Citrus Sinensis ID: 028445

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MEIAVKSLSLGLNPRIVNRRQHFDVSTPIISSKRACFLPQTRCDTHNFLKRKNHKYCPPIFVVLSAVEDAGVSSSQFEDFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQETD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccEEEEEEcccccccccccccccEEEEEEEccccEEEEEEEEcHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccccEEccccccEEEcccccccccccccHHHHHHHHHcHcccccccccEEEEEccccccccccccccccEEEEEEEccccEEEEEEEEcHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccccEEEEEEEEEccccc
Coil and Loop (DISEMBL)
MEIAVKSLslglnprivnrrqhfdvstpiisskracflpqtrcdthnflkrknhkycppiFVVLSAVedagvsssqfEDFVVSttrtneatelkigvevsgaktrAIFDDVFDKMVAaaqpipgfrrvkggktpniprdillevlgptnvyKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEklfepdekfsFDAVIKLQETD
Flexible Loop (DISEMBL)
meiavkslslglnprivnrrqhfdvstpiisskracflpqTRCDTHNFLKRKNHKYCPPIFVVLSAVEDAGVSSSQFEDFVVsttrtneatelkigvevsgaktRAIFDDVFDKMVAAaqpipgfrrvkggktpniPRDILLEVLGPTNVYKEVIKKVIDTTVAefvekedlkvskdlrVEQSFEdleklfepdekfsfdAVIKLQETD
Low Complexity Region (SEG)
MEIAVKSLSLGLNPRIVNRRQHFDVSTPIISSKRACFLPQTRCDTHNFLKRKNHKYCPPIFVVLSAVEDAGVSSSQFEDFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQETD
Disordered region (IsUnstruct)
*********LGLNPRIVNRRQHFDVSTPIISSKRACFLPQTRCDTHNFLKRKNHKYCPPIFVVLSAVEDAGVSSSQFEDFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLRV******************F**********
Disordered Region (DISOPRED)
**********GLNPRIVNRRQHF*******************************KYCPPIFV*************************NEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET*
Disordered Region (DISEMBL)
MEIAVKSLSLGLNPRIVNRRQHFDVSTPIISSKRACFLPQTRCDTHNFLKRKNHKYCPPIFVVLSAVEDAGVSSSQFEDFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQETD
Disordered Region (DISPRO)
MEIAVKSLSLGLNPRIVNRRQHFDVSTPIISSKRACFLPQTRCDTHNFLKRKNHKYCPPIFVVLSAVE********FEDFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQ***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIAVKSLSLGLNPRIVNRRQHFDVSTPIISSKRACFLPQTRCDTHNFLKRKNHKYCPPIFVVLSAVEDAGVSSSQFEDFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQETD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
Q7NDP0	461	Trigger factor OS=Gloeoba	yes	no	0.521	0.236	0.275	2e-08
B1XL18	454	Trigger factor OS=Synecho	yes	no	0.511	0.235	0.271	9e-08
Q935Z3	474	Trigger factor OS=Synecho	yes	no	0.535	0.236	0.260	3e-07
Q8DLI3	473	Trigger factor OS=Thermos	yes	no	0.521	0.230	0.284	1e-06
Q5N1P5	474	Trigger factor OS=Synecho	yes	no	0.535	0.236	0.252	1e-06
Q118P4	485	Trigger factor OS=Trichod	yes	no	0.526	0.226	0.256	5e-06
B2IT89	480	Trigger factor OS=Nostoc	yes	no	0.526	0.229	0.264	6e-06
Q3M725	471	Trigger factor OS=Anabaen	yes	no	0.526	0.233	0.239	9e-06
Q8YQX9	471	Trigger factor OS=Nostoc	yes	no	0.526	0.233	0.239	9e-06
B7JW76	455	Trigger factor OS=Cyanoth	yes	no	0.507	0.232	0.238	3e-05

>sp|Q7NDP0|TIG_GLOVI Trigger factor OS=Gloeobacter violaceus (strain PCC 7421) GN=tig PE=3 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 65/116 (56%), Gaps = 7/116 (6%)

Query: 91  TELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNV 150
           +++ + VEV G K++  ++ +    +  A+ IPGFR  K       PR ++L+  G   +
Sbjct: 11  SQMGLNVEVEGEKSKQAYEKLVRDTMRTAR-IPGFRPGKA------PRQLVLQFYGKERL 63

Query: 151 YKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQ 206
             + ++ +ID+++ E +E+E +    +L++  SFE+L   ++P E  SF A + +Q
Sbjct: 64  RAQALENLIDSSLKEAIEQESIASLGNLQLRDSFEELLGRYQPGEPLSFKAAVDVQ 119

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.
Gloeobacter violaceus (strain PCC 7421) (taxid: 251221)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|B1XL18|TIG_SYNP2 Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=tig PE=3 SV=1

 Score = 57.0 bits (136), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 64/114 (56%), Gaps = 7/114 (6%)

Query: 90  ATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTN 149
           A+++ + +EV    T+  +DD   K+      +PGFR+ K      +P+ IL++ LGP  
Sbjct: 10  ASQVGLEIEVPADVTQKAYDDTVRKLARTVN-LPGFRKGK------VPKQILIQRLGPNR 62

Query: 150 VYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVI 203
           +   V++ +ID ++   + +E+++   + +++ SF+DL   ++P E  SF A +
Sbjct: 63  IKASVLEDLIDDSLKAAIAQENIEALGNFQLKSSFDDLISAYKPGEASSFKAAV 116

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q935Z3|TIG_SYNE7 Trigger factor OS=Synechococcus elongatus (strain PCC 7942) GN=tig PE=3 SV=1

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 7/119 (5%)

Query: 90  ATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTN 149
           A+ + + +EVSG ++R +++    ++    +  PGFR  K      +PR +L++ LG T 
Sbjct: 12  ASRVGLQIEVSGEQSRQVYERTLTRLSREVR-FPGFRPGK------VPRPVLIQRLGETA 64

Query: 150 VYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET 208
           +    I+ ++  ++   + +E +    + ++   FE L   F+P E FSF+A + +Q T
Sbjct: 65  LKANAIEDLVQQSLESAIAQESIPAIGNYQLSSDFETLVAAFQPGESFSFEASVDVQPT 123

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8DLI3|TIG_THEEB Trigger factor OS=Thermosynechococcus elongatus (strain BP-1) GN=tig PE=3 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 7/116 (6%)

Query: 84  TTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLE 143
           TT     ++L   +EVSG  ++ +++ V + ++   Q +PGFR+ K       PR ++L+
Sbjct: 2   TTEPRSNSQLLATIEVSGTHSQQVYNQVVNDLLRHTQ-VPGFRKGKA------PRQLVLQ 54

Query: 144 VLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSF 199
            LG   +    ++K+I+  V   VEK ++    +L +     +L   F P E FSF
Sbjct: 55  QLGRERLRYLAMEKLIEDAVKTAVEKNNIPYLGNLELAGGITELLDQFHPGENFSF 110

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5N1P5|TIG_SYNP6 Trigger factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tig PE=3 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 7/119 (5%)

Query: 90  ATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTN 149
           A+ + + +EVSG ++R +++    ++    +  PGFR  K      +PR +L++ LG T 
Sbjct: 12  ASRVGLQIEVSGEQSRQVYERTLTRLSREVR-FPGFRPGK------VPRPVLIQRLGETA 64

Query: 150 VYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET 208
           +    I+ ++  ++   + +E +    + ++   FE L   F+P + FSF+A + +Q T
Sbjct: 65  LKANAIEDLVQQSLESAIAQESIPAIGNYQLSSDFETLVAAFQPGKSFSFEASVDVQPT 123

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q118P4|TIG_TRIEI Trigger factor OS=Trichodesmium erythraeum (strain IMS101) GN=tig PE=3 SV=1

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 65/117 (55%), Gaps = 7/117 (5%)

