Citrus Sinensis ID: 028460

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
MAANTFSFPANLLRYSQSFDAKRSSAPSFLPSSSMFGNKLLIRPQLNSSRFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSVFSVILIFSKFFESKSPSASGEKVRVGK
cccccccccccHHcccccccccccccccccccccHHHHHHHHHccccccccHHHHccccHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccc
ccccEEcccccHccccccccccccccccccccccccccEEEEEccccccccEcccccccEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHccccccEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcc
maantfsfpanLLRYSQSfdakrssapsflpsssmfgnkllirpqlnssrfvtkyhrssatatvsfslpttvkpetaspdkipkWSARAIRSFAMAELEARklkypntgtEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLlgksdlfffsperppltEQAQRALDWAFNEKLKSVFSVILIFSKFfeskspsasgekvrvgk
maantfsfpaNLLRYSQSFDAKRSSAPSFLPSSSMFGNKLLIRPQLNSSRFVTKYHrssatatvsfslpttvkpetaspdkipkwSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSVFSVILIFSKffeskspsasgekvrvgk
MAANTFSFPANLLRYSQSFDAKRssapsflpsssMFGNKLLIRPQLNSSRFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSVFSVILIFSKFFESKSPSASGEKVRVGK
***************************************LLIR******RFVTKY*****************************WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPE***LTEQAQRALDWAFNEKLKSVFSVILIFSKFF****************
********PANLLRY*********************GNKLLI*******************************************SARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNL**************PLTEQAQRALDWAFNEKLKSVFSVILIFSKFFESKSPSASGEKVRV**
MAANTFSFPANLLRYSQSFDAKRSSAPSFLPSSSMFGNKLLIRPQLNSSRFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSVFSVILIFSKFFES**************
****TFSFPANLLRYSQ********APSFLPSSSMFGNKLLIRPQLNSSRFVTKYHRSSATATVSFSLPTTV******PDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSVFSVILIFSKFFESK*************
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ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAANTFSFPANLLRYSQSFDAKRSSAPSFLPSSSMFGNKLLIRPQLNSSRFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSVFSVILIFSKFFESKSPSASGEKVRVGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query208 2.2.26 [Sep-21-2011]
Q8GW78241 Clp protease-related prot no no 0.687 0.593 0.570 1e-40
Q2QVG9 919 Chaperone protein ClpC2, no no 0.437 0.099 0.333 2e-08
Q9TM05 854 ATP-dependent Clp proteas N/A no 0.437 0.106 0.354 9e-08
P31541 926 ATP-dependent Clp proteas N/A no 0.437 0.098 0.333 2e-07
Q9SXJ7 952 Chaperone protein ClpC2, no no 0.653 0.142 0.302 2e-07
O78410 819 ATP-dependent Clp proteas yes no 0.437 0.111 0.322 2e-07
P46523 874 ATP-dependent Clp proteas N/A no 0.437 0.104 0.333 2e-07
Q7F9I1 918 Chaperone protein ClpC1, no no 0.437 0.099 0.333 2e-07
Q9FI56 929 Chaperone protein ClpC1, no no 0.437 0.097 0.333 3e-07
P31542 923 ATP-dependent Clp proteas N/A no 0.437 0.098 0.333 3e-07
>sp|Q8GW78|CLP41_ARATH Clp protease-related protein At4g12060, chloroplastic OS=Arabidopsis thaliana GN=At4g12060 PE=1 SV=1 Back     alignment and function desciption
 Score =  166 bits (420), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/156 (57%), Positives = 109/156 (69%), Gaps = 13/156 (8%)

Query: 54  KYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAF 113
           + H+S+ +     SLPT       S  K PKWS RAI+SFAM ELEARKLKYPNTGTEA 
Sbjct: 68  RIHKSAIS-----SLPTANPDLVVSDAKKPKWSWRAIKSFAMGELEARKLKYPNTGTEAL 122

Query: 114 LMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWA 173
           LMGIL+EGTS T+KFLRAN I L+KVREET+ LLGK+D++FFSPE PPLTE AQRALD A
Sbjct: 123 LMGILIEGTSFTSKFLRANKIMLYKVREETVKLLGKADMYFFSPEHPPLTEDAQRALDSA 182

