Citrus Sinensis ID: 028518

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPNRGQASNNQGMDVLSGTNHDSAGVVPVGSFKREPEN
Secondary Structure (PSIPRED)
cccccccccccccEEEcccccccccHHHHHHHcccccccccccEEEcccccccccccccccccEEEEEcccccEEccccccccccccccccccEEEEccEEccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccHHHccccEEEEEHHHHHHHHHHccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccEccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVrvglanpsdvprcdicenapaffyceidgsslclqcdmtvhvggkrthgrYLLLRQRvefpgdkagrlEELALQSldqnkitrdqtqpfRITAREnqqnhrgspvpmldgnadgdgkvdnklidlnarpnrgqasnnqgmdvlsgtnhdsagvvpvgsfkrepen
Flexible Loop (DISEMBL)
MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELalqsldqnkitrdqtqpfritarenqqnhrgspvpmldgnaDGDGKVDNKLIDLnarpnrgqasnNQGMDVLSGTnhdsagvvpvgsfkrepen
Low Complexity Region (SEG)
MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPNRGQASNNQGMDVLSGTNHDSAGVVPVGSFKREPEN
Disordered region (IsUnstruct)
***LCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPG*******************************************************************************************************
Disordered Region (DISOPRED)
MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLR**************************************************************VDNKLIDL****************************************
Disordered Region (DISEMBL)
MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPNRGQASNNQGMDVLSGTNHDSAGVVPVGSFKREPEN
Disordered Region (DISPRO)
*RTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFP***********************************************************KLIDLNARPNRGQ********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPNRGQASNNQGMDVLSGTNHDSAGVVPVGSFKREPEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
Q9SYM2	299	Probable salt tolerance-l	no	no	0.649	0.451	0.410	1e-22
Q9LQZ7	331	Probable salt tolerance-l	no	no	0.461	0.290	0.450	5e-20
Q96288	248	Salt tolerance protein OS	no	no	0.456	0.383	0.489	1e-19
Q0IGM7	242	B-box zinc finger protein	no	no	0.485	0.417	0.428	7e-19
Q9SID1	238	Salt tolerance-like prote	no	no	0.625	0.546	0.402	9e-18
Q9SK53	294	Zinc finger protein CONST	no	no	0.394	0.278	0.489	3e-17
Q940T9	362	Zinc finger protein CONST	no	no	0.350	0.201	0.506	4e-17
O50055	355	Zinc finger protein CONST	no	no	0.408	0.239	0.463	8e-17
Q96502	347	Zinc finger protein CONST	no	no	0.408	0.244	0.442	5e-16
Q39057	373	Zinc finger protein CONST	no	no	0.408	0.227	0.463	1e-15

>sp|Q9SYM2|STHY_ARATH Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 85/146 (58%), Gaps = 11/146 (7%)

Query: 1   MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGL-ANPSDVPRCDIC 59
           M+  C+VCE+A A + C ADEAALC +CDEK+H  NKLA +H RV L A+ S +P+CDIC
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDIC 60

Query: 60  ENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSL 119
           + A  FF+C  D + LC +CD+ +H     T   ++   QR    G K G LE +     
Sbjct: 61  QEASGFFFCLQDRALLCRKCDVAIH-----TVNPHVSAHQRFLLTGIKVG-LESIDTGPS 114

Query: 120 DQNKITRD----QTQPFRITARENQQ 141
            ++  T D    +T+PF  +  E Q+
Sbjct: 115 TKSSPTNDDKTMETKPFVQSIPEPQK 140

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQZ7|STHX_ARATH Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1

 Score = 97.8 bits (242), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 62/102 (60%), Gaps = 6/102 (5%)

Query: 1   MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS----DVPRC 56
           M+  CDVC+   A +FC ADEA+LC  CD +VH  NKLAS+H+R  L  PS      P C
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query: 57  DICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HGRYLL 96
           DIC++  A  +C+ D + LC  CD ++H   + T  H R+LL
Sbjct: 61  DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLL 102

Arabidopsis thaliana (taxid: 3702)

>sp|Q96288|STO_ARATH Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 62/98 (63%), Gaps = 3/98 (3%)

Query: 1  MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS-DVPRCDIC 59
          M+  CDVCE A A + C ADEAALC  CD ++H  NKLAS+H R+ L + S   PRCDIC
Sbjct: 1  MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60

Query: 60 ENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HGRYL 95
          +   AF +C  D + LC  CD ++HV   R+  H R+L
Sbjct: 61 QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFL 98

May act as a transcription factor in the salt-stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0IGM7|BBX20_ARATH B-box zinc finger protein 20 OS=Arabidopsis thaliana GN=BBX20 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 62/105 (59%), Gaps = 4/105 (3%)

Query: 1   MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS--DVPRCDI 58
           M+  C VC+   A +FC ADEAALC  CD  VH  NKLA +H+R  L +P+  D P CDI
Sbjct: 1   MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDI 60

Query: 59  CENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HGRYLLLRQRV 101
           C    A  +C+ D + LC +CD+ +H   + T  H R+LL   ++
Sbjct: 61  CGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKI 105

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SID1|STH_ARATH Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2

 Score = 90.1 bits (222), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/134 (40%), Positives = 70/134 (52%), Gaps = 4/134 (2%)

Query: 1   MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS-DVPRCDIC 59
           M+  CDVCE A A L C ADEAALC  CD +VH  NKLAS+H R+ L + S   P CDIC
Sbjct: 1   MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDIC 60

Query: 60  ENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HGRYLLLRQRVEFPGDKAGR-LEELAL 116
               AF +C  D + LC  CD   H    R+  H R+L    RV        + +E+   
Sbjct: 61  LEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVEKNHF 120

Query: 117 QSLDQNKITRDQTQ 130
              +Q  +++  TQ
Sbjct: 121 DPSNQQSLSKPPTQ 134

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 54/92 (58%), Gaps = 10/92 (10%)

Query: 4  LCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAP 63
          LCD C+S AA LFC AD A LC  CD K+H  NKLASRH RV L        C++CE AP
Sbjct: 7  LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL--------CEVCEQAP 58

Query: 64 AFFYCEIDGSSLCLQCDMTVHVGG--KRTHGR 93
          A   C+ D ++LC+ CD  +H      R H R
Sbjct: 59 AHVTCKADAAALCVTCDRDIHSANPLSRRHER 90

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 51/81 (62%), Gaps = 8/81 (9%)

Query: 4  LCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAP 63
          LCD C+SA A L+C  D A LC SCD KVH  NKLASRH RV +        C++CE AP
Sbjct: 5  LCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM--------CEVCEQAP 56

Query: 64 AFFYCEIDGSSLCLQCDMTVH 84
          A   C+ D ++LC+ CD  +H
Sbjct: 57 AHVTCKADAAALCVTCDRDIH 77

Arabidopsis thaliana (taxid: 3702)

>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 54/95 (56%), Gaps = 10/95 (10%)

Query: 5  CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPA 64
          CD C SAA  ++C AD A LC SCD +VH  N+LASRH RV +        C  CE APA
Sbjct: 12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV--------CQSCERAPA 63

Query: 65 FFYCEIDGSSLCLQCDMTVHVGG--KRTHGRYLLL 97
           F+C+ D +SLC  CD  +H      R H R  +L
Sbjct: 64 AFFCKADAASLCTTCDSEIHSANPLARRHQRVPIL 98

Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 10/95 (10%)

Query: 5   CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPA 64
           CD C SAA  ++C AD A LC +CD +VH  N++ASRH RV +        C  CE+APA
Sbjct: 16  CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV--------CQSCESAPA 67

Query: 65  FFYCEIDGSSLCLQCDMTVHVGG--KRTHGRYLLL 97
            F C+ D +SLC  CD  +H      R H R  +L
Sbjct: 68  AFLCKADAASLCTACDAEIHSANPLARRHQRVPIL 102

Putative transcription factor. Does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 53/95 (55%), Gaps = 10/95 (10%)

