A           18 QGMEITIFGK-GNMGQAIGHNFEIAGH--EVTYYGSKDQ---------------------------ATTLGEIVIMAVP-   66 (209)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCC---------------------------CSSCCSEEEECSC-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCHH---------------------------HhccCCEEEEcCC-
Confidence            4579999998 9999999999999998  9999988642                           3457899999853 


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      +               ..++++++.+.+..++..++.++|+.+
T Consensus        67 ~---------------~~~~~v~~~l~~~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           67 Y---------------PALAALAKQYATQLKGKIVVDITNPLN   94 (209)
T ss_dssp             H---------------HHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred             c---------------HHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence            1               112333444433323667777888544

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=98.33  E-value=1.2e-06  Score=71.67  Aligned_cols=115  Identities=16%  Similarity=0.154  Sum_probs=69.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-h--HHHhhcCC-CCCcceeEee-c---CCchhhhc------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-G--VAADVGHI-NTRSEVAGYM-G---NDQLGQAL------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~--~~~dl~~~-~~~~~v~~~~-~---~~d~~~a~------   94 (209)
                      ++++||||+|++|.+++..|++.|.  +|++.++++.. .  ...++... .  ..+..+. +   .+++++++      
T Consensus         5 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            5 KVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQHG--VKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHHT--SCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHhccC--CcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            5899999999999999999999998  99999997532 1  11222110 1  0111110 0   11222333      


Q ss_pred             -CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        95 -~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                       ...|++|++||......   .+   ....+..|+.....+.+.+.++   ...+++|++|..
T Consensus        81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~  143 (260)
T 1x1t_A           81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASA  143 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcH
Confidence             37899999999754211   12   2345677777555555544332   234678888643

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=98.33  E-value=3.6e-06  Score=69.23  Aligned_cols=116  Identities=18%  Similarity=0.210  Sum_probs=70.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEe----ecCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGY----MGNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~----~~~~d~~~a-------~~   95 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.++++.  .....++.... ..++..+    ...++.+++       +.
T Consensus        21 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           21 KRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999999  9999999752  11222232200 0011111    112223333       34


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~----i~~~~p~~~viv~snP  147 (209)
                      ..|++|++||......   .+   ....+..|+.....+.+.    +.+....+.+|++|..
T Consensus        98 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  159 (266)
T 4egf_A           98 GLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASA  159 (266)
T ss_dssp             SCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcch
Confidence            7899999999764221   12   233566777665555544    4444446788888643

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=98.33  E-value=8.4e-07  Score=72.19  Aligned_cols=115  Identities=21%  Similarity=0.247  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a-------~~   95 (209)
                      ++|+|+||+|++|.+++..|++.|.  +|++++++...  ....++.... ...+..+. +   .++++++       +.
T Consensus        15 k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   91 (265)
T 1h5q_A           15 KTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADLG   91 (265)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            5899999999999999999999998  99999995421  1122221100 00111111 1   1122222       23


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh----CCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~----~p~~~viv~sn  146 (209)
                      ..|++|++||......   .+   ....+..|+.....+.+.+.+.    ...+++|++|.
T Consensus        92 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  152 (265)
T 1h5q_A           92 PISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  152 (265)
T ss_dssp             SEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence            5899999999754221   12   2334677877777666665443    33477887764

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=98.33  E-value=1.5e-06  Score=70.90  Aligned_cols=113  Identities=16%  Similarity=0.284  Sum_probs=68.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhc-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQAL-------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------   94 (209)
                      .++++||||+|.+|.+++..|+++|.  +|+++|+++..  ....++...     +..+.    ..++.++++       
T Consensus         9 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~D~~~~~~~~~~~~~~~~~~   81 (261)
T 3n74_A            9 GKVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDKAGAERVAGEIGDA-----ALAVAADISKEADVDAAVEAALSKF   81 (261)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCTT-----EEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCCc-----eEEEEecCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999998  99999997521  112222211     11111    111223333       


Q ss_pred             CCCCEEEEcCCCCCCCC----CCh---hHHHHHHHHHHHHH----HHHHHhhC---CCeEEEEecCC
Q 028437           95 EDSDVVIIPAGVPRKPG----MTR---DDLFNINAGIVKDL----CSAIAKYC---PNAIVNMISNP  147 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g----~~r---~~~~~~N~~~~~~i----~~~i~~~~---p~~~viv~snP  147 (209)
                      ...|++|++||....++    .+.   ...+..|+.....+    .+.+.+..   ..+.++++|..
T Consensus        82 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~  148 (261)
T 3n74_A           82 GKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVAST  148 (261)
T ss_dssp             SCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCT
T ss_pred             CCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCch
Confidence            37899999999754222    122   23456676654444    44444432   25677777654

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=98.33  E-value=1.5e-05  Score=66.76  Aligned_cols=115  Identities=23%  Similarity=0.269  Sum_probs=71.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cCCc---hh-------hhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LG-------QALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~-------~a~~   95 (209)
                      ++++||||+|++|.+++..|++.|.  +|++.|+++.  .....++..... ..+..+. +-+|   .+       +.+.
T Consensus        42 k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  118 (293)
T 3rih_A           42 RSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGELGA-GNVIGVRLDVSDPGSCADAARTVVDAFG  118 (293)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTTSSS-SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCC-CcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999999999  9999999753  222334443221 1122111 1112   22       2234


Q ss_pred             CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~snP  147 (209)
                      ..|++|++||.....   ..+   ....+..|+.....+.+.+    ++. ..+++|++|.-
T Consensus       119 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iV~isS~  179 (293)
T 3rih_A          119 ALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTAS-GRGRVILTSSI  179 (293)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH-SSCEEEEECCS
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEeCh
Confidence            789999999975321   122   2345677887777666665    343 34567777643

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.33  E-value=2e-06  Score=70.78  Aligned_cols=114  Identities=15%  Similarity=0.132  Sum_probs=73.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEee-c---CCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYM-G---NDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-------~   95 (209)
                      ++++||||+|.+|.+++..|++.|.  +|+++++++...  ...++..     .+..+. +   .+++++++       .
T Consensus         7 k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (263)
T 2a4k_A            7 KTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALEA-----EAIAVVADVSDPKAVEAVFAEALEEFG   79 (263)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCCS-----SEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC-----ceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999999  999999975211  1122211     111111 1   11222333       3


Q ss_pred             CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 028437           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~  149 (209)
                      ..|++|++||.....   ..+   ....+..|+.....+.+.+.++. ..+++|++|....
T Consensus        80 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  140 (263)
T 2a4k_A           80 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG  140 (263)
T ss_dssp             CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchh
Confidence            579999999875321   112   23457789988888888877654 2467888876544

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=98.33  E-value=3.9e-06  Score=69.25  Aligned_cols=116  Identities=23%  Similarity=0.273  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEee-c---CCchhhhc-----
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-G---NDQLGQAL-----   94 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-----   94 (209)
                      ..+.++||||+|.+|.+++..|++.|.  +|++.++...   .....++.....  .+..+. +   .++.++++     
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~d~~~v~~~~~~~~~  102 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA--KVAVNYASSAGAADEVVAAIAAAGG--EAFAVKADVSQESEVEALFAAVIE  102 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHH
Confidence            345799999999999999999999999  9999988431   112222322111  111111 1   11222333     


Q ss_pred             --CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           95 --EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        95 --~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                        ...|++|++||......   .+   ....+..|+.....+.+.+.+.   ...++||++|.
T Consensus       103 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS  165 (269)
T 4dmm_A          103 RWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIAS  165 (269)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECc
Confidence              37899999999764221   12   2345677877666666554332   23567777764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=98.33  E-value=3.4e-06  Score=70.34  Aligned_cols=114  Identities=11%  Similarity=0.123  Sum_probs=74.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--h-HHHhhcCCCCCcceeEee-cCC---chhhh-------c
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--G-VAADVGHINTRSEVAGYM-GND---QLGQA-------L   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~-~~~dl~~~~~~~~v~~~~-~~~---d~~~a-------~   94 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.+++...  . ....+.....  ++..+. +-+   +.+++       +
T Consensus        48 k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~  123 (291)
T 3ijr_A           48 KNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKEGV--KCVLLPGDLSDEQHCKDIVQETVRQL  123 (291)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTTC--CEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999999  99999997521  1 1112222211  121111 111   22222       3


Q ss_pred             CCCCEEEEcCCCCCCCC----CC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      ...|++|++||.....+    .+   ....+..|+.....+.+.+.++- ..+.+|++|.
T Consensus       124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS  183 (291)
T 3ijr_A          124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS  183 (291)
T ss_dssp             SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence            37899999998753221    12   34567889999999998887764 3457777764

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.33  E-value=5.2e-06  Score=61.50  Aligned_cols=70  Identities=14%  Similarity=0.129  Sum_probs=46.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCc---hhhh-cCCCCEEEEc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQA-LEDSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a-~~~aD~Vi~~  103 (209)
                      +++|+|+|+ |.+|+.++..|.+.|+  +|+++|+++..  ...+.+.... .+..  +.++   ++++ ++++|+||.+
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~--~V~~id~~~~~--~~~~~~~~~~-~~~g--d~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGK--KVLAVDKSKEK--IELLEDEGFD-AVIA--DPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTTCE-EEEC--CTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCCCc-EEEC--CCCCHHHHHhCCcccCCEEEEe
Confidence            468999999 9999999999999999  99999997532  2222222111 0111  1112   2222 5689999998


Q ss_pred             CC
Q 028437          104 AG  105 (209)
Q Consensus       104 ag  105 (209)
                      .+
T Consensus        78 ~~   79 (141)
T 3llv_A           78 GS   79 (141)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=98.32  E-value=3.9e-06  Score=68.17  Aligned_cols=112  Identities=16%  Similarity=0.216  Sum_probs=69.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC-chhHHHhhcCCCCCcceeEee-cC---Cchhhh-------cCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM-GN---DQLGQA-------LED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~---~d~~~a-------~~~   96 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.++++ ..... .+....  .++..+. +-   ++++++       +.+
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~-~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (249)
T 2ew8_A            8 KLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEA-AIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFGR   82 (249)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHH-HHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCchhHHHH-HHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            4799999999999999999999998  999999975 32211 222111  1111111 11   122222       357


Q ss_pred             CCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHH----HHhhCCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~----i~~~~p~~~viv~sn  146 (209)
                      .|++|++||......   .+   ....+..|+.....+.+.    +++. ..+++|++|.
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS  141 (249)
T 2ew8_A           83 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN-GWGRIINLTS  141 (249)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcc
Confidence            899999999753211   22   234567787775555544    5544 3567887764

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.32  E-value=4e-06  Score=61.61  Aligned_cols=99  Identities=14%  Similarity=0.150  Sum_probs=58.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeE-eecCCchhhh-cCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQA-LEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a-~~~aD~Vi~~ag  105 (209)
                      +++|+|+|+ |.+|..++..|...|+  +|+++|+++.  ....+...... .+.. ....+.++++ ++++|+||++++
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~--~v~~~d~~~~--~~~~~~~~~~~-~~~~d~~~~~~l~~~~~~~~d~vi~~~~   79 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEE--KVNAYASYATH-AVIANATEENELLSLGIRNFEYVIVAIG   79 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHH--HHHTTTTTCSE-EEECCTTCHHHHHTTTGGGCSEEEECCC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhCCE-EEEeCCCCHHHHHhcCCCCCCEEEECCC
Confidence            347999999 9999999999999998  8999999742  12222222111 1110 0001123333 678999999975


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEe-cCC
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNP  147 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~-snP  147 (209)
                      .+          ...|.    .++..+++.+++ +++.. +++
T Consensus        80 ~~----------~~~~~----~~~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           80 AN----------IQAST----LTTLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             SC----------HHHHH----HHHHHHHHTTCS-EEEEECCSH
T ss_pred             Cc----------hHHHH----HHHHHHHHcCCC-eEEEEeCCH
Confidence            42          12333    244555666776 45444 444

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.32  E-value=4.7e-06  Score=69.27  Aligned_cols=91  Identities=21%  Similarity=0.327  Sum_probs=60.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      +|||+|+|++|.+|..++..|...|+  +|+++|+++..  ...+.....    ..   + +..++++++|+||++... 
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~--~~~~~~~g~----~~---~-~~~~~~~~aDvVi~av~~-   77 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEG--RDRLQGMGI----PL---T-DGDGWIDEADVVVLALPD-   77 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHH--HHHHHHTTC----CC---C-CSSGGGGTCSEEEECSCH-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhcCC----Cc---C-CHHHHhcCCCEEEEcCCc-
Confidence            36999999999999999999999998  99999997422  112222111    11   1 345778999999998521 


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                                     ..+.++++.+.... ++..++..|+
T Consensus        78 ---------------~~~~~v~~~l~~~l~~~~ivv~~s~  102 (286)
T 3c24_A           78 ---------------NIIEKVAEDIVPRVRPGTIVLILDA  102 (286)
T ss_dssp             ---------------HHHHHHHHHHGGGSCTTCEEEESCS
T ss_pred             ---------------hHHHHHHHHHHHhCCCCCEEEECCC
Confidence                           11355566666554 4555554444

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=98.32  E-value=4.8e-06  Score=69.65  Aligned_cols=115  Identities=16%  Similarity=0.175  Sum_probs=69.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--------------hhHHHhhcCCCCCcceeEee-cC---Cch
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--------------PGVAADVGHINTRSEVAGYM-GN---DQL   90 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--------------~~~~~dl~~~~~~~~v~~~~-~~---~d~   90 (209)
                      +.++||||+|.+|.+++..|++.|.  +|+++|+++.              .....++.....  ++..+. +.   ++.
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v  104 (299)
T 3t7c_A           29 KVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR--RIIASQVDVRDFDAM  104 (299)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHH
Confidence            5799999999999999999999999  9999998621              111122222111  111111 11   122


Q ss_pred             hhh-------cCCCCEEEEcCCCCCCCC----CC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCC
Q 028437           91 GQA-------LEDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (209)
Q Consensus        91 ~~a-------~~~aD~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~snP  147 (209)
                      +++       +...|++|++||......    .+   ....+..|+.....+.+.+    .+....+.||++|..
T Consensus       105 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~  179 (299)
T 3t7c_A          105 QAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSI  179 (299)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCG
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECCh
Confidence            222       347899999999754221    22   2345677876666665554    333446788888753

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=98.31  E-value=1.2e-06  Score=72.84  Aligned_cols=113  Identities=17%  Similarity=0.103  Sum_probs=74.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee-c---CCchhhhcC---CCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQLGQALE---DSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~~---~aD~Vi  101 (209)
                      ++++||||+|++|.+++..|++.|.  +|++.++++....  ++.... ...+..+. +   .++.+++++   ..|++|
T Consensus        17 k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv   91 (291)
T 3rd5_A           17 RTVVITGANSGLGAVTARELARRGA--TVIMAVRDTRKGE--AAARTM-AGQVEVRELDLQDLSSVRRFADGVSGADVLI   91 (291)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHTTS-SSEEEEEECCTTCHHHHHHHHHTCCCEEEEE
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHHh-cCCeeEEEcCCCCHHHHHHHHHhcCCCCEEE
Confidence            5899999999999999999999998  9999999753211  111110 11222211 1   112334444   569999


Q ss_pred             EcCCCCCCC----CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          102 IPAGVPRKP----GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       102 ~~ag~~~~~----g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ++||.....    ..+....+..|+.....+.+.+.+.... ++|++|..
T Consensus        92 ~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS~  140 (291)
T 3rd5_A           92 NNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSSM  140 (291)
T ss_dssp             ECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECCG
T ss_pred             ECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeech
Confidence            999975322    1234467899999999999998876433 67777653

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=98.31  E-value=4.6e-06  Score=68.21  Aligned_cols=117  Identities=11%  Similarity=0.051  Sum_probs=73.8

Q ss_pred             CeEEEEcCCCc--hHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeE----eecCCchhhhc-------
Q 028437           29 RKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAG----YMGNDQLGQAL-------   94 (209)
Q Consensus        29 ~kI~IiGasG~--vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~----~~~~~d~~~a~-------   94 (209)
                      ++++||||+|+  +|.+++..|++.|.  +|++.+++... ....++........+..    +...++.++++       
T Consensus         8 k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (266)
T 3oig_A            8 RNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV   85 (266)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            58999999988  99999999999999  99999987421 12222221110001111    11112233333       


Q ss_pred             CCCCEEEEcCCCCCC-----C--CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437           95 EDSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~-----~--g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                      ...|++|++||....     +  ..+   ....+..|+.....+.+.+...- +.+.+|++|..
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~  149 (266)
T 3oig_A           86 GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYL  149 (266)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred             CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence            378999999997541     1  122   23456788888888888887765 35788888743

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.31  E-value=1.5e-06  Score=68.87  Aligned_cols=99  Identities=21%  Similarity=0.262  Sum_probs=60.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH--HHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~--~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      |||+|+||+|.+|+.++..|.+.|+  +|+++|+++....  ..++........+..    ++++++++++|+||+++..
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~Vi~~~~~   74 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIAGDASITG----MKNEDAAEACDIAVLTIPW   74 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHHSSCCEEE----EEHHHHHHHCSEEEECSCH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccccccCCCCh----hhHHHHHhcCCEEEEeCCh
Confidence            5899999559999999999999998  9999999742211  111110000011221    2567788999999999631


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                               +.       .+++++.+.+..++..++.++|+..
T Consensus        75 ---------~~-------~~~~~~~l~~~~~~~~vi~~~~g~~  101 (212)
T 1jay_A           75 ---------EH-------AIDTARDLKNILREKIVVSPLVPVS  101 (212)
T ss_dssp             ---------HH-------HHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred             ---------hh-------HHHHHHHHHHHcCCCEEEEcCCCcC
Confidence                     11       1233333332224667777888644

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=98.31  E-value=1.5e-06  Score=71.75  Aligned_cols=113  Identities=20%  Similarity=0.232  Sum_probs=68.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCC-CCcceeEeecCCchhhhc-------CCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHIN-TRSEVAGYMGNDQLGQAL-------EDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~-~~~~v~~~~~~~d~~~a~-------~~aD   98 (209)
                      ++++|+||+|.+|.+++..|++.|+  +|+++|+++...  ...++.... ...++.   ..+++++++       ...|
T Consensus        10 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~---d~~~v~~~~~~~~~~~g~iD   84 (270)
T 1yde_A           10 KVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPGAVFILCDVT---QEDDVKTLVSETIRRFGRLD   84 (270)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTEEEEECCTT---SHHHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCCeEEEcCCC---CHHHHHHHHHHHHHHcCCCC
Confidence            5799999999999999999999998  999999975221  112221110 000110   011222333       3789


Q ss_pred             EEEEcCCCCCCCC----CC---hhHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecC
Q 028437           99 VVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (209)
Q Consensus        99 ~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~sn  146 (209)
                      ++|++||.....+    .+   ....+..|+.....+.+.+.++-  ..+.+|++|.
T Consensus        85 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS  141 (270)
T 1yde_A           85 CVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISS  141 (270)
T ss_dssp             EEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             EEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence            9999999753211    12   23456778777777666654321  1467777764

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=98.31  E-value=3.8e-06  Score=68.23  Aligned_cols=114  Identities=15%  Similarity=0.135  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-cCC---chhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-GND---QLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~~---d~~~a-------~~   95 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.++++..  ....++.....  .+..+. +-+   +++++       +.
T Consensus         8 k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~g   83 (247)
T 2jah_A            8 KVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAAGA--KVHVLELDVADRQGVDAAVASTVEALG   83 (247)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999999  99999997421  12223322111  111111 111   22222       34


Q ss_pred             CCCEEEEcCCCCCCC---CCCh---hHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~---g~~r---~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~sn  146 (209)
                      +.|++|++||.....   ..+.   ...+..|+.....+.+.+.++-  ..+.+|++|.
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS  142 (247)
T 2jah_A           84 GLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSS  142 (247)
T ss_dssp             CCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcc
Confidence            799999999975321   1222   3456778776666665554321  1167888764

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=98.31  E-value=1.3e-06  Score=73.33  Aligned_cols=68  Identities=18%  Similarity=0.100  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ++|||+|+|+ |.+|..++..|++.|+  +|+++|+++..  ...+......    ..  .+++++++++||+||++..
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~~----~~--~~~~~e~~~~aDvvi~~vp   73 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLRAGL--STWGADLNPQA--CANLLAEGAC----GA--AASAREFAGVVDALVILVV   73 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTTCS----EE--ESSSTTTTTTCSEEEECCS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHcCCc----cc--cCCHHHHHhcCCEEEEECC
Confidence            4579999999 9999999999999999  99999997532  2223222211    10  1356788999999999963

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=98.31  E-value=5.7e-06  Score=67.84  Aligned_cols=116  Identities=16%  Similarity=0.153  Sum_probs=69.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec-CCc--hhHHHhhcCCCCCcceeEee-c---CCchhhhc-----
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANT--PGVAADVGHINTRSEVAGYM-G---NDQLGQAL-----   94 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~-~~~--~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-----   94 (209)
                      ..++|+||||+|.+|.+++..|++.|.  +|++.+. +..  .....++.....  .+..+. +   .++.++++     
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~  100 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRDAAGAQETLNAIVANGG--NGRLLSFDVANREQCREVLEHEIA  100 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHH
Confidence            335899999999999999999999998  8877654 321  112222322211  111111 1   11223333     


Q ss_pred             --CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecC
Q 028437           95 --EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (209)
Q Consensus        95 --~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~sn  146 (209)
                        ...|++|++||......   .+   ....+..|+.....+.+.+    .+....+++|++|.
T Consensus       101 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  164 (267)
T 4iiu_A          101 QHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSS  164 (267)
T ss_dssp             HHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence              37899999999764221   12   3345677877666666554    23355678888874

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=98.31  E-value=3.5e-06  Score=68.80  Aligned_cols=114  Identities=15%  Similarity=0.168  Sum_probs=69.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--h--HHHhhcCCCCCcceeEee-cC---Cchhhhc------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--G--VAADVGHINTRSEVAGYM-GN---DQLGQAL------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~--~~~dl~~~~~~~~v~~~~-~~---~d~~~a~------   94 (209)
                      ++++|+||+|.+|.+++..|++.|.  +|++.++++..  .  ...++.....  ++..+. +-   +++++++      
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGF--DIAVADLPQQEEQAAETIKLIEAADQ--KAVFVGLDVTDKANFDSAIDEAAEK   78 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEECGGGHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4799999999999999999999998  99999986532  1  1223322211  121111 11   1223333      


Q ss_pred             -CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHh----hCCCeEEEEecC
Q 028437           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAK----YCPNAIVNMISN  146 (209)
Q Consensus        95 -~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~----~~p~~~viv~sn  146 (209)
                       ...|++|++||......   .+   ....+..|+.....+.+.+.+    ....+.+|++|.
T Consensus        79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  141 (258)
T 3a28_C           79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAAS  141 (258)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECc
Confidence             37899999999753211   12   234567777666555555443    333267777764

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=98.31  E-value=1.1e-05  Score=66.90  Aligned_cols=116  Identities=17%  Similarity=0.188  Sum_probs=69.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeE--eecCCchhhhcC-------CC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAG--YMGNDQLGQALE-------DS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~-------~a   97 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.++++.  .....++...........  +...++.+++++       ..
T Consensus        33 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  110 (276)
T 3r1i_A           33 KRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGI  110 (276)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            5899999999999999999999999  9999999752  222233332211111000  101112333333       78


Q ss_pred             CEEEEcCCCCCCCC---CCh---hHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecC
Q 028437           98 DVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (209)
Q Consensus        98 D~Vi~~ag~~~~~g---~~r---~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~sn  146 (209)
                      |++|++||......   .+.   ...+..|+.....+.+.+    .+....+.++++|.
T Consensus       111 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS  169 (276)
T 3r1i_A          111 DIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTAS  169 (276)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECc
Confidence            99999999764221   122   234567776655555544    44333477777764

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.31  E-value=3.3e-07  Score=85.99  Aligned_cols=101  Identities=17%  Similarity=0.156  Sum_probs=67.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHH---------HhhcCCCC-C--------cceeEeecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA---------ADVGHINT-R--------SEVAGYMGND   88 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~---------~dl~~~~~-~--------~~v~~~~~~~   88 (209)
                      +.+||+|+|+ |.+|..++..++..|+  +|+++|+++.....         ..+..... .        .++..   ++
T Consensus       313 ~i~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~  386 (715)
T 1wdk_A          313 DVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TL  386 (715)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ES
T ss_pred             cCCEEEEECC-ChhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEE---EC
Confidence            4579999999 9999999999999999  99999997521110         01111110 0        12332   34


Q ss_pred             chhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCC
Q 028437           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS  150 (209)
Q Consensus        89 d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p-~~~viv~snP~~~  150 (209)
                      ++ +++++||+||.++.              ++....+.+.+.+.++.+ +++  ++||.+..
T Consensus       387 d~-~~~~~aDlVIeaV~--------------e~~~vk~~v~~~l~~~~~~~~I--lasntStl  432 (715)
T 1wdk_A          387 SY-GDFGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDAI--LASNTSTI  432 (715)
T ss_dssp             SS-TTGGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCE--EEECCSSS
T ss_pred             CH-HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeE--EEeCCCCC
Confidence            66 78999999999952              234455677777887774 553  47777653

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=98.31  E-value=1.1e-05  Score=65.14  Aligned_cols=118  Identities=16%  Similarity=0.171  Sum_probs=71.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCC-CcceeEeec--C--Cchh-------hh
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINT-RSEVAGYMG--N--DQLG-------QA   93 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~-~~~v~~~~~--~--~d~~-------~a   93 (209)
                      .++++|+||+|.+|.+++..|++.|.  +|+++++++..  ....++..... ...+.....  +  ++.+       +.
T Consensus        14 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           14 GRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            35899999999999999999999999  99999997521  12222222110 111111110  0  1112       22


Q ss_pred             cCCCCEEEEcCCCCCCCC----CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           94 LEDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        94 ~~~aD~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      +...|++|++||.....+    .+   ....+..|+.....+.+.+.++   ...++++++|..
T Consensus        92 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~  155 (247)
T 3i1j_A           92 FGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSS  155 (247)
T ss_dssp             HSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCG
T ss_pred             CCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcch
Confidence            347899999999743221    12   2345677877777666666432   345678887643

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=98.30  E-value=2.3e-06  Score=69.71  Aligned_cols=108  Identities=19%  Similarity=0.242  Sum_probs=67.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchh---hhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLG---QALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~---~a~~~aD~Vi~~ag  105 (209)
                      ++|+||||+|++|.+++..|++.|.  +|+++++++.  ...++...    ... ..-.++.+   +.+.+.|++|++||
T Consensus        20 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~--~~~~~~~~----~~~-~D~~~~~~~~~~~~~~iD~lv~~Ag   90 (249)
T 1o5i_A           20 KGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEE--LLKRSGHR----YVV-CDLRKDLDLLFEKVKEVDILVLNAG   90 (249)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHTCSE----EEE-CCTTTCHHHHHHHSCCCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHH--HHHhhCCe----EEE-eeHHHHHHHHHHHhcCCCEEEECCC
Confidence            5899999999999999999999998  9999999741  12222110    000 00012333   33448999999999


Q ss_pred             CCCCCC---CC---hhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 028437          106 VPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       106 ~~~~~g---~~---r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ......   .+   ....+..|+..    ++.+++.+++. ..+++|++|.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS  140 (249)
T 1o5i_A           91 GPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK-GWGRIVAITS  140 (249)
T ss_dssp             CCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcc
Confidence            754211   12   23345666655    44555556554 3467888764

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=98.30  E-value=9e-06  Score=66.77  Aligned_cols=115  Identities=13%  Similarity=0.147  Sum_probs=69.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cCCc---hh---hhcCCCCE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LG---QALEDSDV   99 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~---~a~~~aD~   99 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.|+++.  .....++........+..+. +.++   .+   +.+...|+
T Consensus        11 k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   88 (267)
T 3t4x_A           11 KTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVDI   88 (267)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCSE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCCE
Confidence            5799999999999999999999999  9999999752  12222332211111121111 1111   22   23447899


Q ss_pred             EEEcCCCCCCCC---CCh---hHHHHHHHHHHHHH----HHHHHhhCCCeEEEEecC
Q 028437          100 VIIPAGVPRKPG---MTR---DDLFNINAGIVKDL----CSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       100 Vi~~ag~~~~~g---~~r---~~~~~~N~~~~~~i----~~~i~~~~p~~~viv~sn  146 (209)
                      +|++||......   .+.   ...+..|+.....+    ++.+.+ ...+++|++|.
T Consensus        89 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-~~~g~iv~isS  144 (267)
T 3t4x_A           89 LINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIE-RKEGRVIFIAS  144 (267)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTEEEEEEECC
T ss_pred             EEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-CCCCEEEEEcc
Confidence            999999754221   222   23467787774444    454443 34567888764

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=98.30  E-value=1.8e-06  Score=71.09  Aligned_cols=114  Identities=14%  Similarity=0.183  Sum_probs=69.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEee----cCCchhhhcC-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYM----GNDQLGQALE-------   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~----~~~d~~~a~~-------   95 (209)
                      ++|+|+||+|++|.+++..|+++|+  +|++++++....  ....+.....  .+..+.    ..++++++++       
T Consensus        35 k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~g  110 (279)
T 3ctm_A           35 KVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTYGV--HSKAYKCNISDPKSVEETISQQEKDFG  110 (279)
T ss_dssp             CEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHHCS--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            5899999999999999999999998  999999975211  1111211110  111111    0112333333       


Q ss_pred             CCCEEEEcCCCCCC-C----CCC---hhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRK-P----GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~-~----g~~---r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ..|+||++||.... .    ..+   ....+..|+..    ++.+.+.+++.. .+++|++|..
T Consensus       111 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~isS~  173 (279)
T 3ctm_A          111 TIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGSLIITSSI  173 (279)
T ss_dssp             CCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCC
T ss_pred             CCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEECch
Confidence            48999999986532 1    111   22356677776    567777776653 4567777643

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=98.30  E-value=3.7e-06  Score=70.24  Aligned_cols=130  Identities=12%  Similarity=0.091  Sum_probs=72.8

Q ss_pred             ccccccccccCCCCC--CCeEEEEcCCCc--hHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEee-c
Q 028437           13 AKPAGARGYSSESVP--DRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYM-G   86 (209)
Q Consensus        13 ~~~~~~~~~~~~~~~--~~kI~IiGasG~--vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~-~   86 (209)
                      .++.+..++...|..  .++++||||+|+  +|.+++..|++.|.  +|++.++++.. ....++.....  .+..+. +
T Consensus        14 ~~~~gp~~~~~~~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~D   89 (293)
T 3grk_A           14 AQTQGPGSMTAQSGLLQGKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEELG--AFVAGHCD   89 (293)
T ss_dssp             -------------CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred             ccccCCCCCCcccccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CceEEECC
Confidence            344455555544432  257999999988  99999999999998  99999997421 11111211100  011110 0


Q ss_pred             ---CCchhhh-------cCCCCEEEEcCCCCCC-----C--CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEec
Q 028437           87 ---NDQLGQA-------LEDSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (209)
Q Consensus        87 ---~~d~~~a-------~~~aD~Vi~~ag~~~~-----~--g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~s  145 (209)
                         .++.+++       +...|++|++||....     +  ..+   ....+..|+.....+.+.+.++- ..+.||++|
T Consensus        90 v~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is  169 (293)
T 3grk_A           90 VADAASIDAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT  169 (293)
T ss_dssp             TTCHHHHHHHHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence               1122222       3478999999997631     1  122   23457788888888888877654 357888876


Q ss_pred             C
Q 028437          146 N  146 (209)
Q Consensus       146 n  146 (209)
                      .
T Consensus       170 S  170 (293)
T 3grk_A          170 Y  170 (293)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=98.30  E-value=2.3e-06  Score=68.88  Aligned_cols=117  Identities=18%  Similarity=0.131  Sum_probs=70.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEecCCch--hHHHhhcCCCCCcceeEee-cC---Cchhhhc---
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIANTP--GVAADVGHINTRSEVAGYM-GN---DQLGQAL---   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~-----ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~---~d~~~a~---   94 (209)
                      ++|+|+||+|++|.+++..|++.|...     +|++.++++..  ....++....  ..+..+. +-   +++++++   
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccC--CeeeEEEecCCCHHHHHHHHHHH
Confidence            479999999999999999999988622     78999987421  1122332211  1122111 11   1223333   


Q ss_pred             ----CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           95 ----EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        95 ----~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                          .+.|+||++||......   .+   ....+..|+.....+.+.+.++   ...+++|++|..
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~  146 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSV  146 (244)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence                37999999999763211   12   3345677877777666665432   245678888754

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=98.30  E-value=3.5e-06  Score=70.03  Aligned_cols=114  Identities=18%  Similarity=0.219  Sum_probs=71.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cCC---chhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a-------~~   95 (209)
                      +.++||||+|.+|.+++..|++.|.  +|+++|++..  .....++.....  .+..+. +.+   +.+++       +.
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (283)
T 3v8b_A           29 PVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGAGG--QAIALEADVSDELQMRNAVRDLVLKFG  104 (283)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999999  9999999752  222334433221  111111 111   22222       34


Q ss_pred             CCCEEEEcCCCCCC--C--CCC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRK--P--GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~--~--g~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~snP  147 (209)
                      ..|++|++||....  +  ..+   ....+..|+.....+.+.+    ++. ..+.+|++|..
T Consensus       105 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS~  166 (283)
T 3v8b_A          105 HLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR-GGGAIVVVSSI  166 (283)
T ss_dssp             CCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCS
T ss_pred             CCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCceEEEEcCh
Confidence            78999999997432  1  222   2345677877666666655    433 45778888754

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=98.30  E-value=3.4e-06  Score=69.99  Aligned_cols=115  Identities=15%  Similarity=0.199  Sum_probs=70.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEee-c---CCchhhh-------c
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-G---NDQLGQA-------L   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a-------~   94 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.|++..   .....++.... ...+..+. +   .++.+++       +
T Consensus        26 k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           26 KTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            4799999999999999999999999  9999998431   12222333221 01121111 0   1122222       3


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCC
Q 028437           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~snP  147 (209)
                      ...|++|++||......   .+   ....+..|+.....+.+.+    .+. ..+++|++|..
T Consensus       103 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~  164 (281)
T 3v2h_A          103 GGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKK-GWGRIINIASA  164 (281)
T ss_dssp             SSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECCc
Confidence            47899999999754221   12   2345677877766666665    333 35678887643

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=98.30  E-value=2.2e-06  Score=70.36  Aligned_cols=116  Identities=21%  Similarity=0.251  Sum_probs=68.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-------~   95 (209)
                      ++++|+||+|.+|.+++..|++.|.  +|+++++++..  ....++........+..+. +   .+++++++       .
T Consensus        14 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   91 (267)
T 1iy8_A           14 RVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   91 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999998  99999997521  1122222110001111111 1   11233333       3


Q ss_pred             CCCEEEEcCCCCCCCC----CC---hhHHHHHHHHHH----HHHHHHHHhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPG----MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ..|++|++||.....+    .+   ....+..|+...    +.+++.+++.. .+++|++|..
T Consensus        92 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  153 (267)
T 1iy8_A           92 RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASV  153 (267)
T ss_dssp             CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCG
T ss_pred             CCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcch
Confidence            7899999999754311    12   233456676544    45555555543 4677777643

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=98.30  E-value=2.8e-06  Score=70.29  Aligned_cols=117  Identities=14%  Similarity=0.110  Sum_probs=71.1

Q ss_pred             CeEEEEcCCCc--hHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee--cCCchhhh-------cCCC
Q 028437           29 RKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM--GNDQLGQA-------LEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~--vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~--~~~d~~~a-------~~~a   97 (209)
                      ++++||||+|+  +|.+++..|++.|.  +|++.+++.......++.............  ..++++++       +...
T Consensus        27 k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i  104 (280)
T 3nrc_A           27 KKILITGLLSNKSIAYGIAKAMHREGA--ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDGL  104 (280)
T ss_dssp             CEEEECCCCSTTCHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSSC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHcCC--EEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence            58999999977  99999999999998  999999976322333332221111110000  01122222       3467


Q ss_pred             CEEEEcCCCCCCC---C-----CC---hhHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecCC
Q 028437           98 DVVIIPAGVPRKP---G-----MT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNP  147 (209)
Q Consensus        98 D~Vi~~ag~~~~~---g-----~~---r~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~snP  147 (209)
                      |++|++||.....   +     .+   ....+..|+.....+.+.+...-  ..+.+|++|..
T Consensus       105 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~  167 (280)
T 3nrc_A          105 DAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYI  167 (280)
T ss_dssp             CEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECG
T ss_pred             CEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecc
Confidence            9999999976421   1     12   23356778777777777665542  25677777643

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=98.30  E-value=6.1e-07  Score=73.53  Aligned_cols=117  Identities=11%  Similarity=0.081  Sum_probs=73.0

Q ss_pred             CCeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCcceeE--eecCCchhhhcC-------
Q 028437           28 DRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAG--YMGNDQLGQALE-------   95 (209)
Q Consensus        28 ~~kI~IiGas--G~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~-------   95 (209)
                      .++++||||+  |++|.+++..|++.|.  +|+++++++. .....++...........  +...++++++++       
T Consensus         8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (261)
T 2wyu_A            8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (261)
T ss_dssp             TCEEEEESCCSSSSHHHHHHHHHHHHTC--EEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3589999998  9999999999999998  9999999752 112222221100000000  101112333333       


Q ss_pred             CCCEEEEcCCCCCC-----C--CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~-----~--g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      ..|++|++||....     +  ..+   ....+..|+.....+.+.+.+.- ..+++|++|.
T Consensus        86 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  147 (261)
T 2wyu_A           86 GLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY  147 (261)
T ss_dssp             SEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred             CCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence            78999999997532     1  122   33467889988888888887643 2367887764

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=98.29  E-value=2.5e-06  Score=70.53  Aligned_cols=114  Identities=14%  Similarity=0.214  Sum_probs=70.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEe----ecCCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGY----MGNDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~----~~~~d~~~a~-------~   95 (209)
                      ++++|+||+|.+|.+++..|++.|.  +|++.|+++.  .....++.....  .+..+    ...++.++++       .
T Consensus        27 k~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  102 (271)
T 4ibo_A           27 RTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFRNVGH--DAEAVAFDVTSESEIIEAFARLDEQGI  102 (271)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence            5799999999999999999999998  9999999752  122233322211  11111    0011223333       3


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ..|++|++||......   .+   ....+..|+.....+.+.+.+.   ...+.+|++|.
T Consensus       103 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS  162 (271)
T 4ibo_A          103 DVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGS  162 (271)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            7899999999754221   22   2335677877666665554433   23467888764

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.29  E-value=9.5e-07  Score=77.24  Aligned_cols=76  Identities=16%  Similarity=0.267  Sum_probs=52.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCC------ccEEEEEecCCc---hhHHHhhcCC----------CCCcceeEee
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPL------VSRLALYDIANT---PGVAADVGHI----------NTRSEVAGYM   85 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~------~~ev~l~D~~~~---~~~~~dl~~~----------~~~~~v~~~~   85 (209)
                      ..+|.||+|+|| |..|.+|+..|.++++      ..+|.+|.+++.   +.....++..          ..+..+..  
T Consensus        31 ~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~--  107 (391)
T 4fgw_A           31 AEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVA--  107 (391)
T ss_dssp             --CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEE--
T ss_pred             cCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEE--
Confidence            445679999999 9999999999998763      126999988642   1122223221          12334443  


Q ss_pred             cCCchhhhcCCCCEEEEcC
Q 028437           86 GNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        86 ~~~d~~~a~~~aD~Vi~~a  104 (209)
                       ++|+++++++||+||++.
T Consensus       108 -t~dl~~al~~ad~ii~av  125 (391)
T 4fgw_A          108 -NPDLIDSVKDVDIIVFNI  125 (391)
T ss_dssp             -ESCHHHHHTTCSEEEECS
T ss_pred             -eCCHHHHHhcCCEEEEEC
Confidence             568999999999999985

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=98.29  E-value=3.8e-06  Score=70.74  Aligned_cols=66  Identities=21%  Similarity=0.250  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .+|||+|+|. |.+|..++..|++.|+  +|+++|+++..  ...+....    ...   .+++++++++||+||++.
T Consensus         8 ~~~~IgiIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~v   73 (306)
T 3l6d_A            8 FEFDVSVIGL-GAMGTIMAQVLLKQGK--RVAIWNRSPGK--AAALVAAG----AHL---CESVKAALSASPATIFVL   73 (306)
T ss_dssp             CSCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHT----CEE---CSSHHHHHHHSSEEEECC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhcCCEEEEEe
Confidence            4579999999 9999999999999999  99999997532  22222211    111   246788899999999985

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.29  E-value=5.4e-06  Score=69.11  Aligned_cols=100  Identities=16%  Similarity=0.234  Sum_probs=62.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC-----Cc----ceeEeecCCchhhhcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----RS----EVAGYMGNDQLGQALEDSD   98 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~-----~~----~v~~~~~~~d~~~a~~~aD   98 (209)
                      +|||+|+|+ |.+|..++..|.+.|+  +|+++|+++...  ..+.+...     ..    .+... ...+..++++++|
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d   76 (316)
T 2ew2_A            3 AMKIAIAGA-GAMGSRLGIMLHQGGN--DVTLIDQWPAHI--EAIRKNGLIADFNGEEVVANLPIF-SPEEIDHQNEQVD   76 (316)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHHCEEEEETTEEEEECCCEE-CGGGCCTTSCCCS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCHHHH--HHHHhCCEEEEeCCCeeEecceee-cchhhcccCCCCC
Confidence            479999999 9999999999999999  999999975211  11211110     00    01111 0112223445999


Q ss_pred             EEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 028437           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (209)
Q Consensus        99 ~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~  149 (209)
                      +||++...                ....++++.+.++. ++..++.++|..+
T Consensus        77 ~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~  112 (316)
T 2ew2_A           77 LIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLG  112 (316)
T ss_dssp             EEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSC
T ss_pred             EEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence            99999631                11355666776654 5677777888765

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=98.29  E-value=8.1e-06  Score=67.80  Aligned_cols=118  Identities=15%  Similarity=0.194  Sum_probs=75.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch---------hHHHhhcCCCCCcceeEee-c---CCchhhhc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---------GVAADVGHINTRSEVAGYM-G---NDQLGQAL   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~---------~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~   94 (209)
                      .++++||||+|.+|.+++..|++.|.  +|++++++...         ....++....  ..+..+. +   .++.++++
T Consensus         9 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~   84 (285)
T 3sc4_A            9 GKTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSAEPHPKLPGTIYTAAKEIEEAG--GQALPIVGDIRDGDAVAAAV   84 (285)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHHT--SEEEEEECCTTSHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECChhhhhhhhHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHH
Confidence            35899999999999999999999999  99999997421         1122222211  1111111 1   11222233


Q ss_pred             -------CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhhC---CCeEEEEecCCCC
Q 028437           95 -------EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNPVN  149 (209)
Q Consensus        95 -------~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~~---p~~~viv~snP~~  149 (209)
                             ...|++|++||.....   ..+   ....+..|+.....+.+.+.+.-   ..+.+|++|....
T Consensus        85 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~  155 (285)
T 3sc4_A           85 AKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIR  155 (285)
T ss_dssp             HHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCC
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhh
Confidence                   3899999999975321   122   23456789988888888776653   3568888876443

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=98.28  E-value=5.4e-06  Score=68.77  Aligned_cols=120  Identities=18%  Similarity=0.183  Sum_probs=72.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cCCc----hhh-------
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ----LGQ-------   92 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d----~~~-------   92 (209)
                      ..++|+||||+|.+|.+++..|++.|.  +|++.+++..  .....++..... ..+..+. +-++    .++       
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~   87 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKT   87 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHH
Confidence            345799999999999999999999998  9999999752  222334433221 1222211 1112    112       


Q ss_pred             hcCCCCEEEEcCCCCCCC---------------------------------CCC---hhHHHHHHHHHHHHHHHHHHhh-
Q 028437           93 ALEDSDVVIIPAGVPRKP---------------------------------GMT---RDDLFNINAGIVKDLCSAIAKY-  135 (209)
Q Consensus        93 a~~~aD~Vi~~ag~~~~~---------------------------------g~~---r~~~~~~N~~~~~~i~~~i~~~-  135 (209)
                      .+...|++|++||.....                                 ..+   ....+..|+.....+.+.+... 
T Consensus        88 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l  167 (311)
T 3o26_A           88 HFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLL  167 (311)
T ss_dssp             HHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             hCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhh
Confidence            234799999999975210                                 011   1234677877766666655432 


Q ss_pred             --CCCeEEEEecCCCC
Q 028437          136 --CPNAIVNMISNPVN  149 (209)
Q Consensus       136 --~p~~~viv~snP~~  149 (209)
                        .+.++||++|....
T Consensus       168 ~~~~~~~IV~isS~~~  183 (311)
T 3o26_A          168 QLSDSPRIVNVSSSTG  183 (311)
T ss_dssp             TTSSSCEEEEECCGGG
T ss_pred             ccCCCCeEEEEecCCc
Confidence              34568888876543

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=98.28  E-value=1.2e-06  Score=71.44  Aligned_cols=110  Identities=14%  Similarity=0.184  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhc-------C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQAL-------E   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------~   95 (209)
                      ++++|+||+|.+|.+++..|++.|.  +|++.++++..  ....++..     .+..+.    ..+++++++       .
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   73 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELGD-----NLYIAQLDVRNRAAIEEMLASLPAEWC   73 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHTSCTTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC-----ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            3789999999999999999999998  99999997421  11222221     111110    011222332       3


Q ss_pred             CCCEEEEcCCCCC--CC--CCC---hhHHHHHHHHHHHHHHHHHH----hhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPR--KP--GMT---RDDLFNINAGIVKDLCSAIA----KYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~--~~--g~~---r~~~~~~N~~~~~~i~~~i~----~~~p~~~viv~sn  146 (209)
                      +.|++|++||...  .+  ..+   ....+..|+.....+.+.+.    +. ..+.+|++|.
T Consensus        74 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS  134 (248)
T 3asu_A           74 NIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER-NHGHIINIGS  134 (248)
T ss_dssp             CCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECC
T ss_pred             CCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEcc
Confidence            6899999999752  11  122   23456778766555555443    33 3467777764

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=98.28  E-value=1.1e-05  Score=66.39  Aligned_cols=115  Identities=15%  Similarity=0.113  Sum_probs=69.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhhc--------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQAL--------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~--------   94 (209)
                      ++++|+||+|.+|.+++..|++.|.  +|+++++++..  ....++.....  .+..+. +   .++.++++        
T Consensus        22 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   97 (273)
T 1ae1_A           22 TTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHVFD   97 (273)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999998  99999997521  11222322111  111111 1   11222222        


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      ...|++|++||.....   ..+   ....+..|+.....+.+.+..+   ...+.+|++|..
T Consensus        98 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~  159 (273)
T 1ae1_A           98 GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSI  159 (273)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCG
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCH
Confidence            5789999999975321   122   2334567777666666655321   234678888653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.28  E-value=6.8e-06  Score=60.15  Aligned_cols=34  Identities=24%  Similarity=0.342  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .|||+|+|+ |.+|..++..|.+.|+  +|+++|+++
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~--~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCH
Confidence            369999999 9999999999999998  999999975

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=98.28  E-value=2.8e-06  Score=69.02  Aligned_cols=112  Identities=17%  Similarity=0.190  Sum_probs=69.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhh-------hcCCCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQ-------ALEDSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~-------a~~~aD~Vi  101 (209)
                      ++|+|+||+|.+|.+++..|++.|.  +|++.++++....  ++..  ...++..   .+++++       .+...|++|
T Consensus        16 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~--~~~~--~~~D~~~---~~~~~~~~~~~~~~~g~id~lv   86 (247)
T 1uzm_A           16 RSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPK--GLFG--VEVDVTD---SDAVDRAFTAVEEHQGPVEVLV   86 (247)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCT--TSEE--EECCTTC---HHHHHHHHHHHHHHHSSCSEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHH--HhcC--eeccCCC---HHHHHHHHHHHHHHcCCCCEEE
Confidence            5899999999999999999999998  9999999742111  1110  0001100   111222       234689999


Q ss_pred             EcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCC
Q 028437          102 IPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVN  149 (209)
Q Consensus       102 ~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP~~  149 (209)
                      ++||.....   ..+   ....+..|+.....+.+.+.++   ...+++|++|....
T Consensus        87 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~  143 (247)
T 1uzm_A           87 SNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSG  143 (247)
T ss_dssp             EECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhh
Confidence            999975321   122   3345677877776666655432   34577888876543

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.28  E-value=6.2e-06  Score=69.81  Aligned_cols=102  Identities=15%  Similarity=0.171  Sum_probs=63.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHh---hcCCCCCccee--EeecCCchhhhcCCCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAAD---VGHINTRSEVA--GYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~d---l~~~~~~~~v~--~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      |||+|+|+ |.+|..++..|.+.|+  +|.++++++.......   +..... ....  ....+++.+++.+++|+||++
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~~~i~~~Gl~~~~~~~-g~~~~~~~~~~~~~~~~~~~~DlVila   78 (320)
T 3i83_A            3 LNILVIGT-GAIGSFYGALLAKTGH--CVSVVSRSDYETVKAKGIRIRSATL-GDYTFRPAAVVRSAAELETKPDCTLLC   78 (320)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHTTC--EEEEECSTTHHHHHHHCEEEEETTT-CCEEECCSCEESCGGGCSSCCSEEEEC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCChHHHHHhCCcEEeecCC-CcEEEeeeeeECCHHHcCCCCCEEEEe
Confidence            69999999 9999999999999998  9999999752111110   111011 1111  011123555555699999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCC
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~  150 (209)
                      .-...                +.++++.++.+- ++..++.+.|..+.
T Consensus        79 vK~~~----------------~~~~l~~l~~~l~~~t~Iv~~~nGi~~  110 (320)
T 3i83_A           79 IKVVE----------------GADRVGLLRDAVAPDTGIVLISNGIDI  110 (320)
T ss_dssp             CCCCT----------------TCCHHHHHTTSCCTTCEEEEECSSSSC
T ss_pred             cCCCC----------------hHHHHHHHHhhcCCCCEEEEeCCCCCh
Confidence            63321                012334455443 56778888898763

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=98.27  E-value=4.1e-06  Score=68.97  Aligned_cols=115  Identities=16%  Similarity=0.179  Sum_probs=69.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhh-cCCCCCcceeEee-c---CCchhhhc-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADV-GHINTRSEVAGYM-G---NDQLGQAL-------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl-~~~~~~~~v~~~~-~---~~d~~~a~-------   94 (209)
                      ++++||||+|++|.+++..|++.|.  +|+++++++..  ....++ .....  .+..+. +   .+++++++       
T Consensus        22 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~   97 (267)
T 1vl8_A           22 RVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKYGV--ETMAFRCDVSNYEEVKKLLEAVKEKF   97 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHCC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999998  99999997421  112222 11010  111111 1   11222333       


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      ...|++|++||......   .+   ....+..|+.....+.+.+.++   ...+.+|++|..
T Consensus        98 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~  159 (267)
T 1vl8_A           98 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSL  159 (267)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCG
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence            37899999999754221   12   2345677877776666655432   234677777643

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=98.27  E-value=8.8e-06  Score=66.81  Aligned_cols=115  Identities=16%  Similarity=0.189  Sum_probs=68.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch---hHHHhhcCCCCCcceeEee-cCC---chhhhc------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYM-GND---QLGQAL------   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~---~~~~dl~~~~~~~~v~~~~-~~~---d~~~a~------   94 (209)
                      .+.++|+||+|.+|.+++..|++.|.  +|++.+++...   ....++.....  ++..+. +-+   +.++++      
T Consensus        25 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~  100 (269)
T 3gk3_A           25 KRVAFVTGGMGGLGAAISRRLHDAGM--AVAVSHSERNDHVSTWLMHERDAGR--DFKAYAVDVADFESCERCAEKVLAD  100 (269)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEECSCHHHHHHHHHHHHTTTC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHH
Confidence            34789999999999999999999999  99999854321   11222222211  111111 111   222223      


Q ss_pred             -CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        95 -~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                       ...|++|++||......   .+   ....+..|+.....+.+.+...   ...+++|++|.
T Consensus       101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS  162 (269)
T 3gk3_A          101 FGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGS  162 (269)
T ss_dssp             HSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence             37899999999754221   22   2345677777666666555432   24577888874

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.27  E-value=1.1e-06  Score=72.63  Aligned_cols=116  Identities=14%  Similarity=0.191  Sum_probs=69.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCC-CcceeEee-cCC---chhhhc-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINT-RSEVAGYM-GND---QLGQAL-------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~-~~~v~~~~-~~~---d~~~a~-------   94 (209)
                      ++++||||+|.+|.+++..|++.|.  +|+++++++..  ....++..... ...+..+. +-+   ++++++       
T Consensus         7 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (280)
T 1xkq_A            7 KTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   84 (280)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            4799999999999999999999998  99999997521  12223322111 00122111 111   222333       


Q ss_pred             CCCCEEEEcCCCCCCCC-------CC---hhHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPG-------MT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g-------~~---r~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~sn  146 (209)
                      ...|++|++||......       .+   ....+..|+.....+.+.+.++-  ..+.+|++|.
T Consensus        85 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS  148 (280)
T 1xkq_A           85 GKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSS  148 (280)
T ss_dssp             SCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecC
Confidence            37899999999753211       12   23456678776666666555431  1267777764

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=98.27  E-value=5.6e-06  Score=67.24  Aligned_cols=121  Identities=18%  Similarity=0.160  Sum_probs=69.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec-CCc--hhHHHhhcCCCCCcceeE--eecCCchhhhc-----
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANT--PGVAADVGHINTRSEVAG--YMGNDQLGQAL-----   94 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~-~~~--~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~-----   94 (209)
                      ..+.++|+||||+|.+|.+++..|++.|.  +|++.++ +..  .....++...........  +...++.++++     
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF--RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKA   87 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTE--EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHH
Confidence            34456899999999999999999999998  8999884 321  122222322211111100  10011222333     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHH----HHHHhhCCCeEEEEecCCC
Q 028437           95 --EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus        95 --~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~----~~i~~~~p~~~viv~snP~  148 (209)
                        ...|++|++||.....   ..+   ....+..|+.....+.    +.+.+. ..+++|++|...
T Consensus        88 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~  152 (256)
T 3ezl_A           88 EVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVER-GWGRIINISSVN  152 (256)
T ss_dssp             HTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCCC
T ss_pred             hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEcchh
Confidence              3789999999976422   122   2345677877755554    444443 346788887643

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.27  E-value=2.2e-06  Score=71.32  Aligned_cols=64  Identities=11%  Similarity=0.203  Sum_probs=49.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||+|+|+ |.+|..++..|.+.|+  +|+++|+++...  ..+.+..    +..   .++++++++++|+||++.
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~--~~~~~~g----~~~---~~~~~~~~~~aDvvi~~v   65 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGC--SVTIWNRSPEKA--EELAALG----AER---AATPCEVVESCPVTFAML   65 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGG--HHHHHTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Cee---cCCHHHHHhcCCEEEEEc
Confidence            69999999 9999999999999999  999999975322  2222221    111   346788899999999985

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.27  E-value=4.6e-06  Score=63.06  Aligned_cols=72  Identities=14%  Similarity=0.211  Sum_probs=47.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhc-CCCCCcceeEeecCCc---hhhh-cCCCCEE
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG-HINTRSEVAGYMGNDQ---LGQA-LEDSDVV  100 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~-~~~~~~~v~~~~~~~d---~~~a-~~~aD~V  100 (209)
                      .+.++|+|+|+ |.+|..++..|...|+  +|+++|+++..  ...+. ....  .+. .....+   ++++ ++++|+|
T Consensus        17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~--~V~vid~~~~~--~~~~~~~~g~--~~~-~~d~~~~~~l~~~~~~~ad~V   88 (155)
T 2g1u_A           17 QKSKYIVIFGC-GRLGSLIANLASSSGH--SVVVVDKNEYA--FHRLNSEFSG--FTV-VGDAAEFETLKECGMEKADMV   88 (155)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCGGG--GGGSCTTCCS--EEE-ESCTTSHHHHHTTTGGGCSEE
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHhcCCC--cEE-EecCCCHHHHHHcCcccCCEE
Confidence            34579999998 9999999999999998  99999997532  22222 1111  111 001111   3333 6789999


Q ss_pred             EEcCC
Q 028437          101 IIPAG  105 (209)
Q Consensus       101 i~~ag  105 (209)
                      |.+.+
T Consensus        89 i~~~~   93 (155)
T 2g1u_A           89 FAFTN   93 (155)
T ss_dssp             EECSS
T ss_pred             EEEeC
Confidence            99964

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=98.27  E-value=5.4e-06  Score=68.21  Aligned_cols=114  Identities=18%  Similarity=0.165  Sum_probs=68.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEee-c---CCchhhhc-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-G---NDQLGQAL-------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~-------   94 (209)
                      ++|+||||+|.+|.+++..|++.|.  +|++.+++..   .....++.....  ++..+. +   .++.++++       
T Consensus        30 k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~  105 (271)
T 4iin_A           30 KNVLITGASKGIGAEIAKTLASMGL--KVWINYRSNAEVADALKNELEEKGY--KAAVIKFDAASESDFIEAIQTIVQSD  105 (271)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999  9999999532   111222222211  111111 0   11222333       


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      .+.|++|++||......   .+   ....+..|+.....+.+.+.++   .+.+.++++|.
T Consensus       106 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS  166 (271)
T 4iin_A          106 GGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVAS  166 (271)
T ss_dssp             SSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEec
Confidence            37899999999764321   12   2345667776665555544332   23467777764

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=98.27  E-value=3.8e-06  Score=69.30  Aligned_cols=119  Identities=14%  Similarity=0.131  Sum_probs=71.4

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEee-c---CCchhhh---
Q 028437           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-G---NDQLGQA---   93 (209)
Q Consensus        24 ~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a---   93 (209)
                      +|...+.++||||+|.+|.+++..|++.|.  +|++.+....   .....++.....  ++..+. +   .++.+++   
T Consensus        23 m~~~~k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~   98 (267)
T 3u5t_A           23 MMETNKVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAGG--KALTAQADVSDPAAVRRLFAT   98 (267)
T ss_dssp             ----CCEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHH
Confidence            344446799999999999999999999998  9888755321   111222222111  111111 1   1122222   


Q ss_pred             ----cCCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           94 ----LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        94 ----~~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                          +...|++|++||......   .+   ....+..|+.....+++.+.+.- +.+.+|++|.
T Consensus        99 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  162 (267)
T 3u5t_A           99 AEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMST  162 (267)
T ss_dssp             HHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence                347899999999754221   12   23456789888888887776653 3467888864

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=98.26  E-value=5.4e-06  Score=67.68  Aligned_cols=114  Identities=13%  Similarity=0.100  Sum_probs=69.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-c---CCchhhhcC------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-G---NDQLGQALE------   95 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~~------   95 (209)
                      .++++||||+|.+|.+++..|++.|.  +|++.|+++.  .....++.....  .+..+. +   .++.+++++      
T Consensus         7 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            7 NATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAAGG--RIVARSLDARNEDEVTAFLNAADAHA   82 (252)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECcCCCHHHHHHHHHHHHhhC
Confidence            35799999999999999999999999  9999999753  222233332211  121111 1   112333333      


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHH----HHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~----i~~~~p~~~viv~sn  146 (209)
                      ..|++|++||......   .+   ....+..|+.....+.+.    +++. ..+.+|++|.
T Consensus        83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS  142 (252)
T 3h7a_A           83 PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAH-GQGKIFFTGA  142 (252)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEE
T ss_pred             CceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECC
Confidence            6799999999754211   22   234566776655555544    4443 3567777764

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=98.26  E-value=4e-06  Score=68.15  Aligned_cols=108  Identities=21%  Similarity=0.250  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee-EeecCCchhhhc-------CCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA-GYMGNDQLGQAL-------EDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~-------~~aD~V  100 (209)
                      ++++|+||+|.+|.+++..|++.|.  +|+++++++..      ...... .+. ++...+++++++       .+.|++
T Consensus         8 k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~------~~~~~~-~~~~D~~d~~~~~~~~~~~~~~~g~id~l   78 (250)
T 2fwm_X            8 KNVWVTGAGKGIGYATALAFVEAGA--KVTGFDQAFTQ------EQYPFA-TEVMDVADAAQVAQVCQRLLAETERLDAL   78 (250)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCCCS------SCCSSE-EEECCTTCHHHHHHHHHHHHHHCSCCCEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCchhh------hcCCce-EEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5899999999999999999999998  99999997421      000000 000 000011233333       378999


Q ss_pred             EEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecC
Q 028437          101 IIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (209)
Q Consensus       101 i~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~sn  146 (209)
                      |++||.....   ..+   ....+..|+.....+.+.+    ++. ..+++|++|.
T Consensus        79 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS  133 (250)
T 2fwm_X           79 VNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQ-RGGAIVTVAS  133 (250)
T ss_dssp             EECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECC
T ss_pred             EECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhc-CCCEEEEECc
Confidence            9999975321   122   2345677877666666555    443 3457777764

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.26  E-value=2.1e-06  Score=71.93  Aligned_cols=116  Identities=12%  Similarity=0.222  Sum_probs=69.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCC-CcceeEee-c---CCchhhhc-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINT-RSEVAGYM-G---NDQLGQAL-------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~-~~~v~~~~-~---~~d~~~a~-------   94 (209)
                      ++++||||+|.+|..++..|++.|.  +|+++++++..  ....++..... ...+..+. +   .+++++++       
T Consensus        27 k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  104 (297)
T 1xhl_A           27 KSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF  104 (297)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999  99999997521  11222321110 00121111 1   11223333       


Q ss_pred             CCCCEEEEcCCCCCCCC-----CC---hhHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKPG-----MT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g-----~~---r~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~sn  146 (209)
                      ...|++|++||......     .+   ....+..|+.....+.+.+.+.-  ..+.+|++|.
T Consensus       105 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS  166 (297)
T 1xhl_A          105 GKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSS  166 (297)
T ss_dssp             SCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence            37899999999753211     12   23456777776666665554431  1267888764

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=98.26  E-value=3.8e-06  Score=70.00  Aligned_cols=68  Identities=16%  Similarity=0.293  Sum_probs=49.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |.++|||+|+|+ |.+|..++..|...|+  +|+++|+++.  ....+.+..    +..   ..+++++++++|+||++.
T Consensus         1 M~~~~~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~--~~~~~~~~g----~~~---~~~~~~~~~~~D~vi~~v   68 (301)
T 3cky_A            1 MEKSIKIGFIGL-GAMGKPMAINLLKEGV--TVYAFDLMEA--NVAAVVAQG----AQA---CENNQKVAAASDIIFTSL   68 (301)
T ss_dssp             ---CCEEEEECC-CTTHHHHHHHHHHTTC--EEEEECSSHH--HHHHHHTTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHH--HHHHHHHCC----Cee---cCCHHHHHhCCCEEEEEC
Confidence            345689999998 9999999999999998  9999999742  222233322    111   245678888999999985

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=98.25  E-value=8.9e-06  Score=67.16  Aligned_cols=115  Identities=17%  Similarity=0.181  Sum_probs=70.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc----------h----hHHHhhcCCCCCcceeEee-c---CCch
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----------P----GVAADVGHINTRSEVAGYM-G---NDQL   90 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~----------~----~~~~dl~~~~~~~~v~~~~-~---~~d~   90 (209)
                      ++++||||+|.+|.+++..|++.|.  +|+++|+++.          .    .....+....  .++..+. +   .++.
T Consensus        11 k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v   86 (281)
T 3s55_A           11 KTALITGGARGMGRSHAVALAEAGA--DIAICDRCENSDVVGYPLATADDLAETVALVEKTG--RRCISAKVDVKDRAAL   86 (281)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCccccccccccccHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHH
Confidence            5899999999999999999999999  9999999621          0    1111122111  1111111 1   1122


Q ss_pred             hhhc-------CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           91 GQAL-------EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        91 ~~a~-------~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      ++++       ...|++|++||.....   ..+   ....+..|+.....+.+.+..+   ...+.+|++|..
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~  159 (281)
T 3s55_A           87 ESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSM  159 (281)
T ss_dssp             HHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCh
Confidence            2333       3789999999975421   122   2345677887777666664321   245778888743

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.25  E-value=1.7e-05  Score=67.14  Aligned_cols=69  Identities=16%  Similarity=0.263  Sum_probs=49.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhh-hcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQ-ALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~-a~~~aD~Vi~~a  104 (209)
                      .|||+|+|+ |.+|..++..|...|+..+|+++|+++....  .........  ..   ++++++ ++++||+||+++
T Consensus        33 ~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~--~a~~~G~~~--~~---~~~~~~~~~~~aDvVilav  102 (314)
T 3ggo_A           33 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESIS--KAVDLGIID--EG---TTSIAKVEDFSPDFVMLSS  102 (314)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHH--HHHHTTSCS--EE---ESCTTGGGGGCCSEEEECS
T ss_pred             CCEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHHH--HHHHCCCcc--hh---cCCHHHHhhccCCEEEEeC
Confidence            379999998 9999999999999997568999999753211  111111100  11   235667 899999999996

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=98.25  E-value=2.9e-05  Score=63.63  Aligned_cols=117  Identities=14%  Similarity=0.109  Sum_probs=71.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cCC---chhh-------hc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQ-------AL   94 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~-------a~   94 (209)
                      .++++||||+|.+|.+++..|++.|.  +|++.|+++.  .....++........+..+. +-+   +.++       .+
T Consensus         8 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            8 EAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999999  9999999752  12222332210000111111 111   1222       23


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      ...|++|++||.....   ..+   ....+..|+.....+.+.+.++   ...+.+|++|.
T Consensus        86 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS  146 (265)
T 3lf2_A           86 GCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNS  146 (265)
T ss_dssp             CSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECC
Confidence            4789999999975321   122   2345778888777777766543   24567777763

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=98.25  E-value=8.2e-06  Score=66.43  Aligned_cols=117  Identities=19%  Similarity=0.196  Sum_probs=69.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCC-CcceeEee----cCCchhh-------hc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINT-RSEVAGYM----GNDQLGQ-------AL   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~-~~~v~~~~----~~~d~~~-------a~   94 (209)
                      ++++||||+|.+|.+++..|++.|.  +|+++|+++..  ....++..... ........    ..++.++       .+
T Consensus        13 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (252)
T 3f1l_A           13 RIILVTGASDGIGREAAMTYARYGA--TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNY   90 (252)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHhC
Confidence            5899999999999999999999999  99999997521  11222221100 00000000    0111222       23


Q ss_pred             CCCCEEEEcCCCCCC--C--CCCh---hHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           95 EDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~--~--g~~r---~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      ...|++|++||....  +  ..+.   ...+..|+.....+.+.+.++   ...+.+|++|..
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~  153 (252)
T 3f1l_A           91 PRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSS  153 (252)
T ss_dssp             SCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred             CCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECCh
Confidence            478999999997421  1  1222   345677877766666665332   345677777653

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=98.24  E-value=5e-06  Score=68.54  Aligned_cols=113  Identities=12%  Similarity=0.178  Sum_probs=68.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchh-------hhcCCCCE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLG-------QALEDSDV   99 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~-------~a~~~aD~   99 (209)
                      +.++|+||||+|.+|.+++..|++.|.  +|+++|+++..... ....  ...++..   .++.+       +.+...|+
T Consensus        13 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~-~~~~--~~~Dv~~---~~~v~~~~~~~~~~~g~iD~   84 (269)
T 3vtz_A           13 TDKVAIVTGGSSGIGLAVVDALVRYGA--KVVSVSLDEKSDVN-VSDH--FKIDVTN---EEEVKEAVEKTTKKYGRIDI   84 (269)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCC--CTT-SSEE--EECCTTC---HHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhccC-ceeE--EEecCCC---HHHHHHHHHHHHHHcCCCCE
Confidence            335899999999999999999999999  99999997521100 0000  0001100   11122       22347899


Q ss_pred             EEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437          100 VIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus       100 Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      +|++||......   .+   ....+..|+.....+.+.+...   ...+.+|++|..
T Consensus        85 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~  141 (269)
T 3vtz_A           85 LVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASV  141 (269)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECch
Confidence            999999754221   12   2335667877666666554432   245678877643

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=98.24  E-value=9e-07  Score=73.03  Aligned_cols=115  Identities=23%  Similarity=0.205  Sum_probs=69.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCc--ceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.|++............+...  .+...  .....+.+...|++|++||.
T Consensus        29 k~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~Dv~~~~~~~~~--~~~~~~~~g~iD~lvnnAg~  104 (266)
T 3uxy_A           29 KVALVTGAAGGIGGAVVTALRAAGA--RVAVADRAVAGIAADLHLPGDLREAAYADGL--PGAVAAGLGRLDIVVNNAGV  104 (266)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEECSSCCTTSCCSEECCCCTTSHHHHHHH--HHHHHHHHSCCCEEEECCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHhhhccCcCCCCHHHHHHH--HHHHHHhcCCCCEEEECCCC
Confidence            4799999999999999999999998  999999964211100000111000  00000  00122334589999999997


Q ss_pred             CCCCC---CC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCCC
Q 028437          107 PRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNPV  148 (209)
Q Consensus       107 ~~~~g---~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~snP~  148 (209)
                      .....   .+   ....+..|+.....+.+.+    ++. ..++||++|...
T Consensus       105 ~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~  155 (266)
T 3uxy_A          105 ISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAA-GGGAIVNVASCW  155 (266)
T ss_dssp             CCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSB
T ss_pred             CCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECCHH
Confidence            64221   12   2345667877777666665    433 456788886543

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=98.24  E-value=7.3e-06  Score=67.70  Aligned_cols=115  Identities=20%  Similarity=0.167  Sum_probs=69.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC-------------Cc--hhHHHhhcCCCCCcceeEee-cC---Cc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-------------NT--PGVAADVGHINTRSEVAGYM-GN---DQ   89 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~-------------~~--~~~~~dl~~~~~~~~v~~~~-~~---~d   89 (209)
                      +.++||||+|.+|.+++..|++.|.  +|+++|++             +.  .....++.....  .+..+. +-   ++
T Consensus        16 k~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~   91 (280)
T 3pgx_A           16 RVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR--KALTRVLDVRDDAA   91 (280)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTC--CEEEEECCTTCHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHH
Confidence            4799999999999999999999999  99999983             11  111222222211  111111 11   12


Q ss_pred             hhhh-------cCCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCC
Q 028437           90 LGQA-------LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (209)
Q Consensus        90 ~~~a-------~~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~snP  147 (209)
                      .++.       +...|++|++||......   .+   ....+..|+.....+.+.+    .+....+.||++|..
T Consensus        92 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  166 (280)
T 3pgx_A           92 LRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSS  166 (280)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcch
Confidence            2222       347899999999764221   12   2335667776665555554    444446788888753

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=98.24  E-value=2.7e-06  Score=70.46  Aligned_cols=117  Identities=15%  Similarity=0.106  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-cCC---chhhhc------
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-GND---QLGQAL------   94 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~~---d~~~a~------   94 (209)
                      +.++|+||||+|++|..++..|++.|+  +|+++++++..  ....++..... ..+..+. +-+   +.++++      
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~~  103 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKL  103 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhCC-CceEEEeCCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  99999997421  11112211110 0111111 111   222223      


Q ss_pred             -CCCCEEEEc-CCCCCCC--CCCh---hHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecC
Q 028437           95 -EDSDVVIIP-AGVPRKP--GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (209)
Q Consensus        95 -~~aD~Vi~~-ag~~~~~--g~~r---~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~sn  146 (209)
                       .+.|++|++ +|....+  ..+.   ...+..|+.....+.+.+.+.-  ..+.+|++|.
T Consensus       104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS  164 (286)
T 1xu9_A          104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSS  164 (286)
T ss_dssp             HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECC
Confidence             379999999 6764321  1222   3456777776666665554321  1356777754

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=98.24  E-value=1.1e-05  Score=66.70  Aligned_cols=114  Identities=16%  Similarity=0.128  Sum_probs=70.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee----cCCchhhhc------CC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM----GNDQLGQAL------ED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~------~~   96 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.|+++.  .....++.....  .+..+.    ..++.++.+      ..
T Consensus        34 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~g~  109 (275)
T 4imr_A           34 RTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASGG--TAQELAGDLSEAGAGTDLIERAEAIAP  109 (275)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTTC--CEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCC--eEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            5799999999999999999999999  9999999752  222233322211  111111    112223333      37


Q ss_pred             CCEEEEcCCCCCCCC---CCh---hHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g---~~r---~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      .|++|+.||......   .+.   ...+..|+.....+.+.+..+   ...+.||++|.
T Consensus       110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS  168 (275)
T 4imr_A          110 VDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGS  168 (275)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence            899999999754221   222   334677776666665555322   24577888864

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=98.24  E-value=3.3e-06  Score=73.01  Aligned_cols=97  Identities=14%  Similarity=0.210  Sum_probs=62.5

Q ss_pred             CCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCC---CE
Q 028437           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDS---DV   99 (209)
Q Consensus        23 ~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a---D~   99 (209)
                      +.|.++|||+|||. |.+|..++..|++.|+  +|.++|+++.  ...++.....    .   ...+++++++++   |+
T Consensus        17 ~~Mm~~mkIgiIGl-G~mG~~~A~~L~~~G~--~V~v~dr~~~--~~~~l~~~g~----~---~~~s~~e~~~~a~~~Dv   84 (358)
T 4e21_A           17 NLYFQSMQIGMIGL-GRMGADMVRRLRKGGH--ECVVYDLNVN--AVQALEREGI----A---GARSIEEFCAKLVKPRV   84 (358)
T ss_dssp             -----CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTTC----B---CCSSHHHHHHHSCSSCE
T ss_pred             hhhhcCCEEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHH--HHHHHHHCCC----E---EeCCHHHHHhcCCCCCE
Confidence            44556689999998 9999999999999999  9999999753  2233333321    1   124667888888   99


Q ss_pred             EEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                      ||++....                .+.++++.+.... ++.++|..|+-
T Consensus        85 Vi~~vp~~----------------~v~~vl~~l~~~l~~g~iiId~st~  117 (358)
T 4e21_A           85 VWLMVPAA----------------VVDSMLQRMTPLLAANDIVIDGGNS  117 (358)
T ss_dssp             EEECSCGG----------------GHHHHHHHHGGGCCTTCEEEECSSC
T ss_pred             EEEeCCHH----------------HHHHHHHHHHhhCCCCCEEEeCCCC
Confidence            99985321                1233445555544 56666666544

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=98.24  E-value=7.3e-06  Score=68.08  Aligned_cols=115  Identities=15%  Similarity=0.131  Sum_probs=71.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee----cCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM----GNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~----~~~d~~~a-------~~   95 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.|+++.  .....++.....  .+..+.    ..++.+++       +.
T Consensus         9 k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   84 (280)
T 3tox_A            9 KIAIVTGASSGIGRAAALLFAREGA--KVVVTARNGNALAELTDEIAGGGG--EAAALAGDVGDEALHEALVELAVRRFG   84 (280)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHTTTTC--CEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999999  9999999752  222233332211  111110    01122222       34


Q ss_pred             CCCEEEEcCCCCCCCC----CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP  147 (209)
                      ..|++|++||.....+    .+   ....+..|+.....+.+.+.+.   ...+.+|++|..
T Consensus        85 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~  146 (280)
T 3tox_A           85 GLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSF  146 (280)
T ss_dssp             CCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCh
Confidence            7899999999653211    22   2345677877666666655432   345678887654

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=98.23  E-value=4.4e-06  Score=68.42  Aligned_cols=116  Identities=14%  Similarity=0.133  Sum_probs=72.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEe-cCCc--hhHHHhhcCCCCCcceeE--eecCCchhhhc-------CC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IANT--PGVAADVGHINTRSEVAG--YMGNDQLGQAL-------ED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D-~~~~--~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~-------~~   96 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.+ ++..  .....++...........  +...++.++++       ..
T Consensus         9 k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   86 (259)
T 3edm_A            9 RTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGE   86 (259)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            5899999999999999999999998  999884 4332  112233333221111110  10111223333       37


Q ss_pred             CCEEEEcCCCCCCC----CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~----g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      .|++|+.||.....    ..+   ....+..|+.....+.+.+.+.- +.+.+|++|.
T Consensus        87 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  144 (259)
T 3edm_A           87 IHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSS  144 (259)
T ss_dssp             EEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence            89999999865211    122   23457889988888888887654 2457777764

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=98.23  E-value=5.1e-06  Score=68.45  Aligned_cols=112  Identities=26%  Similarity=0.396  Sum_probs=68.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a-------~~   95 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.|+++..  ....++..     .+..+. +   .++.+++       +.
T Consensus        28 k~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (266)
T 3grp_A           28 RKALVTGATGGIGEAIARCFHAQGA--IVGLHGTREDKLKEIAADLGK-----DVFVFSANLSDRKSIKQLAEVAEREME  100 (266)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCS-----SEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----ceEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999998  99999997421  11222221     111111 0   1122222       34


Q ss_pred             CCCEEEEcCCCCCCCC---C---ChhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCC
Q 028437           96 DSDVVIIPAGVPRKPG---M---TRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~---~r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~snP~  148 (209)
                      ..|++|++||......   .   +....+..|+..    ++.+++.+.+. ..++||++|...
T Consensus       101 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~Iv~isS~~  162 (266)
T 3grp_A          101 GIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRR-RYGRIINITSIV  162 (266)
T ss_dssp             SCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCC-
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcEEEEECCHH
Confidence            7899999999754211   1   133456778777    55555555543 456788887543

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=98.23  E-value=5.1e-06  Score=67.30  Aligned_cols=109  Identities=12%  Similarity=0.035  Sum_probs=68.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-e--cCCch--hHHHhhcCCCCCcceeEeecCCchhh-------hcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-D--IANTP--GVAADVGHINTRSEVAGYMGNDQLGQ-------ALED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~-D--~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~-------a~~~   96 (209)
                      ++++|+||+|.+|.+++..|++.|.  +|++. +  +++..  ....++ .   ..++.   ..++.++       .+..
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~r~~~~~~~~~~~~-~---~~~~~---~~~~v~~~~~~~~~~~g~   72 (244)
T 1zmo_A            2 VIALVTHARHFAGPAAVEALTQDGY--TVVCHDASFADAAERQRFESEN-P---GTIAL---AEQKPERLVDATLQHGEA   72 (244)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHS-T---TEEEC---CCCCGGGHHHHHGGGSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCcCCHHHHHHHHHHh-C---CCccc---CHHHHHHHHHHHHHHcCC
Confidence            4799999999999999999999999  99999 6  86421  112223 1   11111   1122222       2347