Query: 174 FNEKLKS-----VFSVILIFSKFFESKSPSASGEKV 204
            ++ LK+     V    ++   + E +SP   G K+
Sbjct: 183 LDQNLKAGGIGEVMPAHILLGIWSEVESP---GHKI 215

Arabidopsis thaliana (taxid: 3702)
>sp|Q2QVG9|CLPC2_ORYSJ Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPC2 PE=2 SV=2 Back     alignment and function description
>sp|Q9TM05|CLPC_CYACA ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1 Back     alignment and function description
>sp|P31541|CLPAA_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1 Back     alignment and function description
>sp|Q9SXJ7|CLPC2_ARATH Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana GN=CLPC2 PE=2 SV=1 Back     alignment and function description
>sp|O78410|CLPC_GUITH ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1 Back     alignment and function description
>sp|P46523|CLPA_BRANA ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1 Back     alignment and function description
>sp|Q7F9I1|CLPC1_ORYSJ Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica GN=CLPC1 PE=2 SV=2 Back     alignment and function description
>sp|Q9FI56|CLPC1_ARATH Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana GN=CLPC1 PE=1 SV=1 Back     alignment and function description
>sp|P31542|CLPAB_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query208
255539683227 ATP-dependent clp protease, putative [Ri 0.836 0.766 0.672 3e-53
147837826231 hypothetical protein VITISV_006813 [Viti 0.697 0.627 0.736 5e-53
359490173231 PREDICTED: clp protease-related protein 0.697 0.627 0.736 7e-53
449460786234 PREDICTED: clp protease-related protein 0.841 0.747 0.640 8e-53
356530949181 PREDICTED: clp protease-related protein 0.721 0.828 0.695 2e-51
356530947252 PREDICTED: clp protease-related protein 0.721 0.595 0.688 3e-51
363808208260 uncharacterized protein LOC100786582 [Gl 0.721 0.576 0.688 5e-51
359806749252 uncharacterized protein LOC100786069 [Gl 0.721 0.595 0.675 2e-50
18416540238 Double Clp-N motif protein [Arabidopsis 0.850 0.743 0.581 9e-47
5123926234 putative protein [Arabidopsis thaliana] 0.850 0.756 0.581 1e-46
>gi|255539683|ref|XP_002510906.1| ATP-dependent clp protease, putative [Ricinus communis] gi|223550021|gb|EEF51508.1| ATP-dependent clp protease, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 121/180 (67%), Positives = 134/180 (74%), Gaps = 6/180 (3%)

Query: 1   MAANTFSFPANLLRYSQSFDAKRSSAPSFLPSSSMFGNKLLIRPQLNSSRFVTKYHRSSA 60
           MA  TFSF +  L  S+ +  K   +   LP SS  GNKLLI+ Q N S FV K H S+A
Sbjct: 1   MATQTFSFLSISLPTSKIYVEKPHHSSLLLPLSSFHGNKLLIK-QSNFSNFVLKSHGSTA 59

Query: 61  TATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120
            ATV  SLPT   P      KIPKWSARAIRSF + ELEARKLKYPNTGTEA LMGIL+E
Sbjct: 60  -ATVLSSLPTKRHPS----GKIPKWSARAIRSFGLGELEARKLKYPNTGTEALLMGILIE 114