Query: 5   CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPA 64
           CD C S A  ++C AD A LC SCD +VH  N++ASRH RV +        C+ CE APA
Sbjct: 20  CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV--------CESCERAPA 71

Query: 65  FFYCEIDGSSLCLQCDMTVHVGG--KRTHGRYLLL 97
            F CE D +SLC  CD  VH      R H R  +L
Sbjct: 72  AFLCEADDASLCTACDSEVHSANPLARRHQRVPIL 106

Putative transcription factor that acts in the long day flowering pathway and may mediate between the circadian clock and the control of flowering. Plays a role in the regulation of flowering time by acting on 'SUPPRESSOR OF OVEREXPRESSION OF CO1', 'TERMINAL FLOWER 1' and 'FLOWERING LOCUS T'. Also regulates P5CS2 and ACS10 (involved in proline and ethylene biosynthesis, respectively).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
255543867	212	Salt-tolerance protein, putative [Ricinu	0.995	0.976	0.800	5e-95
225427770	210	PREDICTED: salt tolerance protein [Vitis	0.995	0.985	0.803	7e-93
224103321	203	predicted protein [Populus trichocarpa]	0.961	0.985	0.775	5e-90
224080459	203	predicted protein [Populus trichocarpa]	0.971	0.995	0.753	1e-85
351726912	212	uncharacterized protein LOC100527369 [Gl	0.995	0.976	0.725	2e-84
356545059	212	PREDICTED: uncharacterized protein LOC10	0.995	0.976	0.729	3e-84
359476640	184	PREDICTED: probable salt tolerance-like	0.870	0.983	0.786	6e-77
115480279	211	Os09g0527900 [Oryza sativa Japonica Grou	0.980	0.966	0.669	5e-73
357483683	185	Zinc finger protein CONSTANS-like protei	0.870	0.978	0.733	4e-71
224097130	185	predicted protein [Populus trichocarpa]	0.875	0.983	0.725	1e-70

>gi|255543867|ref|XP_002512996.1| Salt-tolerance protein, putative [Ricinus communis] gi|223548007|gb|EEF49499.1| Salt-tolerance protein, putative [Ricinus communis]

 Score =  352 bits (903), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 169/211 (80%), Positives = 188/211 (89%), Gaps = 4/211 (1%)

Query: 1   MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRTLCDVCESAAAILFCAADEAALCRSCDEKVH+CNKLASRHVRVGLA+PS+VPRCDICE
Sbjct: 1   MRTLCDVCESAAAILFCAADEAALCRSCDEKVHLCNKLASRHVRVGLADPSEVPRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLD 120
           N PAFFYCEIDGSSLCLQCDM VHVGGKRTHGRYLLLRQRVEFPGDK GRL+EL  Q+LD
Sbjct: 61  NEPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGRYLLLRQRVEFPGDKPGRLDELGQQALD 120

Query: 121 QNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPNR--GQAS 178
           QN++ RDQ QP ++T  EN+QNHR SPVPM++ N++ DGK+DNKLIDLNARP R  GQ S
Sbjct: 121 QNEVRRDQIQPHKLTMGENKQNHRTSPVPMMENNSNIDGKIDNKLIDLNARPQRIHGQNS 180

Query: 179 NN--QGMDVLSGTNHDSAGVVPVGSFKREPE 207
            N  QGMDV+SG+NH+ A +VPVGSF REPE
Sbjct: 181 TNQEQGMDVMSGSNHECASIVPVGSFNREPE 211

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427770|ref|XP_002267957.1| PREDICTED: salt tolerance protein [Vitis vinifera] gi|297744726|emb|CBI37988.3| unnamed protein product [Vitis vinifera]

 Score =  345 bits (885), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 168/209 (80%), Positives = 179/209 (85%), Gaps = 2/209 (0%)

Query: 1   MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRTLCD CESAAAILFCAADEAALCR+CDEKVHMCNKLASRHVRVGLA+PSDVPRCDICE
Sbjct: 1   MRTLCDACESAAAILFCAADEAALCRACDEKVHMCNKLASRHVRVGLADPSDVPRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLD 120
           NAPAFFYCE+DG+SLCLQCDM VHVGGKRTHGRYLLLRQRVEFPGDK GRLEEL LQS +
Sbjct: 61  NAPAFFYCEVDGTSLCLQCDMIVHVGGKRTHGRYLLLRQRVEFPGDKPGRLEELRLQSGE 120

Query: 121 QNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPNR--GQAS 178
             +  R+Q  P  +T RE Q NH  S VPML+ N  GDGK+DNKLIDLNARP R  GQ S
Sbjct: 121 PGEARREQNWPPMMTLRETQPNHMASSVPMLENNTHGDGKMDNKLIDLNARPQRVHGQTS 180

Query: 179 NNQGMDVLSGTNHDSAGVVPVGSFKREPE 207
           NNQ MDV SGTNH+S  VVPVGSFKREPE
Sbjct: 181 NNQSMDVHSGTNHESESVVPVGSFKREPE 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103321|ref|XP_002313009.1| predicted protein [Populus trichocarpa] gi|222849417|gb|EEE86964.1| predicted protein [Populus trichocarpa]

 Score =  335 bits (860), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 162/209 (77%), Positives = 177/209 (84%), Gaps = 9/209 (4%)

Query: 1   MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRT+CDVCESAAAILFCAADEAALCRSCDEKVH+CNKLASRHVRVGLA+PS VP+CDICE
Sbjct: 1   MRTICDVCESAAAILFCAADEAALCRSCDEKVHLCNKLASRHVRVGLADPSAVPQCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLD 120
           NAPAFFYCEIDGSSLCLQCDM VHVGGKRTHGRYLLLRQRVEFPGDK GR+EE   Q LD
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGRYLLLRQRVEFPGDKPGRMEEQGQQPLD 120

Query: 121 QNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPNR--GQAS 178
            N+  RDQ QP ++TAREN+QNHR SPVPM++ N D DGK+DN LIDLNARP R  GQ S
Sbjct: 121 HNETRRDQNQPLKLTARENKQNHRASPVPMVENNTDSDGKMDNNLIDLNARPQRIHGQNS 180

Query: 179 NNQGMDVLSGTNHDSAGVVPVGSFKREPE 207
            NQ        NH+S+  VPVGSFKREP+
Sbjct: 181 TNQ-------ENHESSSAVPVGSFKREPQ 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080459|ref|XP_002306138.1| predicted protein [Populus trichocarpa] gi|222849102|gb|EEE86649.1| predicted protein [Populus trichocarpa]

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 156/207 (75%), Positives = 169/207 (81%), Gaps = 5/207 (2%)

Query: 1   MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MR LCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLA+PSDVP+CDICE
Sbjct: 1   MRMLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLADPSDVPQCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLD 120
            APAFFYCEIDGSSLCLQCDM VHVGGKRTHGRYLLLRQRVEFPGDK G  EE   Q LD
Sbjct: 61  KAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGRYLLLRQRVEFPGDKPGCTEEQGQQPLD 120

Query: 121 QNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPNRGQASNN 180
            N+  RDQ QP ++TARENQQNHR SPVPM++ N D DGK+DNKLIDLNARP R    N 
Sbjct: 121 DNETRRDQNQPPKLTARENQQNHRASPVPMVENNTDSDGKMDNKLIDLNARPQRVHGKNP 180

Query: 181 QGMDVLSGTNHDSAGVVPVGSFKREPE 207
              +     NH+S+ + P G FK EP+
Sbjct: 181 TNQE-----NHESSSLAPFGFFKGEPQ 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726912|ref|NP_001235095.1| uncharacterized protein LOC100527369 [Glycine max] gi|255632193|gb|ACU16455.1| unknown [Glycine max]

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 153/211 (72%), Positives = 173/211 (81%), Gaps = 4/211 (1%)

Query: 1   MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRTLCDVCESAAAILFCAADEAALC +CD K+HMCNKLASRHVRVGLA+P+DVPRCDICE
Sbjct: 1   MRTLCDVCESAAAILFCAADEAALCSACDHKIHMCNKLASRHVRVGLADPTDVPRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLD 120
           NAPAFFYCEIDGSSLCLQCDM VHVGGKRTHGRYLLLRQR +FPGDK  ++EEL LQ +D
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGRYLLLRQRAQFPGDKPAQMEELELQPMD 120