Query: 90  ATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTN 149
           A+++ + +E+S   ++  ++ +  K + +A  IPGFR+ K      +PR+IL++ LG   
Sbjct: 10  ASQISLEIEISPEMSKNAYEQIIKKYIRSAN-IPGFRKGK------VPRNILIQRLGKNY 62

Query: 150 VYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQ 206
           +    +  +I+  + +  E+E +K      ++  FE+L K FEP ++ +F A + ++
Sbjct: 63  IKAMALDDLINNCLEKAREQESIKAIGQFELKTEFEELVKDFEPGKEMAFSAKVDVE 119

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|B2IT89|TIG_NOSP7 Trigger factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=tig PE=3 SV=1

 Score = 50.8 bits (120), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 63/117 (53%), Gaps = 7/117 (5%)

Query: 90  ATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTN 149
           A+++ + +E++   T+  ++ V   + + A  IPGFRR K      +PR ILL+ LG T 
Sbjct: 10  ASQIGLEIEITPEITKQTYEQVIKNLASTAN-IPGFRRGK------VPRPILLQRLGTTR 62

Query: 150 VYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQ 206
           +    ++++I   + + V++E +      ++  SFEDL   +EP +  +  A + ++
Sbjct: 63  IKAAALEELIQDGIEQAVKQEAIPAIGQPQLRSSFEDLINNYEPGKPLTILAAVDVE 119

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q3M725|TIG_ANAVT Trigger factor OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tig PE=3 SV=1

 Score = 50.4 bits (119), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 65/117 (55%), Gaps = 7/117 (5%)

Query: 90  ATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTN 149
           A+++ + +E++   T+  ++ V  K ++    IPGFR+ K      +PR +LL+ LG T+
Sbjct: 10  ASQIGLEIEITPEITQKTYEQVI-KNLSRTVNIPGFRKGK------VPRQVLLQRLGKTH 62

Query: 150 VYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQ 206
           +    +++++   + + +++E +      R+  SF+DL   +EP +  +F A + ++
Sbjct: 63  IKAAALEELLQDGIEQAIKQESIAAIGQPRLRSSFDDLINSYEPGQPLTFTAAVDVE 119

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8YQX9|TIG_NOSS1 Trigger factor OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=tig PE=3 SV=1

 Score = 50.4 bits (119), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 65/117 (55%), Gaps = 7/117 (5%)

Query: 90  ATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTN 149
           A+++ + +E++   T+  ++ V  K ++    IPGFR+ K      +PR +LL+ LG T+
Sbjct: 10  ASQIGLEIEITPEITQKTYEQVI-KNLSRTVNIPGFRKGK------VPRQVLLQRLGKTH 62

Query: 150 VYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQ 206
           +    +++++   + + +++E +      R+  SF+DL   +EP +  +F A + ++
Sbjct: 63  IKAAALEELLQDGIEQAIKQESIAAIGQPRLRSSFDDLINSYEPGQPLTFTAAVDVE 119

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|B7JW76|TIG_CYAP8 Trigger factor OS=Cyanothece sp. (strain PCC 8801) GN=tig PE=3 SV=1

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 62/113 (54%), Gaps = 7/113 (6%)

Query: 91  TELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNV 150
           +++ + +E+S   ++  ++   + +   A  IPGFR+ K      +PR ILL+ +G   +
Sbjct: 11  SQIGLEIEISAEASKKAYETKVNTLARTAN-IPGFRKGK------VPRQILLQRIGTEYI 63

Query: 151 YKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVI 203
               ++++I+ ++   +++E L+   D  ++  F++L + F+P E  +F A I
Sbjct: 64  KATTLQELIEDSLKAAIKQESLESIGDFELKSKFDELVQQFKPGEPLTFSAAI 116

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
296084277	206	unnamed protein product [Vitis vinifera]	0.976	0.990	0.652	1e-68
225434088	212	PREDICTED: trigger factor-like [Vitis vi	0.976	0.962	0.633	5e-67
330318613	209	hypothetical protein [Camellia sinensis]	1.0	1.0	0.602	1e-63
449445672	208	PREDICTED: trigger factor-like [Cucumis	0.990	0.995	0.590	7e-61
255579454	187	conserved hypothetical protein [Ricinus	0.755	0.844	0.725	2e-58
359806783	204	uncharacterized protein LOC100798146 [Gl	0.971	0.995	0.572	5e-54
357455963	201	Trigger factor [Medicago truncatula] gi|	0.952	0.990	0.541	3e-50
224121812	116	predicted protein [Populus trichocarpa]	0.550	0.991	0.852	3e-48
297826485	199	hypothetical protein ARALYDRAFT_902063 [	0.703	0.738	0.591	2e-44
18402430	199	uncharacterized protein [Arabidopsis tha	0.937	0.984	0.466	2e-43

>gi|296084277|emb|CBI24665.3| unnamed protein product [Vitis vinifera]

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 135/207 (65%), Positives = 157/207 (75%), Gaps = 3/207 (1%)

Query: 1   MEIAVKSLSLGLNPRIVNRRQHFDVSTPIISSKRACFLPQTRCDTHNFLKRKNHKYCPPI 60
           MEIAV  LS GLNP++++ +Q      P   S R C   Q + +T  F  R  HKYCP +
Sbjct: 1   MEIAVNPLSWGLNPKMIHHKQ---TVLPNFFSIRPCCSLQMKYNTQAFRVRAIHKYCPAV 57

Query: 61  FVVLSAVEDAGVSSSQFEDFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQ 120
             V S V+D GVSSSQFEDF V+ T T  A ELKI VE+SG KTR IFD+VF KMVA AQ
Sbjct: 58  CAVSSGVKDPGVSSSQFEDFSVTATSTGNAKELKISVELSGVKTRTIFDNVFSKMVADAQ 117

Query: 121 PIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLRV 180
           PIPGFRRVKGGKTP+IPRDILLEVLGP+ VY +VIKKVI++TVAE+VEKE +KVSKDLRV
Sbjct: 118 PIPGFRRVKGGKTPDIPRDILLEVLGPSKVYMQVIKKVINSTVAEYVEKEGIKVSKDLRV 177

Query: 181 EQSFEDLEKLFEPDEKFSFDAVIKLQE 207
           EQSFEDLE  FEP E+F FDAV++LQE
Sbjct: 178 EQSFEDLEDAFEPGEEFRFDAVVQLQE 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434088|ref|XP_002273660.1| PREDICTED: trigger factor-like [Vitis vinifera]

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 135/213 (63%), Positives = 157/213 (73%), Gaps = 9/213 (4%)

Query: 1   MEIAVKSLSLGLNPRIVNRRQHFDVSTPIISSKRACFLPQTRCDTHNFL------KRKNH 54
           MEIAV  LS GLNP++++ +Q      P   S R C   Q + +T  F        R  H
Sbjct: 1   MEIAVNPLSWGLNPKMIHHKQ---TVLPNFFSIRPCCSLQMKYNTQAFRVSASLSYRAIH 57

Query: 55  KYCPPIFVVLSAVEDAGVSSSQFEDFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDK 114
           KYCP +  V S V+D GVSSSQFEDF V+ T T  A ELKI VE+SG KTR IFD+VF K
Sbjct: 58  KYCPAVCAVSSGVKDPGVSSSQFEDFSVTATSTGNAKELKISVELSGVKTRTIFDNVFSK 117

Query: 115 MVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKV 174
           MVA AQPIPGFRRVKGGKTP+IPRDILLEVLGP+ VY +VIKKVI++TVAE+VEKE +KV
Sbjct: 118 MVADAQPIPGFRRVKGGKTPDIPRDILLEVLGPSKVYMQVIKKVINSTVAEYVEKEGIKV 177

Query: 175 SKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQE 207
           SKDLRVEQSFEDLE  FEP E+F FDAV++LQE
Sbjct: 178 SKDLRVEQSFEDLEDAFEPGEEFRFDAVVQLQE 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|330318613|gb|AEC10971.1| hypothetical protein [Camellia sinensis]

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 126/209 (60%), Positives = 159/209 (76%)