Query: 121 GTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKS 180
           GTS  AKFLRANGIT F+VREET+NLLGKSDL++FSPE PPLTEQAQRALDWA +EKLKS
Sbjct: 115 GTSPAAKFLRANGITFFEVREETVNLLGKSDLYYFSPEHPPLTEQAQRALDWAIDEKLKS 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147837826|emb|CAN60931.1| hypothetical protein VITISV_006813 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359490173|ref|XP_002268037.2| PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Vitis vinifera] gi|296084123|emb|CBI24511.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449460786|ref|XP_004148125.1| PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Cucumis sativus] gi|449499662|ref|XP_004160878.1| PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356530949|ref|XP_003534041.1| PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356530947|ref|XP_003534040.1| PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|363808208|ref|NP_001242487.1| uncharacterized protein LOC100786582 [Glycine max] gi|255639105|gb|ACU19852.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|359806749|ref|NP_001241043.1| uncharacterized protein LOC100786069 [Glycine max] gi|255641314|gb|ACU20934.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|18416540|ref|NP_567718.1| Double Clp-N motif protein [Arabidopsis thaliana] gi|14334924|gb|AAK59640.1| unknown protein [Arabidopsis thaliana] gi|16323364|gb|AAL15176.1| unknown protein [Arabidopsis thaliana] gi|21555497|gb|AAM63872.1| unknown [Arabidopsis thaliana] gi|195604812|gb|ACG24236.1| ATP-dependent Clp protease ATP-binding subunit clpA [Zea mays] gi|332659648|gb|AEE85048.1| Double Clp-N motif protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5123926|emb|CAB45514.1| putative protein [Arabidopsis thaliana] gi|7269388|emb|CAB81348.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query208
TAIR|locus:2138048238 AT4G25370 "AT4G25370" [Arabido 0.850 0.743 0.554 1.7e-43
TAIR|locus:2118066241 AT4G12060 "AT4G12060" [Arabido 0.548 0.473 0.710 1.9e-37
UNIPROTKB|Q3A9N1 811 CHY_2348 "Negative regulator o 0.437 0.112 0.397 7.8e-08
TIGR_CMR|CHY_2348 811 CHY_2348 "negative regulator o 0.437 0.112 0.397 7.8e-08
TAIR|locus:2157383 929 CLPC1 "CLPC homologue 1" [Arab 0.437 0.097 0.344 3.1e-06
TAIR|locus:2099433 952 HSP93-III [Arabidopsis thalian 0.567 0.123 0.314 1.1e-05
TAIR|locus:2085592 341 AT3G45450 [Arabidopsis thalian 0.336 0.205 0.357 0.00014
UNIPROTKB|P0A522 848 clpC "Probable ATP-dependent C 0.447 0.109 0.319 0.00018
UNIPROTKB|Q724I0 820 LMOf2365_0244 "ClpC ATPase" [L 0.326 0.082 0.382 0.00067
TAIR|locus:2138048 AT4G25370 "AT4G25370" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 102/184 (55%), Positives = 125/184 (67%)

Query:     1 MAANTFSFPANLLRYSQSFDAKRXXXXXXXX----XXXMFGNKLLIRPQLNSSRFVTKYH 56
             MA+ T SF    L   + F +++               + G KLL   Q +   FV K  
Sbjct:     1 MASYTVSFIPLTLSNPRIFVSRQNGSPSSSSRIPLTSSLLGKKLLAT-QPSHRCFVPKLR 59

Query:    57 RSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMG 116
               ++ +TV  ++P   +PE  S DKIPKWSARAI+S AM ELEARKLKYP+TGTEA LMG
Sbjct:    60 CLTSASTV-LNVPIA-QPENGSSDKIPKWSARAIKSLAMGELEARKLKYPSTGTEAILMG 117

Query:   117 ILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNE 176
             ILVEGTST AKFLR NG+TLFKVR+ETL+LLGKSD++FFSPE PPLTE AQ+A+ WA +E
Sbjct:   118 ILVEGTSTVAKFLRGNGVTLFKVRDETLSLLGKSDMYFFSPEHPPLTEPAQKAIAWAIDE 177