Query: 121 QNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPNR--GQAS 178
           QN+  RD++Q  ++  R++QQNH  SP P  + N DG GK+D KLIDLN RP R  G A 
Sbjct: 121 QNESRRDESQSLKLKTRDSQQNHSVSPFPRQENNIDGHGKMDKKLIDLNTRPLRLNGSAP 180

Query: 179 NNQG--MDVLSGTNHDSAGVVPVGSFKREPE 207
           NNQ   MD+L G NH+SA V PV SFK+E E
Sbjct: 181 NNQEQCMDILRGNNHESASVPPVESFKQESE 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545059|ref|XP_003540963.1| PREDICTED: uncharacterized protein LOC100818604 [Glycine max]

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 154/211 (72%), Positives = 174/211 (82%), Gaps = 4/211 (1%)

Query: 1   MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRTLCDVCESAAAI+FCAADEAALC +CD K+HMCNKLASRHVRVGLA+P+DVPRCDICE
Sbjct: 1   MRTLCDVCESAAAIVFCAADEAALCSACDHKIHMCNKLASRHVRVGLADPTDVPRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLD 120
           NAPAFFYCEIDGSSLCLQCDM VHVGGKRTHGRYLLLRQRV+FP DK  ++EEL LQ +D
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGRYLLLRQRVQFPCDKPAQMEELGLQPMD 120

Query: 121 QNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPNR--GQAS 178
           QN+  RD++Q  ++  R++QQNH  SPVP  + N DG GK+D KLIDLN RP R  G A 
Sbjct: 121 QNESRRDESQSLKLKIRDSQQNHSVSPVPRQENNIDGHGKMDKKLIDLNTRPLRLNGAAP 180

Query: 179 NNQ--GMDVLSGTNHDSAGVVPVGSFKREPE 207
           NNQ  GMD+L G NH SA V PV SFK+E E
Sbjct: 181 NNQERGMDILRGNNHKSASVPPVESFKQESE 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476640|ref|XP_003631872.1| PREDICTED: probable salt tolerance-like protein At1g78600-like [Vitis vinifera] gi|297735043|emb|CBI17405.3| unnamed protein product [Vitis vinifera]

 Score =  292 bits (747), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 144/183 (78%), Positives = 156/183 (85%), Gaps = 2/183 (1%)

Query: 1   MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRTLCDVCESAAAILFCAADEAALCR CDEKVHMCNKLASRHVRVGLA+PSDVPRCDICE
Sbjct: 1   MRTLCDVCESAAAILFCAADEAALCRVCDEKVHMCNKLASRHVRVGLADPSDVPRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLD 120
           NAPAFFYCEIDG+SLCLQCDM VHVGGKRTHGRYLLLRQRVEFPGDK+G LE+ AL  ++
Sbjct: 61  NAPAFFYCEIDGTSLCLQCDMIVHVGGKRTHGRYLLLRQRVEFPGDKSGNLEDPALLPME 120

Query: 121 QNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPNR--GQAS 178
             +  R Q Q  + T  ENQQN R SPVP +D NADG  K+D KLIDLN +P+R  GQAS
Sbjct: 121 PGENRRGQNQSSKPTVVENQQNRRVSPVPTMDANADGHAKMDTKLIDLNMKPHRIHGQAS 180

Query: 179 NNQ 181
           NNQ
Sbjct: 181 NNQ 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115480279|ref|NP_001063733.1| Os09g0527900 [Oryza sativa Japonica Group] gi|52077327|dbj|BAD46368.1| unknown protein [Oryza sativa Japonica Group] gi|113631966|dbj|BAF25647.1| Os09g0527900 [Oryza sativa Japonica Group] gi|215768601|dbj|BAH00830.1| unnamed protein product [Oryza sativa Japonica Group] gi|218202491|gb|EEC84918.1| hypothetical protein OsI_32118 [Oryza sativa Indica Group] gi|222641956|gb|EEE70088.1| hypothetical protein OsJ_30084 [Oryza sativa Japonica Group]

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 140/209 (66%), Positives = 161/209 (77%), Gaps = 5/209 (2%)

Query: 1   MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRT+CDVCESA A+LFC ADEAALCRSCDEKVHMCNKLA RHVRVGLA+P+ V RCDICE
Sbjct: 1   MRTICDVCESAPAVLFCVADEAALCRSCDEKVHMCNKLARRHVRVGLADPNKVQRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLD 120
           NAPAFFYCEIDG+SLCL CDMTVHVGGKRTHGRYLLLRQRVEFPGDK G ++++A+Q  D
Sbjct: 61  NAPAFFYCEIDGTSLCLSCDMTVHVGGKRTHGRYLLLRQRVEFPGDKPGHMDDVAMQQKD 120

Query: 121 QNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPNR--GQAS 178
               T  +  P  +T  +   +H  S  P  DGN D  G +D+K+IDLN RP R  GQ S
Sbjct: 121 PENRTDQKKAPHSVTKEQMANHHNVSDDPASDGNCDDQGNIDSKMIDLNMRPVRTHGQGS 180

Query: 179 NN--QGMDVLSGTNHDSAGVVPVGSFKRE 205
           N+  QG+DV S  NHDS GVVP  +F+RE
Sbjct: 181 NSQTQGVDV-SVNNHDSPGVVPTCNFERE 208

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483683|ref|XP_003612128.1| Zinc finger protein CONSTANS-like protein [Medicago truncatula] gi|355513463|gb|AES95086.1| Zinc finger protein CONSTANS-like protein [Medicago truncatula]

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 135/184 (73%), Positives = 146/184 (79%), Gaps = 3/184 (1%)

Query: 1   MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRTLCD CESAAAI+FCAADEAALCR+CDEKVHMCNKLASRHVRVGLA+PSDVPRCDICE
Sbjct: 1   MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLD 120
           NAPAFFYCE DGSSLCLQCDM VHVGGKRTHGRYLL RQRVEFPGDK    +  A Q LD
Sbjct: 61  NAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPSNADNPASQPLD 120

Query: 121 QNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPN---RGQA 177
              I R Q+   +    E QQNHR  PVP  + NADG+ K++NKLIDLN +PN      A
Sbjct: 121 PGDIKRGQSPLPKQKMGEKQQNHRMPPVPTSEPNADGNSKMENKLIDLNMKPNNRIHEHA 180

Query: 178 SNNQ 181
           SNNQ
Sbjct: 181 SNNQ 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097130|ref|XP_002310844.1| predicted protein [Populus trichocarpa] gi|222853747|gb|EEE91294.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 135/186 (72%), Positives = 150/186 (80%), Gaps = 4/186 (2%)

Query: 1   MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRTLCD CESAAAI+FCAADEAALC +CDEKVHMCNKLASRHVRVGLANPSDVPRCDICE
Sbjct: 1   MRTLCDACESAAAIVFCAADEAALCLACDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLD 120
           NAPAFFYCE DGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDK  + ++L  Q + 
Sbjct: 61  NAPAFFYCETDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKP-QPDDLHSQPMH 119

Query: 121 QNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPNRG---QA 177
             +  + Q QP + TA E +QN + SP PM   N+DG  KVD K+IDLN +P R    QA
Sbjct: 120 PGETRKGQNQPPKATAEEKRQNRQVSPAPMSLSNSDGHDKVDKKMIDLNMKPQRTDHEQA 179