Q ss_pred             CCEEEEcCCCCCC---C---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           97 SDVVIIPAGVPRK---P---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~---~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                      .|++|++||....   .   ..+   ....+..|+.....+.+.+.++   ...+++|++|.
T Consensus        73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS  134 (244)
T 1zmo_A           73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITS  134 (244)
T ss_dssp             EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence            8999999997543   1   122   2345677877666665555432   34577888864

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.22  E-value=1.4e-05  Score=66.53  Aligned_cols=97  Identities=14%  Similarity=0.231  Sum_probs=63.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      +|||+|||+ |.+|..++..|.+.|+ ..+|.++|+++..  ..++... +  .+..   +.+..++++++|+||++.- 
T Consensus         3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~--~~~l~~~-~--gi~~---~~~~~~~~~~aDvVilav~-   72 (280)
T 3tri_A            3 TSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDK--LDFFKEK-C--GVHT---TQDNRQGALNADVVVLAVK-   72 (280)
T ss_dssp             CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHH--HHHHHHT-T--CCEE---ESCHHHHHSSCSEEEECSC-
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHH--HHHHHHH-c--CCEE---eCChHHHHhcCCeEEEEeC-
Confidence            479999999 9999999999999986 4589999997632  2222221 0  1122   2356788999999999961 


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhh--CCCeEEEEecCCCC
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPVN  149 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~--~p~~~viv~snP~~  149 (209)
                         +            ..+.++++.+..+  .++..++.+++...
T Consensus        73 ---p------------~~~~~vl~~l~~~~l~~~~iiiS~~agi~  102 (280)
T 3tri_A           73 ---P------------HQIKMVCEELKDILSETKILVISLAVGVT  102 (280)
T ss_dssp             ---G------------GGHHHHHHHHHHHHHTTTCEEEECCTTCC
T ss_pred             ---H------------HHHHHHHHHHHhhccCCCeEEEEecCCCC
Confidence               1            1124455555554  35556655555544

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=98.22  E-value=2.1e-06  Score=70.03  Aligned_cols=113  Identities=17%  Similarity=0.136  Sum_probs=70.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee----cCCchhhhc------CCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQAL------EDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~------~~aD   98 (209)
                      +.++||||+|.+|.+++..|++.|.  +|++.+++.. ....++...     +..+.    ..++.++++      ...|
T Consensus        10 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~-~~~~~~~~~-----~~~~~~D~~~~~~v~~~~~~~~~~g~id   81 (257)
T 3tl3_A           10 AVAVVTGGASGLGLATTKRLLDAGA--QVVVLDIRGE-DVVADLGDR-----ARFAAADVTDEAAVASALDLAETMGTLR   81 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCH-HHHHHTCTT-----EEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCchH-HHHHhcCCc-----eEEEECCCCCHHHHHHHHHHHHHhCCCC
Confidence            4799999999999999999999999  9999998542 222222211     11110    011222333      3889


Q ss_pred             EEEEcCCCCCCC-------CC---ChhHHHHHHHHHHHHHHHHHHhh-----------CCCeEEEEecCCCC
Q 028437           99 VVIIPAGVPRKP-------GM---TRDDLFNINAGIVKDLCSAIAKY-----------CPNAIVNMISNPVN  149 (209)
Q Consensus        99 ~Vi~~ag~~~~~-------g~---~r~~~~~~N~~~~~~i~~~i~~~-----------~p~~~viv~snP~~  149 (209)
                      ++|++||.....       ..   +....+..|+.....+.+.+.++           ...+.+|++|....
T Consensus        82 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~  153 (257)
T 3tl3_A           82 IVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAA  153 (257)
T ss_dssp             EEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC-
T ss_pred             EEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhh
Confidence            999999864210       12   23455777887777666665543           23567888876544

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=98.22  E-value=3.5e-06  Score=74.17  Aligned_cols=141  Identities=13%  Similarity=0.090  Sum_probs=89.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhh-cCCCCEEEEcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA-LEDSDVVIIPAGV  106 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a-~~~aD~Vi~~ag~  106 (209)
                      .++|.|+|+ |.+|+.++..|...|+  +|+++|.++..  +..+..........+.+..+.++++ +++||.||++.+.
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~~g~--~vvvId~d~~~--v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~   78 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLSSGV--KMVVLDHDPDH--IETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDD   78 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCHHH--HHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCC
Confidence            468999999 9999999999999999  99999998632  2222222211111110001123444 7899999998531


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC-CCCCcHHHHHHHHHHhCCCCCCcEEEEehhhHHHHHHHH
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN-PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY  185 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn-P~~~~~~i~~~~~~~~~~~p~~~vig~~~lds~r~~~~l  185 (209)
                                 -..|    ..++..+++.+|+..++.-++ +..      .+.+.+.+   .+.++--+...+.++-..+
T Consensus        79 -----------~~~n----~~i~~~ar~~~p~~~Iiara~~~~~------~~~L~~~G---ad~Vi~~~~~~a~~la~~~  134 (413)
T 3l9w_A           79 -----------PQTN----LQLTEMVKEHFPHLQIIARARDVDH------YIRLRQAG---VEKPERETFEGALKTGRLA  134 (413)
T ss_dssp             -----------HHHH----HHHHHHHHHHCTTCEEEEEESSHHH------HHHHHHTT---CSSCEETTHHHHHHHHHHH
T ss_pred             -----------hHHH----HHHHHHHHHhCCCCeEEEEECCHHH------HHHHHHCC---CCEEECccHHHHHHHHHHH
Confidence                       1334    456677778889876665554 432      33455543   5567666665666777777


Q ss_pred             HHHcCCCCCCee
Q 028437          186 AGKANVNVAGLL  197 (209)
Q Consensus       186 a~~l~v~~~~v~  197 (209)
                      -..+|++++.+.
T Consensus       135 L~~lg~~~~~~~  146 (413)
T 3l9w_A          135 LESLGLGPYEAR  146 (413)
T ss_dssp             HHHTTCCHHHHH
T ss_pred             HHHcCCCHHHHH
Confidence            788898886553

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=98.22  E-value=1.3e-05  Score=66.81  Aligned_cols=34  Identities=21%  Similarity=0.175  Sum_probs=31.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEe-cCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D-~~~   64 (209)
                      ++++|+||+|.+|..++..|++.|.  +|++.+ +++
T Consensus        10 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~~   44 (291)
T 1e7w_A           10 PVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   44 (291)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCCH
Confidence            4799999999999999999999998  999999 864

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.21  E-value=1.7e-06  Score=70.72  Aligned_cols=91  Identities=15%  Similarity=0.240  Sum_probs=63.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCc--cEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~--~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      +|||+|+|+ |.+|..++..|.+.|+.  .+|.++|+++..        ..    +..   ..+.+++++++|+||++..
T Consensus         4 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~--------~g----~~~---~~~~~~~~~~~D~vi~~v~   67 (262)
T 2rcy_A            4 NIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSKKN--------TT----LNY---MSSNEELARHCDIIVCAVK   67 (262)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSCCS--------SS----SEE---CSCHHHHHHHCSEEEECSC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCccc--------Cc----eEE---eCCHHHHHhcCCEEEEEeC
Confidence            469999999 99999999999988821  289999997532        11    111   2356678889999999963


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~  150 (209)
                      ..                .+.++++.+..+.++..++..+|....
T Consensus        68 ~~----------------~~~~v~~~l~~~l~~~~vv~~~~gi~~   96 (262)
T 2rcy_A           68 PD----------------IAGSVLNNIKPYLSSKLLISICGGLNI   96 (262)
T ss_dssp             TT----------------THHHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred             HH----------------HHHHHHHHHHHhcCCCEEEEECCCCCH
Confidence            11                124445556555566777777887763

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=98.21  E-value=1.4e-06  Score=69.72  Aligned_cols=103  Identities=17%  Similarity=0.164  Sum_probs=71.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.+++..    .|+.+..   .+      ..+.+.+...|++|++||...
T Consensus         7 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~----~D~~~~~---~v------~~~~~~~g~id~lv~nAg~~~   71 (223)
T 3uce_A            7 TVYVVLGGTSGIGAELAKQLESEHT--IVHVASRQTG----LDISDEK---SV------YHYFETIGAFDHLIVTAGSYA   71 (223)
T ss_dssp             EEEEEETTTSHHHHHHHHHHCSTTE--EEEEESGGGT----CCTTCHH---HH------HHHHHHHCSEEEEEECCCCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEecCCcc----cCCCCHH---HH------HHHHHHhCCCCEEEECCCCCC
Confidence            4789999999999999999999998  9999988532    2232221   00      012233457899999999752


Q ss_pred             CC----CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437          109 KP----GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus       109 ~~----g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      ..    ..+   ....+..|+.....+.+.+.++- +.+.++++|.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS  117 (223)
T 3uce_A           72 PAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSG  117 (223)
T ss_dssp             CCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecc
Confidence            21    122   23457789988888888887654 3467777764

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.21  E-value=5.5e-06  Score=71.58  Aligned_cols=98  Identities=11%  Similarity=0.179  Sum_probs=66.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-------CccEEEEEecCCc-----hhHHHhhcCC----------CCCcceeEee
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNP-------LVSRLALYDIANT-----PGVAADVGHI----------NTRSEVAGYM   85 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g-------~~~ev~l~D~~~~-----~~~~~dl~~~----------~~~~~v~~~~   85 (209)
                      +|||+|+|+ |.+|..++..|++.|       +  +|+++|+++.     ...  .+...          ..+..+..  
T Consensus        21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~--~V~~~~r~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~i~~--   93 (375)
T 1yj8_A           21 PLKISILGS-GNWASAISKVVGTNAKNNYLFEN--EVRMWIRDEFVNGERMVD--IINNKHENTKYLKGVPLPHNIVA--   93 (375)
T ss_dssp             CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCS--CEEEECCSCC---CCHHH--HHHHHCBCTTTSTTCBCCTTEEE--
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCC--eEEEEECChhhhhHHHHH--HHHhcCcccccCCcccCcCCeEE--
Confidence            469999999 999999999999888       7  9999999753     222  22110          01112332  


Q ss_pred             cCCchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHh----hC-CCeEEEEecCCCC
Q 028437           86 GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK----YC-PNAIVNMISNPVN  149 (209)
Q Consensus        86 ~~~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~----~~-p~~~viv~snP~~  149 (209)
                       +++++++++++|+||++...                ..++++++.+..    .. ++..++.++|...
T Consensus        94 -~~~~~ea~~~aDvVilav~~----------------~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~  145 (375)
T 1yj8_A           94 -HSDLASVINDADLLIFIVPC----------------QYLESVLASIKESESIKIASHAKAISLTKGFI  145 (375)
T ss_dssp             -ESSTHHHHTTCSEEEECCCH----------------HHHHHHHHHHTC---CCCCTTCEEEECCCSCE
T ss_pred             -ECCHHHHHcCCCEEEEcCCH----------------HHHHHHHHHHhhhhhccCCCCCEEEEeCCccc
Confidence             34667889999999998521                234666677765    44 5677777777543

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=98.21  E-value=1.8e-05  Score=65.30  Aligned_cols=119  Identities=20%  Similarity=0.190  Sum_probs=73.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch---------hHHHhhcCCCCCcceeEee-cC---Cchhhh-
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---------GVAADVGHINTRSEVAGYM-GN---DQLGQA-   93 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~---------~~~~dl~~~~~~~~v~~~~-~~---~d~~~a-   93 (209)
                      .++++||||+|.+|.+++..|++.|.  +|++.+++...         ....++....  .++..+. +-   ++.++. 
T Consensus         6 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~   81 (274)
T 3e03_A            6 GKTLFITGASRGIGLAIALRAARDGA--NVAIAAKSAVANPKLPGTIHSAAAAVNAAG--GQGLALKCDIREEDQVRAAV   81 (274)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCSCCTTSCCCHHHHHHHHHHHT--SEEEEEECCTTCHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeccchhhhhhHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHH
Confidence            35899999999999999999999998  99999997421         1111221111  1111111 01   112222 


Q ss_pred             ------cCCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCCC
Q 028437           94 ------LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVNS  150 (209)
Q Consensus        94 ------~~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP~~~  150 (209)
                            +...|++|++||......   .+   ....+..|+.....+.+.+..+   .+.+.+|++|.....
T Consensus        82 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~  153 (274)
T 3e03_A           82 AATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSL  153 (274)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCC
T ss_pred             HHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhc
Confidence                  347899999999754221   22   2345677877776666665443   345688888766553

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=98.21  E-value=3.5e-06  Score=68.78  Aligned_cols=114  Identities=11%  Similarity=0.121  Sum_probs=68.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHh-hcCCCCCcceeEee-c---CCchhhhc-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAAD-VGHINTRSEVAGYM-G---NDQLGQAL-------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~d-l~~~~~~~~v~~~~-~---~~d~~~a~-------   94 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++++++....  ...+ +....  .++..+. +   .+++++++       
T Consensus         8 k~vlVTGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~   83 (264)
T 3i4f_A            8 RHALITAGTKGLGKQVTEKLLAKGY--SVTVTYHSDTTAMETMKETYKDVE--ERLQFVQADVTKKEDLHKIVEEAMSHF   83 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHTGGGG--GGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCchhHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            4799999999999999999999999  999997764211  1111 11111  1222211 1   11233333       


Q ss_pred             CCCCEEEEcCCC--CCCC---CCC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCC
Q 028437           95 EDSDVVIIPAGV--PRKP---GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (209)
Q Consensus        95 ~~aD~Vi~~ag~--~~~~---g~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~snP  147 (209)
                      ...|++|++||.  ....   ..+   ..+.+..|+.....+.+.+    ++. ..++++++|..
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~iss~  147 (264)
T 3i4f_A           84 GKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQ-NFGRIINYGFQ  147 (264)
T ss_dssp             SCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCT
T ss_pred             CCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCCeEEEEeec
Confidence            388999999994  2111   112   2345677877766666665    443 45677777643

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=98.21  E-value=1.2e-05  Score=66.43  Aligned_cols=115  Identities=20%  Similarity=0.183  Sum_probs=69.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--------------h----hHHHhhcCCCCCcceeEee-cCC-
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--------------P----GVAADVGHINTRSEVAGYM-GND-   88 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--------------~----~~~~dl~~~~~~~~v~~~~-~~~-   88 (209)
                      +.++||||+|.+|.+++..|++.|.  +|+++|+++.              .    ....++....  .++..+. +.+ 
T Consensus        12 k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   87 (286)
T 3uve_A           12 KVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN--RRIVTAEVDVRD   87 (286)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC--CceEEEEcCCCC
Confidence            5799999999999999999999999  9999998620              1    1112222221  1122111 111 


Q ss_pred             --chhhhc-------CCCCEEEEcCCCCCCCC----CC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCC
Q 028437           89 --QLGQAL-------EDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (209)
Q Consensus        89 --d~~~a~-------~~aD~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~snP  147 (209)
                        +.++++       ...|++|++||......    .+   ....+..|+.....+.+.+    .+....+.||++|..
T Consensus        88 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  166 (286)
T 3uve_A           88 YDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSV  166 (286)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence              222222       37899999999754322    12   2335677776666555544    444446788888753

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.20  E-value=5.7e-06  Score=70.58  Aligned_cols=100  Identities=20%  Similarity=0.307  Sum_probs=65.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-------CccEEEEEecCCc-----hhHHHhhcCC--C------CCcceeEeecC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNP-------LVSRLALYDIANT-----PGVAADVGHI--N------TRSEVAGYMGN   87 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g-------~~~ev~l~D~~~~-----~~~~~dl~~~--~------~~~~v~~~~~~   87 (209)
                      +|||+|+|+ |.+|..++..|++.|       +  +|.++|+++.     ......-.+.  .      ....+..   +
T Consensus         8 ~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~   81 (354)
T 1x0v_A            8 SKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDP--RVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA---V   81 (354)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEE--EEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE---E
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCC--eEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE---E
Confidence            469999999 999999999999888       7  9999999754     2221111110  0      0112222   3


Q ss_pred             CchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 028437           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (209)
Q Consensus        88 ~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~  149 (209)
                      ++++++++++|+||++...                ..+.++++.+..+. ++..++.++|...
T Consensus        82 ~~~~~~~~~aD~Vilav~~----------------~~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           82 PDVVQAAEDADILIFVVPH----------------QFIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             SSHHHHHTTCSEEEECCCG----------------GGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             cCHHHHHcCCCEEEEeCCH----------------HHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence            4667889999999999521                12345556666554 5677777777543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=98.20  E-value=8.2e-06  Score=66.88  Aligned_cols=114  Identities=18%  Similarity=0.089  Sum_probs=68.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-c---CCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-G---NDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a-------~~   95 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.|+++.  .....++.....  ++..+. +   .++.+++       +.
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (264)
T 3ucx_A           12 KVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTGR--RALSVGTDITDDAQVAHLVDETMKAYG   87 (264)
T ss_dssp             CEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999999999  9999999752  122223322211  111111 1   1122222       34


Q ss_pred             CCCEEEEcCCCCCCCC----CC---hhHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~sn  146 (209)
                      ..|++|++||.....+    .+   ....+..|+.....+.+.+...-  ..+.+|++|.
T Consensus        88 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS  147 (264)
T 3ucx_A           88 RVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNS  147 (264)
T ss_dssp             CCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECC
T ss_pred             CCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECc
Confidence            7899999998742211    22   23456677776666665543321  1267777764

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=98.19  E-value=1.1e-05  Score=67.35  Aligned_cols=115  Identities=18%  Similarity=0.135  Sum_probs=73.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh----HHHhhcCCCCCcceeEee-cCC---chhh-------h
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG----VAADVGHINTRSEVAGYM-GND---QLGQ-------A   93 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~----~~~dl~~~~~~~~v~~~~-~~~---d~~~-------a   93 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.+++....    ....+.....  .+..+. +-+   +.++       .
T Consensus        50 k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~  125 (294)
T 3r3s_A           50 RKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEECGR--KAVLLPGDLSDESFARSLVHKAREA  125 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHTTC--CEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHHHH
Confidence            5799999999999999999999999  999998863211    1111211111  111110 011   1222       2


Q ss_pred             cCCCCEEEEcCCCCCCCC----CC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437           94 LEDSDVVIIPAGVPRKPG----MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus        94 ~~~aD~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                      +...|++|++||.....+    .+   ....+..|+.....+.+.+.+.- ..+.||++|..
T Consensus       126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~  187 (294)
T 3r3s_A          126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSI  187 (294)
T ss_dssp             HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCG
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCh
Confidence            347899999999753211    12   34467889999999999887765 34678888653

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=98.19  E-value=1.8e-06  Score=71.92  Aligned_cols=66  Identities=12%  Similarity=0.172  Sum_probs=49.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ||||+|+|+ |.+|..++..|++.|+  +|+++|+++.+..  ++.+..    +..   .+++++++++||+||++..
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~~advvi~~v~   66 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRAGF--DVTVWNRNPAKCA--PLVALG----ARQ---ASSPAEVCAACDITIAMLA   66 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHHTC--CEEEECSSGGGGH--HHHHHT----CEE---CSCHHHHHHHCSEEEECCS
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----Cee---cCCHHHHHHcCCEEEEEcC
Confidence            468999998 9999999999999999  9999999763222  222211    111   3467888999999999963

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=98.19  E-value=1.9e-06  Score=70.54  Aligned_cols=112  Identities=17%  Similarity=0.200  Sum_probs=73.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-cCCc---hh-------hhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-GNDQ---LG-------QALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~~d---~~-------~a~~   95 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.|+++..  ....++..     .+..+. +-+|   .+       +.+.
T Consensus         9 k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (255)
T 4eso_A            9 KKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFGP-----RVHALRSDIADLNEIAVLGAAAGQTLG   81 (255)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----cceEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5899999999999999999999999  99999997521  11122211     111111 0111   11       2334


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                      ..|++|++||......   .+   ....+..|+.....+.+.+.++- ..+.+|++|..
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  140 (255)
T 4eso_A           82 AIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSV  140 (255)
T ss_dssp             SEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence            7899999999764221   12   33457889988888888887653 34678888653

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=98.19  E-value=4.5e-06  Score=69.34  Aligned_cols=116  Identities=15%  Similarity=0.154  Sum_probs=69.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEe----ecCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGY----MGNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~----~~~~d~~~a-------~~   95 (209)
                      +.++||||+|.+|.+++..|++.|.  +|++.|+++.  .....++...... .+..+    ...++.+++       +.
T Consensus        34 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g  110 (281)
T 4dry_A           34 RIALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGGRTGN-IVRAVVCDVGDPDQVAALFAAVRAEFA  110 (281)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHSS-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCC-eEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999999  9999999752  1122222211100 00111    001122222       34


Q ss_pred             CCCEEEEcCCCCCCCC----CC---hhHHHHHHHHHH----HHHHHHHHhhC-CCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPG----MT---RDDLFNINAGIV----KDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g----~~---r~~~~~~N~~~~----~~i~~~i~~~~-p~~~viv~snP  147 (209)
                      ..|++|++||.....+    .+   ....+..|+...    +.+.+.+.+.. ..+.+|++|..
T Consensus       111 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~  174 (281)
T 4dry_A          111 RLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSI  174 (281)
T ss_dssp             CCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence            6799999999753221    22   233566777664    44455555443 25788888753

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.18  E-value=7.3e-06  Score=69.75  Aligned_cols=76  Identities=24%  Similarity=0.316  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-HHhhcC-----CCCCcceeEeecCCchhhhcCCCCEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGH-----INTRSEVAGYMGNDQLGQALEDSDVV  100 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-~~dl~~-----~~~~~~v~~~~~~~d~~~a~~~aD~V  100 (209)
                      ++|||+|+|+ |.+|..++..|.+.|+  +|.++|+++.... ..+...     ............+++++++++++|+|
T Consensus         3 ~~mki~iiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   79 (359)
T 1bg6_A            3 ESKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVI   79 (359)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEE
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEE
Confidence            3479999999 9999999999999998  9999999752211 111100     00000000000124677788999999


Q ss_pred             EEcCC
Q 028437          101 IIPAG  105 (209)
Q Consensus       101 i~~ag  105 (209)
                      |++..
T Consensus        80 i~~v~   84 (359)
T 1bg6_A           80 LIVVP   84 (359)
T ss_dssp             EECSC
T ss_pred             EEeCC
Confidence            99964

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=98.18  E-value=1.8e-06  Score=69.97  Aligned_cols=111  Identities=14%  Similarity=0.175  Sum_probs=70.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEecCCc-hhHHHhhcCCCCCcceeEeecCCchhhhcC-----CCCEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALE-----DSDVV  100 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~-~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~-----~aD~V  100 (209)
                      +++++||||+|.+|.+++..|++ .|.  .|++.|+++. ..........+    +.   ..++.+++++     ..|++
T Consensus         4 ~k~vlITGas~gIG~~~a~~l~~~~g~--~v~~~~~~~~~~~~~~~~~~~D----v~---~~~~v~~~~~~~~~~~id~l   74 (244)
T 4e4y_A            4 MANYLVTGGSKGIGKAVVELLLQNKNH--TVINIDIQQSFSAENLKFIKAD----LT---KQQDITNVLDIIKNVSFDGI   74 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTSTTE--EEEEEESSCCCCCTTEEEEECC----TT---CHHHHHHHHHHTTTCCEEEE
T ss_pred             CCeEEEeCCCChHHHHHHHHHHhcCCc--EEEEeccccccccccceEEecC----cC---CHHHHHHHHHHHHhCCCCEE
Confidence            45799999999999999999998 777  8999998642 11100001111    10   0112222232     68999


Q ss_pred             EEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437          101 IIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus       101 i~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                      |++||.....   ..+   ....+..|+.....+.+.+.+.- ..+.+|++|..
T Consensus        75 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~  128 (244)
T 4e4y_A           75 FLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSD  128 (244)
T ss_dssp             EECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCG
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCH
Confidence            9999975321   122   33457889988888888877653 23577777543

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=98.18  E-value=6.5e-05  Score=61.27  Aligned_cols=116  Identities=20%  Similarity=0.259  Sum_probs=70.4

Q ss_pred             CCeEEEEcCCC-chHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-c---CCchhhhc------
Q 028437           28 DRKVAVLGAAG-GIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-G---NDQLGQAL------   94 (209)
Q Consensus        28 ~~kI~IiGasG-~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~------   94 (209)
                      .++++||||+| .+|.+++..|++.|.  +|+++|++..  .....++.... ..++..+. +   .+++++++      
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            35899999988 499999999999998  9999999752  12223332221 11222211 1   11222333      


Q ss_pred             -CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh----CCCeEEEEecC
Q 028437           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN  146 (209)
Q Consensus        95 -~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~----~p~~~viv~sn  146 (209)
                       ...|++|++||......   .+   ....+..|+.....+.+.+..+    ...+.++++|.
T Consensus        99 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  161 (266)
T 3o38_A           99 AGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNAS  161 (266)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECC
T ss_pred             hCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence             36799999999754221   12   2335667776666665555443    35677777764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.18  E-value=7.8e-06  Score=60.84  Aligned_cols=96  Identities=14%  Similarity=0.190  Sum_probs=60.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCc---hhh-hcCCCCEEEEc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQ-ALEDSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~-a~~~aD~Vi~~  103 (209)
                      ..+|+|+|+ |.+|..++..|.+.|+  +|+++|+++..  ...+...... .+..  ..++   +++ .++++|+||.+
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~--~~~~~~~g~~-~i~g--d~~~~~~l~~a~i~~ad~vi~~   78 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDI--PLVVIETSRTR--VDELRERGVR-AVLG--NAANEEIMQLAHLECAKWLILT   78 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTTCE-EEES--CTTSHHHHHHTTGGGCSEEEEC
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHHcCCC-EEEC--CCCCHHHHHhcCcccCCEEEEE
Confidence            358999999 9999999999999999  99999998532  2222222211 0110  1112   222 25789999998


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      .+..           ..|.    .++..+++.+|+.+++.-.+
T Consensus        79 ~~~~-----------~~n~----~~~~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           79 IPNG-----------YEAG----EIVASARAKNPDIEIIARAH  106 (140)
T ss_dssp             CSCH-----------HHHH----HHHHHHHHHCSSSEEEEEES
T ss_pred             CCCh-----------HHHH----HHHHHHHHHCCCCeEEEEEC
Confidence            5321           2343    23455666788877665554

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=98.18  E-value=1.3e-05  Score=66.06  Aligned_cols=115  Identities=23%  Similarity=0.265  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC-------------Cc--hhHHHhhcCCCCCcceeEee-cCC---c
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-------------NT--PGVAADVGHINTRSEVAGYM-GND---Q   89 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~-------------~~--~~~~~dl~~~~~~~~v~~~~-~~~---d   89 (209)
                      ++++||||+|.+|.+++..|++.|.  +|+++|++             ..  .....++.....  .+..+. +.+   +
T Consensus        12 k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~   87 (277)
T 3tsc_A           12 RVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANR--RIVAAVVDTRDFDR   87 (277)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHH
Confidence            5799999999999999999999999  99999983             11  111112221111  111111 111   1


Q ss_pred             hhhh-------cCCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHH----HHhhCCCeEEEEecCC
Q 028437           90 LGQA-------LEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNP  147 (209)
Q Consensus        90 ~~~a-------~~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~----i~~~~p~~~viv~snP  147 (209)
                      +++.       +...|++|++||......   .+   ....+..|+.....+.+.    +.+..+.+.||++|..
T Consensus        88 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  162 (277)
T 3tsc_A           88 LRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSA  162 (277)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccH
Confidence            2222       346899999999764321   22   233467776655555544    5555556788888753

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=98.17  E-value=8.3e-06  Score=66.46  Aligned_cols=120  Identities=13%  Similarity=0.133  Sum_probs=69.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCC-cceeEee-cCC---chhhh-------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTR-SEVAGYM-GND---QLGQA-------   93 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~-~~v~~~~-~~~---d~~~a-------   93 (209)
                      .++++||||+|.+|.+++..|++.|.  +|+++++++.  .....++...... ..+..+. +-+   +.+++       
T Consensus         7 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            7 KGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            35799999999999999999999998  9999999752  1122222211000 0111110 111   22222       


Q ss_pred             cCCCCEEEEcCCCCCCCC--CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecCCCC
Q 028437           94 LEDSDVVIIPAGVPRKPG--MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVN  149 (209)
Q Consensus        94 ~~~aD~Vi~~ag~~~~~g--~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~snP~~  149 (209)
                      +...|++|++||......  .+   ....+..|+.....+.+.+..+   .+.+.++++|....
T Consensus        85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~  148 (250)
T 3nyw_A           85 YGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAA  148 (250)
T ss_dssp             HCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC---
T ss_pred             cCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHh
Confidence            346899999999753221  11   2345667776665555554322   24577888876443

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=98.17  E-value=2.7e-06  Score=72.32  Aligned_cols=115  Identities=17%  Similarity=0.178  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCC--CCCcceeEee----cCCchhhhcC----
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHI--NTRSEVAGYM----GNDQLGQALE----   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~--~~~~~v~~~~----~~~d~~~a~~----   95 (209)
                      ++++||||+|++|.+++..|++.|.  +|++.+++..   .....++.+.  .....+..+.    ..++.+++++    
T Consensus         6 k~vlVTGas~GIG~aia~~L~~~G~--~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~   83 (324)
T 3u9l_A            6 KIILITGASSGFGRLTAEALAGAGH--RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIG   83 (324)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999  9998887521   1111111110  0001111111    1112334443    


Q ss_pred             ---CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecC
Q 028437           96 ---DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (209)
Q Consensus        96 ---~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~sn  146 (209)
                         +.|++|++||.....   ..+   ....+..|+.....+.+.+    ++. ..+.+|++|.
T Consensus        84 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~-~~g~iV~isS  146 (324)
T 3u9l_A           84 EDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQ-KHGLLIWISS  146 (324)
T ss_dssp             HHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEec
Confidence               899999999975321   112   2345678888777777666    433 4567777764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.17  E-value=4.4e-06  Score=70.33  Aligned_cols=67  Identities=10%  Similarity=0.103  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ++|||+|+|+ |.+|..++..|...|+  +|.++|+++....  .+....    +..   ..+.+++++++|+||++..
T Consensus        29 ~~~~I~iIG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g----~~~---~~~~~~~~~~~DvVi~av~   95 (316)
T 2uyy_A           29 TDKKIGFLGL-GLMGSGIVSNLLKMGH--TVTVWNRTAEKCD--LFIQEG----ARL---GRTPAEVVSTCDITFACVS   95 (316)
T ss_dssp             CSSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSGGGGH--HHHHTT----CEE---CSCHHHHHHHCSEEEECCS
T ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHHcC----CEE---cCCHHHHHhcCCEEEEeCC
Confidence            3579999999 9999999999999998  9999999753222  222211    111   2356778889999999863

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=98.17  E-value=5.3e-06  Score=68.75  Aligned_cols=116  Identities=11%  Similarity=0.092  Sum_probs=72.5

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCC-CCCccee-EeecCCchhhhc-------CC
Q 028437           29 RKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHI-NTRSEVA-GYMGNDQLGQAL-------ED   96 (209)
Q Consensus        29 ~kI~IiGas--G~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~-~~~~~v~-~~~~~~d~~~a~-------~~   96 (209)
                      ++++||||+  |++|.+++..|++.|.  +|+++++++. .....++... .....+. ++...+++++++       ..
T Consensus        22 k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   99 (285)
T 2p91_A           22 KRALITGVANERSIAYGIAKSFHREGA--QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWGS   99 (285)
T ss_dssp             CEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            579999998  8999999999999998  9999999752 1122222211 0000010 010111222333       37


Q ss_pred             CCEEEEcCCCCCC-----C--CCC---hhHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecC
Q 028437           97 SDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~-----~--g~~---r~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~sn  146 (209)
                      .|++|++||....     +  ..+   ....+..|+.....+.+.+.++-  ..+++|++|.
T Consensus       100 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS  161 (285)
T 2p91_A          100 LDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSY  161 (285)
T ss_dssp             CCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEEC
T ss_pred             CCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence            8999999997532     1  122   23467889988888888887653  2467877764

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.15  E-value=6.5e-06  Score=67.51  Aligned_cols=94  Identities=16%  Similarity=0.250  Sum_probs=62.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccE-EEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSR-LALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~e-v~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      +|||+|+|+ |.+|..++..|.+.|+  + |.++|+++..  ...+....   .+..   ..+++++++++|+||++...
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~g~--~~v~~~~~~~~~--~~~~~~~~---g~~~---~~~~~~~~~~~Dvvi~av~~   78 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRKGF--RIVQVYSRTEES--ARELAQKV---EAEY---TTDLAEVNPYAKLYIVSLKD   78 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSHHH--HHHHHHHT---TCEE---ESCGGGSCSCCSEEEECCCH
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHH--HHHHHHHc---CCce---eCCHHHHhcCCCEEEEecCH
Confidence            469999999 9999999999998887  7 8999997532  11222110   1111   23567788999999998521


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~  148 (209)
                               +       ...++++.+.+.. ++..++..++-.
T Consensus        79 ---------~-------~~~~v~~~l~~~~~~~~ivv~~s~~~  105 (266)
T 3d1l_A           79 ---------S-------AFAELLQGIVEGKREEALMVHTAGSI  105 (266)
T ss_dssp             ---------H-------HHHHHHHHHHTTCCTTCEEEECCTTS
T ss_pred             ---------H-------HHHHHHHHHHhhcCCCcEEEECCCCC
Confidence                     0       1255566666555 566777776543

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=98.13  E-value=2.9e-05  Score=64.13  Aligned_cols=97  Identities=14%  Similarity=0.257  Sum_probs=61.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC-CCCEEEEcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPAGV  106 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~-~aD~Vi~~ag~  106 (209)
                      ||||+|+|+ |.+|..++..|...|+..+|+++|+++...  ..+.......  ..   +++++++++ ++|+||++...
T Consensus         1 m~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~--~~~~~~g~~~--~~---~~~~~~~~~~~aDvVilavp~   72 (281)
T 2g5c_A            1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESI--SKAVDLGIID--EG---TTSIAKVEDFSPDFVMLSSPV   72 (281)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHH--HHHHHTTSCS--EE---ESCGGGGGGTCCSEEEECSCH
T ss_pred             CcEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEeCCHHHH--HHHHHCCCcc--cc---cCCHHHHhcCCCCEEEEcCCH
Confidence            369999998 999999999999988644799999975321  1122111110  11   235667888 99999999521


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCC
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPV  148 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~-~p~~~viv~snP~  148 (209)
                      .                ...++++.+..+ .++..++.++|..
T Consensus        73 ~----------------~~~~v~~~l~~~l~~~~iv~~~~~~~   99 (281)
T 2g5c_A           73 R----------------TFREIAKKLSYILSEDATVTDQGSVK   99 (281)
T ss_dssp             H----------------HHHHHHHHHHHHSCTTCEEEECCSCC
T ss_pred             H----------------HHHHHHHHHHhhCCCCcEEEECCCCc
Confidence            1                122444445444 3567777666654

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=98.13  E-value=5.4e-06  Score=68.34  Aligned_cols=116  Identities=13%  Similarity=0.102  Sum_probs=72.6

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCcce-e-EeecCCchhhhc-------CC
Q 028437           29 RKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEV-A-GYMGNDQLGQAL-------ED   96 (209)
Q Consensus        29 ~kI~IiGas--G~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~~v-~-~~~~~~d~~~a~-------~~   96 (209)
                      ++++||||+  |.+|.+++..|++.|.  +|+++++++. .....++......... . ++...+++++++       ..
T Consensus         7 k~vlVTGas~~~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   84 (275)
T 2pd4_A            7 KKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS   84 (275)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            579999998  9999999999999998  9999999752 1122222211000000 0 010011222333       36


Q ss_pred             CCEEEEcCCCCCC-----C--CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           97 SDVVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~-----~--g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      .|++|++||....     +  ..+   ....+..|+.....+.+.+.+.- +.+++|++|.
T Consensus        85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  145 (275)
T 2pd4_A           85 LDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY  145 (275)
T ss_dssp             EEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence            7999999997532     1  122   23467789988888888887653 2367887764

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=98.13  E-value=2.4e-05  Score=66.04  Aligned_cols=115  Identities=17%  Similarity=0.240  Sum_probs=69.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc----------hh----HHHhhcCCCCCcceeEee-cC---Cch
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----------PG----VAADVGHINTRSEVAGYM-GN---DQL   90 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~----------~~----~~~dl~~~~~~~~v~~~~-~~---~d~   90 (209)
                      ++++||||+|.+|.+++..|++.|.  +|+++|++..          ..    ....+....  ..+..+. +-   ++.
T Consensus        47 k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v  122 (317)
T 3oec_A           47 KVAFITGAARGQGRTHAVRLAQDGA--DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG--RRIIARQADVRDLASL  122 (317)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHH
Confidence            5789999999999999999999999  9999987510          11    111121111  1111111 11   122


Q ss_pred             hhhc-------CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCC
Q 028437           91 GQAL-------EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (209)
Q Consensus        91 ~~a~-------~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~snP  147 (209)
                      ++++       ...|++|++||.....   ..+   ....+..|+.....+.+.+    .+....+.||++|..
T Consensus       123 ~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~  196 (317)
T 3oec_A          123 QAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSST  196 (317)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCG
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcH
Confidence            2333       4789999999975421   122   2345677876666555554    443446778888653

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.12  E-value=2.7e-05  Score=64.16  Aligned_cols=91  Identities=15%  Similarity=0.178  Sum_probs=60.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      |||+|+|+ |.+|..++..|...|+  +|+++|+++...  ..+.......  ..   +++++++ +++|+||++...  
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g~~~--~~---~~~~~~~-~~~D~vi~av~~--   67 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTC--EKAVERQLVD--EA---GQDLSLL-QTAKIIFLCTPI--   67 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTTSCS--EE---ESCGGGG-TTCSEEEECSCH--
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHhCCCCc--cc---cCCHHHh-CCCCEEEEECCH--
Confidence            58999998 9999999999999998  999999975321  1222211110  11   2356677 999999999521  


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437          109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus       109 ~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                                    ..+.++++.+.... ++..++.+++
T Consensus        68 --------------~~~~~~~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           68 --------------QLILPTLEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             --------------HHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence                          12355566666554 5666665544

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=98.12  E-value=5e-06  Score=68.32  Aligned_cols=114  Identities=13%  Similarity=0.151  Sum_probs=70.8

Q ss_pred             CeEEEEcC--CCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC-CCCccee--EeecCCchhhhcC--------
Q 028437           29 RKVAVLGA--AGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-NTRSEVA--GYMGNDQLGQALE--------   95 (209)
Q Consensus        29 ~kI~IiGa--sG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~-~~~~~v~--~~~~~~d~~~a~~--------   95 (209)
                      ++++||||  +|.+|.+++..|++.|.  +|++.++++... ..++.+. .......  ++...++.+++++        
T Consensus         8 k~vlVTGa~~s~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (269)
T 2h7i_A            8 KRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRLRL-IQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA   84 (269)
T ss_dssp             CEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEECSCHHH-HHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCchHHHHHHHHHHCCC--EEEEEecChHHH-HHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            47999998  89999999999999998  999999975321 1111111 1000110  0111112333333        


Q ss_pred             --CCCEEEEcCCCCCC------C--CCCh---hHHHHHHHHHHHHHHHHHHhhC-CCeEEEEec
Q 028437           96 --DSDVVIIPAGVPRK------P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (209)
Q Consensus        96 --~aD~Vi~~ag~~~~------~--g~~r---~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~s  145 (209)
                        ..|++|++||....      +  ..+.   ...+..|+.....+.+.+.++- +.+.+|++|
T Consensus        85 ~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  148 (269)
T 2h7i_A           85 GNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD  148 (269)
T ss_dssp             TCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence              78999999997531      1  1222   3456788888888888887653 246777775

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=98.12  E-value=2.6e-05  Score=66.24  Aligned_cols=34  Identities=21%  Similarity=0.175  Sum_probs=31.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEe-cCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D-~~~   64 (209)
                      ++++||||+|.+|..++..|++.|.  +|++++ +++
T Consensus        47 k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~~   81 (328)
T 2qhx_A           47 PVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   81 (328)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            4799999999999999999999998  999999 764

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.12  E-value=6e-06  Score=70.22  Aligned_cols=96  Identities=17%  Similarity=0.258  Sum_probs=60.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCC---C-C---cceeEeecCCchhhhcCCCCE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN---T-R---SEVAGYMGNDQLGQALEDSDV   99 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~---~-~---~~v~~~~~~~d~~~a~~~aD~   99 (209)
                      .+|||+|+|+ |.+|..++..|++.|+  +|.++|+++.+  ...+....   + +   ..+..   +++.++ ++++|+
T Consensus        13 ~~~kI~iIG~-G~mG~ala~~L~~~G~--~V~~~~r~~~~--~~~l~~~g~~~~~~~~~~~~~~---~~~~~~-~~~aDv   83 (335)
T 1z82_A           13 MEMRFFVLGA-GSWGTVFAQMLHENGE--EVILWARRKEI--VDLINVSHTSPYVEESKITVRA---TNDLEE-IKKEDI   83 (335)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHHHSCBTTBTTCCCCSEE---ESCGGG-CCTTEE
T ss_pred             cCCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHhCCcccCCCCeeeEEE---eCCHHH-hcCCCE
Confidence            4579999999 9999999999999999  99999997422  12222111   0 0   01222   235566 889999


Q ss_pred             EEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      ||++...                ..+.++++.+..  ++..+|.++|..+
T Consensus        84 Vil~vk~----------------~~~~~v~~~l~~--~~~~vv~~~nGi~  115 (335)
T 1z82_A           84 LVIAIPV----------------QYIREHLLRLPV--KPSMVLNLSKGIE  115 (335)
T ss_dssp             EEECSCG----------------GGHHHHHTTCSS--CCSEEEECCCCCC
T ss_pred             EEEECCH----------------HHHHHHHHHhCc--CCCEEEEEeCCCC
Confidence            9998531                112333333332  5667777777644

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=98.12  E-value=6.3e-06  Score=67.23  Aligned_cols=118  Identities=14%  Similarity=0.107  Sum_probs=72.5

Q ss_pred             CCCeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCcceeE--eecCCchhhhc-------
Q 028437           27 PDRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAG--YMGNDQLGQAL-------   94 (209)
Q Consensus        27 ~~~kI~IiGas--G~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~-------   94 (209)
                      +.++|+||||+  |.+|.+++..|++.|.  +|++.+++.. .....++...........  +...++.++.+       
T Consensus        13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   90 (271)
T 3ek2_A           13 DGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHW   90 (271)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            34689999998  9999999999999998  9999998742 111222211100000100  10111222333       


Q ss_pred             CCCCEEEEcCCCCCC-----C--C-CC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           95 EDSDVVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~-----~--g-~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      ...|++|++||....     +  . .+   ....+..|+.....+.+.+.+.- +.+.++++|.
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  154 (271)
T 3ek2_A           91 DSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY  154 (271)
T ss_dssp             SCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence            367999999997532     1  1 22   23456788888888888877653 3567777764

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.11  E-value=7.4e-06  Score=70.37  Aligned_cols=68  Identities=15%  Similarity=0.316  Sum_probs=48.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC----------CCCcceeEeecCCchhhhcCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----------NTRSEVAGYMGNDQLGQALEDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~----------~~~~~v~~~~~~~d~~~a~~~aD   98 (209)
                      |||+|+|+ |.+|..++..|.+.|+  +|.++|+++...  ..+.+.          ..+..+..   +++++++++++|
T Consensus        16 ~kI~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~aD   87 (366)
T 1evy_A           16 NKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEV--RLVNEKRENVLFLKGVQLASNITF---TSDVEKAYNGAE   87 (366)
T ss_dssp             EEEEEECC-SHHHHHHHHHHTTTEE--EEEEECSCHHHH--HHHHHHTBCTTTSTTCBCCTTEEE---ESCHHHHHTTCS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHcCcccccccccccccceee---eCCHHHHHcCCC
Confidence            39999999 9999999999999998  999999975221  111110          01112222   246677889999


Q ss_pred             EEEEcC
Q 028437           99 VVIIPA  104 (209)
Q Consensus        99 ~Vi~~a  104 (209)
                      +||++.
T Consensus        88 vVilav   93 (366)
T 1evy_A           88 IILFVI   93 (366)
T ss_dssp             SEEECC
T ss_pred             EEEECC
Confidence            999995

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=98.11  E-value=1.9e-05  Score=65.45  Aligned_cols=116  Identities=16%  Similarity=0.132  Sum_probs=69.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC-chh--HHHhhc-CCCCCcceeEee-cCCc-------hhhh---
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPG--VAADVG-HINTRSEVAGYM-GNDQ-------LGQA---   93 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~-~~~--~~~dl~-~~~~~~~v~~~~-~~~d-------~~~a---   93 (209)
                      ++++||||+|.+|.+++..|++.|.  +|+++++++ ...  ...++. ...  ..+..+. +-++       .+++   
T Consensus        24 k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~~~~~~~~~v~~~~~~   99 (288)
T 2x9g_A           24 PAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNSAEAAVSLADELNKERS--NTAVVCQADLTNSNVLPASCEEIINS   99 (288)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSCSTTHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhhcC--CceEEEEeecCCccCCHHHHHHHHHH
Confidence            4799999999999999999999998  999999975 221  122232 111  1111111 0111       2222   


Q ss_pred             ----cCCCCEEEEcCCCCCCC--------C-----CC---hhHHHHHHHHHHHHHHHHHHhhC---C------CeEEEEe
Q 028437           94 ----LEDSDVVIIPAGVPRKP--------G-----MT---RDDLFNINAGIVKDLCSAIAKYC---P------NAIVNMI  144 (209)
Q Consensus        94 ----~~~aD~Vi~~ag~~~~~--------g-----~~---r~~~~~~N~~~~~~i~~~i~~~~---p------~~~viv~  144 (209)
                          +...|++|++||.....        .     .+   ....+..|+.....+.+.+.+..   .      .+.+|++
T Consensus       100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~i  179 (288)
T 2x9g_A          100 CFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNL  179 (288)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEEE
T ss_pred             HHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEE
Confidence                34789999999975321        1     11   12346677776666666655442   1      4678888


Q ss_pred             cCCC
Q 028437          145 SNPV  148 (209)
Q Consensus       145 snP~  148 (209)
                      |...
T Consensus       180 sS~~  183 (288)
T 2x9g_A          180 CDAM  183 (288)
T ss_dssp             CCTT
T ss_pred             eccc
Confidence            7543

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.11  E-value=1.5e-05  Score=67.16  Aligned_cols=97  Identities=11%  Similarity=0.144  Sum_probs=62.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCC-----CCccee--EeecCCchhhhcCCCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-----TRSEVA--GYMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~-----~~~~v~--~~~~~~d~~~a~~~aD~Vi  101 (209)
                      |||+|+|+ |.+|..++..|.+.|+  +|.++++++. .   .+....     ......  ....+++. ++++++|+||
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~-~---~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~vi   74 (312)
T 3hn2_A            3 LRIAIVGA-GALGLYYGALLQRSGE--DVHFLLRRDY-E---AIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDLVL   74 (312)
T ss_dssp             -CEEEECC-STTHHHHHHHHHHTSC--CEEEECSTTH-H---HHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEEcCcH-H---HHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCEEE
Confidence            69999999 9999999999999998  9999999752 1   111111     001111  01112344 4578999999


Q ss_pred             EcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 028437          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (209)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~  149 (209)
                      ++.-...                +.++++.++.+- ++..++.+.|-.+
T Consensus        75 lavk~~~----------------~~~~l~~l~~~l~~~~~iv~l~nGi~  107 (312)
T 3hn2_A           75 VGLKTFA----------------NSRYEELIRPLVEEGTQILTLQNGLG  107 (312)
T ss_dssp             ECCCGGG----------------GGGHHHHHGGGCCTTCEEEECCSSSS
T ss_pred             EecCCCC----------------cHHHHHHHHhhcCCCCEEEEecCCCC
Confidence            9853210                134456666554 6778888889876

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=98.09  E-value=1.1e-05  Score=68.22  Aligned_cols=114  Identities=23%  Similarity=0.253  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC----------Cc--hhHHHhhcCCCCCcceeEee-cCC---chhh
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA----------NT--PGVAADVGHINTRSEVAGYM-GND---QLGQ   92 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~----------~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~   92 (209)
                      +.++||||+|.+|.+++..|++.|.  +|++.|++          ..  .....++....  .++..+. +.+   +.++
T Consensus        28 k~vlVTGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~  103 (322)
T 3qlj_A           28 RVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG--GEAVADGSNVADWDQAAG  103 (322)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT--CEEEEECCCTTSHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCcccccccccccHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHH
Confidence            4789999999999999999999999  99999986          21  11222332221  1111111 111   2222


Q ss_pred             hc-------CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhC---------CCeEEEEecC
Q 028437           93 AL-------EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC---------PNAIVNMISN  146 (209)
Q Consensus        93 a~-------~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~---------p~~~viv~sn  146 (209)
                      .+       ...|++|++||......   .+   ....+..|+.....+.+.+..+-         +.+.||++|.
T Consensus       104 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS  179 (322)
T 3qlj_A          104 LIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSS  179 (322)
T ss_dssp             HHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECC
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcC
Confidence            23       37899999999764221   22   23456778877666665554321         1368888864

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.09  E-value=3.8e-05  Score=64.97  Aligned_cols=99  Identities=16%  Similarity=0.167  Sum_probs=63.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCC-----CCcceeE-eecCCchhhhcCCCCEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-----TRSEVAG-YMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~-----~~~~v~~-~~~~~d~~~a~~~aD~Vi  101 (209)
                      +|||+|+|+ |.+|..++..|.+.|+  +|.++ +++..  ...+....     ....... ...+++. ++++++|+||
T Consensus        19 ~~kI~IiGa-Ga~G~~~a~~L~~~G~--~V~l~-~~~~~--~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi   91 (318)
T 3hwr_A           19 GMKVAIMGA-GAVGCYYGGMLARAGH--EVILI-ARPQH--VQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLVL   91 (318)
T ss_dssp             -CEEEEESC-SHHHHHHHHHHHHTTC--EEEEE-CCHHH--HHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEEE
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCC--eEEEE-EcHhH--HHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEEE
Confidence            469999999 9999999999999999  99999 65321  11111110     0001100 1112454 4468999999


Q ss_pred             EcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 028437          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (209)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~  149 (209)
                      ++....                .++++++.+..+. ++..++.++|..+
T Consensus        92 lavk~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~  124 (318)
T 3hwr_A           92 FCVKST----------------DTQSAALAMKPALAKSALVLSLQNGVE  124 (318)
T ss_dssp             ECCCGG----------------GHHHHHHHHTTTSCTTCEEEEECSSSS
T ss_pred             EEcccc----------------cHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence            995221                1255566776654 6778888899987

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.09  E-value=1.1e-05  Score=68.16  Aligned_cols=96  Identities=22%  Similarity=0.291  Sum_probs=62.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec--CCchhHHHhhcCCCC----C---cceeEeecCC--chhhhcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINT----R---SEVAGYMGND--QLGQALEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~--~~~~~~~~dl~~~~~----~---~~v~~~~~~~--d~~~a~~~a   97 (209)
                      |||+|+|+ |.+|..++..|.+.|+  +|+++|+  ++.  ....+.....    .   ..+..   ++  +++++++++
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~   72 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTE--ILKSISAGREHPRLGVKLNGVEI---FWPEQLEKCLENA   72 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHH--HHHHHHTTCCBTTTTBCCCSEEE---ECGGGHHHHHTTC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEEccCCHH--HHHHHHHhCcCcccCccccceEE---ecHHhHHHHHhcC
Confidence            58999999 9999999999999998  9999999  542  2222322211    0   01122   23  566778999


Q ss_pred             CEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 028437           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus        98 D~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~  148 (209)
                      |+||++....                .+.++++.+....++..++.++|..
T Consensus        73 D~vi~~v~~~----------------~~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           73 EVVLLGVSTD----------------GVLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             SEEEECSCGG----------------GHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             CEEEEcCChH----------------HHHHHHHHHhcCCCCCEEEEEcCcC
Confidence            9999996321                1233444454423566777777765

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.08  E-value=8.3e-06  Score=67.23  Aligned_cols=98  Identities=19%  Similarity=0.218  Sum_probs=63.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCC-cceeE-eecCCchhhhcCCCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR-SEVAG-YMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~-~~v~~-~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      |||+|+|+ |.+|..++..|.+.|+  +|+++|+++....  ++...... ..+.. .. .++ .++++++|+||++...
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~--~l~~~~~~~~~~~~~~~-~~~-~~~~~~~d~vi~~v~~   73 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYC--SVNLVETDGSIFNESLT-AND-PDFLATSDLLLVTLKA   73 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEE--EEEEECTTSCEEEEEEE-ESC-HHHHHTCSEEEECSCG
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCcccee--eEEEEcCCCceeeeeee-ecC-ccccCCCCEEEEEecH
Confidence            58999999 9999999999999999  9999999753111  12111100 00111 11 123 4677899999999632


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~  149 (209)
                      .        +        +.++++.+..+. ++..++.++|..+
T Consensus        74 ~--------~--------~~~v~~~l~~~l~~~~~vv~~~~g~~  101 (291)
T 1ks9_A           74 W--------Q--------VSDAVKSLASTLPVTTPILLIHNGMG  101 (291)
T ss_dssp             G--------G--------HHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred             H--------h--------HHHHHHHHHhhCCCCCEEEEecCCCC
Confidence            2        0        244556666554 5667777788765

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.08  E-value=1.3e-05  Score=66.16  Aligned_cols=92  Identities=13%  Similarity=0.097  Sum_probs=58.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      ||||+|+|+ |.+|..++..|.. |+  +|+++|+++....  .+.....    ...   + ++++++++|+||++...+
T Consensus         1 M~~i~iiG~-G~~G~~~a~~l~~-g~--~V~~~~~~~~~~~--~~~~~g~----~~~---~-~~~~~~~~D~vi~~v~~~   66 (289)
T 2cvz_A            1 MEKVAFIGL-GAMGYPMAGHLAR-RF--PTLVWNRTFEKAL--RHQEEFG----SEA---V-PLERVAEARVIFTCLPTT   66 (289)
T ss_dssp             -CCEEEECC-STTHHHHHHHHHT-TS--CEEEECSSTHHHH--HHHHHHC----CEE---C-CGGGGGGCSEEEECCSSH
T ss_pred             CCeEEEEcc-cHHHHHHHHHHhC-CC--eEEEEeCCHHHHH--HHHHCCC----ccc---C-HHHHHhCCCEEEEeCCCh
Confidence            368999999 9999999999999 98  9999999753221  1221111    111   1 456788999999996322


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~  148 (209)
                                     ..+.++++.+.+.. ++..++..||..
T Consensus        67 ---------------~~~~~v~~~l~~~l~~~~~vv~~s~~~   93 (289)
T 2cvz_A           67 ---------------REVYEVAEALYPYLREGTYWVDATSGE   93 (289)
T ss_dssp             ---------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred             ---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                           11233445554433 566666667653

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=98.07  E-value=9.3e-06  Score=66.98  Aligned_cols=112  Identities=13%  Similarity=0.195  Sum_probs=67.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CCchhhhc------CC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---NDQLGQAL------ED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~------~~   96 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.|++...  ....++..     .+..+. +   .++.++++      ..
T Consensus        31 k~vlVTGas~GIG~aia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~-----~~~~~~~Dl~~~~~v~~~~~~~~~~~~  103 (281)
T 3ppi_A           31 ASAIVSGGAGGLGEATVRRLHADGL--GVVIADLAAEKGKALADELGN-----RAEFVSTNVTSEDSVLAAIEAANQLGR  103 (281)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHTTSSE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCC-----ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            4789999999999999999999999  99999997521  12223321     111111 0   11222222      36


Q ss_pred             CCEEEEc-CCCCCCC--------CCC---hhHHHHHHHHHHHHHHHHHHhh---------CCCeEEEEecCC
Q 028437           97 SDVVIIP-AGVPRKP--------GMT---RDDLFNINAGIVKDLCSAIAKY---------CPNAIVNMISNP  147 (209)
Q Consensus        97 aD~Vi~~-ag~~~~~--------g~~---r~~~~~~N~~~~~~i~~~i~~~---------~p~~~viv~snP  147 (209)
                      .|++|++ +|.....        ..+   ....+..|+.....+.+.+...         ...+.+|++|..
T Consensus       104 id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~  175 (281)
T 3ppi_A          104 LRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASI  175 (281)
T ss_dssp             EEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCG
T ss_pred             CCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecc
Confidence            7999999 5543211        112   2445667776666666555432         235678888654

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=98.07  E-value=1e-05  Score=68.40  Aligned_cols=70  Identities=16%  Similarity=0.228  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      .+|||+|||+ |.+|..++..|.+.|+ .+|+++|+++.......+....    +..   .+++++++++||+||++..
T Consensus        23 ~~~~I~iIG~-G~mG~~~A~~L~~~G~-~~V~~~dr~~~~~~~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~vp   92 (312)
T 3qsg_A           23 NAMKLGFIGF-GEAASAIASGLRQAGA-IDMAAYDAASAESWRPRAEELG----VSC---KASVAEVAGECDVIFSLVT   92 (312)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHHSC-CEEEEECSSCHHHHHHHHHHTT----CEE---CSCHHHHHHHCSEEEECSC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC-CeEEEEcCCCCHHHHHHHHHCC----CEE---eCCHHHHHhcCCEEEEecC
Confidence            4579999999 9999999999999886 5899999963111222222221    111   2466788999999999964

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.07  E-value=1.1e-05  Score=67.17  Aligned_cols=65  Identities=23%  Similarity=0.244  Sum_probs=48.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |||+|+|+ |.+|..++..|...|+  +|.++|+++..  ...+....    +..   ..+++++++++|+||++..
T Consensus         6 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~g----~~~---~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEA--IADVIAAG----AET---ASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTT----CEE---CSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhCCCEEEEECC
Confidence            69999998 9999999999999998  99999997532  22222221    111   2466788889999999964

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=98.06  E-value=2.6e-05  Score=63.89  Aligned_cols=115  Identities=18%  Similarity=0.232  Sum_probs=73.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-----hhHHHhhcCCCCCcceeEee----cCCchhhhc-----
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-----PGVAADVGHINTRSEVAGYM----GNDQLGQAL-----   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-----~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-----   94 (209)
                      +.++||||+|.+|.+++..|++.|.  +|++.++...     .....++....  .++..+.    ..++.++.+     
T Consensus        12 k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~   87 (262)
T 3ksu_A           12 KVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFAEK   87 (262)
T ss_dssp             CEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999998  9999887431     11223333322  1122111    111222333     


Q ss_pred             --CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437           95 --EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus        95 --~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                        ...|++|++||......   .+   ....+..|+.....+.+.+.++- +.+.++++|..
T Consensus        88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~  149 (262)
T 3ksu_A           88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATS  149 (262)
T ss_dssp             HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEech
Confidence              37899999999754221   12   23456789988888888887653 45677777653

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=98.05  E-value=9e-06  Score=67.37  Aligned_cols=111  Identities=19%  Similarity=0.184  Sum_probs=66.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEee-cCC---chh-------hhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYM-GND---QLG-------QALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~-~~~---d~~-------~a~~   95 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.|++....  ...++..     .+..+. +-+   +.+       +.+.
T Consensus         6 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (281)
T 3zv4_A            6 EVALITGGASGLGRALVDRFVAEGA--RVAVLDKSAERLRELEVAHGG-----NAVGVVGDVRSLQDQKRAAERCLAAFG   78 (281)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTBT-----TEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHcCC-----cEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999998  999999974211  1111111     111111 111   122       2234


Q ss_pred             CCCEEEEcCCCCCCCC-------CC----hhHHHHHHHHHHHHHHHHHHhhC--CCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG-------MT----RDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g-------~~----r~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~sn  146 (209)
                      ..|++|++||......       ..    ....+..|+.....+.+.+.++-  ..+.+|+++.
T Consensus        79 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS  142 (281)
T 3zv4_A           79 KIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTIS  142 (281)
T ss_dssp             CCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             CCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            7799999999743211       11    22345677766666655554321  1356777754

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=98.05  E-value=2.6e-05  Score=65.40  Aligned_cols=77  Identities=17%  Similarity=0.334  Sum_probs=55.6

Q ss_pred             CCeEEEEc-CCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           28 DRKVAVLG-AAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        28 ~~kI~IiG-asG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ++||+|+| + |.+|..++..|...|+  +|.++|+++..                      +..+++++||+||+++..
T Consensus        21 ~~~I~iIGg~-G~mG~~la~~l~~~G~--~V~~~~~~~~~----------------------~~~~~~~~aDvVilavp~   75 (298)
T 2pv7_A           21 IHKIVIVGGY-GKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVSVPI   75 (298)
T ss_dssp             CCCEEEETTT-SHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEECSCG
T ss_pred             CCEEEEEcCC-CHHHHHHHHHHHhCCC--eEEEEECCccc----------------------CHHHHhcCCCEEEEeCCH
Confidence            35899999 6 9999999999999998  99999986420                      235778899999998632


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEec
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~s  145 (209)
                      .                .+.++++.+..+. ++..++.++
T Consensus        76 ~----------------~~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           76 N----------------LTLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             G----------------GHHHHHHHHGGGCCTTSEEEECC
T ss_pred             H----------------HHHHHHHHHHhhcCCCcEEEECC
Confidence            1                1345556665544 566555443

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.05  E-value=1.6e-05  Score=59.78  Aligned_cols=102  Identities=11%  Similarity=0.035  Sum_probs=60.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC-chh-HHHhhcCCCCCcceeE-eecCCchhhh-cCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPG-VAADVGHINTRSEVAG-YMGNDQLGQA-LEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~-~~~-~~~dl~~~~~~~~v~~-~~~~~d~~~a-~~~aD~Vi~~a  104 (209)
                      ++|+|+|+ |.+|+.++..|...|+  +|+++|+++ ... ...+....... .+.. ......++++ ++++|.||.+.
T Consensus         4 ~~vlI~G~-G~vG~~la~~L~~~g~--~V~vid~~~~~~~~~~~~~~~~~~~-~i~gd~~~~~~l~~a~i~~ad~vi~~~   79 (153)
T 1id1_A            4 DHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDNAD-VIPGDSNDSSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTTCE-EEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred             CcEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCChHHHHHHHHhhcCCCe-EEEcCCCCHHHHHHcChhhCCEEEEec
Confidence            58999998 9999999999999998  999999974 111 11111111111 0110 0001124444 88999999985


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEE-ecCCCC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVN  149 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv-~snP~~  149 (209)
                      +.           -..|.    .++..+++.+|+.+++. +.+|..
T Consensus        80 ~~-----------d~~n~----~~~~~a~~~~~~~~ii~~~~~~~~  110 (153)
T 1id1_A           80 DN-----------DADNA----FVVLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             SC-----------HHHHH----HHHHHHHHHTSSSCEEEECSSGGG
T ss_pred             CC-----------hHHHH----HHHHHHHHHCCCCEEEEEECCHHH
Confidence            32           13343    34455556667665554 455544

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=98.05  E-value=2.1e-05  Score=65.30  Aligned_cols=95  Identities=16%  Similarity=0.197  Sum_probs=59.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      +|||+|+|+ |.+|..++..|...|+..+|+++|+++...  ..+.......  ..   +++++++++++|+||++... 
T Consensus         6 ~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~--~~~~~~g~~~--~~---~~~~~~~~~~aDvVilavp~-   76 (290)
T 3b1f_A            6 EKTIYIAGL-GLIGASLALGIKRDHPHYKIVGYNRSDRSR--DIALERGIVD--EA---TADFKVFAALADVIILAVPI-   76 (290)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSSHHHH--HHHHHTTSCS--EE---ESCTTTTGGGCSEEEECSCH-
T ss_pred             cceEEEEee-CHHHHHHHHHHHhCCCCcEEEEEcCCHHHH--HHHHHcCCcc--cc---cCCHHHhhcCCCEEEEcCCH-
Confidence            479999998 999999999998874222999999975321  1222111100  11   23556778999999999631 


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhh-C-CCeEEEEecC
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKY-C-PNAIVNMISN  146 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~-~-p~~~viv~sn  146 (209)
                                     ....++++.+..+ . ++..++.++|
T Consensus        77 ---------------~~~~~v~~~l~~~~l~~~~ivi~~~~  102 (290)
T 3b1f_A           77 ---------------KKTIDFIKILADLDLKEDVIITDAGS  102 (290)
T ss_dssp             ---------------HHHHHHHHHHHTSCCCTTCEEECCCS
T ss_pred             ---------------HHHHHHHHHHHhcCCCCCCEEEECCC
Confidence                           1124555666654 3 5565554554

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=98.04  E-value=1.4e-05  Score=67.70  Aligned_cols=66  Identities=21%  Similarity=0.187  Sum_probs=48.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEecCCc-----hhHHHhhcCCCCCcceeEeecCC-chhhhcCCCCEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANT-----PGVAADVGHINTRSEVAGYMGND-QLGQALEDSDVV  100 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g-~~~ev~l~D~~~~-----~~~~~dl~~~~~~~~v~~~~~~~-d~~~a~~~aD~V  100 (209)
                      +|||+|+|+ |.+|..++..|++.| +  +|+++|+++.     ......+.....      .   + ++++++++||+|
T Consensus        24 ~m~IgvIG~-G~mG~~lA~~L~~~G~~--~V~~~dr~~~~~~~~~~~~~~~~~~g~------~---~~s~~e~~~~aDvV   91 (317)
T 4ezb_A           24 MTTIAFIGF-GEAAQSIAGGLGGRNAA--RLAAYDLRFNDPAASGALRARAAELGV------E---PLDDVAGIACADVV   91 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCS--EEEEECGGGGCTTTHHHHHHHHHHTTC------E---EESSGGGGGGCSEE
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHcCCC--eEEEEeCCCccccchHHHHHHHHHCCC------C---CCCHHHHHhcCCEE
Confidence            479999998 999999999999999 8  9999999741     112222222221      1   2 457889999999


Q ss_pred             EEcCC
Q 028437          101 IIPAG  105 (209)
Q Consensus       101 i~~ag  105 (209)
                      |++..
T Consensus        92 i~avp   96 (317)
T 4ezb_A           92 LSLVV   96 (317)
T ss_dssp             EECCC
T ss_pred             EEecC
Confidence            99964

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=98.03  E-value=3.8e-05  Score=68.88  Aligned_cols=99  Identities=16%  Similarity=0.213  Sum_probs=63.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCC-CCcceeEeecCCchhhhcC---CCCEEEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-TRSEVAGYMGNDQLGQALE---DSDVVII  102 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~-~~~~v~~~~~~~d~~~a~~---~aD~Vi~  102 (209)
                      .+|||+|+|. |.+|.+++..|+..|+  +|.++|+++..  ..++.... ....+..   +.+++++++   ++|+||+
T Consensus         3 ~~~kIgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g~~g~~i~~---~~s~~e~v~~l~~aDvVil   74 (484)
T 4gwg_A            3 AQADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVVG---AQSLKEMVSKLKKPRRIIL   74 (484)
T ss_dssp             CCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEE---CSSHHHHHHTBCSSCEEEE
T ss_pred             CCCEEEEECh-hHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhcccCCCceec---cCCHHHHHhhccCCCEEEE
Confidence            4579999999 9999999999999999  99999997632  22222211 0112221   235556554   6999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~  148 (209)
                      +...+               +.++++++.+...- ++..+|..||..
T Consensus        75 ~Vp~~---------------~~v~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           75 LVKAG---------------QAVDDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             CSCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             ecCCh---------------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence            86332               12334445555554 556666666653

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=98.02  E-value=5.4e-06  Score=67.61  Aligned_cols=116  Identities=16%  Similarity=0.113  Sum_probs=70.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh---CCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-cCC---chhhhc-----
Q 028437           29 RKVAVLGAAGGIGQPLALLMKL---NPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-GND---QLGQAL-----   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~---~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~~---d~~~a~-----   94 (209)
                      ++++||||+|.+|.+++..|++   .|.  +|++.|+++..  ....++........+..+. +-+   +.++++     
T Consensus         7 k~~lVTGas~gIG~~ia~~l~~~~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (259)
T 1oaa_A            7 AVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cEEEEeCCCChHHHHHHHHHHHhhcCCC--eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence            4799999999999999999999   898  99999997521  1222332110001111111 111   122222     


Q ss_pred             ----CCCC--EEEEcCCCCCCCC------CC---hhHHHHHHHHHHHHHHHHHHhhC-----CCeEEEEecC
Q 028437           95 ----EDSD--VVIIPAGVPRKPG------MT---RDDLFNINAGIVKDLCSAIAKYC-----PNAIVNMISN  146 (209)
Q Consensus        95 ----~~aD--~Vi~~ag~~~~~g------~~---r~~~~~~N~~~~~~i~~~i~~~~-----p~~~viv~sn  146 (209)
                          ...|  ++|++||.....+      .+   ....+..|+.....+.+.+.+.-     ..+.+|++|.
T Consensus        85 ~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS  156 (259)
T 1oaa_A           85 LPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISS  156 (259)
T ss_dssp             SCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECC
T ss_pred             ccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcC
Confidence                1457  9999999753211      22   23457788888888888776543     2367888864

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.02  E-value=1.4e-05  Score=66.27  Aligned_cols=65  Identities=17%  Similarity=0.250  Sum_probs=47.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ||||+|+|+ |.+|..++..|...|+  +|.++| ++....  .+.....    .   ...+++++++++|+||++..
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~-~~~~~~--~~~~~g~----~---~~~~~~~~~~~~D~vi~~vp   67 (295)
T 1yb4_A            3 AMKLGFIGL-GIMGSPMAINLARAGH--QLHVTT-IGPVAD--ELLSLGA----V---NVETARQVTEFADIIFIMVP   67 (295)
T ss_dssp             -CEEEECCC-STTHHHHHHHHHHTTC--EEEECC-SSCCCH--HHHTTTC----B---CCSSHHHHHHTCSEEEECCS
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEEc-CHHHHH--HHHHcCC----c---ccCCHHHHHhcCCEEEEECC
Confidence            479999998 9999999999999998  999999 653221  2222211    1   12356788899999999863

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=98.02  E-value=2.6e-05  Score=69.91  Aligned_cols=99  Identities=12%  Similarity=0.173  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCC---CCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~---aD~Vi~~a  104 (209)
                      ++||+|+|+ |.+|.+++..|++.|+  +|.++|+++..  ..++........+..   +.++++++++   +|+||++.
T Consensus        15 ~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~~r~~~~--~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVil~V   86 (480)
T 2zyd_A           15 KQQIGVVGM-AVMGRNLALNIESRGY--TVSIFNRSREK--TEEVIAENPGKKLVP---YYTVKEFVESLETPRRILLMV   86 (480)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHH--HHHHHHHSTTSCEEE---CSSHHHHHHTBCSSCEEEECS
T ss_pred             CCeEEEEcc-HHHHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHhhCCCCCeEE---eCCHHHHHhCCCCCCEEEEEC
Confidence            358999999 9999999999999999  99999997532  222221100001222   3466777766   99999996


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~  149 (209)
                      ..+.               .++++++.+.... |+..+|..+|...
T Consensus        87 p~~~---------------~v~~vl~~l~~~l~~g~iIId~s~g~~  117 (480)
T 2zyd_A           87 KAGA---------------GTDAAIDSLKPYLDKGDIIIDGGNTFF  117 (480)
T ss_dssp             CSSS---------------HHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             CCHH---------------HHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence            3321               1234445555554 5667777787653

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=98.02  E-value=0.0001  Score=59.42  Aligned_cols=113  Identities=18%  Similarity=0.187  Sum_probs=59.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCC-C---CcceeEe---ecCCchhhhcCCCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-T---RSEVAGY---MGNDQLGQALEDSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~-~---~~~v~~~---~~~~d~~~a~~~aD~Vi  101 (209)
                      ++++||||+|++|.+++..|++ |.  .|+++++++...  .++.+.. .   ..++...   ....+..+.+...|++|
T Consensus         6 k~vlITGas~gIG~~~a~~l~~-g~--~v~~~~r~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv   80 (245)
T 3e9n_A            6 KIAVVTGATGGMGIEIVKDLSR-DH--IVYALGRNPEHL--AALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLV   80 (245)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTT-TS--EEEEEESCHHHH--HHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHhC-CC--eEEEEeCCHHHH--HHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEEE
Confidence            5799999999999999999987 76  899999974211  1111111 0   0000000   00011122345789999


Q ss_pred             EcCCCCCCCC---CC---hhHHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCCC
Q 028437          102 IPAGVPRKPG---MT---RDDLFNINAGIVK----DLCSAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus       102 ~~ag~~~~~g---~~---r~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~snP~  148 (209)
                      ++||......   .+   ....+..|+....    .+.+.+++..  +.+|++|...
T Consensus        81 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~~  135 (245)
T 3e9n_A           81 HAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSGA  135 (245)
T ss_dssp             ECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC---
T ss_pred             ECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCcc
Confidence            9999754221   11   2234566776644    4444444432  6777776543

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=98.01  E-value=1.4e-05  Score=64.70  Aligned_cols=117  Identities=16%  Similarity=0.106  Sum_probs=71.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec-CCc--hhHHHhhcCCCCCcceeEee-cCCc---hhhhcC----
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE----   95 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~-~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~----   95 (209)
                      +.++++||||+|.+|.+++..|++.|.  +|++.+. +..  .....++.....  .+..+. +.++   .++.++    
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~   81 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNGG--SAFSIGANLESLHGVEALYSSLDN   81 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCSHHHHHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhcCC--ceEEEecCcCCHHHHHHHHHHHHH
Confidence            445899999999999999999999998  8888644 332  112223322211  111111 0111   122221    


Q ss_pred             ---------CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437           96 ---------DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus        96 ---------~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                               ..|++|++||......   .+   ....+..|+.....+.+.+.+.- +.++++++|..
T Consensus        82 ~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~  149 (255)
T 3icc_A           82 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSA  149 (255)
T ss_dssp             HHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCG
T ss_pred             HhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCCh
Confidence                     2899999999753221   12   23456788888888888876553 34678888754

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=98.00  E-value=2e-05  Score=70.59  Aligned_cols=116  Identities=15%  Similarity=0.166  Sum_probs=74.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-----hhHHHhhcCCCCCcceeEee-c---CCchhhhcCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-----PGVAADVGHINTRSEVAGYM-G---NDQLGQALED   96 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-----~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~~~   96 (209)
                      .+.++|+||||+|++|..++..|+++|. ..|++++++..     .....++....  ..+..+. +   .+++++++++
T Consensus       224 ~~~~~vLITGgtGgIG~~la~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~g--~~v~~~~~Dv~d~~~v~~~~~~  300 (486)
T 2fr1_A          224 KPTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELLGG  300 (486)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCC-CEEEEEcCCCCCcHHHHHHHHHHHhcC--CEEEEEEeCCCCHHHHHHHHHH
Confidence            3456899999999999999999999987 24999998642     11122333221  1222211 1   1234445555


Q ss_pred             C------CEEEEcCCCCCCCC---CCh---hHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           97 S------DVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        97 a------D~Vi~~ag~~~~~g---~~r---~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +      |.|||+||......   .+.   ...+..|+....++.+.+.+. +...++++|
T Consensus       301 i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~~~~~V~~S  360 (486)
T 2fr1_A          301 IGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFS  360 (486)
T ss_dssp             SCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEE
T ss_pred             HHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC-CCCEEEEEc
Confidence            4      99999999764321   222   234567999999999988765 445566665

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.00  E-value=1.7e-05  Score=67.45  Aligned_cols=98  Identities=18%  Similarity=0.249  Sum_probs=63.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC-----CcceeE-eecCCchhhhcCCCCEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----RSEVAG-YMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~-----~~~v~~-~~~~~d~~~a~~~aD~Vi  101 (209)
                      +|||+|+|+ |.+|..++..|.+.|+  +|.++|+++   ....+.....     ...... +..+++.+ +++++|+||
T Consensus         3 ~mkI~IiGa-G~~G~~~a~~L~~~g~--~V~~~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~D~Vi   75 (335)
T 3ghy_A            3 LTRICIVGA-GAVGGYLGARLALAGE--AINVLARGA---TLQALQTAGLRLTEDGATHTLPVRATHDAA-ALGEQDVVI   75 (335)
T ss_dssp             CCCEEEESC-CHHHHHHHHHHHHTTC--CEEEECCHH---HHHHHHHTCEEEEETTEEEEECCEEESCHH-HHCCCSEEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEEChH---HHHHHHHCCCEEecCCCeEEEeeeEECCHH-HcCCCCEEE
Confidence            479999999 9999999999999998  999999852   1112221110     000000 11124554 468999999


Q ss_pred             EcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 028437          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (209)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~  148 (209)
                      ++...                ..+.++++.+..+- ++..++.+.|..
T Consensus        76 lavk~----------------~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           76 VAVKA----------------PALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             ECCCH----------------HHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             EeCCc----------------hhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            98521                12345566666553 677888888984

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.98  E-value=1e-05  Score=65.80  Aligned_cols=68  Identities=12%  Similarity=0.290  Sum_probs=48.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC--ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~--~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +|||+|+|+ |.+|..++..|.+.|+  ..+|.++|+++..  ..++....   .+..   ..+.+++++++|+||++.
T Consensus         2 ~~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~--~~~~~~~~---g~~~---~~~~~e~~~~aDvVilav   71 (247)
T 3gt0_A            2 DKQIGFIGC-GNMGMAMIGGMINKNIVSSNQIICSDLNTAN--LKNASEKY---GLTT---TTDNNEVAKNADILILSI   71 (247)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTSSCGGGEEEECSCHHH--HHHHHHHH---CCEE---CSCHHHHHHHCSEEEECS
T ss_pred             CCeEEEECc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCHHH--HHHHHHHh---CCEE---eCChHHHHHhCCEEEEEe
Confidence            369999999 9999999999999986  3489999997532  22222110   0111   245678889999999997

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.98  E-value=2e-05  Score=68.59  Aligned_cols=73  Identities=21%  Similarity=0.199  Sum_probs=47.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEe---cCCchhHHHh-hcCCC------C-Cc---ceeE-e-ecCCch
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYD---IANTPGVAAD-VGHIN------T-RS---EVAG-Y-MGNDQL   90 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~-~g~~~ev~l~D---~~~~~~~~~d-l~~~~------~-~~---~v~~-~-~~~~d~   90 (209)
                      +|||+|+|+ |.+|..++..|++ .|+  +|.++|   +++.  .... +....      . +.   .... . ..++++
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~--~V~~~~~~~r~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGV--EVRVLTLFADEAE--RWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDP   76 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTE--EEEEECCSTTHHH--HHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCH
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCC--EEEEEeCCCCcHH--HHHHHHhhccceeeeecCCCccceeeccceEEeCCH
Confidence            479999999 9999999999988 498  999999   5321  1222 12111      0 00   0000 0 023467