Query: 1   MEIAVKSLSLGLNPRIVNRRQHFDVSTPIISSKRACFLPQTRCDTHNFLKRKNHKYCPPI 60
           ME+A K+L LG N +I+  +Q+ DV  P +SSKR  F  Q R +   F +R   K    +
Sbjct: 1   MEVAFKTLFLGFNSKIIRPKQNVDVLIPNLSSKRESFPLQMRYNAIKFRERACTKNLLAV 60

Query: 61  FVVLSAVEDAGVSSSQFEDFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQ 120
             V S VED  V SSQF+DF V+ + T++A+ELKI VEVSG KT++IFDDVF KMVA AQ
Sbjct: 61  CAVSSGVEDNEVLSSQFQDFSVAASGTSKASELKISVEVSGTKTQSIFDDVFSKMVADAQ 120

Query: 121 PIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLRV 180
           PIPGFRR+KGGKTP+IP +ILL+VLGP+ VYK+VI KVI++T+AE+VEKE L VSKDLRV
Sbjct: 121 PIPGFRRLKGGKTPDIPTEILLQVLGPSKVYKQVITKVINSTIAEYVEKEGLTVSKDLRV 180

Query: 181 EQSFEDLEKLFEPDEKFSFDAVIKLQETD 209
           EQSFEDLE +FEP ++FSFD V+KLQE +
Sbjct: 181 EQSFEDLEAMFEPGDQFSFDVVVKLQELN 209

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445672|ref|XP_004140596.1| PREDICTED: trigger factor-like [Cucumis sativus] gi|449487315|ref|XP_004157566.1| PREDICTED: trigger factor-like [Cucumis sativus]

 Score =  239 bits (609), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 124/210 (59%), Positives = 154/210 (73%), Gaps = 3/210 (1%)

Query: 1   MEIAVKSLSLGLNPRIVNRRQHFDVSTPIISSKRACFLPQTRCDTHNFLKRKNHKYCPPI 60
           M+IA  +  L +NP+ +  +Q  D  TP ++     F  Q R  +      KN++Y P  
Sbjct: 1   MQIAAANFFLSVNPKAIYHKQTTDYFTPNLTCIGVSFPSQIRYGSRKISLSKNNRYLPAA 60

Query: 61  FVVLSAVEDAGVSSSQFEDF-VVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAA 119
             VLS  E+  VSSSQFEDF V + T T E  ELKI VEVSGAKTRAIF+ VFD+MVA A
Sbjct: 61  CAVLS--ENVSVSSSQFEDFSVTNVTNTKENKELKIRVEVSGAKTRAIFNVVFDRMVAEA 118

Query: 120 QPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLR 179
           QPIPGFRRVKGGKTPNIPRDILLE+LGP+ VYK+VIK+VI++TVA +VEKE LKV KDLR
Sbjct: 119 QPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKEVINSTVAAYVEKEALKVGKDLR 178

Query: 180 VEQSFEDLEKLFEPDEKFSFDAVIKLQETD 209
           ++QS+EDLE  FEPDE F FDA+I+L+E++
Sbjct: 179 IDQSYEDLEDQFEPDENFFFDAIIQLKESN 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579454|ref|XP_002530570.1| conserved hypothetical protein [Ricinus communis] gi|223529869|gb|EEF31800.1| conserved hypothetical protein [Ricinus communis]

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 116/160 (72%), Positives = 137/160 (85%), Gaps = 2/160 (1%)

Query: 52  KNHKYCPPIFVVLSAVEDAGV--SSSQFEDFVVSTTRTNEATELKIGVEVSGAKTRAIFD 109
           +NH+   P+  VLS ++D GV  SSSQFE F V  + TNE  EL+I VEVSG KTRAIFD
Sbjct: 28  ENHRCLTPVCAVLSDMQDIGVGASSSQFEQFSVMASSTNEPRELRISVEVSGVKTRAIFD 87

Query: 110 DVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEK 169
           +VF+KMVAAAQPIPGFRRVKGGKTP+IPRDILLEVLGP+ VYKEVIKKVI++TVA++VEK
Sbjct: 88  NVFEKMVAAAQPIPGFRRVKGGKTPDIPRDILLEVLGPSKVYKEVIKKVINSTVAKYVEK 147

Query: 170 EDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQETD 209
           E LKVSKDLR+EQSFEDLE+ FEPD KFSFDAVI+L +++
Sbjct: 148 EGLKVSKDLRIEQSFEDLEETFEPDAKFSFDAVIQLLKSE 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806783|ref|NP_001241304.1| uncharacterized protein LOC100798146 [Glycine max] gi|255646296|gb|ACU23632.1| unknown [Glycine max]

 Score =  216 bits (549), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 119/208 (57%), Positives = 148/208 (71%), Gaps = 5/208 (2%)

Query: 1   MEIAVKSLSLGLNPRIVNRRQH-FDVSTPIISSKRACFLPQTRCDTHNFLKRKNHKYCPP 59
           M  A ++  L L P++   +Q   +   P ++ +      + R    N L+R+  K C P
Sbjct: 1   MNAASQTFILNLTPQVATCKQRVHEFIVPSLNCRHFGLSWKLRHGARNILRREYIK-CLP 59

Query: 60  IFVVLSAVEDAGVSSSQFEDFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAA 119
              VLS   DA +SS QFEDF VS    N+++ELKI VEVSG KT+ IFDDVF KMVAAA
Sbjct: 60  TADVLS---DAQISSDQFEDFSVSVADNNDSSELKISVEVSGNKTQRIFDDVFKKMVAAA 116

Query: 120 QPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLR 179
           QPIPGFRRVKGGKTP+IP++ILLEVLGP+ V+ EVIKK+I++TVAE+VEKE L VSKDLR
Sbjct: 117 QPIPGFRRVKGGKTPDIPKNILLEVLGPSKVFNEVIKKIINSTVAEYVEKECLIVSKDLR 176

Query: 180 VEQSFEDLEKLFEPDEKFSFDAVIKLQE 207
           VEQSFEDLE  FE  EKFSFD V++LQ+
Sbjct: 177 VEQSFEDLETTFEEGEKFSFDVVLELQK 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455963|ref|XP_003598262.1| Trigger factor [Medicago truncatula] gi|355487310|gb|AES68513.1| Trigger factor [Medicago truncatula]

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 112/207 (54%), Positives = 143/207 (69%), Gaps = 8/207 (3%)

Query: 1   MEIAVKSLSLGLNPRIVNRRQHF-DVSTPIISSKRACFLPQTRCDTHNFLKRKNHKYCPP 59
           M    +S  L L P+++  RQ   D  +   +S   C   + R      LKR+  + C P
Sbjct: 1   MHTLSQSFILNLTPQMIRHRQRVEDFVSCSSNSSHFCHSLKHRHSAMRILKREQSR-CLP 59

Query: 60  IFVVLSAVEDAGVSSSQFEDFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAA 119
              VLS   D  +SS++FE+F VST  T++  E+KI +EVSG +T+  FDDVF KMV AA
Sbjct: 60  TASVLS---DTEISSARFEEFSVSTVDTDDVGEIKISIEVSGNRTQRTFDDVFQKMVEAA 116

Query: 120 QPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLR 179
           QPIPGFRRVKGG+   IP+DILLEVLGP+NV+K+VIK++I++TVAE+VEKE LKVS DLR
Sbjct: 117 QPIPGFRRVKGGE---IPKDILLEVLGPSNVFKQVIKEIINSTVAEYVEKESLKVSSDLR 173

Query: 180 VEQSFEDLEKLFEPDEKFSFDAVIKLQ 206
           VEQSFEDLE  FE  EKFSFD V++LQ
Sbjct: 174 VEQSFEDLETTFEAGEKFSFDIVLQLQ 200

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121812|ref|XP_002330659.1| predicted protein [Populus trichocarpa] gi|222872263|gb|EEF09394.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/115 (85%), Positives = 108/115 (93%)