Query:   177 KLKS 180
             K KS
Sbjct:   178 KNKS 181
GO:0005524 "ATP binding" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0019538 "protein metabolic process" evidence=IEA
GO:0009579 "thylakoid" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009532 "plastid stroma" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
TAIR|locus:2118066 AT4G12060 "AT4G12060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q3A9N1 CHY_2348 "Negative regulator of genetic competence clpC/mecB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2348 CHY_2348 "negative regulator of genetic competence clpC/mecB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TAIR|locus:2157383 CLPC1 "CLPC homologue 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099433 HSP93-III [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085592 AT3G45450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P0A522 clpC "Probable ATP-dependent Clp protease ATP-binding subunit" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|Q724I0 LMOf2365_0244 "ClpC ATPase" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query208
CHL00095 821 CHL00095, clpC, Clp protease ATP binding subunit 2e-08
pfam0286153 pfam02861, Clp_N, Clp amino terminal domain 4e-08
COG0542 786 COG0542, clpA, ATP-binding subunits of Clp proteas 7e-04
CHL00095 821 CHL00095, clpC, Clp protease ATP binding subunit 8e-04
COG0542 786 COG0542, clpA, ATP-binding subunits of Clp proteas 0.002
>gnl|CDD|214361 CHL00095, clpC, Clp protease ATP binding subunit Back     alignment and domain information 
 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 84  KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
           +++ +AI+   +++ EAR+L +   GTE  L+G++ EGT   A+ L++ G+TL   R E 
Sbjct: 4   RFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTLKDARIEV 63

Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNE 176
             ++G+   F       P T +A+R L+ +  E
Sbjct: 64  EKIIGRGTGFVAV--EIPFTPRAKRVLEMSLEE 94

Length = 821
>gnl|CDD|217254 pfam02861, Clp_N, Clp amino terminal domain Back     alignment and domain information
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214361 CHL00095, clpC, Clp protease ATP binding subunit Back     alignment and domain information
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 208
CHL00095 821 clpC Clp protease ATP binding subunit 99.54
TIGR03346 852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 99.51
PRK10865 857 protein disaggregation chaperone; Provisional 99.44
TIGR02639 731 ClpA ATP-dependent Clp protease ATP-binding subuni 99.41
TIGR03345 852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 99.4
COG0542 786 clpA ATP-binding subunits of Clp protease and DnaK 99.31
PF0286153 Clp_N: Clp amino terminal domain; InterPro: IPR004 99.27
KOG1051 898 consensus Chaperone HSP104 and related ATP-depende 99.16
PRK11034 758 clpA ATP-dependent Clp protease ATP-binding subuni 99.14
CHL00095 821 clpC Clp protease ATP binding subunit 98.08
TIGR02639 731 ClpA ATP-dependent Clp protease ATP-binding subuni 98.02
TIGR03346 852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 97.87
COG0542 786 clpA ATP-binding subunits of Clp protease and DnaK 97.49
TIGR03345 852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 97.36
PRK10865 857 protein disaggregation chaperone; Provisional 97.09
PRK11034 758 clpA ATP-dependent Clp protease ATP-binding subuni 96.94
KOG1051 898 consensus Chaperone HSP104 and related ATP-depende 94.17
PLN00154136 histone H2A; Provisional 84.6
cd00074115 H2A Histone 2A; H2A is a subunit of the nucleosome 83.76
PTZ00017134 histone H2A; Provisional 82.37
KOG1756131 consensus Histone 2A [Chromatin structure and dyna 81.8
PLN00157132 histone H2A; Provisional 81.47
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information 
Probab=99.54  E-value=2.6e-14  Score=141.74  Aligned_cols=111  Identities=27%  Similarity=0.409  Sum_probs=100.5

Q ss_pred             cchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 028460           81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP  160 (208)
Q Consensus        81 m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~~~~~~~~~~~  160 (208)
                      |+++||++++++|..|+++|++++|.+|++||||+||+.++++.+.++|+.+|+|++.++..++..+++.+..  ....+
T Consensus         1 m~~rfT~~a~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~~~a~~iL~~~gid~~~l~~~l~~~l~~~~~~--~~~~~   78 (821)
T CHL00095          1 MFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTLKDARIEVEKIIGRGTGF--VAVEI   78 (821)
T ss_pred             ChhhHhHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHHhcCCCC--Ccccc
Confidence            7889999999999999999999999999999999999999889999999999999999999999988765431  12468