Q ss_pred             hhhcCCCCEEEEcCC
Q 028437           91 GQALEDSDVVIIPAG  105 (209)
Q Consensus        91 ~~a~~~aD~Vi~~ag  105 (209)
                      +++++++|+||++..
T Consensus        77 ~~a~~~aD~Vilav~   91 (404)
T 3c7a_A           77 EIAISGADVVILTVP   91 (404)
T ss_dssp             HHHHTTCSEEEECSC
T ss_pred             HHHhCCCCEEEEeCc
Confidence            788999999999963

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=97.96  E-value=4.2e-05  Score=69.03  Aligned_cols=118  Identities=19%  Similarity=0.182  Sum_probs=74.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-----hhHHHhhcCCCCCcceeEee-cC---CchhhhcCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-----PGVAADVGHINTRSEVAGYM-GN---DQLGQALED   96 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-----~~~~~dl~~~~~~~~v~~~~-~~---~d~~~a~~~   96 (209)
                      .+..+|+||||+|++|..++..|++.|. ..|++++++..     .....++....  .++..+. +.   +++++++++
T Consensus       257 ~~~~~vLITGgtGgIG~~lA~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~g--~~v~~~~~Dvtd~~~v~~~~~~  333 (511)
T 2z5l_A          257 QPSGTVLITGGMGAIGRRLARRLAAEGA-ERLVLTSRRGPEAPGAAELAEELRGHG--CEVVHAACDVAERDALAALVTA  333 (511)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC-SEEEEEESSGGGSTTHHHHHHHHHTTT--CEEEEEECCSSCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCC-cEEEEEecCCcccHHHHHHHHHHHhcC--CEEEEEEeCCCCHHHHHHHHhc
Confidence            3446899999999999999999999987 25888988642     11223343322  1222221 11   234445544


Q ss_pred             --CCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           97 --SDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        97 --aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                        .|+|||+||......   .+   ....+..|+....++.+.+.+..+...||++|.
T Consensus       334 ~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS  391 (511)
T 2z5l_A          334 YPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSS  391 (511)
T ss_dssp             SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEE
T ss_pred             CCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence              899999999764221   22   233567789898898887765423345666653

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.96  E-value=0.0002  Score=58.73  Aligned_cols=116  Identities=15%  Similarity=0.201  Sum_probs=71.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCccee--EeecCCchhhhc--CCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA--GYMGNDQLGQAL--EDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~--~~~~~~d~~~a~--~~aD~Vi~~a  104 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|++..+.....+..........  ++....+.++.+  ...|++|+.|
T Consensus        10 KvalVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVNNA   87 (247)
T 4hp8_A           10 RKALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILVNNA   87 (247)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEECC
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEECC
Confidence            4678999999999999999999999  999999975433223333222111000  011111222222  3579999999


Q ss_pred             CCCCCCC---CC---hhHHHHHHHHHHH----HHHHHHHhhCCCeEEEEecC
Q 028437          105 GVPRKPG---MT---RDDLFNINAGIVK----DLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       105 g~~~~~g---~~---r~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~sn  146 (209)
                      |......   .+   ....+..|+...-    ..++.|.+....+.||++|.
T Consensus        88 Gi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS  139 (247)
T 4hp8_A           88 GIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIAS  139 (247)
T ss_dssp             CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            9764221   22   3345667766544    45555665566688888864

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=97.95  E-value=6.3e-05  Score=63.64  Aligned_cols=114  Identities=22%  Similarity=0.283  Sum_probs=68.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC---------Cc--hhHHHhhcCCCCCcceeEeecCCchhh-----
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA---------NT--PGVAADVGHINTRSEVAGYMGNDQLGQ-----   92 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~---------~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~-----   92 (209)
                      ++++||||+|.+|..++..|++.|.  +|++.|+.         ..  .....++...... .+.++....+.++     
T Consensus        10 k~~lVTGas~GIG~~~a~~La~~Ga--~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~-~~~D~~~~~~~~~~~~~~   86 (319)
T 1gz6_A           10 RVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK-AVANYDSVEAGEKLVKTA   86 (319)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCE-EEEECCCGGGHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCe-EEEeCCCHHHHHHHHHHH
Confidence            5799999999999999999999998  99998763         11  1112233221100 1111111112222     


Q ss_pred             --hcCCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecC
Q 028437           93 --ALEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (209)
Q Consensus        93 --a~~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~sn  146 (209)
                        .+...|++|+.||......   .+   ....+..|+.....+.+.+    ++. ..++||++|.
T Consensus        87 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~grIV~vsS  151 (319)
T 1gz6_A           87 LDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ-NYGRIIMTAS  151 (319)
T ss_dssp             HHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECC
Confidence              2457899999999764321   22   2345677877766555554    433 3567888764

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.95  E-value=4.9e-05  Score=68.38  Aligned_cols=98  Identities=13%  Similarity=0.137  Sum_probs=64.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcC-CCCCcceeEeecCCchhhhcCC---CCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-INTRSEVAGYMGNDQLGQALED---SDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~-~~~~~~v~~~~~~~d~~~a~~~---aD~Vi~~a  104 (209)
                      .+|+|+|+ |.+|.+++..|++.|+  +|.++|+++.+  ..++.. ......+.   .+.++++++++   +|+||++.
T Consensus        11 ~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~~~~~gi~---~~~s~~e~v~~l~~aDvVil~V   82 (497)
T 2p4q_A           11 ADFGLIGL-AVMGQNLILNAADHGF--TVCAYNRTQSK--VDHFLANEAKGKSII---GATSIEDFISKLKRPRKVMLLV   82 (497)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSHH--HHHHHHTTTTTSSEE---CCSSHHHHHHTSCSSCEEEECC
T ss_pred             CCEEEEee-HHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHcccccCCCeE---EeCCHHHHHhcCCCCCEEEEEc
Confidence            58999999 9999999999999999  99999997632  222222 10001122   13466777766   99999996


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~  149 (209)
                      ..+               ..++++++.+.... |+..+|..||...
T Consensus        83 p~~---------------~~v~~vl~~l~~~l~~g~iIId~s~~~~  113 (497)
T 2p4q_A           83 KAG---------------APVDALINQIVPLLEKGDIIIDGGNSHF  113 (497)
T ss_dssp             CSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             CCh---------------HHHHHHHHHHHHhCCCCCEEEECCCCCh
Confidence            322               12344555665554 4566776776543

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.95  E-value=4.2e-05  Score=68.46  Aligned_cols=98  Identities=15%  Similarity=0.183  Sum_probs=61.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcC-CCCCcceeEeecCCchhhhc---CCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-INTRSEVAGYMGNDQLGQAL---EDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~-~~~~~~v~~~~~~~d~~~a~---~~aD~Vi~~a  104 (209)
                      |||+|+|+ |.+|..++..|.+.|+  +|.++|+++..  ..++.. ......+..   +.++++++   +++|+||++.
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~~~g~gi~~---~~~~~e~v~~l~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVLG---AHSLEEMVSKLKKPRRIILLV   74 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEE---CSSHHHHHHHBCSSCEEEECS
T ss_pred             CeEEEECh-HHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHhccccCCCeEE---eCCHHHHHhhccCCCEEEEeC
Confidence            68999999 9999999999999999  99999997532  222222 000011222   34566665   5999999986


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~  149 (209)
                      ..+               ..++++++.+.... ++..+|..+|...
T Consensus        75 p~~---------------~~v~~vl~~l~~~l~~g~iII~~s~~~~  105 (482)
T 2pgd_A           75 KAG---------------QAVDNFIEKLVPLLDIGDIIIDGGNSEY  105 (482)
T ss_dssp             CTT---------------HHHHHHHHHHHHHCCTTCEEEECSCCCH
T ss_pred             CCh---------------HHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence            322               11233444454443 4566666666543

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.94  E-value=6e-05  Score=63.30  Aligned_cols=64  Identities=19%  Similarity=0.323  Sum_probs=45.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .||++||- |.+|..++..|++.|+  +|+.||+++.  ...++.+..    ...   .+++.++++++|+||.+.
T Consensus         6 ~kIgfIGL-G~MG~~mA~~L~~~G~--~V~v~dr~~~--~~~~l~~~G----~~~---~~s~~e~~~~~dvvi~~l   69 (297)
T 4gbj_A            6 EKIAFLGL-GNLGTPIAEILLEAGY--ELVVWNRTAS--KAEPLTKLG----ATV---VENAIDAITPGGIVFSVL   69 (297)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEC---------CTTTTTT----CEE---CSSGGGGCCTTCEEEECC
T ss_pred             CcEEEEec-HHHHHHHHHHHHHCCC--eEEEEeCCHH--HHHHHHHcC----CeE---eCCHHHHHhcCCceeeec
Confidence            38999999 9999999999999999  9999999753  223333332    111   245788999999999985

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.94  E-value=2.2e-05  Score=62.58  Aligned_cols=97  Identities=18%  Similarity=0.165  Sum_probs=58.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcC-CCCCcceeE-eecCCchhhh-cCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-INTRSEVAG-YMGNDQLGQA-LEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~-~~~~~~v~~-~~~~~d~~~a-~~~aD~Vi~~ag  105 (209)
                      |||+|+|+ |.+|+.++..|.+.|+  +|+++|+++...  .++.. .... .+.. ......++++ +++||+||.+.+
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~~--~~l~~~~~~~-~i~gd~~~~~~l~~a~i~~ad~vi~~~~   74 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY--GVVIINKDRELC--EEFAKKLKAT-IIHGDGSHKEILRDAEVSKNDVVVILTP   74 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC--CEEEEESCHHHH--HHHHHHSSSE-EEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHH--HHHHHHcCCe-EEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence            68999999 9999999999999999  999999985322  22211 1110 0110 0001123443 789999999853


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ..           ..|.    .++..+++..|...++.-.+
T Consensus        75 ~d-----------~~n~----~~~~~a~~~~~~~~iia~~~  100 (218)
T 3l4b_C           75 RD-----------EVNL----FIAQLVMKDFGVKRVVSLVN  100 (218)
T ss_dssp             CH-----------HHHH----HHHHHHHHTSCCCEEEECCC
T ss_pred             Cc-----------HHHH----HHHHHHHHHcCCCeEEEEEe
Confidence            21           2332    23444455567666555443

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.94  E-value=0.00011  Score=60.44  Aligned_cols=114  Identities=17%  Similarity=0.258  Sum_probs=70.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-c---CCc-------hhhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-G---NDQ-------LGQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~---~~d-------~~~a~~   95 (209)
                      +.++||||++.+|..++..|++.|.  .|+++|+++.  +....++......  +..+. +   .++       ..+.+.
T Consensus         8 KvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~g~~--~~~~~~Dvt~~~~v~~~~~~~~~~~G   83 (254)
T 4fn4_A            8 KVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGMGKE--VLGVKADVSKKKDVEEFVRRTFETYS   83 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCC--EEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCc--EEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4788999999999999999999998  9999999752  2233344332211  11110 0   111       223356


Q ss_pred             CCCEEEEcCCCCCC--C--CCCh---hHHHHHHHHHH----HHHHHHHHhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~--~--g~~r---~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ..|++|+.||....  +  ..+.   ...+..|+...    +.+++.|.+.. .+.||++|.-
T Consensus        84 ~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~  145 (254)
T 4fn4_A           84 RIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTASI  145 (254)
T ss_dssp             CCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEech
Confidence            78999999996432  2  1232   33456666544    55566665543 5778888643

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.94  E-value=1.8e-05  Score=63.21  Aligned_cols=66  Identities=15%  Similarity=0.165  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      .+|||+|+|+ |.+|..++..|...|+  +|.++|+++.  ....+....    +..   . +++++++++|+||++..
T Consensus        27 ~~~~I~iiG~-G~~G~~la~~l~~~g~--~V~~~~r~~~--~~~~~~~~g----~~~---~-~~~~~~~~~DvVi~av~   92 (215)
T 2vns_A           27 EAPKVGILGS-GDFARSLATRLVGSGF--KVVVGSRNPK--RTARLFPSA----AQV---T-FQEEAVSSPEVIFVAVF   92 (215)
T ss_dssp             --CCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSHH--HHHHHSBTT----SEE---E-EHHHHTTSCSEEEECSC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHcC----Cce---e-cHHHHHhCCCEEEECCC
Confidence            4579999997 9999999999999998  9999999742  222333322    111   1 45788899999999864

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.92  E-value=4.4e-05  Score=68.32  Aligned_cols=99  Identities=13%  Similarity=0.147  Sum_probs=61.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH--HHhhcCCCCCcceeEeecCCchhhhcC---CCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~--~~dl~~~~~~~~v~~~~~~~d~~~a~~---~aD~Vi~~  103 (209)
                      |||+|+|+ |.+|..++..|.+.|+  +|.++|+++....  ..+.........+..   +.+++++++   ++|+||++
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~---~~~~~e~v~~l~~aDvVila   75 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKA---FETMEAFAASLKKPRKALIL   75 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEE---CSCHHHHHHHBCSSCEEEEC
T ss_pred             CEEEEECh-HHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcCCCCCCCCeEE---ECCHHHHHhcccCCCEEEEe
Confidence            68999999 9999999999999999  9999999753211  111110000112222   345666665   59999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~  148 (209)
                      ...+               ..++++++.+.... ++..+|..+|..
T Consensus        76 Vp~~---------------~~v~~vl~~l~~~l~~g~iIId~sng~  106 (478)
T 1pgj_A           76 VQAG---------------AATDSTIEQLKKVFEKGDILVDTGNAH  106 (478)
T ss_dssp             CCCS---------------HHHHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred             cCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            6322               11233444554443 566666677664

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.92  E-value=4.7e-05  Score=62.49  Aligned_cols=111  Identities=19%  Similarity=0.190  Sum_probs=67.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee-c---CC-------chhhhcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---ND-------QLGQALEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~-------d~~~a~~~a   97 (209)
                      ++|+||||++.+|..++..|++.|.  +|++.|+++..  ..++.....  ....+. +   .+       ...+.+...
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~--~~~~~~~~~--~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i   76 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD--KVCFIDIDEKR--SADFAKERP--NLFYFHGDVADPLTLKKFVEYAMEKLQRI   76 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHTTCT--TEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhcC--CEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            3799999999999999999999999  99999997521  122222111  011110 0   11       123345688


Q ss_pred             CEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHH----HHHHhhCCCeEEEEecCC
Q 028437           98 DVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        98 D~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~----~~i~~~~p~~~viv~snP  147 (209)
                      |++|+.||......   .+   ....+..|+.....+.    +.+.+.  .+.+|+++.-
T Consensus        77 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~--~G~IInisS~  134 (247)
T 3ged_A           77 DVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN--KGRIINIAST  134 (247)
T ss_dssp             CEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEECCG
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCcEEEEeec
Confidence            99999998754221   22   2344667766555444    444432  4677887643

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.92  E-value=7.5e-05  Score=62.16  Aligned_cols=118  Identities=16%  Similarity=0.198  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCCc--hhHHHhhcCCCCCcceeEee----cCCchhhhc-------
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANT--PGVAADVGHINTRSEVAGYM----GNDQLGQAL-------   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------   94 (209)
                      ++++||||+|.+|..++..|++.|. ...|++.+++..  .....++........+..+.    ..++.++++       
T Consensus        34 k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  113 (287)
T 3rku_A           34 KTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEF  113 (287)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCGGG
T ss_pred             CEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            4799999999999999999998764 228999999742  11222232210011111111    112233333       


Q ss_pred             CCCCEEEEcCCCCCCC----CCC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCC
Q 028437           95 EDSDVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNP  147 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~----g~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~snP  147 (209)
                      ...|++|++||.....    ..+   ....+..|+.....+.+.+    ++. ..+.||++|..
T Consensus       114 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS~  176 (287)
T 3rku_A          114 KDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAK-NSGDIVNLGSI  176 (287)
T ss_dssp             CSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCG
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEECCh
Confidence            3689999999975311    122   2345677877766666665    333 45677777643

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.91  E-value=7e-05  Score=66.90  Aligned_cols=98  Identities=12%  Similarity=0.142  Sum_probs=62.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCC---CCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~---aD~Vi~~a  104 (209)
                      ++||+|+|+ |.+|..++..|.+.|+  +|.++|+++..  ..++........+..   +.++++++++   +|+||++.
T Consensus         5 ~~~IgvIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVilav   76 (474)
T 2iz1_A            5 QANFGVVGM-AVMGKNLALNVESRGY--TVAIYNRTTSK--TEEVFKEHQDKNLVF---TKTLEEFVGSLEKPRRIMLMV   76 (474)
T ss_dssp             TBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHTTTSCEEE---CSSHHHHHHTBCSSCEEEECC
T ss_pred             CCcEEEEee-HHHHHHHHHHHHhCCC--EEEEEcCCHHH--HHHHHHhCcCCCeEE---eCCHHHHHhhccCCCEEEEEc
Confidence            368999999 9999999999999999  99999997532  112221100011222   3466676665   99999996


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~  148 (209)
                      ..+               ..++++++.+.... ++..+|..+|..
T Consensus        77 p~~---------------~~v~~vl~~l~~~l~~g~iiId~s~~~  106 (474)
T 2iz1_A           77 QAG---------------AATDATIKSLLPLLDIGDILIDGGNTH  106 (474)
T ss_dssp             CTT---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             cCc---------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            322               12234445555544 556666666654

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=97.90  E-value=2.6e-05  Score=63.50  Aligned_cols=113  Identities=18%  Similarity=0.179  Sum_probs=66.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhh-------cC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQA-------LE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a-------~~   95 (209)
                      ++++||||+|.+|.+++..|++.|....|++.++++..  ....++..     .+..+.    ..++.+++       +.
T Consensus         3 k~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (254)
T 3kzv_A            3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGD-----RFFYVVGDITEDSVLKQLVNAAVKGHG   77 (254)
T ss_dssp             CEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGG-----GEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCC-----ceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            47899999999999999999987532288889887421  11122211     111111    01122222       34


Q ss_pred             CCCEEEEcCCCCCC--C--CCCh---hHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecCCC
Q 028437           96 DSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDLCSAI----AKYCPNAIVNMISNPV  148 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~--~--g~~r---~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~snP~  148 (209)
                      ..|++|++||....  +  ..+.   ...+..|+.....+.+.+    ++..  +.+|++|...
T Consensus        78 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~  139 (254)
T 3kzv_A           78 KIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDA  139 (254)
T ss_dssp             CCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSC
T ss_pred             CccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCch
Confidence            78999999997432  1  1222   335677776666665555    4432  6788887543

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.89  E-value=4.9e-05  Score=63.95  Aligned_cols=115  Identities=11%  Similarity=0.123  Sum_probs=68.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC----CcceeEeecCCchhhhcCCCCEEEEc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      +|||+|+|+ |.+|..++..|. .|+  +|.++++++..  ...+.....    +........+.+ .++.+++|+||++
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~--~V~~~~r~~~~--~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~~~D~vila   74 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS-LYH--DVTVVTRRQEQ--AAAIQSEGIRLYKGGEEFRADCSAD-TSINSDFDLLVVT   74 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHH--HHHHHHHCEEEEETTEEEEECCEEE-SSCCSCCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-cCC--ceEEEECCHHH--HHHHHhCCceEecCCCeeccccccc-ccccCCCCEEEEE
Confidence            379999999 999999999999 888  99999997421  111211110    000000000001 2456789999998


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~  173 (209)
                      .-..                .+.++++.++...++. ++.+.|-.+    . .+.+.+.  +|.+++++-
T Consensus        75 vK~~----------------~~~~~l~~l~~~~~~~-ivs~~nGi~----~-~e~l~~~--~~~~~vl~g  120 (307)
T 3ego_A           75 VKQH----------------QLQSVFSSLERIGKTN-ILFLQNGMG----H-IHDLKDW--HVGHSIYVG  120 (307)
T ss_dssp             CCGG----------------GHHHHHHHTTSSCCCE-EEECCSSSH----H-HHHHHTC--CCSCEEEEE
T ss_pred             eCHH----------------HHHHHHHHhhcCCCCe-EEEecCCcc----H-HHHHHHh--CCCCcEEEE
Confidence            5221                1244556665554566 777888876    2 2234433  577777543

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=97.88  E-value=1.6e-05  Score=64.85  Aligned_cols=34  Identities=24%  Similarity=0.245  Sum_probs=31.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ++++||||+|.+|.+++..|++.|.  +|++.++++
T Consensus         6 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (260)
T 2qq5_A            6 QVCVVTGASRGIGRGIALQLCKAGA--TVYITGRHL   39 (260)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999999998  999999974

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=97.87  E-value=1.3e-05  Score=68.10  Aligned_cols=115  Identities=15%  Similarity=0.132  Sum_probs=67.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chh---HHHhhcC-CCCCcceeEee-c---CCchhhhcC---
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPG---VAADVGH-INTRSEVAGYM-G---NDQLGQALE---   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~---~~~dl~~-~~~~~~v~~~~-~---~~d~~~a~~---   95 (209)
                      ++|+||||+|.+|.+++..|++.|.  +|++++++.  ...   ....+.. ......+..+. +   .++++++++   
T Consensus         3 k~vlVTGas~GIG~ala~~L~~~G~--~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            3 TVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            4799999999999999999999998  777777642  111   1111110 00001121111 1   122334444   


Q ss_pred             --CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecC
Q 028437           96 --DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (209)
Q Consensus        96 --~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~sn  146 (209)
                        ..|++|++||......   .+   ....+..|+.....+.+.+    ++. ..++||++|.
T Consensus        81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-~~g~IV~isS  142 (327)
T 1jtv_A           81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRR-GSGRVLVTGS  142 (327)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEE
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECC
Confidence              4899999999753211   12   2345677887777777664    333 3567777753

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.86  E-value=0.00014  Score=59.89  Aligned_cols=117  Identities=16%  Similarity=0.172  Sum_probs=71.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCC-----CcceeEeec----CCchhhhcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT-----RSEVAGYMG----NDQLGQALEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~-----~~~v~~~~~----~~d~~~a~~~a   97 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  .....++.....     .+++.....    -+...+.+...
T Consensus        10 KvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   87 (255)
T 4g81_D           10 KTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHV   87 (255)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            4788999999999999999999999  9999999752  222333433211     111111000    01122334578


Q ss_pred             CEEEEcCCCCCCCC---CC---hhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCC
Q 028437           98 DVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        98 D~Vi~~ag~~~~~g---~~---r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      |++|+.||......   .+   ....+..|+..    ++.+++.|.+....+.||++|.-
T Consensus        88 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~  147 (255)
T 4g81_D           88 DILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSL  147 (255)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeeh
Confidence            99999999764222   22   23345667654    45556666555566888888643

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.86  E-value=3.2e-05  Score=64.56  Aligned_cols=100  Identities=16%  Similarity=0.180  Sum_probs=61.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC-----C-CccEEEEEecCCchhHHHhhcC-CCCC-----cc-eeE-eecCCchhh
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLN-----P-LVSRLALYDIANTPGVAADVGH-INTR-----SE-VAG-YMGNDQLGQ   92 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~-----g-~~~ev~l~D~~~~~~~~~dl~~-~~~~-----~~-v~~-~~~~~d~~~   92 (209)
                      ++|||+|+|+ |.+|..++..|.+.     | +  +|+++|+ +.  ....+.+ ....     .. ... ...+++ .+
T Consensus         7 ~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~--~V~~~~r-~~--~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~   79 (317)
T 2qyt_A            7 QPIKIAVFGL-GGVGGYYGAMLALRAAATDGLL--EVSWIAR-GA--HLEAIRAAGGLRVVTPSRDFLARPTCVTDN-PA   79 (317)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE--EEEEECC-HH--HHHHHHHHTSEEEECSSCEEEECCSEEESC-HH
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCccccCCCC--CEEEEEc-HH--HHHHHHhcCCeEEEeCCCCeEEecceEecC-cc
Confidence            4479999999 99999999999988     8 8  9999998 32  2222222 1100     00 000 001123 35


Q ss_pred             hcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 028437           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (209)
Q Consensus        93 a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~  149 (209)
                      +++++|+||++.....                +.++++.+..+- ++..++.++|..+
T Consensus        80 ~~~~~D~vil~vk~~~----------------~~~v~~~i~~~l~~~~~iv~~~nG~~  121 (317)
T 2qyt_A           80 EVGTVDYILFCTKDYD----------------MERGVAEIRPMIGQNTKILPLLNGAD  121 (317)
T ss_dssp             HHCCEEEEEECCSSSC----------------HHHHHHHHGGGEEEEEEEEECSCSSS
T ss_pred             ccCCCCEEEEecCccc----------------HHHHHHHHHhhcCCCCEEEEccCCCC
Confidence            6789999999964321                134445555543 4566777788765

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.85  E-value=7.7e-05  Score=63.99  Aligned_cols=90  Identities=17%  Similarity=0.226  Sum_probs=57.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC----CCCEEEEc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE----DSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~----~aD~Vi~~  103 (209)
                      .+||+|+|+ |.+|..++..|...|+  +|+++|+++....  .......    ..   ..+++++++    ++|+||++
T Consensus         8 ~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~--~a~~~G~----~~---~~~~~e~~~~a~~~aDlVila   75 (341)
T 3ktd_A            8 SRPVCILGL-GLIGGSLLRDLHAANH--SVFGYNRSRSGAK--SAVDEGF----DV---SADLEATLQRAAAEDALIVLA   75 (341)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHH--HHHHTTC----CE---ESCHHHHHHHHHHTTCEEEEC
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHcCC----ee---eCCHHHHHHhcccCCCEEEEe
Confidence            369999998 9999999999999998  9999999753211  1111111    11   124455554    57999998


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ...                ..+.++++.+..+.|+++++.++
T Consensus        76 vP~----------------~~~~~vl~~l~~~~~~~iv~Dv~  101 (341)
T 3ktd_A           76 VPM----------------TAIDSLLDAVHTHAPNNGFTDVV  101 (341)
T ss_dssp             SCH----------------HHHHHHHHHHHHHCTTCCEEECC
T ss_pred             CCH----------------HHHHHHHHHHHccCCCCEEEEcC
Confidence            521                12344445555555666555454

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.85  E-value=2.2e-05  Score=64.09  Aligned_cols=64  Identities=17%  Similarity=0.200  Sum_probs=45.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g-~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||+|+|+ |.+|..++..|.+.| +  +|.++|+++..  ...+... +.  +..   ..+.++++ ++|+||++.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~~--~v~~~~r~~~~--~~~~~~~-~g--~~~---~~~~~~~~-~~D~vi~~v   65 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGGY--RIYIANRGAEK--RERLEKE-LG--VET---SATLPELH-SDDVLILAV   65 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSC--EEEEECSSHHH--HHHHHHH-TC--CEE---ESSCCCCC-TTSEEEECS
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCC--eEEEECCCHHH--HHHHHHh-cC--CEE---eCCHHHHh-cCCEEEEEe
Confidence            58999999 999999999999988 7  99999997532  2222211 01  111   12445677 999999996

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.84  E-value=2.7e-05  Score=63.77  Aligned_cols=113  Identities=18%  Similarity=0.201  Sum_probs=67.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC---CcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT---RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~---~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      -+.++||||++.+|..++..|++.|.  +|++.|+++.....  ......   ..++.....-+.+-+.+...|++|+.|
T Consensus        11 GK~alVTGas~GIG~aia~~la~~Ga--~Vv~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNA   86 (242)
T 4b79_A           11 GQQVLVTGGSSGIGAAIAMQFAELGA--EVVALGLDADGVHA--PRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNA   86 (242)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTSTTS--CCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHhh--hhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECC
Confidence            35899999999999999999999999  99999997521110  001000   001110000012234567889999999


Q ss_pred             CCCCCC-CCC---hhHHHHHHHHHHHH----HHHHHHhhCCCeEEEEecC
Q 028437          105 GVPRKP-GMT---RDDLFNINAGIVKD----LCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       105 g~~~~~-g~~---r~~~~~~N~~~~~~----i~~~i~~~~p~~~viv~sn  146 (209)
                      |..... ..+   ....+..|+.....    ..+.+++.  .+.||++|.
T Consensus        87 Gi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS  134 (242)
T 4b79_A           87 GISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQR--GGSILNIAS  134 (242)
T ss_dssp             CCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--CEEEEEECC
T ss_pred             CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCeEEEEee
Confidence            975421 122   23345667655444    44444432  478888864

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=97.83  E-value=0.00013  Score=64.47  Aligned_cols=70  Identities=23%  Similarity=0.332  Sum_probs=49.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC----------------CcceeEeecCCchh
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLG   91 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~----------------~~~v~~~~~~~d~~   91 (209)
                      ..|..|+|. |++|..++..|++.|+  +|+++|+++.  .+..+.....                ...+..   ++|  
T Consensus        11 ~~~~~ViGl-GyvGlp~A~~La~~G~--~V~~~D~~~~--kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~---ttd--   80 (431)
T 3ojo_A           11 GSKLTVVGL-GYIGLPTSIMFAKHGV--DVLGVDINQQ--TIDKLQNGQISIEEPGLQEVYEEVLSSGKLKV---STT--   80 (431)
T ss_dssp             -CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESS--
T ss_pred             CCccEEEee-CHHHHHHHHHHHHCCC--EEEEEECCHH--HHHHHHCCCCCcCCCCHHHHHHhhcccCceEE---eCc--
Confidence            359999999 9999999999999999  9999999853  2333333211                011222   233  


Q ss_pred             hhcCCCCEEEEcCCCCCC
Q 028437           92 QALEDSDVVIIPAGVPRK  109 (209)
Q Consensus        92 ~a~~~aD~Vi~~ag~~~~  109 (209)
                        +++||+||++.+.|..
T Consensus        81 --~~~aDvvii~VpTp~~   96 (431)
T 3ojo_A           81 --PEASDVFIIAVPTPNN   96 (431)
T ss_dssp             --CCCCSEEEECCCCCBC
T ss_pred             --hhhCCEEEEEeCCCcc
Confidence              4589999999887753

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.81  E-value=4.3e-05  Score=64.36  Aligned_cols=66  Identities=20%  Similarity=0.337  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .|+||.+||- |.+|..++..|++.|+  +|+.||+++.  ...++.....    ..   ..+++++.++||+||.+.
T Consensus         2 ~M~kIgfIGl-G~MG~~mA~~L~~~G~--~v~v~dr~~~--~~~~l~~~Ga----~~---a~s~~e~~~~~dvv~~~l   67 (300)
T 3obb_A            2 HMKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQS--AVDGLVAAGA----SA---ARSARDAVQGADVVISML   67 (300)
T ss_dssp             -CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHH--HHHHHHHTTC----EE---CSSHHHHHTTCSEEEECC
T ss_pred             CcCEEEEeee-hHHHHHHHHHHHhCCC--eEEEEcCCHH--HHHHHHHcCC----EE---cCCHHHHHhcCCceeecC
Confidence            3569999999 9999999999999999  9999999753  3333443321    11   235788899999999985

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.81  E-value=2.2e-05  Score=65.64  Aligned_cols=96  Identities=13%  Similarity=0.195  Sum_probs=61.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC-C-CCcceeEeecCCchhhhc-CCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-N-TRSEVAGYMGNDQLGQAL-EDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~-~-~~~~v~~~~~~~d~~~a~-~~aD~Vi~~a  104 (209)
                      +|||+|+|+ |.+|..++..|.+.|+  +|.++++++...   ++... . .+..+.     .+..+++ +++|+||++.
T Consensus         2 ~mkI~iiGa-Ga~G~~~a~~L~~~g~--~V~~~~r~~~~~---~~~~~~g~~~~~~~-----~~~~~~~~~~~D~vilav   70 (294)
T 3g17_A            2 SLSVAIIGP-GAVGTTIAYELQQSLP--HTTLIGRHAKTI---TYYTVPHAPAQDIV-----VKGYEDVTNTFDVIIIAV   70 (294)
T ss_dssp             -CCEEEECC-SHHHHHHHHHHHHHCT--TCEEEESSCEEE---EEESSTTSCCEEEE-----EEEGGGCCSCEEEEEECS
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeccCcE---EEEecCCeecccee-----cCchHhcCCCCCEEEEeC
Confidence            369999999 9999999999999998  999999974211   11111 1 111111     1223454 8999999985


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~  150 (209)
                      -..                .+.++++.++.+- ++..++.+.|-.+.
T Consensus        71 k~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~  101 (294)
T 3g17_A           71 KTH----------------QLDAVIPHLTYLAHEDTLIILAQNGYGQ  101 (294)
T ss_dssp             CGG----------------GHHHHGGGHHHHEEEEEEEEECCSSCCC
T ss_pred             Ccc----------------CHHHHHHHHHHhhCCCCEEEEeccCccc
Confidence            221                1234445555443 56778888898873

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.81  E-value=1.3e-05  Score=69.02  Aligned_cols=72  Identities=25%  Similarity=0.288  Sum_probs=46.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeE-eecCCchhhhcCCCCEEEEcC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .+.|||+|+|| |++|+.++..|.+ .+  +|.+.|++...  ...+.+...  .+.. ....+++.+.++++|+||+++
T Consensus        14 g~~mkilvlGa-G~vG~~~~~~L~~-~~--~v~~~~~~~~~--~~~~~~~~~--~~~~d~~d~~~l~~~~~~~DvVi~~~   85 (365)
T 3abi_A           14 GRHMKVLILGA-GNIGRAIAWDLKD-EF--DVYIGDVNNEN--LEKVKEFAT--PLKVDASNFDKLVEVMKEFELVIGAL   85 (365)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHTT-TS--EEEEEESCHHH--HHHHTTTSE--EEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCccEEEEECC-CHHHHHHHHHHhc-CC--CeEEEEcCHHH--HHHHhccCC--cEEEecCCHHHHHHHHhCCCEEEEec
Confidence            34589999999 9999999988865 45  89999997421  122222210  1110 111234677889999999997


Q ss_pred             C
Q 028437          105 G  105 (209)
Q Consensus       105 g  105 (209)
                      +
T Consensus        86 p   86 (365)
T 3abi_A           86 P   86 (365)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=97.80  E-value=7.7e-05  Score=61.56  Aligned_cols=113  Identities=13%  Similarity=0.167  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhc-CCCCC--cceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG-HINTR--SEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~-~~~~~--~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      +.++||||++.||..++..|++.|.  +|++.++++.+.....+. ..+..  ..+...  .+...+.+...|++|+.||
T Consensus        12 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~--~~~~~~~~G~iDilVnnAG   87 (261)
T 4h15_A           12 KRALITAGTKGAGAATVSLFLELGA--QVLTTARARPEGLPEELFVEADLTTKEGCAIV--AEATRQRLGGVDVIVHMLG   87 (261)
T ss_dssp             CEEEESCCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTSCTTTEEECCTTSHHHHHHH--HHHHHHHTSSCSEEEECCC
T ss_pred             CEEEEeccCcHHHHHHHHHHHHcCC--EEEEEECCchhCCCcEEEEEcCCCCHHHHHHH--HHHHHHHcCCCCEEEECCC
Confidence            4788999999999999999999999  999999964321111110 01100  000000  0122344667899999998


Q ss_pred             CCCCC-C----CCh---hHHHHHHHHHH----HHHHHHHHhhCCCeEEEEecC
Q 028437          106 VPRKP-G----MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       106 ~~~~~-g----~~r---~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ..... +    .+.   ...+..|+...    +.+++.+.+. ..+.||++|.
T Consensus        88 ~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~Iv~isS  139 (261)
T 4h15_A           88 GSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVAR-GSGVVVHVTS  139 (261)
T ss_dssp             CCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhc-CCceEEEEEe
Confidence            64321 1    222   23456676544    5555566554 4567777754

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=97.80  E-value=7.6e-05  Score=60.81  Aligned_cols=112  Identities=13%  Similarity=0.155  Sum_probs=67.7

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCC---C---CCcceeEeecCCchhh-----
Q 028437           29 RKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHI---N---TRSEVAGYMGNDQLGQ-----   92 (209)
Q Consensus        29 ~kI~IiGas--G~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~---~---~~~~v~~~~~~~d~~~-----   92 (209)
                      ++++|+||+  |.+|.+++..|++.|.  +|++++++..   .....++...   .   ...++..   .++.++     
T Consensus        21 k~vlITGas~~~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~---~~~v~~~~~~~   95 (267)
T 3gdg_A           21 KVVVVTGASGPKGMGIEAARGCAEMGA--AVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDS---YESCEKLVKDV   95 (267)
T ss_dssp             CEEEETTCCSSSSHHHHHHHHHHHTSC--EEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTC---HHHHHHHHHHH
T ss_pred             CEEEEECCCCCCChHHHHHHHHHHCCC--eEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCC---HHHHHHHHHHH
Confidence            589999998  8999999999999998  9999988642   1222223211   0   0111111   112222     


Q ss_pred             --hcCCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHH----HhhCCCeEEEEecC
Q 028437           93 --ALEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (209)
Q Consensus        93 --a~~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i----~~~~p~~~viv~sn  146 (209)
                        .+...|++|++||......   .+   ....+..|+.....+.+.+    ++. +.+.+|++|.
T Consensus        96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS  160 (267)
T 3gdg_A           96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKER-GTGSLVITAS  160 (267)
T ss_dssp             HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECC
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHc-CCceEEEEcc
Confidence              2346799999999764221   12   2345677776666665555    443 3456777654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.80  E-value=4.1e-05  Score=62.45  Aligned_cols=66  Identities=14%  Similarity=0.241  Sum_probs=48.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC-CCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-NTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~-~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      +|||+|+|+ |.+|..++..|.+.|+  +|.++|+++...  .++... .    +..   ..+++++++++|+||++..
T Consensus         3 ~m~i~iiG~-G~mG~~~a~~l~~~g~--~v~~~~~~~~~~--~~~~~~~g----~~~---~~~~~~~~~~~D~Vi~~v~   69 (259)
T 2ahr_A            3 AMKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLERS--KEIAEQLA----LPY---AMSHQDLIDQVDLVILGIK   69 (259)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHHH--HHHHHHHT----CCB---CSSHHHHHHTCSEEEECSC
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCHHHH--HHHHHHcC----CEe---eCCHHHHHhcCCEEEEEeC
Confidence            479999998 9999999999999887  999999975321  122211 1    111   2356778889999999964

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=97.78  E-value=0.00014  Score=64.54  Aligned_cols=113  Identities=20%  Similarity=0.260  Sum_probs=72.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHH----HhhcCCCCCcceeEeecCCchhhh-------cCC-
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA----ADVGHINTRSEVAGYMGNDQLGQA-------LED-   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~----~dl~~~~~~~~v~~~~~~~d~~~a-------~~~-   96 (209)
                      ..++||||+|.+|..++..|++.|.  +|++++++......    .++......+++   ...++.++.       +.+ 
T Consensus       214 k~~LVTGgsgGIG~aiA~~La~~Ga--~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dv---td~~~v~~~~~~~~~~~g~~  288 (454)
T 3u0b_A          214 KVAVVTGAARGIGATIAEVFARDGA--TVVAIDVDGAAEDLKRVADKVGGTALTLDV---TADDAVDKITAHVTEHHGGK  288 (454)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECGGGHHHHHHHHHHHTCEEEECCT---TSTTHHHHHHHHHHHHSTTC
T ss_pred             CEEEEeCCchHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEec---CCHHHHHHHHHHHHHHcCCC
Confidence            5799999999999999999999998  99999986422111    111110000111   111222222       224 


Q ss_pred             CCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhC---CCeEEEEecC
Q 028437           97 SDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMISN  146 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~---p~~~viv~sn  146 (209)
                      .|+||++||......   .+   ....+..|+....++.+.+....   +...||++|.
T Consensus       289 id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS  347 (454)
T 3u0b_A          289 VDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSS  347 (454)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECC
T ss_pred             ceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeC
Confidence            899999999864321   22   23457789999999998887652   4567888764

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.77  E-value=2.9e-05  Score=57.84  Aligned_cols=92  Identities=15%  Similarity=0.239  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      .+||+|+|+ |.+|..++..|...|.  +|.++|+++.+.  ...++.     .....   .++++++++++|+||.+.+
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~--~v~v~~r~~~~~~~~a~~~~-----~~~~~---~~~~~~~~~~~Divi~at~   89 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQY--KVTVAGRNIDHVRAFAEKYE-----YEYVL---INDIDSLIKNNDVIITATS   89 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTC--EEEEEESCHHHHHHHHHHHT-----CEEEE---CSCHHHHHHTCSEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCHHHHHHHHHHhC-----CceEe---ecCHHHHhcCCCEEEEeCC
Confidence            459999998 9999999999988887  799999975322  122222     11111   3467788999999999976


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      .+. +-...                  ....+...++.+++|.+
T Consensus        90 ~~~-~~~~~------------------~~l~~g~~vid~~~p~~  114 (144)
T 3oj0_A           90 SKT-PIVEE------------------RSLMPGKLFIDLGNPPN  114 (144)
T ss_dssp             CSS-CSBCG------------------GGCCTTCEEEECCSSCS
T ss_pred             CCC-cEeeH------------------HHcCCCCEEEEccCCcc
Confidence            542 11110                  11234678888999977

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.74  E-value=3.1e-05  Score=63.27  Aligned_cols=64  Identities=17%  Similarity=0.248  Sum_probs=46.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||+|+|+ |.+|..++..|.+.|+  +|+++|+........++....    +.     ++.+++++++|+||++.
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~~g~--~V~~~~~~~~~~~~~~~~~~g----~~-----~~~~~~~~~aDvvi~~v   64 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIERARTVG----VT-----ETSEEDVYSCPVVISAV   64 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHHHHHHHT----CE-----ECCHHHHHTSSEEEECS
T ss_pred             CeEEEEec-hHHHHHHHHHHHHCCC--eEEEeCCccCHHHHHHHHHCC----Cc-----CCHHHHHhcCCEEEEEC
Confidence            58999999 9999999999999999  999988732222222232221    11     13467788999999996

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.74  E-value=4.2e-05  Score=63.47  Aligned_cols=64  Identities=19%  Similarity=0.287  Sum_probs=48.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||+|+|+ |.+|..++..|.+.|+  +|+++|+++..  ...+....    +..   .++++++++++|+||++.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~g----~~~---~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMKHGY--PLIIYDVFPDA--CKEFQDAG----EQV---VSSPADVAEKADRIITML   64 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHTTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CeEEEEec-cHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            58999999 9999999999999998  99999997532  22333322    111   235677788999999985

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.71  E-value=9.7e-05  Score=61.47  Aligned_cols=116  Identities=18%  Similarity=0.176  Sum_probs=72.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCC--CcceeEeec----CCchhhhcCCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT--RSEVAGYMG----NDQLGQALEDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~--~~~v~~~~~----~~d~~~a~~~aD~V  100 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  .....++.....  .+++.....    -+...+.+...|++
T Consensus        30 KvalVTGas~GIG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiL  107 (273)
T 4fgs_A           30 KIAVITGATSGIGLAAAKRFVAEGA--RVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDVL  107 (273)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4578999999999999999999999  9999999752  223334432211  111111000    01122334578999


Q ss_pred             EEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437          101 IIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus       101 i~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      |+.||.....   ..+   ....+..|+.....+++.+.++- ..+.+|+++.
T Consensus       108 VNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS  160 (273)
T 4fgs_A          108 FVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS  160 (273)
T ss_dssp             EECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred             EECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee
Confidence            9999875421   122   34457788887777777766543 3457777753

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.70  E-value=7e-05  Score=62.29  Aligned_cols=78  Identities=17%  Similarity=0.202  Sum_probs=51.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCC-CCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHI-NTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~-~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .++++|+||+|.+|++++..|++.|.  +|+++++++.+.  ...++... .......++...++++++++++|+||+++
T Consensus       119 gk~vlVtGaaGGiG~aia~~L~~~G~--~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~a  196 (287)
T 1lu9_A          119 GKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAG  196 (287)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEECC
Confidence            35899999889999999999999998  899999974221  22223211 11111111111123567788999999999


Q ss_pred             CCC
Q 028437          105 GVP  107 (209)
Q Consensus       105 g~~  107 (209)
                      |..
T Consensus       197 g~g  199 (287)
T 1lu9_A          197 AIG  199 (287)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            754

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.69  E-value=7e-05  Score=64.53  Aligned_cols=96  Identities=20%  Similarity=0.223  Sum_probs=58.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-----CccEEEEEecCCchhHHHhhcCCCC----CcceeEeecCCchhhhcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNP-----LVSRLALYDIANTPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSD   98 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g-----~~~ev~l~D~~~~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aD   98 (209)
                      |+||+|+||+|.+|+.++..|.+++     .+ +++.+......++..+-.+...    ...+..    .+ .++++++|
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~-ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~----~~-~~~~~~~D   82 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRL-RIGALTAATSAGSTLGEHHPHLTPLAHRVVEP----TE-AAVLGGHD   82 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSE-EEEEEEESSCTTSBGGGTCTTCGGGTTCBCEE----CC-HHHHTTCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccE-EEEEEECCCcCCCchhhhcccccccceeeecc----CC-HHHhcCCC
Confidence            4799999999999999999999877     33 7777754322122111111111    111221    13 35577999


Q ss_pred             EEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 028437           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus        99 ~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~  148 (209)
                      +||++.|...                .+++++.+ +.  .+++|-.|++.
T Consensus        83 vVf~alg~~~----------------s~~~~~~~-~~--G~~vIDlSa~~  113 (352)
T 2nqt_A           83 AVFLALPHGH----------------SAVLAQQL-SP--ETLIIDCGADF  113 (352)
T ss_dssp             EEEECCTTSC----------------CHHHHHHS-CT--TSEEEECSSTT
T ss_pred             EEEECCCCcc----------------hHHHHHHH-hC--CCEEEEECCCc
Confidence            9999975431                24555665 33  35788888775

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=97.68  E-value=0.00035  Score=64.29  Aligned_cols=115  Identities=19%  Similarity=0.235  Sum_probs=64.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec---------CC--chhHHHhhcCCCCCcceeEeecCCchhhhc---
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI---------AN--TPGVAADVGHINTRSEVAGYMGNDQLGQAL---   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~---------~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~---   94 (209)
                      +.++||||+|.+|.+++..|++.|.  +|++.|+         +.  ......++...... .+.++....+.++.+   
T Consensus        20 k~~lVTGas~GIG~aiA~~La~~Ga--~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~D~~d~~~~~~~~~~~   96 (613)
T 3oml_A           20 RVAVVTGAGAGLGREYALLFAERGA--KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGE-AVADYNSVIDGAKVIETA   96 (613)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEC--------------CHHHHHHHHHHTTCC-EEECCCCGGGHHHHHC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcccccccCCHHHHHHHHHHHHHhCCe-EEEEeCCHHHHHHHHHHH
Confidence            4789999999999999999999998  9999987         21  11122233322111 011111111222333   


Q ss_pred             ----CCCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEecC
Q 028437           95 ----EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (209)
Q Consensus        95 ----~~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~sn  146 (209)
                          ...|++|++||.....   ..+   ....+..|+.....+.+.+..+   ...++||++|.
T Consensus        97 ~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS  161 (613)
T 3oml_A           97 IKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSS  161 (613)
T ss_dssp             --------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             HHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence                3679999999976422   122   2345677877666666655322   34578888864

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.63  E-value=0.0002  Score=61.17  Aligned_cols=64  Identities=23%  Similarity=0.281  Sum_probs=46.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||+|+|+ |.+|..++..|...|+  +|+++|+++..... ......    +..   . ++++++++||+||++.
T Consensus        17 ~~I~IIG~-G~mG~alA~~L~~~G~--~V~~~~~~~~~~~~-~a~~~G----~~~---~-~~~e~~~~aDvVilav   80 (338)
T 1np3_A           17 KKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSGSATVA-KAEAHG----LKV---A-DVKTAVAAADVVMILT   80 (338)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTTCHHHH-HHHHTT----CEE---E-CHHHHHHTCSEEEECS
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCcC--EEEEEECChHHHHH-HHHHCC----CEE---c-cHHHHHhcCCEEEEeC
Confidence            58999999 9999999999999998  89999987532111 111111    111   1 4567889999999985

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.60  E-value=0.00089  Score=55.07  Aligned_cols=114  Identities=18%  Similarity=0.168  Sum_probs=67.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCCC-----cceeEeec----CCchhhhcCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTR-----SEVAGYMG----NDQLGQALEDSD   98 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~-----~~v~~~~~----~~d~~~a~~~aD   98 (209)
                      +.++||||++.+|..++..|++.|.  .|++.|++.... ....+......     +++.....    -....+.+...|
T Consensus         8 KvalVTGas~GIG~aia~~la~~Ga--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iD   85 (258)
T 4gkb_A            8 KVVIVTGGASGIGGAISMRLAEERA--IPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRLD   85 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            4788999999999999999999998  999999975321 22222221111     11110000    011223356789


Q ss_pred             EEEEcCCCCCCCC--CChh---HHHHHHHHHH----HHHHHHHHhhCCCeEEEEecC
Q 028437           99 VVIIPAGVPRKPG--MTRD---DLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        99 ~Vi~~ag~~~~~g--~~r~---~~~~~N~~~~----~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ++|+.||......  .+.+   ..+..|+...    +..++.|++.  .+.||++|.
T Consensus        86 iLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS  140 (258)
T 4gkb_A           86 GLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKAT--RGAIVNISS  140 (258)
T ss_dssp             EEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred             EEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCeEEEEee
Confidence            9999999754332  2332   3455665544    4455555433  367888864

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.58  E-value=8.9e-05  Score=63.39  Aligned_cols=64  Identities=16%  Similarity=0.320  Sum_probs=48.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ....++|+|+|. |.+|+.++..|...|+  +|..+|+++....       .    ...   ..++++.+++||+|+++.
T Consensus       161 ~l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~dr~~~~~~-------g----~~~---~~~l~ell~~aDvVil~v  223 (333)
T 3ba1_A          161 KFSGKRVGIIGL-GRIGLAVAERAEAFDC--PISYFSRSKKPNT-------N----YTY---YGSVVELASNSDILVVAC  223 (333)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSCCTTC-------C----SEE---ESCHHHHHHTCSEEEECS
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCchhcc-------C----cee---cCCHHHHHhcCCEEEEec
Confidence            344569999999 9999999999999998  9999998653110       1    111   136778899999999986


Q ss_pred             C
Q 028437          105 G  105 (209)
Q Consensus       105 g  105 (209)
                      .
T Consensus       224 P  224 (333)
T 3ba1_A          224 P  224 (333)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=97.57  E-value=0.00057  Score=61.40  Aligned_cols=113  Identities=21%  Similarity=0.235  Sum_probs=71.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-----hhHHHhhcCCCCCcceeEee-cCC---chhhhcC----
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-----PGVAADVGHINTRSEVAGYM-GND---QLGQALE----   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-----~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a~~----   95 (209)
                      .+++||||+|.+|..++..|++.|. ..|++.+++..     .....++.....  ++..+. +.+   ++++.++    
T Consensus       240 ~~vLITGgsgGIG~alA~~La~~Ga-~~vvl~~R~~~~~~~~~~l~~~l~~~g~--~v~~~~~Dvtd~~~v~~~~~~i~~  316 (496)
T 3mje_A          240 GSVLVTGGTGGIGGRVARRLAEQGA-AHLVLTSRRGADAPGAAELRAELEQLGV--RVTIAACDAADREALAALLAELPE  316 (496)
T ss_dssp             SEEEEETCSSHHHHHHHHHHHHTTC-SEEEEEESSGGGSTTHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHTCCT
T ss_pred             CEEEEECCCCchHHHHHHHHHHCCC-cEEEEEeCCCCChHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHH
Confidence            5899999999999999999999885 36888888531     112223333221  222211 111   2333332    


Q ss_pred             --CCCEEEEcCCCCCCC----CCC---hhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           96 --DSDVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        96 --~aD~Vi~~ag~~~~~----g~~---r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                        ..|.||++||.....    ..+   ....+..|+....++.+.+.+... ..||++|
T Consensus       317 ~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~-~~iV~~S  374 (496)
T 3mje_A          317 DAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDL-DAFVLFS  374 (496)
T ss_dssp             TSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCC-SEEEEEE
T ss_pred             hCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCC-CEEEEEe
Confidence              479999999986211    122   234678899999999998876543 4566665

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=97.55  E-value=0.00026  Score=60.66  Aligned_cols=64  Identities=22%  Similarity=0.345  Sum_probs=48.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ....++|+|+|. |.+|+.++..|...|.  +|..+|+.+...       ..    ...   ..++++.+++||+|+++.
T Consensus       168 ~l~gktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~-------~~----~~~---~~sl~ell~~aDvVil~v  230 (340)
T 4dgs_A          168 SPKGKRIGVLGL-GQIGRALASRAEAFGM--SVRYWNRSTLSG-------VD----WIA---HQSPVDLARDSDVLAVCV  230 (340)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCTT-------SC----CEE---CSSHHHHHHTCSEEEECC
T ss_pred             cccCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCcccc-------cC----cee---cCCHHHHHhcCCEEEEeC
Confidence            334579999999 9999999999999998  999999865320       01    111   236788999999999985


Q ss_pred             C
Q 028437          105 G  105 (209)
Q Consensus       105 g  105 (209)
                      .
T Consensus       231 P  231 (340)
T 4dgs_A          231 A  231 (340)
T ss_dssp             -
T ss_pred             C
Confidence            3

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.55  E-value=0.00039  Score=57.78  Aligned_cols=73  Identities=25%  Similarity=0.339  Sum_probs=45.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEE-EecCCchhHHHhhcCCC-CCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLAL-YDIANTPGVAADVGHIN-TRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l-~D~~~~~~~~~dl~~~~-~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |+||+|+||+|.+|+.++..+.+.+.. +++. +|++.....-.|+.... ....+.   .++|+++.++++|+||...
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~-eLv~~~d~~~~~~~G~d~gel~g~~~gv~---v~~dl~~ll~~~DVVIDfT   81 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDA-TLVGALDRTGSPQLGQDAGAFLGKQTGVA---LTDDIERVCAEADYLIDFT   81 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTE-EEEEEBCCTTCTTTTSBTTTTTTCCCSCB---CBCCHHHHHHHCSEEEECS
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEEecCcccccccHHHHhCCCCCce---ecCCHHHHhcCCCEEEEcC
Confidence            579999998899999999988765432 6655 67753211111111110 001111   1357788888999999874

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.52  E-value=0.00025  Score=60.17  Aligned_cols=126  Identities=17%  Similarity=0.194  Sum_probs=71.0

Q ss_pred             CCCeEEEEcCCCchHHH-HHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhc-CCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~-la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~-~~aD~Vi~~a  104 (209)
                      .++||.++|. |..|.+ ++..|.++|+  +|.+.|..+.......|.....  .+  ..+ .+.+... .++|+||.+-
T Consensus         3 ~~~~i~~iGi-Gg~Gms~~A~~L~~~G~--~V~~~D~~~~~~~~~~L~~~gi--~v--~~g-~~~~~l~~~~~d~vV~Sp   74 (326)
T 3eag_A            3 AMKHIHIIGI-GGTFMGGLAAIAKEAGF--EVSGCDAKMYPPMSTQLEALGI--DV--YEG-FDAAQLDEFKADVYVIGN   74 (326)
T ss_dssp             CCCEEEEESC-CSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHTTC--EE--EES-CCGGGGGSCCCSEEEECT
T ss_pred             CCcEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEcCCCCcHHHHHHHhCCC--EE--ECC-CCHHHcCCCCCCEEEECC
Confidence            3579999999 999996 8999999999  9999999643222233443321  11  111 2333333 4899999998


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhh-CCCeEEEEecCCCCC--cHHHHHHHHHHh
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNS--TVPIAAEVFKKA  162 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~-~p~~~viv~snP~~~--~~~i~~~~~~~~  162 (209)
                      |.+...- ......+.+++++.+. +.+.+. ..+.++|-+|...+=  ++.+++.+++..
T Consensus        75 gi~~~~p-~~~~a~~~gi~v~~~~-e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  133 (326)
T 3eag_A           75 VAKRGMD-VVEAILNLGLPYISGP-QWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA  133 (326)
T ss_dssp             TCCTTCH-HHHHHHHTTCCEEEHH-HHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred             CcCCCCH-HHHHHHHcCCcEEeHH-HHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            8764211 0111122233332222 222221 234456777766553  335666666654

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=97.51  E-value=0.00022  Score=61.03  Aligned_cols=69  Identities=22%  Similarity=0.312  Sum_probs=50.4

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        24 ~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      .....++|+|+|. |.+|+.++..|...|.  +|+.+|+........+.   .    +..    .++++.+++||+|+.+
T Consensus       161 ~~l~g~tvgIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~  226 (335)
T 2g76_A          161 TELNGKTLGILGL-GRIGREVATRMQSFGM--KTIGYDPIISPEVSASF---G----VQQ----LPLEEIWPLCDFITVH  226 (335)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSSCHHHHHHT---T----CEE----CCHHHHGGGCSEEEEC
T ss_pred             cCCCcCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc---C----cee----CCHHHHHhcCCEEEEe
Confidence            3445579999999 9999999999998898  99999987533221111   1    111    2567889999999998


Q ss_pred             CCC
Q 028437          104 AGV  106 (209)
Q Consensus       104 ag~  106 (209)
                      ...
T Consensus       227 ~P~  229 (335)
T 2g76_A          227 TPL  229 (335)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            643

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=97.51  E-value=0.00067  Score=56.15  Aligned_cols=116  Identities=11%  Similarity=0.039  Sum_probs=68.4

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCccEEEEEecCCc-----------h-hHHHhhcCCCCCcceeE-----------
Q 028437           29 RKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-----------P-GVAADVGHINTRSEVAG-----------   83 (209)
Q Consensus        29 ~kI~IiGas--G~vG~~la~~L~~~g~~~ev~l~D~~~~-----------~-~~~~dl~~~~~~~~v~~-----------   83 (209)
                      ++++||||+  |.+|.+++..|++.|.  +|++.|+++.           . ....++...........           
T Consensus         9 k~~lVTGas~~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (297)
T 1d7o_A            9 KRAFIAGIADDNGYGWAVAKSLAAAGA--EILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDNPE   86 (297)
T ss_dssp             CEEEEECCSSSSSHHHHHHHHHHHTTC--EEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCSGG
T ss_pred             CEEEEECCCCCCChHHHHHHHHHHCCC--eEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceeccchh
Confidence            579999998  9999999999999998  9999985310           0 00111111000000000           


Q ss_pred             -eec------------CCchhhh-------cCCCCEEEEcCCCCC---CC--CCC---hhHHHHHHHHHHHHHHHHHHhh
Q 028437           84 -YMG------------NDQLGQA-------LEDSDVVIIPAGVPR---KP--GMT---RDDLFNINAGIVKDLCSAIAKY  135 (209)
Q Consensus        84 -~~~------------~~d~~~a-------~~~aD~Vi~~ag~~~---~~--g~~---r~~~~~~N~~~~~~i~~~i~~~  135 (209)
                       +..            .++.++.       +...|++|+.||...   .+  ..+   ....+..|+.....+.+.+.++
T Consensus        87 dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~  166 (297)
T 1d7o_A           87 DVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLPI  166 (297)
T ss_dssp             GSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             hhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence             000            1122222       336899999998632   11  122   2345778998888888888765


Q ss_pred             C-CCeEEEEecC
Q 028437          136 C-PNAIVNMISN  146 (209)
Q Consensus       136 ~-p~~~viv~sn  146 (209)
                      - ..+.+|++|.
T Consensus       167 m~~~g~iv~isS  178 (297)
T 1d7o_A          167 MNPGGASISLTY  178 (297)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             hccCceEEEEec
Confidence            3 2367777764

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.49  E-value=0.00012  Score=63.17  Aligned_cols=76  Identities=17%  Similarity=0.260  Sum_probs=43.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcce-eEeecCCchhhhcCCCCEEEEcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV-AGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v-~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ++||+|+||+|.+|+.++..|.+.+.+ +++.+......+...+-.+..+...+ ..+. ..+ ++.++++|+||++.|.
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~~~~~g~~~~~~~~~~~~~v~~dl~-~~~-~~~~~~vDvVf~atp~   92 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHF-QVTLMTADRKAGQSMESVFPHLRAQKLPTLV-SVK-DADFSTVDAVFCCLPH   92 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSE-EEEEEBCSTTTTSCHHHHCGGGTTSCCCCCB-CGG-GCCGGGCSEEEECCCT
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCc-EEEEEeCchhcCCCHHHhCchhcCcccccce-ecc-hhHhcCCCEEEEcCCc
Confidence            369999999999999999999887644 66666443222211111111110000 0010 012 3455789999998753

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.49  E-value=0.00026  Score=60.73  Aligned_cols=74  Identities=18%  Similarity=0.244  Sum_probs=43.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCC--cceeEeecCCchhhhcCCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .++||+|+||+|.+|+.++..|.+.+.+ +++.+......+...+-.+..+.  ..+..    .+++ +++++|+||++.
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~-elv~v~s~~~~g~~~~~~~~~~~g~~~~~~----~~~~-~~~~vDvV~~a~   76 (345)
T 2ozp_A            3 GKKTLSIVGASGYAGGEFLRLALSHPYL-EVKQVTSRRFAGEPVHFVHPNLRGRTNLKF----VPPE-KLEPADILVLAL   76 (345)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHTCTTE-EEEEEBCSTTTTSBGGGTCGGGTTTCCCBC----BCGG-GCCCCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHcCCCc-EEEEEECchhhCchhHHhCchhcCcccccc----cchh-HhcCCCEEEEcC
Confidence            4579999999999999999998876543 66665443222211110010000  01111    1233 368999999997


Q ss_pred             CC
Q 028437          105 GV  106 (209)
Q Consensus       105 g~  106 (209)
                      |.
T Consensus        77 g~   78 (345)
T 2ozp_A           77 PH   78 (345)
T ss_dssp             CT
T ss_pred             Cc
Confidence            64

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.46  E-value=0.0032  Score=51.18  Aligned_cols=115  Identities=12%  Similarity=0.146  Sum_probs=67.8

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-cCCc----------hhhh
Q 028437           29 RKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-GNDQ----------LGQA   93 (209)
Q Consensus        29 ~kI~IiGasG--~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~~d----------~~~a   93 (209)
                      +.++||||+|  .||..++..|++.|.  +|++.|+++..  .....+.+.... ....+. +-++          ..+.
T Consensus         7 K~alVTGaa~~~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (256)
T 4fs3_A            7 KTYVIMGIANKRSIAFGVAKVLDQLGA--KLVFTYRKERSRKELEKLLEQLNQP-EAHLYQIDVQSDEEVINGFEQIGKD   83 (256)
T ss_dssp             CEEEEECCCSTTCHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHGGGTCS-SCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCC-cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4788999976  799999999999999  99999997521  122222222110 111110 0111          1233


Q ss_pred             cCCCCEEEEcCCCCCCC-------CCChhHH---HHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           94 LEDSDVVIIPAGVPRKP-------GMTRDDL---FNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        94 ~~~aD~Vi~~ag~~~~~-------g~~r~~~---~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      +...|++|+.||.....       ..+.+++   +..|+.....++....... ..+.||++|.
T Consensus        84 ~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS  147 (256)
T 4fs3_A           84 VGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTY  147 (256)
T ss_dssp             HCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEEC
T ss_pred             hCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEec
Confidence            56789999999864311       1223333   3456655556666655554 3578888864

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=97.45  E-value=0.001  Score=60.09  Aligned_cols=117  Identities=13%  Similarity=0.110  Sum_probs=72.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-ecCCc---------------hhHHHhhcCCCCCcceeEee-cCC-
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANT---------------PGVAADVGHINTRSEVAGYM-GND-   88 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~-D~~~~---------------~~~~~dl~~~~~~~~v~~~~-~~~-   88 (209)
                      +...++||||+|.+|..++..|++.|. ..|++. +++..               .....++....  .++..+. +-+ 
T Consensus       250 ~~~~vLITGgsgGIG~~lA~~La~~G~-~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~v~~~~~Dvtd  326 (525)
T 3qp9_A          250 ADGTVLVTGAEEPAAAEAARRLARDGA-GHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLG--ATATVVTCDLTD  326 (525)
T ss_dssp             TTSEEEESSTTSHHHHHHHHHHHHHTC-CEEEEEECCCC---------------CHHHHHHHHHHT--CEEEEEECCTTS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-CEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcC--CEEEEEECCCCC
Confidence            345899999999999999999999987 237777 77631               11222332221  1222211 111 


Q ss_pred             --chhhhcC------CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhhCC----CeEEEEecC
Q 028437           89 --QLGQALE------DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYCP----NAIVNMISN  146 (209)
Q Consensus        89 --d~~~a~~------~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~~p----~~~viv~sn  146 (209)
                        +++++++      ..|.|||+||.....   ..+   ....+..|+....++.+.+.....    ...||++|.
T Consensus       327 ~~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS  402 (525)
T 3qp9_A          327 AEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSS  402 (525)
T ss_dssp             HHHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECC
Confidence              2333343      459999999986422   122   234577899999999998887641    356666664

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.45  E-value=7.9e-05  Score=65.21  Aligned_cols=78  Identities=22%  Similarity=0.251  Sum_probs=49.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCc-cEEEEEecCCchh--HHHhhcCCC-CCcceeEe--ecCCchhhhcCC--CCE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLV-SRLALYDIANTPG--VAADVGHIN-TRSEVAGY--MGNDQLGQALED--SDV   99 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~-~ev~l~D~~~~~~--~~~dl~~~~-~~~~v~~~--~~~~d~~~a~~~--aD~   99 (209)
                      |+||+|+|| |++|+.++..|++.+.. .+|.+.|++..+.  ...++.... ........  ...+++++++++  +|+
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI   79 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence            369999999 99999999999998843 5999999975322  222332210 00011111  112345666776  899


Q ss_pred             EEEcCCC
Q 028437          100 VIIPAGV  106 (209)
Q Consensus       100 Vi~~ag~  106 (209)
                      ||++++.
T Consensus        80 Vin~ag~   86 (405)
T 4ina_A           80 VLNIALP   86 (405)
T ss_dssp             EEECSCG
T ss_pred             EEECCCc
Confidence            9999863

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.43  E-value=0.00013  Score=64.75  Aligned_cols=73  Identities=14%  Similarity=0.147  Sum_probs=48.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEe--e--cCCchhhhcCCCCEEEEc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY--M--GNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~--~--~~~d~~~a~~~aD~Vi~~  103 (209)
                      +++|+|+|+ |++|++++..|++.|.  +|+++|+++.+  ..++.... . .+...  .  ..++++++++++|+||++
T Consensus         3 ~k~VlViGa-G~iG~~ia~~L~~~G~--~V~v~~R~~~~--a~~la~~~-~-~~~~~~~Dv~d~~~l~~~l~~~DvVIn~   75 (450)
T 1ff9_A            3 TKSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLES--AKKLSAGV-Q-HSTPISLDVNDDAALDAEVAKHDLVISL   75 (450)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTC--EEEEEESSHHH--HHHTTTTC-T-TEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCcC--EEEEEECCHHH--HHHHHHhc-C-CceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence            468999996 9999999999999897  89999997422  22232211 0 11111  1  112455778899999999


Q ss_pred             CCCC
Q 028437          104 AGVP  107 (209)
Q Consensus       104 ag~~  107 (209)
                      ++..
T Consensus        76 a~~~   79 (450)
T 1ff9_A           76 IPYT   79 (450)
T ss_dssp             CC--
T ss_pred             Cccc
Confidence            8653

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=97.42  E-value=0.00036  Score=59.90  Aligned_cols=67  Identities=21%  Similarity=0.322  Sum_probs=50.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ....++|+|+|. |.||+.++..|...|.  +|..+|+.+.......    .    ...   ..++++.+++||+|+++.
T Consensus       170 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~----g----~~~---~~~l~ell~~sDvV~l~~  235 (345)
T 4g2n_A          170 GLTGRRLGIFGM-GRIGRAIATRARGFGL--AIHYHNRTRLSHALEE----G----AIY---HDTLDSLLGASDIFLIAA  235 (345)
T ss_dssp             CCTTCEEEEESC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHT----T----CEE---CSSHHHHHHTCSEEEECS
T ss_pred             ccCCCEEEEEEe-ChhHHHHHHHHHHCCC--EEEEECCCCcchhhhc----C----CeE---eCCHHHHHhhCCEEEEec
Confidence            344579999999 9999999999999998  9999999653222111    1    111   136788999999999986


Q ss_pred             C
Q 028437          105 G  105 (209)
Q Consensus       105 g  105 (209)
                      .
T Consensus       236 P  236 (345)
T 4g2n_A          236 P  236 (345)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.41  E-value=0.00026  Score=59.73  Aligned_cols=67  Identities=27%  Similarity=0.349  Sum_probs=49.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ....++|+|+|. |.+|+.++..|...|.  +|+.+|+++......+.   .    +..    .++++.+++||+|+.+.
T Consensus       139 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~~  204 (307)
T 1wwk_A          139 ELEGKTIGIIGF-GRIGYQVAKIANALGM--NILLYDPYPNEERAKEV---N----GKF----VDLETLLKESDVVTIHV  204 (307)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT---T----CEE----CCHHHHHHHCSEEEECC
T ss_pred             ccCCceEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHhhc---C----ccc----cCHHHHHhhCCEEEEec
Confidence            444579999999 9999999999999998  99999997543222111   1    111    14678889999999986


Q ss_pred             C
Q 028437          105 G  105 (209)
Q Consensus       105 g  105 (209)
                      .
T Consensus       205 p  205 (307)
T 1wwk_A          205 P  205 (307)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.41  E-value=0.00039  Score=59.29  Aligned_cols=69  Identities=23%  Similarity=0.425  Sum_probs=50.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ....++|+|+|. |.+|+.++..|...|+  +|..+|+++......+..       +. .   .++++.+++||+|+++.
T Consensus       147 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~g-------~~-~---~~l~~~l~~aDvVil~v  212 (334)
T 2dbq_A          147 DVYGKTIGIIGL-GRIGQAIAKRAKGFNM--RILYYSRTRKEEVERELN-------AE-F---KPLEDLLRESDFVVLAV  212 (334)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHC-------CE-E---CCHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEECCCcchhhHhhcC-------cc-c---CCHHHHHhhCCEEEECC
Confidence            344579999999 9999999999999998  999999976432111111       11 1   25678899999999996


Q ss_pred             CCC
Q 028437          105 GVP  107 (209)
Q Consensus       105 g~~  107 (209)
                      ...
T Consensus       213 p~~  215 (334)
T 2dbq_A          213 PLT  215 (334)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=97.40  E-value=0.00062  Score=57.01  Aligned_cols=33  Identities=24%  Similarity=0.243  Sum_probs=29.9

Q ss_pred             CeEEEEcC--CCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGA--AGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGa--sG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      +.++||||  +|.+|.+++..|++.|.  +|++.+++
T Consensus        10 k~~lVTGa~~s~GIG~aia~~la~~G~--~Vv~~~r~   44 (315)
T 2o2s_A           10 QTAFVAGVADSHGYGWAIAKHLASAGA--RVALGTWP   44 (315)
T ss_dssp             CEEEEECCSSSSSHHHHHHHHHHTTTC--EEEEEECH
T ss_pred             CEEEEeCCCCCCChHHHHHHHHHHCCC--EEEEEecc
Confidence            47999998  79999999999999998  99999863

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.38  E-value=0.00074  Score=59.62  Aligned_cols=69  Identities=13%  Similarity=0.215  Sum_probs=49.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +...++|+|+|. |.+|..++..|...|.  +|+.+|+++......  .....    ..    .++++++++||+|+.+.
T Consensus       208 ~L~GktVgIiG~-G~IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~A--~~~G~----~~----~sL~eal~~ADVVilt~  274 (436)
T 3h9u_A          208 MIAGKTACVCGY-GDVGKGCAAALRGFGA--RVVVTEVDPINALQA--AMEGY----QV----LLVEDVVEEAHIFVTTT  274 (436)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH--HHTTC----EE----CCHHHHTTTCSEEEECS
T ss_pred             cccCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCChhhhHHH--HHhCC----ee----cCHHHHHhhCCEEEECC
Confidence            334469999999 9999999999999998  999999975322111  11111    11    25789999999999875


Q ss_pred             CC
Q 028437          105 GV  106 (209)
Q Consensus       105 g~  106 (209)
                      +.
T Consensus       275 gt  276 (436)
T 3h9u_A          275 GN  276 (436)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=97.38  E-value=0.00019  Score=61.68  Aligned_cols=68  Identities=26%  Similarity=0.412  Sum_probs=49.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ...++|+|+|. |.+|+.++..|...|.  +|..+|+........+...       ..   ..++++.+++||+|+.+..
T Consensus       166 l~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~g~-------~~---~~~l~ell~~aDvV~l~~P  232 (347)
T 1mx3_A          166 IRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALGL-------QR---VSTLQDLLFHSDCVTLHCG  232 (347)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHTC-------EE---CSSHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhHhhcCC-------ee---cCCHHHHHhcCCEEEEcCC
Confidence            34469999999 9999999999999998  9999998653222221111       11   1256788999999999864


Q ss_pred             C
Q 028437          106 V  106 (209)
Q Consensus       106 ~  106 (209)
                      .
T Consensus       233 ~  233 (347)
T 1mx3_A          233 L  233 (347)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.36  E-value=0.00022  Score=61.69  Aligned_cols=71  Identities=21%  Similarity=0.403  Sum_probs=45.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ++||+|+||+|++|..|+..|.+.++ ..++.++......++...+...  ...+..    .+ .+.++++|+||.+.|
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~--~~~~~~----~~-~~~~~~~Dvvf~a~~   73 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQ--DITIEE----TT-ETAFEGVDIALFSAG   73 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTE--EEEEEE----CC-TTTTTTCSEEEECSC
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCC--CceEee----CC-HHHhcCCCEEEECCC
Confidence            46999999999999999998888754 3477777654333322222111  111111    12 245789999999875

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.36  E-value=0.0012  Score=58.16  Aligned_cols=93  Identities=16%  Similarity=0.198  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +....+|+|+|+ |.+|..++..|...|.  +|+.+|+++...... ... .    ...    .+++++++++|+|+.+.
T Consensus       217 ~L~GktV~ViG~-G~IGk~vA~~Lra~Ga--~Viv~D~dp~ra~~A-~~~-G----~~v----~~Leeal~~ADIVi~at  283 (435)
T 3gvp_A          217 MFGGKQVVVCGY-GEVGKGCCAALKAMGS--IVYVTEIDPICALQA-CMD-G----FRL----VKLNEVIRQVDIVITCT  283 (435)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHT-T----CEE----CCHHHHTTTCSEEEECS
T ss_pred             eecCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEeCChhhhHHH-HHc-C----CEe----ccHHHHHhcCCEEEECC
Confidence            344569999999 9999999999999998  999999975322111 111 1    111    25789999999999974


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      |..   +.       .|    .+.++.   ..+.+++++++.+
T Consensus       284 gt~---~l-------I~----~e~l~~---MK~gailINvgrg  309 (435)
T 3gvp_A          284 GNK---NV-------VT----REHLDR---MKNSCIVCNMGHS  309 (435)
T ss_dssp             SCS---CS-------BC----HHHHHH---SCTTEEEEECSST
T ss_pred             CCc---cc-------CC----HHHHHh---cCCCcEEEEecCC
Confidence            432   11       01    122223   2467888888866

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.36  E-value=0.00034  Score=60.22  Aligned_cols=68  Identities=22%  Similarity=0.316  Sum_probs=50.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ...++|+|+|. |.+|+.++..|...|.  +|..+|+.+.. ....++.-       ..   .+++++.+++||+|+++.
T Consensus       162 l~gktvGIIG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~g~-------~~---~~~l~ell~~aDvV~l~~  228 (351)
T 3jtm_A          162 LEGKTIGTVGA-GRIGKLLLQRLKPFGC--NLLYHDRLQMAPELEKETGA-------KF---VEDLNEMLPKCDVIVINM  228 (351)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGGCC--EEEEECSSCCCHHHHHHHCC-------EE---CSCHHHHGGGCSEEEECS
T ss_pred             ccCCEEeEEEe-CHHHHHHHHHHHHCCC--EEEEeCCCccCHHHHHhCCC-------eE---cCCHHHHHhcCCEEEECC
Confidence            34469999999 9999999999999998  99999986422 22222211       11   236789999999999986


Q ss_pred             CC
Q 028437          105 GV  106 (209)
Q Consensus       105 g~  106 (209)
                      ..
T Consensus       229 Pl  230 (351)
T 3jtm_A          229 PL  230 (351)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=97.36  E-value=0.00059  Score=58.37  Aligned_cols=71  Identities=21%  Similarity=0.287  Sum_probs=41.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      +|||+|+||+|.+|+.++..|.++++ .-+++.+......+....+...    .+...  ..+. ++++++|+||.+.|
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~----~i~~~--~~~~-~~~~~~DvV~~a~g   77 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAES----SLRVG--DVDS-FDFSSVGLAFFAAA   77 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTE----EEECE--EGGG-CCGGGCSEEEECSC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCc----ceEEe--cCCH-HHhcCCCEEEEcCC
Confidence            47999999999999999999886554 2266666432211111111111    11111  1122 33678999999875

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.34  E-value=0.00045  Score=59.26  Aligned_cols=68  Identities=21%  Similarity=0.282  Sum_probs=49.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHH-hCCCccEEEEEecCCchh-HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEE
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~-~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      ....++|+|+|. |.+|+.++..+. ..|+  +|..+|+++... ...++.       +..   ..++++.+++||+|++
T Consensus       160 ~l~g~~vgIIG~-G~IG~~vA~~l~~~~G~--~V~~~d~~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvVil  226 (348)
T 2w2k_A          160 NPRGHVLGAVGL-GAIQKEIARKAVHGLGM--KLVYYDVAPADAETEKALG-------AER---VDSLEELARRSDCVSV  226 (348)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEEEE-CHHHHHHHHHHHHhcCC--EEEEECCCCcchhhHhhcC-------cEE---eCCHHHHhccCCEEEE
Confidence            344469999999 999999999999 8898  999999975321 111111       111   1356788899999999


Q ss_pred             cCC
Q 028437          103 PAG  105 (209)
Q Consensus       103 ~ag  105 (209)
                      ++.
T Consensus       227 ~vp  229 (348)
T 2w2k_A          227 SVP  229 (348)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            864

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.32  E-value=0.00035  Score=55.96  Aligned_cols=100  Identities=15%  Similarity=0.072  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeE-eecCCchhhh-cCCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQA-LEDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a-~~~aD~Vi~~a  104 (209)
                      ..++|+|+|+ |.+|+.++..|...|+   |+++|+++...  ..+. .... .+.. ....+.++++ +++||.||.+.
T Consensus         8 ~~~~viI~G~-G~~G~~la~~L~~~g~---v~vid~~~~~~--~~~~-~~~~-~i~gd~~~~~~l~~a~i~~ad~vi~~~   79 (234)
T 2aef_A            8 KSRHVVICGW-SESTLECLRELRGSEV---FVLAEDENVRK--KVLR-SGAN-FVHGDPTRVSDLEKANVRGARAVIVDL   79 (234)
T ss_dssp             --CEEEEESC-CHHHHHHHHHSTTSEE---EEEESCGGGHH--HHHH-TTCE-EEESCTTCHHHHHHTTCTTCSEEEECC
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHhCCe---EEEEECCHHHH--HHHh-cCCe-EEEcCCCCHHHHHhcCcchhcEEEEcC
Confidence            4468999999 9999999999988774   88898875322  2222 1111 1111 0001123344 88999999985