Query: 94  KIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKE 153
           +I VEVSGAKTRAIF+DVF KMV AAQPIPGFRRVKGGKTP+IPRDILLEVLGP+ VYKE
Sbjct: 1   QIRVEVSGAKTRAIFEDVFKKMVTAAQPIPGFRRVKGGKTPDIPRDILLEVLGPSKVYKE 60

Query: 154 VIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET 208
           VIKKVI++TVAE+V+KE LKVSKDLRVEQSFEDLE  FEPDEKFSFDAVI+LQ+T
Sbjct: 61  VIKKVINSTVAEYVDKEGLKVSKDLRVEQSFEDLEDAFEPDEKFSFDAVIQLQQT 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826485|ref|XP_002881125.1| hypothetical protein ARALYDRAFT_902063 [Arabidopsis lyrata subsp. lyrata] gi|297326964|gb|EFH57384.1| hypothetical protein ARALYDRAFT_902063 [Arabidopsis lyrata subsp. lyrata]

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/147 (59%), Positives = 118/147 (80%)

Query: 61  FVVLSAVEDAGVSSSQFEDFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQ 120
           F+ +SA      +SS+ E F+V+   T    E+K+ V+VSG KT+ +F+ VF+KMVAAAQ
Sbjct: 51  FIAVSAAPSDVETSSKDESFLVTKVETKNINEVKVHVQVSGEKTKTVFNHVFEKMVAAAQ 110

Query: 121 PIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLRV 180
           PIPGFRRVKGGKTPNIPRD+LLE+LG + VY++VIKK+I++ + ++V++ED+KV K+L V
Sbjct: 111 PIPGFRRVKGGKTPNIPRDVLLEILGYSKVYRQVIKKLINSAIEDYVKQEDVKVGKELTV 170

Query: 181 EQSFEDLEKLFEPDEKFSFDAVIKLQE 207
           EQS+EDLE+ FEP E FSFDA+IKLQE
Sbjct: 171 EQSYEDLEETFEPGESFSFDAIIKLQE 197

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402430|ref|NP_565704.1| uncharacterized protein [Arabidopsis thaliana] gi|42570989|ref|NP_973568.1| uncharacterized protein [Arabidopsis thaliana] gi|15724150|gb|AAL06467.1|AF411777_1 At2g30700/T11J7.9 [Arabidopsis thaliana] gi|20196902|gb|AAM14829.1| Expressed protein [Arabidopsis thaliana] gi|20334858|gb|AAM16185.1| At2g30700/T11J7.9 [Arabidopsis thaliana] gi|330253334|gb|AEC08428.1| uncharacterized protein [Arabidopsis thaliana] gi|330253335|gb|AEC08429.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/208 (46%), Positives = 135/208 (64%), Gaps = 12/208 (5%)

Query: 1   MEIAVKSLSL-GLNPRIVNRRQHFDVSTPIISSKRACFLPQTRCDTHNFLKRKNHKYCPP 59
           M+  + SLS    N   +N +  F  S+ +        LP T         R  ++    
Sbjct: 1   MQTIIHSLSFCSFNSTTINPKPRFQFSSFLT-------LPPTYSVQQKLCTRATNRQ--- 50

Query: 60  IFVVLSAVEDAGVSSSQFEDFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAA 119
            FV + A      +SS+ E  +++   T  + E+K+ V+VSG KT+ +F+ VF+KMVAAA
Sbjct: 51  -FVAVCAAPSDVETSSKDESVLITKVETETSNEVKVHVQVSGEKTQTVFNHVFEKMVAAA 109

Query: 120 QPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLR 179
           QPIPGFRRVKGGKTPNIP+D+LLE+LG + VYK+VIKK+I++ + ++V++EDLKV K+L 
Sbjct: 110 QPIPGFRRVKGGKTPNIPKDVLLEILGYSKVYKQVIKKLINSAIEDYVKQEDLKVGKELT 169

Query: 180 VEQSFEDLEKLFEPDEKFSFDAVIKLQE 207
           V QS+EDLE+ FEP E FSFDA IKLQE
Sbjct: 170 VVQSYEDLEETFEPGESFSFDATIKLQE 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:505006279	199	AT2G30695 "AT2G30695" [Arabido	0.937	0.984	0.466	1.9e-42

TAIR|locus:505006279 AT2G30695 "AT2G30695" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 97/208 (46%), Positives = 135/208 (64%)

Query:     1 MEIAVKSLSL-GLNPRIVNRRQHFDVSTPIISSKRACFLPQTRCDTHNFLKRKNHKYCPP 59
             M+  + SLS    N   +N +  F  S+ +        LP T         R  ++    
Sbjct:     1 MQTIIHSLSFCSFNSTTINPKPRFQFSSFLT-------LPPTYSVQQKLCTRATNRQ--- 50

Query:    60 IFVVLSAVEDAGVSSSQFEDFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAA 119
              FV + A      +SS+ E  +++   T  + E+K+ V+VSG KT+ +F+ VF+KMVAAA
Sbjct:    51 -FVAVCAAPSDVETSSKDESVLITKVETETSNEVKVHVQVSGEKTQTVFNHVFEKMVAAA 109

Query:   120 QPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLR 179
             QPIPGFRRVKGGKTPNIP+D+LLE+LG + VYK+VIKK+I++ + ++V++EDLKV K+L 
Sbjct:   110 QPIPGFRRVKGGKTPNIPKDVLLEILGYSKVYKQVIKKLINSAIEDYVKQEDLKVGKELT 169

Query:   180 VEQSFEDLEKLFEPDEKFSFDAVIKLQE 207
             V QS+EDLE+ FEP E FSFDA IKLQE
Sbjct:   170 VVQSYEDLEETFEPGESFSFDATIKLQE 197


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      209       209   0.00079  112 3  11 22  0.36    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  557 (59 KB)
  Total size of DFA:  143 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.29u 0.07s 19.36t   Elapsed:  00:00:05
  Total cpu time:  19.29u 0.07s 19.36t   Elapsed:  00:00:05
  Start:  Mon May 20 17:33:49 2013   End:  Mon May 20 17:33:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0006457 "protein folding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
pfam05697	145	pfam05697, Trigger_N, Bacterial trigger factor pro	8e-07
COG0544	441	COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans	2e-06
TIGR00115	408	TIGR00115, tig, trigger factor	4e-06
PRK01490	435	PRK01490, tig, trigger factor; Provisional	6e-06

>gnl|CDD|218700 pfam05697, Trigger_N, Bacterial trigger factor protein (TF)

 Score = 46.4 bits (111), Expect = 8e-07
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 14/120 (11%)

Query: 84  TTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLE 143
           T    E  E+K+ VEV   +     D    ++    + IPGFR+   GK   +PR ++ +
Sbjct: 4   TVEKLEGLEVKLTVEVPAEEVEEAVDKALKELAKKVK-IPGFRK---GK---VPRSVVKK 56

Query: 144 VLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVI 203
             G   +Y+E ++ ++     E +++E L+      +E      E   E  + F F A  
Sbjct: 57  RYGK-EIYQEALEDLLQEAYEEALKEEKLEPIGQPEIE------EVELEDGKDFEFTAEF 109

In the E. coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains. This family represents the N-terminal region of the protein. Length = 145

>gnl|CDD|223618 COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 14/117 (11%)

Query: 87  TNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLG 146
             E  E+++ VEV   + +   D    K+    + IPGFR+   GK   +PR ++ +  G
Sbjct: 7   KLEGLEVRLTVEVPAEEIKKALDKALKKLAKKVK-IPGFRK---GK---VPRKVIEQRYG 59

Query: 147 PTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVI 203
              V ++V+ +++     E +++E LK        Q   ++ + FE  E F F A +
Sbjct: 60  -EAVRQDVLNELLPEAFEEAIKEEGLKP-----AGQPEIEITE-FEKGEDFEFTAEV 109

Length = 441

>gnl|CDD|232831 TIGR00115, tig, trigger factor

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 14/108 (12%)