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCceEeEEeeeee
Q 028460          161 PLTEQAQRALDWAFNEKLKSVFSVILIFSKFFE  193 (208)
Q Consensus       161 ~~S~~lkrVLe~A~~~A~~~Gd~~Isi~~~~f~  193 (208)
                      ++|+.++++|+.|+.+|..+|+++|+..|+|+.
T Consensus        79 ~~S~~~~~vL~~A~~~A~~~~~~~I~~eHLLlA  111 (821)
T CHL00095         79 PFTPRAKRVLEMSLEEARDLGHNYIGTEHLLLA  111 (821)
T ss_pred             ccCHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence            899999999999999999999999998776643

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes Back     alignment and domain information
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN00154 histone H2A; Provisional Back     alignment and domain information
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome Back     alignment and domain information
>PTZ00017 histone H2A; Provisional Back     alignment and domain information
>KOG1756 consensus Histone 2A [Chromatin structure and dynamics] Back     alignment and domain information
>PLN00157 histone H2A; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query208
3fh2_A146 The Crystal Structure Of The Probable Atp-Dependent 5e-08
3pxg_A 468 Structure Of Meca121 And Clpc1-485 Complex Length = 7e-07
2k77_A146 Nmr Solution Structure Of The Bacillus Subtilis Clp 9e-07
2y1q_A150 Crystal Structure Of Clpc N-Terminal Domain Length 1e-06
2y1r_A149 Structure Of Meca121 & Clpc N-Domain Complex Length 1e-06
3pxi_A 758 Structure Of Meca108:clpc Length = 758 3e-06
>pdb|3FH2|A Chain A, The Crystal Structure Of The Probable Atp-Dependent Protease (Heat Shock Protein) From Corynebacterium Glutamicum Length = 146 Back     alignment and structure 
Iteration: 1

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 84  KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
           +++ RA R   +A+ EAR L +   GTE  L+G++ EG    AK L + GI+L  VR+E 
Sbjct: 6   RFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEV 65
Query: 144 LNLLGKSDLFFFSPE--RPPLTEQAQRALDWAFNEKLK 179
             ++G+       P     P T +A++ L+ +  E L+
Sbjct: 66  EEIIGQGS----QPTTGHIPFTPRAKKVLELSLREGLQ 99
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex Length = 468 Back     alignment and structure
>pdb|2K77|A Chain A, Nmr Solution Structure Of The Bacillus Subtilis Clpc N- Domain Length = 146 Back     alignment and structure
>pdb|2Y1Q|A Chain A, Crystal Structure Of Clpc N-Terminal Domain Length = 150 Back     alignment and structure
>pdb|2Y1R|A Chain A, Structure Of Meca121 & Clpc N-Domain Complex Length = 149 Back     alignment and structure
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc Length = 758 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query208
3fh2_A146 Probable ATP-dependent protease (heat shock prote; 6e-18
3fh2_A146 Probable ATP-dependent protease (heat shock prote; 4e-11
2y1q_A150 CLPC N-domain, negative regulator of genetic compe 9e-15
2y1q_A150 CLPC N-domain, negative regulator of genetic compe 2e-11
3fes_A145 ATP-dependent CLP endopeptidase; alpha-helical bun 1e-14
3fes_A145 ATP-dependent CLP endopeptidase; alpha-helical bun 7e-12
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 6e-13
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 1e-10
3pxg_A 468 Negative regulator of genetic competence CLPC/MEC; 6e-12
3pxg_A 468 Negative regulator of genetic competence CLPC/MEC; 1e-10
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 1e-09
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 9e-07
1k6k_A143 ATP-dependent CLP protease ATP-binding subunit CLP 2e-04
1k6k_A143 ATP-dependent CLP protease ATP-binding subunit CLP 3e-04
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum} Length = 146 Back     alignment and structure
 Score = 75.8 bits (187), Expect = 6e-18
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 84  KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
           +++ RA R   +A+ EAR L +   GTE  L+G++ EG    AK L + GI+L  VR+E 
Sbjct: 6   RFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEV 65

Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNE 176
             ++G+      +    P T +A++ L+ +  E
Sbjct: 66  EEIIGQGSQ--PTTGHIPFTPRAKKVLELSLRE 96
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum} Length = 146 Back     alignment and structure
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A Length = 150 Back     alignment and structure
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A Length = 150 Back     alignment and structure
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile} Length = 145 Back     alignment and structure
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile} Length = 145 Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Length = 758 Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Length = 758 Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Length = 468 Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Length = 468 Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Length = 758 Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Length = 758 Back     alignment and structure
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A* Length = 143 Back     alignment and structure
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A* Length = 143 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query208
3fh2_A146 Probable ATP-dependent protease (heat shock prote; 99.88
1khy_A148 CLPB protein; alpha helix, chaperone; 1.95A {Esche 99.87
3fes_A145 ATP-dependent CLP endopeptidase; alpha-helical bun 99.87
3zri_A171 CLPB protein, CLPV; chaperone, HSP100 proteins, AA 99.86
2y1q_A150 CLPC N-domain, negative regulator of genetic compe 99.86
1k6k_A143 ATP-dependent CLP protease ATP-binding subunit CLP 99.79
3pxg_A 468 Negative regulator of genetic competence CLPC/MEC; 99.76
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 99.72
1qvr_A 854 CLPB protein; coiled coil, AAA ATPase, chaperone; 99.68
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 99.57
3fh2_A146 Probable ATP-dependent protease (heat shock prote; 99.27
3fes_A145 ATP-dependent CLP endopeptidase; alpha-helical bun 99.27
2y1q_A150 CLPC N-domain, negative regulator of genetic compe 99.19
1khy_A148 CLPB protein; alpha helix, chaperone; 1.95A {Esche 99.1
1k6k_A143 ATP-dependent CLP protease ATP-binding subunit CLP 99.08
3pxg_A 468 Negative regulator of genetic competence CLPC/MEC; 98.78
3pxi_A 758 Negative regulator of genetic competence CLPC/MEC; 98.69
1r6b_X 758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 98.46
3zri_A171 CLPB protein, CLPV; chaperone, HSP100 proteins, AA 98.33
1qvr_A 854 CLPB protein; coiled coil, AAA ATPase, chaperone; 97.52
2f8n_G120 Core histone macro-H2A.1; nucleosome, NCP, macroh2 80.61
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
Probab=99.88  E-value=2.1e-22  Score=158.82  Aligned_cols=112  Identities=29%  Similarity=0.394  Sum_probs=104.0

Q ss_pred             CcchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCC
Q 028460           80 DKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPER  159 (208)
Q Consensus        80 ~m~~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~~~~~~~~~~  159 (208)
                      .|+++||++++++|+.|+++|+++||++|++||||+||++++++.+.++|+++|+|++.+++.+++.+++.|..  ...+
T Consensus         2 ~m~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l~~~~~~--~~~~   79 (146)
T 3fh2_A            2 AMFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEIIGQGSQP--TTGH   79 (146)
T ss_dssp             GGGGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHCCCSCC--CCSC
T ss_pred             chhhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHhccCCCC--CcCC
Confidence            48999999999999999999999999999999999999999889999999999999999999999999988763  2356


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCCceEeEEeeeee
Q 028460          160 PPLTEQAQRALDWAFNEKLKSVFSVILIFSKFFE  193 (208)
Q Consensus       160 ~~~S~~lkrVLe~A~~~A~~~Gd~~Isi~~~~f~  193 (208)
                      +++|+.++++|+.|+.+|+++|++||++.|+|..
T Consensus        80 ~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLla  113 (146)
T 3fh2_A           80 IPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLG  113 (146)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHH
Confidence            8999999999999999999999999998777654
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1 Back     alignment and structure
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile} Back     alignment and structure
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A Back     alignment and structure
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A Back     alignment and structure
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A* Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile} Back     alignment and structure
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A Back     alignment and structure
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1 Back     alignment and structure
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A* Back     alignment and structure
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 208
d1qvra1145 a.174.1.1 (A:4-148) N-terminal domain of ClpB (hea 1e-05
d1k6ka_142 a.174.1.1 (A:) N-terminal, ClpS-binding domain of 1e-04
d1khya_139 a.174.1.1 (A:) N-terminal domain of ClpB (heat sho 2e-04
>d1qvra1 a.174.1.1 (A:4-148) N-terminal domain of ClpB (heat shock protein F84.1) {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure

class: All alpha proteins
fold: Double Clp-N motif
superfamily: Double Clp-N motif
family: Double Clp-N motif
domain: N-terminal domain of ClpB (heat shock protein F84.1)
species: Thermus thermophilus [TaxId: 274]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 3/125 (2%)