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeE-EEEecCCCC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI-VNMISNPVN  149 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~-viv~snP~~  149 (209)
                      +.         +  ..|.    .++..+++.+|+.. +.-+.+|-.
T Consensus        80 ~~---------d--~~n~----~~~~~a~~~~~~~~iia~~~~~~~  110 (234)
T 2aef_A           80 ES---------D--SETI----HCILGIRKIDESVRIIAEAERYEN  110 (234)
T ss_dssp             SC---------H--HHHH----HHHHHHHHHCSSSEEEEECSSGGG
T ss_pred             CC---------c--HHHH----HHHHHHHHHCCCCeEEEEECCHhH
Confidence            31         1  3343    34455666788744 444566654

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=97.32  E-value=0.00053  Score=59.30  Aligned_cols=66  Identities=18%  Similarity=0.341  Sum_probs=48.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ...++|+|+|. |.+|+.++..+...|.  +|..+|+........+.   .    +..    .++++.+++||+|+++..
T Consensus       174 l~gktvGIIGl-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~~P  239 (365)
T 4hy3_A          174 IAGSEIGIVGF-GDLGKALRRVLSGFRA--RIRVFDPWLPRSMLEEN---G----VEP----ASLEDVLTKSDFIFVVAA  239 (365)
T ss_dssp             SSSSEEEEECC-SHHHHHHHHHHTTSCC--EEEEECSSSCHHHHHHT---T----CEE----CCHHHHHHSCSEEEECSC
T ss_pred             cCCCEEEEecC-CcccHHHHHhhhhCCC--EEEEECCCCCHHHHhhc---C----eee----CCHHHHHhcCCEEEEcCc
Confidence            34469999999 9999999999988898  99999986432222111   1    111    257889999999999864

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=97.31  E-value=0.00029  Score=60.86  Aligned_cols=76  Identities=20%  Similarity=0.269  Sum_probs=45.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-HHhhc----CCCC-----CcceeEeecCCchhhhc
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVG----HINT-----RSEVAGYMGNDQLGQAL   94 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-~~dl~----~~~~-----~~~v~~~~~~~d~~~a~   94 (209)
                      |.+++||+|+||+|++|..+...|.....+ ++..+......++ ..+..    +...     ...+..    .+ .+.+
T Consensus         4 M~~~~kVaIvGATGyvG~eLlrlL~~hP~~-el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~----~~-~~~~   77 (359)
T 4dpk_A            4 MRRTLKAAILGATGLVGIEYVRMLSNHPYI-KPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP----TD-PKLM   77 (359)
T ss_dssp             --CCEEEEETTTTSTTHHHHHHHHTTCSSE-EEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE----CC-GGGC
T ss_pred             CCCCCeEEEECCCCHHHHHHHHHHHhCCCc-eEEEEECchhcCCChhHhcccccccccccccccceEEe----CC-HHHh
Confidence            445679999999999999999987776543 7777755432222 11211    1011     112221    12 2457


Q ss_pred             CCCCEEEEcCCC
Q 028437           95 EDSDVVIIPAGV  106 (209)
Q Consensus        95 ~~aD~Vi~~ag~  106 (209)
                      .++|+||.+.+.
T Consensus        78 ~~vDvvf~a~p~   89 (359)
T 4dpk_A           78 DDVDIIFSPLPQ   89 (359)
T ss_dssp             TTCCEEEECCCT
T ss_pred             cCCCEEEECCCh
Confidence            899999998653

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=97.31  E-value=0.00029  Score=60.86  Aligned_cols=76  Identities=20%  Similarity=0.269  Sum_probs=45.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-HHhhc----CCCC-----CcceeEeecCCchhhhc
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVG----HINT-----RSEVAGYMGNDQLGQAL   94 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-~~dl~----~~~~-----~~~v~~~~~~~d~~~a~   94 (209)
                      |.+++||+|+||+|++|..+...|.....+ ++..+......++ ..+..    +...     ...+..    .+ .+.+
T Consensus         4 M~~~~kVaIvGATGyvG~eLlrlL~~hP~~-el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~----~~-~~~~   77 (359)
T 4dpl_A            4 MRRTLKAAILGATGLVGIEYVRMLSNHPYI-KPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP----TD-PKLM   77 (359)
T ss_dssp             --CCEEEEETTTTSTTHHHHHHHHTTCSSE-EEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE----CC-GGGC
T ss_pred             CCCCCeEEEECCCCHHHHHHHHHHHhCCCc-eEEEEECchhcCCChhHhcccccccccccccccceEEe----CC-HHHh
Confidence            445679999999999999999987776543 7777755432222 11211    1011     112221    12 2457


Q ss_pred             CCCCEEEEcCCC
Q 028437           95 EDSDVVIIPAGV  106 (209)
Q Consensus        95 ~~aD~Vi~~ag~  106 (209)
                      .++|+||.+.+.
T Consensus        78 ~~vDvvf~a~p~   89 (359)
T 4dpl_A           78 DDVDIIFSPLPQ   89 (359)
T ss_dssp             TTCCEEEECCCT
T ss_pred             cCCCEEEECCCh
Confidence            899999998653

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.30  E-value=0.00017  Score=64.40  Aligned_cols=76  Identities=20%  Similarity=0.228  Sum_probs=48.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC-CCccEEEEEecCCchhHHHhhcCCCCCcceeEee--cCCchhhhcCCCCEEE
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVI  101 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~-g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~--~~~d~~~a~~~aD~Vi  101 (209)
                      ..+++||+|+|| |.+|+.++..|++. +.  +|+++++++.+..  ++.... ........  ..+++.++++++|+||
T Consensus        20 ~l~~k~VlIiGA-GgiG~aia~~L~~~~g~--~V~v~~R~~~ka~--~la~~~-~~~~~~~D~~d~~~l~~~l~~~DvVI   93 (467)
T 2axq_A           20 RHMGKNVLLLGS-GFVAQPVIDTLAANDDI--NVTVACRTLANAQ--ALAKPS-GSKAISLDVTDDSALDKVLADNDVVI   93 (467)
T ss_dssp             ---CEEEEEECC-STTHHHHHHHHHTSTTE--EEEEEESSHHHHH--HHHGGG-TCEEEECCTTCHHHHHHHHHTSSEEE
T ss_pred             CCCCCEEEEECC-hHHHHHHHHHHHhCCCC--eEEEEECCHHHHH--HHHHhc-CCcEEEEecCCHHHHHHHHcCCCEEE
Confidence            334568999998 99999999999987 66  8999999753222  222110 11110111  1124567788999999


Q ss_pred             EcCCC
Q 028437          102 IPAGV  106 (209)
Q Consensus       102 ~~ag~  106 (209)
                      ++++.
T Consensus        94 n~tp~   98 (467)
T 2axq_A           94 SLIPY   98 (467)
T ss_dssp             ECSCG
T ss_pred             ECCch
Confidence            99764

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.29  E-value=0.0025  Score=47.38  Aligned_cols=62  Identities=16%  Similarity=0.239  Sum_probs=42.6

Q ss_pred             CCCeEEEEcCC---CchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           27 PDRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        27 ~~~kI~IiGas---G~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      ++.+|+|+|+|   |.+|..++..|.+.|+  +|+-++...     .++..      +..+   .++++..+++|+++++
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~--~V~~vnp~~-----~~i~G------~~~~---~s~~el~~~vDlvii~   76 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNY-----DEIEG------LKCY---RSVRELPKDVDVIVFV   76 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTC-----SEETT------EECB---SSGGGSCTTCCEEEEC
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCCC--EEEEeCCCC-----CeECC------eeec---CCHHHhCCCCCEEEEE
Confidence            45699999997   8999999999999999  766665532     11111      1111   2455666789999998


Q ss_pred             C
Q 028437          104 A  104 (209)
Q Consensus       104 a  104 (209)
                      .
T Consensus        77 v   77 (138)
T 1y81_A           77 V   77 (138)
T ss_dssp             S
T ss_pred             e
Confidence            5

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.27  E-value=0.00052  Score=58.36  Aligned_cols=69  Identities=17%  Similarity=0.263  Sum_probs=50.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ....++|+|+|. |.+|+.++..|...|+  +|..+|+++....  ......    +..   . ++++.+++||+|+.++
T Consensus       152 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~--~~~~~g----~~~---~-~l~e~l~~aDvVi~~v  218 (330)
T 2gcg_A          152 GLTQSTVGIIGL-GRIGQAIARRLKPFGV--QRFLYTGRQPRPE--EAAEFQ----AEF---V-STPELAAQSDFIVVAC  218 (330)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTC--CEEEEESSSCCHH--HHHTTT----CEE---C-CHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcchh--HHHhcC----cee---C-CHHHHHhhCCEEEEeC
Confidence            344579999999 9999999999999998  9999998653211  111111    111   2 5678889999999996


Q ss_pred             CC
Q 028437          105 GV  106 (209)
Q Consensus       105 g~  106 (209)
                      ..
T Consensus       219 p~  220 (330)
T 2gcg_A          219 SL  220 (330)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.27  E-value=0.00095  Score=55.17  Aligned_cols=69  Identities=14%  Similarity=0.281  Sum_probs=50.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      .++|+|+|+ |.+|+.++..|.+.|.  +|.++|+++.  ...++....   .+..   .+++++.++++|+||.+....
T Consensus       129 ~~~v~iiGa-G~~g~aia~~L~~~g~--~V~v~~r~~~--~~~~l~~~~---g~~~---~~~~~~~~~~aDiVi~atp~~  197 (275)
T 2hk9_A          129 EKSILVLGA-GGASRAVIYALVKEGA--KVFLWNRTKE--KAIKLAQKF---PLEV---VNSPEEVIDKVQVIVNTTSVG  197 (275)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSHH--HHHHHTTTS---CEEE---CSCGGGTGGGCSEEEECSSTT
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHcCC--EEEEEECCHH--HHHHHHHHc---CCee---ehhHHhhhcCCCEEEEeCCCC
Confidence            369999999 9999999999999997  9999999743  222333221   1222   225677889999999997654

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=97.26  E-value=0.00013  Score=62.00  Aligned_cols=65  Identities=22%  Similarity=0.311  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ..++|+|+|. |.+|+.++..|...|+  +|..+|+++...     ..      +.......++++.+++||+|+++..
T Consensus       138 ~g~tvGIiG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~-----~~------~~~~~~~~~l~ell~~aDiV~l~~P  202 (315)
T 3pp8_A          138 EEFSVGIMGA-GVLGAKVAESLQAWGF--PLRCWSRSRKSW-----PG------VESYVGREELRAFLNQTRVLINLLP  202 (315)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSCCCC-----TT------CEEEESHHHHHHHHHTCSEEEECCC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCchhh-----hh------hhhhcccCCHHHHHhhCCEEEEecC
Confidence            3469999999 9999999999999999  999999864211     00      1111111367888999999999853

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.26  E-value=0.00064  Score=58.59  Aligned_cols=74  Identities=19%  Similarity=0.208  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCCCccee-EeecCCchhhhcCCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVA-GYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +.++|+|+|+ |.+|..++..+...|.  +|+++|+++... ...+....    .+. ......++++.++++|+||.++
T Consensus       165 ~~~~V~ViGa-G~iG~~~a~~l~~~Ga--~V~~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~l~~~~~~~DvVi~~~  237 (369)
T 2eez_A          165 APASVVILGG-GTVGTNAAKIALGMGA--QVTILDVNHKRLQYLDDVFGG----RVITLTATEANIKKSVQHADLLIGAV  237 (369)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTTT----SEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHhcCc----eEEEecCCHHHHHHHHhCCCEEEECC
Confidence            3479999999 9999999999999998  999999975321 11111111    111 1111235667788999999998


Q ss_pred             CCC
Q 028437          105 GVP  107 (209)
Q Consensus       105 g~~  107 (209)
                      +.+
T Consensus       238 g~~  240 (369)
T 2eez_A          238 LVP  240 (369)
T ss_dssp             C--
T ss_pred             CCC
Confidence            765

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=97.26  E-value=0.0015  Score=56.54  Aligned_cols=70  Identities=19%  Similarity=0.329  Sum_probs=44.3

Q ss_pred             CeEEEEcCCCchHHHHHH-HHHhCCC-ccEEEEEecCCchhHH-HhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLAL-LMKLNPL-VSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~-~L~~~g~-~~ev~l~D~~~~~~~~-~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |||+|+||||++|+.++. .|.++++ ..++.++.... .+.. .++....  ..+..   .++. +.++++|+||.+.|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~~--~~~~~---~~~~-~~~~~~Dvvf~a~~   73 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKDA--GMLHD---AFDI-ESLKQLDAVITCQG   73 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSCC--CBCEE---TTCH-HHHTTCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCCc--eEEEe---cCCh-hHhccCCEEEECCC
Confidence            699999999999999998 7777663 24777776533 2221 1222111  12221   1232 45789999999865

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.24  E-value=0.0017  Score=54.41  Aligned_cols=74  Identities=16%  Similarity=0.140  Sum_probs=44.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEE-EEecCCch--h-HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEE
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTP--G-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~-l~D~~~~~--~-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi  101 (209)
                      ..++||+|+||+|.+|+.++..+.+..-+ +++ .+|++...  + .+.++.... ...+..   +.|+++.+.++|+||
T Consensus        19 ~~~irV~V~Ga~GrMGr~i~~~v~~~~~~-eLvg~vd~~~~~~~G~d~gel~G~~-~~gv~v---~~dl~~ll~~aDVvI   93 (288)
T 3ijp_A           19 PGSMRLTVVGANGRMGRELITAIQRRKDV-ELCAVLVRKGSSFVDKDASILIGSD-FLGVRI---TDDPESAFSNTEGIL   93 (288)
T ss_dssp             --CEEEEESSTTSHHHHHHHHHHHTCSSE-EEEEEBCCTTCTTTTSBGGGGTTCS-CCSCBC---BSCHHHHTTSCSEEE
T ss_pred             cCCeEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCCccccccchHHhhccC-cCCcee---eCCHHHHhcCCCEEE
Confidence            45679999998899999999988765432 544 44664311  1 112222111 111221   357888889999998


Q ss_pred             EcC
Q 028437          102 IPA  104 (209)
Q Consensus       102 ~~a  104 (209)
                      -..
T Consensus        94 DFT   96 (288)
T 3ijp_A           94 DFS   96 (288)
T ss_dssp             ECS
T ss_pred             EcC
Confidence            653

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.23  E-value=0.00044  Score=59.22  Aligned_cols=73  Identities=16%  Similarity=0.289  Sum_probs=43.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC---chhHH-Hh----hcCCCCCcceeEeecCCchhhhcCCCCE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVA-AD----VGHINTRSEVAGYMGNDQLGQALEDSDV   99 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~---~~~~~-~d----l~~~~~~~~v~~~~~~~d~~~a~~~aD~   99 (209)
                      |+||+|+||+|.+|..++..|.....+ ++..+....   ..++. .+    +... ....+...   .+.++.++++|+
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~-el~~l~s~~~~~saGk~~~~~~p~~~~~-~~~~v~~~---~~~~~~~~~~Dv   78 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHM-NITALTVSAQSNDAGKLISDLHPQLKGI-VELPLQPM---SDISEFSPGVDV   78 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTSBHHHHCGGGTTT-CCCBEEEE---SSGGGTCTTCSE
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCC-cEEEEEecCchhhcCCchHHhCccccCc-cceeEecc---CCHHHHhcCCCE
Confidence            579999999999999999988885543 777665432   22221 11    2211 01122211   023332389999


Q ss_pred             EEEcCC
Q 028437          100 VIIPAG  105 (209)
Q Consensus       100 Vi~~ag  105 (209)
                      ||.+.+
T Consensus        79 vf~a~p   84 (337)
T 3dr3_A           79 VFLATA   84 (337)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            999864

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=97.22  E-value=0.0018  Score=56.19  Aligned_cols=71  Identities=15%  Similarity=0.303  Sum_probs=44.9

Q ss_pred             CCeEEEEcCCCchHHHHHH-HHHhCCC-ccEEEEEecCCchhHH-HhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLAL-LMKLNPL-VSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~-~L~~~g~-~~ev~l~D~~~~~~~~-~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ++||+|+||||++|+.|+. .|.++++ ..++.++... ..+.. .++....  ..+..   .++. +.++++|+||.+.
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG~~~~~~~~~~--~~v~~---~~~~-~~~~~vDvvf~a~   76 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAGGKAPSFAKNE--TTLKD---ATSI-DDLKKCDVIITCQ   76 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTTSBCCTTCCSC--CBCEE---TTCH-HHHHTCSEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcCCCHHHcCCCc--eEEEe---CCCh-hHhcCCCEEEECC
Confidence            4799999999999999998 7777663 2377777654 22221 2232211  12221   1232 4578999999986


Q ss_pred             C
Q 028437          105 G  105 (209)
Q Consensus       105 g  105 (209)
                      |
T Consensus        77 ~   77 (377)
T 3uw3_A           77 G   77 (377)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=97.19  E-value=0.00058  Score=57.52  Aligned_cols=62  Identities=21%  Similarity=0.284  Sum_probs=47.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ...++|+|+|. |.+|+.++..|...|+  +|..+|+++. .   +    ...    .   ..++++.+++||+|+++..
T Consensus       122 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~dr~~~-~---~----~~~----~---~~~l~ell~~aDvV~l~~P  183 (303)
T 1qp8_A          122 IQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPK-E---G----PWR----F---TNSLEEALREARAAVCALP  183 (303)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCC-C---S----SSC----C---BSCSHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcc-c---c----Ccc----c---CCCHHHHHhhCCEEEEeCc
Confidence            34579999999 9999999999999998  9999998643 1   1    100    0   1356788999999999864

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.19  E-value=0.00051  Score=58.60  Aligned_cols=67  Identities=24%  Similarity=0.365  Sum_probs=49.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      -..++|+|+|. |.+|+.++..+...|+  +|..+|+++......+..       +..    .++++.+++||+|+.++.
T Consensus       144 l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~g-------~~~----~~l~e~l~~aDiVil~vp  209 (333)
T 2d0i_A          144 LYGKKVGILGM-GAIGKAIARRLIPFGV--KLYYWSRHRKVNVEKELK-------ARY----MDIDELLEKSDIVILALP  209 (333)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCHHHHHHHT-------EEE----CCHHHHHHHCSEEEECCC
T ss_pred             CCcCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhcC-------cee----cCHHHHHhhCCEEEEcCC
Confidence            34569999999 9999999999999998  999999976432111111       111    256788899999999864


Q ss_pred             C
Q 028437          106 V  106 (209)
Q Consensus       106 ~  106 (209)
                      .
T Consensus       210 ~  210 (333)
T 2d0i_A          210 L  210 (333)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=97.19  E-value=0.00089  Score=56.76  Aligned_cols=68  Identities=21%  Similarity=0.266  Sum_probs=50.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec-CCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~-~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      ....++|+|+|. |.+|+.++..|...|.  +|+.+|+ ++......++..       ..   .+++++.+++||+|+.+
T Consensus       143 ~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g~-------~~---~~~l~ell~~aDvVil~  209 (320)
T 1gdh_A          143 KLDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASYQA-------TF---HDSLDSLLSVSQFFSLN  209 (320)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHHTC-------EE---CSSHHHHHHHCSEEEEC
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcChhhhhhcCc-------EE---cCCHHHHHhhCCEEEEe
Confidence            345579999999 9999999999998898  9999999 764322211211       11   12567889999999998


Q ss_pred             CC
Q 028437          104 AG  105 (209)
Q Consensus       104 ag  105 (209)
                      ..
T Consensus       210 ~p  211 (320)
T 1gdh_A          210 AP  211 (320)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=97.18  E-value=0.0017  Score=56.14  Aligned_cols=71  Identities=21%  Similarity=0.347  Sum_probs=43.5

Q ss_pred             CCeEEEEcCCCchHHHHHH-HHHhCCC-ccEEEEEecCCchhHHH-hhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLAL-LMKLNPL-VSRLALYDIANTPGVAA-DVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~-~L~~~g~-~~ev~l~D~~~~~~~~~-dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |+||+|+||+|++|+.++. .|.+.++ ..+++++..+. .+... .+...  ...+..   ..+. +.++++|+||.+.
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s-~G~~v~~~~g~--~i~~~~---~~~~-~~~~~~DvVf~a~   73 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ-LGQAAPSFGGT--TGTLQD---AFDL-EALKALDIIVTCQ   73 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCGGGTC--CCBCEE---TTCH-HHHHTCSEEEECS
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCC-CCCCccccCCC--ceEEEe---cCCh-HHhcCCCEEEECC
Confidence            4699999999999999999 5555553 34788876652 22211 11111  111221   1233 3367999999997


Q ss_pred             C
Q 028437          105 G  105 (209)
Q Consensus       105 g  105 (209)
                      |
T Consensus        74 g   74 (367)
T 1t4b_A           74 G   74 (367)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=97.17  E-value=0.00022  Score=60.77  Aligned_cols=65  Identities=17%  Similarity=0.232  Sum_probs=48.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ..++|+|+|. |.+|+.++..|...|.  +|..+|+.+....  .+.      ..  .. ..++++.+++||+|+++..
T Consensus       136 ~gktvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~--~~~------~~--~~-~~~l~ell~~aDvV~l~lP  200 (324)
T 3evt_A          136 TGQQLLIYGT-GQIGQSLAAKASALGM--HVIGVNTTGHPAD--HFH------ET--VA-FTATADALATANFIVNALP  200 (324)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSCCCCT--TCS------EE--EE-GGGCHHHHHHCSEEEECCC
T ss_pred             cCCeEEEECc-CHHHHHHHHHHHhCCC--EEEEECCCcchhH--hHh------hc--cc-cCCHHHHHhhCCEEEEcCC
Confidence            3469999999 9999999999999999  9999998642110  010      01  11 2357788999999999863

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=97.16  E-value=0.00052  Score=59.07  Aligned_cols=73  Identities=18%  Similarity=0.206  Sum_probs=46.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHh-----hcCCCCCcceeEeecCCchhhhcCCCCE
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAAD-----VGHINTRSEVAGYMGNDQLGQALEDSDV   99 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~d-----l~~~~~~~~v~~~~~~~d~~~a~~~aD~   99 (209)
                      ...|.||+|+||+|++|..++..|.....+ +|..+......++..+     +. .+  ..+.    ..+.++..+++|+
T Consensus        10 ~~~~~~V~IvGAtG~vG~ellrlL~~hP~~-el~~l~S~~~aG~~~~~~~p~~~-~~--l~~~----~~~~~~~~~~~Dv   81 (351)
T 1vkn_A           10 HHHMIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTL-EN--SILS----EFDPEKVSKNCDV   81 (351)
T ss_dssp             --CCEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGC-CC--CBCB----CCCHHHHHHHCSE
T ss_pred             ccceeEEEEECCCCHHHHHHHHHHHcCCCc-EEEEEeCcccccCChHHhChhhc-cC--ceEE----eCCHHHhhcCCCE
Confidence            345679999999999999999999988654 7888776433232221     22 11  1111    1133333478999


Q ss_pred             EEEcCC
Q 028437          100 VIIPAG  105 (209)
Q Consensus       100 Vi~~ag  105 (209)
                      ||++.+
T Consensus        82 vf~alp   87 (351)
T 1vkn_A           82 LFTALP   87 (351)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            999865

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.16  E-value=0.00022  Score=63.54  Aligned_cols=72  Identities=24%  Similarity=0.314  Sum_probs=47.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC-CCCcceeEee-cCCchhhh-cCCCCEEEEc
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-NTRSEVAGYM-GNDQLGQA-LEDSDVVIIP  103 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~-~~~~~v~~~~-~~~d~~~a-~~~aD~Vi~~  103 (209)
                      +.|||.|+|+ |.+|++++..|...|+  +|+++|.++..  ..++.+. +.. .+.+.. ..+-+++| +++||++|.+
T Consensus         2 ~~M~iiI~G~-G~vG~~la~~L~~~~~--~v~vId~d~~~--~~~~~~~~~~~-~i~Gd~~~~~~L~~Agi~~ad~~ia~   75 (461)
T 4g65_A            2 NAMKIIILGA-GQVGGTLAENLVGENN--DITIVDKDGDR--LRELQDKYDLR-VVNGHASHPDVLHEAGAQDADMLVAV   75 (461)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHTCSTTE--EEEEEESCHHH--HHHHHHHSSCE-EEESCTTCHHHHHHHTTTTCSEEEEC
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHHhcCcE-EEEEcCCCHHHHHhcCCCcCCEEEEE
Confidence            4689999999 9999999999999999  99999998532  2222221 111 111100 01124444 7899998876


Q ss_pred             C
Q 028437          104 A  104 (209)
Q Consensus       104 a  104 (209)
                      .
T Consensus        76 t   76 (461)
T 4g65_A           76 T   76 (461)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=97.14  E-value=0.00076  Score=57.48  Aligned_cols=64  Identities=28%  Similarity=0.404  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ..++|+|+|. |.+|+.++..+...|.  +|+.+|+.+... ..++  ..       +  ..++++.+++||+|+.+..
T Consensus       145 ~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~-~~~~--~~-------~--~~~l~ell~~aDvV~l~~p  208 (333)
T 1j4a_A          145 RDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPE-LEKK--GY-------Y--VDSLDDLYKQADVISLHVP  208 (333)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHH-HHHT--TC-------B--CSCHHHHHHHCSEEEECSC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchh-HHhh--Ce-------e--cCCHHHHHhhCCEEEEcCC
Confidence            3469999999 9999999999999998  999999975322 1121  11       0  1256788899999999864

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=96.21  E-value=6.7e-05  Score=59.47  Aligned_cols=65  Identities=17%  Similarity=0.202  Sum_probs=46.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ..|||+|+|+ |.+|..++..|.+.|+  +|.++|+++.   ...+....    +..   . +.+++++++|+||++..
T Consensus        18 ~~~~I~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~---~~~~~~~g----~~~---~-~~~~~~~~aDvVilav~   82 (201)
T 2yjz_A           18 KQGVVCIFGT-GDFGKSLGLKMLQCGY--SVVFGSRNPQ---VSSLLPRG----AEV---L-CYSEAASRSDVIVLAVH   82 (201)
Confidence            3468999999 9999999999999998  9999998642   11222111    111   2 44677889999999863

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.13  E-value=0.001  Score=56.20  Aligned_cols=69  Identities=22%  Similarity=0.418  Sum_probs=50.5

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        24 ~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      .....++|+|+|. |.+|+.++..|...|.  +|+.+|+++......+.   .    +..    .++++.+++||+|+.+
T Consensus       138 ~~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvVvl~  203 (313)
T 2ekl_A          138 LELAGKTIGIVGF-GRIGTKVGIIANAMGM--KVLAYDILDIREKAEKI---N----AKA----VSLEELLKNSDVISLH  203 (313)
T ss_dssp             CCCTTCEEEEESC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT---T----CEE----CCHHHHHHHCSEEEEC
T ss_pred             CCCCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCCcchhHHHhc---C----cee----cCHHHHHhhCCEEEEe
Confidence            3445579999999 9999999999999998  99999997543221111   1    111    1467888999999998


Q ss_pred             CCC
Q 028437          104 AGV  106 (209)
Q Consensus       104 ag~  106 (209)
                      ...
T Consensus       204 ~P~  206 (313)
T 2ekl_A          204 VTV  206 (313)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            643

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.11  E-value=0.0012  Score=56.83  Aligned_cols=75  Identities=20%  Similarity=0.222  Sum_probs=50.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      +.+|+|+|+ |.+|...+..+...|.  +|+++|+++.+. ...++.....  .... ....++.+.++++|+||.+++.
T Consensus       167 ~~~VlViGa-GgvG~~aa~~a~~~Ga--~V~v~dr~~~r~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~DvVI~~~~~  240 (361)
T 1pjc_A          167 PGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGSRV--ELLY-SNSAEIETAVAEADLLIGAVLV  240 (361)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGGS--EEEE-CCHHHHHHHHHTCSEEEECCCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhhCcee--Eeee-CCHHHHHHHHcCCCEEEECCCc
Confidence            479999999 9999999999999998  999999975321 1222211110  0111 0112456778899999999876


Q ss_pred             CC
Q 028437          107 PR  108 (209)
Q Consensus       107 ~~  108 (209)
                      +.
T Consensus       241 ~~  242 (361)
T 1pjc_A          241 PG  242 (361)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.11  E-value=0.0025  Score=56.41  Aligned_cols=68  Identities=18%  Similarity=0.231  Sum_probs=49.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +....+|+|+|. |.||+.++..+...|.  +|+.+|+++....... .. .    +..    .+++++++++|+|+.+.
T Consensus       244 ~L~GKTVgVIG~-G~IGr~vA~~lrafGa--~Viv~d~dp~~a~~A~-~~-G----~~v----v~LeElL~~ADIVv~at  310 (464)
T 3n58_A          244 MMAGKVAVVCGY-GDVGKGSAQSLAGAGA--RVKVTEVDPICALQAA-MD-G----FEV----VTLDDAASTADIVVTTT  310 (464)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHH-HT-T----CEE----CCHHHHGGGCSEEEECC
T ss_pred             cccCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEeCCcchhhHHH-hc-C----cee----ccHHHHHhhCCEEEECC
Confidence            344469999999 9999999999999998  9999998753221111 11 1    111    24678999999999876


Q ss_pred             C
Q 028437          105 G  105 (209)
Q Consensus       105 g  105 (209)
                      |
T Consensus       311 g  311 (464)
T 3n58_A          311 G  311 (464)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=97.10  E-value=0.00076  Score=58.87  Aligned_cols=68  Identities=18%  Similarity=0.193  Sum_probs=49.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      -..++|+|+|. |.||+.++..|...|.  +|..+|+.+.. ....++..       ..   ..++++.+++||+|+++.
T Consensus       189 l~gktvGIIGl-G~IG~~vA~~l~a~G~--~V~~~d~~~~~~~~~~~~G~-------~~---~~~l~ell~~aDvV~l~~  255 (393)
T 2nac_A          189 LEAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELNL-------TW---HATREDMYPVCDVVTLNC  255 (393)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHTC-------EE---CSSHHHHGGGCSEEEECS
T ss_pred             CCCCEEEEEeE-CHHHHHHHHHHHhCCC--EEEEEcCCccchhhHhhcCc-------ee---cCCHHHHHhcCCEEEEec
Confidence            34469999999 9999999999998898  99999986422 11111211       11   125678899999999986


Q ss_pred             CC
Q 028437          105 GV  106 (209)
Q Consensus       105 g~  106 (209)
                      ..
T Consensus       256 Pl  257 (393)
T 2nac_A          256 PL  257 (393)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.10  E-value=0.00015  Score=59.93  Aligned_cols=64  Identities=11%  Similarity=0.130  Sum_probs=37.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEE-EEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRL-ALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev-~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +|||+|+|+ |.+|..++..|.+. +  +| .++|+++...  ..+... ...   .   ..+++++++++|+||++.
T Consensus         2 ~m~I~iIG~-G~mG~~la~~l~~~-~--~v~~v~~~~~~~~--~~~~~~-~g~---~---~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            2 SLVLNFVGT-GTLTRFFLECLKDR-Y--EIGYILSRSIDRA--RNLAEV-YGG---K---AATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             --CCEEESC-CHHHHHHHHTTC-------CCCEECSSHHHH--HHHHHH-TCC---C---CCSSCCCCC---CEEECS
T ss_pred             CceEEEEeC-CHHHHHHHHHHHHc-C--cEEEEEeCCHHHH--HHHHHH-cCC---c---cCCHHHHHhcCCEEEEeC
Confidence            369999999 99999999988877 6  88 5899874321  122111 000   1   234566788999999985

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.10  E-value=0.00032  Score=58.23  Aligned_cols=73  Identities=22%  Similarity=0.330  Sum_probs=44.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHh-CCCccEEE-EEecCCchhHHHhhcCCC-C-CcceeEeecCCchhhhcCCCCEEEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLA-LYDIANTPGVAADVGHIN-T-RSEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~-~g~~~ev~-l~D~~~~~~~~~dl~~~~-~-~~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      ++|||+|+|++|.+|+.++..+.+ .++  +|+ ++|+++......++.... . ...+..   ++|+++.++++|+||.
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~--elva~~d~~~~~~~g~d~~~~~g~~~~~v~~---~~dl~~~l~~~DvVID   78 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGV--QLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFID   78 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTE--ECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEEE
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCC--EEEEEEecCchhhhhhhHHHHcCCCcCCcee---cCCHHHHhcCCCEEEE
Confidence            347999999999999999988774 456  766 677753211111111110 0 011222   2466777889999995


Q ss_pred             cC
Q 028437          103 PA  104 (209)
Q Consensus       103 ~a  104 (209)
                      .+
T Consensus        79 ft   80 (273)
T 1dih_A           79 FT   80 (273)
T ss_dssp             CS
T ss_pred             cC
Confidence            54

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=97.09  E-value=0.0014  Score=54.96  Aligned_cols=32  Identities=19%  Similarity=0.302  Sum_probs=29.4

Q ss_pred             CeEEEEcC--CCchHHHHHHHHHhCCCccEEEEEec
Q 028437           29 RKVAVLGA--AGGIGQPLALLMKLNPLVSRLALYDI   62 (209)
Q Consensus        29 ~kI~IiGa--sG~vG~~la~~L~~~g~~~ev~l~D~   62 (209)
                      +.++||||  +|.+|.+++..|++.|.  +|++.|+
T Consensus        10 k~~lVTGa~~s~GIG~aia~~la~~G~--~Vv~~~r   43 (319)
T 2ptg_A           10 KTAFVAGVADSNGYGWAICKLLRAAGA--RVLVGTW   43 (319)
T ss_dssp             CEEEEECCCCTTSHHHHHHHHHHHTTC--EEEEEEC
T ss_pred             CEEEEeCCCCCCcHHHHHHHHHHHCCC--EEEEEec
Confidence            57999998  89999999999999998  9999985

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.08  E-value=0.0028  Score=56.81  Aligned_cols=68  Identities=12%  Similarity=0.127  Sum_probs=50.2

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        24 ~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      .+...++|+|+|. |.+|+.++..|...|.  +|+.+|+++....  +.....    ...    .++++++++||+|+.+
T Consensus       273 ~~L~GktVgIIG~-G~IG~~vA~~l~~~G~--~V~v~d~~~~~~~--~a~~~G----~~~----~~l~ell~~aDiVi~~  339 (494)
T 3d64_A          273 VMIAGKIAVVAGY-GDVGKGCAQSLRGLGA--TVWVTEIDPICAL--QAAMEG----YRV----VTMEYAADKADIFVTA  339 (494)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSCHHHHH--HHHTTT----CEE----CCHHHHTTTCSEEEEC
T ss_pred             cccCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCChHhHH--HHHHcC----CEe----CCHHHHHhcCCEEEEC
Confidence            3455679999999 9999999999998898  9999999753211  111111    111    2578999999999998


Q ss_pred             C
Q 028437          104 A  104 (209)
Q Consensus       104 a  104 (209)
                      .
T Consensus       340 ~  340 (494)
T 3d64_A          340 T  340 (494)
T ss_dssp             S
T ss_pred             C
Confidence            6

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=97.06  E-value=0.0065  Score=55.74  Aligned_cols=115  Identities=13%  Similarity=0.148  Sum_probs=68.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC-----Ccce-eEee-cCCchhhhcCCCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----RSEV-AGYM-GNDQLGQALEDSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~-----~~~v-~~~~-~~~d~~~a~~~aD~Vi  101 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|++.......++.....     ..++ .... ......+.+...|++|
T Consensus       323 kvalVTGas~GIG~a~A~~la~~Ga--~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iDiLV  400 (604)
T 2et6_A          323 KVVLITGAGAGLGKEYAKWFAKYGA--KVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTIDILV  400 (604)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CeEEEECcchHHHHHHHHHHHHCCC--EEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCCCEEE
Confidence            3588999999999999999999999  9999987543333333332110     0111 0000 0001122345789999


Q ss_pred             EcCCCCCCC---CCCh---hHHHHHHHHHHH----HHHHHHHhhCCCeEEEEecC
Q 028437          102 IPAGVPRKP---GMTR---DDLFNINAGIVK----DLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       102 ~~ag~~~~~---g~~r---~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~sn  146 (209)
                      +.||.....   .++.   ...+..|+....    .+++.+++ ...+.||++|.
T Consensus       401 nNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~-~~~G~IVnisS  454 (604)
T 2et6_A          401 NNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVE-KQFGRIINITS  454 (604)
T ss_dssp             ECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCCEEEEECC
Confidence            999975421   2333   234666765544    44455543 34578888864

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.05  E-value=0.0015  Score=56.51  Aligned_cols=76  Identities=22%  Similarity=0.157  Sum_probs=51.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      +..+|+|+|+ |.+|..++..+...|.  +|+.+|+++... ...+......  .. ......++++.++++|+||.+++
T Consensus       167 ~g~~V~ViG~-G~iG~~~a~~a~~~Ga--~V~~~d~~~~~l~~~~~~~g~~~--~~-~~~~~~~l~~~l~~aDvVi~~~~  240 (377)
T 2vhw_A          167 EPADVVVIGA-GTAGYNAARIANGMGA--TVTVLDINIDKLRQLDAEFCGRI--HT-RYSSAYELEGAVKRADLVIGAVL  240 (377)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTTTSS--EE-EECCHHHHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhcCCee--Ee-ccCCHHHHHHHHcCCCEEEECCC
Confidence            4579999999 9999999999999998  999999975321 1222111110  11 11112246677889999999988


Q ss_pred             CCC
Q 028437          106 VPR  108 (209)
Q Consensus       106 ~~~  108 (209)
                      .+.
T Consensus       241 ~p~  243 (377)
T 2vhw_A          241 VPG  243 (377)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	3e-46
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	4e-37
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	2e-35
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	2e-32
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	8e-32
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	3e-31
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	3e-31
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	5e-31
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	3e-30
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	4e-30
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	5e-30
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	6e-29
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	2e-28
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	6e-28
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	4e-27
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	2e-26
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	2e-25
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	9e-25
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	4e-24
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	2e-23
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	3e-21
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	9e-19
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	1e-18
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	5e-17
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	4e-04
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	0.001
d1edza1	171	c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehy	0.003

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  147 bits (372), Expect = 3e-46
 Identities = 99/143 (69%), Positives = 119/143 (83%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP+A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 150 STVPIAAEVFKKAGTYNEKKLFG 172
           ST+PI AEVFKK G YN  K+FG
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFG 144

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  124 bits (312), Expect = 4e-37
 Identities = 91/145 (62%), Positives = 108/145 (74%), Gaps = 3/145 (2%)

Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFG 172
           VN+TV IAAEV KKAG Y++ KLFG
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFG 145

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  121 bits (304), Expect = 2e-35
 Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIANTPGVAADVGHINTRSE---V 81
            +AV GAAG I   L   +    +        L L     +      V      S    +
Sbjct: 26  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 85

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAI 140
                     +  ED D  ++    PR PGM R  L +IN  I  D   A+      N  
Sbjct: 86  REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVK 145

Query: 141 VNMISNPVNSTVPIAAE 157
           V ++ NP N+   I  +
Sbjct: 146 VLVVGNPCNTNALICLK 162

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  112 bits (281), Expect = 2e-32
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN 87
           K+  +GA G +G   A    LN  V  +AL DIA     G A D+ H     +    +  
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
                 L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+   I +  P + + +++NP
Sbjct: 61  GADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGV 173
           ++    I      K       ++FG+
Sbjct: 121 MDVMTYIM----WKESGKPRNEVFGM 142

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score =  110 bits (277), Expect = 8e-32
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 8/145 (5%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
           K+AV+GA G +G  LA       +   + L DIA         D+ H ++        G+
Sbjct: 3   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D   +   D+D+V+I AG  +KPG +R +L      I+K +   + K  PNAI  +I+NP
Sbjct: 62  DDP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFG 172
           V+    IA  V +K     E ++FG
Sbjct: 121 VD----IATHVAQKLTGLPENQIFG 141

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  109 bits (273), Expect = 3e-31
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 10/147 (6%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KV+V+GAAG +G      + L  +   +   DI         VG     +    Y  N +
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP--DKEDDTVGQAADTNHGIAYDSNTR 59

Query: 90  LG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145
           +     +    SDVV+I AG+PR+PG TR DL   NA I++D+ S++ ++  + I    S
Sbjct: 60  VRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119

Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           NPV+    +      +AG  + +++ G
Sbjct: 120 NPVD----LLNRHLYEAGDRSREQVIG 142

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  109 bits (274), Expect = 3e-31
 Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 9/141 (6%)

Query: 30  KVAVLGAAGGIGQPLALL-----MKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG- 83
           +V V GAAG I   L        +        L L DI    GV   V        +   
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64

Query: 84  --YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI- 140
              +  D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY   ++ 
Sbjct: 65  KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124

Query: 141 VNMISNPVNSTVPIAAEVFKK 161
           V ++ NP N+    A++    
Sbjct: 125 VIVVGNPANTNCLTASKSAPS 145

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  108 bits (271), Expect = 5e-31
 Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 7/146 (4%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMGN 87
           K+ V+GA G +G   A  +    L   L L D+      G A D+            +  
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
                   +SD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+ ++SNP
Sbjct: 61  SNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGV 173
           ++    +A           ++++ G+
Sbjct: 121 LDIMTHVA----WVRSGLPKERVIGM 142

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  106 bits (266), Expect = 3e-30
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           K+ ++G  G +G   A  + +      + L D+         +  I+             
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
               L+ SDVVI+ AGVP+KPG TR  L   NA ++K++   ++KY P++IV +++NPV+
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120

Query: 150 STVPIAAEVFKKAGTYNEKKLFG 172
               +    F K    + +K+FG
Sbjct: 121 ----VLTYFFLKESGMDPRKVFG 139

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score =  106 bits (265), Expect = 4e-30
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 11/147 (7%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-INTRSEVAGYM 85
            KVA++GA G +G   A  M L    + L L D+      G A D+ H +    +++ Y 
Sbjct: 2   SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA 60

Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145
           G+      ++D DV+++ AG  RKPG TR DL   N  I K++   I KY  + ++ ++S
Sbjct: 61  GDYS---DVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117

Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           NPV+    +     +K       K+ G
Sbjct: 118 NPVDIITYMI----QKWSGLPVGKVIG 140

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  106 bits (265), Expect = 5e-30
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 12/149 (8%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVS--RLALYDIANTPGVAADVGHINTRSE------V 81
           +VAV GAAG IG  L   +    ++   +  +  +   P     +  +    E      +
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAI 140
           AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+    +  
Sbjct: 66  AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKK 169
           V ++ NP N+   IA   +K A   N + 
Sbjct: 126 VLVVGNPANTNALIA---YKNAPGLNPRN 151

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  103 bits (257), Expect = 6e-29
 Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 6/145 (4%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGN 87
           +K++++GA G +G   A  +    L   + L  +   P G A D+   +        +  
Sbjct: 2   KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
                   +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP
Sbjct: 61  TNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFG 172
           +++   +AAEV      + ++++ G
Sbjct: 121 LDAMTYLAAEVSG----FPKERVIG 141

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  102 bits (255), Expect = 2e-28
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 13/154 (8%)

Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + L+DI      G A D  H N  +     
Sbjct: 2   PKAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L  +DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K CPNA
Sbjct: 60  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 119

Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173
            + +++NPV+  V +      +     + K+ G+
Sbjct: 120 FIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL 149

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score =  100 bits (251), Expect = 6e-28
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 6/149 (4%)

Query: 25  SVPDR-KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG 83
           S+P+  KV ++G  G +G   A  M    +     + D+         +   + ++  A 
Sbjct: 1   SMPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAP 59

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
                      +D+D+V+I AG P+KPG +R DL N N  I+  +   +     + I  +
Sbjct: 60  KKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
            +NPV+    I      K   + ++++ G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIG 144

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 99.3 bits (247), Expect = 4e-27
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 8/153 (5%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS 79
              +VP+ K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H +   
Sbjct: 14  EEATVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFL 72

Query: 80  EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +    + + +      +S +V++ AGV ++ G +R +L   N  + K +   I KY P+ 
Sbjct: 73  QTPKIVAD-KDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDC 131

Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           I+ ++SNPV+    +      K     + ++ G
Sbjct: 132 IIIVVSNPVDILTYVT----WKLSGLPKHRVIG 160

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 97.5 bits (242), Expect = 2e-26
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 12/151 (7%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGN 87
           +KVA++G+ G IG  +  L  L  L   +    +   P G A D+ H+ +  +    +  
Sbjct: 8   KKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 66

Query: 88  D-QLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           +     AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   +
Sbjct: 67  EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFI 126

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
            +++NP++  V +  E            + G
Sbjct: 127 IVVTNPLDCMVKVMCEASG----VPTNMICG 153

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.7 bits (235), Expect = 2e-25
 Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 8/151 (5%)

Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEV 81
           + +   K+ V+G  G +G   A+ + L  L   LAL D       G A D+ H +     
Sbjct: 15  DKLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLST 73

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
              +   +      +S +VII AG     G TR DL   N  I+K +   + +  P+  +
Sbjct: 74  PKIV-FGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKI 132

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
            +++NPV+    +      K   +   ++ G
Sbjct: 133 IVVTNPVDILTYVVW----KISGFPVGRVIG 159

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 92.8 bits (230), Expect = 9e-25
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 8/146 (5%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG 86
            +V V+GA G +G      +    +   + L D   +   G A D  H    +     + 
Sbjct: 7   ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW 65

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
           +        D+D+V+I AG  +KPG TR DL + N  I + +  ++       +  + +N
Sbjct: 66  HGD-YDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN 124

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFG 172
           PV+    I      K      +++ G
Sbjct: 125 PVD----ILTYATWKFSGLPHERVIG 146

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 91.0 bits (225), Expect = 4e-24
 Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 11/149 (7%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN------TRSEVAG 83
           KV ++GA+G +G   ALL+   P +  L L    ++      +          TRS+   
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
           Y+ +D+  + +++SDVVII +GVPRK GM+R DL   NA IV      IA+ C   I  +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           I+NPV+     A         +   ++FG
Sbjct: 121 ITNPVDVMTYKAL----VDSKFERNQVFG 145

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 89.4 bits (221), Expect = 2e-23
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 10/149 (6%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGN 87
           RK+ ++G  G +G  +A  +    +       D       A  +   +  + +  +    
Sbjct: 2   RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV 60

Query: 88  DQLGQALEDSDVVIIPAGVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
                AL D+DVVI   G  +     P   R       + +V+ + + + +   + ++ +
Sbjct: 61  INDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV 120

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           ISNPV+    +   +F+    +   K+ G
Sbjct: 121 ISNPVD----VITALFQHVTGFPAHKVIG 145

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 84.0 bits (207), Expect = 3e-21
 Identities = 23/167 (13%), Positives = 47/167 (28%), Gaps = 32/167 (19%)

Query: 30  KVAVLGAAGGIGQPLALLM----KLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGY 84
           ++AV+G  G    P  +        +  +  +  YDI      +  D      +      
Sbjct: 2   RIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL 60

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA----------- 133
           + +     A+ D+  VI         G   D+   +  G++    + +            
Sbjct: 61  ISDT-FEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPI 119

Query: 134 --------KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
                   +   NA +   +NP         E  +       +K  G
Sbjct: 120 VEEYVDTVRKTSNATIVNFTNPSG----HITEFVRNY--LEYEKFIG 160

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 77.4 bits (190), Expect = 9e-19
 Identities = 31/165 (18%), Positives = 51/165 (30%), Gaps = 30/165 (18%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDI----ANTPGVAADVGHINTRSEV 81
            + + G  G    P   L LL  L    + +L LYD      +    A DV       ++
Sbjct: 5   SIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDI 63

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV---------------- 125
                 D   +A  D D V+    V +      D+   +  G+V                
Sbjct: 64  EFAATTDP-EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRS 122

Query: 126 ----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYN 166
                ++   + KY P+A +   SNP          +   +   N
Sbjct: 123 IGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNSKILN 167

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 77.0 bits (189), Expect = 1e-18
 Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 30/161 (18%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDIANTP--GVAADVGH---INTRSE 80
           K+A +G  G    P     L+ + + L V  L L DI                 +     
Sbjct: 3   KIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV 61

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV--------------- 125
                      +AL+ +D V     V       +D+   +  G++               
Sbjct: 62  PIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLR 121

Query: 126 -----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKK 161
                 D+   + + CP+A +   +NP            K+
Sbjct: 122 TIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQ 162

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 73.3 bits (179), Expect = 5e-17
 Identities = 28/167 (16%), Positives = 43/167 (25%), Gaps = 34/167 (20%)

Query: 27  PDRKVAVLGAAGGIGQPLAL---LMKLNPL-VSRLALYDIA--NTPGVAADVGH-INTRS 79
           P  K+ ++GA G     L L   L K   L  S + L DI       +       +    
Sbjct: 1   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 59

Query: 80  EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI------------------- 120
               +     L   + D+D VI  A V     + +                         
Sbjct: 60  ADLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDY 119

Query: 121 -------NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK 160
                        D+   I K  P A     +NP+     +      
Sbjct: 120 YTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVP 166

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 173 VTTLDVVRAKTFYAGKANVNVA 194
           VTTLD++R+ TF A        
Sbjct: 1   VTTLDIIRSNTFVAELKGKQPG 22

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 173 VTTLDVVRAKTFYAGKANVNVA 194
           VTTLD+VRA  F A    ++ A
Sbjct: 1   VTTLDIVRANAFVAELKGLDPA 22

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 3/118 (2%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
               +  +K  V+  +  +G+PLA L+  +         +          +       E 
Sbjct: 23  EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVED 82

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPR---KPGMTRDDLFNINAGIVKDLCSAIAKYC 136
            G    D L +   DSDVVI               ++    IN    K+    + +  
Sbjct: 83  LGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNFSDDVKEKA 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	99.97
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.97
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	99.97
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	99.97
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	99.97
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.97
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	99.97
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.97
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.97
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.97
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	99.97
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.96
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.96
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.96
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.96
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.96
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.95
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.95
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.95
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.9
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.88
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.88
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.86
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.59
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.2
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.2
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.18
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	99.16
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.14
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.11
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.06
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.04
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	99.02
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.02
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	99.0
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	98.96
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.95
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.92
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	98.91
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.89
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.85
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	98.85
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.81
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.79
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.78
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	98.78
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	98.78
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.78
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	98.76
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	98.76
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.74
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.71
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.69
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	98.67
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	98.66
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	98.64
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	98.64
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	98.59
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	98.58
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.47
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	98.43
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	98.43
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.43
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	98.35
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	98.34
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.32
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.32
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.28
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.24
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.23
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.23
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.21
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.2
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	98.17
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	98.17
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	98.15
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	98.15
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.13
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.09
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	98.05
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	98.04
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	98.04
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	98.01
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.99
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.98
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.96
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.95
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.95
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.95
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.93
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.93
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.93
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.92
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.91
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.91
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.9
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.89
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.87
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.87
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.86
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.85
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.85
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.85
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.85
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	97.85
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.84
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.84
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.84
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.83
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.83
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.81
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.8
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.79
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.79
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.77
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.76
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.72
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.71
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.69
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.69
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	97.69
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.69
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.68
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.67
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.63
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.62
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.61
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	97.61
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.61
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.59
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.58
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	97.58
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.53
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	97.5
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.47
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.45
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.44
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.44
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.42
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.42
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.41
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.41
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.38
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.35
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.35
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	97.3
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	97.3
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	97.3
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.27
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.27
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	97.25
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.24
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	97.21
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.21
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.2
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	97.19
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.18
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.18
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.11
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	97.1
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.08
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.98
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.97
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.94
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.93
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	96.9
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.84
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.81
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	96.78
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.78
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.77
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	96.77
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.75
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.69
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.66
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.66
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.62
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.54
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.54
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.53
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	96.53
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.5
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	96.48
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.46
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.46
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.44
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.43
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.39
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	96.39
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.39
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	96.38
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.37
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.36
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.36
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.35
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	96.3
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.29
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.29
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	96.28
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.22
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.21
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.2
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.2
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.17
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.15
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.15
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.14
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.1
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	96.06
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	96.0
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.97
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.91
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	95.91
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.91
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.9
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.87
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.81
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	95.79
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.78
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.78
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.76
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.74
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.74
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.71
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.71
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.69
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.66
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	95.62
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.55
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	95.53
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.51
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.49
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.49
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	95.47
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.43
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	95.43
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	95.39
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.38
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	95.32
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.32
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.26
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	95.24
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.23
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.18
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.16
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.16
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.12
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.12
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.06
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	95.0
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.98
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	94.97
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	94.97
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.91
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.9
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.88
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.8
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	94.63
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.58
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	94.56
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.52
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	94.42
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	94.38
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	94.35
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.32
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.31
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.11
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.11
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	93.83
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	93.77
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.74
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	93.67
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	93.64
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	93.5
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	93.38
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	93.34
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	93.27
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	93.2
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	93.13
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	93.05
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.04
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	92.93
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	92.91
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	92.88
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	92.78
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	92.71
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	92.7
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	92.59
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	92.51
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	92.28
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	92.26
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.23
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	92.21
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	92.07
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	92.0
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	91.93
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.85
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	91.77
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	91.73
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	91.39
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	91.16
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	90.98
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.92
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	90.82
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	90.81
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	90.67
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	90.41
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	90.14
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.13
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	90.07
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	90.04
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.91
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	89.86
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	89.73
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	89.72
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	89.66
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.81
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	88.78
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	88.78
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	88.53
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	88.36
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.18
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	87.83
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	87.75
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	87.7
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	87.65
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.37
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	87.28
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	86.69
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	86.68
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	86.32
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	86.2
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	86.13
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	85.94
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	85.87
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	85.8
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	85.77
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	85.71
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	84.85
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	83.58
d1ls1a2	207	GTPase domain of the signal sequence recognition p	83.46
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	83.43
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	83.33
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	83.19
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	82.81
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	82.41
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	81.35
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	81.25
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	80.91
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	80.76

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=9.7e-33  Score=209.73  Aligned_cols=143  Identities=69%  Similarity=1.112  Sum_probs=131.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRK  109 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~~  109 (209)
                      ||+|+||+|.||+++++.|+.+++++|++|+|.++.+++++|+.|............+.+.++++++||+||+++|.+++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~   81 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence            89999988999999999999999999999999988888899999987655444444455678999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 028437          110 PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (209)
Q Consensus       110 ~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig  172 (209)
                      +|++|.+++..|.++++++++++.+++|+++++++|||+|.+++++.+.+++.++||++|+||
T Consensus        82 ~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          82 PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            999999999999999999999999999999999999999998888888889999999999998

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.97  E-value=1.1e-31  Score=203.53  Aligned_cols=140  Identities=33%  Similarity=0.507  Sum_probs=123.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |.||+|||+ |+||+++++.|+.+++++|++|+|+++  .+++++|+.|............+++ ++++++||+||+++|
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~-~~~~~daDvVVitaG   78 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAG   78 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCC-HHHhhCCcEEEEecc
Confidence            469999998 999999999999999999999999986  5678889999753221112222345 478999999999999


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~  173 (209)
                      .+++++++|.|++..|.++++++++.+.+++|+++++++|||+|    +|++++++.++||++|+||+
T Consensus        79 ~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvD----vmt~~~~~~sg~p~~rViG~  142 (143)
T d1llda1          79 PRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATHVAQKLTGLPENQIFGS  142 (143)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH----HHHHHHHHHHTCCTTSEEEC
T ss_pred             cccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchH----HHHHHHHHHHCCChhhccCC
Confidence            99999999999999999999999999999999999999999999    88999999999999999997

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2e-31  Score=202.64  Aligned_cols=143  Identities=64%  Similarity=0.984  Sum_probs=127.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEecCC-chhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~-~g~~~ev~l~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      |||+|+|++|+||+++++.|+. .+..+|++|+|.++ .++.++|+.|.........+..+++ +++++|+|+||+++|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~-~~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDA-TPALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCC-HHHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCC-ccccCCCCEEEECCCc
Confidence            7999999779999999998865 57788999999975 4678899999876655555544555 5789999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig  172 (209)
                      ++++|++|.+++..|.++++++++++.+++|++.++++|||+|.+++++.+++++.++||++|+||
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            999999999999999999999999999999999999999999988888888888889999999998

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=3.4e-31  Score=202.12  Aligned_cols=138  Identities=25%  Similarity=0.355  Sum_probs=122.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCC--cceeEeecCCchhhhcCCCCEEEEc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      ..||+|+|| |+||+++++.|++.++++||+|+|+++  .++++.||.|....  ......  +.+ +++++|||+||++
T Consensus         6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~--~~d-~~~l~daDvvvit   81 (148)
T d1ldna1           6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW--HGD-YDDCRDADLVVIC   81 (148)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEE--ECC-GGGTTTCSEEEEC
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEE--ECC-HHHhccceeEEEe
Confidence            359999998 999999999999999999999999976  46788899987532  222222  345 5889999999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~  173 (209)
                      +|.+++++++|.|++..|.++++++++.+.+++|+++++++|||+|    ++++++++.+|||++||||+
T Consensus        82 ag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd----~~t~~~~k~sg~p~~rViG~  147 (148)
T d1ldna1          82 AGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTYATWKFSGLPHERVIGS  147 (148)
T ss_dssp             CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHH----HHHHHHHHHHTCCGGGEEEC
T ss_pred             cccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccH----HHHHHHHHHHCcChhheecC
Confidence            9999999999999999999999999999999999999999999999    88889999999999999996

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.97  E-value=1.5e-30  Score=200.57  Aligned_cols=145  Identities=27%  Similarity=0.439  Sum_probs=125.6

Q ss_pred             cCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCCcceeEeecCCchhhhcCCCCE
Q 028437           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDV   99 (209)
Q Consensus        22 ~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~   99 (209)
                      .+...+..||+|+|+ |.||+++++.|+.+|+++|++|+|+++  .+++++||.|..............+ ++++++||+
T Consensus        14 ~~~~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d-~~~~~~adi   91 (160)
T d1i0za1          14 EEATVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD-YSVTANSKI   91 (160)
T ss_dssp             SCCCCCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS-GGGGTTCSE
T ss_pred             ccccCCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc-hhhcccccE
Confidence            344455579999998 999999999999999999999999975  5678899998653211111122345 588999999


Q ss_pred             EEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 028437          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (209)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig  172 (209)
                      ||++||.++++|++|.+++..|.++++++++.+.+++|+++++++|||+|    ++++++++.++||++||||
T Consensus        92 VVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvD----v~t~~~~k~sglp~~rViG  160 (160)
T d1i0za1          92 VVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYVTWKLSGLPKHRVIG  160 (160)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEEE
T ss_pred             EEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchH----HHHHHHHHHHCcCcccccC
Confidence            99999999999999999999999999999999999999999999999999    8888999999999999998

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.97  E-value=5.1e-31  Score=199.74  Aligned_cols=138  Identities=33%  Similarity=0.532  Sum_probs=122.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCC--CcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||+|+|+ |.||+++++.|+.+++++|++|+|+++  .+++++||.|...  +...+. ..++| +++++++|+||+++
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i-~~~~d-~~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKI-VGGAD-YSLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEE-EEESC-GGGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCcc-ccCCC-HHHhccccEEEEec
Confidence            79999998 999999999999999999999999986  4678899998642  211122 12346 47999999999999


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~  173 (209)
                      |.++++|++|.+++.+|.++++++++.+.+++|+++++++|||+|    ++++++++.++||++|+||+
T Consensus        78 g~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD----~~t~~~~k~sg~p~~rViG~  142 (142)
T d1ojua1          78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD----VMTYIMWKESGKPRNEVFGM  142 (142)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHH----HHHHHHHHHSCCCTTSEEEC
T ss_pred             cccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChH----HHHHHHHHHHCCChhcEecC
Confidence            999999999999999999999999999999999999999999999    78888999999999999995

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=7.7e-31  Score=198.35  Aligned_cols=137  Identities=32%  Similarity=0.571  Sum_probs=120.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCC-CcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |||+|+|| |.||+++++.|+.+++.+||+|+|+++  .++++.|+.+... .......  +.+ +++++|||+||+++|
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~--~~~-~~~~~~adivvitag   76 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY--AGD-YADLKGSDVVIVAAG   76 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE--ECC-GGGGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccccccccccc--CCc-HHHhcCCCEEEEecc
Confidence            79999998 999999999999999999999999975  4667788887542 1222222  234 578999999999999


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~  173 (209)
                      .++++|++|.|++..|.++++++++.+.+++|+++++++|||+|    ++++++++.++||++|+||+
T Consensus        77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd----~~t~~~~k~sg~p~~rViGt  140 (140)
T d1a5za1          77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD----VLTYFFLKESGMDPRKVFGS  140 (140)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHTCCTTTEEEC
T ss_pred             cccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHH----HHHHHHHHHHCcCccceeCc
Confidence            99999999999999999999999999999999999999999999    78888999999999999995

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.97  E-value=2.6e-30  Score=195.86  Aligned_cols=137  Identities=33%  Similarity=0.484  Sum_probs=115.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCC-cceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      .||+|+|| |+||+++++.|+.+++++||+|+|+++  .+++++||.|.... ......  +.+ ++++++||+||+++|
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~--~~~-~~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY--AGD-YSDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEe--eCc-HHHhCCCceEEEecc
Confidence            49999998 999999999999999999999999875  57889999997532 223322  234 588999999999999


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~  173 (209)
                      .+++++++|.+++.+|.++++++++++.+++|+++++++|||+|    ++++++++.++||++|+||+
T Consensus        78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvd----v~t~~~~k~sg~p~~rViG~  141 (142)
T d1y6ja1          78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD----IITYMIQKWSGLPVGKVIGS  141 (142)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHH----HHHHHHHHHHTCCTTTEEEC
T ss_pred             cccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHH----HHHHHHHHHHCCCccceecC
Confidence            99999999999999999999999999999999999999999999    88889999999999999996

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.97  E-value=7.6e-31  Score=199.66  Aligned_cols=141  Identities=26%  Similarity=0.428  Sum_probs=114.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCCc-ceeEeecCCchhhhcCCCCEEE
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS-EVAGYMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~~-~v~~~~~~~d~~~a~~~aD~Vi  101 (209)
                      |.+.|||+|+|+ |+||+++++.|+++++++||+|+|+++  .++++.|+.|..... .....  +.|+ +++++||+||
T Consensus         2 m~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~--~~d~-~~~~~adivv   77 (146)
T d1ez4a1           2 MPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY--SGEY-SDCKDADLVV   77 (146)
T ss_dssp             BTTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEE--ECCG-GGGTTCSEEE
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEe--eccH-HHhccccEEE
Confidence            566789999998 999999999999999989999999986  567788998865321 12222  3464 6789999999


Q ss_pred             EcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 028437          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (209)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~  173 (209)
                      +++|.++++|++|.+++..|+++++++++.+.+++|+++++++|||+|    ++++++++.++||++||||+
T Consensus        78 itag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvd----v~t~~~~k~sg~p~~rViG~  145 (146)
T d1ez4a1          78 ITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD----ILTYATWKFSGFPKERVIGS  145 (146)
T ss_dssp             ECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEEC
T ss_pred             EecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccH----HHHHHHHHHHCcCccceecC
Confidence            999999999999999999999999999999999999999999999999    88888999999999999996

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.97  E-value=1.2e-30  Score=197.79  Aligned_cols=136  Identities=36%  Similarity=0.586  Sum_probs=119.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCC----CcceeEeecCCchhhhcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      |||+|+|| |.+|+++++.|+..++++||+|+|+++  .++...|+.+...    ..++..   +++ ++++++||+||+
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~---~~~-~~~~~dadvvvi   75 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG---SND-YADTANSDIVII   75 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEe---cCC-HHHhcCCeEEEE
Confidence            79999998 999999999999999999999999986  3556677777642    223322   345 588999999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~  173 (209)
                      ++|.++++|++|.+++.+|.++++++++.+.++||+++++++|||++    ++++++++.++||++|++|+
T Consensus        76 tag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd----~~~~~~~~~sg~p~~rviG~  142 (142)
T d1guza1          76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD----IMTHVAWVRSGLPKERVIGM  142 (142)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHH----HHHHHHHHHHCSCGGGEEEE
T ss_pred             EEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChH----HHHHHHHHHhCCChHhEeeC
Confidence            99999999999999999999999999999999999999999999999    77888888889999999996

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=7e-30  Score=193.99  Aligned_cols=138  Identities=34%  Similarity=0.564  Sum_probs=118.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC----chhHHHhhcCCCC--CcceeEe-ecCCchhhhcCCCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINT--RSEVAGY-MGNDQLGQALEDSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~----~~~~~~dl~~~~~--~~~v~~~-~~~~d~~~a~~~aD~Vi  101 (209)
                      |||+|+||+|.||+++++.|+.+++++|++|+|+++    .++.+.|+.|...  ....+.. ..+++ +++++|||+||
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d-~~~l~~aDvVV   79 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDEN-LRIIDESDVVI   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTC-GGGGTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcch-HHHhccceEEE
Confidence            799999988999999999999999999999999975    2466788888532  2222322 12334 58999999999


Q ss_pred             EcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 028437          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (209)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig  172 (209)
                      ++||.++++|++|.|++..|.++++++++.+.+++|++. +++|||+|    +|++++++.++||++|++|
T Consensus        80 itAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~i-ivVtNPvD----~mt~~~~k~sg~p~~rViG  145 (145)
T d1hyea1          80 ITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKI-FVITNPVD----VMTYKALVDSKFERNQVFG  145 (145)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEE-EECSSSHH----HHHHHHHHHHCCCTTSEEE
T ss_pred             EecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeE-EEEcCchH----HHHHHHHHHHCcCcccccC
Confidence            999999999999999999999999999999999999875 56899999    7888999999999999998

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.97  E-value=6.5e-30  Score=193.43  Aligned_cols=136  Identities=34%  Similarity=0.472  Sum_probs=119.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC----chhHHHhhcCCCC-CcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~----~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ||+|+||+|.||+++++.|+.+++++|++|+|++.    .+++++|+.|... .......  +.+ +++++|||+||++|
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~--~~~-~~~~~~aDiVvita   78 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR--QGG-YEDTAGSDVVVITA   78 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEE--ECC-GGGGTTCSEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEe--eCC-HHHhhhcCEEEEec
Confidence            89999977999999999999999999999999753    3567889988432 2222222  235 47789999999999


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig  172 (209)
                      |.++++|++|.+++..|.++++++++++.+++|+++++++|||+|    +|++++++.++||++|+||
T Consensus        79 G~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvD----vmt~~~~k~sg~~~~rViG  142 (142)
T d1o6za1          79 GIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIG  142 (142)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHH----HHHHHHHHHSSSCGGGEEE
T ss_pred             ccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHH----HHHHHHHHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999    8888999999999999998

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.96  E-value=1.4e-30  Score=198.07  Aligned_cols=137  Identities=20%  Similarity=0.317  Sum_probs=114.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCC--cceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +||+|+|+ |+||+++++.|+.+++.+|++|+|+++  .+++++|+.|....  ......  +.| +++++|||+||++|
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~--~~d-~~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV--IND-WAALADADVVISTL   77 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE--ESC-GGGGTTCSEEEECC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCcccee--ccC-HHHhccccEEEEec
Confidence            49999998 999999999999999989999999975  46778899886432  222222  345 57899999999999


Q ss_pred             CCCC----CCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 028437          105 GVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (209)
Q Consensus       105 g~~~----~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~  173 (209)
                      |.++    ++|++|.+++..|.++++++++.+++++|+++++++|||+|    ++++++++.+|||++||||+
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD----~~t~~~~k~sg~p~~rViGt  146 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVD----VITALFQHVTGFPAHKVIGT  146 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEEC
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHH----HHHHHHHHHhCCCccceeCc
Confidence            9876    67789999999999999999999999999999999999999    88999999999999999995

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.5e-30  Score=197.73  Aligned_cols=148  Identities=26%  Similarity=0.366  Sum_probs=125.3

Q ss_pred             ccccCCCCCC-CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCCCcceeEeecCCchhhhcC
Q 028437           19 RGYSSESVPD-RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALE   95 (209)
Q Consensus        19 ~~~~~~~~~~-~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~   95 (209)
                      +.++++.+.. .||+|+|+ |.||+++++.|+..++++|++|+|+++  .+++++||.|..............| +++++
T Consensus         9 ~~~~~~~~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d-~~~~~   86 (159)
T d2ldxa1           9 QNLVPEDKLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD-YNVSA   86 (159)
T ss_dssp             EECSSCCCCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS-GGGGT
T ss_pred             hhhcccccCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc-hhhhc
Confidence            3444443322 59999998 999999999999999999999999975  4678899998764322111111345 57889


Q ss_pred             CCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 028437           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig  172 (209)
                      +||+||+++|.+++++++|.+++..|+++++++++.+.+++|+++++++|||+|    ++++++++.+|||++||||
T Consensus        87 ~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvD----v~t~~~~k~sg~p~~rV~G  159 (159)
T d2ldxa1          87 NSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD----ILTYVVWKISGFPVGRVIG  159 (159)
T ss_dssp             TEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHH----HHHHHHHHHHCSCTTTEEE
T ss_pred             cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHH----HHHHHHHHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999999999999    7888899999999999998

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.96  E-value=6.6e-30  Score=196.11  Aligned_cols=142  Identities=30%  Similarity=0.578  Sum_probs=123.2

Q ss_pred             CCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCC----CcceeEeecCCchhhhcCC
Q 028437           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALED   96 (209)
Q Consensus        23 ~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~   96 (209)
                      ++|++++||+|+|| |.||+++++.|++.++ .|++|+|.++  .++.+.|+.|...    ...+.   .++++++++++
T Consensus         2 ~~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~-~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~   76 (154)
T d1pzga1           2 ALVQRRKKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR---AEYSYEAALTG   76 (154)
T ss_dssp             CCCSCCCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEE---EECSHHHHHTT
T ss_pred             ccccCCCcEEEECC-CHHHHHHHHHHHhCCC-ceEEEEEeccccchhHHHHHhhhccccCCeeEEe---ccCchhhhhcC
Confidence            45777889999999 9999999999998886 4899999876  4677889888642    11222   23567889999


Q ss_pred             CCEEEEcCCCCCCCCC-----ChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE
Q 028437           97 SDVVIIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF  171 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g~-----~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vi  171 (209)
                      ||+|++++|.++++|+     +|.+++..|.++++++++.+.+++|+++++++|||+|    ++++++++.++||++|+|
T Consensus        77 adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd----~lt~~~~~~sg~p~~rVi  152 (154)
T d1pzga1          77 ADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLD----CMVKVMCEASGVPTNMIC  152 (154)
T ss_dssp             CSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEE
T ss_pred             CCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHH----HHHHHHHHHhCcChhcEe
Confidence            9999999999998885     8999999999999999999999999999999999999    888889999999999999


Q ss_pred             EE
Q 028437          172 GV  173 (209)
Q Consensus       172 g~  173 (209)
                      |+
T Consensus       153 G~  154 (154)
T d1pzga1         153 GM  154 (154)
T ss_dssp             EC
T ss_pred             cC
Confidence            95

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.96  E-value=3.1e-29  Score=191.42  Aligned_cols=138  Identities=31%  Similarity=0.553  Sum_probs=118.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCC--CcceeEeecCCchhhhcCCCCEEEEc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      .+||+|+|+ |.||++++..|+++++ .|++|+|+++  .++.+.|+.|...  ........ + +.+++++++|+||++
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~-~-~~~~~~~~advvvit   78 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG-S-NTYDDLAGADVVIVT   78 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE-E-CCGGGGTTCSEEEEC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCcEEEe-c-ccccccCCCcEEEEe
Confidence            469999998 9999999998888886 6999999976  5678899999743  11222111 2 336889999999999


Q ss_pred             CCCCCCCCCC-----hhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 028437          104 AGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (209)
Q Consensus       104 ag~~~~~g~~-----r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~  173 (209)
                      +|.++++|++     |.+++..|.++++++++.++++||+++++++|||+|    +|++++++.++||++|+||+
T Consensus        79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD----~~t~~~~~~sg~p~~rViG~  149 (150)
T d1t2da1          79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGL  149 (150)
T ss_dssp             CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHH----HHHHHHHHHHCCCGGGEEEC
T ss_pred             cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchH----HHHHHHHHHHCCCchheecc
Confidence            9999988864     999999999999999999999999999999999999    88889999999999999997

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.96  E-value=3.9e-28  Score=189.67  Aligned_cols=147  Identities=25%  Similarity=0.278  Sum_probs=122.4

Q ss_pred             cCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCcc-----EEEEEecCC----chhHHHhhcCCCCCcceeEeecCCchhh
Q 028437           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQ   92 (209)
Q Consensus        22 ~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~-----ev~l~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~   92 (209)
                      .++++++.||+|+||+|.||+++++.|++.++++     +++++|+++    .++..+|+.+...+. +.....+++.++
T Consensus        18 ~~~~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~-~~~~~~~~~~~~   96 (175)
T d7mdha1          18 TKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPL-LREVSIGIDPYE   96 (175)
T ss_dssp             ---CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEEESCHHH
T ss_pred             hhccCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccccc-ccCccccccchh
Confidence            4556777899999999999999999999876543     888999865    255677888886543 222222456689


Q ss_pred             hcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCCcHHHHHHHHHH-hCCCCCCcE
Q 028437           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKK-AGTYNEKKL  170 (209)
Q Consensus        93 a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p-~~~viv~snP~~~~~~i~~~~~~~-~~~~p~~~v  170 (209)
                      +++++|+||+++|.+++||++|.|++..|.++++++++++.+++| +++++++|||+|    .+++++++ ++++|++|+
T Consensus        97 ~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd----~~t~ia~k~a~~ip~~~i  172 (175)
T d7mdha1          97 VFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN----TNALICLKNAPDIPAKNF  172 (175)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGGE
T ss_pred             hccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH----HHHHHHHHHCCCCCHHHE
Confidence            999999999999999999999999999999999999999999986 899999999999    67777766 689999999


Q ss_pred             EEE
Q 028437          171 FGV  173 (209)
Q Consensus       171 ig~  173 (209)
                      +|+
T Consensus       173 ~~m  175 (175)
T d7mdha1         173 HAL  175 (175)
T ss_dssp             EEC
T ss_pred             eCC
Confidence            985

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=5.2e-28  Score=185.39  Aligned_cols=143  Identities=29%  Similarity=0.422  Sum_probs=116.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccE-----EEEEecCC----chhHHHhhcCCCCCcceeEeecCCchhhhcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSR-----LALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALE   95 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~e-----v~l~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~   95 (209)
                      |++||||+|+||+|+||+++++.|++.+++++     +.++|.+.    ..+...++.+.... .......+++.+++++
T Consensus         1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   79 (154)
T d1y7ta1           1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFP-LLAGLEATDDPKVAFK   79 (154)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCT-TEEEEEEESCHHHHTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccc-cccccccCCchhhhcc
Confidence            67899999999999999999999999887653     45555543    23456677776543 2323222345679999


Q ss_pred             CCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCCCcHHHHHHHHHH-hCCCCCCcEEE
Q 028437           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKK-AGTYNEKKLFG  172 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p-~~~viv~snP~~~~~~i~~~~~~~-~~~~p~~~vig  172 (209)
                      ++|+||+++|.+++||++|.+++..|+++++++++.+.+++| +++++++|||+|    ++++++++ +++||++|||+
T Consensus        80 ~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD----v~t~~a~k~asg~p~~rvia  154 (154)
T d1y7ta1          80 DADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN----TNALIAYKNAPGLNPRNFTA  154 (154)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGGEEE
T ss_pred             cccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH----HHHHHHHHHcCCCcHHhccC
Confidence            999999999999999999999999999999999999999985 799999999999    66666555 68999999985

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.95  E-value=2e-28  Score=185.43  Aligned_cols=134  Identities=30%  Similarity=0.560  Sum_probs=109.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhHHHhhcCCCC----CcceeEeecCCchhhhcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      +||+|+|+ |.||+++++.|+.+++. +++++|.++  ..+.+.|+.|...    ...+..   +.| +++++++|+||+
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~---~~d-~~~~~~advvvi   75 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNN-YADTANSDVIVV   75 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESC-GGGGTTCSEEEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHHhhccccccCCCCEEEe---cCc-HHHhcCCCEEEE
Confidence            49999998 99999999999998874 899999976  4667889988753    122332   346 477999999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig  172 (209)
                      +||.++++|++|.+++..|.++++++++.+.+++|+++++++|||+|    ++++++++.+|||++|+||
T Consensus        76 tag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvD----v~t~~~~~~sglp~~rViG  141 (142)
T d1uxja1          76 TSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD----AMTYLAAEVSGFPKERVIG  141 (142)
T ss_dssp             CCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEEE
T ss_pred             eeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchH----HHHHHHHHHHCcCcccccC
Confidence            99999999999999999999999999999999999999999999999    7788889999999999998

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.95  E-value=2.3e-27  Score=181.75  Aligned_cols=142  Identities=27%  Similarity=0.358  Sum_probs=115.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCc-----cEEEEEecCCch----hHHHhhcCCCCCcceeEeecCCchhhhcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIANTP----GVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~-----~ev~l~D~~~~~----~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   97 (209)
                      +||||+|+||+|.||+++++.|++.+++     .+++++|.++.+    +..+++.+...+. ........+.+++++++
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   80 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKDL   80 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTTC
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccccc-ccccccCcccccccCCc
Confidence            5789999999899999999999877653     379999987532    2344455554332 22222234568999999


Q ss_pred             CEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCC-eEEEEecCCCCCcHHHHHHHHHHhC-CCCCCcEEEE
Q 028437           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN-AIVNMISNPVNSTVPIAAEVFKKAG-TYNEKKLFGV  173 (209)
Q Consensus        98 D~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~-~~viv~snP~~~~~~i~~~~~~~~~-~~p~~~vig~  173 (209)
                      |+||+++|.++++|++|.+++..|.++++++++.+.+++|+ +++|++|||+|    ++++++++.+ ++|++|++|+
T Consensus        81 dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD----~mt~v~~k~s~g~P~~~v~~m  154 (154)
T d5mdha1          81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPAN----TNCLTASKSAPSIPKENFSCL  154 (154)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGGEEEC
T ss_pred             eEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHH----HHHHHHHHHcCCCCHHHEeCC
Confidence            99999999999999999999999999999999999999975 57889999999    7888888866 9999999885

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.90  E-value=3.5e-24  Score=166.28  Aligned_cols=137  Identities=20%  Similarity=0.235  Sum_probs=105.0