Query: 94  KIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKE 153
           K+ VEV   +     D    ++    + IPGFR+   GK   +PR ++ +  G   V +E
Sbjct: 2   KLTVEVPAEEVEEEVDKALKELAKTVK-IPGFRK---GK---VPRSVVEKRYGK-EVRQE 53

Query: 154 VIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDA 201
            + +++    +E V++E ++      +E       K  E  +   F A
Sbjct: 54  ALNELLQEAFSEAVKEEKIRPIGQPEIE------VKELEDGKDLEFTA 95

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome [Protein fate, Protein folding and stabilization]. Length = 408

>gnl|CDD|234956 PRK01490, tig, trigger factor; Provisional

 Score = 45.5 bits (109), Expect = 6e-06
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 14/121 (11%)

Query: 83  STTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILL 142
            T    E  E ++ + V   +     D    K+    + IPGFR+   GK   +PR I+ 
Sbjct: 3   VTVEKLEGLERRLTITVPAEEIEKAVDKALKKLAKTVR-IPGFRK---GK---VPRKIVE 55

Query: 143 EVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAV 202
           +  G  +V +E +  ++     E +++E ++ +    +E          E  +   F A 
Sbjct: 56  QRYGE-SVRQEALNDLLPEAYEEAIKEEGIRPAGQPEIE------PTEEEKGKDLEFTAE 108

Query: 203 I 203
           +
Sbjct: 109 V 109

Length = 435

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
PF05697	145	Trigger_N: Bacterial trigger factor protein (TF);	99.94
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	99.9
PRK01490	435	tig trigger factor; Provisional	99.89
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	99.85

>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state

Probab=99.94  E-value=3.8e-26  Score=183.56  Aligned_cols=114  Identities=25%  Similarity=0.484  Sum_probs=101.0

Q ss_pred             eeeEEEeeCCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhhChhHHHHHHHHHHH
Q 028445           80 FVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVI  159 (209)
Q Consensus        80 ~~v~v~e~~~~~~i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~G~~~V~~eai~~lI  159 (209)
                      |++++ +..+++++.++|+|++++++++++++++++++++ +||||||||      ||+++++++||.+ |+++++++++
T Consensus         1 M~v~~-~~~~~~~~~~~v~v~~~~~~~~~~~~l~~~~k~~-~ipGFRkGK------~P~~vi~~~~g~~-i~~~~~~~~~   71 (145)
T PF05697_consen    1 MKVTV-EKIEDSKVKLEVEVPAEEVEKAYEKALKELAKKV-KIPGFRKGK------APRNVIEKRYGKE-IREEAIEELL   71 (145)
T ss_dssp             -EEEE-EEESTTEEEEEEEE-HHHHHHHHHHHHHHHHTTT-TBTTS-TTS------S-HHHHHHHHCHH-HHHHHHHHHH
T ss_pred             CccEE-EECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhC-CCCCCCCCC------CCHHHHHHHHHHH-HHHHHHHHHH
Confidence            67888 8889999999999999999999999999999999 799999999      9999999999996 9999999999


Q ss_pred             HHHHHHHHHhcCCcccCcccccchhhhhhhccCCCCceEEEEEEEeeeC
Q 028445          160 DTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET  208 (209)
Q Consensus       160 ~~~~~ealeee~L~pi~~P~i~~~~e~l~~~f~~g~~f~F~v~vev~~~  208 (209)
                      +.++.+|+++++++|++.|.+.      ...+++|++|+|+++|++.|.
T Consensus        72 ~~~~~~~~~~~~~~~i~~p~i~------~~~~~~~~~~~~~~~~~~~Pe  114 (145)
T PF05697_consen   72 QEAYEEAIKEEKIKPIGDPEIE------EKDFKEGEDFEFEVEFEVFPE  114 (145)
T ss_dssp             HHHHHHHHHHTTS-ESSEEEEE------EEEEETTS-EEEEEEEEE--E
T ss_pred             HHHHHHHHHHcCCCcccccccc------ccccccCCCEEEEEEEEecCC
Confidence            9999999999999999999885      367899999999999999763

The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.1e-23  Score=196.09  Aligned_cols=114  Identities=26%  Similarity=0.491  Sum_probs=107.9

Q ss_pred             eeeEEEeeCCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhhChhHHHHHHHHHHH
Q 028445           80 FVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVI  159 (209)
Q Consensus        80 ~~v~v~e~~~~~~i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~G~~~V~~eai~~lI  159 (209)
                      |++++ ++++++.+.++|+||++.++..++++|+++++++ +||||||||      ||+++++++|| ..|++++++++|
T Consensus         1 M~v~~-e~~~~~~~~l~v~vp~~~~~~~~~~~~~~~~k~v-~IpGFRkGK------vP~~ii~~ryg-~~v~~d~~~~ll   71 (441)
T COG0544           1 MKVTV-EKLEGLEVRLTVEVPAEEIKKALDKALKKLAKKV-KIPGFRKGK------VPRKVIEQRYG-EAVRQDVLNELL   71 (441)
T ss_pred             CCeee-eecCCcEEEEEEEECHHHHHHHHHHHHHHHHhhC-cCCCCCCCC------CCHHHHHHHHh-HHHHHHHHHHHH
Confidence            56788 9999999999999999999999999999999999 899999999      99999999999 579999999999


Q ss_pred             HHHHHHHHHhcCCcccCcccccchhhhhhhccCCCCceEEEEEEEeeeC
Q 028445          160 DTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET  208 (209)
Q Consensus       160 ~~~~~ealeee~L~pi~~P~i~~~~e~l~~~f~~g~~f~F~v~vev~~~  208 (209)
                      +++|.+++++++++|+++|.+.      ...+++|++|+|++.|+|.|.
T Consensus        72 ~~~~~~a~~e~~~~~~~~p~~~------~~~~e~~~~~~f~~~~ev~Pe  114 (441)
T COG0544          72 PEAFEEAIKEEGLKPAGQPEIE------ITEFEKGEDFEFTAEVEVYPE  114 (441)
T ss_pred             HHHHHHHHHHhCcCcCCCCCcc------cccccCCCceEEEEEEEEeec
Confidence            9999999999999999999776      367999999999999999874

>PRK01490 tig trigger factor; Provisional

Probab=99.89  E-value=6.8e-23  Score=189.86  Aligned_cols=114  Identities=21%  Similarity=0.399  Sum_probs=107.2

Q ss_pred             eeeEEEeeCCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhhChhHHHHHHHHHHH
Q 028445           80 FVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVI  159 (209)
Q Consensus        80 ~~v~v~e~~~~~~i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~G~~~V~~eai~~lI  159 (209)
                      |++++ +..++++++++|+||+++++..++++++++++++ +||||||||      ||+++|+++||++ |++++++++|
T Consensus         1 M~v~~-~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~-~ipGFRkGk------vP~~ii~k~~g~~-i~~e~~~~li   71 (435)
T PRK01490          1 MQVTV-EKLEGLERRLTITVPAEEIEKAVDKALKKLAKTV-RIPGFRKGK------VPRKIVEQRYGES-VRQEALNDLL   71 (435)
T ss_pred             CcceE-EEcCCcEEEEEEEEcHHHHHHHHHHHHHHHHhhC-cCCCccCCC------CCHHHHHHHHhHH-HHHHHHHHHH
Confidence            56777 8899999999999999999999999999999999 799999999      9999999999985 9999999999


Q ss_pred             HHHHHHHHHhcCCcccCcccccchhhhhhhccCCCCceEEEEEEEeeeC
Q 028445          160 DTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET  208 (209)
Q Consensus       160 ~~~~~ealeee~L~pi~~P~i~~~~e~l~~~f~~g~~f~F~v~vev~~~  208 (209)
                      +++|.+|+++++++|+++|.+..      ..++++++|+|+++|+|.|.
T Consensus        72 ~~~~~~~i~~~~~~~~~~p~i~~------~~~~~~~~~~~~~~~~v~Pe  114 (435)
T PRK01490         72 PEAYEEAIKEEGIRPAGQPEIEP------TEEEKGKDLEFTAEVEVYPE  114 (435)
T ss_pred             HHHHHHHHHHcCCCcCCCCcccc------cccCCCCcEEEEEEeeecCC
Confidence            99999999999999999999973      45788999999999999774