Query: 178 SNNQGM 183
           SNNQ +
Sbjct: 180 SNNQEL 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
TAIR|locus:2050130	172	BBX18 "B-box domain protein 18	0.562	0.680	0.811	4.2e-57
TAIR|locus:2198841	248	STO "SALT TOLERANCE" [Arabidop	0.711	0.596	0.381	2.3e-23
TAIR|locus:2120207	242	BZS1 "BZS1" [Arabidopsis thali	0.461	0.396	0.45	3.9e-21
TAIR|locus:2005624	331	BBX21 "B-box domain protein 21	0.461	0.290	0.450	4.9e-21
TAIR|locus:2061330	238	STH "salt tolerance homologue"	0.625	0.546	0.402	1.7e-20
TAIR|locus:2074587	347	COL2 "CONSTANS-like 2" [Arabid	0.408	0.244	0.442	2e-19
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.394	0.278	0.489	1.7e-18
UNIPROTKB|Q9FRZ6	259	Q9FRZ6 "Hd1" [Oryza sativa (ta	0.389	0.312	0.417	5.5e-18
TAIR|locus:2122759	162	bbx23 "B-box domain protein 23	0.451	0.580	0.427	9.5e-18
TAIR|locus:2143221	355	COL1 "CONSTANS-like 1" [Arabid	0.408	0.239	0.463	1e-17

TAIR|locus:2050130 BBX18 "B-box domain protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
 Identities = 95/117 (81%), Positives = 104/117 (88%)

Query:     1 MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
             MR LCD CESAAAI+FCAADEAALC SCDEKVH CNKLASRH+RVGLA+PS+ P CDICE
Sbjct:     1 MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICE 60

Query:    61 NAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQ 117
             NAPAFFYCEIDGSSLCLQCDM VHVGGKRTH R+LLLRQR+EFPGDK    ++L L+
Sbjct:    61 NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHRRFLLLRQRIEFPGDKPNHADQLGLR 117

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2198841 STO "SALT TOLERANCE" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 58/152 (38%), Positives = 82/152 (53%)

Query:     1 MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSD-VPRCDIC 59
             M+  CDVCE A A + C ADEAALC  CD ++H  NKLAS+H R+ L + S   PRCDIC
Sbjct:     1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60

Query:    60 ENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HGRYLLLRQRVEFPGDKAGRLEELALQ 117
             +   AF +C  D + LC  CD ++HV   R+  H R+L    +V        +  E    
Sbjct:    61 QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTICSKEIEKNQP 120

Query:   118 SLDQNKITRDQTQPFRITARENQQNHRGSPVP 149
                 N+   +Q  P + T+++ QQ    +P+P
Sbjct:   121 EPSNNQQKANQI-PAKSTSQQQQQPSSATPLP 151

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009640 "photomorphogenesis" evidence=IGI

GO:0080167 "response to karrikin" evidence=IEP

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=IGI;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2120207 BZS1 "BZS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 45/100 (45%), Positives = 60/100 (60%)

Query:     1 MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS--DVPRCDI 58
             M+  C VC+   A +FC ADEAALC  CD  VH  NKLA +H+R  L +P+  D P CDI
Sbjct:     1 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDI 60

Query:    59 CENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HGRYLL 96
             C    A  +C+ D + LC +CD+ +H   + T  H R+LL
Sbjct:    61 CGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLL 100

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

TAIR|locus:2005624 BBX21 "B-box domain protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 46/102 (45%), Positives = 62/102 (60%)

Query:     1 MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDV----PRC 56
             M+  CDVC+   A +FC ADEA+LC  CD +VH  NKLAS+H+R  L  PS      P C
Sbjct:     1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query:    57 DICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HGRYLL 96
             DIC++  A  +C+ D + LC  CD ++H   + T  H R+LL
Sbjct:    61 DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLL 102

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009641 "shade avoidance" evidence=IGI;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2061330 STH "salt tolerance homologue" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 54/134 (40%), Positives = 70/134 (52%)

Query:     1 MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSD-VPRCDIC 59
             M+  CDVCE A A L C ADEAALC  CD +VH  NKLAS+H R+ L + S   P CDIC
Sbjct:     1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDIC 60

Query:    60 ENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HGRYLLLRQRVEFPGDKAGR-LEELAL 116
                 AF +C  D + LC  CD   H    R+  H R+L    RV        + +E+   
Sbjct:    61 LEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVEKNHF 120

Query:   117 QSLDQNKITRDQTQ 130
                +Q  +++  TQ
Sbjct:   121 DPSNQQSLSKPPTQ 134

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0019904 "protein domain specific binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2074587 COL2 "CONSTANS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
 Identities = 42/95 (44%), Positives = 54/95 (56%)

Query:     5 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPA 64
             CD C SAA  ++C AD A LC +CD +VH  N++ASRH RV +        C  CE+APA
Sbjct:    16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV--------CQSCESAPA 67

Query:    65 FFYCEIDGSSLCLQCDMTVHVGGK--RTHGRYLLL 97
              F C+ D +SLC  CD  +H      R H R  +L
Sbjct:    68 AFLCKADAASLCTACDAEIHSANPLARRHQRVPIL 102

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 45/92 (48%), Positives = 54/92 (58%)

Query:     4 LCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAP 63
             LCD C+S AA LFC AD A LC  CD K+H  NKLASRH RV L        C++CE AP
Sbjct:     7 LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL--------CEVCEQAP 58

Query:    64 AFFYCEIDGSSLCLQCDMTVHVGG--KRTHGR 93
             A   C+ D ++LC+ CD  +H      R H R
Sbjct:    59 AHVTCKADAAALCVTCDRDIHSANPLSRRHER 90

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

UNIPROTKB|Q9FRZ6 Q9FRZ6 "Hd1" [Oryza sativa (taxid:4530)]

 Score = 194 (73.4 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
 Identities = 38/91 (41%), Positives = 53/91 (58%)

Query:     5 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPA 64
             CD C +A ++++C AD A LC SCD +VH  N++ASRH RV +        C+ CE APA
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRV--------CEACERAPA 86

Query:    65 FFYCEIDGSSLCLQCDMTVHVGGK--RTHGR 93
                C  D ++LC+ CD+ V+      R H R
Sbjct:    87 ALACRADAAALCVACDVQVYSANPLARRHQR 117

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

TAIR|locus:2122759 bbx23 "B-box domain protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 44/103 (42%), Positives = 56/103 (54%)

Query:     1 MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGL-------ANPSDV 53
             M+  C+VCE A A + C +DEA LC+ CD KVH  NKL  RH RV L          S  
Sbjct:     1 MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGA 60

Query:    54 PRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLL 96
             P CDIC+    +F+C  D + LC  CD  +H     +H R+LL
Sbjct:    61 PLCDICQERKGYFFCLEDRAMLCNDCDEAIHTCN--SHQRFLL 101

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2143221 COL1 "CONSTANS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 44/95 (46%), Positives = 54/95 (56%)

Query:     5 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPA 64
             CD C SAA  ++C AD A LC SCD +VH  N+LASRH RV +        C  CE APA
Sbjct:    12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV--------CQSCERAPA 63

Query:    65 FFYCEIDGSSLCLQCDMTVHVGGK--RTHGRYLLL 97
              F+C+ D +SLC  CD  +H      R H R  +L
Sbjct:    64 AFFCKADAASLCTTCDSEIHSANPLARRHQRVPIL 98

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	208
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	1e-07
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	5e-07
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	9e-07
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	2e-06
pfam00643	42	pfam00643, zf-B_box, B-box zinc finger	0.001
pfam00643	42	pfam00643, zf-B_box, B-box zinc finger	0.001

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 53 VPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLL 96
           P+CD   + PA F+CE  G+ LC  CD   H    R H   LL
Sbjct: 3  APKCDSHGDEPAEFFCEECGALLCRTCDEAEH----RGHTVVLL 42

Length = 42

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 44.6 bits (106), Expect = 5e-07
 Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 6/44 (13%)

Query: 2  RTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRV 45
             CD      A  FC    A LCR+CDE  H        H  V
Sbjct: 3  APKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVV 40

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 43.8 bits (104), Expect = 9e-07
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 54 PRCDICENAPAFFYCEIDGSSLCLQCDMTVH 84
            CD     P   +CE D + LC+ CD++VH
Sbjct: 1  RLCDEHGEEPLSLFCETDRALLCVDCDLSVH 31

Length = 39

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 6/43 (13%)