Q ss_pred             CCeEEEEcCCCchHHH--HHHHHHhCCC--ccEEEEEecCC--chhHHHhhcCCC------CCcceeEeecCCchhhhcC
Q 028437           28 DRKVAVLGAAGGIGQP--LALLMKLNPL--VSRLALYDIAN--TPGVAADVGHIN------TRSEVAGYMGNDQLGQALE   95 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~--la~~L~~~g~--~~ev~l~D~~~--~~~~~~dl~~~~------~~~~v~~~~~~~d~~~a~~   95 (209)
                      +|||+|+|| |.+|..  ++..+.....  .+||+|+|+++  .++...|+.+..      .+..+..   ++|.+++++
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~---~td~~~al~   76 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL---TLDRRRALD   76 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHT
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeee---cCCchhhcC
Confidence            369999999 988754  4444444332  46999999976  345555654431      2223333   457789999


Q ss_pred             CCCEEEEcCCCCCCCCCChhH--------------------HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHH
Q 028437           96 DSDVVIIPAGVPRKPGMTRDD--------------------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA  155 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g~~r~~--------------------~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~  155 (209)
                      |||+||+++|.+++++++|.+                    +..+|+++++++++.++++||++|++++|||++    ++
T Consensus        77 gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvd----v~  152 (169)
T d1s6ya1          77 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAG----MV  152 (169)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HH
T ss_pred             CCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHH----HH
Confidence            999999999988766554443                    357899999999999999999999999999999    88


Q ss_pred             HHHHHHhCCCCCCcEEEEe
Q 028437          156 AEVFKKAGTYNEKKLFGVT  174 (209)
Q Consensus       156 ~~~~~~~~~~p~~~vig~~  174 (209)
                      ++++++.  +|++|++|+|
T Consensus       153 t~~~~k~--~p~~kviGlC  169 (169)
T d1s6ya1         153 TEAVLRY--TKQEKVVGLC  169 (169)
T ss_dssp             HHHHHHH--CCCCCEEECC
T ss_pred             HHHHHHH--CCCCCEEeeC
Confidence            8899887  5899999997

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=2.2e-23  Score=161.28  Aligned_cols=136  Identities=21%  Similarity=0.270  Sum_probs=103.7

Q ss_pred             CCCeEEEEcCCCchHHHHHH-HHH-hCC--CccEEEEEecCCc--hhHHHhhcCCC----CCcceeEeecCCchhhhcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLAL-LMK-LNP--LVSRLALYDIANT--PGVAADVGHIN----TRSEVAGYMGNDQLGQALED   96 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~-~L~-~~g--~~~ev~l~D~~~~--~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~   96 (209)
                      +..||+|+|| |++|.+.+. .++ ...  ..+||+|+|+++.  ++...++.+..    .+..+..   ++|.+++++|
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~eal~~   77 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAA---TTDPEEAFTD   77 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEE---ESCHHHHHSS
T ss_pred             CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEe---cCChhhccCC
Confidence            4579999999 999887442 333 222  2469999999863  33344444332    1223332   4578899999


Q ss_pred             CCEEEEcCCCCCCCCCChhHHH--------------------HHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHH
Q 028437           97 SDVVIIPAGVPRKPGMTRDDLF--------------------NINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g~~r~~~~--------------------~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~  156 (209)
                      ||+||+++|.++++|++|.+.+                    .+|+++++++++.++++||++|++++|||++    +++
T Consensus        78 AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvd----v~t  153 (167)
T d1u8xx1          78 VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAA----IVA  153 (167)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHH----HHH
T ss_pred             CCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHH----HHH
Confidence            9999999999888887776654                    4679999999999999999999999999999    888


Q ss_pred             HHHHHhCCCCCCcEEE
Q 028437          157 EVFKKAGTYNEKKLFG  172 (209)
Q Consensus       157 ~~~~~~~~~p~~~vig  172 (209)
                      +++++.  +|++|+|.
T Consensus       154 ~~~~k~--~P~~rVI~  167 (167)
T d1u8xx1         154 EATRRL--RPNSKILN  167 (167)
T ss_dssp             HHHHHH--STTCCEEE
T ss_pred             HHHHHH--CCcccccC
Confidence            888887  69999973

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=2.6e-24  Score=165.91  Aligned_cols=137  Identities=19%  Similarity=0.238  Sum_probs=99.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh---C-CCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKL---N-PLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~---~-g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      |||+|+|| |++|.+.+...+.   . ...+||+|+|+++.+ ....|+.+........... +++.+++++|||+||++
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~-t~~~~~~l~~aDvVVit   78 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI-SDTFEGAVVDAKYVIFQ   78 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE-CSSHHHHHTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE-ecCcccccCCCCEEEEe
Confidence            79999999 9999888754332   1 225699999998632 2334444432221222222 45668999999999999


Q ss_pred             CCCCCCCCCChhHH--------------------HHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhC
Q 028437          104 AGVPRKPGMTRDDL--------------------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (209)
Q Consensus       104 ag~~~~~g~~r~~~--------------------~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~  163 (209)
                      +|.+++++++|.+.                    ..++++.+.++.+ +.+++|++|++++|||++    ++++++++. 
T Consensus        79 a~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~p~a~~i~vtNPvd----iit~~~~~~-  152 (162)
T d1up7a1          79 FRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKTSNATIVNFTNPSG----HITEFVRNY-  152 (162)
T ss_dssp             CCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSHH----HHHHHHHHT-
T ss_pred             cccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccCCCeEEEEeCCHHH----HHHHHHHHh-
Confidence            99987666555443                    3456677777766 667899999999999999    889999997 


Q ss_pred             CCCCCcEEEEe
Q 028437          164 TYNEKKLFGVT  174 (209)
Q Consensus       164 ~~p~~~vig~~  174 (209)
                       +|++|++|+|
T Consensus       153 -~p~~rviGlC  162 (162)
T d1up7a1         153 -LEYEKFIGLC  162 (162)
T ss_dssp             -TCCSSEEECC
T ss_pred             -CCCCCEEeeC
Confidence             5889999997

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=1.2e-21  Score=152.14  Aligned_cols=135  Identities=21%  Similarity=0.190  Sum_probs=99.3

Q ss_pred             CCCeEEEEcCCCchHHHHH--HHHHhC-CC-ccEEEEEecCCc--hhHHHhhcCCC----CCcceeEeecCCchhhhcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLA--LLMKLN-PL-VSRLALYDIANT--PGVAADVGHIN----TRSEVAGYMGNDQLGQALED   96 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la--~~L~~~-g~-~~ev~l~D~~~~--~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~   96 (209)
                      |.|||+|+|| |++|++++  ..++.. ++ ..||+|+|+++.  ++...++.+..    ...++..   ++|++++++|
T Consensus         1 p~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~---~td~~eaL~d   76 (171)
T d1obba1           1 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEK---TMNLDDVIID   76 (171)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHTT
T ss_pred             CCcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEE---eCChhhcccC
Confidence            4579999999 99998753  334433 22 359999999863  33444444431    1223333   4688999999


Q ss_pred             CCEEEEcCCCC------------------CCCCCChhH--------HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 028437           97 SDVVIIPAGVP------------------RKPGMTRDD--------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (209)
Q Consensus        97 aD~Vi~~ag~~------------------~~~g~~r~~--------~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~  150 (209)
                      ||+|+++++++                  +.+++++.+        ...+|+++++++++.++++||++|++++|||++ 
T Consensus        77 ad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvd-  155 (171)
T d1obba1          77 ADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIF-  155 (171)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHH-
T ss_pred             CCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHH-
Confidence            99999997654                  233344433        246899999999999999999999999999999 


Q ss_pred             cHHHHHHHHHHhCCCCCCcEEE
Q 028437          151 TVPIAAEVFKKAGTYNEKKLFG  172 (209)
Q Consensus       151 ~~~i~~~~~~~~~~~p~~~vig  172 (209)
                         ++++++++.++   -|+||
T Consensus       156 ---v~t~~~~k~~~---~k~iG  171 (171)
T d1obba1         156 ---EGTTLVTRTVP---IKAVG  171 (171)
T ss_dssp             ---HHHHHHHHHSC---SEEEE
T ss_pred             ---HHHHHHHHhcC---CCccC
Confidence               88899999864   48887

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=1.8e-11  Score=102.20  Aligned_cols=113  Identities=20%  Similarity=0.161  Sum_probs=75.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--chhH---HHhhcCCCCCcceeE-eecCCchhhhcC--CCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGV---AADVGHINTRSEVAG-YMGNDQLGQALE--DSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--~~~~---~~dl~~~~~~~~v~~-~~~~~d~~~a~~--~aD~V  100 (209)
                      |||+||||+||+|++|+..|+++|+  +|+++|+..  ....   ...+...... .+.. +...+.+.++++  ++|+|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~Dl~d~~~l~~~~~~~~~d~V   77 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLGGKHPT-FVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHHTSCCE-EEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHhhcCCCCE-EEEeecCCHHHHHHHHhccCCCEE
Confidence            7999999999999999999999999  999999732  1111   1112221110 0110 111124556676  78999


Q ss_pred             EEcCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       101 i~~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ||+|+....+.  .+..+.+..|+..++++++.++++... ++|+.|
T Consensus        78 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~-~~i~~S  123 (338)
T d1udca_          78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSS  123 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             EECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCC-EEEecC
Confidence            99998643111  245678899999999999999998654 344444

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.2e-11  Score=93.33  Aligned_cols=120  Identities=16%  Similarity=0.241  Sum_probs=84.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hh--HH----HhhcCCCC--------------CcceeEee
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG--VA----ADVGHINT--------------RSEVAGYM   85 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~--~~----~dl~~~~~--------------~~~v~~~~   85 (209)
                      .||+|+|| |.+|+.++..++..|+  +|+++|+++.   .+  ..    ..+.....              -.++..  
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~--   79 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT--   79 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE--
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc--
Confidence            49999999 9999999999999999  9999999852   11  00    01110000              012332  


Q ss_pred             cCCchhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCC
Q 028437           86 GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (209)
Q Consensus        86 ~~~d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~  165 (209)
                       ++|+++++++||+|+.++              .+|++..+++...++++++.. .|++||.+...   ++++....  -
T Consensus        80 -~~d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~-~ilasnTS~l~---i~~la~~~--~  138 (192)
T d1f0ya2          80 -STDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEH-TIFASNTSSLQ---ITSIANAT--T  138 (192)
T ss_dssp             -ESCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTT-CEEEECCSSSC---HHHHHTTS--S
T ss_pred             -cchhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccC-ceeeccCcccc---cchhhhhc--c
Confidence             457889999999999995              356789999999999998643 34689988753   34444333  3


Q ss_pred             CCCcEEEEe
Q 028437          166 NEKKLFGVT  174 (209)
Q Consensus       166 p~~~vig~~  174 (209)
                      .|+|++|++
T Consensus       139 ~p~r~ig~H  147 (192)
T d1f0ya2         139 RQDRFAGLH  147 (192)
T ss_dssp             CGGGEEEEE
T ss_pred             CHhHEEeec
Confidence            577888874

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.18  E-value=2.4e-11  Score=100.20  Aligned_cols=111  Identities=19%  Similarity=0.202  Sum_probs=76.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH---HHhhcCCCCCcceeEee----cCCchhhhcCCC--CEE
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---AADVGHINTRSEVAGYM----GNDQLGQALEDS--DVV  100 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~---~~dl~~~~~~~~v~~~~----~~~d~~~a~~~a--D~V  100 (209)
                      ||+||||+||+|++++..|+++|+  +|+.+|+-.....   ...+....   .++.+.    ..++++++++++  |+|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~~~~~~~~~~~~---~~~~i~~Di~~~~~l~~~~~~~~~d~V   76 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSLG---NFEFVHGDIRNKNDVTRLITKYMPDSC   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTTC---CCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhHHHHhhccC---CcEEEEcccCCHHHHHHHHHhcCCceE
Confidence            899999999999999999999999  9999986321111   11222211   122111    122456677655  999


Q ss_pred             EEcCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       101 i~~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ||+|+......  .+..++...|+..+.++++++.+......++..|
T Consensus        77 ih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS  123 (338)
T d1orra_          77 FHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  123 (338)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EeecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            99987653221  2456778899999999999999987666666555

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.4e-10  Score=95.96  Aligned_cols=111  Identities=14%  Similarity=0.113  Sum_probs=76.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      +||+||||+||+|++++..|+++|+  +|+.+|+... .....+........+.... .+.++.++.++|+|||+|+...
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~d~VihlAa~~~   77 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFT-GRKRNVEHWIGHENFELIN-HDVVEPLYIEVDQIYHLASPAS   77 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSS-CCGGGTGGGTTCTTEEEEE-CCTTSCCCCCCSEEEECCSCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCCc-CCHHHHHHhcCCCceEEEe-hHHHHHHHcCCCEEEECcccCC
Confidence            5999999999999999999999999  9999997421 0111111111111222221 2235667789999999998643


Q ss_pred             CC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          109 KP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       109 ~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      .+  ..+..+.+..|+..+.++++++++...  ++|++|
T Consensus        78 ~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~S  114 (312)
T d2b69a1          78 PPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLAS  114 (312)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             chhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEE
Confidence            11  134567789999999999999998753  566664

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=7.1e-11  Score=92.07  Aligned_cols=109  Identities=14%  Similarity=0.157  Sum_probs=72.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      .|+||+|+||||++|++++..|+++|+  +|++++|++.+.  .+..........-++...++++++++++|+||+++|.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~~~~--~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~   77 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRL--PSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGS--CSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcChhhc--ccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence            456999999999999999999999999  999999975321  1111111100000011123577889999999999886


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      .......     ..+.+.++++++.+++.+-. ++|.+|
T Consensus        78 ~~~~~~~-----~~~~~~~~~l~~aa~~~~v~-r~i~~s  110 (205)
T d1hdoa_          78 RNDLSPT-----TVMSEGARNIVAAMKAHGVD-KVVACT  110 (205)
T ss_dssp             TTCCSCC-----CHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             CCchhhh-----hhhHHHHHHHHHHHHhcCCC-eEEEEe
Confidence            5322111     23456788899999887633 566665

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.11  E-value=1.7e-10  Score=96.73  Aligned_cols=117  Identities=15%  Similarity=0.009  Sum_probs=78.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |.+.|||+||||+||+|++|+..|+++|+  +|+.+|+.........+.....  ...+....+++.++++++|.|+++|
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~--~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMTEDMFCDEF--HLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSCGGGTCSEE--EECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhcccCcE--EEeechhHHHHHHHhhcCCeEeecc
Confidence            44668999999999999999999999999  9999998542111111111110  0001111124556788999999998


Q ss_pred             CCCCCC---CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          105 GVPRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       105 g~~~~~---g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +.....   ..........|+..+.++++.+.+.+.. ++|..|.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk-~~i~~SS  131 (363)
T d2c5aa1          88 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASS  131 (363)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEE
T ss_pred             cccccccccccccccccccccchhhHHHHhHHhhCcc-ccccccc
Confidence            765321   2344566788999999999999886543 5666653

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.1e-10  Score=91.13  Aligned_cols=113  Identities=19%  Similarity=0.207  Sum_probs=76.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      +||+|+||||++|++++..|+++|.+.+|++++|++............  ....++...+++.++++++|.|++++|...
T Consensus        15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~--~~~~D~~~~~~~~~~~~~~d~vi~~~~~~~   92 (232)
T d2bkaa1          15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVN--QEVVDFEKLDDYASAFQGHDVGFCCLGTTR   92 (232)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCE--EEECCGGGGGGGGGGGSSCSEEEECCCCCH
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceee--eeeecccccccccccccccccccccccccc
Confidence            489999999999999999999999666999999965211100011100  001111122467788999999999987542


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       109 ~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                       ...+..++...|.....++++.+.+.... +++.+|
T Consensus        93 -~~~~~~~~~~~~~~~~~~~~~~a~~~~v~-~fi~~S  127 (232)
T d2bkaa1          93 -GKAGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLS  127 (232)
T ss_dssp             -HHHHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             -cccchhhhhhhcccccceeeecccccCcc-ccccCC
Confidence             11234567788999999999998876533 466665

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.04  E-value=1.5e-10  Score=89.61  Aligned_cols=121  Identities=15%  Similarity=0.154  Sum_probs=82.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hh--H----HHhhcCCC-CC--------cceeEeecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG--V----AADVGHIN-TR--------SEVAGYMGND   88 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~--~----~~dl~~~~-~~--------~~v~~~~~~~   88 (209)
                      +..||+|+|| |.+|+.++..++..|+  +|+++|+++.   .+  .    ..++.... ..        .++..   +.
T Consensus         3 ~I~~vaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~   76 (186)
T d1wdka3           3 DVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TL   76 (186)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ES
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec---cc
Confidence            3468999999 9999999999999999  9999999852   10  0    11111111 10        12332   33


Q ss_pred             chhhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 028437           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (209)
Q Consensus        89 d~~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~  168 (209)
                      + .+++.+||+|+.++              .+|++..+++.+.+.++++.. .|++||.+...   ++++.....  .|+
T Consensus        77 ~-~~~~~~adlViEav--------------~E~l~~K~~lf~~l~~~~~~~-~IiaSnTS~l~---i~~la~~~~--~p~  135 (186)
T d1wdka3          77 S-YGDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVRED-AILASNTSTIS---ISLLAKALK--RPE  135 (186)
T ss_dssp             S-STTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTT-CEEEECCSSSC---HHHHGGGCS--CGG
T ss_pred             c-cccccccceeeeee--------------cchHHHHHHHHHHHHhhcCCC-eeEEecccccc---HHHHHHhcc--Cch
Confidence            4 46789999999985              346788999999999998643 24689988753   344444433  467


Q ss_pred             cEEEEe
Q 028437          169 KLFGVT  174 (209)
Q Consensus       169 ~vig~~  174 (209)
                      |++|++
T Consensus       136 r~~g~H  141 (186)
T d1wdka3         136 NFVGMH  141 (186)
T ss_dssp             GEEEEE
T ss_pred             heEeec
Confidence            787774

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=4.7e-10  Score=94.34  Aligned_cols=114  Identities=12%  Similarity=-0.008  Sum_probs=73.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh---HHHhhcCCC--CCcceeEee----cCCchhhhcCCC--C
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHIN--TRSEVAGYM----GNDQLGQALEDS--D   98 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~---~~~dl~~~~--~~~~v~~~~----~~~d~~~a~~~a--D   98 (209)
                      +++|||||||+|++|+..|++.|+  +|+.+|+.....   ....+.+..  ....+..+.    ...++++.++++  |
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            556999999999999999999999  999999853211   111111111  111222211    122455667655  9


Q ss_pred             EEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhC--CCeEEEEec
Q 028437           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYC--PNAIVNMIS  145 (209)
Q Consensus        99 ~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~--p~~~viv~s  145 (209)
                      +|+++|+.....  ..+...++..|+..+.++++++++++  +..++|.+|
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~S  131 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS  131 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence            999999875422  24566778899999999999999876  335677665

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.02  E-value=1.3e-09  Score=90.87  Aligned_cols=115  Identities=11%  Similarity=-0.016  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCCCcce-----eEeecCCchhhhcCCCCEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEV-----AGYMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~~~v-----~~~~~~~d~~~a~~~aD~Vi  101 (209)
                      -.+|+||||+||+|++++..|+++|+  +|+...++.... ....+.+.......     .++....++.++++++|.|+
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            36999999999999999999999999  998887764211 11111111000011     01112235668899999999


Q ss_pred             EcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ++++... ...+...+...|+..+.++++.+.++....+++++|
T Consensus        89 ~~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~S  131 (342)
T d1y1pa1          89 HIASVVS-FSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS  131 (342)
T ss_dssp             ECCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred             hhccccc-ccccccccccchhhhHHHHHHhhhcccccccccccc
Confidence            9987653 334566677889999999999999865444566655

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.00  E-value=2e-10  Score=97.39  Aligned_cols=112  Identities=14%  Similarity=0.125  Sum_probs=75.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch---------------hH------HHhhcCCCCCcceeEee--
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---------------GV------AADVGHINTRSEVAGYM--   85 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~---------------~~------~~dl~~~~~~~~v~~~~--   85 (209)
                      |||+||||+||+|++|+..|++.|+  +|+.+|.....               ..      ...+...    .++.+.  
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~D   75 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGK----SIELYVGD   75 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCC----CCEEEESC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhhcCC----CcEEEEcc
Confidence            6999999999999999999999999  99999852100               00      0011111    112111  


Q ss_pred             --cCCchhhhcCC--CCEEEEcCCCCCCCC--CC---hhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437           86 --GNDQLGQALED--SDVVIIPAGVPRKPG--MT---RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        86 --~~~d~~~a~~~--aD~Vi~~ag~~~~~g--~~---r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                        ..+.+++++++  .|+|+|+|+....+.  .+   ..++...|+..+.++++.+++++....++..|.
T Consensus        76 l~d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss  145 (393)
T d1i24a_          76 ICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGT  145 (393)
T ss_dssp             TTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCCHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccc
Confidence              11234556664  599999997653211  12   235678899999999999999988877766663

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=5.1e-10  Score=92.91  Aligned_cols=103  Identities=15%  Similarity=0.101  Sum_probs=70.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee----cCCc-hhhhcCCCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQ-LGQALEDSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d-~~~a~~~aD~Vi~~  103 (209)
                      |||+||||+||+|++++..|+++|+. +|+.+|+....  ..++....   .++.+.    ...+ .+.+.+++|+|||+
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~-~V~~ld~~~~~--~~~~~~~~---~~~~i~~Di~~~~~~~~~~~~~~d~Vih~   74 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDA--ISRFLNHP---HFHFVEGDISIHSEWIEYHVKKCDVVLPL   74 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGG--GGGGTTCT---TEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCcc--hhhhccCC---CeEEEECccCChHHHHHHHHhCCCccccc
Confidence            69999999999999999999998853 89999985321  11122211   222221    1112 23467899999999


Q ss_pred             CCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCC
Q 028437          104 AGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCP  137 (209)
Q Consensus       104 ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p  137 (209)
                      |+....+.  .+..+.+..|+..+.++++.+.+...
T Consensus        75 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~  110 (342)
T d2blla1          75 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK  110 (342)
T ss_dssp             BCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC
T ss_pred             cccccccccccCCccccccccccccccccccccccc
Confidence            98653222  23446788999999999999988654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.95  E-value=5.9e-09  Score=81.19  Aligned_cols=111  Identities=17%  Similarity=0.215  Sum_probs=69.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC----------------CcceeEeecCCchhh
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLGQ   92 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~----------------~~~v~~~~~~~d~~~   92 (209)
                      |||+|+|+ |++|..++..|+..|+  +|+.+|.++.  ....+.....                ...+..   ++++++
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~--~V~g~D~n~~--~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~---~~~~~~   72 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSST--KIDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKK   72 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCC--cEEEEeCCHH--HHHHhcccCCcccchhhhhhhhhhhccccccc---CCCHHH
Confidence            79999999 9999999999999999  9999999742  2222221110                112222   457889


Q ss_pred             hcCCCCEEEEcCCCCCCCCC-ChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEe-cCCCCC
Q 028437           93 ALEDSDVVIIPAGVPRKPGM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNS  150 (209)
Q Consensus        93 a~~~aD~Vi~~ag~~~~~g~-~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~-snP~~~  150 (209)
                      ++++||+++++.+.|..... .....+.   .....+.+.++...++..+++- |-|.+.
T Consensus        73 ~i~~~d~i~i~VpTP~~~~~~~d~~~~~---~~~~~i~~~~~~~~~~~liii~STv~pGt  129 (202)
T d1mv8a2          73 AVLDSDVSFICVGTPSKKNGDLDLGYIE---TVCREIGFAIREKSERHTVVVRSTVLPGT  129 (202)
T ss_dssp             HHHTCSEEEECCCCCBCTTSSBCCHHHH---HHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred             HHhhCCEEEEecCccccccccccchhhh---hhhhhhhheeecccCCcceeeccccCCcc
Confidence            99999999999988753332 1112222   2234444444444455544443 455554

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=1.8e-09  Score=89.99  Aligned_cols=113  Identities=17%  Similarity=0.051  Sum_probs=72.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hh---HHHhhcCCCCCcceeEeecCCchhhhcC--CCCEEEE
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PG---VAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVII  102 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~---~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aD~Vi~  102 (209)
                      .|+||||+||+|++|+..|+++|+  +|+++|+...  ..   ....+..........++....+++++++  +.|+|||
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vih   80 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIH   80 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--eEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEE
Confidence            489999999999999999999999  9999987421  11   1112222211100001111123444444  7899999


Q ss_pred             cCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       103 ~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +|+.....  ......+...|+..+.++++++++..... +++.|
T Consensus        81 lAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~-~i~~S  124 (347)
T d1z45a2          81 FAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSK-FVFSS  124 (347)
T ss_dssp             CCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCE-EEEEE
T ss_pred             ccccccccccccCcccccccchhhhHHHHHHHHhcccce-EEeec
Confidence            99865311  12445677899999999999999876554 44443

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.91  E-value=4.3e-09  Score=86.72  Aligned_cols=116  Identities=16%  Similarity=0.146  Sum_probs=76.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC----ccEEEEEecCCchhHHHhhcCCCCCcceeEeec----CCchhhhcCCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPL----VSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~----~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aD~V  100 (209)
                      |||+||||+||+|++++..|+++|+    ..++..+|..........+........+..+..    .........+.|.|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            7999999999999999999999886    347788887432111111221111112222211    11345567899999


Q ss_pred             EEcCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       101 i~~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +++|+.+....  ....+.+..|+..+.++++.+.++... ++|.+|
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~-~~I~~S  126 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVS  126 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCc-eEEEee
Confidence            99987653221  234566789999999999999987653 566665

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.89  E-value=1.1e-09  Score=92.22  Aligned_cols=107  Identities=17%  Similarity=0.148  Sum_probs=68.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee-c---CCchhhhcC--CCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQLGQALE--DSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~~--~aD~Vi~  102 (209)
                      |||+||||+||+|++|+..|++.|+ ..|.++|+.........+.+......+.... +   ..+++++++  ++|+|||
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~-~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            6999999999999999999999998 1366777643212122222222111233221 1   112344444  5899999


Q ss_pred             cCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhC
Q 028437          103 PAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYC  136 (209)
Q Consensus       103 ~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~  136 (209)
                      +|+....+.  .+..+++..|+..+.++++.+.+..
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~  115 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYW  115 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            997643111  2345678999999999999998753

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.85  E-value=2.5e-09  Score=89.02  Aligned_cols=109  Identities=17%  Similarity=0.134  Sum_probs=71.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee----cCCchhhhcCCCCEEEEc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aD~Vi~~  103 (209)
                      ||||+|||||||||++|+..|+++|+--.++.+|..........+.... ...+..+.    ....+.++++++|.|++.
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~-~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~   80 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAIL-GDRVELVVGDIADAELVDKLAAKADAIVHY   80 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGC-SSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhh-cCCeEEEEccCCCHHHHHHHHhhhhhhhhh
Confidence            7899999999999999999999998722455555421111111111110 11222211    123467788999999999


Q ss_pred             CCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCC
Q 028437          104 AGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCP  137 (209)
Q Consensus       104 ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p  137 (209)
                      |+......  .+..+++..|+..+.++++.+.+...
T Consensus        81 a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~  116 (346)
T d1oc2a_          81 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI  116 (346)
T ss_dssp             CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC
T ss_pred             hhcccccchhhCcccceeeehHhHHhhhhhhccccc
Confidence            87653221  23456788999999999999988764

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.85  E-value=7.5e-09  Score=84.72  Aligned_cols=115  Identities=17%  Similarity=0.082  Sum_probs=74.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeec-CCc---hhhhcC--CCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQALE--DSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~--~aD~Vi~  102 (209)
                      ++|+||||+||+|++++..|+++|+  +|+.+|+.........+.+......+..... -.|   +.+.+.  ..+++++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~   78 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN   78 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccc
Confidence            3899999999999999999999999  9999998642111111222111112222211 112   222222  4567777


Q ss_pred             cCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          103 PAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       103 ~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +++......  .+..+++..|+..+.++++.+.++....+++..|
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~S  123 (321)
T d1rpna_          79 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAS  123 (321)
T ss_dssp             CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             ccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCccccccc
Confidence            766543221  3456778899999999999999988776666654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.81  E-value=3.5e-08  Score=74.53  Aligned_cols=101  Identities=22%  Similarity=0.308  Sum_probs=65.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-HHhhcCC-----CCCcceeEeecCCchhhhcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHI-----NTRSEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-~~dl~~~-----~~~~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      +||+|+|| |.+|..++..|.+.|+  +|.++|+++.... ..+....     ...........+++++++++++|+||+
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii   78 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI   78 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence            59999999 9999999999999999  9999999753211 1111110     000000111123577899999999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCC
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~  148 (209)
                      +....                ...+++++++++- ++..++...|..
T Consensus        79 ~v~~~----------------~~~~~~~~i~~~l~~~~~iv~~~g~~  109 (184)
T d1bg6a2          79 VVPAI----------------HHASIAANIASYISEGQLIILNPGAT  109 (184)
T ss_dssp             CSCGG----------------GHHHHHHHHGGGCCTTCEEEESSCCS
T ss_pred             EEchh----------------HHHHHHHHhhhccCCCCEEEEeCCCC
Confidence            85221                2356777788775 566655544443

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.79  E-value=2.3e-09  Score=90.47  Aligned_cols=111  Identities=18%  Similarity=0.108  Sum_probs=69.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEecCC----------chhH-HHhhcCCC------CCcceeEeec----
Q 028437           29 RKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN----------TPGV-AADVGHIN------TRSEVAGYMG----   86 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~-~g~~~ev~l~D~~~----------~~~~-~~dl~~~~------~~~~v~~~~~----   86 (209)
                      |||+||||+||+|++|+..|++ .|+  +|+++|+-.          .... ...+....      ....+..+.+    
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d   80 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence            6999999999999999998875 788  999999511          0111 11111110      0111111111    


Q ss_pred             CCchhhhc---CCCCEEEEcCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEE
Q 028437           87 NDQLGQAL---EDSDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (209)
Q Consensus        87 ~~d~~~a~---~~aD~Vi~~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~v  141 (209)
                      ...+++++   +++|+|+|+|+....+.  .........|+..+.++++.+++......+
T Consensus        81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~  140 (383)
T d1gy8a_          81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKII  140 (383)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccc
Confidence            11234444   57899999997653211  234456788999999999999987765433

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.78  E-value=7.5e-09  Score=80.06  Aligned_cols=73  Identities=15%  Similarity=0.317  Sum_probs=54.2

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhc--C--------CCCCcceeEeecCCchhhh
Q 028437           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG--H--------INTRSEVAGYMGNDQLGQA   93 (209)
Q Consensus        24 ~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~--~--------~~~~~~v~~~~~~~d~~~a   93 (209)
                      ++..|+||+|+|| |.+|.+++..|...|+  +|.+|++++..  ...+.  +        ...+..+..   ++|++++
T Consensus         3 ~~~~m~KI~ViGa-G~wGtAlA~~La~~g~--~V~l~~r~~~~--~~~i~~~~~n~~yl~~~~l~~~i~~---t~~l~~a   74 (189)
T d1n1ea2           3 ELLYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEE--VRLVNEKRENVLFLKGVQLASNITF---TSDVEKA   74 (189)
T ss_dssp             CCCCEEEEEEECC-SHHHHHHHHHHHTTEE--EEEEECSCHHH--HHHHHHHTBCTTTSTTCBCCTTEEE---ESCHHHH
T ss_pred             ccceeceEEEECC-CHHHHHHHHHHHHcCC--eEEEEEecHHH--HHHHhhccccccccccccccccccc---chhhhhc
Confidence            3455678999999 9999999999999999  99999997532  11221  1        112234443   4688999


Q ss_pred             cCCCCEEEEcC
Q 028437           94 LEDSDVVIIPA  104 (209)
Q Consensus        94 ~~~aD~Vi~~a  104 (209)
                      ++++|+||++.
T Consensus        75 ~~~ad~iiiav   85 (189)
T d1n1ea2          75 YNGAEIILFVI   85 (189)
T ss_dssp             HTTCSCEEECS
T ss_pred             cCCCCEEEEcC
Confidence            99999999985

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=98.78  E-value=4.8e-09  Score=87.03  Aligned_cols=112  Identities=16%  Similarity=0.133  Sum_probs=73.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee----cCCchhhhcC--CCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQALE--DSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~--~aD~V  100 (209)
                      +||+||||+||||++++..|++.|+  +|+.+|++...  ..........   .++...    ....+.++++  ..|+|
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~---~i~~~~~Dl~d~~~l~~~~~~~~~~~v   83 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARVAD---GMQSEIGDIRDQNKLLESIREFQPEIV   83 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTTTT---TSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCccHHHHhhhhccc---CCeEEEeeccChHhhhhhhhhchhhhh
Confidence            5999999999999999999999999  99999996421  1111111111   111111    1112344554  45899


Q ss_pred             EEcCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       101 i~~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +++|+.+....  ....++...|+..+.++++++.+......++..|
T Consensus        84 ~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s  130 (356)
T d1rkxa_          84 FHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  130 (356)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             hhhhccccccccccCCccccccccccchhhhhhhhcccccccccccc
Confidence            99987643111  2345667889999999999999887655555444

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=98.78  E-value=2e-09  Score=86.62  Aligned_cols=99  Identities=17%  Similarity=0.180  Sum_probs=66.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC--CCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aD~Vi~~ag~  106 (209)
                      |||+|+||+||+|++|+..|.+.|+   ++.+++.... ...|+.+            ...+++.++  +.|+|||+||.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~---~v~~~~~~~~-~~~Dl~~------------~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGN---LIALDVHSKE-FCGDFSN------------PKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSE---EEEECTTCSS-SCCCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC---EEEEECCCcc-ccCcCCC------------HHHHHHHHHHcCCCEEEEeccc
Confidence            7999999999999999999988884   4555554311 1112211            113445555  45999999986


Q ss_pred             CCC--CCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          107 PRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       107 ~~~--~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ...  ...........|...+..+.+.+++.+  .+++++|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~~s  103 (298)
T d1n2sa_          65 TAVDKAESEPELAQLLNATSVEAIAKAANETG--AWVVHYS  103 (298)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT--CEEEEEE
T ss_pred             ccccccccCccccccccccccccchhhhhccc--ccccccc
Confidence            531  123455677889999999999988654  3455554

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.78  E-value=1.8e-08  Score=77.14  Aligned_cols=98  Identities=20%  Similarity=0.280  Sum_probs=64.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCC----CCc--ceeEeecCCchhhhcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN----TRS--EVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~----~~~--~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      |||+|+|+ |.+|.+++..|...|+  +|.+|.++..+.....+....    +..  .-.....++|++++++++|+||+
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~--~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~   77 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLL   77 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhc
Confidence            79999999 9999999999999999  999998753222233332221    111  11112235688899999999999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +...                ..++++++++..+-++..+++++
T Consensus        78 avps----------------~~~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          78 GVST----------------DGVLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             CSCG----------------GGHHHHHHHHTTTCCSCEEEECC
T ss_pred             ccch----------------hhhHHHHHhhccccccceecccc
Confidence            8521                23356666666665554455443

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.76  E-value=6e-09  Score=80.92  Aligned_cols=110  Identities=13%  Similarity=0.092  Sum_probs=72.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      ++||+|+||||++|++++..|+++|+..+|....+++.... ..+...     ...+  .+.......++|.||+++|..
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~-~~~~~~-----~~d~--~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH-PRLDNP-----VGPL--AELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC-TTEECC-----BSCH--HHHGGGCCSCCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc-cccccc-----ccch--hhhhhccccchheeeeeeeee
Confidence            46999999999999999999999998657777766532110 001110     0000  001223345689999998865


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ........++...|.....++++.+++... ..++++|.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v-~~~i~~Ss  111 (212)
T d2a35a1          74 IKEAGSEEAFRAVDFDLPLAVGKRALEMGA-RHYLVVSA  111 (212)
T ss_dssp             HHHHSSHHHHHHHHTHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             ccccccccccccchhhhhhhcccccccccc-cccccccc
Confidence            433344567888899999999999987543 35666653

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.76  E-value=2.5e-08  Score=77.06  Aligned_cols=110  Identities=15%  Similarity=-0.018  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      +|.+|+|+||+|++|++++..|++.|+--.|+.+.+++.  ...++.... .....+.....++.++++++|.||++++.
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~--~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ--GKEKIGGEA-DVFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHH--HHHHTTCCT-TEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHH--HHHhccCCc-EEEEeeeccccccccccccceeeEEEEee
Confidence            456999999999999999999999997224555555432  222222211 10000011123467789999999999875


Q ss_pred             CCCC---------------CCChhHHHHHHHHHHHHHHHHHHhhCCCe
Q 028437          107 PRKP---------------GMTRDDLFNINAGIVKDLCSAIAKYCPNA  139 (209)
Q Consensus       107 ~~~~---------------g~~r~~~~~~N~~~~~~i~~~i~~~~p~~  139 (209)
                      ....               ..........|+...++++..........
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (252)
T d2q46a1          79 VPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKH  126 (252)
T ss_dssp             CCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSE
T ss_pred             ccccccccchhhhhhcccccccchhhhccccccceeeccccccccccc
Confidence            3210               01123345678888888888887766543

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=8.2e-09  Score=85.67  Aligned_cols=109  Identities=18%  Similarity=0.098  Sum_probs=70.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC--------chh---HHHhhcCCCCCcceeEee----cCCchhhh
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--------TPG---VAADVGHINTRSEVAGYM----GNDQLGQA   93 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~--------~~~---~~~dl~~~~~~~~v~~~~----~~~d~~~a   93 (209)
                      .||+||||+||||++|+..|++.|+  +|+.+|+..        ...   ....+...    ++..+.    ..+.++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Dl~d~~~l~~~   76 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELTGR----SVEFEEMDILDQGALQRL   76 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHHTC----CCEEEECCTTCHHHHHHH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCccccccccchHHHHHHHHhcCC----CcEEEEeecccccccccc
Confidence            3899999999999999999999999  999998621        000   11112211    111111    11234555


Q ss_pred             cCCCC--EEEEcCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 028437           94 LEDSD--VVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (209)
Q Consensus        94 ~~~aD--~Vi~~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~  144 (209)
                      +.+.|  +|+|+|+.+....  .++.+.+..|+..+.++++++++++.. +++++
T Consensus        77 ~~~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~-~~i~~  130 (346)
T d1ek6a_          77 FKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFS  130 (346)
T ss_dssp             HHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEE
T ss_pred             ccccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcc-ccccc
Confidence            55554  6888887653111  245677889999999999999987654 45554

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.71  E-value=8.2e-08  Score=71.84  Aligned_cols=90  Identities=18%  Similarity=0.215  Sum_probs=60.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      |||+|+|+ |.+|+.++..|.+.|+  +|+.+|+++... .+.+..-.+      ..  .++ .+++++||+||++.  |
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~~~~~------~~--~~~-~~~~~~~DiIilav--p   66 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVERQLVD------EA--GQD-LSLLQTAKIIFLCT--P   66 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTTSCS------EE--ESC-GGGGTTCSEEEECS--C
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHhhccc------ee--eee-cccccccccccccC--c
Confidence            79999999 9999999999999999  999999975311 112221111      11  123 47899999999985  2


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                                    ...+.++++.+.++. ++.+++.+++
T Consensus        67 --------------~~~~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          67 --------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             --------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------Hhhhhhhhhhhhhhcccccceeeccc
Confidence                          123455666666654 5666555543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=1.9e-08  Score=74.90  Aligned_cols=101  Identities=16%  Similarity=0.151  Sum_probs=66.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      |||+|+|+ |.+|+.++..|.+.|+  +|.++++++....................  ..+..++..++|+||++.... 
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~iii~vka~-   74 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYCSVNLVETDGSIFNESL--TANDPDFLATSDLLLVTLKAW-   74 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEEEEEEECTTSCEEEEEE--EESCHHHHHTCSEEEECSCGG-
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--ceEEEEcCHHHhhhhccccCCcccccccc--ccchhhhhcccceEEEeeccc-
Confidence            79999999 9999999999999999  99999997532221111111111111111  123357788999999996322 


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCCCCC
Q 028437          109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (209)
Q Consensus       109 ~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP~~~  150 (209)
                                     .+.+.++.+..+- ++..++.+.|-.+.
T Consensus        75 ---------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~~  102 (167)
T d1ks9a2          75 ---------------QVSDAVKSLASTLPVTTPILLIHNGMGT  102 (167)
T ss_dssp             ---------------GHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred             ---------------chHHHHHhhccccCcccEEeeccCcccH
Confidence                           1245566666554 67788888887763

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.2e-08  Score=84.37  Aligned_cols=115  Identities=11%  Similarity=0.010  Sum_probs=72.4

Q ss_pred             CeE-EEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch---hHHHhhcCCC---CCcceeEeec----CCchhhhcC--
Q 028437           29 RKV-AVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHIN---TRSEVAGYMG----NDQLGQALE--   95 (209)
Q Consensus        29 ~kI-~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~---~~~~dl~~~~---~~~~v~~~~~----~~d~~~a~~--   95 (209)
                      +|| +||||+||+|++|+..|+++|+  +|+.+|+....   ....++....   ....++.+.+    ...+.++++  
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV   78 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc
Confidence            389 7999999999999999999999  99999996421   1111111111   1112222211    112333443  


Q ss_pred             CCCEEEEcCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhhCC--CeEEEEec
Q 028437           96 DSDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMIS  145 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p--~~~viv~s  145 (209)
                      +.++|+++++......  ....++...|+..+.++.+++++.+.  ..++|.+|
T Consensus        79 ~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~S  132 (347)
T d1t2aa_          79 KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS  132 (347)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             ccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEec
Confidence            5678888876543111  23456678899999999999998763  34677665

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=2.3e-08  Score=81.60  Aligned_cols=98  Identities=13%  Similarity=0.100  Sum_probs=67.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhc--CCCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL--EDSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~--~~aD~Vi~~ag~  106 (209)
                      +||+||||+||+|++|+..|+++|+  +++++|....    .++.+..            ..++.+  .+.|.|+++++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~~~----~~~~~~~------------~~~~~~~~~~~d~v~~~a~~   64 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLDSR------------AVHDFFASERIDQVYLAAAK   64 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTCHH------------HHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCchh----ccccCHH------------HHHHHHhhcCCCEEEEcchh
Confidence            4999999999999999999999998  7777766321    1111111            112222  257999999865


Q ss_pred             CCCC---CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          107 PRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       107 ~~~~---g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ....   .....+++..|+..+.++++++.+++-. ++|++|
T Consensus        65 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~-~~i~~S  105 (315)
T d1e6ua_          65 VGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLG  105 (315)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            4211   1245677889999999999999887533 466664

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.64  E-value=2.4e-08  Score=82.67  Aligned_cols=116  Identities=16%  Similarity=0.003  Sum_probs=74.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhH---HHhhcCCCCCcceeEeec-C---CchhhhcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGV---AADVGHINTRSEVAGYMG-N---DQLGQALEDS   97 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~---~~dl~~~~~~~~v~~~~~-~---~d~~~a~~~a   97 (209)
                      ++++|+||||+||+|++|+..|.+.|+  +|..+|+...  ...   ...+........++.+.. .   ........+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~   92 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV   92 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc
Confidence            456899999999999999999999999  9999997421  111   111111100011222111 1   1234567788


Q ss_pred             CEEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        98 D~Vi~~ag~~~~~--g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      |.|++++.....+  ..+....+..|+..+.++++.+.+.... ++|..|
T Consensus        93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~-~~i~~S  141 (341)
T d1sb8a_          93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAA  141 (341)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCc-eEEEcc
Confidence            9999987654311  1344567789999999999999987644 455554

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.64  E-value=2.2e-08  Score=79.96  Aligned_cols=90  Identities=21%  Similarity=0.233  Sum_probs=62.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcC--CCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aD~Vi~~ag~  106 (209)
                      |||+|+|||||+|++|+..|..+|+  +|+.+|+++.     |+.+.            .++++.++  +.|+||++++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~~-----D~~d~------------~~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV--EVIPTDVQDL-----DITNV------------LAVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTTC-----CTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechhc-----cCCCH------------HHHHHHHHHcCCCEEEeeccc
Confidence            7999999999999999999999999  9999998531     22221            12344554  67999999876


Q ss_pred             CCCCC--CChhHHHHHHHHHHHHHHHHHHhhCC
Q 028437          107 PRKPG--MTRDDLFNINAGIVKDLCSAIAKYCP  137 (209)
Q Consensus       107 ~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~~p  137 (209)
                      .....  .........|......+.+.+.....
T Consensus        63 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~   95 (281)
T d1vl0a_          63 TAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA   95 (281)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC
T ss_pred             cccccccccchhhcccccccccccccccccccc
Confidence            43111  12344556677777777777766543

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.59  E-value=1.3e-08  Score=83.73  Aligned_cols=105  Identities=11%  Similarity=-0.049  Sum_probs=65.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch---hHHHhhcCCC---CCcceeEee-cCC---chhhhc--CC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHIN---TRSEVAGYM-GND---QLGQAL--ED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~---~~~~dl~~~~---~~~~v~~~~-~~~---d~~~a~--~~   96 (209)
                      ++++|||||||+|++|+..|+++|+  +|+.+|+....   .....+....   ....+.... +..   .+++++  .+
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~   79 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK   79 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC--EEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhc
Confidence            4899999999999999999999999  99999985310   1111111110   011122211 111   233333  36


Q ss_pred             CCEEEEcCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHhh
Q 028437           97 SDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKY  135 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g--~~r~~~~~~N~~~~~~i~~~i~~~  135 (209)
                      .|+|+|+|+......  .+..+....|...+.++.+++++.
T Consensus        80 ~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~  120 (339)
T d1n7ha_          80 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH  120 (339)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             cchhhhccccccccccccCccccccccccccchhhhhhhhc
Confidence            799999998653221  234566788888888888887754

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=98.58  E-value=3e-08  Score=79.96  Aligned_cols=106  Identities=15%  Similarity=0.033  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-----h-HHHhhcCCCCCcceeE-eecCCchhhhcCCCCE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-----G-VAADVGHINTRSEVAG-YMGNDQLGQALEDSDV   99 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-----~-~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aD~   99 (209)
                      +++||+|+||||++|++++..|++.|+  +|++++|++..     . ....+...... .+.. +....++.+++++++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~v~-~v~~d~~d~~~~~~~~~~~~~   78 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFKQLGAK-LIEASLDDHQRLVDALKQVDV   78 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHHTTTCE-EECCCSSCHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCcccchhHHHHHhhhccCCcE-EEEeecccchhhhhhccCcch
Confidence            456999999999999999999999999  99999986421     1 11122222111 0110 1112345678899999


Q ss_pred             EEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ++++++....         ..|.....++++++.+.... .+++.|
T Consensus        79 ~~~~~~~~~~---------~~~~~~~~~~l~~a~~~~~~-~~v~~S  114 (312)
T d1qyda_          79 VISALAGGVL---------SHHILEQLKLVEAIKEAGNI-KRFLPS  114 (312)
T ss_dssp             EEECCCCSSS---------STTTTTHHHHHHHHHHSCCC-SEEECS
T ss_pred             hhhhhhhccc---------ccchhhhhHHHHHHHHhcCC-cEEEEe
Confidence            9998764321         12233334556666654433 344443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.47  E-value=2.4e-06  Score=63.69  Aligned_cols=96  Identities=18%  Similarity=0.238  Sum_probs=60.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      |+||+|+|+ |.+|.+++..|.+.|+..+|+.+|+++.. ..+.+....+   ..  .  +........++|+|+++.. 
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~---~~--~--~~~~~~~~~~~dlIila~p-   71 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIID---EG--T--TSIAKVEDFSPDFVMLSSP-   71 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCS---EE--E--SCGGGGGGTCCSEEEECSC-
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcch---hh--h--hhhhhhhccccccccccCC-
Confidence            347999999 99999999999999875589999997521 1222222211   11  1  1122344568999999852 


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                                     .+.+.++++.+..+. ++..++-++..
T Consensus        72 ---------------~~~~~~vl~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          72 ---------------VRTFREIAKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             ---------------HHHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             ---------------chhhhhhhhhhhccccccccccccccc
Confidence                           123355556666554 56666656554

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=98.43  E-value=1.7e-06  Score=71.34  Aligned_cols=104  Identities=18%  Similarity=0.159  Sum_probs=66.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeec--CC---chhhhcCCCCEEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG--ND---QLGQALEDSDVVI  101 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~--~~---d~~~a~~~aD~Vi  101 (209)
                      ++++|+|+||||++|++++..|++.|+  +|+++-|++.......+....   .++.+..  .+   .++++++++|.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~---~v~~~~gD~~d~~~~~~~a~~~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAIP---NVTLFQGPLLNNVPLMDTLFEGAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTST---TEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC--eEEEEECCcchhhhhhhcccC---CCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence            345899999999999999999999999  999998876433333333221   1111111  11   2456889999988


Q ss_pred             EcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +......          ..+....+++++++.+.+-...++..|
T Consensus        77 ~~~~~~~----------~~~~~~~~~~~~aa~~agv~~~v~~Ss  110 (350)
T d1xgka_          77 INTTSQA----------GDEIAIGKDLADAAKRAGTIQHYIYSS  110 (350)
T ss_dssp             ECCCSTT----------SCHHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred             eeccccc----------chhhhhhhHHHHHHHHhCCCceEEEee
Confidence            8643211          234556677888888766444444444

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=8.9e-07  Score=70.79  Aligned_cols=105  Identities=12%  Similarity=0.108  Sum_probs=67.7

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeec-C--CchhhhcCCCCEEEEcCCCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-N--DQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~-~--~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      |+||||+||+|++|+..|+++|+ .+|+.+|+-........+.+.... ....... .  ......+..+++|+++|+..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~-~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~   79 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLNIA-DYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGGGHHHHTSCCS-EEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCC-CeEEEEECCCCcchhhcccccchh-hhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence            89999999999999999999994 279999853221111122222111 1110000 0  00123457889999998866


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhCC
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCP  137 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p  137 (209)
                      .....+...+...|......+.+.+.+.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i  109 (307)
T d1eq2a_          80 STTEWDGKYMMDNNYQYSKELLHYCLEREI  109 (307)
T ss_dssp             CTTCCCHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            555556666777788899999998887764

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.43  E-value=2.7e-07  Score=68.89  Aligned_cols=64  Identities=23%  Similarity=0.258  Sum_probs=49.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||+|+|. |.+|+.++..|++.|+  +|+.+|+++.  ...++.....    ..   ..+.+++++++|+||.+.
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~--~V~~~d~~~~--~~~~~~~~~~----~~---~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPE--AIADVIAAGA----ET---ASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHHTTC----EE---CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCC--eEEEEeCCcc--hhHHHHHhhh----hh---cccHHHHHhCCCeEEEEc
Confidence            79999999 9999999999999999  9999999753  2223333221    11   235688899999999985

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=98.35  E-value=2.1e-07  Score=74.10  Aligned_cols=76  Identities=22%  Similarity=0.182  Sum_probs=49.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch----hHH---HhhcCCCCCccee-EeecCCchhhhcCCCCE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP----GVA---ADVGHINTRSEVA-GYMGNDQLGQALEDSDV   99 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~----~~~---~dl~~~~~~~~v~-~~~~~~d~~~a~~~aD~   99 (209)
                      ++||+|+||||++|++++..|++.|+  +|++++|+...    ...   ..+...... .+. +.....+..++++++|.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~   79 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKASGAN-IVHGSIDDHASLVEAVKNVDV   79 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHTTTCE-EECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCCccccchhHHHHHHhhccCCcE-EEEeecccchhhhhhhhhcee
Confidence            45999999999999999999999999  99999996421    111   112221110 000 01111234577889999


Q ss_pred             EEEcCCC
Q 028437          100 VIIPAGV  106 (209)
Q Consensus       100 Vi~~ag~  106 (209)
                      |+++++.
T Consensus        80 vi~~~~~   86 (307)
T d1qyca_          80 VISTVGS   86 (307)
T ss_dssp             EEECCCG
T ss_pred             eeecccc
Confidence            9998754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=7e-06  Score=65.59  Aligned_cols=118  Identities=19%  Similarity=0.244  Sum_probs=73.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cCC----------chhhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND----------QLGQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~----------d~~~a~~   95 (209)
                      +.++||||++.+|.+++..|++.|.  +|++.++++.  .....++.......++..+. +-+          ...+.+.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            3688999999999999999999999  9999999752  22233444332222222211 111          1233356


Q ss_pred             CCCEEEEcCCCCCCCC---CCh---hHHHHHHH----HHHHHHHHHHHhhC-CCeEEEEecCCC
Q 028437           96 DSDVVIIPAGVPRKPG---MTR---DDLFNINA----GIVKDLCSAIAKYC-PNAIVNMISNPV  148 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~r---~~~~~~N~----~~~~~i~~~i~~~~-p~~~viv~snP~  148 (209)
                      ..|++|+.||......   .+.   ...+..|+    -.++.+++.+++.. ..+.+|+++...
T Consensus        89 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~  152 (257)
T d1xg5a_          89 GVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMS  152 (257)
T ss_dssp             CCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGG
T ss_pred             CCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechH
Confidence            7899999998753211   222   23345553    44556667766655 467888887544

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.32  E-value=1.1e-06  Score=65.49  Aligned_cols=65  Identities=22%  Similarity=0.348  Sum_probs=49.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |+||+++|. |.+|+.++..|++.|+  +|.+||+++..  ..++.....   ..    ..++.++++++|+|+.+.
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~g~--~v~~~d~~~~~--~~~~~~~~~---~~----~~~~~e~~~~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQSA--VDGLVAAGA---SA----ARSARDAVQGADVVISML   65 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHHTTC---EE----CSSHHHHHTSCSEEEECC
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHCCC--eEEEEECchhh--hhhhhhhhc---cc----cchhhhhccccCeeeecc
Confidence            569999999 9999999999999999  99999997532  223333221   11    235678999999999985

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.32  E-value=1.8e-06  Score=62.12  Aligned_cols=114  Identities=21%  Similarity=0.248  Sum_probs=66.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCC-CCCcceeEe-ecCCchhhh-cCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-NTRSEVAGY-MGNDQLGQA-LEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~-~~~~~v~~~-~~~~d~~~a-~~~aD~Vi~~ag  105 (209)
                      |||.|+|+ |.+|+.++..|.+.|+  +|+++|.++..  ..++... ... .+.+. ...+-++++ ++++|.++.+..
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~--~v~vid~d~~~--~~~~~~~~~~~-vi~Gd~~~~~~l~~~~i~~a~~vv~~t~   74 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDI--CKKASAEIDAL-VINGDCTKIKTLEDAGIEDADMYIAVTG   74 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHCSSE-EEESCTTSHHHHHHTTTTTCSEEEECCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--CcceecCChhh--hhhhhhhhhhh-hccCcccchhhhhhcChhhhhhhcccCC
Confidence            79999999 9999999999999999  99999998632  1122211 110 11110 001113333 689999998742


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig  172 (209)
                      .           -..|+..    +..+++++++.++..+.+|..      .+.+++.+   .+.++.
T Consensus        75 ~-----------d~~N~~~----~~~~k~~~~~~iI~~~~~~~~------~~~l~~~G---~d~vi~  117 (132)
T d1lssa_          75 K-----------EEVNLMS----SLLAKSYGINKTIARISEIEY------KDVFERLG---VDVVVS  117 (132)
T ss_dssp             C-----------HHHHHHH----HHHHHHTTCCCEEEECSSTTH------HHHHHHTT---CSEEEC
T ss_pred             c-----------HHHHHHH----HHHHHHcCCceEEEEecCHHH------HHHHHHCC---CCEEEC
Confidence            1           1445422    233445666655555566543      34455543   445543

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=2.8e-06  Score=62.58  Aligned_cols=98  Identities=14%  Similarity=0.189  Sum_probs=59.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-C-ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNP-L-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g-~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |.||+|+||||+||+.++..|+++. + ..+++++......+..........  ....   ..+ .++++++|++|++++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~--~~~~---~~~-~~~~~~~DivF~a~~   74 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTG--TLQD---AFD-LEALKALDIIVTCQG   74 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCC--BCEE---TTC-HHHHHTCSEEEECSC
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCce--eeec---ccc-hhhhhcCcEEEEecC
Confidence            4589999999999999998777664 2 458888876543222111222111  1111   123 356889999999963


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                                      .+..+++++.+.+...+.+  +++|..+
T Consensus        75 ----------------~~~s~~~~~~~~~~g~~~~--VID~Ss~  100 (146)
T d1t4ba1          75 ----------------GDYTNEIYPKLRESGWQGY--WIDAASS  100 (146)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCCE--EEECSST
T ss_pred             ----------------chHHHHhhHHHHhcCCCee--cccCCcc
Confidence                            1334666777766544433  4666555

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.24  E-value=8.3e-06  Score=59.69  Aligned_cols=42  Identities=14%  Similarity=0.350  Sum_probs=35.4

Q ss_pred             ccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        21 ~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      |-.+...++||+|||+.|.+|+.++..|.+.|+  +|.++|+++
T Consensus         2 ~~~~~~~~~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~   43 (152)
T d2pv7a2           2 FKTINSDIHKIVIVGGYGKLGGLFARYLRASGY--PISILDRED   43 (152)
T ss_dssp             CCCSCTTCCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTC
T ss_pred             CcccCCCCCeEEEEcCCCHHHHHHHHHHHHcCC--CcEeccccc
Confidence            334445567999999559999999999999999  999999964

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.23  E-value=1e-06  Score=65.15  Aligned_cols=65  Identities=14%  Similarity=0.238  Sum_probs=47.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||+++|+ |.+|++++..|+..++  ++.++++++.+  ..++.... .  +..   ..+.+++++++|+||++.
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~--~i~v~~r~~~~--~~~l~~~~-g--~~~---~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLER--SKEIAEQL-A--LPY---AMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHH--HHHHHHHH-T--CCB---CSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCC--eEEEEcChHHh--HHhhcccc-c--eee---echhhhhhhccceeeeec
Confidence            79999999 9999999999999998  99999987422  22222110 0  111   235678899999999986

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.23  E-value=1.9e-06  Score=65.96  Aligned_cols=73  Identities=19%  Similarity=0.247  Sum_probs=47.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCC------------CcceeEeecCCchhhhcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT------------RSEVAGYMGNDQLGQALED   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~------------~~~v~~~~~~~d~~~a~~~   96 (209)
                      |||+|+|. |++|..++..+ .+|+  +|+.+|.++.  ....+.....            ........ +.+...+..+
T Consensus         1 MkI~ViGl-G~vGl~~a~~~-a~g~--~V~g~Din~~--~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~-~~~~~~~~~~   73 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLL-SLQN--EVTIVDILPS--KVDKINNGLSPIQDEYIEYYLKSKQLSIKA-TLDSKAAYKE   73 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHH-TTTS--EEEEECSCHH--HHHHHHTTCCSSCCHHHHHHHHHSCCCEEE-ESCHHHHHHH
T ss_pred             CEEEEECC-ChhHHHHHHHH-HCCC--cEEEEECCHH--HHHHHhhcccccchhhHHHHhhhhhhhhhc-cchhhhhhhc
Confidence            79999998 99999998766 4698  9999999852  1112221100            00111111 2345677889


Q ss_pred             CCEEEEcCCCCC
Q 028437           97 SDVVIIPAGVPR  108 (209)
Q Consensus        97 aD~Vi~~ag~~~  108 (209)
                      +|+++++.+.+.
T Consensus        74 ~~ii~v~vpt~~   85 (196)
T d1dlja2          74 AELVIIATPTNY   85 (196)
T ss_dssp             CSEEEECCCCCE
T ss_pred             cccccccCCccc
Confidence            999999977664

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.21  E-value=1.1e-06  Score=67.35  Aligned_cols=77  Identities=17%  Similarity=0.188  Sum_probs=53.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCC-CCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHIN-TRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~-~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ++|+|+||+|.+|..++..|++.|.  +|+++++++.+  .....+.... .....-+....+++++++.++|+||+++|
T Consensus        24 K~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin~Ag  101 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGA  101 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeeecCc
Confidence            5999999999999999999999998  99999998522  1222222111 11111112223457788999999999998


Q ss_pred             CC
Q 028437          106 VP  107 (209)
Q Consensus       106 ~~  107 (209)
                      .+
T Consensus       102 ~g  103 (191)
T d1luaa1         102 IG  103 (191)
T ss_dssp             TT
T ss_pred             cc
Confidence            64

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=6.4e-06  Score=58.93  Aligned_cols=71  Identities=18%  Similarity=0.257  Sum_probs=47.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhh-cCCCCEEEEcCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA-LEDSDVVIIPAG  105 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a-~~~aD~Vi~~ag  105 (209)
                      ++.|+|+ |.+|+.++..|.+.|+  +++++|.++.  ...++.+......+.+......++++ +++||.||.+.+
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~~g~--~vvvid~d~~--~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~   73 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEE--KVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIG   73 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHH--HHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCC--eEEEecCcHH--HHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcC
Confidence            6899999 9999999999999999  9999999853  23334433221111111112234444 789999988753

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=98.17  E-value=3.2e-06  Score=62.34  Aligned_cols=97  Identities=15%  Similarity=0.154  Sum_probs=59.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-C-ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNP-L-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g-~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      |||+|+||||++|+.++..|+... + ..++..+......++...+....  ..+..   ..+ .+.++++|+||++.+.
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~--~~~~~---~~~-~~~~~~~DvvF~alp~   74 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDA--GMLHD---AFD-IESLKQLDAVITCQGG   74 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCC--CBCEE---TTC-HHHHTTCSEEEECSCH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcc--eeeec---ccc-hhhhccccEEEEecCc
Confidence            799999999999999998777643 3 34777776543222221111111  01111   123 4668999999999531


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                                      ...+++++.+.+.+...+  ++.|..+
T Consensus        75 ----------------~~s~~~~~~l~~~g~~~~--VIDlSsd   99 (147)
T d1mb4a1          75 ----------------SYTEKVYPALRQAGWKGY--WIDAAST   99 (147)
T ss_dssp             ----------------HHHHHHHHHHHHTTCCSE--EEESSST
T ss_pred             ----------------hHHHHHhHHHHHcCCceE--EEeCCcc
Confidence                            334677777776665544  4666666

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=6.4e-06  Score=65.31  Aligned_cols=116  Identities=16%  Similarity=0.226  Sum_probs=69.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCC-CcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ++++||||++.+|..++..|++.|.  +|++.|+++..  ....++..... ..++......+..-+.+...|++|+.||
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnnAg   85 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNAA   85 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEeccc
Confidence            5899999999999999999999999  99999997521  12223322110 0111110000112234567899999998


Q ss_pred             CCCCCC---CCh---hHHHHHHHH----HHHHHHHHHHhhCCCeEEEEecC
Q 028437          106 VPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       106 ~~~~~g---~~r---~~~~~~N~~----~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ......   .+.   ...+..|+.    ..+.+++.+.+....+.+++++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS  136 (244)
T d1pr9a_          86 VALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSS  136 (244)
T ss_dssp             CCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             cccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccc
Confidence            764221   222   234555655    44555555555555677887764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.15  E-value=1.6e-05  Score=63.32  Aligned_cols=113  Identities=26%  Similarity=0.320  Sum_probs=69.9

Q ss_pred             eE-EEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cCC----------chhhhcC
Q 028437           30 KV-AVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND----------QLGQALE   95 (209)
Q Consensus        30 kI-~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~----------d~~~a~~   95 (209)
                      || +||||++.+|..++..|+++|.  +|++.|+++.  +....++.+...  ++..+. +-+          ...+.+.
T Consensus         2 KValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLG   77 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            66 7889999999999999999999  9999999752  222334433221  111110 011          1123356


Q ss_pred             CCCEEEEcCCCCCCCC---CCh---hHHHHHHHHHHH----HHHHHHHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVK----DLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~r---~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~sn  146 (209)
                      ..|++|+.||......   .+.   ...+..|+....    .+++.+.+....+.++++|.
T Consensus        78 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS  138 (255)
T d1gega_          78 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACS  138 (255)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccc
Confidence            7899999999754221   232   334566765444    44555566666777777763

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=5.5e-06  Score=65.68  Aligned_cols=114  Identities=16%  Similarity=0.182  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCC-CcceeEeecCCchhh---hcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINT-RSEVAGYMGNDQLGQ---ALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~-~~~v~~~~~~~d~~~---a~~~aD~Vi~  102 (209)
                      ++++||||++.+|..++..|++.|.  +|++.|+++.+  ....++..... ..++..   .++.++   .+...|++|+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~g~iDilVn   80 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGIEPVCVDLGD---WDATEKALGGIGPVDLLVN   80 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHTTCCCCSEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC---HHHHHHHHHHcCCCeEEEE
Confidence            4789999999999999999999999  99999997521  12223322110 011111   111222   3457899999


Q ss_pred             cCCCCCCCC---CCh---hHHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCC
Q 028437          103 PAGVPRKPG---MTR---DDLFNINAGIVK----DLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       103 ~ag~~~~~g---~~r---~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~snP  147 (209)
                      .||......   .+.   ...+..|+....    .+.+.+.+....+.+|+++..
T Consensus        81 nAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~  135 (242)
T d1cyda_          81 NAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSM  135 (242)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             CCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchh
Confidence            999754221   222   234555655444    444554444556777777643

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.13  E-value=3.8e-06  Score=63.12  Aligned_cols=101  Identities=24%  Similarity=0.298  Sum_probs=72.4

Q ss_pred             chhhhhhhhccccccccccccCCCC---CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCC
Q 028437            2 RSSVLRSVKTLAKPAGARGYSSESV---PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINT   77 (209)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~   77 (209)
                      |-+++-.-+.|.++.+|++.+-...   ++-||+|+|| |-+|.+-+..++..|-  +|.++|.+... ....+....  
T Consensus         3 ~~av~~ga~~L~~~~gG~G~Llgg~~gv~pa~V~ViGa-GvaG~~A~~~A~~lGA--~V~~~D~~~~~l~~l~~~~~~--   77 (168)
T d1pjca1           3 RLSVQFGARFLERQQGGRGVLLGGVPGVKPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGS--   77 (168)
T ss_dssp             HHHHHHHHHHTSGGGTSCCCCTTCBTTBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG--
T ss_pred             HHHHHHHHHHhhhhcCCcEEEecCCCCCCCcEEEEECC-ChHHHHHHHHHhhCCC--EEEEEeCcHHHHHHHHHhhcc--
Confidence            3466777788999999999766544   5789999999 9999999999999997  99999997521 111111111  


Q ss_pred             CcceeE-eecCCchhhhcCCCCEEEEcCCCCCC
Q 028437           78 RSEVAG-YMGNDQLGQALEDSDVVIIPAGVPRK  109 (209)
Q Consensus        78 ~~~v~~-~~~~~d~~~a~~~aD~Vi~~ag~~~~  109 (209)
                        .+.. ......+++++++||+||-++-.|.+
T Consensus        78 --~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          78 --RVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             --GSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             --cceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence              1111 11223578899999999999877643

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.09  E-value=2.4e-06  Score=62.86  Aligned_cols=64  Identities=17%  Similarity=0.231  Sum_probs=46.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||+|+|. |.+|+.++..|.+.|+  ++..+|+++...... ... ..  .+.     .+..+++++||+||.+.
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~--~v~~~~~~~~~~~~~-~~~-~~--~~~-----~~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIE-RAR-TV--GVT-----ETSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHH-HHH-HH--TCE-----ECCHHHHHTSSEEEECS
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCC--eEEEEcCchhHHHHH-hhh-cc--ccc-----ccHHHHHhhcCeEEEEe
Confidence            79999999 9999999999999999  999999865322111 111 10  111     13468899999999995

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=98.05  E-value=1.7e-05  Score=59.60  Aligned_cols=71  Identities=17%  Similarity=0.260  Sum_probs=49.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCC-cceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .+|++||. |.+|..++..|++.|+  +|+.||+++.+  ..++...... ..........++.+++.++|.++.+.
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~   74 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLV   74 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHhccccccccchhhhhhhhhhhcccceEEEec
Confidence            38999999 9999999999999999  99999998632  2233222110 11111111234567889999999985

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.04  E-value=1.2e-05  Score=63.11  Aligned_cols=111  Identities=19%  Similarity=0.264  Sum_probs=68.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      ++++||||++.+|..++..|++.|.  +|++.|+++.  ...+..+....++++..  .+...+.+...|++|+.||.+.
T Consensus         5 K~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~~--~l~~~~~~~~~~Dv~~~--~~~~~~~~g~iD~lVnnAG~~~   78 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEE--LLKRSGHRYVVCDLRKD--LDLLFEKVKEVDILVLNAGGPK   78 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHTCSEEEECCTTTC--HHHHHHHSCCCSEEEECCCCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHH--HHHhcCCcEEEcchHHH--HHHHHHHhCCCcEEEecccccC
Confidence            5799999999999999999999999  9999999742  11222221111111100  0124456778999999999764


Q ss_pred             CCC---CChh---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEecC
Q 028437          109 KPG---MTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       109 ~~g---~~r~---~~~~~N~~----~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ...   .+.+   ..+..|+.    .++.+++.+++. +.+.+|+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-~~G~ii~i~S  125 (234)
T d1o5ia_          79 AGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK-GWGRIVAITS  125 (234)
T ss_dssp             CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccc-cccccccccc
Confidence            221   2222   33455655    445555666553 4566666653

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=6.5e-05  Score=59.40  Aligned_cols=117  Identities=20%  Similarity=0.297  Sum_probs=72.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cCCc---h-------hhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---L-------GQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~-------~~a~~   95 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  +....++.....  ++..+. +.+|   .       .+.+.
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLGA--KVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            4688999999999999999999999  9999999752  223333432211  111111 1111   1       23455


Q ss_pred             CCCEEEEcCCCCCCCCCC------hhHHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCCCCC
Q 028437           96 DSDVVIIPAGVPRKPGMT------RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNS  150 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g~~------r~~~~~~N~~----~~~~i~~~i~~~~p~~~viv~snP~~~  150 (209)
                      ..|++|+.||........      ..+.+..|+.    .++.+++.+.+. ..+.++++|.....
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~G~Iv~isS~~~~  147 (244)
T d1yb1a_          84 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAAGH  147 (244)
T ss_dssp             CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC-C
T ss_pred             CCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhc-CCceEEEeecchhc
Confidence            789999999976432211      2234555544    445566666553 56788888766554

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.01  E-value=4.1e-06  Score=65.80  Aligned_cols=115  Identities=15%  Similarity=0.071  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCCCcceeEee-cCCchhhh--cCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYM-GNDQLGQA--LEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~~~v~~~~-~~~d~~~a--~~~aD~Vi~~a  104 (209)
                      .||+||||+|.+|..++..|++.|+  +|+++|+++... ........... ...... ......+.  ....|++|+.|
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~iD~linnA   79 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQADSNILVDGNKN-WTEQEQSILEQTASSLQGSQVDGVFCVA   79 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTSSEEEECCTTSC-HHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCchhcccccceeccccC-chhHHHHHHHHHHHHhcCCCeeEEEECC
Confidence            4899999999999999999999998  999999974211 00000000000 000000 00011222  23469999999


Q ss_pred             CCCCC--C-CCC----hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437          105 GVPRK--P-GMT----RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus       105 g~~~~--~-g~~----r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      |....  + ..+    ....+..|+.....+++.+.++- +.+.++++|.
T Consensus        80 G~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS  129 (235)
T d1ooea_          80 GGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGA  129 (235)
T ss_dssp             CCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEecc
Confidence            86421  1 112    22246677766666666555543 3567887764

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.99  E-value=5.6e-05  Score=59.87  Aligned_cols=114  Identities=14%  Similarity=0.152  Sum_probs=70.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cCCc----------hhhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ----------LGQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~a~~   95 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  +....++....   .+..+. +-+|          ..+.+.
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTPD---QIQFFQHDSSDEDGWTKLFDATEKAFG   81 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCC---cEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4788999999999999999999999  9999999752  22233343221   121111 1111          223345


Q ss_pred             CCCEEEEcCCCCCCCC---CChh---HHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPG---MTRD---DLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~r~---~~~~~N~~~----~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ..|++|+.||......   .+.+   ..+..|+..    ++..++.|.+....+.+|++|..
T Consensus        82 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~  143 (251)
T d1zk4a1          82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI  143 (251)
T ss_dssp             SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred             CceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeecc
Confidence            7899999998754221   2333   345666655    44555555554445677887643

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.98  E-value=2.7e-05  Score=58.30  Aligned_cols=73  Identities=15%  Similarity=0.251  Sum_probs=46.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH--HHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~--~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||.|||. |.+|.+++..|+..|+  +|.+||+++.+..  ....................++...+..++.++.+.
T Consensus         2 MkIGvIGl-G~MG~~ma~~L~~~G~--~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILV   76 (178)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred             CEEEEEee-hHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEee
Confidence            79999999 9999999999999999  9999999753221  111111111112222111123345566777777764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=8.1e-05  Score=58.96  Aligned_cols=115  Identities=21%  Similarity=0.144  Sum_probs=71.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cCC---ch-------hhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QL-------GQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~-------~~a~~   95 (209)
                      +.++||||++.+|..++..|+++|.  +|++.|++..  .....++.......++..+. +-+   +.       .+.+.
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            4688999999999999999999999  9999999752  22233443322111222111 111   12       22345


Q ss_pred             CCCEEEEcCCCCCCCCCChhHHHHHHHH----HHHHHHHHHHhhC--CCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPGMTRDDLFNINAG----IVKDLCSAIAKYC--PNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g~~r~~~~~~N~~----~~~~i~~~i~~~~--p~~~viv~snP  147 (209)
                      ..|++|+.||....  .+..+.+..|+.    ..+..++.+.+..  ..+.||++|..
T Consensus        82 ~iDilVnnAg~~~~--~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~  137 (254)
T d2gdza1          82 RLDILVNNAGVNNE--KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL  137 (254)
T ss_dssp             CCCEEEECCCCCCS--SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CcCeeccccccccc--ccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccH
Confidence            78999999987642  344556666654    4555566665543  34678887643

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.95  E-value=5.4e-05  Score=60.27  Aligned_cols=113  Identities=19%  Similarity=0.225  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-c-C--C-------chhhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-G-N--D-------QLGQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~-~--~-------d~~~a~~   95 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  +....++.....  ++..+. + +  +       ...+.+.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRDFG   81 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4788999999999999999999999  9999999752  223334443321  111111 0 1  1       1123345


Q ss_pred             CCCEEEEcCCCCCCCC----CCh---hHHHHHHHHHH----HHHHHHHHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG----MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g----~~r---~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ..|++|+.||.....+    .+.   ...+..|+...    +.+++.+.+. ..+.+|++|.
T Consensus        82 ~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~isS  142 (260)
T d1zema1          82 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTAS  142 (260)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeeec
Confidence            7899999998653222    222   23455666544    4445555443 5677888863

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.95  E-value=2.3e-05  Score=62.16  Aligned_cols=116  Identities=18%  Similarity=0.202  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCCCcceeEeec----CCchhhhcCCCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aD~Vi~~  103 (209)
                      +.++||||++.+|..++..|+++|.  +|++.|+++... ...++......+++.....    .+...+.+...|++|+.
T Consensus         6 K~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnn   83 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVNN   83 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEEe
Confidence            4789999999999999999999999  999999975321 2222222111111111000    01123345688999999


Q ss_pred             CCCCCCC---CCCh---hHHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCC
Q 028437          104 AGVPRKP---GMTR---DDLFNINAGIVK----DLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       104 ag~~~~~---g~~r---~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~snP  147 (209)
                      ||.....   ..+.   ...+..|+....    .+.+.|++ ...+.||+++..
T Consensus        84 AG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~-~~~G~Ii~isS~  136 (248)
T d2d1ya1          84 AAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRK-VGGGAIVNVASV  136 (248)
T ss_dssp             CCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT-TTCEEEEEECCG
T ss_pred             CcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccc-cccccccccccc
Confidence            9975321   1222   234566665544    44455544 346778888644

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.95  E-value=6.9e-05  Score=59.20  Aligned_cols=113  Identities=17%  Similarity=0.266  Sum_probs=68.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee-c---CCch-------hhhcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQL-------GQALEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~-------~~a~~~a   97 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.+.....+.....  ++..+. +   .++.       .+.+...
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~G~i   81 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEAAIRNLGR--RVLTVKCDVSQPGDVEAFGKQVISTFGRC   81 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHcCC--cEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999999999999999999999  9999999763222222222111  111111 0   1111       2334578


Q ss_pred             CEEEEcCCCCCCCC---CC---hhHHHHHHHHHH----HHHHHHHHhhCCCeEEEEecC
Q 028437           98 DVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        98 D~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |++|+.||......   .+   ....+..|+...    +.+++.|++. ..+.+|++|.
T Consensus        82 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Iv~isS  139 (247)
T d2ew8a1          82 DILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN-GWGRIINLTS  139 (247)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhc-CCCCcccccc
Confidence            99999999754221   22   233455665544    4555555554 4577788763

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.93  E-value=4.8e-06  Score=61.07  Aligned_cols=71  Identities=21%  Similarity=0.274  Sum_probs=45.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      +|||+|+||||++|+.++..|.+++| ..++..+..+...++.......    .+....  .+ .+.+.++|++|++++
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~----~~~~~~--~~-~~~~~~~d~vf~a~p   73 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAES----SLRVGD--VD-SFDFSSVGLAFFAAA   73 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTE----EEECEE--GG-GCCGGGCSEEEECSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccc----cchhcc--ch-hhhhccceEEEecCC
Confidence            58999999999999999999976654 4488887665432322111111    111111  11 345678999999864

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.93  E-value=5.4e-05  Score=60.29  Aligned_cols=116  Identities=21%  Similarity=0.220  Sum_probs=68.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-c---CCc-------hhhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-G---NDQ-------LGQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~---~~d-------~~~a~~   95 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  .....++.......++..+. +   .++       ..+.+.
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            3788999999999999999999999  9999999752  11222222211111111111 1   111       123346


Q ss_pred             CCCEEEEcCCCCCCCC----CCh---hHHHHHHHHHHHHHH----HHHHhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPG----MTR---DDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g----~~r---~~~~~~N~~~~~~i~----~~i~~~~p~~~viv~snP  147 (209)
                      ..|++|+.||.....+    .+.   ...+..|+.....+.    +.+++. ..+.||++|..
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~isS~  144 (258)
T d1iy8a_          83 RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ-GSGMVVNTASV  144 (258)
T ss_dssp             CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCG
T ss_pred             CCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhh-cCCCCcccccH
Confidence            7899999999643222    232   234566765554444    444443 45667777643

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.93  E-value=8.2e-06  Score=64.45  Aligned_cols=113  Identities=18%  Similarity=0.210  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-----HHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-----~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      ++++||||++.+|..++..|++.|.  +|++.|+++....     ..|+.+..   .++.+  -+...+.+...|++|+.
T Consensus         8 K~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~v~~~--~~~~~~~~g~iDiLVnn   80 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSD---AVDRA--FTAVEEHQGPVEVLVSN   80 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHH---HHHHH--HHHHHHHHSSCSEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcchhcCceEEEEecCCHH---HHHHH--HHHHHHhcCCceEEEee
Confidence            4899999999999999999999999  9999999752111     11111111   01100  01233445678999999