>TIGR00115 tig trigger factor

Probab=99.85  E-value=6e-21  Score=175.38  Aligned_cols=102  Identities=24%  Similarity=0.431  Sum_probs=95.6

Q ss_pred             EEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHhcCC
Q 028445           93 LKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVIDTTVAEFVEKEDL  172 (209)
Q Consensus        93 i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~G~~~V~~eai~~lI~~~~~ealeee~L  172 (209)
                      ++++|+||+++++..++++++++++++ +||||||||      ||+++|+++||++ |+.++++++|++++.+|++++++
T Consensus         1 ~~l~v~v~~~~~~~~~~k~~~~~~k~~-~ipGFRkGK------vP~~~i~k~~g~~-i~~e~~~~li~~~~~~~~~~~~~   72 (408)
T TIGR00115         1 RKLTVEVPAEEVEEEVDKALKELAKKV-KIPGFRKGK------VPRSVVEKRYGKE-VRQEALNELLQEAFSEAVKEEKI   72 (408)
T ss_pred             CeEEEEECHHHHHHHHHHHHHHHHhhC-CCCCccCCC------CCHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHhCCC
Confidence            368999999999999999999999999 799999999      9999999999985 99999999999999999999999


Q ss_pred             cccCcccccchhhhhhhccCCCCceEEEEEEEeeeC
Q 028445          173 KVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET  208 (209)
Q Consensus       173 ~pi~~P~i~~~~e~l~~~f~~g~~f~F~v~vev~~~  208 (209)
                      +|+++|.+..      ..+++|++|+|+++|++.|.
T Consensus        73 ~~~~~p~~~~------~~~~~~~~~~~~~~~~v~Pe  102 (408)
T TIGR00115        73 RPIGQPEIEV------KEIEDGKDLEFTAEFEVYPE  102 (408)
T ss_pred             CcCCCCcccc------ccccCCCCEEEEEEEEecCc
Confidence            9999999862      46788999999999999774

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
2d3o_1	112	Trigger factor, TF; ribosome, nascent chain, prote	2e-08
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	8e-05

>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7 Length = 112

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 22/122 (18%), Positives = 53/122 (43%), Gaps = 14/122 (11%)

Query: 82  VSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDIL 141
           ++   + E  +++  V V  A+    +D V+  +    + +PGFR    GK    PR ++
Sbjct: 1   MAELISKEGNKVEFKVSVPAAEVNRAYDQVWAGLARDVR-VPGFRP---GK---APRKVI 53

Query: 142 LEVLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDA 201
              +G   V  +V  ++++T  ++ + +  L +     V+ + +  +   +  + F F  
Sbjct: 54  ENRVGKGYVESQVRDRLLETHYSQGLRELGLNL-----VDATVDPQD--VQSGQAFEFTV 106

Query: 202 VI 203
             
Sbjct: 107 KG 108

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.7 bits (94), Expect = 8e-05
 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 11/39 (28%)

Query: 168 EKEDLKVSKDLRVEQSFEDLEKLFEPDE--KFSFDAVIK 204
           EK+ LK     +++ S     KL+  D     +  A ++
Sbjct: 18  EKQALK-----KLQASL----KLYADDSAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
1p9y_A	121	Trigger factor, TF; alpha-beta protein, isomerase;	99.97
2d3o_1	112	Trigger factor, TF; ribosome, nascent chain, prote	99.96
2nsc_A	109	Trigger factor, TF; chaperone; 2.20A {Thermotoga m	99.95
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.93
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.92
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	99.83

>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*

Probab=99.97  E-value=3.5e-30  Score=202.18  Aligned_cols=115  Identities=14%  Similarity=0.288  Sum_probs=108.5

Q ss_pred             ceeeEEEeeCCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhhChhHHHHHHHHHH
Q 028445           79 DFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKV  158 (209)
Q Consensus        79 ~~~v~v~e~~~~~~i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~G~~~V~~eai~~l  158 (209)
                      .|++++ ++.++++++|+|+||+++++++++++|+++++++ +||||||||      ||+++|+++||+ .|++++++++
T Consensus         3 ~M~v~~-e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~v-~ipGFRkGK------vP~~vi~k~yG~-~v~~ea~~~~   73 (121)
T 1p9y_A            3 HMQVSV-ETTQGLGRRVTITIAADSIETAVKSELVNVAKKV-RIDGLRKGK------VPMNIVAQRYGA-SVRQDVLGDL   73 (121)
T ss_dssp             -CEEEE-EECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTC-CCTTSCTTC------SCHHHHHHHHHH-HHHHHHHHHH
T ss_pred             cceEEE-EECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhC-ccCCcCCCC------CCHHHHHHHHHH-HHHHHHHHHH
Confidence            488999 9999999999999999999999999999999999 799999999      999999999998 5999999999


Q ss_pred             HHHHHHHHHHhcCCcccCcccccchhhhhhhccCCCCceEEEEEEEeeeC
Q 028445          159 IDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET  208 (209)
Q Consensus       159 I~~~~~ealeee~L~pi~~P~i~~~~e~l~~~f~~g~~f~F~v~vev~~~  208 (209)
                      |+++|.+|+++++|+|+++|.++.      ..+++|++|+|+++|+|.|.
T Consensus        74 i~~~~~~ai~e~~l~~~~~P~i~~------~~~~~~~~~~f~~~~ev~Pe  117 (121)
T 1p9y_A           74 MSRNFIDAIIKEKINPAGAPTYVP------GEYKLGEDFTYSVEFEVYPE  117 (121)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEEEEE------CCCCSSSCEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCCCCCcccc------cccCCCCCEEEEEEEEEcCc
Confidence            999999999999999999999873      45888999999999999874

>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7

Probab=99.96  E-value=1.8e-30  Score=201.21  Aligned_cols=112  Identities=19%  Similarity=0.317  Sum_probs=96.0

Q ss_pred             eeeEEEeeCCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhhChhHHHHHHHHHHH
Q 028445           80 FVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVI  159 (209)
Q Consensus        80 ~~v~v~e~~~~~~i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~G~~~V~~eai~~lI  159 (209)
                      |++++ ++ ++++++|+|+||+++++++++++|+++++++ +||||||||      ||+++|+++||++.|++++++++|
T Consensus         1 M~v~~-e~-~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~-~ipGFRkGK------vP~~vi~k~yG~~~v~~ea~~~~i   71 (112)
T 2d3o_1            1 MAELI-SK-EGNKVEFKVSVPAAEVNRAYDQVWAGLARDV-RVPGFRPGK------APRKVIENRVGKGYVESQVRDRLL   71 (112)
T ss_dssp             -----------CCEEEEECCCGGGTHHHHHHHHHHHHTTS-CBTTBCTTC------CCSTTHHHHTTTTSSHHHHHHHHH
T ss_pred             CceEE-Ec-CCcEEEEEEEECHHHHHHHHHHHHHHHHhhC-CCCCcCCCC------CCHHHHHHHhCHHHHHHHHHHHHH
Confidence            56777 88 9999999999999999999999999999999 799999999      999999999995579999999999


Q ss_pred             HHHHHHHHHhcCCcccCcccccchhhhhhhccCCCCceEEEEEEEeee
Q 028445          160 DTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQE  207 (209)
Q Consensus       160 ~~~~~ealeee~L~pi~~P~i~~~~e~l~~~f~~g~~f~F~v~vev~~  207 (209)
                      +++|.+|+++++|+|+++|.++.      . +++|++|+|+++|+|.|
T Consensus        72 ~~~~~~ai~e~~l~~~~~P~i~~------~-~~~~~~~~f~~~~ev~P  112 (112)
T 2d3o_1           72 ETHYSQGLRELGLNLVDATVDPQ------D-VQSGQAFEFTVKGETYP  112 (112)
T ss_dssp             HHHHHHHHHHSCCCCCCEECCCC------C-CCSSSCCCEEEEEC---
T ss_pred             HHHHHHHHHHcCCCCCCCCcccc------c-ccCCCCEEEEEEEEecC
Confidence            99999999999999999999862      4 88899999999999975