Query: 3  TLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRV 45
           LCD        LFC  D A LC  CD  VH      S H RV
Sbjct: 1  RLCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRV 37

Length = 39

>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 51 SDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVG 86
          S    C   E  P   YCE     LC +C ++ H G
Sbjct: 1  SKERLCPEHEEKPLELYCEDCQQLLCEECALSGHKG 36

Length = 42

>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 9/30 (30%), Positives = 11/30 (36%)

Query: 4  LCDVCESAAAILFCAADEAALCRSCDEKVH 33
          LC   E     L+C   +  LC  C    H
Sbjct: 5  LCPEHEEKPLELYCEDCQQLLCEECALSGH 34

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.77
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	97.65
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.61
smart00336	42	BBOX B-Box-type zinc finger.	97.31
KOG4367	699	consensus Predicted Zn-finger protein [Function un	97.29
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	97.16
smart00336	42	BBOX B-Box-type zinc finger.	97.03

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.77  E-value=2.3e-05  Score=49.11  Aligned_cols=38  Identities=39%  Similarity=0.834  Sum_probs=33.2

Q ss_pred             CCCCCCCCCeeEEecCCCccccccccccccCCCCCCccceEe
Q 028518           55 RCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLL   96 (208)
Q Consensus        55 lCd~C~~~pA~~yC~~d~a~LC~~CD~~~Hsan~~~H~R~~l   96 (208)
                      +|+.|+.+++.+||..|...+|..|+...|    +.|.++||
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H----~~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVH----SGHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhc----CCCCEeeC
Confidence            699999889999999999999999998866    47877764

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.65  E-value=4.2e-05  Score=49.16  Aligned_cols=40  Identities=28%  Similarity=0.622  Sum_probs=33.8

Q ss_pred             CCCCCCCCCCCeeEEecCCCccccccccccccCCCCCCccceEe
Q 028518           53 VPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLL   96 (208)
Q Consensus        53 ~plCd~C~~~pA~~yC~~d~a~LC~~CD~~~Hsan~~~H~R~~l   96 (208)
                      ...|+.|+..++.+||..|..++|..|....|.+    |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~----H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG----HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT----SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC----CEEeEC
Confidence            4689999998899999999999999999998844    777654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.61  E-value=3.9e-05  Score=48.05  Aligned_cols=39  Identities=46%  Similarity=0.785  Sum_probs=33.7

Q ss_pred             CcccccCCCceeEEecccccccchhhccccccCcccccccccccc
Q 028518            3 TLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGL   47 (208)
Q Consensus         3 ~~Cd~C~~~~A~vyC~~D~A~LC~~CD~~vH~aN~l~~rH~Rvpl   47 (208)
                      ..|+.++++++.+||.+|.+.+|..|+...|.      .|.++||
T Consensus         1 ~~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           1 RLCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            36889988899999999999999999987775      5888774

>smart00336 BBOX B-Box-type zinc finger

Probab=97.31  E-value=0.00024  Score=45.00  Aligned_cols=39  Identities=46%  Similarity=0.883  Sum_probs=33.3

Q ss_pred             CCCCCCCCCCeeEEecCCCccccccccccccCCCCCCccceEe
Q 028518           54 PRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLL   96 (208)
Q Consensus        54 plCd~C~~~pA~~yC~~d~a~LC~~CD~~~Hsan~~~H~R~~l   96 (208)
                      ..|+.|+..++.+||..|...+|..|....|    +.|.+++|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H----~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH----RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc----CCCceecC
Confidence            4799999899999999999999999998766    56766553

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=97.29  E-value=8.3e-05  Score=70.79  Aligned_cols=83  Identities=27%  Similarity=0.490  Sum_probs=72.4

Q ss_pred             cccccCCCc--eeEEecccccccchhhccccccCccccccccccccCC--------CCCCCCCCCCCCCCeeEEecCCCc
Q 028518            4 LCDVCESAA--AILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLAN--------PSDVPRCDICENAPAFFYCEIDGS   73 (208)
Q Consensus         4 ~Cd~C~~~~--A~vyC~~D~A~LC~~CD~~vH~aN~l~~rH~Rvpl~~--------~~~~plCd~C~~~pA~~yC~~d~a   73 (208)
                      .|..|++++  |.|+|..|..++|.-|..+.|-+...+.+|.-+|-++        +..+-.|.-|+.+.-..||..|.+
T Consensus       164 kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~ck~  243 (699)
T KOG4367|consen  164 KCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKM  243 (699)
T ss_pred             hhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEecCC
Confidence            589999965  9999999999999999999999888899998777554        247788999999999999999999


Q ss_pred             ccccccccc-ccCC
Q 028518           74 SLCLQCDMT-VHVG   86 (208)
Q Consensus        74 ~LC~~CD~~-~Hsa   86 (208)
                      ++|..|... .|+.
T Consensus       244 pvc~~clee~khs~  257 (699)
T KOG4367|consen  244 PVCYQCLEEGKHSS  257 (699)
T ss_pred             hHHHHHHHhhcccc
Confidence            999999887 4543

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.16  E-value=0.00032  Score=44.97  Aligned_cols=40  Identities=25%  Similarity=0.453  Sum_probs=33.9

Q ss_pred             CCcccccCCCceeEEecccccccchhhccccccCcccccccccccc
Q 028518            2 RTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGL   47 (208)
Q Consensus         2 ~~~Cd~C~~~~A~vyC~~D~A~LC~~CD~~vH~aN~l~~rH~Rvpl   47 (208)
                      ...|+.+.+.++.+||..|...+|..|....|..      |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            3579999998899999999999999999998864      777664

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=97.03  E-value=0.00049  Score=43.52  Aligned_cols=39  Identities=41%  Similarity=0.686  Sum_probs=33.0

Q ss_pred             CcccccCCCceeEEecccccccchhhccccccCcccccccccccc
Q 028518            3 TLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGL   47 (208)
Q Consensus         3 ~~Cd~C~~~~A~vyC~~D~A~LC~~CD~~vH~aN~l~~rH~Rvpl   47 (208)
                      ..|..+.+.++.+||..|.+.+|..|....|      +.|.+++|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            5789999889999999999999999997766      45777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	208
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	2e-05

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} Length = 101

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 4  LCDVCES---AAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDIC- 59
          LC  C+      A+  C   E + C  C +  H   K  + H  +    P    R  +C 
Sbjct: 5  LCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPI-PDSHIRGLMCL 63

Query: 60 --ENAPAFFYCEIDGSSLCLQCDMT 82
            E+     YC  D   +C  C + 
Sbjct: 64 EHEDEKVNMYCVTDDQLICALCKLV 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	208
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	99.11
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	96.82
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	96.18
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	96.02
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	95.75
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	95.68
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	95.55
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	94.51
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.46
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	94.29
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	94.21
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	93.28
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	87.49
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	83.74
2d8v_A	67	Zinc finger FYVE domain-containing protein 19; zfy	83.42
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	80.56
2d8v_A	67	Zinc finger FYVE domain-containing protein 19; zfy	80.55

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=99.11  E-value=6.3e-11  Score=88.00  Aligned_cols=91  Identities=24%  Similarity=0.490  Sum_probs=75.0

Q ss_pred             CCcccccCC---CceeEEecccccccchhhccccccCcccccccccc-ccCCC-CCCCCCCCCCCCCeeEEecCCCcccc
Q 028518            2 RTLCDVCES---AAAILFCAADEAALCRSCDEKVHMCNKLASRHVRV-GLANP-SDVPRCDICENAPAFFYCEIDGSSLC   76 (208)
Q Consensus         2 ~~~Cd~C~~---~~A~vyC~~D~A~LC~~CD~~vH~aN~l~~rH~Rv-pl~~~-~~~plCd~C~~~pA~~yC~~d~a~LC   76 (208)
                      ...|++|.+   .+|+.+|..|.+.||..|...+|..++.+++|..+ |+.+. .....|+.|+..+..+||..|...+|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC   82 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC   82 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence            367999984   68999999999999999999999988878899987 55432 35668999988999999999999999