Q ss_pred             CCCCCCC---CCCh---hHHHHHHHHHH----HHHHHHHHhhCCCeEEEEecCCCC
Q 028437          104 AGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus       104 ag~~~~~---g~~r---~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      ||.....   ..+.   ...+..|+...    +.+++.+.+ ...+.||++|.-..
T Consensus        81 AG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~g~Iv~isS~~~  135 (237)
T d1uzma1          81 AGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQR-NKFGRMIFIGSVSG  135 (237)
T ss_dssp             CSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEEEEECCCCC
T ss_pred             ecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccc-cCCCceEEEcchhh
Confidence            9975321   1222   33466666554    445555554 34667888875444

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.92  E-value=7e-05  Score=59.32  Aligned_cols=113  Identities=17%  Similarity=0.278  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cCCc----------hhhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ----------LGQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~a~~   95 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  +....++......  +..+. +-++          ..+.+.
T Consensus        11 KvalITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g~~--~~~~~~Dvt~~~~v~~~~~~~~~~~g   86 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFGYE--SSGYAGDVSKKEEISEVINKILTEHK   86 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTTCC--EEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCc--EEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            3566889999999999999999998  9999999752  2233445443211  11111 1111          123346


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHH----HHHHHHHHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ..|++|+.||......   .+   ....+..|+...    +.+++.+.+. ..+.||++|.
T Consensus        87 ~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS  146 (251)
T d2c07a1          87 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN-RYGRIINISS  146 (251)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccC-CCeEEEEECC
Confidence            8899999998754322   22   233455665544    4555555554 4678888874

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.91  E-value=3.3e-05  Score=60.95  Aligned_cols=115  Identities=23%  Similarity=0.205  Sum_probs=66.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEeec----CCchhhhcCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aD~Vi~  102 (209)
                      ++++||||++.+|..++..|++.|.  +|++.|+++..  ....++......+++.....    -+...+.+...|++|+
T Consensus         6 K~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVn   83 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEEE
Confidence            4789999999999999999999999  99999997521  11222221111111111000    0112233457899999


Q ss_pred             cCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh---CCCeEEEEec
Q 028437          103 PAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMIS  145 (209)
Q Consensus       103 ~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~---~p~~~viv~s  145 (209)
                      .||......   .+   ....+..|+.....+.+.+.++   .....+++.|
T Consensus        84 nAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~s  135 (242)
T d1ulsa_          84 YAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTA  135 (242)
T ss_dssp             CCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeec
Confidence            999764221   22   2345666766655555544433   2345555554

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.91  E-value=8.3e-06  Score=59.89  Aligned_cols=64  Identities=19%  Similarity=0.229  Sum_probs=44.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g-~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |||++||+ |.+|++++..|+..| +  +|.++|+++..  ..++....   .+..   .++. ++++++|+||++.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~~--~i~v~~r~~~~--~~~l~~~~---~~~~---~~~~-~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGGY--RIYIANRGAEK--RERLEKEL---GVET---SATL-PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSC--EEEEECSSHHH--HHHHHHHT---CCEE---ESSC-CCCCTTSEEEECS
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCCC--cEEEEeCChhH--HHHhhhhc---cccc---cccc-ccccccceEEEec
Confidence            79999999 999999999887766 6  99999997532  22232211   1111   1233 5578899999985

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.90  E-value=4.5e-05  Score=60.56  Aligned_cols=112  Identities=20%  Similarity=0.201  Sum_probs=70.4

Q ss_pred             eE-EEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-c---CCc-------hhhhcC
Q 028437           30 KV-AVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-G---NDQ-------LGQALE   95 (209)
Q Consensus        30 kI-~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~---~~d-------~~~a~~   95 (209)
                      || +||||++.+|..++..|++.|.  +|++.|+++.  +....++.....  ++..+. +   .++       ..+.+.
T Consensus         3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            55 6889999999999999999999  9999999752  222334433221  111111 0   111       123345


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhh-----CCCeEEEEec
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKY-----CPNAIVNMIS  145 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~-----~p~~~viv~s  145 (209)
                      ..|++|+.||......   .+   ..+.+..|+.....+.+.+.++     ...+.+++++
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~  139 (257)
T d2rhca1          79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIA  139 (257)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEEC
T ss_pred             CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccc
Confidence            7899999999764221   22   3345778888777777766542     2345677764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.89  E-value=0.00012  Score=58.00  Aligned_cols=113  Identities=15%  Similarity=0.161  Sum_probs=66.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee----cCCc-------hhhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM----GNDQ-------LGQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~----~~~d-------~~~a~~   95 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  .....++.+.. ..++..+.    ..++       ..+.+.
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEKFG   82 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4788999999999999999999999  9999999752  12222332211 00111110    0111       123345


Q ss_pred             CCCEEEEcCCCCCCCC---CCh---hHHHHHHHHHHH----HHHHHHHhhCCCeEEEEec
Q 028437           96 DSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVK----DLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~r---~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~s  145 (209)
                      ..|++|+.||......   .+.   ...+..|+....    .+++.|++. ..+.+|+++
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~i~  141 (251)
T d1vl8a_          83 KLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES-DNPSIINIG  141 (251)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC-SSCEEEEEC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc-ccccccccc
Confidence            7899999999754221   232   334566665544    444555433 345666664

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.4e-05  Score=63.56  Aligned_cols=114  Identities=18%  Similarity=0.149  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCC-CcceeEeec----CCchhhhcCCCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINT-RSEVAGYMG----NDQLGQALEDSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~-~~~v~~~~~----~~d~~~a~~~aD~Vi  101 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++..  ....++..... .+++.....    .+...+.+...|++|
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilV   84 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV   84 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            3789999999999999999999999  99999997521  12222322110 011110000    011233345789999


Q ss_pred             EcCCCCCCCC----CCh---hHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 028437          102 IPAGVPRKPG----MTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       102 ~~ag~~~~~g----~~r---~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      +.||....++    .+.   ...+..|+..    ++.+++.|++.  .+.+|++|.
T Consensus        85 nnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~isS  138 (250)
T d1ydea1          85 NNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISS  138 (250)
T ss_dssp             ECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred             ecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCccccc
Confidence            9998643222    222   2345666544    45555566543  367777763

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.87  E-value=0.00019  Score=57.17  Aligned_cols=112  Identities=18%  Similarity=0.256  Sum_probs=67.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee----cCCch-------hhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM----GNDQL-------GQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~----~~~d~-------~~a~~   95 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  +....++....   .+..+.    ..++.       .+.+.
T Consensus         7 KvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDEDVRNLVDTTIAKHG   81 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCC---ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4688999999999999999999999  9999999752  22334444322   111111    01122       23345


Q ss_pred             CCCEEEEcCCCCCC-C----CCCh---hHHHHHHHHHH----HHHHHHHHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRK-P----GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~-~----g~~r---~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ..|++|+.||.... +    ..+.   ...+..|+...    +.+++.|.+. ..+.+|+++.
T Consensus        82 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~g~ii~iss  143 (268)
T d2bgka1          82 KLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPA-KKGSIVFTAS  143 (268)
T ss_dssp             CCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGG-TCEEEEEECC
T ss_pred             CcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhc-CCCCcccccc
Confidence            78999999986432 1    1222   23455665544    4455555443 4566776654

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.86  E-value=7.7e-06  Score=60.73  Aligned_cols=34  Identities=26%  Similarity=0.383  Sum_probs=32.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      |||+|+|++|.+|++++..|+..|+  +|++++|++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            7999997779999999999999999  999999985

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=0.00019  Score=58.17  Aligned_cols=127  Identities=13%  Similarity=0.125  Sum_probs=73.0

Q ss_pred             cccccCC-CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCC---CCcceeEee-cC---
Q 028437           18 ARGYSSE-SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN---TRSEVAGYM-GN---   87 (209)
Q Consensus        18 ~~~~~~~-~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~---~~~~v~~~~-~~---   87 (209)
                      ||+|+.- +-+.+.++||||++.+|..++..|++.|.  +|++.|+++.  +....++....   ...++..+. +-   
T Consensus         1 ~~~y~~~g~L~gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~   78 (297)
T d1yxma1           1 GRSYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNE   78 (297)
T ss_dssp             CCCSBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCH
T ss_pred             CCCCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCH
Confidence            4666543 12335788999999999999999999999  9999999752  22333443211   111222211 11   


Q ss_pred             Cch-------hhhcCCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHH----HHHHhhCCCeEEEEecCC
Q 028437           88 DQL-------GQALEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        88 ~d~-------~~a~~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~----~~i~~~~p~~~viv~snP  147 (209)
                      ++.       .+.+...|++|+.||......   .+   ....+..|+.....+.    +.+.+. ..+.++++|..
T Consensus        79 ~~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~g~Ii~~ss~  154 (297)
T d1yxma1          79 EEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKE-HGGSIVNIIVP  154 (297)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH-HCEEEEEECCC
T ss_pred             HHHHHHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccc-ccccccccccc
Confidence            111       223457899999998754221   12   2334566766554444    444433 34556666543

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.85  E-value=9.4e-06  Score=61.51  Aligned_cols=73  Identities=16%  Similarity=0.213  Sum_probs=44.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-HHhhcCCCC-CcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      |+||+|+||||++|+-++..|.....+ +|..+-.+...++ ..++..... ...+.    ..+.++..+++|+|+.+.+
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~~aG~~i~~~~p~~~~~~~~~----~~~~~~~~~~~dvvf~a~p   75 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSILS----EFDPEKVSKNCDVLFTALP   75 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBCB----CCCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccccCCCcccccCchhhcccccc----ccCHhHhccccceEEEccc
Confidence            679999999999999999999887765 5555544332222 111111100 11111    1244555678999999864

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=1.6e-05  Score=62.39  Aligned_cols=116  Identities=14%  Similarity=0.200  Sum_probs=67.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHh-hcCCCCC-c-ceeEeecCCchhhhcC--CCCEEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAAD-VGHINTR-S-EVAGYMGNDQLGQALE--DSDVVII  102 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~d-l~~~~~~-~-~v~~~~~~~d~~~a~~--~aD~Vi~  102 (209)
                      .++|+|+||+|.+|..++..|+++|.  +|.++|+.+....... ....... . .....  .....+.+.  ..|++|+
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~iD~lIn   77 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEASASVIVKMTDSFTEQADQV--TAEVGKLLGDQKVDAILC   77 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSSEEEECCCCSCHHHHHHHH--HHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCccccccccceeecccCcHHHHHHH--HHHHHHHhCCCCceEEEE
Confidence            35899999999999999999999999  9999998642111000 0111100 0 00000  001122222  4799999


Q ss_pred             cCCCCC--CC-CCC----hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437          103 PAGVPR--KP-GMT----RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus       103 ~ag~~~--~~-g~~----r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                      .||...  .+ ...    ....+..|+.....+.+.+.++- +.+.++++|.-
T Consensus        78 nAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~  130 (236)
T d1dhra_          78 VAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAK  130 (236)
T ss_dssp             CCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             CCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccH
Confidence            998532  11 111    22345677776666666666553 45788887643

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.85  E-value=3.6e-05  Score=60.95  Aligned_cols=118  Identities=17%  Similarity=0.164  Sum_probs=70.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCC--CcceeEeec----CCchhhhcCCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT--RSEVAGYMG----NDQLGQALEDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~--~~~v~~~~~----~~d~~~a~~~aD~V  100 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  +....++.....  .+++.....    .....+.+...|++
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idil   84 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVL   84 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCeEE
Confidence            4688999999999999999999999  9999999752  222333332210  011110000    00122334578999


Q ss_pred             EEcCCCCCCC---CCC---hhHHHHHHHHHHHH----HHHHHHhhCCCeEEEEecCCCC
Q 028437          101 IIPAGVPRKP---GMT---RDDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus       101 i~~ag~~~~~---g~~---r~~~~~~N~~~~~~----i~~~i~~~~p~~~viv~snP~~  149 (209)
                      |+.||.....   ..+   ..+.+..|+.....    +.+.+.+. +.+.+|++|....
T Consensus        85 innAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~~~  142 (244)
T d1nffa_          85 VNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSIEG  142 (244)
T ss_dssp             EECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGG
T ss_pred             EECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc-CcceEEecccccc
Confidence            9999975422   122   23345666655444    44444443 4678888875543

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.85  E-value=1.4e-05  Score=60.73  Aligned_cols=78  Identities=19%  Similarity=0.221  Sum_probs=46.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-HHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      +.+++||+|+||||++|+-++..|.....+ ++..+..+...++ ..+.............  ....++.++++|+||.+
T Consensus         2 s~~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dvvf~a   78 (183)
T d2cvoa1           2 SGEEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRKAGEQFGSVFPHLITQDLPNL--VAVKDADFSNVDAVFCC   78 (183)
T ss_dssp             CSSCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTTTTSCHHHHCGGGTTSCCCCC--BCGGGCCGGGCSEEEEC
T ss_pred             CCCccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccccCCCccccccccccccccccc--hhhhhhhhcccceeeec
Confidence            456789999999999999999999987755 6666654432222 1111111100001000  11223556789999988


Q ss_pred             CC
Q 028437          104 AG  105 (209)
Q Consensus       104 ag  105 (209)
                      ..
T Consensus        79 lp   80 (183)
T d2cvoa1          79 LP   80 (183)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.84  E-value=0.00012  Score=58.40  Aligned_cols=115  Identities=14%  Similarity=0.201  Sum_probs=69.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEee----cCCch-------hhhc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM----GNDQL-------GQAL   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~----~~~d~-------~~a~   94 (209)
                      +.++||||++.+|..++..|++.|.  +|++.+++..   +....++.....  ++..+.    ..++.       .+.+
T Consensus         8 K~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVGG--EAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4788999999999999999999999  9999998642   222333333221  111110    01112       2234


Q ss_pred             CCCCEEEEcCCCCCCCC---CChh---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEecCC
Q 028437           95 EDSDVVIIPAGVPRKPG---MTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~r~---~~~~~N~~----~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ...|++|+.||......   .+.+   ..+..|+.    .++.+++.|.+......|+++|..
T Consensus        84 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~  146 (261)
T d1geea_          84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSV  146 (261)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCG
T ss_pred             CCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccc
Confidence            57899999999754221   2332   34556654    455666666665555566666543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.84  E-value=9.4e-06  Score=60.01  Aligned_cols=71  Identities=15%  Similarity=0.169  Sum_probs=47.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEee--cCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~--~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +||+|+|| |.+|.+++..|.+.|+  +|+++|++...  +.++.............  .....++.+...|.++.+.
T Consensus         3 K~IliiGa-G~~G~~~a~~L~~~g~--~V~v~dr~~~~--a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLES--AKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHHTTTC--EEEEEESCHHH--HHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECChHH--HHHHHhcccccccccccccchhhhHhhhhccceeEeec
Confidence            48999999 9999999999999999  99999998532  22333321110111100  0123456678889888764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=9.8e-05  Score=58.59  Aligned_cols=113  Identities=15%  Similarity=0.217  Sum_probs=68.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cCCc----------hhhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ----------LGQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~a~~   95 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  +....++.....  ++..+. +-++          ..+.+.
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~~~g   87 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISKLG   87 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5788999999999999999999999  9999999752  222333433221  111111 1111          123346


Q ss_pred             CCCEEEEcCCCCCCC--CCChh---HHHHHHHHH----HHHHHHHHHhhCCCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKP--GMTRD---DLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~--g~~r~---~~~~~N~~~----~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      ..|++|+.||.....  ..+.+   ..+..|+..    ++.+++.+.+. ..+.+|++|.
T Consensus        88 ~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~Ii~isS  146 (255)
T d1fmca_          88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKN-GGGVILTITS  146 (255)
T ss_dssp             SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccc-cccccccccc
Confidence            789999999875422  12332   345566554    44555555554 3556666653

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.83  E-value=4.3e-05  Score=60.71  Aligned_cols=114  Identities=20%  Similarity=0.251  Sum_probs=70.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCC--CcceeEeecCCch-------hhhcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT--RSEVAGYMGNDQL-------GQALEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~--~~~v~~~~~~~d~-------~~a~~~a   97 (209)
                      +.+.||||++.+|..++..|++.|.  +|++.|+++.  +....++.....  .+++..   .++.       .+.+...
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~---~~~v~~~~~~~~~~~g~i   80 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEIGPAACAIALDVTD---QASIDRCVAELLDRWGSI   80 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC---HHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCceEEEEeeCCC---HHHHHHHHHHHHHHhCCc
Confidence            4788999999999999999999998  9999999752  223334432210  111110   1112       2234578


Q ss_pred             CEEEEcCCCCCCCC---CC---hhHHHHHHHHHH----HHHHHHHHhhCCCeEEEEecCC
Q 028437           98 DVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        98 D~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~snP  147 (209)
                      |++|+.||......   .+   ....+..|+...    +.+++.+.+....+.||++|..
T Consensus        81 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~  140 (256)
T d1k2wa_          81 DILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQ  140 (256)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             cEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccch
Confidence            99999999754221   22   233466676544    4455555555556788888643

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2e-05  Score=62.44  Aligned_cols=114  Identities=18%  Similarity=0.196  Sum_probs=67.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCC-CCcceeEeec---CCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-TRSEVAGYMG---NDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~-~~~~v~~~~~---~~d~~~a~~~aD~Vi~~a  104 (209)
                      +.++|+||++.+|..++..|++.|.  +|++.|+++.  ...++.+.. ......+...   .+...+.+...|++|+++
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~~--~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~a   82 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGA--KVIATDINES--KLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVA   82 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHH--HHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHH--HHHHHHhccCCceeeeeccccccccccccccccceeEEecc
Confidence            4688999999999999999999999  9999999752  122222221 0000000000   012234456889999999


Q ss_pred             CCCCCCC---CChh---HHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCC
Q 028437          105 GVPRKPG---MTRD---DLFNINAGIVK----DLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       105 g~~~~~g---~~r~---~~~~~N~~~~~----~i~~~i~~~~p~~~viv~snP  147 (209)
                      |......   .+.+   ..+..|+....    .+.+.+.+ .+.+.+++++..
T Consensus        83 g~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~-~~~g~Ii~isS~  134 (245)
T d2ag5a1          83 GFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLA-QKSGNIINMSSV  134 (245)
T ss_dssp             CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEEEEECCS
T ss_pred             cccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCccccc-CCCceeeeeech
Confidence            9764321   2322   33455554444    44444444 356778888654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.81  E-value=0.00017  Score=57.29  Aligned_cols=114  Identities=13%  Similarity=0.094  Sum_probs=68.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-c---CCch-------hhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-G---NDQL-------GQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~---~~d~-------~~a~~   95 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  +....++.....  ....+. +   .++.       .+.+.
T Consensus         9 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~~   84 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKGF--KVEASVCDLSSRSERQELMNTVANHFH   84 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            4788999999999999999999999  9999999752  222333333221  111110 0   0111       12233


Q ss_pred             -CCCEEEEcCCCCCCCC---CCh---hHHHHHHHHHHHHHH----HHHHhhCCCeEEEEecCC
Q 028437           96 -DSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        96 -~aD~Vi~~ag~~~~~g---~~r---~~~~~~N~~~~~~i~----~~i~~~~p~~~viv~snP  147 (209)
                       ..|++|+.||......   .+.   ...+..|+.....+.    +.+.+ .+.+.+|+++..
T Consensus        85 ~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~G~Ii~isS~  146 (259)
T d2ae2a_          85 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKA-SERGNVVFISSV  146 (259)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TSSEEEEEECCG
T ss_pred             CCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhh-hccccccccccc
Confidence             4799999999754222   222   335667766554444    44443 456778777643

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=3.1e-05  Score=61.19  Aligned_cols=115  Identities=18%  Similarity=0.264  Sum_probs=68.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCC--CcceeEeec----CCchhhhcCCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT--RSEVAGYMG----NDQLGQALEDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~--~~~v~~~~~----~~d~~~a~~~aD~V  100 (209)
                      +.+.||||++.+|..++..|++.|.  +|++.|+++.  +....++.....  ..++.....    -+...+.+...|++
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   82 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDIL   82 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCccee
Confidence            3678899999999999999999999  9999999752  222233322110  011110000    01122334578999


Q ss_pred             EEcCCCCCCCC---CC---hhHHHHHHHHHH----HHHHHHHHhhCCCeEEEEecC
Q 028437          101 IIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       101 i~~ag~~~~~g---~~---r~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~sn  146 (209)
                      |+.||......   .+   ....+..|+...    +.+++.|.+. ..+.||++|.
T Consensus        83 VnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~II~isS  137 (243)
T d1q7ba_          83 VNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKK-RHGRIITIGS  137 (243)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             hhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHc-CCCEeeeecc
Confidence            99998754322   12   223456665544    4455555543 4678888864

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.79  E-value=0.00019  Score=57.34  Aligned_cols=114  Identities=17%  Similarity=0.209  Sum_probs=67.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCC-cceeEee-cCC---c-------hhhhc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTR-SEVAGYM-GND---Q-------LGQAL   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~-~~v~~~~-~~~---d-------~~~a~   94 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  +....++...... .++..+. +-+   +       ..+.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4788999999999999999999999  9999999752  2233444443211 1222211 111   1       12334


Q ss_pred             CCCCEEEEcCCCCCCCC-------CC---hhHHHHHHHHHH----HHHHHHHHhhCCCeEEEEec
Q 028437           95 EDSDVVIIPAGVPRKPG-------MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g-------~~---r~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~s  145 (209)
                      ...|++|+.||......       ++   ....+..|+...    +.+.+.+++. +..+|++.|
T Consensus        84 g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (272)
T d1xkqa_          84 GKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSS  147 (272)
T ss_dssp             SCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             CCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccc
Confidence            57899999998754211       11   223345666544    4455555443 445555544

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.79  E-value=0.00021  Score=56.64  Aligned_cols=117  Identities=18%  Similarity=0.167  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCC--CcceeEeec----CCchhhhcCCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT--RSEVAGYMG----NDQLGQALEDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~--~~~v~~~~~----~~d~~~a~~~aD~V  100 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  .....++.....  .+++.....    .+...+.+...|++
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   83 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL   83 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccEE
Confidence            4789999999999999999999999  9999999752  112223322110  011110000    00112334678999


Q ss_pred             EEcCCCCCCCC---CC---hhHHHHHHHHHHH----HHHHHHHhhCCCeEEEEecCCC
Q 028437          101 IIPAGVPRKPG---MT---RDDLFNINAGIVK----DLCSAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus       101 i~~ag~~~~~g---~~---r~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~snP~  148 (209)
                      |+.||......   .+   ....+..|+....    .+++.+++. ..+.||++|...
T Consensus        84 VnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~-~~G~II~isS~~  140 (254)
T d1hdca_          84 VNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA-GGGSIVNISSAA  140 (254)
T ss_dssp             EECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGG
T ss_pred             EecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhc-CCCeecccccch
Confidence            99998754221   22   2345666665444    444444443 467888887543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.77  E-value=0.00019  Score=57.33  Aligned_cols=114  Identities=16%  Similarity=0.233  Sum_probs=67.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCC-cceeEee-c---CCch-------hhhc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTR-SEVAGYM-G---NDQL-------GQAL   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~-~~v~~~~-~---~~d~-------~~a~   94 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  +....++.....+ ..+..+. +   .++.       .+.+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999999  9999999752  2223334332211 1222111 1   1112       2234


Q ss_pred             CCCCEEEEcCCCCCCCC-----CCh---hHHHHHHHHHHH----HHHHHHHhhCCCeEEEEec
Q 028437           95 EDSDVVIIPAGVPRKPG-----MTR---DDLFNINAGIVK----DLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g-----~~r---~~~~~~N~~~~~----~i~~~i~~~~p~~~viv~s  145 (209)
                      ...|++|+.||.....+     ++.   ...+..|+....    .+.+.|.+ .+.+.+++.|
T Consensus        83 G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~g~ii~~s  144 (274)
T d1xhla_          83 GKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIK-TKGEIVNVSS  144 (274)
T ss_dssp             SCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             CCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccc-cccccccchh
Confidence            57899999998643222     122   234555655444    45555544 4556666654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.76  E-value=0.00018  Score=57.05  Aligned_cols=113  Identities=14%  Similarity=0.231  Sum_probs=67.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCC---C---CCcceeEeecCCch-------hh
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHI---N---TRSEVAGYMGNDQL-------GQ   92 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~---~---~~~~v~~~~~~~d~-------~~   92 (209)
                      +.++||||++.+|..++..|+++|.  +|++.|+++.   +....++...   .   ..+++..   .++.       .+
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~---~~~v~~~~~~~~~   79 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK---GEAVRGLVDNAVR   79 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS---HHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCC---HHHHHHHHHHHHH
Confidence            4678999999999999999999999  9999998642   1112222111   0   0111111   1112       23


Q ss_pred             hcCCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCC
Q 028437           93 ALEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        93 a~~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      .+...|++|+.||......   .+   ....+..|+..    ++.+++.+++. ..+.+|+++..
T Consensus        80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Iv~isS~  143 (260)
T d1x1ta1          80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ-GFGRIINIASA  143 (260)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             HhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhc-CCceEeecccc
Confidence            3457899999999764221   22   23345666544    45555666554 45778877644

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.72  E-value=7.5e-05  Score=59.24  Aligned_cols=116  Identities=19%  Similarity=0.248  Sum_probs=69.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCC--CcceeEeec----CCchhhhcCCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT--RSEVAGYMG----NDQLGQALEDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~--~~~v~~~~~----~~d~~~a~~~aD~V  100 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  +....++.....  .+++.....    -+...+.+...|++
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDil   84 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeE
Confidence            4788999999999999999999999  9999999752  222334433211  111111000    01122335678999


Q ss_pred             EEcCCCCCCC---CCCh---hHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCC
Q 028437          101 IIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus       101 i~~ag~~~~~---g~~r---~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~snP~  148 (209)
                      |+.||.....   ..+.   ...+..|+..    ++.+++.|++  ..+.||++|...
T Consensus        85 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~--~~G~Iv~isS~~  140 (253)
T d1hxha_          85 VNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKE--TGGSIINMASVS  140 (253)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--TCEEEEEECCGG
T ss_pred             EecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCCceecccchh
Confidence            9999975421   1222   3345666544    4455555543  347888887543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.71  E-value=0.0002  Score=58.25  Aligned_cols=115  Identities=21%  Similarity=0.276  Sum_probs=68.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-------hh----HHHhhcCCCCCcceeEeecCCch------
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-------PG----VAADVGHINTRSEVAGYMGNDQL------   90 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-------~~----~~~dl~~~~~~~~v~~~~~~~d~------   90 (209)
                      .+.++||||++.+|..++..|++.|.  .|++.|++..       ..    ...++...... ........++.      
T Consensus         7 gKvalITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~v~~   83 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK-AVANYDSVEAGEKLVKT   83 (302)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCE-EEEECCCGGGHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccc-cccccchHHHHHHHHHH
Confidence            34788999999999999999999999  9999988531       11    11222222111 01111111121      


Q ss_pred             -hhhcCCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHH----HHHHHHHHhhCCCeEEEEecC
Q 028437           91 -GQALEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        91 -~~a~~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~sn  146 (209)
                       .+.+...|++|+.||......   .+   ....+..|+...    +.+++.|++. ..+.||++|.
T Consensus        84 ~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~IV~isS  149 (302)
T d1gz6a_          84 ALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ-NYGRIIMTAS  149 (302)
T ss_dssp             HHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             HHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhC-CCcEEEEeCC
Confidence             233557899999999764221   22   233456666544    4555556554 4578888874

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.69  E-value=0.00062  Score=54.46  Aligned_cols=77  Identities=13%  Similarity=0.135  Sum_probs=49.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cCCc----------hhhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ----------LGQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~a~~   95 (209)
                      +.++||||+|.+|.+++..|++.|.  +|++.|++..  .....++.... ......+. +..+          ..+.+.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhhcc
Confidence            4688999999999999999999999  9999999752  22222332211 00111110 0111          223346


Q ss_pred             CCCEEEEcCCCCC
Q 028437           96 DSDVVIIPAGVPR  108 (209)
Q Consensus        96 ~aD~Vi~~ag~~~  108 (209)
                      ..|++|+.+|...
T Consensus       103 ~iDilvnnAg~~~  115 (294)
T d1w6ua_         103 HPNIVINNAAGNF  115 (294)
T ss_dssp             SCSEEEECCCCCC
T ss_pred             ccchhhhhhhhcc
Confidence            7899999998754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.69  E-value=0.0003  Score=55.63  Aligned_cols=114  Identities=18%  Similarity=0.214  Sum_probs=67.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee-c---CC-------chhhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-G---ND-------QLGQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~-~---~~-------d~~~a~~   95 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++..  ....++.... ..++..+. +   .+       ...+.+.
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADLG   86 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4788999999999999999999999  99999997521  1222222110 00111111 0   11       1223345


Q ss_pred             CCCEEEEcCCCCCCCC---CCh---hHHHHHHHH----HHHHHHHHHHhhCCCeEEEEec
Q 028437           96 DSDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~r---~~~~~~N~~----~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ..|++|+.||......   .+.   ...+..|+.    .++.+++.+.+....+.+++.+
T Consensus        87 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~  146 (260)
T d1h5qa_          87 PISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTS  146 (260)
T ss_dssp             SEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             CCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEee
Confidence            7899999998754221   222   234556654    4455566666556666666544

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.69  E-value=0.00016  Score=56.82  Aligned_cols=115  Identities=17%  Similarity=0.178  Sum_probs=68.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCC-----ccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cCC----------chhh
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND----------QLGQ   92 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~-----~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~----------d~~~   92 (209)
                      |+||||++.+|..++..|++.|.     ...|+++++++.  +....++.....  ....+. +-+          ...+
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA--LTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC--EEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHH
Confidence            57999999999999999999886     113889999752  223334443321  111111 011          1233


Q ss_pred             hcCCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCCC
Q 028437           93 ALEDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus        93 a~~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~snP~  148 (209)
                      .+...|++|+.||......   .+   ....+..|+..    ++.+++.|++. ..+.+|++|.-.
T Consensus        82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~isS~~  146 (240)
T d2bd0a1          82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSVA  146 (240)
T ss_dssp             HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGG
T ss_pred             HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhc-CCCceEEEechh
Confidence            3557899999998764221   22   23345666554    45555666553 467788886543

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.00015  Score=57.73  Aligned_cols=121  Identities=15%  Similarity=0.188  Sum_probs=69.0

Q ss_pred             ccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cCC---------
Q 028437           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---------   88 (209)
Q Consensus        21 ~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---------   88 (209)
                      |-++|-+.++++||||++.+|.+++..|++.|.  +|++.++++.  +....++..... .....+. ..+         
T Consensus         7 f~~~~L~GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~   83 (269)
T d1xu9a_           7 FRPEMLQGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFV   83 (269)
T ss_dssp             CCGGGGTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHH
T ss_pred             CCccccCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhHHHHHHHH
Confidence            444444556899999999999999999999998  9999999752  112222221110 0111111 001         


Q ss_pred             -chhhhcCCCCEEEEcCCCCCCCC---CChh---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEecC
Q 028437           89 -QLGQALEDSDVVIIPAGVPRKPG---MTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        89 -d~~~a~~~aD~Vi~~ag~~~~~g---~~r~---~~~~~N~----~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                       ...+.....|++++.+|......   .+.+   ..+..|+    ..++.+.+.+++.  .+.+++++.
T Consensus        84 ~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~--~G~ii~isS  150 (269)
T d1xu9a_          84 AQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSS  150 (269)
T ss_dssp             HHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEE
T ss_pred             HHHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc--CCcceEecc
Confidence             11233457899999987653211   2222   2345554    3455555666543  456666653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.68  E-value=0.0002  Score=56.88  Aligned_cols=115  Identities=13%  Similarity=0.072  Sum_probs=65.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-c-C--Cch-------hhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-G-N--DQL-------GQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~-~--~d~-------~~a~~   95 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  +....++.....  .+..+. + +  ++.       .+.+.
T Consensus         9 K~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~~   84 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMFG   84 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999999  9999999752  222233332221  111111 0 1  111       22233


Q ss_pred             -CCCEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHH----HHHHHHhhCCCeEEEEecCCC
Q 028437           96 -DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus        96 -~aD~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~----i~~~i~~~~p~~~viv~snP~  148 (209)
                       ..|++|+.||.....   ..+   ....+..|+.....    +.+.|++. ..+.+|++|...
T Consensus        85 g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Iv~isS~~  147 (259)
T d1xq1a_          85 GKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS-GCGNIIFMSSIA  147 (259)
T ss_dssp             TCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCEEEEEC---
T ss_pred             CCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccc-cccccccccccc
Confidence             479999999875321   123   23345667665444    44444443 356777776433

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.67  E-value=0.00035  Score=55.22  Aligned_cols=115  Identities=19%  Similarity=0.192  Sum_probs=68.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCcceeEe--ecC----------CchhhhcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGY--MGN----------DQLGQALE   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~~v~~~--~~~----------~d~~~a~~   95 (209)
                      +.|+||||++.+|..++..|+++|.  ++++++++.. .....++........+..+  ..+          +...+.+.
T Consensus         6 K~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g   83 (254)
T d1sbya1           6 KNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999998  8877766432 1112222211111111111  001          11223356


Q ss_pred             CCCEEEEcCCCCCCCCCChhHHHHHHHH----HHHHHHHHHHhh--CCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPGMTRDDLFNINAG----IVKDLCSAIAKY--CPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g~~r~~~~~~N~~----~~~~i~~~i~~~--~p~~~viv~snP  147 (209)
                      ..|++|+.||...  ..+.+..+..|+.    .++.+++.|.+.  .+.+.+|+++.-
T Consensus        84 ~iDilvnnAG~~~--~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~  139 (254)
T d1sbya1          84 TVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSV  139 (254)
T ss_dssp             CCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCCEEEeCCCCCC--HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEech
Confidence            7899999999753  2345566777765    455556666543  245778877643

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.63  E-value=0.0004  Score=55.22  Aligned_cols=113  Identities=19%  Similarity=0.153  Sum_probs=70.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEee-cCC----------chhhhc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GND----------QLGQAL   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~----------d~~~a~   94 (209)
                      ++++|+||++.+|..++..|++.|.  +|++.|++..   +....++......  +..+. +..          ...+.+
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g~~--~~~~~~D~~~~~~v~~~~~~~~~~~   94 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNGSD--AACVKANVGVVEDIVRMFEEAVKIF   94 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTCC--EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhCCc--eeeEeCCCCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999999999  9999998642   1122223222211  11110 011          123445


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEec
Q 028437           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~s  145 (209)
                      ...|++|+.+|......   .+   ..+.+..|+.....+.+.+.++- ..+.+++++
T Consensus        95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence            67899999998754221   12   33456677777777777666654 345555554

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.62  E-value=0.00016  Score=55.26  Aligned_cols=95  Identities=22%  Similarity=0.303  Sum_probs=62.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      -..++|+|+|. |.||+.++..|..-|.  +|..+|+............       ..   ..++++.++.||+|++...
T Consensus        47 L~gktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~-------~~---~~~l~~ll~~sD~i~~~~p  113 (193)
T d1mx3a1          47 IRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALGL-------QR---VSTLQDLLFHSDCVTLHCG  113 (193)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHTC-------EE---CSSHHHHHHHCSEEEECCC
T ss_pred             eeCceEEEecc-ccccccceeeeecccc--ceeeccCcccccchhhhcc-------cc---ccchhhccccCCEEEEeec
Confidence            34469999999 9999999999998898  9999998643222211111       11   2367889999999999864


Q ss_pred             CCC-CCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          106 VPR-KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       106 ~~~-~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ... ..+       ..|.       +.+....+++++|+++-.
T Consensus       114 lt~~T~~-------li~~-------~~l~~mk~~a~lIN~sRG  142 (193)
T d1mx3a1         114 LNEHNHH-------LIND-------FTVKQMRQGAFLVNTARG  142 (193)
T ss_dssp             CCTTCTT-------SBSH-------HHHTTSCTTEEEEECSCT
T ss_pred             ccccchh-------hhhH-------HHHhccCCCCeEEecCCc
Confidence            322 111       1122       223333478899999743

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.61  E-value=0.00047  Score=54.56  Aligned_cols=117  Identities=13%  Similarity=0.072  Sum_probs=67.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeEee--cCCch-------hhhcC-C
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM--GNDQL-------GQALE-D   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~--~~~d~-------~~a~~-~   96 (209)
                      ++++||||++.+|..++..|+++|.  +|++.++++..  ....++.............  ..++.       .+.+. .
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g~   84 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK   84 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            4799999999999999999999999  99999997521  2222333322111110010  01111       22232 3


Q ss_pred             CCEEEEcCCCCCCCC---CCh---hHHHHHHHHHH----HHHHHHHHhhCCCeEEEEecCCC
Q 028437           97 SDVVIIPAGVPRKPG---MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g---~~r---~~~~~~N~~~~----~~i~~~i~~~~p~~~viv~snP~  148 (209)
                      .|+++++||......   .+.   ...+..|+...    +.+.+.+.+. +.+.+|++|...
T Consensus        85 idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-~~g~ii~isS~~  145 (258)
T d1ae1a_          85 LNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLSSIA  145 (258)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEECCGG
T ss_pred             cEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccc-cccccccccccc
Confidence            789999998754221   222   23455555444    4444555443 566777776443

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=97.61  E-value=0.00022  Score=56.12  Aligned_cols=113  Identities=19%  Similarity=0.233  Sum_probs=66.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEee-c---CCc-------hhhhcC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-G---NDQ-------LGQALE   95 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~-~---~~d-------~~~a~~   95 (209)
                      =|+||||++.+|..++..|++.|.  +|++.|.+..   +....++.....  ++..+. +   .++       ..+.+.
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYGG--QAITFGGDVSKEADVEAMMKTAIDAWG   78 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHTC--EEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            368899999999999999999999  9988776431   112222222111  111110 0   111       223345


Q ss_pred             CCCEEEEcCCCCCCCC---CC---hhHHHHHHHHH----HHHHHHHHHhhCCCeEEEEecCC
Q 028437           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ..|++|+.||......   .+   ....+..|+..    ++.+++.|.+. ..+.||++|.-
T Consensus        79 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~  139 (244)
T d1edoa_          79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASV  139 (244)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCT
T ss_pred             CCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc-CCcEEEEEcCh
Confidence            7899999998764321   22   23345566554    44555555543 56788888743

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.61  E-value=7.9e-05  Score=56.06  Aligned_cols=32  Identities=19%  Similarity=0.312  Sum_probs=26.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY   60 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~   60 (209)
                      |+||+|+||||++|+.|...|..+..+ +|.-+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~-ei~~l   32 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHM-TITAL   32 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCC-ceEee
Confidence            689999999999999999999988654 55443

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.59  E-value=0.00018  Score=48.81  Aligned_cols=78  Identities=18%  Similarity=0.344  Sum_probs=55.5

Q ss_pred             ccCCCCCCCeEEEEcCCCchH-HHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCE
Q 028437           21 YSSESVPDRKVAVLGAAGGIG-QPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDV   99 (209)
Q Consensus        21 ~~~~~~~~~kI~IiGasG~vG-~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~   99 (209)
                      ++++|.+.+||-++|. |.+| ++||..|.++|+  +|...|.... .....+.+...  .+.  .+ .+ .+.++++|.
T Consensus         1 ~~~~~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~--~VsGSD~~~~-~~~~~L~~~Gi--~v~--~g-~~-~~~i~~~d~   70 (96)
T d1p3da1           1 IIPEMRRVQQIHFIGI-GGAGMSGIAEILLNEGY--QISGSDIADG-VVTQRLAQAGA--KIY--IG-HA-EEHIEGASV   70 (96)
T ss_dssp             CCCCCTTCCEEEEETT-TSTTHHHHHHHHHHHTC--EEEEEESCCS-HHHHHHHHTTC--EEE--ES-CC-GGGGTTCSE
T ss_pred             CCccchhCCEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEeCCCC-hhhhHHHHCCC--eEE--EC-Cc-cccCCCCCE
Confidence            4788999999999999 7777 558999999999  9999998642 22334444332  121  11 12 355789999


Q ss_pred             EEEcCCCCC
Q 028437          100 VIIPAGVPR  108 (209)
Q Consensus       100 Vi~~ag~~~  108 (209)
                      ||.+.+.+.
T Consensus        71 vV~S~AI~~   79 (96)
T d1p3da1          71 VVVSSAIKD   79 (96)
T ss_dssp             EEECTTSCT
T ss_pred             EEECCCcCC
Confidence            999987763

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=0.00018  Score=54.39  Aligned_cols=99  Identities=25%  Similarity=0.303  Sum_probs=64.5

Q ss_pred             ccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEE
Q 028437           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (209)
Q Consensus        21 ~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~V  100 (209)
                      |.......+++.|+|. |.+|+.++..+..-|.  +|..+|+........+...       ..    .++++.+++||+|
T Consensus        37 ~~~~~l~~k~vgiiG~-G~IG~~va~~~~~fg~--~v~~~d~~~~~~~~~~~~~-------~~----~~l~ell~~sDiv  102 (184)
T d1ygya1          37 FSGTEIFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLGI-------EL----LSLDDLLARADFI  102 (184)
T ss_dssp             CCBCCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHTC-------EE----CCHHHHHHHCSEE
T ss_pred             cccccccceeeeeccc-cchhHHHHHHhhhccc--eEEeecCCCChhHHhhcCc-------ee----ccHHHHHhhCCEE
Confidence            3444445579999999 9999999999988888  9999998643322222111       11    2578899999999


Q ss_pred             EEcCCCCC-CCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          101 IIPAGVPR-KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       101 i~~ag~~~-~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      +++..... ..+       ..|.       +.+....|++++|+++--
T Consensus       103 ~~~~Plt~~T~~-------lin~-------~~l~~mk~~a~lIN~sRG  136 (184)
T d1ygya1         103 SVHLPKTPETAG-------LIDK-------EALAKTKPGVIIVNAARG  136 (184)
T ss_dssp             EECCCCSTTTTT-------CBCH-------HHHTTSCTTEEEEECSCT
T ss_pred             EEcCCCCchhhh-------hhhH-------HHHhhhCCCceEEEecch
Confidence            99864321 111       1122       223333478899999743

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00015  Score=57.85  Aligned_cols=116  Identities=18%  Similarity=0.143  Sum_probs=71.7

Q ss_pred             CeE-EEEcCCCchHHHHHHHHHhC-CCccEEEEEecCCch--hHHHhhcCCCCCcceeEeecC---------CchhhhcC
Q 028437           29 RKV-AVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN---------DQLGQALE   95 (209)
Q Consensus        29 ~kI-~IiGasG~vG~~la~~L~~~-g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~~~~~---------~d~~~a~~   95 (209)
                      ++| +||||++.+|..++..|++. |.  .|++.++++.+  ....++............+-+         +...+.+.
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            467 58899999999999999875 77  99999998532  223344332211111111000         11223345


Q ss_pred             CCCEEEEcCCCCCCCC---CCh---hHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecC
Q 028437           96 DSDVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~g---~~r---~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~sn  146 (209)
                      ..|++|+.||......   .+.   ...+..|+.....+.+.+...- +.+++|+++.
T Consensus        81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            7899999999753221   112   2346678877777777776553 4578888875

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.53  E-value=0.00097  Score=52.09  Aligned_cols=115  Identities=15%  Similarity=0.123  Sum_probs=71.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCC--CcceeEeecCCc-------hhhhcCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINT--RSEVAGYMGNDQ-------LGQALEDS   97 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~--~~~v~~~~~~~d-------~~~a~~~a   97 (209)
                      ++++|+||++.+|..++..|+++|.  +|++.+++...  ....++.....  .+++.   ..++       ..+.+...
T Consensus         6 K~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls---~~~~i~~~~~~i~~~~g~i   80 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALEAEAIAVVADVS---DPKAVEAVFAEALEEFGRL   80 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCCSSEEEEECCTT---SHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCceEEEEecCC---CHHHHHHHHHHHHHHhCCc
Confidence            4789999999999999999999999  99999997521  12223322110  01111   1111       23334678


Q ss_pred             CEEEEcCCCCCCC---CCC---hhHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCC
Q 028437           98 DVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPV  148 (209)
Q Consensus        98 D~Vi~~ag~~~~~---g~~---r~~~~~~N~~~~~~i~~~i~~~~p-~~~viv~snP~  148 (209)
                      |++|+.||.....   ..+   ..+.+..|+.....+.+....+.. ...+++.|...
T Consensus        81 DiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a  138 (241)
T d2a4ka1          81 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVA  138 (241)
T ss_dssp             CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCT
T ss_pred             cEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccc
Confidence            9999998865321   122   334567888888888877776653 34555555443

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.50  E-value=0.00035  Score=55.06  Aligned_cols=114  Identities=12%  Similarity=0.047  Sum_probs=67.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCc-------hhhhcCCCCEEE
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQ-------LGQALEDSDVVI  101 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d-------~~~a~~~aD~Vi  101 (209)
                      ..+||||++.+|..++..|++.|.  +|++.|++... .....+.......++..   .++       ..+.+...|++|
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~dv~~---~~~~~~~~~~~~~~~G~iDiLV   76 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYPQLKPMS---EQEPAELIEAVTSAYGQVDVLV   76 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCTTSEECC---CCSHHHHHHHHHHHHSCCCEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHhhhCcEEEeccCC---HHHHHHHHHHHHHHcCCCCEEE
Confidence            468999999999999999999999  99999986421 11111111111111111   122       233455789999


Q ss_pred             EcCCCCCCCC----CChhH---HHHHHH----HHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437          102 IPAGVPRKPG----MTRDD---LFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus       102 ~~ag~~~~~g----~~r~~---~~~~N~----~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      +.||.....+    .+.++   .+..|+    -.++.+++.|++.. .+.||++|.-..
T Consensus        77 nNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~isS~~~  134 (252)
T d1zmta1          77 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSATP  134 (252)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCSTT
T ss_pred             ECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeeccccccc
Confidence            9988643221    23332   344554    34556666666543 567777765433

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.47  E-value=7.7e-05  Score=55.25  Aligned_cols=71  Identities=30%  Similarity=0.407  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH--HHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~--~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ...+|+|+|+ |.+|..++..|...|. .++.++.|...++.  ...+..     ....   -+++.+++.++|+||.+.
T Consensus        23 ~~~~ilviGa-G~~g~~v~~~L~~~g~-~~i~v~nRt~~ka~~l~~~~~~-----~~~~---~~~~~~~l~~~Divi~at   92 (159)
T d1gpja2          23 HDKTVLVVGA-GEMGKTVAKSLVDRGV-RAVLVANRTYERAVELARDLGG-----EAVR---FDELVDHLARSDVVVSAT   92 (159)
T ss_dssp             TTCEEEEESC-CHHHHHHHHHHHHHCC-SEEEEECSSHHHHHHHHHHHTC-----EECC---GGGHHHHHHTCSEEEECC
T ss_pred             ccCeEEEECC-CHHHHHHHHHHHhcCC-cEEEEEcCcHHHHHHHHHhhhc-----cccc---chhHHHHhccCCEEEEec
Confidence            3459999999 9999999999998885 47999998643222  222221     1111   136788899999999997


Q ss_pred             CCC
Q 028437          105 GVP  107 (209)
Q Consensus       105 g~~  107 (209)
                      +.+
T Consensus        93 ss~   95 (159)
T d1gpja2          93 AAP   95 (159)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            755

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.45  E-value=0.00025  Score=53.57  Aligned_cols=104  Identities=17%  Similarity=0.188  Sum_probs=62.3

Q ss_pred             hhhhhhhhccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCc--
Q 028437            3 SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRS--   79 (209)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~--   79 (209)
                      .+|+..-..|.|+.++.-=.--..++-||+|+|| |-+|.+-+..++..|-  .|.++|.++. ..+..++.......  
T Consensus         4 ~av~~aa~~l~k~~~~l~~~~g~V~pa~VvViGa-GvaG~~Aa~~A~~lGA--~V~v~D~~~~~~~~l~~l~~~~i~~~~   80 (183)
T d1l7da1           4 RAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGV-GVAGLQAIATAKRLGA--VVMATDVRAATKEQVESLGGKFITVDD   80 (183)
T ss_dssp             HHHHHHHHHCSSCSSCEEETTEEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHHHTTCEECCC--
T ss_pred             HHHHHHHHHhhhhcCCcccccCCcCCcEEEEEcC-cHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhhcceEEEec
Confidence            3555555666665443221111345679999999 9999999999998888  9999999752 22232232211000  


Q ss_pred             ----cee-----------Eee--cCCchhhhcCCCCEEEEcCCCCCC
Q 028437           80 ----EVA-----------GYM--GNDQLGQALEDSDVVIIPAGVPRK  109 (209)
Q Consensus        80 ----~v~-----------~~~--~~~d~~~a~~~aD~Vi~~ag~~~~  109 (209)
                          ..+           .+.  ..+.+.+.+++||+||-++-.|.+
T Consensus        81 ~~~~~~~~~~gyA~~~s~~~~~~~~~~l~~~l~~aDlVI~talipG~  127 (183)
T d1l7da1          81 EAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGK  127 (183)
T ss_dssp             ---------------------CCHHHHHHHHHTTCSEEEECCCCTTS
T ss_pred             cccccccccccchhhcCHHHHHHHHHHHHHHHHhhhhheeeeecCCc
Confidence                000           000  011245668999999999877643

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.44  E-value=0.00062  Score=53.89  Aligned_cols=113  Identities=16%  Similarity=0.212  Sum_probs=63.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCC-cceeEee-c---CCch-------hhhcC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTR-SEVAGYM-G---NDQL-------GQALE   95 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~-~~v~~~~-~---~~d~-------~~a~~   95 (209)
                      .++||||++.+|..++..|++.|.  +|++.|+++.  +....++...... ..+..+. +   .++.       .+.+.
T Consensus         7 valVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   84 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFG   84 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            567889999999999999999999  9999999752  2233344332211 1222211 0   1111       22345


Q ss_pred             CCCEEEEcCCCCCCC-------CCCh---hHHHHHHHHH----HHHHHHHHHhhCCCeEEEEec
Q 028437           96 DSDVVIIPAGVPRKP-------GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        96 ~aD~Vi~~ag~~~~~-------g~~r---~~~~~~N~~~----~~~i~~~i~~~~p~~~viv~s  145 (209)
                      ..|++|+.||.....       ..+.   ...+..|+..    ++.+++.+++. ...+|++.|
T Consensus        85 ~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (264)
T d1spxa_          85 KLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISS  147 (264)
T ss_dssp             CCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             CCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc-cCcceeeee
Confidence            789999999864211       1122   2345556654    45555555543 344444444

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.44  E-value=0.00022  Score=54.57  Aligned_cols=65  Identities=28%  Similarity=0.411  Sum_probs=48.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      -...+|+|+|. |.||+.++..|..-|.  +|..+|+........   . ...        ..++++.+++||+|+++..
T Consensus        41 l~gk~vgIiG~-G~IG~~va~~l~~fg~--~V~~~d~~~~~~~~~---~-~~~--------~~~l~~~l~~sDii~~~~p  105 (197)
T d1j4aa1          41 VRDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPELEK---K-GYY--------VDSLDDLYKQADVISLHVP  105 (197)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHH---T-TCB--------CSCHHHHHHHCSEEEECSC
T ss_pred             ccCCeEEEecc-cccchhHHHhHhhhcc--cccccCccccccccc---c-eee--------eccccccccccccccccCC
Confidence            34469999999 9999999999998898  999999864321111   1 100        1357889999999999863

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00025  Score=51.49  Aligned_cols=103  Identities=10%  Similarity=0.042  Sum_probs=62.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch--hHHHhhcCCCCCcceeE-eecCCch-hhhcCCCCEEEEc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAG-YMGNDQL-GQALEDSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v~~-~~~~~d~-~~a~~~aD~Vi~~  103 (209)
                      +.+|.|+|. |.+|..++..|.+.|.  +++++|.++..  ....++...... .+.+ ....+.+ +.-+++||.||.+
T Consensus         3 knHiII~G~-g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~~~~~-vi~Gd~~d~~~L~~a~i~~a~~vi~~   78 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDNAD-VIPGDSNDSSVLKKAGIDRCRAILAL   78 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTTCE-EEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhcCCcE-EEEccCcchHHHHHhccccCCEEEEc
Confidence            357999999 9999999999999998  99999997632  222333322211 1111 0001112 2336789999998


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEec-CCCC
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPVN  149 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~s-nP~~  149 (209)
                      .+.         |  ..|+    .++..+++.+|+.+++.-. +|-.
T Consensus        79 ~~~---------d--~~n~----~~~~~~r~~~~~~~iia~~~~~~~  110 (153)
T d1id1a_          79 SDN---------D--ADNA----FVVLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             SSC---------H--HHHH----HHHHHHHHHTSSSCEEEECSSGGG
T ss_pred             ccc---------H--HHHH----HHHHHHHHhCCCCceEEEEcCHHH
Confidence            521         1  3454    3345566778887665554 4433

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00019  Score=48.07  Aligned_cols=71  Identities=17%  Similarity=0.225  Sum_probs=48.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      .||+|+|. |..|.+++..|.+.|.  +|.++|.+.......++.+..   .+..  ...+ ++.+.++|+||.+-|.+.
T Consensus         6 K~v~ViGl-G~sG~s~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~~~---~~~~--~~~~-~~~~~~~d~vi~SPGi~~   76 (93)
T d2jfga1           6 KNVVIIGL-GLTGLSCVDFFLARGV--TPRVMDTRMTPPGLDKLPEAV---ERHT--GSLN-DEWLMAADLIVASPGIAL   76 (93)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESSSSCTTGGGSCTTS---CEEE--SBCC-HHHHHHCSEEEECTTSCT
T ss_pred             CEEEEEeE-CHHHHHHHHHHHHCCC--EEEEeeCCcCchhHHHHhhcc---ceee--cccc-hhhhccCCEEEECCCCCC
Confidence            48999999 9999999999999998  999999864322222232211   1111  1112 455789999999977763

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.41  E-value=0.00038  Score=52.65  Aligned_cols=95  Identities=15%  Similarity=0.136  Sum_probs=61.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-HHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ..++|.|+|. |.+|..++..|..-|.  +|..+|+...... ..+....       .   ..++++.+++||+|++...
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~~~-------~---~~~l~~~l~~sD~v~~~~p  109 (188)
T d2naca1          43 EAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELNLT-------W---HATREDMYPVCDVVTLNCP  109 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHTCE-------E---CSSHHHHGGGCSEEEECSC
T ss_pred             cccceeeccc-cccchhhhhhhhccCc--eEEEEeecccccccccccccc-------c---cCCHHHHHHhccchhhccc
Confidence            3469999999 9999999999998888  9999998642211 1111111       1   2367899999999999864


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      .....   + .  .-|.       +.+....+++++|+++-.
T Consensus       110 lt~~T---~-~--li~~-------~~l~~mk~ga~lIN~aRG  138 (188)
T d2naca1         110 LHPET---E-H--MIND-------ETLKLFKRGAYIVNTARG  138 (188)
T ss_dssp             CCTTT---T-T--CBSH-------HHHTTSCTTEEEEECSCG
T ss_pred             ccccc---h-h--hhHH-------HHHHhCCCCCEEEecCch
Confidence            33211   1 0  1121       223333477899998743

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.41  E-value=0.00062  Score=51.25  Aligned_cols=61  Identities=21%  Similarity=0.286  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ..++|+|+|. |.+|..++..+..-|.  +|..+|+.+...        ..  .  .   ..++++.+++||+|+++..
T Consensus        41 ~gk~vgIiG~-G~IG~~va~~l~~~g~--~v~~~d~~~~~~--------~~--~--~---~~~l~ell~~sDiv~~~~p  101 (181)
T d1qp8a1          41 QGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPKEG--------PW--R--F---TNSLEEALREARAAVCALP  101 (181)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCCCS--------SS--C--C---BSCSHHHHTTCSEEEECCC
T ss_pred             cCceEEEecc-ccccccceeeeecccc--cccccccccccc--------ce--e--e---eechhhhhhccchhhcccc
Confidence            4468999999 9999999999999998  999999864211        10  0  0   1357899999999999853

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.38  E-value=0.00079  Score=53.66  Aligned_cols=113  Identities=20%  Similarity=0.222  Sum_probs=64.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCC--CcceeEeec----CCchhhhcCCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT--RSEVAGYMG----NDQLGQALEDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~--~~~v~~~~~----~~d~~~a~~~aD~V  100 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  .....++.....  ..++.....    .....+.+...|++
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idil   83 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDTL   83 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCcccc
Confidence            4789999999999999999999999  9999999752  112222322110  001100000    00122335688999


Q ss_pred             EEcCCCCCCCC-------CC----hhHHHHHHHH----HHHHHHHHHHhhCCCeEEEEec
Q 028437          101 IIPAGVPRKPG-------MT----RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus       101 i~~ag~~~~~g-------~~----r~~~~~~N~~----~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      |+.||......       ..    ....+..|+.    .++.+++.|++..  +.+|+++
T Consensus        84 vnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--g~iI~i~  141 (276)
T d1bdba_          84 IPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR--GNVIFTI  141 (276)
T ss_dssp             ECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC
T ss_pred             cccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC--CCceeee
Confidence            99998643211       11    2234555654    4455566665542  4444444

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.35  E-value=0.00048  Score=52.32  Aligned_cols=96  Identities=19%  Similarity=0.204  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .....+|+|+|. |.||+.++..+..-|.  ++..+|+.............      ..   ..++++.++.||+|++..
T Consensus        44 ~l~g~tvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~~------~~---~~~l~~ll~~sD~v~l~~  111 (191)
T d1gdha1          44 KLDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASYQA------TF---HDSLDSLLSVSQFFSLNA  111 (191)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHHTC------EE---CSSHHHHHHHCSEEEECC
T ss_pred             eecccceEEeec-ccchHHHHHHHHhhcc--ccccccccccccchhhcccc------cc---cCCHHHHHhhCCeEEecC
Confidence            334579999999 9999999999998888  99999986432221111111      00   236788999999999885


Q ss_pred             CCCC-CCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          105 GVPR-KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       105 g~~~-~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      .... ..++       .|.       +.+....+++++|+++-
T Consensus       112 plt~~T~~l-------i~~-------~~l~~mk~~a~lIN~sR  140 (191)
T d1gdha1         112 PSTPETRYF-------FNK-------ATIKSLPQGAIVVNTAR  140 (191)
T ss_dssp             CCCTTTTTC-------BSH-------HHHTTSCTTEEEEECSC
T ss_pred             CCCchHhhe-------ecH-------HHhhCcCCccEEEecCC
Confidence            4321 1111       121       22233346889999873

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.35  E-value=0.00013  Score=56.06  Aligned_cols=37  Identities=24%  Similarity=0.359  Sum_probs=33.8

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        24 ~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ||....||+|||| |..|.+.|..|.++|+  +|.++|++
T Consensus         2 ~~~~~~kVvVIGa-GiaGl~~A~~L~~~G~--~V~vier~   38 (268)
T d1c0pa1           2 MMHSQKRVVVLGS-GVIGLSSALILARKGY--SVHILARD   38 (268)
T ss_dssp             CCCCSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESS
T ss_pred             CCCCCCcEEEECc-cHHHHHHHHHHHHCCC--CEEEEeCC
Confidence            4566679999999 9999999999999999  99999985

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.30  E-value=0.00082  Score=52.52  Aligned_cols=35  Identities=17%  Similarity=0.162  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh---CCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKL---NPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~---~g~~~ev~l~D~~~   64 (209)
                      |++|+||||++.+|..++..|++   .|.  +|++.++++
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~--~V~~~~r~~   39 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNR   39 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCT
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCC--EEEEEECCH
Confidence            55799999999999999988864   677  999999975

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.30  E-value=0.00081  Score=52.97  Aligned_cols=112  Identities=16%  Similarity=0.169  Sum_probs=64.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCCCCcceeEee-cCC----------chhhhc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GND----------QLGQAL   94 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~----------d~~~a~   94 (209)
                      +.++|+||++.+|.+++..|++.|.  +|++.+++..   +....++......  +..+. +.+          ...+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g~~--~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLGAQ--GVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTCC--EEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcCCC--ceEecCCCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999999  9988665431   1222333332211  11110 011          122234


Q ss_pred             CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe
Q 028437           95 EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI  144 (209)
Q Consensus        95 ~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~  144 (209)
                      ...|++|+.||......   .+   ....+..|+...-.+.+.+.++- ....++++
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii  139 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT  139 (259)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence            57899999999753221   12   22345667665555555555443 23444444

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.30  E-value=0.00012  Score=53.87  Aligned_cols=69  Identities=22%  Similarity=0.445  Sum_probs=43.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                      ||+|+||||++|..|+..|..+++ ..++..+..+...++.  +....  ......   ...+..+.++|+++++++
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~--~~~~~--~~~~~~---~~~~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKS--LKFKD--QDITIE---ETTETAFEGVDIALFSAG   72 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCE--EEETT--EEEEEE---ECCTTTTTTCSEEEECSC
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccccc--ccccC--Cccccc---ccchhhhhhhhhhhhccC
Confidence            899999999999999998888764 4577777654322221  11111  011111   112456778899998864

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.27  E-value=0.00093  Score=52.65  Aligned_cols=78  Identities=13%  Similarity=0.090  Sum_probs=49.5

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCcceeEeecC---------CchhhhcCC
Q 028437           29 RKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGN---------DQLGQALED   96 (209)
Q Consensus        29 ~kI~IiGasG--~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~~v~~~~~~---------~d~~~a~~~   96 (209)
                      ++++|+||+|  .||.+++..|+++|.  +|++.|+++. .....++........+.....+         .+..+.+..
T Consensus         6 K~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~   83 (274)
T d2pd4a1           6 KKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS   83 (274)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcCC
Confidence            5899999987  599999999999999  9999999752 2223333322111111111001         122344567


Q ss_pred             CCEEEEcCCCCC
Q 028437           97 SDVVIIPAGVPR  108 (209)
Q Consensus        97 aD~Vi~~ag~~~  108 (209)
                      .|++|+++|...
T Consensus        84 id~lV~nag~~~   95 (274)
T d2pd4a1          84 LDFIVHSVAFAP   95 (274)
T ss_dssp             EEEEEECCCCCC
T ss_pred             CCeEEeeccccc
Confidence            899999988653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.27  E-value=0.0027  Score=43.52  Aligned_cols=68  Identities=16%  Similarity=0.176  Sum_probs=47.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .||+|+|+ |.+|..-+..|+..|-  +|++++.+...... .+.+..   .++.....-+ ++.+.++++|+.+.
T Consensus        13 k~vlVvG~-G~va~~ka~~ll~~ga--~v~v~~~~~~~~~~-~~~~~~---~i~~~~~~~~-~~dl~~~~lv~~at   80 (113)
T d1pjqa1          13 RDCLIVGG-GDVAERKARLLLEAGA--RLTVNALTFIPQFT-VWANEG---MLTLVEGPFD-ETLLDSCWLAIAAT   80 (113)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTB--EEEEEESSCCHHHH-HHHTTT---SCEEEESSCC-GGGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccCChHHH-HHHhcC---CceeeccCCC-HHHhCCCcEEeecC
Confidence            59999999 9999999999999998  99999986543322 222221   2222221222 46688999999874

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.0017  Score=50.62  Aligned_cols=117  Identities=17%  Similarity=0.150  Sum_probs=64.7

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCcceeEeecC---------CchhhhcCC
Q 028437           29 RKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGN---------DQLGQALED   96 (209)
Q Consensus        29 ~kI~IiGasG--~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~~v~~~~~~---------~d~~~a~~~   96 (209)
                      ++++||||+|  .+|.+++..|+++|.  +|++.++++. .....++..............+         .+..+....
T Consensus         6 K~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (258)
T d1qsga_           6 KRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK   83 (258)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred             CEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcccc
Confidence            5899999977  689999999999999  9999999742 2222222221110000000000         012233445


Q ss_pred             CCEEEEcCCCCCCCCC--------Ch---hHHHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437           97 SDVVIIPAGVPRKPGM--------TR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g~--------~r---~~~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                      .|++|+.++.......        ..   ......|......+.+.+..+- +...++++|..
T Consensus        84 ~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~  146 (258)
T d1qsga_          84 FDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYL  146 (258)
T ss_dssp             EEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECG
T ss_pred             cceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecch
Confidence            6899998876432211        11   1123445556666666666554 34456666643

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.24  E-value=0.00045  Score=54.30  Aligned_cols=117  Identities=13%  Similarity=0.142  Sum_probs=67.0

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCc-ceeE-eecCCc-------hhhhcCC
Q 028437           29 RKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRS-EVAG-YMGNDQ-------LGQALED   96 (209)
Q Consensus        29 ~kI~IiGasG--~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~-~v~~-~~~~~d-------~~~a~~~   96 (209)
                      ++++||||+|  .+|..++..|++.|.  +|++.++++. .....++....... .+.. +...++       ..+.+..
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcCC
Confidence            4789999987  599999999999999  9999998752 11121221111000 0000 000111       1233457


Q ss_pred             CCEEEEcCCCCCC---C----CCChhH---HHHHHHHHHHHHHHHHHhhC-CCeEEEEecCC
Q 028437           97 SDVVIIPAGVPRK---P----GMTRDD---LFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (209)
Q Consensus        97 aD~Vi~~ag~~~~---~----g~~r~~---~~~~N~~~~~~i~~~i~~~~-p~~~viv~snP  147 (209)
                      .|++|+.||....   .    ..+..+   .+..|+.....+++.+...- ..+.++++|..
T Consensus        87 iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~  148 (256)
T d1ulua_          87 LDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYY  148 (256)
T ss_dssp             EEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECG
T ss_pred             ceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeeh
Confidence            8999999986431   1    122222   45667766666666655432 34677777543

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=97.21  E-value=0.0012  Score=51.54  Aligned_cols=116  Identities=14%  Similarity=0.143  Sum_probs=68.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC-----chhHHHhhcCCCCCcceeEee-cCC---chhhh---
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGVAADVGHINTRSEVAGYM-GND---QLGQA---   93 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~-----~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a---   93 (209)
                      ++...|+||||+|.+|..++..|+++|. ..|+++.|+.     ......++....  .++..+. +.+   +.++.   
T Consensus         7 ~p~gt~lVTGgs~GIG~a~a~~la~~Ga-~~vvl~~R~~~~~~~~~~~~~~l~~~g--~~v~~~~~Dv~d~~~~~~~~~~   83 (259)
T d2fr1a1           7 KPTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELLGG   83 (259)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHT
T ss_pred             CCcCEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCccCHHHHHHHHHHHHhcc--ccccccccccchHHHHHHhhcc
Confidence            4445899999999999999999999996 3588887742     112223333222  1222211 111   11121   


Q ss_pred             c---CCCCEEEEcCCCCCCCC---CChh---HHHHHHHHHHHHHHHHHHhhCCCeEEEEec
Q 028437           94 L---EDSDVVIIPAGVPRKPG---MTRD---DLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (209)
Q Consensus        94 ~---~~aD~Vi~~ag~~~~~g---~~r~---~~~~~N~~~~~~i~~~i~~~~p~~~viv~s  145 (209)
                      +   ...|.||+++|......   .+..   ..+..|+.....+.+.+... +...++++|
T Consensus        84 i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~S  143 (259)
T d2fr1a1          84 IGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFS  143 (259)
T ss_dssp             SCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEE
T ss_pred             ccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEeeec
Confidence            1   14688999998764322   2222   23567888888887776653 445566665

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00053  Score=50.76  Aligned_cols=73  Identities=25%  Similarity=0.303  Sum_probs=43.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEE-EEEecCCchhHHHhhcCCCC--CcceeEeecCCchhhhcCCCCEEEEc
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRL-ALYDIANTPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev-~l~D~~~~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      ..+||+|.|++|.+|+.++..+.+.+-+ ++ ..+|+......-.|+.....  ...+..   +.++++.++.+|+||=.
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~-~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~---~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGV-QLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTE-ECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecccchhccchhhhhhccccCCcee---eccHHHHhcccceEEEe
Confidence            3579999999999999999988876432 33 44555321111112222111  111222   24567788899988765

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.20  E-value=0.002  Score=50.22  Aligned_cols=36  Identities=22%  Similarity=0.207  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +.|+||||++.+|..++..|++.|..-.|++.++++
T Consensus         4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~   39 (250)
T d1yo6a1           4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDV   39 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCH
Confidence            589999999999999999999998533788888875

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=97.19  E-value=0.00026  Score=54.19  Aligned_cols=95  Identities=25%  Similarity=0.279  Sum_probs=61.4

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        24 ~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      +.-..++|+|+|. |.||+.++..|..-|.  +|..+|+......     ..    ....    .++++.++.||+|++.
T Consensus        41 ~~l~~ktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~-----~~----~~~~----~~l~~l~~~~D~v~~~  104 (199)
T d1dxya1          41 KELGQQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKGD-----HP----DFDY----VSLEDLFKQSDVIDLH  104 (199)
T ss_dssp             CCGGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSC-----CT----TCEE----CCHHHHHHHCSEEEEC
T ss_pred             ccccceeeeeeec-ccccccccccccccce--eeeccCCccchhh-----hc----chhH----HHHHHHHHhcccceee
Confidence            3334469999999 9999999999998898  9999998542111     00    1111    2578889999999998


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      .....  . ++ .  ..|    ++..+.|   .+++++|+++-.
T Consensus       105 ~plt~--~-T~-~--li~----~~~l~~m---k~~a~lIN~aRG  135 (199)
T d1dxya1         105 VPGIE--Q-NT-H--IIN----EAAFNLM---KPGAIVINTARP  135 (199)
T ss_dssp             CCCCG--G-GT-T--SBC----HHHHHHS---CTTEEEEECSCT
T ss_pred             ecccc--c-cc-c--ccc----HHHhhcc---CCceEEEecccH
Confidence            53321  1 00 1  112    2222333   478899999743

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.18  E-value=0.0035  Score=46.31  Aligned_cols=138  Identities=16%  Similarity=0.158  Sum_probs=73.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +..+|+|+|+ |.++.+++..|.+.+-  +|++++|+..+.  ....+....   .+....  .+ ...+.++|+||++.
T Consensus        17 ~~k~vlIlGa-GGaarai~~aL~~~~~--~i~I~nR~~~~a~~l~~~~~~~~---~~~~~~--~~-~~~~~~~diiIN~t   87 (171)
T d1p77a1          17 PNQHVLILGA-GGATKGVLLPLLQAQQ--NIVLANRTFSKTKELAERFQPYG---NIQAVS--MD-SIPLQTYDLVINAT   87 (171)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGS---CEEEEE--GG-GCCCSCCSEEEECC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccCc--eeeeccchHHHHHHHHHHHhhcc---ccchhh--hc-cccccccceeeecc
Confidence            3458999999 9999999999988664  999999975322  233333221   222221  12 23467999999995


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE-EEehhhHHHHHH
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF-GVTTLDVVRAKT  183 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vi-g~~~lds~r~~~  183 (209)
                      ...-.+...     ....       +.+.. ..-..-++++||..+   .+-+.+++.+   ..+++ |+.++- .....
T Consensus        88 p~g~~~~~~-----~~~~-------~~~~~-~~~~~D~vy~~p~~T---~~l~~A~~~g---~~~v~~Gl~Ml~-~Qa~~  147 (171)
T d1p77a1          88 SAGLSGGTA-----SVDA-------EILKL-GSAFYDMQYAKGTDT---PFIALCKSLG---LTNVSDGFGMLV-AQAAH  147 (171)
T ss_dssp             CC------------CCCH-------HHHHH-CSCEEESCCCTTSCC---HHHHHHHHTT---CCCEECSHHHHH-HHHHH
T ss_pred             ccccccccc-----chhh-------hhhcc-cceeeeeeccCcccH---HHHHHHHHcC---CCcccCcHHHHH-HHHHH
Confidence            432111100     0000       11221 222333567888653   2223344432   33576 787652 23344


Q ss_pred             HHHHHcCCCC
Q 028437          184 FYAGKANVNV  193 (209)
Q Consensus       184 ~la~~l~v~~  193 (209)
                      ++--+.|+.|
T Consensus       148 ~f~iwtg~~~  157 (171)
T d1p77a1         148 SFHLWRGVMP  157 (171)
T ss_dssp             HHHHHHSCCC
T ss_pred             HHHHHHCCCC
Confidence            4445566654

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.0051  Score=47.56  Aligned_cols=117  Identities=15%  Similarity=0.127  Sum_probs=65.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCC--cceeEeec----CCchhhhcCCCCEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTR--SEVAGYMG----NDQLGQALEDSDVV  100 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~--~~v~~~~~----~~d~~~a~~~aD~V  100 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++.  +....++......  ..+.....    ...........|..
T Consensus         6 KvalITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDVA   83 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCCccccccccccccccccccccccccccccccc
Confidence            4567999999999999999999999  9999999752  2233344332110  00000000    00112334567888


Q ss_pred             EEcCCCCCCCC---------CC---hhHHHHHHHHHHHHHHHHHHhh---------CCCeEEEEecCC
Q 028437          101 IIPAGVPRKPG---------MT---RDDLFNINAGIVKDLCSAIAKY---------CPNAIVNMISNP  147 (209)
Q Consensus       101 i~~ag~~~~~g---------~~---r~~~~~~N~~~~~~i~~~i~~~---------~p~~~viv~snP  147 (209)
                      ++.++.....+         .+   ....+..|+.....+.+.+.++         ...+.+|++|..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~  151 (248)
T d2o23a1          84 VNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASV  151 (248)
T ss_dssp             EECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCT
T ss_pred             ccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecch
Confidence            88765432111         11   2234566766555555554332         234678888653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.0022  Score=46.92  Aligned_cols=99  Identities=17%  Similarity=0.315  Sum_probs=59.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ++..+|+|+|+ |.+|...++.+...|.  +++.+|.++.+ ..+.++....    +-............++.|++|.++
T Consensus        29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~lGad~----~i~~~~~~~~~~~~~~~D~vid~~  101 (168)
T d1uufa2          29 GPGKKVGVVGI-GGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKALGADE----VVNSRNADEMAAHLKSFDFILNTV  101 (168)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHTCSE----EEETTCHHHHHTTTTCEEEEEECC
T ss_pred             CCCCEEEEecc-chHHHHHHHHhhcccc--cchhhccchhHHHHHhccCCcE----EEECchhhHHHHhcCCCceeeeee
Confidence            34469999998 9999999988888897  77888886532 2233333221    111111112233456899999998


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      |.+.  .      +       .   ..++-..|.++++.++.|.+
T Consensus       102 g~~~--~------~-------~---~~~~~l~~~G~iv~~G~~~~  128 (168)
T d1uufa2         102 AAPH--N------L-------D---DFTTLLKRDGTMTLVGAPAT  128 (168)
T ss_dssp             SSCC--C------H-------H---HHHTTEEEEEEEEECCCC--
T ss_pred             ecch--h------H-------H---HHHHHHhcCCEEEEeccCCC
Confidence            7542  0      1       1   22233357888988887654

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00077  Score=50.86  Aligned_cols=91  Identities=23%  Similarity=0.332  Sum_probs=60.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ..++|+|+|. |.+|..++..+..-|.  +|..+|+......    .+      ...   ..++++.++.||+|++++..
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~----~~------~~~---~~~l~ell~~sDii~i~~pl  106 (188)
T d1sc6a1          43 RGKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENKLPL----GN------ATQ---VQHLSDLLNMSDVVSLHVPE  106 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCCC----TT------CEE---CSCHHHHHHHCSEEEECCCS
T ss_pred             cceEEEEeec-ccchhhhhhhcccccc--eEeeccccccchh----hh------hhh---hhhHHHHHhhccceeecccC
Confidence            4469999999 9999999999998898  9999998532100    00      011   23578899999999998654


Q ss_pred             CCC-CCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          107 PRK-PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       107 ~~~-~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ... .+       .-|    .   +.++...+++++|+++-.
T Consensus       107 t~~T~~-------li~----~---~~l~~mk~~a~lIN~aRG  134 (188)
T d1sc6a1         107 NPSTKN-------MMG----A---KEISLMKPGSLLINASRG  134 (188)
T ss_dssp             STTTTT-------CBC----H---HHHHHSCTTEEEEECSCS
T ss_pred             Ccchhh-------hcc----H---HHHhhCCCCCEEEEcCcH
Confidence            321 11       112    2   223333578899999743

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00078  Score=49.88  Aligned_cols=67  Identities=15%  Similarity=0.263  Sum_probs=50.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      -++++|+|- |.+|+.+|..+...|.  +|.++|+++..+....+.-..          ...+++++..+|+||.+.|..
T Consensus        24 Gk~v~V~Gy-G~iG~g~A~~~rg~G~--~V~v~e~dp~~al~A~~dG~~----------v~~~~~a~~~adivvtaTGn~   90 (163)
T d1li4a1          24 GKVAVVAGY-GDVGKGCAQALRGFGA--RVIITEIDPINALQAAMEGYE----------VTTMDEACQEGNIFVTTTGCI   90 (163)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTTCE----------ECCHHHHTTTCSEEEECSSCS
T ss_pred             CCEEEEecc-ccccHHHHHHHHhCCC--eeEeeecccchhHHhhcCceE----------eeehhhhhhhccEEEecCCCc
Confidence            358999999 9999999999999998  999999987433322221111          124689999999999987643

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.98  E-value=0.0051  Score=44.75  Aligned_cols=99  Identities=16%  Similarity=0.104  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCchh---hhc-----CCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLG---QAL-----EDS   97 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~---~a~-----~~a   97 (209)
                      +..+|+|+|+ |.+|...++.+...|.  +|+.+|+++.+ ..+.++....   .+.......+..   +.+     .++
T Consensus        26 ~g~~vlV~G~-G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~~a~~~ga~~---~~~~~~~~~~~~~~~~~~~~~~g~g~   99 (170)
T d1e3ja2          26 LGTTVLVIGA-GPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKNCGADV---TLVVDPAKEEESSIIERIRSAIGDLP   99 (170)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTCSE---EEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred             CCCEEEEEcc-cccchhhHhhHhhhcc--cccccchHHHHHHHHHHcCCcE---EEeccccccccchhhhhhhcccccCC
Confidence            3458999997 9999999998988997  99999997532 2223333211   110000011111   111     468


Q ss_pred             CEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus        98 D~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      |+||.++|.+               ....   ..++-..|.+++++++.|..
T Consensus       100 D~vid~~g~~---------------~~~~---~a~~~~~~~G~iv~~G~~~~  133 (170)
T d1e3ja2         100 NVTIDCSGNE---------------KCIT---IGINITRTGGTLMLVGMGSQ  133 (170)
T ss_dssp             SEEEECSCCH---------------HHHH---HHHHHSCTTCEEEECSCCSS
T ss_pred             ceeeecCCCh---------------HHHH---HHHHHHhcCCceEEEecCCC
Confidence            9999998643               1111   22233357889999987754