>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A

Probab=99.95  E-value=6.1e-29  Score=191.77  Aligned_cols=109  Identities=15%  Similarity=0.239  Sum_probs=102.3

Q ss_pred             eeeEEEeeCCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhhChhHHHHHHHHHHH
Q 028445           80 FVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVI  159 (209)
Q Consensus        80 ~~v~v~e~~~~~~i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~G~~~V~~eai~~lI  159 (209)
                      |++++ ++.++++++|+|+||+++++++++++|+++++++ +||||||||      ||+++|+++||+ .|++++++++|
T Consensus         1 M~v~~-e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~-~ipGFRkGK------vP~~vi~k~yG~-~v~~ea~~~~i   71 (109)
T 2nsc_A            1 MEVKE-LERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRV-EIPGFRKGR------IPKNVLKMKLGE-EFQEYTLDFLM   71 (109)
T ss_dssp             CEEEE-EEEETTEEEEEEECCHHHHHHHHHHHHHHHHTTC-CCTTSCTTC------CCHHHHHHHHGG-GHHHHHHHHHH
T ss_pred             CceEE-EEcCCCEEEEEEEECHHHHHHHHHHHHHHHhccC-CCCCcCCCC------CCHHHHHHHHhH-HHHHHHHHHHH
Confidence            67888 8899999999999999999999999999999999 799999999      999999999997 59999999999


Q ss_pred             HHHHHHHHHhcCCcccCcccccchhhhhhhccCCCCceEEEEEEEeee
Q 028445          160 DTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQE  207 (209)
Q Consensus       160 ~~~~~ealeee~L~pi~~P~i~~~~e~l~~~f~~g~~f~F~v~vev~~  207 (209)
                      ++ |.+|+++++|  +++|.++.      ..++ |++|+|+++|+|.|
T Consensus        72 ~~-~~~ai~e~~l--~~~P~i~~------~~~~-~~~~~f~~~~ev~P  109 (109)
T 2nsc_A           72 DL-IPDTLKDRKL--ILSPIVTE------RELK-DVTARVVVEVHEEP  109 (109)
T ss_dssp             TT-HHHHTTTSCC--SSCCCCCC------CCCC-CCCCCCCCCCCCCC
T ss_pred             HH-HHHHHHHcCc--CCCCcccc------cccc-CCCEEEEEEEEecC
Confidence            99 9999999999  99999873      4578 99999999999875

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.93  E-value=4e-25  Score=202.46  Aligned_cols=115  Identities=17%  Similarity=0.294  Sum_probs=108.9

Q ss_pred             ceeeEEEeeCCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhhChhHHHHHHHHHH
Q 028445           79 DFVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKV  158 (209)
Q Consensus        79 ~~~v~v~e~~~~~~i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~G~~~V~~eai~~l  158 (209)
                      .|++++ ++.++++++|+|+||+++++++++++|+++++++ +||||||||      ||+++|+++||+ .|++++++++
T Consensus         3 ~M~v~~-e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~-~ipGFRkGK------vP~~~i~k~yG~-~v~~ea~~~~   73 (392)
T 1t11_A            3 HMQVTV-ETLEGLQRRLNITVPAANIEDAVAAELRNIAKNR-RFDGFRKGK------VPMKMVAKMYGK-AVRQDVLGEV   73 (392)
T ss_dssp             CCEEEE-EECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTC-CCTTSCSSC------CCHHHHHHHHHH-HHHHHHHHHH
T ss_pred             cceEEE-EEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhccC-CCCCCCCCC------CCHHHHHHHHhH-HHHHHHHHHH
Confidence            489999 9999999999999999999999999999999999 799999999      999999999996 6999999999


Q ss_pred             HHHHHHHHHHhcCCcccCcccccchhhhhhhccCCCCceEEEEEEEeeeC
Q 028445          159 IDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET  208 (209)
Q Consensus       159 I~~~~~ealeee~L~pi~~P~i~~~~e~l~~~f~~g~~f~F~v~vev~~~  208 (209)
                      |+.+|.+|+++++|+|+++|.++.      ..+++|++|+|+++|+|.|.
T Consensus        74 ~~~~~~~ai~e~~l~~~~~P~i~~------~~~~~~~~~~f~~~~ev~Pe  117 (392)
T 1t11_A           74 MQRHFIEAIVKEKINPAGAPTFAP------VEIGEGKDLVFTATFEVYPE  117 (392)
T ss_dssp             HHHHHHHHHHHTTCCBSSCCEEEE------EECCTTSCEEEEEEEEBCCC
T ss_pred             HHHHHHHHHHHcCCCcCCCCCccc------cccCCCCCEEEEEEecCCCc
Confidence            999999999999999999999873      35888999999999999874

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.92  E-value=8.4e-25  Score=202.39  Aligned_cols=114  Identities=15%  Similarity=0.304  Sum_probs=107.5

Q ss_pred             eeeEEEeeCCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhhChhHHHHHHHHHHH
Q 028445           80 FVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVI  159 (209)
Q Consensus        80 ~~v~v~e~~~~~~i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~G~~~V~~eai~~lI  159 (209)
                      |++++ ++.++++++|+|+||+++++.+++++|+++++++ +||||||||      ||+++|+++||. .|++++++++|
T Consensus         1 M~v~~-e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~-~ipGFRkGK------vP~~vi~~~yG~-~v~~ea~~~~~   71 (432)
T 1w26_A            1 MQVSV-ETTQGLGRRVTITIAADSIETAVKSELVNVAKKV-RIDGFRKGK------VPMNIVAQRYGA-SVRQDVLGDLM   71 (432)
T ss_dssp             CEEEC-CBCSTTEEEEEEEECHHHHHHHHHHHHHHHHHHT-TCGGGCCSS------SCHHHHHHHHCT-TTHHHHHHHHH
T ss_pred             CceEE-EEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhhhC-CCCCcCCCC------CCHHHHHHHHhH-HHHHHHHHHHH
Confidence            67888 8999999999999999999999999999999999 799999999      999999999997 59999999999


Q ss_pred             HHHHHHHHHhcCCcccCcccccchhhhhhhccCCCCceEEEEEEEeeeC
Q 028445          160 DTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET  208 (209)
Q Consensus       160 ~~~~~ealeee~L~pi~~P~i~~~~e~l~~~f~~g~~f~F~v~vev~~~  208 (209)
                      +.+|.+|+++++|+|+++|.++.      ..+++|++|+|+++|+|.|.
T Consensus        72 ~~~~~~ai~e~~l~~~~~P~i~~------~~~~~~~~~~f~~~~~v~Pe  114 (432)
T 1w26_A           72 SRNFIDAIIKEKINPAGAPTYVP------GEYKLGEDFTYSVEFEVYPE  114 (432)
T ss_dssp             HHHHHHHHHHSCCCEEEEEEEEE------CCCCTTSCEEEEEEEEECCC
T ss_pred             HHHHHHHHHhcCCCCCCCCCccc------cccCCCCcEEEEEEeccCCC
Confidence            99999999999999999999863      35788999999999999874

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=99.83  E-value=3.9e-21  Score=178.05  Aligned_cols=110  Identities=15%  Similarity=0.220  Sum_probs=95.5

