Citrus Sinensis ID: 028525
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 208 | ||||||
| 224073720 | 306 | predicted protein [Populus trichocarpa] | 0.923 | 0.627 | 0.781 | 7e-84 | |
| 255560651 | 302 | conserved hypothetical protein [Ricinus | 0.918 | 0.632 | 0.785 | 9e-84 | |
| 225442154 | 303 | PREDICTED: uncharacterized protein LOC10 | 0.932 | 0.640 | 0.757 | 1e-82 | |
| 356561047 | 312 | PREDICTED: uncharacterized protein LOC10 | 0.932 | 0.621 | 0.711 | 3e-80 | |
| 356522384 | 316 | PREDICTED: uncharacterized protein LOC10 | 0.932 | 0.613 | 0.711 | 2e-79 | |
| 37991868 | 310 | expressed protein [Oryza sativa Japonica | 0.889 | 0.596 | 0.679 | 2e-68 | |
| 218193028 | 308 | hypothetical protein OsI_12007 [Oryza sa | 0.889 | 0.600 | 0.679 | 2e-68 | |
| 297842009 | 311 | hypothetical protein ARALYDRAFT_476397 [ | 0.918 | 0.614 | 0.628 | 6e-66 | |
| 326490477 | 299 | predicted protein [Hordeum vulgare subsp | 0.918 | 0.638 | 0.630 | 3e-65 | |
| 242035497 | 312 | hypothetical protein SORBIDRAFT_01g03274 | 0.918 | 0.612 | 0.630 | 4e-65 |
| >gi|224073720|ref|XP_002304142.1| predicted protein [Populus trichocarpa] gi|222841574|gb|EEE79121.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 315 bits (807), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 150/192 (78%), Positives = 171/192 (89%)
Query: 15 RMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74
+M+ILSLIVK+ R+KALVKDKR AME+FGTYVESMAGDAS+K FLK ALRGVR+IICP+E
Sbjct: 110 QMIILSLIVKKARVKALVKDKRTAMEAFGTYVESMAGDASSKPFLKKALRGVRAIICPNE 169
Query: 75 GFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIR 134
GF+SN G L+GV+HVILLSQLSVYRGSGGIQALMK NARKLAE+DES L+ASGIPYTIIR
Sbjct: 170 GFLSNGGDLQGVKHVILLSQLSVYRGSGGIQALMKNNARKLAEKDESTLVASGIPYTIIR 229
Query: 135 TGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVSD 194
G+LQ+TPGG QGF FE+G A GSLSKEDAAFICVEAL+ +PQ G FE VNGEEKVSD
Sbjct: 230 VGMLQDTPGGTQGFSFEKGSAEKGSLSKEDAAFICVEALDVVPQIGFTFEAVNGEEKVSD 289
Query: 195 WKKCFSRLMEKT 206
WK+ +RLMEK+
Sbjct: 290 WKERLTRLMEKS 301
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255560651|ref|XP_002521339.1| conserved hypothetical protein [Ricinus communis] gi|223539417|gb|EEF41007.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 315 bits (806), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 150/191 (78%), Positives = 170/191 (89%)
Query: 15 RMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74
+MVILSLIVKR ++KALVKDKR+AME+FGTYVESMAGD S+ F+K ALRGVR+IICP E
Sbjct: 109 QMVILSLIVKRAKVKALVKDKRSAMEAFGTYVESMAGDTSSMLFIKKALRGVRAIICPKE 168
Query: 75 GFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIR 134
GF+S+ GSLKGV+HVILLSQLSVYRGS GI+A+MK NARKL EQDES L+ASGIP TIIR
Sbjct: 169 GFLSSVGSLKGVKHVILLSQLSVYRGSSGIEAMMKSNARKLTEQDESALVASGIPCTIIR 228
Query: 135 TGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVSD 194
G+LQNTPGG QGF FE+GCA GSLSKEDAAFICVEALE++PQ IFEVVNGEEKVSD
Sbjct: 229 VGMLQNTPGGTQGFNFEKGCAEKGSLSKEDAAFICVEALETVPQAEFIFEVVNGEEKVSD 288
Query: 195 WKKCFSRLMEK 205
WK+C +RLMEK
Sbjct: 289 WKECLARLMEK 299
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442154|ref|XP_002274144.1| PREDICTED: uncharacterized protein LOC100246327 [Vitis vinifera] gi|297743019|emb|CBI35886.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 147/194 (75%), Positives = 173/194 (89%)