Q ss_pred             ccccc-cccCCCCCCccceEe
Q 028518           77 LQCDM-TVHVGGKRTHGRYLL   96 (208)
Q Consensus        77 ~~CD~-~~Hsan~~~H~R~~l   96 (208)
                      ..|.. ..|    +.|.-++|
T Consensus        83 ~~C~~~~~H----~~H~~~~l   99 (101)
T 2jun_A           83 ALCKLVGRH----RDHQVAAL   99 (101)
T ss_dssp             HHHHHHTTT----SSSCBCCC
T ss_pred             hhcCCCCCc----CCCCeecC
Confidence            99997 455    34555443

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=96.82  E-value=0.00083  Score=47.89  Aligned_cols=57  Identities=25%  Similarity=0.307  Sum_probs=43.4

Q ss_pred             cccccccccCC--CCCCCCCCCCCCCCeeEEecCCCcccccccccc-ccCCCCCCccceEeccc
Q 028518           39 ASRHVRVGLAN--PSDVPRCDICENAPAFFYCEIDGSSLCLQCDMT-VHVGGKRTHGRYLLLRQ   99 (208)
Q Consensus        39 ~~rH~Rvpl~~--~~~~plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~Hsan~~~H~R~~l~~~   99 (208)
                      +++|..+.-..  ......|+.|+..+..+||..|...+|..|... .|    +.|.-+||..+
T Consensus         2 ~~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H----~~H~~~~l~ea   61 (84)
T 2dja_A            2 SSGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH----RDHQVASLNDR   61 (84)
T ss_dssp             CCCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT----TTCCBCCCCSS
T ss_pred             CCCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC----CCCCccCHHHH
Confidence            46787776554  345668999988899999999999999999983 44    46777666543

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=96.18  E-value=0.003  Score=40.87  Aligned_cols=42  Identities=21%  Similarity=0.598  Sum_probs=34.5

Q ss_pred             CCCCCCCCCCCeeEEecCCCccccccccccccCCCCCCccceEecc
Q 028518           53 VPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLR   98 (208)
Q Consensus        53 ~plCd~C~~~pA~~yC~~d~a~LC~~CD~~~Hsan~~~H~R~~l~~   98 (208)
                      ...|+.|+..+..+||..|..++|..|....|    +.|.-++|..
T Consensus         6 ~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H----~~H~~~~l~e   47 (50)
T 2yvr_A            6 TVYCNVHKHEPLVLFCESCDTLTCRDCQLNAH----KDHQYQFLED   47 (50)
T ss_dssp             SCBCSSSTTCBCCEEETTTTEEECHHHHHTTT----TTCCEEETTC
T ss_pred             CCcCcCCCCCCEEEEeCCCCEEEecccCCCcC----CCCceecHHH
Confidence            35799998889999999999999999987555    4677776654

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=96.02  E-value=0.0039  Score=43.34  Aligned_cols=55  Identities=15%  Similarity=0.376  Sum_probs=40.9

Q ss_pred             cccccccccCCCCCCCCCCCCCCCCeeEEecCCCccccccccccccCCCCCCccceEecc
Q 028518           39 ASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLR   98 (208)
Q Consensus        39 ~~rH~Rvpl~~~~~~plCd~C~~~pA~~yC~~d~a~LC~~CD~~~Hsan~~~H~R~~l~~   98 (208)
                      +++|+-+.-........|+.|. .+..+||..|...+|..|....|    +.|.-+||..
T Consensus         4 ~~~H~L~~p~~~~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H----~~H~~~~l~e   58 (72)
T 2csv_A            4 GSSGQLLEPIRDFEARKCPVHG-KTMELFCQTDQTCICYLCMFQEH----KNHSTVTVEE   58 (72)
T ss_dssp             SCCCCCCCCSSSSSCCBCTTTC-CBCCEEESSSCCEECHHHHHTTT----SSSCEEEHHH
T ss_pred             ccCCcccCCccccccCcCcccC-CceEEEeCCCCeEEccccCCCCC----CCCCEecHHH
Confidence            4567766533334557899995 88999999999999999986544    5677776654

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=95.75  E-value=0.0042  Score=41.91  Aligned_cols=43  Identities=21%  Similarity=0.390  Sum_probs=34.9

Q ss_pred             CCCCCCCCCCCCeeEEecCCCcccccccccc-ccCCCCCCccceEecc
Q 028518           52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMT-VHVGGKRTHGRYLLLR   98 (208)
Q Consensus        52 ~~plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~Hsan~~~H~R~~l~~   98 (208)
                      ....|+.|+..+..+||..|..++|..|... .|    +.|.-+||..
T Consensus         7 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H----~~H~~~~l~~   50 (64)
T 2d8u_A            7 GHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH----KACEVAPLQS   50 (64)
T ss_dssp             CCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST----TSSCEECTTT
T ss_pred             CCCcCcCcCCCccceEcCcCCceeCccccCCCcC----CCCCeeCHHH
Confidence            3457999988899999999999999999875 55    4677776654

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=95.68  E-value=0.0065  Score=39.76  Aligned_cols=41  Identities=24%  Similarity=0.498  Sum_probs=33.4

Q ss_pred             CCCCCCCCCCCeeEEecCCCcccccccccc-ccCCCCCCccceEecc
Q 028518           53 VPRCDICENAPAFFYCEIDGSSLCLQCDMT-VHVGGKRTHGRYLLLR   98 (208)
Q Consensus        53 ~plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~Hsan~~~H~R~~l~~   98 (208)
                      ..+|+.|. .+..+||..|...+|..|... .|    +.|..+||.+
T Consensus         8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H----~~H~~~~l~e   49 (53)
T 2did_A            8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH----RAHTVVPLSG   49 (53)
T ss_dssp             CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT----TTSCEEECCC
T ss_pred             CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC----CCCcEeeHHH
Confidence            34799997 789999999999999999973 44    5677777664

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=95.55  E-value=0.0085  Score=38.46  Aligned_cols=41  Identities=22%  Similarity=0.426  Sum_probs=32.6

Q ss_pred             CCCCCCCCCCCCeeEEecCCCcccccccccc-ccCCCCCCccceEe
Q 028518           52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMT-VHVGGKRTHGRYLL   96 (208)
Q Consensus        52 ~~plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~Hsan~~~H~R~~l   96 (208)
                      +..+|+.|...+..+||..|..++|..|... .|    +.|.-+||
T Consensus         5 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H----~~H~~~~l   46 (48)
T 3ddt_A            5 SHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH----KACEVAPL   46 (48)
T ss_dssp             TSCBCSSSTTSBCCEEETTTTEEECHHHHHHSTT----TTSCEEEC
T ss_pred             cCCcCCCCCCccccEEcCCCCeeEcccccCCCcC----CCCcEEeC
Confidence            4468999988889999999999999999854 45    45666654

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=94.51  E-value=0.02  Score=35.47  Aligned_cols=30  Identities=27%  Similarity=0.669  Sum_probs=25.8

Q ss_pred             CCCCCCCCCCeeEEecCCCcccccccccc-cc
Q 028518           54 PRCDICENAPAFFYCEIDGSSLCLQCDMT-VH   84 (208)
Q Consensus        54 plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~H   84 (208)
                      .+|+.|. .+..+||..|...+|..|... .|
T Consensus         4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H   34 (42)
T 1fre_A            4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKH   34 (42)
T ss_dssp             CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred             ccchhhC-CeeeEEeCCCCeEEeccCCCCCCC
Confidence            4799996 789999999999999999984 44

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.46  E-value=0.019  Score=41.69  Aligned_cols=41  Identities=24%  Similarity=0.410  Sum_probs=34.2

Q ss_pred             CCCCCCCC---CCeeEEecCCCccccccccccccCCCC--CCccce
Q 028518           54 PRCDICEN---APAFFYCEIDGSSLCLQCDMTVHVGGK--RTHGRY   94 (208)
Q Consensus        54 plCd~C~~---~pA~~yC~~d~a~LC~~CD~~~Hsan~--~~H~R~   94 (208)
                      ..|++|..   .+|..+|..|...+|..|....|..+.  ++|.++
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            47999984   579999999999999999998887554  577765