Q ss_pred             eeeEEEeeCCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhhChhHHHHHHHHHHH
Q 028445           80 FVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVI  159 (209)
Q Consensus        80 ~~v~v~e~~~~~~i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~G~~~V~~eai~~lI  159 (209)
                      |++++ +..+++.++|+|+||+++++.+++++|+++++++ +||||||||      ||+.||+++||+ .++.++++.++
T Consensus         1 M~v~~-~~~e~~~~~l~i~v~~~~~~~~~~~~~k~~~k~v-~ipGFRkGK------vP~~vi~k~yG~-~v~~ev~~~l~   71 (433)
T 3gty_X            1 MEVKE-LERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRV-EIPGFRKGR------IPKNVLKMKLGE-EFQEYTLDFLM   71 (433)
T ss_dssp             CEEEE-EEEETTEEEEEEECCTTHHHHHHHHHHHHHHTSC-CCCC--CCC------CCSHHHHTTSTT-HHHHHHHHHHH
T ss_pred             CceEE-EEcCCCEEEEEEEEcHHHHHHHHHHHHHHHHHhC-CCCCCCCCC------CcHHHHHHHhhH-HHHHHHHHHHH
Confidence            67888 8889999999999999999999999999999999 799999999      999999999998 59999999999


Q ss_pred             HHHHHHHHHhcCCcccCcccccchhhhhhhccCCCCceEEEEEEEeeeC
Q 028445          160 DTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET  208 (209)
Q Consensus       160 ~~~~~ealeee~L~pi~~P~i~~~~e~l~~~f~~g~~f~F~v~vev~~~  208 (209)
                      +.++ +++.++  +|+++|.++.      ..++ |++|+|+++|+|.|.
T Consensus        72 ~~~~-~~~~~e--~~~~~P~i~~------~~~~-~~~~~f~~~vev~Pe  110 (433)
T 3gty_X           72 DLIP-DTLKDR--KLILSPIVTE------RELK-DVTARVVVEVHEEPE  110 (433)
T ss_dssp             TTST-TTSSSS--CBSSCCEEEE------EEEC-SSCEEEEEEEEBCCE
T ss_pred             HHHH-HHHHhc--CCCCCCCcCc------cccc-CCCEEEEEEEEecCC
Confidence            9987 555555  6899999863      2343 679999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d1p9ya_	117	d.241.2.1 (A:) Trigger factor ribosome-binding dom	4e-04

>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]} Length = 117

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Escherichia coli [TaxId: 562]

 Score = 36.5 bits (84), Expect = 4e-04
 Identities = 16/120 (13%), Positives = 42/120 (35%), Gaps = 14/120 (11%)

Query: 84  TTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLE 143
           +  T +    ++ + ++               VA    I G R+ K      +P +I+ +
Sbjct: 4   SVETTQGLGRRVTITIAADSIETAVKSEL-VNVAKKVRIDGLRKGK------VPMNIVAQ 56

Query: 144 VLGPTNVYKEVIKKVIDTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVI 203
             G  +V ++V+  ++     + + KE +  +               ++  E F++    
Sbjct: 57  RYGA-SVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYV------PGEYKLGEDFTYSVEF 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d1p9ya_	117	Trigger factor ribosome-binding domain {Escherichi	99.96
d1t11a2	129	Trigger factor ribosome-binding domain {Vibrio cho	99.94

>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=3.9e-29  Score=193.18  Aligned_cols=114  Identities=14%  Similarity=0.290  Sum_probs=108.4

Q ss_pred             eeeEEEeeCCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhhChhHHHHHHHHHHH
Q 028445           80 FVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVI  159 (209)
Q Consensus        80 ~~v~v~e~~~~~~i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~G~~~V~~eai~~lI  159 (209)
                      |++++ ++.++++++|+|+|+++++++.++++++++++++ +||||||||      ||+++|+++||+ +|++++++++|
T Consensus         1 M~v~v-~~~~~~~~~l~i~v~~~~v~~~~~~~~~~~~k~~-~ipGFRkGK------vP~~vi~k~yg~-~i~~e~~~~li   71 (117)
T d1p9ya_           1 MQVSV-ETTQGLGRRVTITIAADSIETAVKSELVNVAKKV-RIDGLRKGK------VPMNIVAQRYGA-SVRQDVLGDLM   71 (117)
T ss_dssp             CEEEE-EECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTC-CCTTSCTTC------SCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             CceEE-EecCCCEEEEEEEECHHHHHHHHHHHHHHHHhcC-CCCCcCCCC------ccHHHHHHHHhH-HHHHHHHHHHH
Confidence            67888 9999999999999999999999999999999999 799999999      999999999998 59999999999


Q ss_pred             HHHHHHHHHhcCCcccCcccccchhhhhhhccCCCCceEEEEEEEeeeC
Q 028445          160 DTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET  208 (209)
Q Consensus       160 ~~~~~ealeee~L~pi~~P~i~~~~e~l~~~f~~g~~f~F~v~vev~~~  208 (209)
                      ++.|.+|+++++|+|+++|.++.      ..+++|++|+|+++|++.|.
T Consensus        72 ~~~~~~al~e~~l~~~~~P~i~~------~~~~~~~~~~f~~~~ev~Pe  114 (117)
T d1p9ya_          72 SRNFIDAIIKEKINPAGAPTYVP------GEYKLGEDFTYSVEFEVYPE  114 (117)
T ss_dssp             HHHHHHHHHHTTCCCEEEEEEEE------CCCCSSSCEEEEEEEECCCC
T ss_pred             HHHHHHHHHhcccCccCCCcccc------ccccCCCCEEEEEEEEeCCc
Confidence            99999999999999999999873      56889999999999999874

>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.94  E-value=5.8e-27  Score=183.43  Aligned_cols=114  Identities=17%  Similarity=0.296  Sum_probs=108.2

Q ss_pred             eeeEEEeeCCCceEEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcHHHHHHhhChhHHHHHHHHHHH
Q 028445           80 FVVSTTRTNEATELKIGVEVSGAKTRAIFDDVFDKMVAAAQPIPGFRRVKGGKTPNIPRDILLEVLGPTNVYKEVIKKVI  159 (209)
Q Consensus        80 ~~v~v~e~~~~~~i~l~V~V~~~~~~~~~dkal~~lak~aq~IPGFRkGKggk~~~vP~~vl~k~~G~~~V~~eai~~lI  159 (209)
                      |.+++ ++.++++++|+|+|++++++..++++++++++++ +||||||||      ||+++++++||+ +++.+++++++
T Consensus         1 M~~~~-~~~~~~~~~l~v~v~~~e~~~~~~~~~~~~~k~~-~ipGFRkGK------vP~~ii~k~~~~-~i~~e~~~~~i   71 (129)
T d1t11a2           1 MQVTV-ETLEGLQRRLNITVPAANIEDAVAAELRNIAKNR-RFDGFRKGK------VPMKMVAKMYGK-AVRQDVLGEVM   71 (129)
T ss_dssp             CEEEE-EECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTC-CCTTSCSSC------CCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             CceEE-EEcCCcEEEEEEEECHHHHHHHHHHHHHHHHHhC-CCCCCCCCC------CcHHHHHHHhhh-hHHHHHHHHHH
Confidence            67888 9999999999999999999999999999999999 799999999      999999999997 69999999999


Q ss_pred             HHHHHHHHHhcCCcccCcccccchhhhhhhccCCCCceEEEEEEEeeeC
Q 028445          160 DTTVAEFVEKEDLKVSKDLRVEQSFEDLEKLFEPDEKFSFDAVIKLQET  208 (209)
Q Consensus       160 ~~~~~ealeee~L~pi~~P~i~~~~e~l~~~f~~g~~f~F~v~vev~~~  208 (209)
                      +++|.++++++++.|+++|.++.      ..++++++|.|+++|++.|.
T Consensus        72 ~~~~~~~l~e~~i~~~~~p~i~~------~~~~~~~~~~~~~~~ev~Pe  114 (129)
T d1t11a2          72 QRHFIEAIVKEKINPAGAPTFAP------VEIGEGKDLVFTATFEVYPE  114 (129)
T ss_dssp             HHHHHHHHHHTTCCBSSCCEEEE------EECCTTSCEEEEEEEEBCCC
T ss_pred             HHHHHHHHHhcccCcccCCCcCc------ccccCCCcEEEEEEEEEcCc
Confidence            99999999999999999999873      56889999999999999764