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.97  E-value=0.0017  Score=47.12  Aligned_cols=61  Identities=16%  Similarity=0.144  Sum_probs=39.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ||++||. |.+|..++..|++.|+  .++ +++.+.+.  .++......  .     ... .+.+.++|++|.+.
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~--~~~-~~~~~~~~--~~~~~~~~~--~-----~~~-~~~~~~~~~~i~~~   62 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFP--TLV-WNRTFEKA--LRHQEEFGS--E-----AVP-LERVAEARVIFTCL   62 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSC--EEE-ECSSTHHH--HHHHHHHCC--E-----ECC-GGGGGGCSEEEECC
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCC--EEE-EeCCHHHH--HHHHHHcCC--c-----ccc-cccccceeEEEecc
Confidence            8999999 9999999999999887  654 55543222  111111100  0     112 35567899998874

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00083  Score=50.45  Aligned_cols=48  Identities=23%  Similarity=0.369  Sum_probs=38.4

Q ss_pred             ccccccc---ccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           14 KPAGARG---YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        14 ~~~~~~~---~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .|+.+|.   .......+.||+|||| |..|...|..|.++|+  +|++++.++
T Consensus        26 Np~~g~e~~~~~~~~~~~k~V~IIGa-GPAGL~AA~~la~~G~--~Vtl~E~~~   76 (179)
T d1ps9a3          26 NPRACHETKMPILPAVQKKNLAVVGA-GPAGLAFAINAAARGH--QVTLFDAHS   76 (179)
T ss_dssp             CTTTTCTTTSCCCSCSSCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CccccCccccccCCCCCCcEEEEECc-cHHHHHHHHHHHhhcc--ceEEEeccC
Confidence            3555543   2334555679999999 9999999999999999  999999964

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.93  E-value=0.0012  Score=48.77  Aligned_cols=70  Identities=21%  Similarity=0.251  Sum_probs=52.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |..-++++|+|- |.+|+.+|..+...|-  .|.++++||..+....+...    .+      .+++++++.+|++|-+.
T Consensus        20 ~laGk~vvV~GY-G~vGrG~A~~~rg~Ga--~V~V~E~DPi~alqA~mdGf----~v------~~~~~a~~~aDi~vTaT   86 (163)
T d1v8ba1          20 LISGKIVVICGY-GDVGKGCASSMKGLGA--RVYITEIDPICAIQAVMEGF----NV------VTLDEIVDKGDFFITCT   86 (163)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHHHTTTC----EE------CCHHHHTTTCSEEEECC
T ss_pred             eecCCEEEEecc-cccchhHHHHHHhCCC--EEEEEecCchhhHHHHhcCC----cc------CchhHccccCcEEEEcC
Confidence            334459999999 9999999999999998  99999999854332212111    11      25789999999999997


Q ss_pred             CCC
Q 028437          105 GVP  107 (209)
Q Consensus       105 g~~  107 (209)
                      |..
T Consensus        87 Gn~   89 (163)
T d1v8ba1          87 GNV   89 (163)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            754

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.90  E-value=0.0037  Score=48.37  Aligned_cols=72  Identities=21%  Similarity=0.305  Sum_probs=44.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      -|+||||++.+|..++..|++.|.  +|++.|+++.+. ..|+.........  .  .+...+.....|.+++.||...
T Consensus         3 VvlITGas~GIG~aiA~~la~~Ga--~V~~~~~~~~~~-~~d~~~~~~~~~~--~--~~~~~~~~~~id~lv~~Ag~~~   74 (257)
T d1fjha_           3 IIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEV-IADLSTAEGRKQA--I--ADVLAKCSKGMDGLVLCAGLGP   74 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSE-ECCTTSHHHHHHH--H--HHHHTTCTTCCSEEEECCCCCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECChHHH-HHHhcCHHHHHHH--H--HHHHHHhCCCCcEEEEcCCCCC
Confidence            458899999999999999999999  999999864211 1112111100000  0  0011223346899999998654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.84  E-value=0.00047  Score=54.30  Aligned_cols=40  Identities=15%  Similarity=0.269  Sum_probs=35.0

Q ss_pred             cCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        22 ~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ++...++.||+|||| |..|...|..|.+.|+  +|.+++..+
T Consensus        24 ~~~~~~pkkV~IIGa-G~aGLsaA~~L~~~G~--~V~vlE~~~   63 (370)
T d2iida1          24 LKATSNPKHVVIVGA-GMAGLSAAYVLAGAGH--QVTVLEASE   63 (370)
T ss_dssp             SCCCSSCCEEEEECC-BHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCCCCCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            445567779999999 9999999999999999  999999753

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.81  E-value=0.00017  Score=52.22  Aligned_cols=62  Identities=13%  Similarity=0.084  Sum_probs=35.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      |.+||+ |.+|++++..|.+.++  .+.+++|++.+  ..++.+.... .      ..+.+++++++|+||++.
T Consensus         2 IgfIG~-G~mg~~l~~~L~~~~~--~~~v~~R~~~~--~~~l~~~~~~-~------~~~~~~~~~~~DiVil~v   63 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKDRYE--IGYILSRSIDR--ARNLAEVYGG-K------AATLEKHPELNGVVFVIV   63 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSHHH--HHHHHHHTCC-C------CCSSCCCCC---CEEECS
T ss_pred             EEEEeC-cHHHHHHHHHHHhCCC--EEEEEeCChhh--hcchhhcccc-c------ccchhhhhccCcEEEEec
Confidence            679999 9999999987765444  33578886432  2223322110 0      123467899999999996

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.78  E-value=0.008  Score=46.87  Aligned_cols=115  Identities=17%  Similarity=0.133  Sum_probs=64.4

Q ss_pred             eE-EEEcCCCchHHHHHHHHHh---CCCccEEEEEecCCc--hhHHHhhcCCCCCcceeEee-cCCc---hhhhc-----
Q 028437           30 KV-AVLGAAGGIGQPLALLMKL---NPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-----   94 (209)
Q Consensus        30 kI-~IiGasG~vG~~la~~L~~---~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-----   94 (209)
                      || +||||++.+|..++..|++   +|.  .|++.++++.  +....++.......++..+. +-++   .++.+     
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            55 5669999999999999986   677  9999999752  22233343221111222221 1111   11111     


Q ss_pred             ------CCCCEEEEcCCCCCC--CC----CC---hhHHHHHHHHHHHHHHHHHHhhC-----CCeEEEEecC
Q 028437           95 ------EDSDVVIIPAGVPRK--PG----MT---RDDLFNINAGIVKDLCSAIAKYC-----PNAIVNMISN  146 (209)
Q Consensus        95 ------~~aD~Vi~~ag~~~~--~g----~~---r~~~~~~N~~~~~~i~~~i~~~~-----p~~~viv~sn  146 (209)
                            .+.|++|+.||....  .+    .+   ....+..|+.....+.+.+.++-     +.+.++++|.
T Consensus        85 ~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS  156 (259)
T d1oaaa_          85 LPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISS  156 (259)
T ss_dssp             SCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECC
T ss_pred             hhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccc
Confidence                  134678888876421  11    22   23356778777666666665542     2356777753

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.78  E-value=0.004  Score=41.21  Aligned_cols=70  Identities=24%  Similarity=0.302  Sum_probs=49.9

Q ss_pred             CeEEEEcCCCchHH-HHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           29 RKVAVLGAAGGIGQ-PLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        29 ~kI~IiGasG~vG~-~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      |||-++|- |-+|. .||..|.+.|+  +|...|+.+. .....|......  +  +. ..+ .+-++++|+||.+.+.+
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~--~VsGSD~~~~-~~t~~L~~~Gi~--i--~~-gh~-~~~i~~~d~vV~SsAI~   71 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGN--DVYGSNIEET-ERTAYLRKLGIP--I--FV-PHS-ADNWYDPDLVIKTPAVR   71 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTC--EEEEECSSCC-HHHHHHHHTTCC--E--ES-SCC-TTSCCCCSEEEECTTCC
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCC--eEEEEeCCCC-hhHHHHHHCCCe--E--Ee-eec-ccccCCCCEEEEecCcC
Confidence            79999999 77877 58999999999  9999998752 233345555422  1  11 123 35578999999998776


Q ss_pred             C
Q 028437          108 R  108 (209)
Q Consensus       108 ~  108 (209)
                      .
T Consensus        72 ~   72 (89)
T d1j6ua1          72 D   72 (89)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.77  E-value=0.0011  Score=49.06  Aligned_cols=66  Identities=20%  Similarity=0.380  Sum_probs=42.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~  106 (209)
                      ++||+|+|. |.+|+..+..+.+..-+.-+.++|+++...     ..    .....   ..+.++...+.|+|+++...
T Consensus         3 kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~~-----~~----~~~~~---~~~~~~~~~~~D~Vvi~tp~   68 (170)
T d1f06a1           3 NIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATLD-----TK----TPVFD---VADVDKHADDVDVLFLCMGS   68 (170)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCCS-----SS----SCEEE---GGGGGGTTTTCSEEEECSCT
T ss_pred             cceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEecccccc-----cc----ccccc---chhhhhhccccceEEEeCCC
Confidence            479999998 999999988888765443334555543210     11    11111   23556677899999998643

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=96.77  E-value=0.0017  Score=50.71  Aligned_cols=35  Identities=17%  Similarity=0.208  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCc--hHHHHHHHHHhCCCccEEEEEecCCc
Q 028437           29 RKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIANT   65 (209)
Q Consensus        29 ~kI~IiGasG~--vG~~la~~L~~~g~~~ev~l~D~~~~   65 (209)
                      ++++|+||+|.  +|.+++..|++.|.  +|++.+++..
T Consensus         7 K~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~~   43 (268)
T d2h7ma1           7 KRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRL   43 (268)
T ss_dssp             CEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSCH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCChH
Confidence            58999997664  99999999999998  9999998753

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.75  E-value=0.0041  Score=43.92  Aligned_cols=29  Identities=24%  Similarity=0.406  Sum_probs=25.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLAL   59 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l   59 (209)
                      |||+|.|++|.+|+.++..+...++  ++..
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~--~l~~   29 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH--ELVL   29 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC--eEEE
Confidence            6999999999999999988888887  6553

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.69  E-value=0.0011  Score=51.14  Aligned_cols=34  Identities=21%  Similarity=0.404  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ..+||+|||| |..|..+|..|.+.|+  +|+++|+.
T Consensus         3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~--~v~v~Er~   36 (265)
T d2voua1           3 TTDRIAVVGG-SISGLTAALMLRDAGV--DVDVYERS   36 (265)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSS
T ss_pred             CCCcEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCC
Confidence            3469999999 9999999999999999  99999985

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.66  E-value=0.00072  Score=52.04  Aligned_cols=32  Identities=25%  Similarity=0.299  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      |||+|||| |..|...|..|.+.|+  +|++++..
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~--~V~vlE~~   32 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT--DAVLLESS   32 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC--CEEEECSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecC
Confidence            69999999 9999999999999999  99999985

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.66  E-value=0.0011  Score=53.61  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      |.+++||+|||| |..|...|..|++.+...+|+++++..
T Consensus         1 m~~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           1 LPTIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CCSCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCCCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            567789999999 999999999998877555999999863

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.62  E-value=0.00062  Score=50.12  Aligned_cols=38  Identities=24%  Similarity=0.449  Sum_probs=25.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHH-HHHhCCCccEEEEE-ecCC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLAL-LMKLNPLVSRLALY-DIAN   64 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~-~L~~~g~~~ev~l~-D~~~   64 (209)
                      |.+++||+|+|+ |.+|..+.. .|...+.+ |++++ ++++
T Consensus         1 M~kkirvaIIGa-G~ig~~~~~~~l~~~~~~-el~avas~~~   40 (157)
T d1nvmb1           1 MNQKLKVAIIGS-GNIGTDLMIKVLRNAKYL-EMGAMVGIDA   40 (157)
T ss_dssp             CCSCEEEEEECC-SHHHHHHHHHHHHHCSSE-EEEEEECSCT
T ss_pred             CCCCcEEEEEcC-cHHHHHHHHHHHhhCCcc-eEEEEEecch
Confidence            556789999996 999997554 44444443 66665 6654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.54  E-value=0.0019  Score=44.57  Aligned_cols=40  Identities=18%  Similarity=0.186  Sum_probs=34.1

Q ss_pred             cCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        22 ~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +.....|.+|+|+|| |++|.-+|..|.+.|.  +|+++++.+
T Consensus        16 l~~~~~p~~v~IiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   55 (117)
T d1ebda2          16 LNLGEVPKSLVVIGG-GYIGIELGTAYANFGT--KVTILEGAG   55 (117)
T ss_dssp             HTCSSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             hChhhcCCeEEEECC-Cccceeeeeeeccccc--EEEEEEecc
Confidence            344455679999999 9999999999999998  999999853

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.0017  Score=45.41  Aligned_cols=39  Identities=13%  Similarity=0.242  Sum_probs=33.6

Q ss_pred             CCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        23 ~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .....|.|++|+|| |++|.-+|..|...|.  +|+++++.+
T Consensus        18 ~l~~~p~~~vIiG~-G~ig~E~A~~l~~lG~--~Vtii~~~~   56 (122)
T d1v59a2          18 SLKEIPKRLTIIGG-GIIGLEMGSVYSRLGS--KVTVVEFQP   56 (122)
T ss_dssp             TCSSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CcccCCCeEEEECC-CchHHHHHHHHHhhCc--ceeEEEecc
Confidence            33445679999999 9999999999999999  999999853

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.022  Score=41.38  Aligned_cols=98  Identities=19%  Similarity=0.181  Sum_probs=58.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCchhhhc--------CCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQAL--------EDS   97 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~--------~~a   97 (209)
                      +..+|+|+|+ |.+|...+..+...|. .+|+++|+++.+ ..+.++....    +... ..++..+..        .++
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~Ga~~----~~~~-~~~~~~~~~~~~~~~~g~g~   98 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEIGADL----VLQI-SKESPQEIARKVEGQLGCKP   98 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTTCSE----EEEC-SSCCHHHHHHHHHHHHTSCC
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHhCCcc----cccc-cccccccccccccccCCCCc
Confidence            3458999998 9999999988888885 479999997532 1222332211    1111 112222221        378


Q ss_pred             CEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus        98 D~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      |+||.++|.+               .......+.   ..|.+++++++.|..
T Consensus        99 Dvvid~~G~~---------------~~~~~a~~~---~~~gG~iv~~G~~~~  132 (171)
T d1pl8a2          99 EVTIECTGAE---------------ASIQAGIYA---TRSGGTLVLVGLGSE  132 (171)
T ss_dssp             SEEEECSCCH---------------HHHHHHHHH---SCTTCEEEECSCCCS
T ss_pred             eEEEeccCCc---------------hhHHHHHHH---hcCCCEEEEEecCCC
Confidence            9999997643               111222222   247788888887754

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.53  E-value=0.0037  Score=48.51  Aligned_cols=32  Identities=19%  Similarity=0.319  Sum_probs=29.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .+||||++.+|..++..|++.|.  +|++.|++.
T Consensus         4 AlVTGas~GIG~aia~~la~~G~--~Vvi~~r~~   35 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGF--RVVVHYRHS   35 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            47999999999999999999999  999999974

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.50  E-value=0.0028  Score=46.11  Aligned_cols=99  Identities=19%  Similarity=0.261  Sum_probs=58.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCchh----hhcCCCCEE
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLG----QALEDSDVV  100 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~----~a~~~aD~V  100 (209)
                      ++..+|+|+|+ |.+|...+..+...|.  +|+.+|+++.+ ..+.++....   .+ .. ..++..    +...+.|.+
T Consensus        26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G~--~Vi~~~~~~~~~~~a~~~Ga~~---~i-~~-~~~~~~~~~~~~~~g~~~~   97 (166)
T d1llua2          26 RPGQWVAISGI-GGLGHVAVQYARAMGL--HVAAIDIDDAKLELARKLGASL---TV-NA-RQEDPVEAIQRDIGGAHGV   97 (166)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTCSE---EE-ET-TTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEeec-cccHHHHHHHHHHcCC--ccceecchhhHHHhhhccCccc---cc-cc-cchhHHHHHHHhhcCCccc
Confidence            34468999998 9999999998888897  99999997532 2233332211   11 11 112222    233466777


Q ss_pred             EEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 028437          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (209)
Q Consensus       101 i~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~  150 (209)
                      |.+++.+               +   .+-..++-..|.+++++++.|.+.
T Consensus        98 i~~~~~~---------------~---~~~~~~~~l~~~G~iv~~G~~~~~  129 (166)
T d1llua2          98 LVTAVSN---------------S---AFGQAIGMARRGGTIALVGLPPGD  129 (166)
T ss_dssp             EECCSCH---------------H---HHHHHHTTEEEEEEEEECCCCSSE
T ss_pred             ccccccc---------------h---HHHHHHHHhcCCcEEEEEEecCCC
Confidence            7765432               1   111233333478899998876543

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.013  Score=46.53  Aligned_cols=112  Identities=15%  Similarity=0.191  Sum_probs=60.9

Q ss_pred             eEE-EEcCCCchHHHHHHHHHhCCCccEEEEEec---CCc-hhH----HHhhcCCCCCcceeEee-cCCc---hhhhc--
Q 028437           30 KVA-VLGAAGGIGQPLALLMKLNPLVSRLALYDI---ANT-PGV----AADVGHINTRSEVAGYM-GNDQ---LGQAL--   94 (209)
Q Consensus        30 kI~-IiGasG~vG~~la~~L~~~g~~~ev~l~D~---~~~-~~~----~~dl~~~~~~~~v~~~~-~~~d---~~~a~--   94 (209)
                      ||+ ||||++.+|.+++..|++.|.  ++++++.   +.. ...    ..++....  ..+..+. +-+|   .++++  
T Consensus         3 kVvlITGassGIG~a~A~~la~~Ga--~v~~v~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~   78 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPP--GSLETLQLDVRDSKSVAAARER   78 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCT--TSEEEEECCTTCHHHHHHHHHT
T ss_pred             CEEEEccCCCHHHHHHHHHHHHCCC--CeEEEEEecCChhhhHHHHHHHHHHhccC--CceEEEeccccchHhhhhhhhh
Confidence            665 679999999999999999997  5555443   321 111    12222221  1222111 1111   11111  


Q ss_pred             ---CCCCEEEEcCCCCCCCC---CC---hhHHHHHHHH----HHHHHHHHHHhhCCCeEEEEecC
Q 028437           95 ---EDSDVVIIPAGVPRKPG---MT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus        95 ---~~aD~Vi~~ag~~~~~g---~~---r~~~~~~N~~----~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                         ...|++++.+|......   .+   ....+..|+.    .++.+++.|++. ..+.+|++|.
T Consensus        79 ~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~-~~G~Iv~isS  142 (285)
T d1jtva_          79 VTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRR-GSGRVLVTGS  142 (285)
T ss_dssp             CTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEE
T ss_pred             ccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHc-CCCceEEEec
Confidence               35799999998754322   12   2234556655    455566666654 3566777753

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.46  E-value=0.0029  Score=46.59  Aligned_cols=97  Identities=20%  Similarity=0.230  Sum_probs=56.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ++..+|+|.||+|.+|...++.+...|.  +|+..+.++.+ ....++..   + .+..+....+....-+++|+|+.++
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~~~~lGa---~-~~i~~~~~~~~~~~~~g~D~v~d~~   99 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEKLALPLALGA---E-EAATYAEVPERAKAWGGLDLVLEVR   99 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGGSHHHHHTTC---S-EEEEGGGHHHHHHHTTSEEEEEECS
T ss_pred             CCCCEEEEEeccccchhhhhhhhccccc--cccccccccccccccccccc---c-eeeehhhhhhhhhcccccccccccc
Confidence            3456899999999999999999999998  88888875422 22222222   1 1111110001123346899999986


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~  148 (209)
                      |..          +.          ..++-..|.++++.++++.
T Consensus       100 G~~----------~~----------~~~~~l~~~G~~v~~G~~~  123 (171)
T d1iz0a2         100 GKE----------VE----------ESLGLLAHGGRLVYIGAAE  123 (171)
T ss_dssp             CTT----------HH----------HHHTTEEEEEEEEEC----
T ss_pred             chh----------HH----------HHHHHHhcCCcEEEEeCCC
Confidence            511          11          1233335788898887654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.46  E-value=0.00074  Score=47.31  Aligned_cols=35  Identities=23%  Similarity=0.451  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +..+|+|+|| |++|.-+|..|.+.|.  +|+++++.+
T Consensus        29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~--~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGG-GVIGLELAATARTAGV--HVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cCCeEEEECc-chhHHHHHHHhhcccc--eEEEEeecc
Confidence            4569999999 9999999999999999  999999864

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.44  E-value=0.0027  Score=44.04  Aligned_cols=34  Identities=18%  Similarity=0.315  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      .+.||+|+|| |++|.-+|..|...|.  +|+++++.
T Consensus        21 ~p~~v~IiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~   54 (117)
T d1onfa2          21 ESKKIGIVGS-GYIAVELINVIKRLGI--DSYIFARG   54 (117)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSS
T ss_pred             CCCEEEEECC-chHHHHHHHHHHhccc--cceeeehh
Confidence            3679999999 9999999999999998  99999984

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.43  E-value=0.0021  Score=44.93  Aligned_cols=41  Identities=17%  Similarity=-0.014  Sum_probs=34.8

Q ss_pred             ccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        21 ~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +++....|.+++|+|| |++|.-+|..|.+.|.  +|+++.+++
T Consensus        13 ~~~l~~~P~~vvIIGg-G~iG~E~A~~l~~lG~--~Vtii~~~~   53 (122)
T d1h6va2          13 LFSLPYCPGKTLVVGA-SYVALECAGFLAGIGL--DVTVMVRSI   53 (122)
T ss_dssp             HTTCSSCCCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             HhCcccCCCeEEEECC-CccHHHHHHHHhhcCC--eEEEEEech
Confidence            4455556679999999 9999999999999998  999998763

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0058  Score=45.33  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=30.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      -++|+|+|.|.-+|..++..|.++|-  .|..++.+
T Consensus        39 Gk~vvVIGrS~iVGrPLa~lL~~~ga--tVt~~~~~   72 (170)
T d1a4ia1          39 GRHAVVVGRSKIVGAPMHDLLLWNNA--TVTTCHSK   72 (170)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTT
T ss_pred             cceEEEEecCCccchHHHHHHHhccC--ceEEEecc
Confidence            36999999999999999999999997  88888763

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.39  E-value=0.012  Score=46.24  Aligned_cols=33  Identities=15%  Similarity=0.201  Sum_probs=29.9

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGasG--~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ++++||||+|  .+|..++..|++.|.  +|++.+++
T Consensus         9 K~alVTGass~~GIG~aiA~~la~~Ga--~Vvi~~~~   43 (297)
T d1d7oa_           9 KRAFIAGIADDNGYGWAVAKSLAAAGA--EILVGTWV   43 (297)
T ss_dssp             CEEEEECCSSSSSHHHHHHHHHHHTTC--EEEEEEEH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCc
Confidence            5899999976  699999999999999  99999885

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0085  Score=43.90  Aligned_cols=68  Identities=13%  Similarity=0.181  Sum_probs=45.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH--HHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~--~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      .++|+|+|| |..+++++..|.+.|.  +|++++|+..++.  ...+....   .+...  +.+ +....++|+||++.
T Consensus        18 ~k~vlIlGa-GGaarai~~al~~~g~--~i~I~nRt~~ka~~l~~~~~~~~---~~~~~--~~~-~~~~~~~dliIN~T   87 (170)
T d1nyta1          18 GLRILLIGA-GGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHTG---SIQAL--SMD-ELEGHEFDLIINAT   87 (170)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHTGGGS---SEEEC--CSG-GGTTCCCSEEEECC
T ss_pred             CCEEEEECC-cHHHHHHHHHhcccce--EEEeccchHHHHHHHHHHHhhcc---ccccc--ccc-cccccccceeeccc
Confidence            358999999 9999999999999997  8999999753222  22222221   22222  111 22346799999985

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=96.38  E-value=0.015  Score=45.43  Aligned_cols=32  Identities=22%  Similarity=0.209  Sum_probs=28.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .+||||++.+|..++..|++.|.  +|++.+++.
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   36 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRS   36 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCC
Confidence            35779999999999999999999  999988753

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.37  E-value=0.0029  Score=48.61  Aligned_cols=51  Identities=20%  Similarity=0.267  Sum_probs=39.5

Q ss_pred             ccccccccccc--------cCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           11 TLAKPAGARGY--------SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        11 ~~~~~~~~~~~--------~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .+-.|+.+|.+        .+......||+|+|| |..|...|..|.+.|+  ++.+++...
T Consensus        24 c~~n~~~~~e~~~~~~p~~~~~~~~~k~VvIIGa-GpAGl~aA~~l~~~G~--~v~l~E~~~   82 (233)
T d1djqa3          24 CTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGA-GPSGSEAARVLMESGY--TVHLTDTAE   82 (233)
T ss_dssp             CSSCTTTTTHHHHCCCSSCCCCCSSCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             eecCcccChHHhcCCCCCccCcccCCceEEEEcc-cHHHHHHHHHHHHhcc--ceeeEeecc
Confidence            34455566552        233445579999999 9999999999999999  999999853

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0036  Score=46.29  Aligned_cols=55  Identities=22%  Similarity=0.437  Sum_probs=41.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      .++|+|+|.|..+|..++..|.++|.  .|+.++..                       +.++++.+++||+||.++|.+
T Consensus        37 GK~v~VIGrS~~VG~Pla~lL~~~ga--tVt~~h~~-----------------------t~~l~~~~~~ADivI~a~G~p   91 (166)
T d1b0aa1          37 GLNAVVIGASNIVGRPMSMELLLAGC--TTTVTHRF-----------------------TKNLRHHVENADLLIVAVGKP   91 (166)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTTC--EEEEECSS-----------------------CSCHHHHHHHCSEEEECSCCT
T ss_pred             cceEEEEeccccccHHHHHHHHHhhc--cccccccc-----------------------cchhHHHHhhhhHhhhhccCc
Confidence            36999999988999999999999997  78777542                       123445566777777777755

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.36  E-value=0.022  Score=41.25  Aligned_cols=65  Identities=23%  Similarity=0.244  Sum_probs=39.6

Q ss_pred             CeEEEEcCCCchHHH-HHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCCCcceeEeecCCchhhhcC-CCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~-la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~~-~aD~Vi~~a  104 (209)
                      |||+|+|+ |.+|+. ....+.+.+.. +++++|.++...  ...++....      .   .+|+++.++ +.|+|+++.
T Consensus         2 irvgiiG~-G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~------~---~~~~~~ll~~~iD~V~I~t   70 (167)
T d1xeaa1           2 LKIAMIGL-GDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRVSA------T---CTDYRDVLQYGVDAVMIHA   70 (167)
T ss_dssp             EEEEEECC-CHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTCCC------C---CSSTTGGGGGCCSEEEECS
T ss_pred             eEEEEEcC-CHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHhccccc------c---cccHHHhcccccceecccc
Confidence            69999999 999976 45556555432 888898875322  122222211      1   124455553 789999984

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.35  E-value=0.0036  Score=51.52  Aligned_cols=93  Identities=16%  Similarity=0.238  Sum_probs=60.1

Q ss_pred             hhhhhhccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEecCCch--hHHHhhcCCCCCcce
Q 028437            5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANTP--GVAADVGHINTRSEV   81 (209)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~-~g~~~ev~l~D~~~~~--~~~~dl~~~~~~~~v   81 (209)
                      .|-.++|-|-.+-+-+++.+. ....++|+|+ |..+..-+..+.. .+ +.+|.++|+++..  ....++.... ...+
T Consensus       106 ~LTa~RTaA~salaa~~LA~~-da~~l~iiG~-G~QA~~~~~a~~~v~~-i~~V~v~~r~~~~~~~~~~~l~~~~-g~~v  181 (340)
T d1x7da_         106 IATALRTAATSLMAAQALARP-NARKMALIGN-GAQSEFQALAFHKHLG-IEEIVAYDTDPLATAKLIANLKEYS-GLTI  181 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCT-TCCEEEEECC-STTHHHHHHHHHHHSC-CCEEEEECSSHHHHHHHHHHHTTCT-TCEE
T ss_pred             hhhhhHHHHHHHHHHHHhhcc-CCceEEEEcc-cHHHHHHHHHHhhhcc-eeeeEEEecChHHHHHHHHhhhhcc-CCCc
Confidence            344555555555555565442 4458999999 9998876665544 44 5799999998632  2344554321 2233


Q ss_pred             eEeecCCchhhhcCCCCEEEEcC
Q 028437           82 AGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        82 ~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ..   .+++++++++||+|+.+.
T Consensus       182 ~~---~~s~~eav~~ADIi~t~T  201 (340)
T d1x7da_         182 RR---ASSVAEAVKGVDIITTVT  201 (340)
T ss_dssp             EE---CSSHHHHHTTCSEEEECC
T ss_pred             ee---cCCHHHHHhcCCceeecc
Confidence            33   357899999999999864

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.30  E-value=0.0023  Score=49.31  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      |+||+|+|| |..|..+|..|.+.|. .+|.++++.+
T Consensus         1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi-~~V~V~Er~~   35 (288)
T d3c96a1           1 PIDILIAGA-GIGGLSCALALHQAGI-GKVTLLESSS   35 (288)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC-CeEEEEeCCC
Confidence            579999999 9999999999999993 2889999853

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0023  Score=44.14  Aligned_cols=36  Identities=28%  Similarity=0.383  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .-+.||+|+|+ |++|.-++..|.+.|.  +|+++++.+
T Consensus        19 ~~p~~vvIiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   54 (116)
T d1gesa2          19 ALPERVAVVGA-GYIGVELGGVINGLGA--KTHLFEMFD   54 (116)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             hCCCEEEEECC-ChhhHHHHHHhhcccc--EEEEEeecc
Confidence            34569999999 9999999999999998  999999853

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.29  E-value=0.0022  Score=49.14  Aligned_cols=33  Identities=30%  Similarity=0.572  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +||+|||| |..|...|..|.+.|+  +|.+++..+
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~--~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGL--NVTVFEAEG   34 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSC--EEEEECSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            48999999 9999999999999999  999999753

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0076  Score=43.71  Aligned_cols=66  Identities=17%  Similarity=0.233  Sum_probs=40.8

Q ss_pred             CCeEEEEcCCCchHHH-HHHHHHhCCCccEEEEEecCCchhH--HHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~-la~~L~~~g~~~ev~l~D~~~~~~~--~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ++||+|+|+ |.+|.. .+..+...+.+.-+.++|+++....  ..++. ..      .   .+++++..++.|+|+++.
T Consensus         1 Kiri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~-~~------~---~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           1 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR-IP------Y---ADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT-CC------B---CSSHHHHHTTCSEEEECS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccc-cc------c---cccchhhhhhcccccccc
Confidence            369999998 999975 4666665543434457777653221  12221 11      1   235566678999999884

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.22  E-value=0.0075  Score=44.18  Aligned_cols=36  Identities=25%  Similarity=0.457  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT   65 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~   65 (209)
                      ..||+|+|+ |.++++++..|.+.|. .+|.+++|+..
T Consensus        17 ~~~vlIlGa-GGaarai~~aL~~~g~-~~I~I~nR~~~   52 (167)
T d1npya1          17 NAKVIVHGS-GGMAKAVVAAFKNSGF-EKLKIYARNVK   52 (167)
T ss_dssp             TSCEEEECS-STTHHHHHHHHHHTTC-CCEEEECSCHH
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCC-CEEEEecccHH
Confidence            358999999 9999999999999885 58999999753

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0042  Score=46.20  Aligned_cols=74  Identities=19%  Similarity=0.249  Sum_probs=47.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-H----HHhhcCCCCCcceeEee--cCCchhhhcCCCCEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-V----AADVGHINTRSEVAGYM--GNDQLGQALEDSDVVI  101 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~----~~dl~~~~~~~~v~~~~--~~~d~~~a~~~aD~Vi  101 (209)
                      .+|+|+|+ |..|.+++..|...|. .++++++|++... .    ..++... .........  ...++.+.+.++|+||
T Consensus        19 k~vlIlGa-GGaarai~~al~~~g~-~~i~i~nR~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~diiI   95 (182)
T d1vi2a1          19 KTMVLLGA-GGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNEN-TDCVVTVTDLADQQAFAEALASADILT   95 (182)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHHHTCSEEE
T ss_pred             CEEEEECC-cHHHHHHHHHHhhcCC-ceEeeeccchHHHHHHHHHHHHHHhh-cCcceEeeecccccchhhhhcccceec
Confidence            59999999 9999999999999875 6999999975321 1    1222221 111111111  1123456678999999


Q ss_pred             EcCC
Q 028437          102 IPAG  105 (209)
Q Consensus       102 ~~ag  105 (209)
                      ++..
T Consensus        96 N~Tp   99 (182)
T d1vi2a1          96 NGTK   99 (182)
T ss_dssp             ECSS
T ss_pred             cccC
Confidence            9954

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.20  E-value=0.0039  Score=43.44  Aligned_cols=33  Identities=27%  Similarity=0.329  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ..+|+|+|| |++|.-+|..|.+.|.  +|+++++.
T Consensus        30 ~k~vvViGg-G~iG~E~A~~l~~~g~--~Vtlie~~   62 (123)
T d1nhpa2          30 VNNVVVIGS-GYIGIEAAEAFAKAGK--KVTVIDIL   62 (123)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESS
T ss_pred             CCEEEEECC-hHHHHHHHHHhhccce--EEEEEEec
Confidence            458999999 9999999999999999  99999885

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.20  E-value=0.0029  Score=51.17  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .+||+|+|| |.-|...|..|.+.|+  +|.+++.+.
T Consensus         2 ~KKI~IIGa-G~sGL~aA~~L~k~G~--~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGA-GFSGAVIGRQLAEKGH--QVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCC--CEEEEECCC
Confidence            469999999 9999999999999999  999999865

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.17  E-value=0.0023  Score=47.17  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +.||+|||| |..|...|..|.+.|+ ++|+++++.+
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~-~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGY-SDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTC-CCEEEEESSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCC-CeEEEEEecC
Confidence            359999999 9999999999999997 2599999864

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.15  E-value=0.0025  Score=47.50  Aligned_cols=34  Identities=21%  Similarity=0.121  Sum_probs=29.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      |||+|+|| |++|..+|..|.+.+.-.+|++++++
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            79999999 99999999999876543499999875

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0054  Score=42.19  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ...||.|+|+ |+.|+-++....+.|+  +++++|.++
T Consensus        10 ~~~kigIlGg-GQL~rMla~aA~~lG~--~v~v~d~~~   44 (111)
T d1kjqa2          10 AATRVMLLGS-GELGKEVAIECQRLGV--EVIAVDRYA   44 (111)
T ss_dssp             TCCEEEEESC-SHHHHHHHHHHHTTTC--EEEEEESST
T ss_pred             CCCEEEEEeC-CHHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            3459999999 9999999999999999  999999864

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.14  E-value=0.0037  Score=44.23  Aligned_cols=37  Identities=27%  Similarity=0.424  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ..++.+|+|+|| |++|.-+|..|...|.  +|+++++.+
T Consensus        32 ~~~~k~v~VIGg-G~iG~E~A~~l~~~g~--~Vtvie~~~   68 (133)
T d1q1ra2          32 LIADNRLVVIGG-GYIGLEVAATAIKANM--HVTLLDTAA   68 (133)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             hccCCEEEEECC-chHHHHHHHHHHhhCc--ceeeeeecc
Confidence            345679999999 9999999999999999  999999853

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.10  E-value=0.0036  Score=42.95  Aligned_cols=36  Identities=17%  Similarity=0.295  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ...|.+++|+|| |++|.-+|..|.+.|.  +|+++++.
T Consensus        18 ~~~p~~vvIiGg-G~~G~E~A~~l~~~g~--~Vtlve~~   53 (115)
T d1lvla2          18 KALPQHLVVVGG-GYIGLELGIAYRKLGA--QVSVVEAR   53 (115)
T ss_dssp             SSCCSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSS
T ss_pred             ccCCCeEEEECC-CHHHHHHHHHHhhccc--ceEEEeee
Confidence            344569999999 9999999999999998  99999985

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0051  Score=49.53  Aligned_cols=106  Identities=24%  Similarity=0.281  Sum_probs=64.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHH----hCCC-----ccEEEEEecCCc--hhHHHhhcCCCC-CcceeEeecCCchhhhcC-
Q 028437           29 RKVAVLGAAGGIGQPLALLMK----LNPL-----VSRLALYDIANT--PGVAADVGHINT-RSEVAGYMGNDQLGQALE-   95 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~----~~g~-----~~ev~l~D~~~~--~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~-   95 (209)
                      .||++.|| |..|..++..|.    +.|+     .++++++|++-+  +....++..... ..+-.......+++++++ 
T Consensus        26 ~kiv~~GA-GsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~  104 (294)
T d1pj3a1          26 HKILFLGA-GEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI  104 (294)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHH
T ss_pred             cEEEEECc-cHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHh
Confidence            49999999 999999887654    3454     147999999631  111111111100 000000001235777765 


Q ss_pred             -CCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437           96 -DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus        96 -~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                       +.|++|-+.+.+.              -+.+++++.|.+.+++.+|+-.|||..
T Consensus       105 ~kptvliG~S~~~g--------------~ft~evi~~Ma~~~~~PIIFaLSNPt~  145 (294)
T d1pj3a1         105 LKPSTIIGVAGAGR--------------LFTPDVIRAMASINERPVIFALSNPTA  145 (294)
T ss_dssp             HCCSEEEECCCSSC--------------CSCHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             cCCceEEEecCCCC--------------cCCHHHHHHHHhcCCCcEEEEccCCCC
Confidence             7888888766542              122677788888899999999999964

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.00  E-value=0.02  Score=44.13  Aligned_cols=99  Identities=19%  Similarity=0.236  Sum_probs=63.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--h--------hHHHhhcCCCCCcceeEeecCCchhhhcCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P--------GVAADVGHINTRSEVAGYMGNDQLGQALED   96 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~--------~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~   96 (209)
                      ...||++.|| |..|..++..+.+.+. ++++++|++-+  .        ....++.+......     ...++.+++++
T Consensus        25 ~d~riv~~GA-GsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~g   97 (222)
T d1vl6a1          25 EEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARITNPER-----LSGDLETALEG   97 (222)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTC-----CCSCHHHHHTT
T ss_pred             hhcEEEEECh-HHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHHhhhcchh-----hhcchHhhccC
Confidence            3459999999 9999999999988775 69999999621  0        01111111110111     12367889999


Q ss_pred             CCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 028437           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~  150 (209)
                      ++.++-+..    ++.-..              +.|++.++..+|+-.|||...
T Consensus        98 ~~~~~g~~~----~~~~~~--------------e~m~~~~~rPIIFpLSNPt~~  133 (222)
T d1vl6a1          98 ADFFIGVSR----GNILKP--------------EWIKKMSRKPVIFALANPVPE  133 (222)
T ss_dssp             CSEEEECSC----SSCSCH--------------HHHTTSCSSCEEEECCSSSCS
T ss_pred             cceeccccc----cccccH--------------HHHhhcCCCCEEEecCCCccc
Confidence            998776642    221111              345666777788888999764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.97  E-value=0.021  Score=41.84  Aligned_cols=35  Identities=14%  Similarity=0.176  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      -.+|+|+|| |.+|...++.+...|. ..|+.+|+++
T Consensus        29 G~~VlV~Ga-G~iG~~~~~~ak~~Ga-~~Vi~~~~~~   63 (182)
T d1vj0a2          29 GKTVVIQGA-GPLGLFGVVIARSLGA-ENVIVIAGSP   63 (182)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTB-SEEEEEESCH
T ss_pred             CCEEEEECC-Cccchhheeccccccc-cccccccccc
Confidence            358999998 9999999988888885 3799999975

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.91  E-value=0.0072  Score=41.71  Aligned_cols=39  Identities=21%  Similarity=0.191  Sum_probs=33.6

Q ss_pred             cCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        22 ~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      +.....|.||+|+|| |++|.-+|..|.+.|.  +|.++.+.
T Consensus        16 l~l~~~p~~i~IiG~-G~ig~E~A~~l~~~G~--~Vtiv~~~   54 (119)
T d3lada2          16 LDFQNVPGKLGVIGA-GVIGLELGSVWARLGA--EVTVLEAM   54 (119)
T ss_dssp             TSCSSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESS
T ss_pred             hCcccCCCeEEEECC-ChHHHHHHHHHHHcCC--ceEEEEee
Confidence            344445679999999 9999999999999999  99999875

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=95.91  E-value=0.017  Score=43.57  Aligned_cols=74  Identities=19%  Similarity=0.253  Sum_probs=48.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCc-cEEEEEecCCchhHHHhhcCCCCCcceeE---------------------eec
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLV-SRLALYDIANTPGVAADVGHINTRSEVAG---------------------YMG   86 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~-~ev~l~D~~~~~~~~~dl~~~~~~~~v~~---------------------~~~   86 (209)
                      +||.|+|. |..|.+++..+.+.+.- -+.+.+|.|..     .|.....+.++..                     ...
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~~-----~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~   74 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDLQ-----VLEASNADVKIQIGENITRGLGAGGRPEIGEQAALES   74 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCHH-----HHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHT
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCHH-----HHhcCCcceEEecccccCCCcccccCchhhHhHHHHH
Confidence            58999999 99999999998887652 28888888741     1222111100000                     000


Q ss_pred             CCchhhhcCCCCEEEEcCCCCC
Q 028437           87 NDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        87 ~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      .+.+.+.++++|+||++||...
T Consensus        75 ~~~I~~~l~~~d~vfi~AGlGG   96 (194)
T d1w5fa1          75 EEKIREVLQDTHMVFITAGFGG   96 (194)
T ss_dssp             HHHHHHHTTTCSEEEEEEETTS
T ss_pred             HHHHHHHhcCCCeEEEEEecCC
Confidence            1245677899999999998763

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.91  E-value=0.0046  Score=43.19  Aligned_cols=92  Identities=11%  Similarity=0.003  Sum_probs=54.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCc---hh-hhcCCCCEEEEcCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LG-QALEDSDVVIIPAG  105 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~-~a~~~aD~Vi~~ag  105 (209)
                      .|.|+|. |.+|..++..|.  +.  ++.++|.++....  .+...... .+.+  ..++   ++ .-+.+|+.++.+..
T Consensus         2 HivI~G~-g~~g~~l~~~L~--~~--~i~vi~~d~~~~~--~~~~~~~~-~i~G--d~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           2 HVVICGW-SESTLECLRELR--GS--EVFVLAEDENVRK--KVLRSGAN-FVHG--DPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             CEEEESC-CHHHHHHHHTSC--GG--GEEEEESCTTHHH--HHHHTTCE-EEES--CTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             EEEEECC-CHHHHHHHHHHc--CC--CCEEEEcchHHHH--HHHhcCcc-cccc--ccCCHHHHHHhhhhcCcEEEEecc
Confidence            5889999 999999999884  44  6788888764222  22222211 1111  1112   22 33678999999742


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecC
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~sn  146 (209)
                      -           -..|+    .++..+++.+|+.+++.-.+
T Consensus        72 ~-----------d~~n~----~~~~~~r~~~~~~~iia~~~   97 (129)
T d2fy8a1          72 S-----------DSETI----HCILGIRKIDESVRIIAEAE   97 (129)
T ss_dssp             S-----------HHHHH----HHHHHHHHHCSSSCEEEECS
T ss_pred             c-----------hhhhH----HHHHHHHHHCCCceEEEEEc
Confidence            1           13443    34456677889876665554

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.90  E-value=0.048  Score=39.88  Aligned_cols=102  Identities=19%  Similarity=0.212  Sum_probs=61.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCcceeEeecCCchhh-----hcCCCCE
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQ-----ALEDSDV   99 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~-----a~~~aD~   99 (209)
                      ++..+|+|+|+ |.+|...++.+...|. ..|+..|.++. ...+.++.....   +.........++     .-.++|+
T Consensus        27 ~~G~~VlV~G~-G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~Ga~~~---i~~~~~~~~~~~~~~~~~~~G~d~  101 (174)
T d1e3ia2          27 TPGSTCAVFGL-GCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKALGATDC---LNPRELDKPVQDVITELTAGGVDY  101 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCSEE---ECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHhCCCcc---cCCccchhhhhhhHhhhhcCCCcE
Confidence            34469999998 9999999998888884 47888898753 223344433221   000000011111     1258999


Q ss_pred             EEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCC-eEEEEecCCCCC
Q 028437          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN-AIVNMISNPVNS  150 (209)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~-~~viv~snP~~~  150 (209)
                      ||.++|.+.                  .+-..++-..|. +++++++.|.+.
T Consensus       102 vie~~G~~~------------------~~~~a~~~~~~g~G~~v~vG~~~~~  135 (174)
T d1e3ia2         102 SLDCAGTAQ------------------TLKAAVDCTVLGWGSCTVVGAKVDE  135 (174)
T ss_dssp             EEESSCCHH------------------HHHHHHHTBCTTTCEEEECCCSSSE
T ss_pred             EEEecccch------------------HHHHHHHHhhcCCeEEEecCCCCCc
Confidence            999987541                  112233333464 789999888664

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0072  Score=42.08  Aligned_cols=36  Identities=17%  Similarity=0.123  Sum_probs=32.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ..-+.+|+|+|+ |++|.-++..|...|.  +|+++.+.
T Consensus        19 ~~~pk~vvIvGg-G~iG~E~A~~l~~~G~--~Vtlv~~~   54 (125)
T d3grsa2          19 EELPGRSVIVGA-GYIAVEMAGILSALGS--KTSLMIRH   54 (125)
T ss_dssp             CSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSS
T ss_pred             hhcCCEEEEEcC-CccHHHHHHHHhcCCc--EEEEEeec
Confidence            334569999999 9999999999999998  99999995

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.81  E-value=0.013  Score=43.20  Aligned_cols=68  Identities=13%  Similarity=0.205  Sum_probs=41.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEE-EEecCCchhH--HHhhcCCCCCcceeEeecCCchhhhc--CCCCEEEEc
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQAL--EDSDVVIIP  103 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~-l~D~~~~~~~--~~dl~~~~~~~~v~~~~~~~d~~~a~--~~aD~Vi~~  103 (209)
                      +||+|+|+ |.+|+..+..+...+.+ +|+ ++|+++....  .....   .+.....+   +|+++.+  .+.|+|+++
T Consensus         2 iki~iIG~-G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~~~~~~~---~~~~~~~~---~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           2 IRIGVMGC-ADIARKVSRAIHLAPNA-TISGVASRSLEKAKAFATANN---YPESTKIH---GSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             EEEEEESC-CTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTT---CCTTCEEE---SSHHHHHHCTTCCEEEEC
T ss_pred             eEEEEEcC-CHHHHHHHHHHHhCCCC-EEEEEEeCCccccccchhccc---cccceeec---CcHHHhhhccccceeeec
Confidence            69999998 99999988888765433 666 5677643221  11111   11122222   3566665  468999987


Q ss_pred             C
Q 028437          104 A  104 (209)
Q Consensus       104 a  104 (209)
                      .
T Consensus        74 t   74 (184)
T d1ydwa1          74 L   74 (184)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.79  E-value=0.0043  Score=47.40  Aligned_cols=34  Identities=32%  Similarity=0.556  Sum_probs=31.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +.++||||++.+|..++..|++.|.  +|++.|+++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   35 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRR   35 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            3688999999999999999999999  999999975

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0058  Score=47.13  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +..||+|||| |.-|.+.|..|.+.|+  +|.++....
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~--~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGM--DVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            4458999999 9999999999999999  999998753

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.78  E-value=0.0046  Score=44.35  Aligned_cols=35  Identities=31%  Similarity=0.385  Sum_probs=30.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +||+|+|| |++|..++..|.+.+.-.+|++++.++
T Consensus         3 krivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            49999999 999999999998876433999999864

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.005  Score=39.76  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +++|+|+|+ |+.|+-++......|+  +++.+|.++
T Consensus         1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~--~v~vldp~~   34 (78)
T d3etja2           1 MKQVCVLGN-GQLGRMLRQAGEPLGI--AVWPVGLDA   34 (78)
T ss_dssp             CEEEEEEBC-SHHHHHHHHHHGGGTE--EEEEECTTS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCC--EEEEEcCCC
Confidence            358999999 9999999999999999  999999864

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.74  E-value=0.0032  Score=49.31  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=30.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +|+|+|| |.+|..+|..|.+.|+  ++.++|+.+
T Consensus         4 ~V~IvGa-Gp~Gl~~A~~L~~~G~--~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQT   35 (292)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            8999999 9999999999999999  999999863

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.74  E-value=0.0042  Score=48.11  Aligned_cols=32  Identities=25%  Similarity=0.456  Sum_probs=29.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      -|+|||| |.+|.++|..|+++|.  +|+++|++.
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~--~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENK--NTALFESGT   37 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4999999 9999999999999998  999999864

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.71  E-value=0.019  Score=41.90  Aligned_cols=95  Identities=13%  Similarity=0.172  Sum_probs=57.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhc------CCCCEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL------EDSDVVI  101 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~aD~Vi  101 (209)
                      ..+|+|+||+|.+|...++.+...|.  +++..+.++.  +...+...... .+-.. ...++.+.+      +++|+|+
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~--~vi~~~~~~~--~~~~l~~~Ga~-~vi~~-~~~~~~~~v~~~t~~~g~d~v~   99 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDA--KREMLSRLGVE-YVGDS-RSVDFADEILELTDGYGVDVVL   99 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHH--HHHHHHTTCCS-EEEET-TCSTHHHHHHHHTTTCCEEEEE
T ss_pred             CCEEEEECCCCCcccccchhhccccc--cceeeecccc--ccccccccccc-ccccC-CccCHHHHHHHHhCCCCEEEEE
Confidence            35899999999999999998888887  8888777532  22223333222 11111 123444443      5789999


Q ss_pred             EcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      .++|.         +.+       .+..+.+   .+.++++.++++
T Consensus       100 d~~g~---------~~~-------~~~~~~l---~~~G~~v~~G~~  126 (183)
T d1pqwa_         100 NSLAG---------EAI-------QRGVQIL---APGGRFIELGKK  126 (183)
T ss_dssp             ECCCT---------HHH-------HHHHHTE---EEEEEEEECSCG
T ss_pred             ecccc---------hHH-------HHHHHHh---cCCCEEEEEccC
Confidence            98751         111       2222332   467899888654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.71  E-value=0.013  Score=43.11  Aligned_cols=96  Identities=20%  Similarity=0.215  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCchhhh----c--CCCCE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQA----L--EDSDV   99 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a----~--~~aD~   99 (209)
                      +-.+|+|+|+ |.+|...++.+...|. .+|+.+|+++.+ ..+.++....   .+ ... .+++.+.    .  +++|+
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lGa~~---~i-~~~-~~~~~~~v~~~t~g~G~D~   99 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYGATD---IL-NYK-NGHIEDQVMKLTNGKGVDR   99 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHTCSE---EE-CGG-GSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEEcC-Ccchhhhhhhhhcccc-cccccccchhhhHHHHHhhCccc---cc-ccc-chhHHHHHHHHhhccCcce
Confidence            3458999998 9999998888887774 379999987532 2233333211   01 011 1222222    2  35899


Q ss_pred             EEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ||.++|.+.        .       +.+.   ++-..|.+++++++.+
T Consensus       100 vid~~g~~~--------~-------~~~a---~~~~~~~G~iv~~G~~  129 (174)
T d1jqba2         100 VIMAGGGSE--------T-------LSQA---VKMVKPGGIISNINYH  129 (174)
T ss_dssp             EEECSSCTT--------H-------HHHH---HHHEEEEEEEEECCCC
T ss_pred             EEEccCCHH--------H-------HHHH---HHHHhcCCEEEEEeec
Confidence            999987542        1       1122   2222478888888754

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.69  E-value=0.0047  Score=45.88  Aligned_cols=78  Identities=23%  Similarity=0.296  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh----HHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG----VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~----~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      .-++|+|+|-|.-||..++..|.++|-  .|..++.+....    ....+.+... ..+..+. .+.+++....+|+||.
T Consensus        28 ~GK~vvVIGrS~iVG~Pla~lL~~~ga--TVt~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~lk~~~~~aDIvIs  103 (171)
T d1edza1          28 YGKKCIVINRSEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLNKHHV-EDLGEYS-EDLLKKCSLDSDVVIT  103 (171)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCCCCEE-EEEEECC-HHHHHHHHHHCSEEEE
T ss_pred             CCCEEEEECCccccHHHHHHHHHHCCC--EEEEeccccccccccccceeeeeecc-ccccccc-hhHHhhccccCCEEEE
Confidence            335999999988899999999999987  888888752110    0011111110 0111111 1236777889999999


Q ss_pred             cCCCCC
Q 028437          103 PAGVPR  108 (209)
Q Consensus       103 ~ag~~~  108 (209)
                      ++|.+.
T Consensus       104 avG~p~  109 (171)
T d1edza1         104 GVPSEN  109 (171)
T ss_dssp             CCCCTT
T ss_pred             ccCCCc
Confidence            998765

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.66  E-value=0.007  Score=41.92  Aligned_cols=34  Identities=21%  Similarity=0.228  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ..+|+|+|| |++|.-+|..|.+.|.  +|+++++.+
T Consensus        32 ~~~vvIiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGG-GFIGLELAGNLAEAGY--HVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEEC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCcEEEECC-cHHHHHHHHHhhcccc--eEEEEeccc
Confidence            358999999 9999999999999998  999999864

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.62  E-value=0.19  Score=35.39  Aligned_cols=113  Identities=11%  Similarity=0.008  Sum_probs=66.4

Q ss_pred             CCeEEEEcCC---CchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           28 DRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        28 ~~kI~IiGas---G~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      +.+|+|+|||   +..|..++..|.+.|+  +|+.+..+.     .++.....         -.++++.=...|+|+++.
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~--~v~pVnP~~-----~~i~G~~~---------~~sl~dlp~~iD~v~i~v   82 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGY--DVYPVNPKY-----EEVLGRKC---------YPSVLDIPDKIEVVDLFV   82 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTC-----SEETTEEC---------BSSGGGCSSCCSEEEECS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCC--EEEEECCcc-----cccCCCcc---------cccccccCccceEEEEEe
Confidence            3489999997   6889999999999999  888886532     12222211         123434334689999884


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eh-hhHHH
Q 028437          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TT-LDVVR  180 (209)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~-~~-lds~r  180 (209)
                      .                .+.+.++++++.+.+..+.++   +|....- -+.+.+++.+ +   +++|= |. .+..|
T Consensus        83 p----------------~~~~~~~~~e~~~~g~k~v~~---~~G~~~e-e~~~~a~~~g-i---~vig~~C~~v~~~r  136 (139)
T d2d59a1          83 K----------------PKLTMEYVEQAIKKGAKVVWF---QYNTYNR-EASKKADEAG-L---IIVANRCMMREHER  136 (139)
T ss_dssp             C----------------HHHHHHHHHHHHHHTCSEEEE---CTTCCCH-HHHHHHHHTT-C---EEEESCCHHHHHHH
T ss_pred             C----------------HHHHHHHHHHHHHhCCCEEEE---eccccCH-HHHHHHHHCC-C---EEEcCCcChhhhhh
Confidence            2                244566666666666654333   3332221 3444555442 2   56665 64 34433

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.55  E-value=0.013  Score=43.62  Aligned_cols=77  Identities=19%  Similarity=0.178  Sum_probs=43.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEE-ecCCchhHHHhh-cCCCC---Ccce-----eEeecCCchhhhcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANTPGVAADV-GHINT---RSEV-----AGYMGNDQLGQALEDS   97 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~-D~~~~~~~~~dl-~~~~~---~~~v-----~~~~~~~d~~~a~~~a   97 (209)
                      |.||+|.|- |.||+.++..+.+++-+ +|+.+ |..+......-+ .....   ....     ..+....++.+...++
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~di-evVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~v   78 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDM-KLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTS   78 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTE-EEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHC
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCC-EEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcC
Confidence            459999998 99999999999887644 56555 443321111101 11000   0000     0000123566777899


Q ss_pred             CEEEEcCCC
Q 028437           98 DVVIIPAGV  106 (209)
Q Consensus        98 D~Vi~~ag~  106 (209)
                      |+|+.|.|.
T Consensus        79 DiViecTG~   87 (178)
T d1b7go1          79 DIVVDTTPN   87 (178)
T ss_dssp             SEEEECCST
T ss_pred             CEEEECCCC
Confidence            999999764

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.53  E-value=0.00085  Score=51.00  Aligned_cols=34  Identities=29%  Similarity=0.332  Sum_probs=28.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC----ccEEEEEecC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPL----VSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~----~~ev~l~D~~   63 (209)
                      |||+|+|| |-+|.+.|..|++.|+    +.++.+++..
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence            79999999 9999999999999875    2466777653

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.51  E-value=0.0058  Score=42.50  Aligned_cols=41  Identities=22%  Similarity=0.228  Sum_probs=34.8

Q ss_pred             ccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        21 ~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ++.....|.+++|+|| |++|.-+|..+...|.  +|+++.+.+
T Consensus        18 ~l~l~~~p~~~viiG~-G~iglE~A~~~~~~G~--~Vtvi~~~~   58 (123)
T d1dxla2          18 ALALSEIPKKLVVIGA-GYIGLEMGSVWGRIGS--EVTVVEFAS   58 (123)
T ss_dssp             HTTCSSCCSEEEESCC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             hhCccccCCeEEEEcc-chHHHHHHHHHHhcCC--eEEEEEEcc
Confidence            3444556679999999 9999999999999998  999998853

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.013  Score=49.43  Aligned_cols=34  Identities=32%  Similarity=0.543  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .||+|+|+ |.+|..++..|+..|. ++|.++|.|.
T Consensus        38 ~kVlvvG~-GglG~ei~k~L~~~Gv-g~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGA-GGLGCELLKNLALSGF-RQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECS-STTHHHHHHHHHTTTC-CCEEEECCCB
T ss_pred             CeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCC
Confidence            49999999 9999999999999996 6999999973

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.017  Score=41.90  Aligned_cols=102  Identities=17%  Similarity=0.176  Sum_probs=61.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCcceeEeecCCc-hhhhcCCCCEEEE
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQ-LGQALEDSDVVII  102 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d-~~~a~~~aD~Vi~  102 (209)
                      .++..+|+|+|+ |.+|...++.+...|.  +++.+|+++. ...+.++....   .+ ......+ .++..++.|+|+.
T Consensus        25 ~~~g~~vlI~Ga-G~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~lGa~~---~i-~~~~~~~~~~~~~~~~d~vi~   97 (168)
T d1piwa2          25 CGPGKKVGIVGL-GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKMGADH---YI-ATLEEGDWGEKYFDTFDLIVV   97 (168)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHHTCSE---EE-EGGGTSCHHHHSCSCEEEEEE
T ss_pred             cCCCCEEEEECC-CCcchhHHHHhhhccc--cccccccchhHHHHhhccCCcE---Ee-eccchHHHHHhhhcccceEEE
Confidence            334569999998 9999998888888887  8999998753 22333443211   11 1111112 2344567899999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      +++.......+                ..++-..|.+++++++-|..
T Consensus        98 ~~~~~~~~~~~----------------~~~~~l~~~G~iv~~G~~~~  128 (168)
T d1piwa2          98 CASSLTDIDFN----------------IMPKAMKVGGRIVSISIPEQ  128 (168)
T ss_dssp             CCSCSTTCCTT----------------TGGGGEEEEEEEEECCCCCS
T ss_pred             EecCCccchHH----------------HHHHHhhccceEEEeccccc
Confidence            87654321110                11222347788888875543

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=95.47  E-value=0.025  Score=43.15  Aligned_cols=71  Identities=15%  Similarity=0.137  Sum_probs=40.7

Q ss_pred             CCCeEEEEcCCCchHH-HHHHHHHhCCCccEEE-EEecCCchhH--HHhhcCCCCCcceeEeecCCchhhhcC--CCCEE
Q 028437           27 PDRKVAVLGAAGGIGQ-PLALLMKLNPLVSRLA-LYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALE--DSDVV  100 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~-~la~~L~~~g~~~ev~-l~D~~~~~~~--~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aD~V  100 (209)
                      ++.||+|+|+ |.+|. +++..+...+.+ +|+ ++|+++....  ..++. .. ...+..   .+|+++.++  +.|+|
T Consensus        32 ~~iriaiIG~-G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~-i~-~~~~~~---~~d~~ell~~~~iD~V  104 (221)
T d1h6da1          32 RRFGYAIVGL-GKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYG-VD-PRKIYD---YSNFDKIAKDPKIDAV  104 (221)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTT-CC-GGGEEC---SSSGGGGGGCTTCCEE
T ss_pred             CCEEEEEEcC-cHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhc-cc-cccccc---cCchhhhcccccceee
Confidence            3469999999 99997 455555544333 555 7788753221  12221 11 012222   245666664  68999


Q ss_pred             EEcC
Q 028437          101 IIPA  104 (209)
Q Consensus       101 i~~a  104 (209)
                      +++.
T Consensus       105 ~I~t  108 (221)
T d1h6da1         105 YIIL  108 (221)
T ss_dssp             EECS
T ss_pred             eecc
Confidence            9874

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.43  E-value=0.0063  Score=45.09  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=29.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ||+|||| |..|.+.|..|.+.|+ .+|++++...
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~-~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGI-TDLLILEATD   34 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTC-CCEEEECSSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCC-CcEEEEECCC
Confidence            7999999 9999999999999995 2699999854

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.43  E-value=0.14  Score=35.96  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=24.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ||+|+|++|.+|+.++..+.+...+.=+..+|+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~   34 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG   34 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            7999999999999999887765433223345553

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.39  E-value=0.034  Score=42.35  Aligned_cols=74  Identities=19%  Similarity=0.353  Sum_probs=47.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCCchhHHHhhcCCCCCcceeE-------e--------------ec
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAG-------Y--------------MG   86 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~-------~--------------~~   86 (209)
                      .||.|+|. |..|.+++..+.+.+. .-+.+.+|.|..     +|.....+.++..       .              ..
T Consensus        16 ~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~~-----~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~   89 (209)
T d2vapa1          16 AKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDAQ-----QLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKES   89 (209)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBHH-----HHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHHT
T ss_pred             CcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCHH-----HHhcCCcchhcccccccccccccccchHHHHHHHHHH
Confidence            59999999 9999999999988765 237888888631     1222111100000       0              00


Q ss_pred             CCchhhhcCCCCEEEEcCCCCC
Q 028437           87 NDQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        87 ~~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      .+.+.+.++++|.||++||...
T Consensus        90 ~~~I~~~l~~~d~vfi~AGlGG  111 (209)
T d2vapa1          90 AEEIKAAIQDSDMVFITCGLGG  111 (209)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTS
T ss_pred             HHHHHHhccCCCEEEEEEeCCC
Confidence            1145677899999999998753

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.38  E-value=0.014  Score=39.86  Aligned_cols=35  Identities=14%  Similarity=0.211  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +..+|+|+|+ |++|.-+|..|...|.  ++.++++.+
T Consensus        21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~--~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGG-SKTAVEYGCFFNATGR--RTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcch--hheEeeccc
Confidence            3469999999 9999999999999998  999999853

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=95.32  E-value=0.0076  Score=48.73  Aligned_cols=105  Identities=17%  Similarity=0.246  Sum_probs=60.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHH----hCCCc-----cEEEEEecCCc-hhHHHhhcCCCCCcceeEeecCCchhhhcCC--
Q 028437           29 RKVAVLGAAGGIGQPLALLMK----LNPLV-----SRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALED--   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~----~~g~~-----~ev~l~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~--   96 (209)
                      .||+|.|| |..|..++..|+    ..|+-     ++++++|++-+ .....|+...... ..+......++.+++++  
T Consensus        26 ~kivi~GA-GaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~-~a~~~~~~~~l~~~i~~~k  103 (308)
T d1o0sa1          26 EKYLFFGA-GAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQ-FAKDMPETTSILEVIRAAR  103 (308)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTT-TCBSSCCCCCHHHHHHHHC
T ss_pred             cEEEEECc-CHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHH-HHHhcccCCcHHHHHhccc
Confidence            49999999 999999877654    34542     36999999631 0001122111100 00000011245555543  


Q ss_pred             CCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      -+++|-+.+.+   |           -+.+++++.|.+.+++.+|+-.|||..
T Consensus       104 ptvliG~s~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPtp  142 (308)
T d1o0sa1         104 PGALIGASTVR---G-----------AFNEEVIRAMAEINERPIIFALSNPTS  142 (308)
T ss_dssp             CSEEEECSSCT---T-----------CSCHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             cccEEeccccc---C-----------CCCHHHHHHHHhhCCCcEEEEccCCCC
Confidence            35666665543   2           122566788888899998888999965

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.32  E-value=0.011  Score=43.43  Aligned_cols=71  Identities=18%  Similarity=0.343  Sum_probs=46.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh--HHHhhcCCCC---CcceeEeecCCchhhhcCCCCEEEE
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINT---RSEVAGYMGNDQLGQALEDSDVVII  102 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~--~~~dl~~~~~---~~~v~~~~~~~d~~~a~~~aD~Vi~  102 (209)
                      ..+|+|+|+ |.+++++++.|.+.+   +|++++|+..+.  ...++.....   ...+..    .+++..+.++|++|+
T Consensus        18 ~k~vlIlGa-GG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dliIn   89 (177)
T d1nvta1          18 DKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF----SGLDVDLDGVDIIIN   89 (177)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE----ECTTCCCTTCCEEEE
T ss_pred             CCEEEEECC-cHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhh----hhhhhccchhhhhcc
Confidence            358999999 999999998886554   999999975322  2223322111   111221    245566788999999


Q ss_pred             cCCC
Q 028437          103 PAGV  106 (209)
Q Consensus       103 ~ag~  106 (209)
                      +...
T Consensus        90 ~tp~   93 (177)
T d1nvta1          90 ATPI   93 (177)
T ss_dssp             CSCT
T ss_pred             CCcc
Confidence            8544

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.26  E-value=0.034  Score=40.96  Aligned_cols=79  Identities=19%  Similarity=0.184  Sum_probs=44.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhH-HHhhcCCCC----Ccce-----eEeecCCchhhhcCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHINT----RSEV-----AGYMGNDQLGQALEDS   97 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~-~~dl~~~~~----~~~v-----~~~~~~~d~~~a~~~a   97 (209)
                      ++||+|.|. |.||+.++..+.+++-+.-|.+-|..+.... .......+.    ....     ..+....++.+..+++
T Consensus         2 ~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (172)
T d2czca2           2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV   80 (172)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred             cEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccC
Confidence            469999999 9999999998887664433334444332111 110001110    0000     0011123566778899


Q ss_pred             CEEEEcCCCC
Q 028437           98 DVVIIPAGVP  107 (209)
Q Consensus        98 D~Vi~~ag~~  107 (209)
                      |+|+.|.|..
T Consensus        81 DvViEcTG~f   90 (172)
T d2czca2          81 DIIVDATPGG   90 (172)
T ss_dssp             SEEEECCSTT
T ss_pred             CEEEECCCCC
Confidence            9999997653

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=95.24  E-value=0.013  Score=47.15  Aligned_cols=105  Identities=18%  Similarity=0.217  Sum_probs=61.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHH----hCCC-----ccEEEEEecCCc-hhHHHhhcCCCCCcceeEeecCCchhhhcC--C
Q 028437           29 RKVAVLGAAGGIGQPLALLMK----LNPL-----VSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALE--D   96 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~----~~g~-----~~ev~l~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~   96 (209)
                      .||++.|| |..|..++..|.    +.|+     ..+++++|++-. .....++.+.... .........++++.++  .
T Consensus        26 ~kiV~~GA-GsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~~-~a~~~~~~~~l~~~i~~vk  103 (298)
T d1gq2a1          26 HTVLFQGA-GEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEH-FAHEHCEMKNLEDIVKDIK  103 (298)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGG-GCBSCCCCCCHHHHHHHHC
T ss_pred             cEEEEECc-cHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHHH-HHHHhhhhhhhHHHhhccC
Confidence            49999999 999999877664    3343     248999999631 0011122211100 0000001124455554  3


Q ss_pred             CCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus        97 aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      .+++|-+.+.+   |           -+.+++++.|.+.+++.+|+-.|||..
T Consensus       104 ptvliG~s~~~---g-----------~ft~evv~~ma~~~~~PIIFaLSNPt~  142 (298)
T d1gq2a1         104 PTVLIGVAAIG---G-----------AFTQQILQDMAAFNKRPIIFALSNPTS  142 (298)
T ss_dssp             CSEEEECSCCT---T-----------CSCHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             hheeEeccccc---C-----------cCCHHHHHHHHhhCCCCEEEEccCCCC
Confidence            56777776554   2           122566778888899999988999964

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.23  E-value=0.081  Score=38.59  Aligned_cols=67  Identities=19%  Similarity=0.208  Sum_probs=39.8

Q ss_pred             CCeEEEEcCCCchHHHH-HHHHHhCCCccEEE-EEecCCchhH--HHhhcCCCCCcceeEeecCCchhhhcC--CCCEEE
Q 028437           28 DRKVAVLGAAGGIGQPL-ALLMKLNPLVSRLA-LYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALE--DSDVVI  101 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~l-a~~L~~~g~~~ev~-l~D~~~~~~~--~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aD~Vi  101 (209)
                      ++||+|+|+ |.+|... +..+...+..-+|+ ++|+++....  ..++...      ..+   +++++.++  +.|+|+
T Consensus         3 kirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~------~~~---~~~~ell~~~~id~v~   72 (181)
T d1zh8a1           3 KIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNP------AVF---DSYEELLESGLVDAVD   72 (181)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSC------EEE---SCHHHHHHSSCCSEEE
T ss_pred             CcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccccc------cee---eeeeccccccccceee
Confidence            479999999 9999874 56665543322555 6677653221  1222211      112   36677664  689999


Q ss_pred             EcC
Q 028437          102 IPA  104 (209)
Q Consensus       102 ~~a  104 (209)
                      ++.
T Consensus        73 I~t   75 (181)
T d1zh8a1          73 LTL   75 (181)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            874

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.18  E-value=0.15  Score=37.02  Aligned_cols=99  Identities=17%  Similarity=0.232  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCc-hh---h--hcCCCCE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQ-LG---Q--ALEDSDV   99 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d-~~---~--a~~~aD~   99 (209)
                      +...|+|+|+ |.+|...+..+...|. .+|+.+|.++.+ ..+.++.....   +. ....++ .+   +  .=.++|+
T Consensus        29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~GA~~~---in-~~~~~~~~~~~~~~~~g~G~d~  102 (176)
T d1d1ta2          29 PGSTCVVFGL-GGVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAVGATEC---IS-PKDSTKPISEVLSEMTGNNVGY  102 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHHTCSEE---EC-GGGCSSCHHHHHHHHHTSCCCE
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhcCCcEE---EC-ccccchHHHHHHHHhccccceE
Confidence            3458999999 9999999998888884 389999997532 23334433221   10 000111 11   1  1258999


Q ss_pred             EEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCCC
Q 028437          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVN  149 (209)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p-~~~viv~snP~~  149 (209)
                      ||.+.|.+                  ..+...+....+ .+++++++.|..
T Consensus       103 vi~~~g~~------------------~~~~~a~~~~~~~~G~~v~vG~~~~  135 (176)
T d1d1ta2         103 TFEVIGHL------------------ETMIDALASCHMNYGTSVVVGVPPS  135 (176)
T ss_dssp             EEECSCCH------------------HHHHHHHTTSCTTTCEEEECSCCCT
T ss_pred             EEEeCCch------------------HHHHHHHHHhhcCCeEEEEEEcccc
Confidence            99997643                  111122333333 478999987754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.16  E-value=0.014  Score=40.76  Aligned_cols=40  Identities=18%  Similarity=0.213  Sum_probs=34.2

Q ss_pred             ccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        21 ~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      .++..+.+.+++|+|+ |++|.-+|..+...|.  +|+++++.
T Consensus        19 ~l~l~~~p~~vvIiGg-G~IG~E~A~~~~~~G~--~Vtive~~   58 (125)
T d1ojta2          19 ALALKEVPGKLLIIGG-GIIGLEMGTVYSTLGS--RLDVVEMM   58 (125)
T ss_dssp             HTTCCCCCSEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSS
T ss_pred             hhCccccCCeEEEECC-CHHHHHHHHHhhcCCC--EEEEEEee
Confidence            3444555679999999 9999999999999998  99999885

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.16  E-value=0.07  Score=38.85  Aligned_cols=76  Identities=21%  Similarity=0.240  Sum_probs=46.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCc-hhhhc-----CCC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQ-LGQAL-----EDS   97 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d-~~~a~-----~~a   97 (209)
                      .++-.+|+|+|+ |.+|...++.+...|. .+|+..|+++.+ ..+.++....   .+ .....++ .++..     .+.
T Consensus        25 ~~~G~~VlV~Ga-GgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~lGa~~---~i-~~~~~d~~~~~~~~~~~~~G~   98 (174)
T d1p0fa2          25 VTPGSTCAVFGL-GGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIELGATE---CL-NPKDYDKPIYEVICEKTNGGV   98 (174)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHTTCSE---EE-CGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCCEEEEECC-CchhHHHHHHHHHcCC-ceeeccCChHHHHHHHHHcCCcE---EE-cCCCchhHHHHHHHHhcCCCC
Confidence            344468999998 9999999988888774 489999997532 2333333221   11 0110111 12221     478


Q ss_pred             CEEEEcCCC
Q 028437           98 DVVIIPAGV  106 (209)
Q Consensus        98 D~Vi~~ag~  106 (209)
                      |+||.++|.
T Consensus        99 d~vid~~g~  107 (174)
T d1p0fa2          99 DYAVECAGR  107 (174)
T ss_dssp             SEEEECSCC
T ss_pred             cEEEEcCCC
Confidence            999999764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.12  E-value=0.035  Score=40.40  Aligned_cols=97  Identities=20%  Similarity=0.299  Sum_probs=56.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCcceeEeecCCchhhhc-----CCCCE
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQAL-----EDSDV   99 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a~-----~~aD~   99 (209)
                      ++..+|+|+|+ |.+|...++.+...|. ..|+..|.++. ...+.++....    +-.. ..+++.+.+     .+.|+
T Consensus        27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~Ga~~----~i~~-~~~~~~~~i~~~t~gg~D~   99 (174)
T d1f8fa2          27 TPASSFVTWGA-GAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGATH----VINS-KTQDPVAAIKEITDGGVNF   99 (174)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTCSE----EEET-TTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCEEEEeCC-CHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcCCeE----EEeC-CCcCHHHHHHHHcCCCCcE
Confidence            34458999999 9999999988877775 26677787642 22333443221    1111 122333332     24899


Q ss_pred             EEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 028437          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (209)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP  147 (209)
                      ||.++|.+               .....   .++-..|.+++++++.|
T Consensus       100 vid~~G~~---------------~~~~~---~~~~~~~~G~i~~~G~~  129 (174)
T d1f8fa2         100 ALESTGSP---------------EILKQ---GVDALGILGKIAVVGAP  129 (174)
T ss_dssp             EEECSCCH---------------HHHHH---HHHTEEEEEEEEECCCC
T ss_pred             EEEcCCcH---------------HHHHH---HHhcccCceEEEEEeec
Confidence            99998643               11111   22223478888888754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.0084  Score=46.43  Aligned_cols=34  Identities=24%  Similarity=0.483  Sum_probs=31.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .||+|+|+ |.+|+.++..|+..|. ++++++|.|.
T Consensus        31 ~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   64 (247)
T d1jw9b_          31 SRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   64 (247)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence            49999999 9999999999999996 6999999873

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.06  E-value=0.039  Score=41.66  Aligned_cols=35  Identities=29%  Similarity=0.310  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +-.+|+|-|- |.||+.++..|.+.|.  .|+..|.+.
T Consensus        26 ~gk~v~IqG~-G~VG~~~A~~L~~~Ga--kvvv~d~d~   60 (201)
T d1c1da1          26 DGLTVLVQGL-GAVGGSLASLAAEAGA--QLLVADTDT   60 (201)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEecchH
Confidence            3358999998 9999999999999998  999999974

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.00  E-value=0.16  Score=35.20  Aligned_cols=41  Identities=17%  Similarity=0.155  Sum_probs=30.8

Q ss_pred             cCCCCCCCeEEEEcCC---CchHHHHHHHHHhCCCccEEEEEecC
Q 028437           22 SSESVPDRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        22 ~~~~~~~~kI~IiGas---G~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ++..-++.+|+|+|||   |..|..+...|.+.+ -++|+.+...
T Consensus         2 L~~lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~   45 (129)
T d2csua1           2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIK   45 (129)
T ss_dssp             CCTTTSCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSS
T ss_pred             hhHhCCCCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccC
Confidence            3344456799999998   888988888887655 3488888653

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.98  E-value=0.016  Score=41.74  Aligned_cols=117  Identities=15%  Similarity=0.201  Sum_probs=65.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCc----hhhhcCCCCEEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQ----LGQALEDSDVVI  101 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d----~~~a~~~aD~Vi  101 (209)
                      +..+|+|.|+ |.+|...+..+...|.  +|+..|.++.+ ....++...    .+... ..++    +.+...+.|.+|
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~--~v~~~~~~~~r~~~~k~~Ga~----~~~~~-~~~~~~~~~~~~~~~~~~~v   98 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAKAMGL--NVVAVDIGDEKLELAKELGAD----LVVNP-LKEDAAKFMKEKVGGVHAAV   98 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTTCS----EEECT-TTSCHHHHHHHHHSSEEEEE
T ss_pred             CCCEEEEeec-ccchhhhhHHHhcCCC--eEeccCCCHHHhhhhhhcCcc----eeccc-ccchhhhhcccccCCCceEE
Confidence            4458999998 9999998888888888  89999886532 122222211    11111 0112    233346677788


Q ss_pred             EcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe
Q 028437          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (209)
Q Consensus       102 ~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~  174 (209)
                      .+++.+               ..+....+.   ..|.+++++++.|.+....-....+.+     ..+++|..
T Consensus        99 ~~~~~~---------------~~~~~a~~~---l~~~G~i~~~g~~~~~~~~~~~~~~~~-----~~~i~gs~  148 (168)
T d1rjwa2          99 VTAVSK---------------PAFQSAYNS---IRRGGACVLVGLPPEEMPIPIFDTVLN-----GIKIIGSI  148 (168)
T ss_dssp             ESSCCH---------------HHHHHHHHH---EEEEEEEEECCCCSSEEEEEHHHHHHT-----TCEEEECC
T ss_pred             eecCCH---------------HHHHHHHHH---hccCCceEecccccCCCCCCHHHHHHC-----CcEEEEEe
Confidence            776422               111222222   347888888877655433222223322     34678774

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.97  E-value=0.0099  Score=48.22  Aligned_cols=91  Identities=13%  Similarity=0.099  Sum_probs=55.8