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.29  E-value=0.029  Score=37.69  Aligned_cols=40  Identities=23%  Similarity=0.595  Sum_probs=32.6

Q ss_pred             CCCCCCCCCCeeEEecCCCcccccccccc-ccCCCCCCccceEecc
Q 028518           54 PRCDICENAPAFFYCEIDGSSLCLQCDMT-VHVGGKRTHGRYLLLR   98 (208)
Q Consensus        54 plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~Hsan~~~H~R~~l~~   98 (208)
                      .+|+.|. .+..+||..|...+|..|... -|    +.|..+||.+
T Consensus        15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH----~~H~~~~l~e   55 (59)
T 2yrg_A           15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEH----RGHHTFPTSG   55 (59)
T ss_dssp             SBCTTTC-CBCCEEETTTCSEECHHHHTSTTT----TTCCEEECCS
T ss_pred             ccChhhC-ceeeeecCCCCcEEecccCCCCcC----CCCcEeeHHH
Confidence            4799997 689999999999999999984 34    5677777664

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=94.21  E-value=0.025  Score=40.27  Aligned_cols=44  Identities=25%  Similarity=0.564  Sum_probs=36.9

Q ss_pred             CCcccccCC---CceeEEecccccccchhhccccccCcccccccccc
Q 028518            2 RTLCDVCES---AAAILFCAADEAALCRSCDEKVHMCNKLASRHVRV   45 (208)
Q Consensus         2 ~~~Cd~C~~---~~A~vyC~~D~A~LC~~CD~~vH~aN~l~~rH~Rv   45 (208)
                      ...||+|.+   .+|+..|..|.+.||..|=...|...+.+++|.-+
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            368999986   67999999999999999987679877777888744

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.28  E-value=0.029  Score=37.52  Aligned_cols=32  Identities=25%  Similarity=0.676  Sum_probs=27.0

Q ss_pred             CCCCCCCCCCCCeeEEecCCCcccccccccc-cc
Q 028518           52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMT-VH   84 (208)
Q Consensus        52 ~~plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~H   84 (208)
                      ...+|+.|. ++..+||..|...+|..|... .|
T Consensus        17 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH   49 (57)
T 2egm_A           17 DQGICPKHQ-EALKLFCEVDEEAICVVCRESRSH   49 (57)
T ss_dssp             TTSBCTTTC-CBCCEEETTTTEEECHHHHHSHHH
T ss_pred             ccCcChhhC-ceeeEEcCCCCcEEecccCCCCCC
Confidence            445799995 789999999999999999973 44

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=87.49  E-value=0.28  Score=34.73  Aligned_cols=42  Identities=24%  Similarity=0.414  Sum_probs=33.6

Q ss_pred             CCCCCCCCCC---CCeeEEecCCCccccccccccccCCCC--CCccc
Q 028518           52 DVPRCDICEN---APAFFYCEIDGSSLCLQCDMTVHVGGK--RTHGR   93 (208)
Q Consensus        52 ~~plCd~C~~---~pA~~yC~~d~a~LC~~CD~~~Hsan~--~~H~R   93 (208)
                      ....|++|..   .+|.-+|..|.+.+|..|....|....  ++|..
T Consensus        29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L   75 (78)
T 2ffw_A           29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL   75 (78)
T ss_dssp             CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred             CCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence            3578999986   569999999999999999987687653  45554

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=83.74  E-value=0.8  Score=29.45  Aligned_cols=41  Identities=37%  Similarity=0.678  Sum_probs=30.7

Q ss_pred             CcccccCCCceeEEecccccccchhhcc-ccccCccccccccccccCCC
Q 028518            3 TLCDVCESAAAILFCAADEAALCRSCDE-KVHMCNKLASRHVRVGLANP   50 (208)
Q Consensus         3 ~~Cd~C~~~~A~vyC~~D~A~LC~~CD~-~vH~aN~l~~rH~Rvpl~~~   50 (208)
                      ..|..-. .+-.+||..|...+|..|-. .-|.      .|..+||.++
T Consensus         9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea   50 (53)
T 2did_A            9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLSGP   50 (53)
T ss_dssp             CBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECCCT
T ss_pred             CcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHHHH
Confidence            4565555 57889999999999999975 4553      4777777654

>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1

Probab=83.42  E-value=0.84  Score=32.12  Aligned_cols=46  Identities=22%  Similarity=0.312  Sum_probs=38.8

Q ss_pred             CcccccCCCceeEEeccc-ccccchhhccccccCccccccccccccCCC
Q 028518            3 TLCDVCESAAAILFCAAD-EAALCRSCDEKVHMCNKLASRHVRVGLANP   50 (208)
Q Consensus         3 ~~Cd~C~~~~A~vyC~~D-~A~LC~~CD~~vH~aN~l~~rH~Rvpl~~~   50 (208)
                      +.|-+|... |+|.|..| .-.+|.+|=+..|.. .-.+.|+.+++..+
T Consensus         9 pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~~-~d~r~Hk~v~y~~~   55 (67)
T 2d8v_A            9 PWCCICNED-ATLRCAGCDGDLYCARCFREGHDN-FDLKEHQTSPYHPR   55 (67)
T ss_dssp             SSCTTTCSC-CCEEETTTTSEEECSSHHHHHTTT-SSTTTCCEECCCCS
T ss_pred             CeeEEeCCC-CeEEecCCCCceehHHHHHHHccc-hhhhccceeeccCC
Confidence            568899975 99999998 789999999999963 45789999998654

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=80.56  E-value=0.82  Score=35.00  Aligned_cols=81  Identities=19%  Similarity=0.380  Sum_probs=52.5

Q ss_pred             CCcccccCCCceeEEeccc-ccccchhhcc--ccccCccccccccccccCCCCCCCCCCCCCCCCeeEEec-CCCccccc
Q 028518            2 RTLCDVCESAAAILFCAAD-EAALCRSCDE--KVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCE-IDGSSLCL   77 (208)
Q Consensus         2 ~~~Cd~C~~~~A~vyC~~D-~A~LC~~CD~--~vH~aN~l~~rH~Rvpl~~~~~~plCd~C~~~pA~~yC~-~d~a~LC~   77 (208)
                      ...|..|+.....+|=..+ ...||.+|..  +.|..+....+-.+...........|..|.......|-. ..+..||.
T Consensus         5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lCN   84 (115)
T 4hc9_A            5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCN   84 (115)
T ss_dssp             -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCEECH
T ss_pred             CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEECCCCCCcch
Confidence            4679999985555555444 4589999984  556666544333322222224567899999877655543 45678999


Q ss_pred             ccccc
Q 028518           78 QCDMT   82 (208)
Q Consensus        78 ~CD~~   82 (208)
                      .|-+.
T Consensus        85 aCgl~   89 (115)
T 4hc9_A           85 ACGLY   89 (115)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99987

>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1

Probab=80.55  E-value=1  Score=31.62  Aligned_cols=46  Identities=26%  Similarity=0.424  Sum_probs=38.0

Q ss_pred             CCCCCCCCCCCCCeeEEecCC-CccccccccccccCCCC-CCccceEec
Q 028518           51 SDVPRCDICENAPAFFYCEID-GSSLCLQCDMTVHVGGK-RTHGRYLLL   97 (208)
Q Consensus        51 ~~~plCd~C~~~pA~~yC~~d-~a~LC~~CD~~~Hsan~-~~H~R~~l~   97 (208)
                      ...+.|-+|... |.+.|..| .-..|..|-...|..-. +.|+-++..
T Consensus         6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y~   53 (67)
T 2d8v_A            6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYH   53 (67)
T ss_dssp             CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTTTSSTTTCCEECCC
T ss_pred             cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHccchhhhccceeecc
Confidence            467899999866 99999998 78999999999997554 788886643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	208
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	96.62
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	96.37
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	96.12
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	95.79
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	95.52
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	95.36
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	84.11
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	81.16