Query: 84  KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
           +W+  A  + A A++ A+++K+           +L +  S   + L   G     ++E  
Sbjct: 2   RWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQ 61

Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLK---SVFSVILIFSKFFESKSPSAS 200
              L +      +     LT +   AL+ A     +      +V  +     E+      
Sbjct: 62  ERELARLPKVEGAEVGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPGLPG 121

Query: 201 GEKVR 205
            E ++
Sbjct: 122 LEALK 126
>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone {Escherichia coli [TaxId: 562]} Length = 142 Back     information, alignment and structure
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock protein F84.1) {Escherichia coli [TaxId: 562]} Length = 139 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query208
d1qvra1145 N-terminal domain of ClpB (heat shock protein F84. 99.87
d1khya_139 N-terminal domain of ClpB (heat shock protein F84. 99.86
d1k6ka_142 N-terminal, ClpS-binding domain of ClpA, an Hsp100 99.72
d1khya_139 N-terminal domain of ClpB (heat shock protein F84. 99.13
d1k6ka_142 N-terminal, ClpS-binding domain of ClpA, an Hsp100 99.03
d1qvra1145 N-terminal domain of ClpB (heat shock protein F84. 98.64
d1u35c1106 macro-H2A.1, histone domain {Human (Homo sapiens) 86.32
d1tzya_106 Histone H2A {Chicken (Gallus gallus), erythrocytes 84.62
d1f66c_103 Histone H2A {Human (Homo sapiens), variant H2A.Z [ 80.25
>d1qvra1 a.174.1.1 (A:4-148) N-terminal domain of ClpB (heat shock protein F84.1) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: All alpha proteins
fold: Double Clp-N motif
superfamily: Double Clp-N motif
family: Double Clp-N motif
domain: N-terminal domain of ClpB (heat shock protein F84.1)
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=6.1e-23  Score=160.78  Aligned_cols=118  Identities=15%  Similarity=0.077  Sum_probs=106.1

Q ss_pred             hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCchHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 028460           83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPL  162 (208)
Q Consensus        83 ~~fT~~a~~aL~~A~~~A~~~g~~~I~tEHLLlALL~e~~s~a~~iL~~~GVd~~~lr~~le~~l~k~~~~~~~~~~~~~  162 (208)
                      ++||++++++|..|+++|++++|++|+++|||+||++++++.+..+|+.+|+|++.+++.++..+.+.|.+.+...++++
T Consensus         1 dkfT~~a~~~l~~A~~~A~~~~~~~i~~~HlL~all~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~p~~~~~~~~~~~   80 (145)
T d1qvra1           1 ERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVGQYL   80 (145)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHHHHTSCCCCGGGTTCEE
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCCcchHHHHHHHcCCCHHHHHHHHHHHhhcccccCCCcccCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999998876654567999


Q ss_pred             CHHHHHHHHHHHHHHHHcCCceEeEEeee---eecCCCCCC
Q 028460          163 TEQAQRALDWAFNEKLKSVFSVILIFSKF---FESKSPSAS  200 (208)
Q Consensus       163 S~~lkrVLe~A~~~A~~~Gd~~Isi~~~~---f~~~~~~~~  200 (208)
                      |++++++|+.|+.+|+++||+||+++|+|   +..+++.+.
T Consensus        81 s~~l~~il~~A~~~a~~~gd~~Is~ehLllal~~~~~~~~~  121 (145)
T d1qvra1          81 TSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPGLPG  121 (145)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHSTTSCC
T ss_pred             CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHhcccchhh
Confidence            99999999999999999999999976554   445554443
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock protein F84.1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock protein F84.1) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra1 a.174.1.1 (A:4-148) N-terminal domain of ClpB (heat shock protein F84.1) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Back     information, alignment and structure
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]} Back     information, alignment and structure