Q ss_pred             hhhhhccccccccccccCCCCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc--hhHHHhhcCCCCCcceeE
Q 028437            6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAG   83 (209)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~--~~~~~dl~~~~~~~~v~~   83 (209)
                      |-..+|-|-.+-+-+++.+. ....++|+|+ |..+...+..+...-.+.+|.++++++.  +....++.+...  .+. 
T Consensus       104 lT~~RTaA~sala~~~la~~-~~~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~--~~~-  178 (320)
T d1omoa_         104 TTSLRTGAAGGIAAKYLARK-NSSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGI--SAS-  178 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHSCT-TCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTC--CEE-
T ss_pred             cccccchhHHHHHHHHhccC-CccEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCC--ccc-
Confidence            33444544444444455442 3458999999 9999987776665333679999999753  223334443321  111 


Q ss_pred             eecCCchhhhcCCCCEEEEcCC
Q 028437           84 YMGNDQLGQALEDSDVVIIPAG  105 (209)
Q Consensus        84 ~~~~~d~~~a~~~aD~Vi~~ag  105 (209)
                          .+.++++++||+|+.+..
T Consensus       179 ----~~~~~a~~~aDiV~taT~  196 (320)
T d1omoa_         179 ----VQPAEEASRCDVLVTTTP  196 (320)
T ss_dssp             ----ECCHHHHTSSSEEEECCC
T ss_pred             ----cchhhhhccccEEEEecc
Confidence                123678899999988743

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.0094  Score=47.47  Aligned_cols=34  Identities=18%  Similarity=0.153  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      |.+|+|||| |..|..+|..|.+.|+  +|.+++.+.
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~--~V~iiEk~~   34 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNK--KVLVIEKRN   34 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTC--CEEEECSSS
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCC--cEEEEECCC
Confidence            458999999 9999999999999998  999999864

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.91  E-value=0.0075  Score=45.48  Aligned_cols=36  Identities=11%  Similarity=0.083  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCc-----cEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~-----~ev~l~D~~~   64 (209)
                      |.||+|||| |-.|.+.|..|.+.|+-     -+|.++|..+
T Consensus         2 p~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           2 PYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            569999999 99999999999888741     2799999864

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.90  E-value=0.045  Score=40.02  Aligned_cols=37  Identities=22%  Similarity=0.231  Sum_probs=31.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ++-.+|+|.||+|.+|...++.+...|.  +|+..++++
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga--~vi~~~~~~   64 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGC--KVVGAAGSD   64 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSH
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCC--EEEEeCCCH
Confidence            3446899999999999999999999998  999888754

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.88  E-value=0.014  Score=42.94  Aligned_cols=36  Identities=25%  Similarity=0.249  Sum_probs=31.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ...--|+|||| |..|...|..|++.|+  +|.+++.++
T Consensus         3 ~~~yDviViGa-G~~Gl~~A~~La~~G~--~V~vlE~~~   38 (297)
T d2bcgg1           3 DTDYDVIVLGT-GITECILSGLLSVDGK--KVLHIDKQD   38 (297)
T ss_dssp             CCBCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCcCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEcCCC
Confidence            33346899999 9999999999999999  999999964

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.80  E-value=0.011  Score=46.36  Aligned_cols=33  Identities=21%  Similarity=0.384  Sum_probs=29.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +|+|||| |-+|.++|..|+++|. .+|+++|++.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~-~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGW-NNITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence            7999999 9999999999999984 2799999863

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.58  E-value=0.079  Score=37.47  Aligned_cols=32  Identities=16%  Similarity=0.333  Sum_probs=29.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ++|+|+|| |.+|..-+..|++.|-  +|++++.+
T Consensus        14 krvLViGg-G~va~~ka~~Ll~~GA--~VtVvap~   45 (150)
T d1kyqa1          14 KRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSPD   45 (150)
T ss_dssp             CEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            59999999 9999999999999998  99999764

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=94.56  E-value=0.015  Score=45.03  Aligned_cols=31  Identities=26%  Similarity=0.392  Sum_probs=29.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      -|+|||| |.+|..+|..|+++|+  +|+++|+.
T Consensus         5 DvvIIGa-Gi~Gls~A~~La~~G~--~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGA-GSMGMAAGYQLAKQGV--KTLLVDAF   35 (281)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCC
Confidence            3899999 9999999999999999  99999985

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.52  E-value=0.1  Score=37.41  Aligned_cols=37  Identities=24%  Similarity=0.421  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +..+|+|+|++|.+|...+..+...|. .+|+..|+++
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~   63 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVRE   63 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSH
T ss_pred             CCCEEEEEeccccceeeeeeccccccc-ccccccccch
Confidence            445899999889999988888777774 3899999875

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.42  E-value=0.034  Score=41.95  Aligned_cols=75  Identities=21%  Similarity=0.247  Sum_probs=46.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCCchhHHHhhcCCCC----------------Cccee---EeecCCc
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINT----------------RSEVA---GYMGNDQ   89 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~~~~~~~dl~~~~~----------------~~~v~---~~~~~~d   89 (209)
                      +|-|+|- |..|.+++..+.+.+. .-+.+.+|.|..   .+.......                .+.+-   .....+.
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~~---~L~~~~~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~~~   78 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDAQ---ALLMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAKDE   78 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCHH---HHHHCCCSEEEECCTTTC-----CCCHHHHHHHHHHTHHH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchHH---HHhcCCcchhhccccccccCCCcCcChhhhHhhHHHHHHH
Confidence            6789999 9999999999998875 238888888631   111111100                00000   0001124


Q ss_pred             hhhhcCCCCEEEEcCCCCC
Q 028437           90 LGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        90 ~~~a~~~aD~Vi~~ag~~~  108 (209)
                      +.++++++|+||++||...
T Consensus        79 I~~~l~~~d~vfi~AGlGG   97 (198)
T d1rq2a1          79 IEELLRGADMVFVTAGEGG   97 (198)
T ss_dssp             HHHHHTTCSEEEEEEETTS
T ss_pred             HHHHhcCCCEEEEEEecCC
Confidence            6778999999999998764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=94.38  E-value=0.019  Score=45.81  Aligned_cols=33  Identities=21%  Similarity=0.172  Sum_probs=30.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ...|+|||| |..|...+..|.+.|+  +++++|..
T Consensus         7 ~~dV~IIGA-G~sGl~~a~~L~~~G~--~v~i~Ek~   39 (298)
T d1w4xa1           7 EVDVLVVGA-GFSGLYALYRLRELGR--SVHVIETA   39 (298)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSS
T ss_pred             CCCEEEECc-cHHHHHHHHHHHhCCC--CEEEEEcC
Confidence            358999999 9999999999999999  99999974

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.35  E-value=0.017  Score=43.51  Aligned_cols=32  Identities=19%  Similarity=0.298  Sum_probs=28.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhC--CCccEEEEEecCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIAN   64 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~--g~~~ev~l~D~~~   64 (209)
                      ||+|||| |-.|.+.|..|.+.  |+  +|+++|..+
T Consensus         3 kv~iIGa-GpaGl~aA~~L~~~~~~~--~V~v~e~~~   36 (230)
T d1cjca2           3 QICVVGS-GPAGFYTAQHLLKHHSRA--HVDIYEKQL   36 (230)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCSSC--EEEEECSSS
T ss_pred             eEEEECc-cHHHHHHHHHHHhcCCCC--eEEEEeCCC
Confidence            9999999 99999999988765  66  999999864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.32  E-value=0.1  Score=38.68  Aligned_cols=76  Identities=21%  Similarity=0.214  Sum_probs=45.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCchhhhc------CCC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQAL------EDS   97 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~a   97 (209)
                      .++-.+|+|+|+ |.+|...+..+...|. ..|+.+|.++.+ ..+.++....     ......+++.+.+      .++
T Consensus        23 v~~G~tVlV~Ga-G~vGl~a~~~ak~~ga-~~Vi~~d~~~~rl~~a~~~Ga~~-----~~~~~~~~~~~~i~~~t~g~g~   95 (195)
T d1kola2          23 VGPGSTVYVAGA-GPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQGFEI-----ADLSLDTPLHEQIAALLGEPEV   95 (195)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTTCEE-----EETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHhhcc-cceeeecccchhhHhhhhccccE-----EEeCCCcCHHHHHHHHhCCCCc
Confidence            345569999998 9999877777766664 489999997532 1222222111     1100112332222      368


Q ss_pred             CEEEEcCCCC
Q 028437           98 DVVIIPAGVP  107 (209)
Q Consensus        98 D~Vi~~ag~~  107 (209)
                      |++|.+.|.+
T Consensus        96 D~vid~vG~~  105 (195)
T d1kola2          96 DCAVDAVGFE  105 (195)
T ss_dssp             EEEEECCCTT
T ss_pred             EEEEECcccc
Confidence            9999998854

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.31  E-value=0.034  Score=40.33  Aligned_cols=73  Identities=25%  Similarity=0.247  Sum_probs=46.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCchhhhc------CCCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQAL------EDSD   98 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~aD   98 (209)
                      ++..+|+|+||+|.+|...++.+...|.  +|+..++++.+ ....++..   + .+-.. ..+|+.+.+      ++.|
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga--~Vi~~~~s~~k~~~~~~lGa---~-~vi~~-~~~d~~~~v~~~t~g~g~d   99 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKAGA---W-QVINY-REEDLVERLKEITGGKKVR   99 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHTC---S-EEEET-TTSCHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEEccccccchHHHHHHHHhCC--eEeecccchHHHHHHHhcCC---e-EEEEC-CCCCHHHHHHHHhCCCCeE
Confidence            3445999999989999999999888898  99999887532 22233321   1 11111 123444433      3578


Q ss_pred             EEEEcCC
Q 028437           99 VVIIPAG  105 (209)
Q Consensus        99 ~Vi~~ag  105 (209)
                      +|+.++|
T Consensus       100 ~v~d~~g  106 (179)
T d1qora2         100 VVYDSVG  106 (179)
T ss_dssp             EEEECSC
T ss_pred             EEEeCcc
Confidence            8888865

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.061  Score=38.91  Aligned_cols=97  Identities=15%  Similarity=0.136  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCchhhhc------CCCCE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQAL------EDSDV   99 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~aD~   99 (209)
                      +..+|+|+||+|.+|...++.+...|.  +++..+.++.+ ..+.++.   .+ .+-... ..|+.+.+      ++.|+
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~--~vi~~~~~~~~~~~~~~~G---a~-~vi~~~-~~~~~~~i~~~t~~~g~d~  100 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGL--KILGTAGTEEGQKIVLQNG---AH-EVFNHR-EVNYIDKIKKYVGEKGIDI  100 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTT---CS-EEEETT-STTHHHHHHHHHCTTCEEE
T ss_pred             CCCEEEEEeccccccccccccccccCc--ccccccccccccccccccC---cc-cccccc-cccHHHHhhhhhccCCceE
Confidence            445899999989999999998988998  88888775421 1222222   11 111111 22333332      35799


Q ss_pred             EEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      |+.++|.                +...+..+.+   .|.++++.++++..
T Consensus       101 v~d~~g~----------------~~~~~~~~~l---~~~G~iv~~G~~~~  131 (174)
T d1yb5a2         101 IIEMLAN----------------VNLSKDLSLL---SHGGRVIVVGSRGT  131 (174)
T ss_dssp             EEESCHH----------------HHHHHHHHHE---EEEEEEEECCCCSC
T ss_pred             EeecccH----------------HHHHHHHhcc---CCCCEEEEEecCCC
Confidence            9987531                1122333333   46788998876644

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=94.11  E-value=0.092  Score=38.43  Aligned_cols=77  Identities=16%  Similarity=0.116  Sum_probs=43.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEe-cCCchhHHH-hhcCCCC----Cccee-----EeecCCchhhhcCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IANTPGVAA-DVGHINT----RSEVA-----GYMGNDQLGQALED   96 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D-~~~~~~~~~-dl~~~~~----~~~v~-----~~~~~~d~~~a~~~   96 (209)
                      |.||+|-|- |.||+.++..+..++.+ +++.+. ..+...... -..+...    .....     .+....++.+++++
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di-~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~   78 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDM-KVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDE   78 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSE-EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHT
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCc-eEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcC
Confidence            569999998 99999999988777643 555544 333211111 0111110    00000     00011245667789


Q ss_pred             CCEEEEcCCC
Q 028437           97 SDVVIIPAGV  106 (209)
Q Consensus        97 aD~Vi~~ag~  106 (209)
                      +|+|+.|.|.
T Consensus        79 vDvViEcTG~   88 (171)
T d1cf2o1          79 ADIVIDCTPE   88 (171)
T ss_dssp             CSEEEECCST
T ss_pred             CCEEEEccCC
Confidence            9999999764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=93.83  E-value=0.046  Score=37.09  Aligned_cols=37  Identities=14%  Similarity=0.107  Sum_probs=28.8

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHh---CCCccEEEEEecC
Q 028437           24 ESVPDRKVAVLGAAGGIGQPLALLMKL---NPLVSRLALYDIA   63 (209)
Q Consensus        24 ~~~~~~kI~IiGasG~vG~~la~~L~~---~g~~~ev~l~D~~   63 (209)
                      ....|.+|+|+|| |++|.-++..+..   .|.  +|.++.+.
T Consensus        14 l~~~p~~v~IiGg-G~ig~E~A~~l~~~~~~g~--~Vtli~~~   53 (117)
T d1feca2          14 LDEAPKRALCVGG-GYISIEFAGIFNAYKARGG--QVDLAYRG   53 (117)
T ss_dssp             CSSCCSEEEEECS-SHHHHHHHHHHHHHSCTTC--EEEEEESS
T ss_pred             ccccCCeEEEECC-ChHHHHHHHHhHhhccccc--ccceeccc
Confidence            3344569999999 9999999876544   355  99999885

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.77  E-value=0.032  Score=39.68  Aligned_cols=30  Identities=27%  Similarity=0.362  Sum_probs=26.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ||+|+|| |++|..++..|.+ +.  +|.++++.
T Consensus         2 rVvIIGg-G~~G~e~A~~l~~-~~--~Vtvv~~~   31 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLSQ-TY--EVTVIDKE   31 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TS--EEEEECSS
T ss_pred             eEEEECC-cHHHHHHHHHHHc-CC--CEEEEecc
Confidence            8999999 9999999998864 55  99999874

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.74  E-value=0.21  Score=35.77  Aligned_cols=118  Identities=18%  Similarity=0.207  Sum_probs=63.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCCCcceeEeecCCchhhhc-----CCCCE
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQAL-----EDSDV   99 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~a~-----~~aD~   99 (209)
                      ++...|+|+|+ |.+|...+..+...|. ..|+..|.++.+. ...++...    .+-.. ..++.++..     ++.|+
T Consensus        31 ~~g~~vli~Ga-G~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~~ga~----~~i~~-~~~~~~~~~~~~~~~g~d~  103 (172)
T d1h2ba2          31 YPGAYVAIVGV-GGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAERLGAD----HVVDA-RRDPVKQVMELTRGRGVNV  103 (172)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHTTCS----EEEET-TSCHHHHHHHHTTTCCEEE
T ss_pred             CCCCEEEEeCC-ChHHHHHHHHHHhhcC-cccccccchhHHHHHHhhcccc----eeecC-cccHHHHHHHhhCCCCceE
Confidence            34458999998 9999998887776664 2778888864221 22222211    11111 011222222     36899


Q ss_pred             EEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe
Q 028437          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (209)
Q Consensus       100 Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~  174 (209)
                      ||.++|.+.            .      +-..+.-..+.+++++++.+.+..... ..++.+     .-+++|+.
T Consensus       104 vid~~g~~~------------~------~~~a~~~l~~~G~iv~~G~~~~~~~~~-~~l~~k-----~~~i~Gs~  154 (172)
T d1h2ba2         104 AMDFVGSQA------------T------VDYTPYLLGRMGRLIIVGYGGELRFPT-IRVISS-----EVSFEGSL  154 (172)
T ss_dssp             EEESSCCHH------------H------HHHGGGGEEEEEEEEECCCSSCCCCCH-HHHHHT-----TCEEEECC
T ss_pred             EEEecCcch------------H------HHHHHHHHhCCCEEEEEeCcccccCCH-HHHHhC-----CcEEEEEE
Confidence            999976420            1      111222234778888887654433322 223322     34678874

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=93.67  E-value=0.021  Score=43.89  Aligned_cols=35  Identities=17%  Similarity=0.206  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +...|+|||| |..|...|..|.+.|+  +|.++|+.+
T Consensus         3 ~~~DViIIGa-G~aGl~aA~~la~~G~--~V~vlEk~~   37 (253)
T d2gqfa1           3 QYSENIIIGA-GAAGLFCAAQLAKLGK--SVTVFDNGK   37 (253)
T ss_dssp             EECSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCCcEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            3347999999 9999999999999999  999999865

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.03  Score=43.69  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=28.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      |+|||| |..|...|..|.+.|+  +|++++...
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~--~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGL--NVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            799999 9999999999999999  999999753

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.50  E-value=0.059  Score=36.58  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=28.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHh---CCCccEEEEEecC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKL---NPLVSRLALYDIA   63 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~---~g~~~ev~l~D~~   63 (209)
                      ...+.+|+|+|| |++|.-+|..+..   ++.  +|+++++.
T Consensus        17 ~~~p~~v~ivGg-G~ig~E~A~~l~~l~~~~~--~Vtli~~~   55 (117)
T d1aoga2          17 PEPPRRVLTVGG-GFISVEFAGIFNAYKPKDG--QVTLCYRG   55 (117)
T ss_dssp             SSCCSEEEEECS-SHHHHHHHHHHHHHCCTTC--EEEEEESS
T ss_pred             hhcCCeEEEECC-cHHHHHHHHHhhhcccCCc--EEEEEecc
Confidence            334569999999 9999999866554   445  89999885

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=93.38  E-value=0.036  Score=41.92  Aligned_cols=32  Identities=28%  Similarity=0.291  Sum_probs=29.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      -|+|||| |..|...|..|.+.|+  +|.++|+.+
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~--~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGA--NVLLLDKGN   35 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            5899999 9999999999999999  999999864

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.34  E-value=0.12  Score=38.82  Aligned_cols=73  Identities=21%  Similarity=0.315  Sum_probs=47.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCc-cEEEEEecCCchhHHHhhcCCCCCcceeE---------------------eecC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLV-SRLALYDIANTPGVAADVGHINTRSEVAG---------------------YMGN   87 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~-~ev~l~D~~~~~~~~~dl~~~~~~~~v~~---------------------~~~~   87 (209)
                      +|.|+|- |..|.+++..+.+.++- -+++.+|.|..     +|.....+.++..                     ....
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD~~-----~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~   76 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTDAQ-----ALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDR   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESBTG-----GGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTH
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCcHH-----HHhcCCccceeccccccccCCCCCCChHHHHHHHHHHH
Confidence            6889999 99999999999888752 28888888741     1111111000000                     0001


Q ss_pred             CchhhhcCCCCEEEEcCCCCC
Q 028437           88 DQLGQALEDSDVVIIPAGVPR  108 (209)
Q Consensus        88 ~d~~~a~~~aD~Vi~~ag~~~  108 (209)
                      +.+.+.++++|.||++||...
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGG   97 (198)
T d1ofua1          77 ERISEVLEGADMVFITTGMGG   97 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTS
T ss_pred             HHHHHHhCCCCeEEEEecCCC
Confidence            235677899999999998764

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.20  E-value=0.15  Score=37.61  Aligned_cols=64  Identities=23%  Similarity=0.277  Sum_probs=44.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~a  104 (209)
                      ++|+|+|- |.-|.+-+..|...|+  +|++=-++....... -....    ++.    .+.+||.+.+|+|.++.
T Consensus        17 k~IaViGY-GsQG~AhAlNLrDSG~--~V~VGLr~gs~s~~~-A~~~G----f~v----~~~~eA~~~aDiim~L~   80 (182)
T d1np3a2          17 KKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSGSATVAK-AEAHG----LKV----ADVKTAVAAADVVMILT   80 (182)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTTCHHHHH-HHHTT----CEE----ECHHHHHHTCSEEEECS
T ss_pred             CEEEEEee-CcHhHHHHhhhhhcCC--CEEEEcCCCCccHHH-Hhhhc----ccc----ccHHHHhhhcCeeeeec
Confidence            58999999 9999999999999999  776655533222111 11111    111    24689999999999984

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.13  E-value=0.66  Score=31.28  Aligned_cols=32  Identities=19%  Similarity=0.241  Sum_probs=27.6

Q ss_pred             CeEEEEcCC---CchHHHHHHHHHhCCCccEEEEEec
Q 028437           29 RKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDI   62 (209)
Q Consensus        29 ~kI~IiGas---G~vG~~la~~L~~~g~~~ev~l~D~   62 (209)
                      ++|+|+|||   +..|..+...|++.|+  +|+.+..
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~--~V~pVnP   36 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNP   36 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECT
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCC--EEEEEcc
Confidence            479999987   6789999999999999  8888854

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=93.05  E-value=0.52  Score=35.73  Aligned_cols=71  Identities=15%  Similarity=0.123  Sum_probs=41.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC---cc-EEEEEec-C-CchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPL---VS-RLALYDI-A-NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~---~~-ev~l~D~-~-~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~V  100 (209)
                      .++||+|+|- |.-|.+-+..|...|+   .+ .|++-=+ . .....+.+-....  .....    .+.+||.+.||+|
T Consensus        43 g~KkIaViGY-GsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v--~~~~v----~~v~EAv~~ADiV  115 (226)
T d1qmga2          43 GIKQIGVIGW-GSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSE--ENGTL----GDMWETISGSDLV  115 (226)
T ss_dssp             TCSEEEEECC-SSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCG--GGTCE----EEHHHHHHTCSEE
T ss_pred             CCCEEEEEEe-ccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCcc--CCCcc----cCHHHHHhhCCEE
Confidence            3458999999 9999999999998552   00 3333322 2 1222222111110  01111    1357899999999


Q ss_pred             EEcC
Q 028437          101 IIPA  104 (209)
Q Consensus       101 i~~a  104 (209)
                      .++.
T Consensus       116 miLl  119 (226)
T d1qmga2         116 LLLI  119 (226)
T ss_dssp             EECS
T ss_pred             EEec
Confidence            9994

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.04  E-value=0.29  Score=35.08  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT   65 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~   65 (209)
                      .++-.+|+|+|+ |.+|...+..+...|. .+|+..|+++.
T Consensus        26 vk~GdtVlV~Ga-GG~G~~~~~~~~~~g~-~~Vi~~~~~~~   64 (176)
T d2jhfa2          26 VTQGSTCAVFGL-GGVGLSVIMGCKAAGA-ARIIGVDINKD   64 (176)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGG
T ss_pred             CCCCCEEEEECC-CCcHHHHHHHHHHcCC-ceEEeecCcHH
Confidence            444568999999 8899998888887763 38999998753

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=92.93  E-value=0.092  Score=33.31  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +..+|+|.||+|.||...++.+...|.  +|+.....+
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~--~Vi~~t~s~   66 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGY--QVVAVSGRE   66 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTC--CEEEEESCG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCC--eEEEEECCH
Confidence            446899999999999999998888998  888877654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.21  Score=36.46  Aligned_cols=94  Identities=17%  Similarity=0.135  Sum_probs=56.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchh-HHHhhcCCCCCcceeEeecCCchhhhcC--CCCEEEEcCCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aD~Vi~~ag~  106 (209)
                      .|+|.||+|.||...++.+...|.  +|+...+.+.+. ...++....    +..+. ..+..+.+.  ..|.|+-++|-
T Consensus        34 ~vlV~gasGGVG~~aiQlAk~~Ga--~Via~~~~~~k~~~~~~lGad~----vi~~~-~~~~~~~l~~~~~~~vvD~Vgg  106 (177)
T d1o89a2          34 EIVVTGASGGVGSTAVALLHKLGY--QVVAVSGRESTHEYLKSLGASR----VLPRD-EFAESRPLEKQVWAGAIDTVGD  106 (177)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTC--CEEEEESCGGGHHHHHHHTEEE----EEEGG-GSSSCCSSCCCCEEEEEESSCH
T ss_pred             cEEEEEccccchHHHHHHHHHcCC--CeEEEecchhHHHHHHhhcccc----ccccc-cHHHHHHHHhhcCCeeEEEcch
Confidence            799999999999999999999998  888888764322 222222211    11111 112222232  24777776531


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus       107 ~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                               +.          +.+.++...+.++++.+++..+
T Consensus       107 ---------~~----------~~~~l~~l~~~Griv~~G~~~~  130 (177)
T d1o89a2         107 ---------KV----------LAKVLAQMNYGGCVAACGLAGG  130 (177)
T ss_dssp             ---------HH----------HHHHHHTEEEEEEEEECCCTTC
T ss_pred             ---------HH----------HHHHHHHhccccceEeecccCC
Confidence                     11          2234444457889999977654

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=92.88  E-value=0.14  Score=39.70  Aligned_cols=113  Identities=20%  Similarity=0.216  Sum_probs=67.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEcCCCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~ag~~  107 (209)
                      ..||+++|-     ..++..+.+.+.  ++.++|+++..   .++.             ....++.+.+||+||+++.  
T Consensus       122 g~kV~vIG~-----~P~v~~l~~~~~--~~~VlE~~p~~---gd~p-------------~~~~~~lLp~aD~viiTGs--  176 (251)
T d2h1qa1         122 GKKVGVVGH-----FPHLESLLEPIC--DLSILEWSPEE---GDYP-------------LPASEFILPECDYVYITCA--  176 (251)
T ss_dssp             TSEEEEESC-----CTTHHHHHTTTS--EEEEEESSCCT---TCEE-------------GGGHHHHGGGCSEEEEETH--
T ss_pred             CCEEEEEec-----chhHHHHHhcCC--cEEEEeCCCCC---CCCC-------------chHHHHhhhcCCEEEEEec--
Confidence            469999987     367777888887  99999997521   1111             1234678899999999951  


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEehhhHHHHHHHHHH
Q 028437          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAG  187 (209)
Q Consensus       108 ~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~~~~i~~~~~~~~~~~p~~~vig~~~lds~r~~~~la~  187 (209)
                              .+...++       +.+-++++++..+++..|.....+   .++ ++   .-+.+=|+-..|..++.+.+++
T Consensus       177 --------TlvN~Tl-------~~LL~~~~~a~~vvl~GPS~p~~P---~lf-~~---Gv~~lag~~v~d~~~~~~~i~~  234 (251)
T d2h1qa1         177 --------SVVDKTL-------PRLLELSRNARRITLVGPGTPLAP---VLF-EH---GLQELSGFMVKDNARAFRIVAG  234 (251)
T ss_dssp             --------HHHHTCH-------HHHHHHTTTSSEEEEESTTCCCCG---GGG-GT---TCSEEEEEEESCHHHHHHHHTT
T ss_pred             --------hhhcCCH-------HHHHHhCCcCCEEEEECCCcccCH---HHH-hc---CCceEeEEEEeCHHHHHHHHHc
Confidence                    2222233       344445666644555557665443   222 32   2333444445777777777754

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=92.78  E-value=0.1  Score=37.35  Aligned_cols=62  Identities=16%  Similarity=0.185  Sum_probs=43.2

Q ss_pred             CCeEEEEcC--CCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           28 DRKVAVLGA--AGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGa--sG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      ..||+++|=  .+.+..+++..+..-|.  ++++........     ..    ..+..   ..+++++++++|+|...
T Consensus         3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~--~~~i~~P~~~~~-----~~----~~~~~---~~~~~ea~~~aDviy~~   66 (151)
T d2at2a2           3 GLTVSIHGDIKHSRVARSNAEVLTRLGA--RVLFSGPSEWQD-----EE----NTFGT---YVSMDEAVESSDVVMLL   66 (151)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHcCC--cccccCCchhhc-----cc----cceeE---EEechhccccCceeeee
Confidence            469999997  56699999998888888  888776532110     01    12222   23678999999999876

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.71  E-value=0.033  Score=38.74  Aligned_cols=36  Identities=17%  Similarity=0.327  Sum_probs=27.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +.+|+|+|| |..|..++..+.......-+.++|.++
T Consensus         3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            458999999 999999988765543344566777765

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=92.70  E-value=0.32  Score=33.91  Aligned_cols=33  Identities=18%  Similarity=0.223  Sum_probs=27.8

Q ss_pred             CeEEEEcCC---CchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGas---G~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      .+|+|+|||   +..|..++..|.+.|+  .++.+..+
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~--~~~~v~~~   49 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQGY--RVLPVNPR   49 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTC--EEEEECGG
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcCCC--CceEEEec
Confidence            489999997   4678889999999999  88888653

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.51  Score=40.31  Aligned_cols=33  Identities=15%  Similarity=0.246  Sum_probs=30.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ||+|+|+ |.+|..++..|+..|. ++++++|.+.
T Consensus        27 ~VlvvG~-gglG~Ei~knLvl~GV-g~itivD~d~   59 (529)
T d1yova1          27 HVCLINA-TATGTEILKNLVLPGI-GSFTIIDGNQ   59 (529)
T ss_dssp             EEEECCC-SHHHHHHHHHHHTTTC-SEEEEECCSB
T ss_pred             CEEEECC-CHHHHHHHHHHHHhcC-CEEEEEcCCc
Confidence            9999999 9999999999999996 6999999863

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=92.51  E-value=0.085  Score=38.33  Aligned_cols=96  Identities=17%  Similarity=0.163  Sum_probs=57.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeec--CCchh-hhcCCCCEEEEcCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMG--NDQLG-QALEDSDVVIIPAG  105 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~--~~d~~-~a~~~aD~Vi~~ag  105 (209)
                      .|+|.||+|.||...++.+...|.  +|+...+++.+ ....++....    +.....  ....+ ..=++.|+|+.+.|
T Consensus        26 ~VLV~gaaGgVG~~avQlAk~~Ga--~Viat~~s~~k~~~~~~lGad~----vi~~~~~~~~~~~~~~~~gvd~vid~vg   99 (167)
T d1tt7a2          26 SVLVTGATGGVGGIAVSMLNKRGY--DVVASTGNREAADYLKQLGASE----VISREDVYDGTLKALSKQQWQGAVDPVG   99 (167)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTC--CEEEEESSSSTHHHHHHHTCSE----EEEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred             EEEEeCCcchHHHHHHHHHHHcCC--ceEEEecCHHHHHHHHhhcccc----eEeccchhchhhhcccCCCceEEEecCc
Confidence            699999999999999999999998  88888775432 2233333221    111100  00110 11146788888864


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 028437          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (209)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~~  150 (209)
                      -         +          .+.+.++-..|.++++.+++..+.
T Consensus       100 g---------~----------~~~~~~~~l~~~G~iv~~G~~~g~  125 (167)
T d1tt7a2         100 G---------K----------QLASLLSKIQYGGSVAVSGLTGGG  125 (167)
T ss_dssp             T---------H----------HHHHHHTTEEEEEEEEECCCSSCS
T ss_pred             H---------H----------HHHHHHHHhccCceEEEeeccCCC
Confidence            2         1          122334444588899999877653

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=92.28  E-value=0.059  Score=42.41  Aligned_cols=32  Identities=25%  Similarity=0.379  Sum_probs=28.3

Q ss_pred             eEEEEcCCCchHHHHHHHHH-----hCCCccEEEEEecCC
Q 028437           30 KVAVLGAAGGIGQPLALLMK-----LNPLVSRLALYDIAN   64 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~-----~~g~~~ev~l~D~~~   64 (209)
                      -|+|+|| |-+|..+|..|+     ..|+  +|+++++.+
T Consensus         9 DV~IvGa-G~aGl~lA~~La~~~~~~~G~--~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGA-GPAGLMAARVLSEYVRQKPDL--KVRIIDKRS   45 (360)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHHHHSTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHhcccccCCC--cEEEEcCCC
Confidence            5999999 999999999996     4788  999999863

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=92.26  E-value=0.071  Score=39.45  Aligned_cols=32  Identities=16%  Similarity=0.152  Sum_probs=29.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      -|+|||| |..|...+..+.+.|.  +|.+++.+.
T Consensus         4 DvvVIG~-G~aG~~aA~~a~~~G~--kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGG-GSGGIASINRAAMYGQ--KCALIEAKE   35 (217)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            4899999 9999999999999999  999999864

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.23  E-value=0.25  Score=35.22  Aligned_cols=76  Identities=22%  Similarity=0.253  Sum_probs=45.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCchhhhc-----CCCCE
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQAL-----EDSDV   99 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~-----~~aD~   99 (209)
                      ++-.+|+|.|+ |.+|...++.+...|. ..|+..|.++.+ ..+.++....   .+......++.++.+     .++|+
T Consensus        27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~lGa~~---~i~~~~~~~~~~~~~~~~~~~g~D~  101 (176)
T d2fzwa2          27 EPGSVCAVFGL-GGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEFGATE---CINPQDFSKPIQEVLIEMTDGGVDY  101 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHHTCSE---EECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CCCCEEEEecc-hhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHHhCCcE---EEeCCchhhHHHHHHHHHcCCCCcE
Confidence            34468999999 8899988888887774 378888876532 2334444322   110000011222222     57999


Q ss_pred             EEEcCCC
Q 028437          100 VIIPAGV  106 (209)
Q Consensus       100 Vi~~ag~  106 (209)
                      ||.++|.
T Consensus       102 vid~~G~  108 (176)
T d2fzwa2         102 SFECIGN  108 (176)
T ss_dssp             EEECSCC
T ss_pred             eeecCCC
Confidence            9999764

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.21  E-value=0.87  Score=35.98  Aligned_cols=31  Identities=13%  Similarity=0.155  Sum_probs=25.8

Q ss_pred             EEEEcCC--CchHHHHHHHHHhCCCccEEEEEecC
Q 028437           31 VAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        31 I~IiGas--G~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      .+||||+  ..+|..++..|++.|.  +|++.++.
T Consensus         5 AlITGaa~s~GIG~aiA~~la~~GA--~V~i~~~~   37 (329)
T d1uh5a_           5 CFIAGIGDTNGYGWGIAKELSKRNV--KIIFGIWP   37 (329)
T ss_dssp             EEEECCSSSSSHHHHHHHHHHHTTC--EEEEEECG
T ss_pred             EEEeCCCCCChHHHHHHHHHHHcCC--EEEEEeCc
Confidence            4578852  3799999999999999  99998764

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.07  E-value=0.21  Score=35.84  Aligned_cols=72  Identities=13%  Similarity=0.061  Sum_probs=45.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCC--CCcceeEeecCCchhhhcCCCCEEE
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aD~Vi  101 (209)
                      +..||+++|-...|..+++..|..-|.  ++.++.....   ......+....  ....+..   +.|..++++++|+|+
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~--~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~ea~~~adviy   77 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGTKLGA--DVVVATPEGYEPDEKVIKWAEQNAAESGGSFEL---LHDPVKAVKDADVIY   77 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHTTC--EEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEE---ESCHHHHTTTCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC--eEEEecccccCCChHHHHHHHHhhhcccceEEE---ecCHHHHhhhccEEe
Confidence            346999999966677778888888888  9998877431   11111111100  0112333   357789999999998


Q ss_pred             Ec
Q 028437          102 IP  103 (209)
Q Consensus       102 ~~  103 (209)
                      ..
T Consensus        78 ~~   79 (163)
T d1pvva2          78 TD   79 (163)
T ss_dssp             EC
T ss_pred             ec
Confidence            76

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.00  E-value=0.13  Score=37.60  Aligned_cols=94  Identities=13%  Similarity=0.138  Sum_probs=56.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCc-hhHHHhhcCCCCCcceeEeecCCchhhh-----cCCCCEEEE
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQA-----LEDSDVVII  102 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a-----~~~aD~Vi~  102 (209)
                      .+|+|.||+|.||...++.+...|.  +|+....++. .....++....   .+ ..  +++.++.     =++.|+|+-
T Consensus        33 ~~VLI~gaaGGVG~~aiQlak~~Ga--~Viat~~s~~k~~~~~~lGa~~---vi-~~--~~~~~~~~~~~~~~gvD~vid  104 (176)
T d1xa0a2          33 GPVLVTGATGGVGSLAVSMLAKRGY--TVEASTGKAAEHDYLRVLGAKE---VL-AR--EDVMAERIRPLDKQRWAAAVD  104 (176)
T ss_dssp             CCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESCTTCHHHHHHTTCSE---EE-EC--C---------CCSCCEEEEEE
T ss_pred             CEEEEEeccchHHHHHHHHHHHcCC--ceEEecCchHHHHHHHhcccce---ee-ec--chhHHHHHHHhhccCcCEEEE
Confidence            4799999999999999999999998  8888877542 22333332221   11 11  1111111     137899999


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      +.|-.         .+.          +.++-..|.++++.+++..+
T Consensus       105 ~vgg~---------~~~----------~~l~~l~~~Griv~~G~~~g  132 (176)
T d1xa0a2         105 PVGGR---------TLA----------TVLSRMRYGGAVAVSGLTGG  132 (176)
T ss_dssp             CSTTT---------THH----------HHHHTEEEEEEEEECSCCSS
T ss_pred             cCCch---------hHH----------HHHHHhCCCceEEEeecccC
Confidence            87532         122          33333457889998876533

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=91.93  E-value=0.19  Score=38.24  Aligned_cols=63  Identities=13%  Similarity=0.125  Sum_probs=38.9

Q ss_pred             CCCchHHHHHHHHHhCCCccEEEEEecCCchhHHHhhcCCCCCcceeEeecCCch----hhhcCCCCEEEEcCCCC
Q 028437           36 AAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVIIPAGVP  107 (209)
Q Consensus        36 asG~vG~~la~~L~~~g~~~ev~l~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~----~~a~~~aD~Vi~~ag~~  107 (209)
                      .||.+|..||..+..+|.  +|+++--...      .. .+....+..+....++    .+.++++|++|++|.+.
T Consensus        30 SSGk~G~aiA~~~~~~Ga--~V~li~g~~~------~~-~p~~~~~~~~~t~~~m~~~~~~~~~~~D~~i~aAAvs   96 (223)
T d1u7za_          30 SSGKMGFAIAAAAARRGA--NVTLVSGPVS------LP-TPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAVA   96 (223)
T ss_dssp             CCSHHHHHHHHHHHHTTC--EEEEEECSCC------CC-CCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECCBCC
T ss_pred             CcHHHHHHHHHHHHHcCC--chhhhhcccc------cC-cccccccceehhhHHHHHHHHhhhccceeEeeeechh
Confidence            379999999999999999  9999965321      00 0000011111111222    23457999999998765

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.85  E-value=0.068  Score=38.26  Aligned_cols=33  Identities=18%  Similarity=0.274  Sum_probs=26.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEec
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~   62 (209)
                      .+|+|+|| |++|.-++..|.+.|.-.+|+..+.
T Consensus         4 ~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           4 DNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence            58999999 9999999999999887224555444

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.77  E-value=0.15  Score=35.88  Aligned_cols=35  Identities=11%  Similarity=0.086  Sum_probs=29.1

Q ss_pred             CCCeEEEE--cCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           27 PDRKVAVL--GAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        27 ~~~kI~Ii--GasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +...++|+  |+ |++|..++..|.+.|.  +|+++.+.+
T Consensus        38 ~~~~vvi~d~gg-g~ig~e~A~~la~~G~--~Vtlv~~~~   74 (156)
T d1djqa2          38 IGKRVVILNADT-YFMAPSLAEKLATAGH--EVTIVSGVH   74 (156)
T ss_dssp             CCSEEEEEECCC-SSHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             cCCceEEEecCC-ChHHHHHHHHHHHcCC--eEEEEecCC
Confidence            33455555  88 9999999999999999  999998864

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=91.73  E-value=0.082  Score=40.96  Aligned_cols=43  Identities=23%  Similarity=0.405  Sum_probs=33.1

Q ss_pred             cccccCCCCCC--CeEEEEcCCCchHHHHHHHHHh-CCCccEEEEEecC
Q 028437           18 ARGYSSESVPD--RKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIA   63 (209)
Q Consensus        18 ~~~~~~~~~~~--~kI~IiGasG~vG~~la~~L~~-~g~~~ev~l~D~~   63 (209)
                      .|+|..++.+.  .-|+|||| |..|...|..|++ .|+  +|.++|..
T Consensus        21 ~~~~~~~~~~~~e~DViVIGa-GpaGL~aA~~LA~~~G~--~V~vlE~~   66 (278)
T d1rp0a1          21 TRRYMTDMITYAETDVVVVGA-GSAGLSAAYEISKNPNV--QVAIIEQS   66 (278)
T ss_dssp             HHHHHHHHHHHTEEEEEEECC-SHHHHHHHHHHHTSTTS--CEEEEESS
T ss_pred             HHhhhcccccccCCCEEEECC-CHHHHHHHHHHHHccCC--eEEEEecC
Confidence            34444443322  35999999 9999999999987 499  99999985

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=0.11  Score=36.19  Aligned_cols=34  Identities=15%  Similarity=0.177  Sum_probs=27.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh----CCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKL----NPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~----~g~~~ev~l~D~~~   64 (209)
                      ..+|+|+|| |++|.-++..|.+    .|.  +|++++..+
T Consensus        37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~--~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGG-GFLGSELACALGRKARALGT--EVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHHHHhcCC--EEEEecccc
Confidence            458999999 9999999887753    466  999998853

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=91.16  E-value=0.1  Score=37.41  Aligned_cols=35  Identities=31%  Similarity=0.381  Sum_probs=26.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIA   63 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~   63 (209)
                      |.+|+|.|+||+||.+....+.+..- + +|..+--.
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~   37 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTAN   37 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEES
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeC
Confidence            57999999999999999888877532 2 66666543

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=90.98  E-value=0.11  Score=37.43  Aligned_cols=32  Identities=19%  Similarity=0.181  Sum_probs=25.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEec
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~   62 (209)
                      +|+|+|+ |++|..++..|.+.|.-.+|+++..
T Consensus         5 ~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           5 PVVVLGA-GLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CEEEECc-cHHHHHHHHHHHhcCCceEEEEEec
Confidence            7999999 9999999999988876335555544

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.92  E-value=0.054  Score=39.73  Aligned_cols=33  Identities=15%  Similarity=0.329  Sum_probs=29.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ..+|+|+|| |..|...|..|.+.|+  +++++|..
T Consensus         5 ~~~VvIIGg-GpaGl~aA~~~ar~g~--~v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGS-GPAAHTAAIYAARAEL--KPLLFEGW   37 (192)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTC--CCEEECCS
T ss_pred             cceEEEECC-CHHHHHHHHHHHHcCC--cEEEEEee
Confidence            358999999 9999999999999998  88898853

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=90.82  E-value=0.66  Score=32.70  Aligned_cols=69  Identities=12%  Similarity=0.055  Sum_probs=43.0

Q ss_pred             CCeEEEEcCCCc--hHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCchhhhcCCCCEEEEc
Q 028437           28 DRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (209)
Q Consensus        28 ~~kI~IiGasG~--vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~Vi~~  103 (209)
                      ..||+++|=.-.  +..+++..+..-|.  +++++-..+.. .....+...  ...+..   ++|++++++++|+|...
T Consensus         3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g~--~~~~~~p~~~~~~~~~~~~~~--~~~~~~---~~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           3 GLVFALLGDLKYARTVNSLLRILTRFRP--KLVYLISPQLLRARKEILDEL--NYPVKE---VENPFEVINEVDVLYVT   74 (153)
T ss_dssp             TCEEEEEECCSSCHHHHHHHHHGGGSCC--SEEEEECCGGGCCCHHHHTTC--CSCEEE---ESCGGGTGGGCSEEEEE
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHHcCC--eeEEEecccccccchhhcccC--CCeEEE---EeCHHHHhhcCCeEEEe
Confidence            469999998333  88899998888887  66655443211 011111111  123333   35788999999998876

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.81  E-value=0.11  Score=40.56  Aligned_cols=33  Identities=24%  Similarity=0.343  Sum_probs=30.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      --|+|||+ |..|...|..|++.|.  +|.+++..+
T Consensus        17 ~DVlVIG~-G~aGl~aA~~la~~G~--~V~lvEK~~   49 (308)
T d1y0pa2          17 VDVVVVGS-GGAGFSAAISATDSGA--KVILIEKEP   49 (308)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            36999999 9999999999999999  999999864

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=90.67  E-value=0.069  Score=38.87  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=29.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ..+|+|||+ |..|..-|..+.+.|.  +++++++.
T Consensus         5 ~~dVvIIGG-GpaGl~AA~~~ar~g~--~v~iie~~   37 (190)
T d1trba1           5 HSKLLILGS-GPAGYTAAVYAARANL--QPVLITGM   37 (190)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHTTTC--CCEEECCS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC--ceEEEEee
Confidence            358999999 9999999999999999  99999864

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.41  E-value=0.14  Score=38.27  Aligned_cols=33  Identities=12%  Similarity=0.137  Sum_probs=29.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      .++|+|| |++|..++..|.+.+.-.+|++++.+
T Consensus         6 ~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~e   38 (213)
T d1m6ia1           6 PFLLIGG-GTAAFAAARSIRARDPGARVLIVSED   38 (213)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred             CEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            6889999 99999999999888876689999864

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.14  E-value=0.13  Score=42.19  Aligned_cols=33  Identities=33%  Similarity=0.463  Sum_probs=29.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh------CCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKL------NPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~------~g~~~ev~l~D~~~   64 (209)
                      --|+|+|| |-.|.+.|..|++      .|+  +|.++++..
T Consensus        33 ~DViIVGg-GPAGlsaA~~LA~l~~~~~~Gl--~VlllEK~~   71 (380)
T d2gmha1          33 ADVVIVGA-GPAGLSAATRLKQLAAQHEKDL--RVCLVEKAA   71 (380)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHHHHTTCCC--CEEEECSSS
T ss_pred             CCEEEECC-CHHHHHHHHHHHhhhhhhcCCC--EEEEEcCCC
Confidence            47999999 9999999999987      789  999999853

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.13  E-value=0.12  Score=38.13  Aligned_cols=31  Identities=16%  Similarity=0.185  Sum_probs=28.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      -|+|||| |..|...|..+.+.|.  ++.++|..
T Consensus         5 DvvVIGg-GpaGl~aA~~aa~~G~--kV~vie~~   35 (221)
T d1dxla1           5 DVVIIGG-GPGGYVAAIKAAQLGF--KTTCIEKR   35 (221)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC--CEEEEECS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEec
Confidence            4899999 9999999999999999  99999975

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.07  E-value=0.094  Score=38.90  Aligned_cols=35  Identities=17%  Similarity=0.198  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        27 ~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      +.--|+|||+ |..|...|..+++.|+  +|.++|..+
T Consensus         4 ~~yDviVIG~-GpAGl~aA~~aa~~G~--kV~lie~~~   38 (233)
T d1v59a1           4 KSHDVVIIGG-GPAGYVAAIKAAQLGF--NTACVEKRG   38 (233)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             cccCEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            3346999999 9999999999999999  999999753

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=90.04  E-value=0.5  Score=35.68  Aligned_cols=70  Identities=14%  Similarity=0.295  Sum_probs=37.6

Q ss_pred             CCCCeEEEEcCCCc----hHHHHHHHHHhC-CCccEEE-EEecCCchhH--HHhhcCCCCCcceeEeecCCchhhhcC--
Q 028437           26 VPDRKVAVLGAAGG----IGQPLALLMKLN-PLVSRLA-LYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALE--   95 (209)
Q Consensus        26 ~~~~kI~IiGasG~----vG~~la~~L~~~-g~~~ev~-l~D~~~~~~~--~~dl~~~~~~~~v~~~~~~~d~~~a~~--   95 (209)
                      .+++||+|+|+ |.    ++..-+..+.+. +.+ +|+ ++|+++....  ...+...    ....+   +++++.++  
T Consensus        14 ~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~-~ivav~d~~~~~~~~~~~~~~~~----~~~~~---~~~~~l~~~~   84 (237)
T d2nvwa1          14 SRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQF-QIVALYNPTLKSSLQTIEQLQLK----HATGF---DSLESFAQYK   84 (237)
T ss_dssp             GCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTE-EEEEEECSCHHHHHHHHHHTTCT----TCEEE---SCHHHHHHCT
T ss_pred             CCCeEEEEEec-CccccHHHHHHHHHHHhcCCCe-EEEEEEcCCHHHHHHHHHhcccc----cceee---cchhhccccc
Confidence            45589999998 65    444444455443 222 666 6777643221  2222111    11222   35666664  


Q ss_pred             CCCEEEEcC
Q 028437           96 DSDVVIIPA  104 (209)
Q Consensus        96 ~aD~Vi~~a  104 (209)
                      +.|+|+++.
T Consensus        85 ~iD~V~i~t   93 (237)
T d2nvwa1          85 DIDMIVVSV   93 (237)
T ss_dssp             TCSEEEECS
T ss_pred             ccceeeccC
Confidence            678888884

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.91  E-value=0.77  Score=32.51  Aligned_cols=75  Identities=19%  Similarity=0.200  Sum_probs=43.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCCch-hHHHhhcCCCCCcceeEeecCCc-hhhh-----cCCCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQ-LGQA-----LEDSD   98 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d-~~~a-----~~~aD   98 (209)
                      ++..+|+|+|+ |-+|...+..+...+- .+|+.+|+++.+ ..+.++....   .+. .....+ .++.     =.++|
T Consensus        27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~-~~Vi~~~~~~~rl~~a~~~GAd~---~in-~~~~~~~~~~~~~~~~~~G~d  100 (175)
T d1cdoa2          27 EPGSTCAVFGL-GAVGLAAVMGCHSAGA-KRIIAVDLNPDKFEKAKVFGATD---FVN-PNDHSEPISQVLSKMTNGGVD  100 (175)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCCE---EEC-GGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCCEEEEEec-CCccchHHHHHHHHhh-chheeecchHHHHHHHHHcCCcE---EEc-CCCcchhHHHHHHhhccCCcc
Confidence            44468999999 8888887777766553 389999987532 2333443221   111 100111 1111     14799


Q ss_pred             EEEEcCCC
Q 028437           99 VVIIPAGV  106 (209)
Q Consensus        99 ~Vi~~ag~  106 (209)
                      +|+.++|.
T Consensus       101 ~vid~~G~  108 (175)
T d1cdoa2         101 FSLECVGN  108 (175)
T ss_dssp             EEEECSCC
T ss_pred             eeeeecCC
Confidence            99999864

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.86  E-value=0.19  Score=35.86  Aligned_cols=71  Identities=20%  Similarity=0.229  Sum_probs=45.5

Q ss_pred             CCeEEEEc-CCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCC--CCCcceeEeecCCchhhhcCCCCEEE
Q 028437           28 DRKVAVLG-AAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHI--NTRSEVAGYMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        28 ~~kI~IiG-asG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~--~~~~~v~~~~~~~d~~~a~~~aD~Vi  101 (209)
                      ..||+++| +...|-.+++..+..-|.  ++++......   ..........  .....+..   ++|++++++++|+|+
T Consensus         3 g~ki~~vGD~~nnV~~Sli~~~~~~g~--~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~---~~d~~~ai~~aDviy   77 (161)
T d1vlva2           3 GVKVVFMGDTRNNVATSLMIACAKMGM--NFVACGPEELKPRSDVFKRCQEIVKETDGSVSF---TSNLEEALAGADVVY   77 (161)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHTTC--EEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEE---ESCHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEecchhhhhhhhHHHHHHHHHhhcCCceEE---EecHHHhhhhhhhee
Confidence            45999999 435788888888888898  9998876421   1111111110  00113333   357899999999999


Q ss_pred             Ec
Q 028437          102 IP  103 (209)
Q Consensus       102 ~~  103 (209)
                      ..
T Consensus        78 t~   79 (161)
T d1vlva2          78 TD   79 (161)
T ss_dssp             EC
T ss_pred             cc
Confidence            86

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=89.73  E-value=0.2  Score=35.83  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=25.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CccEEEEEec
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDI   62 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g-~~~ev~l~D~   62 (209)
                      |.||+|.|+||+||.+....+.+.. .+ +|..+--
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa   35 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVA   35 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEE
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEe
Confidence            4579999999999999988887753 22 6665544

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=89.72  E-value=0.14  Score=40.81  Aligned_cols=30  Identities=17%  Similarity=0.196  Sum_probs=28.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEec
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~   62 (209)
                      -|.|||+ |+.|..+|..|.+.|+  +|.++++
T Consensus         4 ~VIVVGs-G~aG~v~A~rLaeaG~--~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGT-GYGAAVSALRLGEAGV--QTLMLEM   33 (367)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEES
T ss_pred             eEEEeCc-CHHHHHHHHHHHHCcC--eEEEEec
Confidence            3789999 9999999999999999  9999987

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=89.66  E-value=0.17  Score=36.13  Aligned_cols=31  Identities=23%  Similarity=0.353  Sum_probs=28.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      -|+|+|| |..|...+..+.+.|.  ++.+++++
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~--~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGI--RTGLMGER   33 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEECSS
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCC--eEEEEEEe
Confidence            5899999 9999999999999999  89999864

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.81  E-value=0.21  Score=33.14  Aligned_cols=32  Identities=13%  Similarity=0.097  Sum_probs=24.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ++|+|+|+ |.-|..++..|....-  ++++..+.
T Consensus        33 K~VlVVG~-g~Sa~dia~~l~~~ak--~v~~~~~r   64 (107)
T d2gv8a2          33 ESVLVVGG-ASSANDLVRHLTPVAK--HPIYQSLL   64 (107)
T ss_dssp             CCEEEECS-SHHHHHHHHHHTTTSC--SSEEEECT
T ss_pred             CeEEEECC-CCCHHHHHHHHHHhcC--EEEEEEec
Confidence            59999999 9999999999976543  55555553

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=88.78  E-value=0.2  Score=39.39  Aligned_cols=33  Identities=21%  Similarity=0.388  Sum_probs=30.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .-|+|||+ |..|...+..|++.|+  +|++++..+
T Consensus        24 ~DVvVIG~-G~aGl~aA~~la~~G~--~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGS-GGAGLAAAVSARDAGA--KVILLEKEP   56 (322)
T ss_dssp             CSEEEECS-SHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             ceEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            35999999 9999999999999999  999999854

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.78  E-value=0.16  Score=37.65  Aligned_cols=33  Identities=15%  Similarity=0.125  Sum_probs=30.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ..|+|||| |..|...+..+.+.|.  +|.+++.++
T Consensus         6 ~DlvVIG~-GpaGl~aA~~aa~~G~--~V~liE~~~   38 (220)
T d1lvla1           6 TTLLIIGG-GPGGYVAAIRAGQLGI--PTVLVEGQA   38 (220)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            36999999 9999999999999999  999999764

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.53  E-value=0.24  Score=36.40  Aligned_cols=32  Identities=22%  Similarity=0.138  Sum_probs=29.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      -++|+|+ |..|...+..+.+.|.  +|.+++.+.
T Consensus         5 DviIIG~-GpaG~~aA~~aar~G~--kV~vIEk~~   36 (221)
T d3grsa1           5 DYLVIGG-GSGGLASARRAAELGA--RAAVVESHK   36 (221)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            3789999 9999999999999999  999998754

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.36  E-value=0.2  Score=37.23  Aligned_cols=31  Identities=16%  Similarity=0.227  Sum_probs=28.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      -|+|||| |..|...|..+++.|+  +|.+++..
T Consensus         5 DviVIG~-GpaGl~aA~~aa~~G~--kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGG-GSGGLAAAKEAAKFDK--KVMVLDFV   35 (235)
T ss_dssp             EEEEECC-SHHHHHHHHHHGGGCC--CEEEECCC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--eEEEEecc
Confidence            4899999 9999999999999999  99999954

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.18  E-value=0.25  Score=36.70  Aligned_cols=32  Identities=28%  Similarity=0.335  Sum_probs=29.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      -|+|||| |..|...+..+.+.|+  +|.+++..+
T Consensus         8 DviIIG~-GPaGlsaA~~aa~~G~--~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGG-GPGGYSAAFAAADEGL--KVAIVERYK   39 (229)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            4899999 9999999999999999  999999754

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.83  E-value=0.53  Score=34.36  Aligned_cols=71  Identities=17%  Similarity=0.185  Sum_probs=45.9

Q ss_pred             CCeEEEEc-CCCchHHHHHHHHHhCCCccEEEEEecCCc---hhHHHhhcCCC--CCcceeEeecCCchhhhcCCCCEEE
Q 028437           28 DRKVAVLG-AAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVI  101 (209)
Q Consensus        28 ~~kI~IiG-asG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aD~Vi  101 (209)
                      ..||+++| +.-.|..+++..+..-|.  +++++.....   .....++....  ....+..   +++++++++++|+|.
T Consensus         5 ~lkia~vGD~~nnV~~Sli~~~~~~G~--~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~eai~~aDvVy   79 (185)
T d1dxha2           5 DISYAYLGDARNNMGNSLLLIGAKLGM--DVRIAAPKALWPHDEFVAQCKKFAEESGAKLTL---TEDPKEAVKGVDFVH   79 (185)
T ss_dssp             GCEEEEESCCSSHHHHHHHHHHHHTTC--EEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEE---ESCHHHHTTTCSEEE
T ss_pred             CCEEEEEcCCcchHHHHHHHHHHHcCC--EEEEEccHHHHhhhHHHHHHHHHhhccCCeEEE---EeChhhccccccEEE
Confidence            36999999 423688888888888898  9999987421   11111111110  0112332   357899999999988


Q ss_pred             Ec
Q 028437          102 IP  103 (209)
Q Consensus       102 ~~  103 (209)
                      ..
T Consensus        80 t~   81 (185)
T d1dxha2          80 TD   81 (185)
T ss_dssp             EC
T ss_pred             ee
Confidence            76

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=87.75  E-value=1.1  Score=33.97  Aligned_cols=36  Identities=19%  Similarity=0.359  Sum_probs=31.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      -..++|+|-|- |.||+.++..|.+.|-  .|+..|.++
T Consensus        37 l~g~~v~IqG~-GnVG~~~a~~L~~~Ga--kvv~~d~~~   72 (230)
T d1leha1          37 LEGLAVSVQGL-GNVAKALCKKLNTEGA--KLVVTDVNK   72 (230)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEeecccH
Confidence            34469999999 9999999999999998  999999874

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=87.70  E-value=0.27  Score=37.39  Aligned_cols=31  Identities=23%  Similarity=0.293  Sum_probs=28.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        31 I~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ++|||+ |..|...+..+++.|.  +|.++|.+.
T Consensus         4 viVIG~-G~aG~~aA~~aa~~G~--~V~liE~~~   34 (259)
T d1onfa1           4 LIVIGG-GSGGMAAARRAARHNA--KVALVEKSR   34 (259)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--eEEEEecCC
Confidence            789999 9999999999999999  999999864

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.65  E-value=0.83  Score=32.21  Aligned_cols=34  Identities=26%  Similarity=0.082  Sum_probs=27.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ..||+|+|+ |.+|.-.+..+.+.|- .+|+++-+.
T Consensus        45 ~~kVvVIGG-GdtA~D~A~~a~r~GA-~~V~vi~rr   78 (153)
T d1gtea3          45 RGAVIVLGA-GDTAFDCATSALRCGA-RRVFLVFRK   78 (153)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHTTC-SEEEEECSS
T ss_pred             CCEEEEECC-ChhHHHHHHHHHHcCC-cceeEEEeC
Confidence            359999999 9999999998888874 367777664

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.37  E-value=0.31  Score=35.59  Aligned_cols=32  Identities=22%  Similarity=0.235  Sum_probs=29.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      -|.|||+ |..|...+..+.+.|.  ++.++++..
T Consensus         5 DviVIG~-GpaGl~aA~~aar~G~--kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGA-GPGGYVAAIRAAQLGQ--KVTIVEKGN   36 (223)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEecCC
Confidence            4899999 9999999999999999  999998753

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.28  E-value=0.24  Score=36.22  Aligned_cols=31  Identities=32%  Similarity=0.274  Sum_probs=28.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      -|+|||| |..|...+..+.+.|+  ++.++|..
T Consensus         5 DviIIGg-GpAGl~aA~~aar~G~--~V~viE~~   35 (229)
T d3lada1           5 DVIVIGA-GPGGYVAAIKSAQLGL--KTALIEKY   35 (229)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEEECC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEecc
Confidence            4899999 9999999999999999  99999974

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=86.69  E-value=4.5  Score=31.03  Aligned_cols=36  Identities=25%  Similarity=0.321  Sum_probs=25.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        26 ~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .++.+|+|+|+ |  +..++..+++.....+|.++++|+
T Consensus        74 ~~p~~vLiiGg-G--~G~~~~~~l~~~~~~~i~~VEID~  109 (274)
T d1iy9a_          74 PNPEHVLVVGG-G--DGGVIREILKHPSVKKATLVDIDG  109 (274)
T ss_dssp             SSCCEEEEESC-T--TCHHHHHHTTCTTCSEEEEEESCH
T ss_pred             CCcceEEecCC-C--CcHHHHHHHhcCCcceEEEecCCH
Confidence            45579999998 5  244555566554346999999986

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=86.68  E-value=0.42  Score=33.11  Aligned_cols=36  Identities=17%  Similarity=0.229  Sum_probs=28.7

Q ss_pred             CCCCeEEEEcCCCc-----------hHHHHHHHHHhCCCccEEEEEecCC
Q 028437           26 VPDRKVAVLGAAGG-----------IGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        26 ~~~~kI~IiGasG~-----------vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ....||+|+|+ |-           -+.+.+..|.+.|+  ++++++.++
T Consensus         5 ~~~kkvlilGs-Gp~~IGq~~EfDy~~~~a~~alke~g~--~~iliN~NP   51 (127)
T d1a9xa3           5 TDIKSILILGA-GPIVIGQACEFDYSGAQACKALREEGY--RVINVNSNP   51 (127)
T ss_dssp             SSCCEEEEECC-CSCBTTBCTHHHHHHHHHHHHHHHHTC--EEEEECSCT
T ss_pred             CCCCEEEEECC-CcCcccccchhHHHHHHHHHHHHHcCC--eEEEecCch
Confidence            34479999998 63           35566778888999  999999986

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=86.32  E-value=0.34  Score=38.06  Aligned_cols=30  Identities=30%  Similarity=0.507  Sum_probs=28.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEec
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~   62 (209)
                      -++|+|+ |.-|..+|.+|.+.|+  +|.+++.
T Consensus         6 DviIVGs-G~aG~v~A~~La~~G~--kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGS-GPIGCTYARELVGAGY--KVAMFDI   35 (379)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--EEEEECS
T ss_pred             cEEEECc-CHHHHHHHHHHhhCCC--eEEEEec
Confidence            5899999 9999999999999999  9999986

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.20  E-value=1.7  Score=34.36  Aligned_cols=37  Identities=14%  Similarity=0.292  Sum_probs=26.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ...+.||+|+|+ |.  ..++..+++...+.+|.++++|+
T Consensus       104 ~~~pk~VLIiGg-G~--G~~~rellk~~~v~~v~~VEID~  140 (312)
T d2b2ca1         104 HPDPKRVLIIGG-GD--GGILREVLKHESVEKVTMCEIDE  140 (312)
T ss_dssp             SSSCCEEEEESC-TT--SHHHHHHTTCTTCCEEEEECSCH
T ss_pred             CCCCCeEEEeCC-Cc--hHHHHHHHHcCCcceEEEEcccH
Confidence            345679999998 62  34566666655456999999986

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=86.13  E-value=0.34  Score=37.88  Aligned_cols=32  Identities=19%  Similarity=0.236  Sum_probs=29.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      -|+|||+ |..|..-|..+++.|.  +|.+++..+
T Consensus         7 DVvVIG~-G~AGl~AAl~aa~~G~--~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGG-GLAGLRAAVATQQKGL--STIVLSLIP   38 (336)
T ss_dssp             SEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEecCC
Confidence            3899999 9999999999999998  999998754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.94  E-value=1.8  Score=29.92  Aligned_cols=49  Identities=4%  Similarity=0.125  Sum_probs=32.1

Q ss_pred             hhhcCCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus        91 ~~a~~~aD~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      ...++++|.+++.-...     ++.     ..+.+.++.+.+.+++++..+++++|=.|
T Consensus        69 ~~~~~~~~~~i~v~d~~-----~~~-----s~~~~~~~~~~i~~~~~~~~iilVgnK~D  117 (164)
T d1z2aa1          69 KAYYRGAQACVLVFSTT-----DRE-----SFEAISSWREKVVAEVGDIPTALVQNKID  117 (164)
T ss_dssp             HHHHTTCCEEEEEEETT-----CHH-----HHHTHHHHHHHHHHHHCSCCEEEEEECGG
T ss_pred             hhhhccCceEEEEEecc-----chh-----hhhhcccccccccccCCCceEEEeeccCC
Confidence            45688999988874322     111     12233556677777778888888988877

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=85.87  E-value=0.32  Score=38.72  Aligned_cols=30  Identities=20%  Similarity=0.275  Sum_probs=27.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEec
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~   62 (209)
                      -+.|||+ |+.|..+|..|.+.|+  +|.+++.
T Consensus         9 dvIVVGs-G~aG~v~A~rLaeaG~--~VlvLEa   38 (370)
T d3coxa1           9 PALVIGS-GYGGAVAALRLTQAGI--PTQIVEM   38 (370)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeC
Confidence            4789999 9999999999999999  9999986

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.80  E-value=0.48  Score=34.37  Aligned_cols=34  Identities=26%  Similarity=0.184  Sum_probs=26.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ..|+|.||+|.||+..++.+...|. ..|+..+..
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga-~~vi~~~~~   65 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGC-SRVVGICGT   65 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTC-SEEEEEESS
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCC-cceecccch
Confidence            3699999999999999998888886 145545543

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=85.77  E-value=0.28  Score=37.45  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=27.6

Q ss_pred             CCeEEEEcCCCchHHHH-----HHHHHhCCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPL-----ALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~l-----a~~L~~~g~~~ev~l~D~~~   64 (209)
                      |.+|+|.|= |.+|.+.     +..|++.|+  .|.++|-|+
T Consensus         1 mr~Iai~gK-GGvGKTT~a~nLA~~LA~~G~--rVllID~D~   39 (269)
T d1cp2a_           1 MRQVAIYGK-GGIGKSTTTQNLTSGLHAMGK--TIMVVGCDP   39 (269)
T ss_dssp             CEEEEEEEC-TTSSHHHHHHHHHHHHHTTTC--CEEEEEECT
T ss_pred             CCEEEEECC-CcCCHHHHHHHHHHHHHhCCC--cEEEEecCC
Confidence            458999995 8888863     457788898  999999985

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=85.71  E-value=0.53  Score=35.71  Aligned_cols=51  Identities=16%  Similarity=0.152  Sum_probs=37.3

Q ss_pred             ccccccccccccCCCCC---CCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           11 TLAKPAGARGYSSESVP---DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        11 ~~~~~~~~~~~~~~~~~---~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .+..|.++.....--..   .-.+.|||+ |..|...+..+.+.|.  ++.+++..+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~k~yDvvVIGg-G~aG~~aA~~~a~~G~--kv~vve~~~   75 (261)
T d1mo9a1          22 ILEAPDGGEVIYNVDENDPREYDAIFIGG-GAAGRFGSAYLRAMGG--RQLIVDRWP   75 (261)
T ss_dssp             HHHCTTCCCEEEECCTTCCSCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             hhhcCCCCceEecCCCCCCccCCEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            34556655554432222   235999999 9999999999999998  999998753

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=84.85  E-value=0.33  Score=38.07  Aligned_cols=33  Identities=33%  Similarity=0.358  Sum_probs=30.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      .-|+|||+ |..|...+..+++.|.  +|++++..+
T Consensus        20 ~DVvVIGa-G~aGl~AA~~aa~~G~--~V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVGA-GSAGFNASLAAKKAGA--NVILVDKAP   52 (317)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSS
T ss_pred             cCEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            46999999 9999999999999998  999998854

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=83.58  E-value=1.1  Score=30.63  Aligned_cols=34  Identities=18%  Similarity=0.227  Sum_probs=27.7

Q ss_pred             CCeEEEEcCCC-----------chHHHHHHHHHhCCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAG-----------GIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG-----------~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ..||+|+|+ |           +-+.+.+..|.+.|+  ++++++.++
T Consensus         4 ~kkvlViGs-Gp~rIGq~~EfDy~~~~a~~aLk~~g~--~~IliN~NP   48 (121)
T d1a9xa4           4 REKIMVLGG-GPNRIGQGIEFDYCCVHASLALREDGY--ETIMVNCNP   48 (121)
T ss_dssp             SCEEEEECC-CSCBTTBCHHHHHHHHHHHHHHHHTTC--EEEEECCCT
T ss_pred             CCEEEEECC-CcCcccccchhhHHHHHHHHHHHhcCC--eEEEEecCh
Confidence            459999998 7           335567778889999  999999876

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=83.46  E-value=6.6  Score=28.74  Aligned_cols=37  Identities=22%  Similarity=0.123  Sum_probs=24.1

Q ss_pred             CCCCCeEEEEcCCCchHHHH-----HHHHHhCCCccEEEEEecCC
Q 028437           25 SVPDRKVAVLGAAGGIGQPL-----ALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~l-----a~~L~~~g~~~ev~l~D~~~   64 (209)
                      .+++.-|+++|- ..+|.+.     |..+..+|.  .|.++..|.
T Consensus         7 ~~~~~vi~lvGp-~GvGKTTTiaKLA~~~~~~g~--kV~lit~Dt   48 (207)
T d1ls1a2           7 LKDRNLWFLVGL-QGSGKTTTAAKLALYYKGKGR--RPLLVAADT   48 (207)
T ss_dssp             CCSSEEEEEECC-TTTTHHHHHHHHHHHHHHTTC--CEEEEECCS
T ss_pred             CCCCcEEEEECC-CCCCHHHHHHHHHHHHHHCCC--cEEEEeccc
Confidence            334334677898 5577753     445566776  888888874

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=83.43  E-value=1.3  Score=31.89  Aligned_cols=71  Identities=11%  Similarity=0.226  Sum_probs=44.8

Q ss_pred             CCeEEEEcC-CCchHHHHHHHHHhCCCccEEEEEecCCc---hhH---HHhhcCCCCCcceeEeecCCchhhhcCCCCEE
Q 028437           28 DRKVAVLGA-AGGIGQPLALLMKLNPLVSRLALYDIANT---PGV---AADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (209)
Q Consensus        28 ~~kI~IiGa-sG~vG~~la~~L~~~g~~~ev~l~D~~~~---~~~---~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD~V  100 (209)
                      ..||+++|= .-.|..+++..+..-|.  +++++.....   ...   +.+.... ....+..   +++.+++++++|+|
T Consensus         5 ~l~i~~vGD~~nnv~~Sli~~~~~~g~--~l~~~~P~~~~~~~~~~~~~~~~~~~-~g~~~~~---~~d~~~a~~~aDvv   78 (183)
T d1duvg2           5 EMTLVYAGDARNNMGNSMLEAAALTGL--DLRLVAPQACWPEAALVTECRALAQQ-NGGNITL---TEDVAKGVEGADFI   78 (183)
T ss_dssp             GCEEEEESCTTSHHHHHHHHHHHHHCC--EEEEECCGGGCCCHHHHHHHHHHHHH-TTCEEEE---ESCHHHHHTTCSEE
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEEechHhhhhHHHHHHHHHHHHh-cCCceEE---EechhhccccCCEE
Confidence            369999994 12577888887777798  9999977421   111   1111111 1122332   35789999999999


Q ss_pred             EEcC
Q 028437          101 IIPA  104 (209)
Q Consensus       101 i~~a  104 (209)
                      ....
T Consensus        79 yt~~   82 (183)
T d1duvg2          79 YTDV   82 (183)
T ss_dssp             EECC
T ss_pred             EEEe
Confidence            8863

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.33  E-value=0.39  Score=37.52  Aligned_cols=33  Identities=24%  Similarity=0.450  Sum_probs=29.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC--CCccEEEEEecCC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIAN   64 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~--g~~~ev~l~D~~~   64 (209)
                      ..|+|+|+ |..|...+..|.++  |+  +|.+++.+.
T Consensus        51 ~~~~~~g~-g~~g~~~a~~~~~~~~~~--~~~~~~~~~   85 (311)
T d2gjca1          51 SDVIIVGA-GSSGLSAAYVIAKNRPDL--KVCIIESSV   85 (311)
T ss_dssp             ESEEEECC-SHHHHHHHHHHHHHCTTS--CEEEECSSS
T ss_pred             CCEEEECC-CHHHHHHHHHHHHhCCCC--eEEEEEcCC
Confidence            47999999 99999999999864  78  999999864

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=83.19  E-value=2.5  Score=30.20  Aligned_cols=34  Identities=12%  Similarity=0.073  Sum_probs=26.2

Q ss_pred             CCeEEEE-cCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           28 DRKVAVL-GAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        28 ~~kI~Ii-GasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      ..+++|+ ||+|.+|...++.+...|.  +++..-+.
T Consensus        29 g~~vli~~ga~g~vG~~aiqlAk~~Ga--~vI~~v~~   63 (189)
T d1gu7a2          29 GKDWFIQNGGTSAVGKYASQIGKLLNF--NSISVIRD   63 (189)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHHTC--EEEEEECC
T ss_pred             CCEEEEEeCCCchHHHHHHHHHhhcCC--eEEEEEec
Confidence            3478886 7779999999988888897  77666543

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.81  E-value=0.9  Score=29.38  Aligned_cols=32  Identities=19%  Similarity=0.365  Sum_probs=26.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecC
Q 028437           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (209)
Q Consensus        29 ~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~   63 (209)
                      |||+|+|. |-=-.+++..|.+...  +++++--+
T Consensus         1 MkVLviGs-GgREHAia~~l~~s~~--~v~~~pGN   32 (90)
T d1vkza2           1 VRVHILGS-GGREHAIGWAFAKQGY--EVHFYPGN   32 (90)
T ss_dssp             CEEEEEEC-SHHHHHHHHHHHHTTC--EEEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCC--eEEEecCC
Confidence            79999998 8666788999988877  88887433

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.41  E-value=1.4  Score=34.44  Aligned_cols=37  Identities=22%  Similarity=0.310  Sum_probs=26.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCccEEEEEecCC
Q 028437           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        25 ~~~~~kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~~~   64 (209)
                      ...+.+|+|+|+ |.  ..++..+++.....+|.+++.|+
T Consensus        76 ~~~pk~vLiiGg-G~--G~~~~~~l~~~~~~~v~~vEiD~  112 (285)
T d2o07a1          76 HPNPRKVLIIGG-GD--GGVLREVVKHPSVESVVQCEIDE  112 (285)
T ss_dssp             SSSCCEEEEEEC-TT--SHHHHHHTTCTTCCEEEEEESCH
T ss_pred             CcCcCeEEEeCC-Cc--hHHHHHHHHcCCcceeeeccCCH
Confidence            345679999998 52  34566666654446999999986

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.35  E-value=0.54  Score=36.23  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=27.5

Q ss_pred             CCeEEEEcCCCchHHH-----HHHHHHhCCCccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQP-----LALLMKLNPLVSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~-----la~~L~~~g~~~ev~l~D~~~   64 (209)
                      |.+|+|.|= |.+|.+     |+..|++.|+  +|.++|-|+
T Consensus         2 Mr~IaisgK-GGVGKTT~a~NLA~~LA~~G~--rVLlID~Dp   40 (289)
T d2afhe1           2 MRQCAIYGK-GGIGKSTTTQNLVAALAEMGK--KVMIVGCDP   40 (289)
T ss_dssp             CEEEEEEEC-TTSSHHHHHHHHHHHHHHTTC--CEEEEEECS
T ss_pred             ccEEEEECC-CCCCHHHHHHHHHHHHHHCCC--CEEEEecCC
Confidence            457999885 888875     4567788898  999999985

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=81.25  E-value=0.64  Score=37.13  Aligned_cols=30  Identities=20%  Similarity=0.155  Sum_probs=27.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCccEEEEEec
Q 028437           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (209)
Q Consensus        30 kI~IiGasG~vG~~la~~L~~~g~~~ev~l~D~   62 (209)
                      -+.|+|+ |..|..+|.+|.+.|+  +|.++..
T Consensus         4 D~IIVGs-G~aG~v~A~rLae~g~--~VlvLEa   33 (360)
T d1kdga1           4 DYIIVGA-GPGGIIAADRLSEAGK--KVLLLER   33 (360)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECS
T ss_pred             CEEEECc-CHHHHHHHHHHhhCCC--eEEEEEc
Confidence            4789999 9999999999999998  9999976

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.91  E-value=0.79  Score=34.06  Aligned_cols=36  Identities=19%  Similarity=0.352  Sum_probs=27.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-ccEEEEEecCC
Q 028437           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIAN   64 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~la~~L~~~g~-~~ev~l~D~~~   64 (209)
                      +.||+|||+ |..|...|..+.+.+. ...|.+++.+.
T Consensus         1 ~~~viVIG~-GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           1 VTRIVILGG-GPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            358999999 9999988876665443 12899999764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.76  E-value=6.1  Score=27.50  Aligned_cols=106  Identities=14%  Similarity=0.219  Sum_probs=52.5

Q ss_pred             CCeEEEEcCCCchHHH-HHHHHHhCCCccE-------EEEE--ecCCchhHHHhhcCCCCCcceeEeecCCchhhhcCCC
Q 028437           28 DRKVAVLGAAGGIGQP-LALLMKLNPLVSR-------LALY--DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (209)
Q Consensus        28 ~~kI~IiGasG~vG~~-la~~L~~~g~~~e-------v~l~--D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   97 (209)
                      ..||+|+|. ..+|.+ |+..+....+..+       ....  ..+. ......+.+.......     ..-.+..++++
T Consensus         5 ~iKivviG~-~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~-~~~~~~~~d~~g~~~~-----~~~~~~~~~~~   77 (183)
T d1mh1a_           5 AIKCVVVGD-GAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-KPVNLGLWDTAGQEDY-----DRLRPLSYPQT   77 (183)
T ss_dssp             EEEEEEECS-TTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETT-EEEEEEEECCCCSGGG-----TTTGGGGCTTC
T ss_pred             eEEEEEECC-CCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccC-cceEEEeecccccccc-----hhhhhhccccc
Confidence            369999999 889986 6677776543110       0000  0000 0000111111110000     11234557899


Q ss_pred             CEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q 028437           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (209)
Q Consensus        98 D~Vi~~ag~~~~~g~~r~~~~~~N~~~~~~i~~~i~~~~p~~~viv~snP~~  149 (209)
                      |.+++.-...     ++..+  .++.  ..+...++.++++..+++++|=.|
T Consensus        78 ~~~ilv~d~~-----~~~sf--~~i~--~~~~~~~~~~~~~~piilvgnK~D  120 (183)
T d1mh1a_          78 DVSLICFSLV-----SPASF--ENVR--AKWYPEVRHHCPNTPIILVGTKLD  120 (183)
T ss_dssp             SEEEEEEETT-----CHHHH--HHHH--HTHHHHHHHHSTTSCEEEEEECHH
T ss_pred             ceeeeeeccc-----hHHHH--HHHH--HHHHHHHHHhCCCCcEEEEeeccc
Confidence            9988874221     12211  1221  224455566677777888998877