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00035  Score=44.82  Aligned_cols=40  Identities=23%  Similarity=0.436  Sum_probs=32.9

Q ss_pred             CCCCCCCCCCeeEEecCCCcccccccccc-ccCCCCCCccceEec
Q 028518           54 PRCDICENAPAFFYCEIDGSSLCLQCDMT-VHVGGKRTHGRYLLL   97 (208)
Q Consensus        54 plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~Hsan~~~H~R~~l~   97 (208)
                      |+|+.|+..+..|||..|..++|..|... .|    +.|.-.+|.
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~H----k~H~v~~l~   42 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH----KACEVAPLQ   42 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST----TSSCEECTT
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCc----CcCcCcCHH
Confidence            58999999999999999999999999764 55    446665544

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.001  Score=44.73  Aligned_cols=41  Identities=29%  Similarity=0.472  Sum_probs=33.2

Q ss_pred             CCCCCCCCCCeeEEecCCCcccccccccc-ccCCCCCCccceEecc
Q 028518           54 PRCDICENAPAFFYCEIDGSSLCLQCDMT-VHVGGKRTHGRYLLLR   98 (208)
Q Consensus        54 plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~Hsan~~~H~R~~l~~   98 (208)
                      ..|+.|+..+..|||.+|..++|..|... .|    +.|.-.+|..
T Consensus        12 ~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H----k~H~~~~i~~   53 (71)
T d2djaa1          12 ITCLDHENEKVNMYCVSDDQLICALCKLVGRH----RDHQVASLND   53 (71)
T ss_dssp             CCCSSCSSSCCCEEETTTTEEECHHHHHTSTT----TTCCBCCCCS
T ss_pred             CcCcccCCccceeEcCCCCceeccccccCCCC----CCCcCcCHHH
Confidence            46999999999999999999999999765 45    4566655543

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0014  Score=41.21  Aligned_cols=38  Identities=26%  Similarity=0.506  Sum_probs=31.2

Q ss_pred             CCCCCCCCCCeeEEecCCCcccccccccc-ccCCCCCCccceE
Q 028518           54 PRCDICENAPAFFYCEIDGSSLCLQCDMT-VHVGGKRTHGRYL   95 (208)
Q Consensus        54 plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~Hsan~~~H~R~~   95 (208)
                      .+|+.|+..+..+||.+|..++|..|.+. .|    +.|.-.+
T Consensus         6 ~~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H----~~H~~~~   44 (47)
T d2dq5a1           6 LMCLEHEDEKVNMYCVTDDQLICALCKLVGRH----RDHQVAA   44 (47)
T ss_dssp             CBCSSCTTSBEEEEETTTTEEEEHHHHHTSST----TSSCCCC
T ss_pred             ccchhhCCCcceEEcCCCCccCCccCcCcCCc----CCCeEee
Confidence            37999999999999999999999999765 55    3455444

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0027  Score=38.73  Aligned_cols=38  Identities=26%  Similarity=0.580  Sum_probs=29.9

Q ss_pred             CCCCCCCCCCeeEEecCCCcccccccccc-ccCCCCCCccceEe
Q 028518           54 PRCDICENAPAFFYCEIDGSSLCLQCDMT-VHVGGKRTHGRYLL   96 (208)
Q Consensus        54 plCd~C~~~pA~~yC~~d~a~LC~~CD~~-~Hsan~~~H~R~~l   96 (208)
                      .+|+.|+ .+..+||.+|..++|..|... .|    +.|.-+||
T Consensus         2 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H----~~H~v~pi   40 (40)
T d2dida1           2 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH----RAHTVVPL   40 (40)
T ss_dssp             CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT----TTSCEEEC
T ss_pred             CcchhhC-ccceEEcccCCcEeeccCcCCCCc----CCCcEecC
Confidence            3799994 789999999999999999865 44    45665553

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=95.52  E-value=0.0032  Score=38.20  Aligned_cols=36  Identities=25%  Similarity=0.579  Sum_probs=28.5

Q ss_pred             CCCCCCCCCeeEEecCCCcccccccccc-ccCCCCCCccceE
Q 028518           55 RCDICENAPAFFYCEIDGSSLCLQCDMT-VHVGGKRTHGRYL   95 (208)
Q Consensus        55 lCd~C~~~pA~~yC~~d~a~LC~~CD~~-~Hsan~~~H~R~~   95 (208)
                      .|+.|+ ++..+||..|..++|..|... .|    +.|.-+|
T Consensus         2 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H----~~H~v~p   38 (39)
T d1frea_           2 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKH----ASHNFLP   38 (39)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC----TTCCCCC
T ss_pred             CCcccC-cceeEEcccCCcEeeccCcCCCCc----CCCcEee
Confidence            688995 789999999999999999764 34    4555544

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0036  Score=40.91  Aligned_cols=42  Identities=17%  Similarity=0.555  Sum_probs=33.6

Q ss_pred             CCCCCCCCCCCCeeEEecCCCccccccccccccCCCCCCccceEecc
Q 028518           52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLR   98 (208)
Q Consensus        52 ~~plCd~C~~~pA~~yC~~d~a~LC~~CD~~~Hsan~~~H~R~~l~~   98 (208)
                      ...+|..|+ .+..|||..|...+|..|....|    +.|.-++|..
T Consensus        10 ~~~~C~~H~-e~l~lyC~~c~~~iC~~C~~~~H----~~H~~~~l~~   51 (59)
T d2csva1          10 EARKCPVHG-KTMELFCQTDQTCICYLCMFQEH----KNHSTVTVEE   51 (59)
T ss_dssp             SCCBCTTTC-CBCCEEESSSCCEECHHHHHTTT----SSSCEEEHHH
T ss_pred             hhCchhhhC-CccceECCCCCceECcccCcccC----CCCCeeCHHH
Confidence            345899995 78999999999999999976656    4577777654

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.11  E-value=0.92  Score=29.88  Aligned_cols=49  Identities=22%  Similarity=0.434  Sum_probs=34.9

Q ss_pred             cccccccccCCCCCCCCCCCCCCCC---eeEEecCC----CccccccccccccCCCC--CCccceEe
Q 028518           39 ASRHVRVGLANPSDVPRCDICENAP---AFFYCEID----GSSLCLQCDMTVHVGGK--RTHGRYLL   96 (208)
Q Consensus        39 ~~rH~Rvpl~~~~~~plCd~C~~~p---A~~yC~~d----~a~LC~~CD~~~Hsan~--~~H~R~~l   96 (208)
                      +-+|..+         .|+.|...+   ..|.|..|    .--||..|-...+....  ..|.-.||
T Consensus         9 ~v~H~~~---------~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~~~~~~H~~~H~~~~I   66 (69)
T d2fc7a1           9 FVQHVGF---------KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPI   66 (69)
T ss_dssp             SCEESSC---------CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEE
T ss_pred             CceECCe---------EcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCcccCCCCCCCCCEEEe
Confidence            4567766         599999887   46889998    67899999876544333  34655554

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.16  E-value=0.63  Score=30.19  Aligned_cols=42  Identities=21%  Similarity=0.470  Sum_probs=32.0

Q ss_pred             CcccccCCCceeEEecccccccchhhcc-ccccCccccccccccccCCC
Q 028518            3 TLCDVCESAAAILFCAADEAALCRSCDE-KVHMCNKLASRHVRVGLANP   50 (208)
Q Consensus         3 ~~Cd~C~~~~A~vyC~~D~A~LC~~CD~-~vH~aN~l~~rH~Rvpl~~~   50 (208)
                      ..|..-...+..+||..|...+|..|-. ..|.      .|.-++|.++
T Consensus        12 ~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~Hk------~H~~~~i~~a   54 (71)
T d2djaa1          12 ITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDR   54 (71)
T ss_dssp             CCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSS
T ss_pred             CcCcccCCccceeEcCCCCceeccccccCCCCC------CCcCcCHHHH
Confidence            3576666678899999999999999954 3563      3888887764