Query: 15 RMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74
+MVILSLIVKR+RIKALVKDKR AME+FGTYVESMAGDA++K F + ALRGVR+IICP+E
Sbjct: 107 QMVILSLIVKRSRIKALVKDKRAAMEAFGTYVESMAGDANDKSFQRKALRGVRTIICPNE 166
Query: 75 GFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIR 134
G ISN GSL GVQH+ILLSQLS YRG+GGIQALM+GNARKLAE+DES++ SGIPYTIIR
Sbjct: 167 GSISNFGSLMGVQHIILLSQLSAYRGTGGIQALMQGNARKLAEKDESIVTGSGIPYTIIR 226
Query: 135 TGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVSD 194
G+LQN+PGGK+GF F+EG AA G LSKEDAAFICVEA++++P+TGL+FEV NG EKVSD
Sbjct: 227 AGLLQNSPGGKEGFSFKEGVAATGRLSKEDAAFICVEAVDTVPETGLVFEVANGGEKVSD 286
Query: 195 WKKCFSRLMEKTGK 208
WK+CF L+EK K
Sbjct: 287 WKECFKALVEKPDK 300
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356561047|ref|XP_003548797.1| PREDICTED: uncharacterized protein LOC100806043 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 138/194 (71%), Positives = 169/194 (87%)
Query: 15 RMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74
+MVILSLIVK+ R+K LVKDKR A+E+FG+YVESMAGD S+K+F+K ALRGVR+IICP+E
Sbjct: 116 QMVILSLIVKKARVKTLVKDKRVALEAFGSYVESMAGDTSDKRFVKKALRGVRTIICPNE 175
Query: 75 GFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIR 134
GF+S+ GSL+GVQHVI+LS+LSVY G G Q++MK NA+KLAEQDES+L SGIPYTIIR
Sbjct: 176 GFLSSVGSLQGVQHVIVLSRLSVYGGQSGFQSMMKSNAKKLAEQDESVLKTSGIPYTIIR 235
Query: 135 TGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVSD 194
TG LQ+TPGGKQGF F+EGCAA+GS+SKEDAAF+CV A + +PQTG IFEV NG+ KVSD
Sbjct: 236 TGALQDTPGGKQGFTFDEGCAASGSISKEDAAFVCVAAFDCVPQTGFIFEVANGDNKVSD 295
Query: 195 WKKCFSRLMEKTGK 208
WK+C + LMEK +
Sbjct: 296 WKECLATLMEKASQ 309
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522384|ref|XP_003529826.1| PREDICTED: uncharacterized protein LOC100801216 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 138/194 (71%), Positives = 168/194 (86%)
Query: 15 RMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74
+MVILSLIVK+ R+K LVKDKR A+E+FG+YVESMAGD S+K+FLK ALRGVR+IICP+E
Sbjct: 120 QMVILSLIVKKARVKTLVKDKRVALEAFGSYVESMAGDTSDKRFLKKALRGVRTIICPNE 179
Query: 75 GFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIR 134
GF+S+ GSL+GVQHVI+LSQLSVY G G Q++MK NA+KLAEQDES+L SGIPYTIIR
Sbjct: 180 GFLSSVGSLQGVQHVIVLSQLSVYGGKSGFQSMMKSNAKKLAEQDESVLKTSGIPYTIIR 239
Query: 135 TGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVSD 194
TG L + PGGK+GF F+EGCAA GS+SKEDAAF+CV AL+ +PQTG IFEV NG+ KVSD
Sbjct: 240 TGALLDAPGGKRGFTFDEGCAARGSISKEDAAFVCVAALDCVPQTGFIFEVANGDNKVSD 299
Query: 195 WKKCFSRLMEKTGK 208
WK+C + LME+T +
Sbjct: 300 WKECLATLMEETSQ 313
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|37991868|gb|AAR06314.1| expressed protein [Oryza sativa Japonica Group] gi|108708765|gb|ABF96560.1| expressed protein [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/187 (67%), Positives = 154/187 (82%), Gaps = 2/187 (1%)
Query: 15 RMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74
+MVILSLI+KR RIKALVKD+R+ E+FGTYVE M G+ +K F K ALRGVR+IICP++
Sbjct: 117 QMVILSLILKRARIKALVKDRRSTEEAFGTYVECMVGNMEDKSFTKKALRGVRAIICPAD 176
Query: 75 -GFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTII 133
GF S+ LKGVQH++LLSQLSVYRGSGG+QA+M RKLAE+DE +++ASGIP TII
Sbjct: 177 DGFFSDL-DLKGVQHIVLLSQLSVYRGSGGLQAIMNSKLRKLAERDEEVVLASGIPSTII 235
Query: 134 RTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVS 193
RTG +Q+TPGG +GF F EG AA G +SKEDAA ICVEAL+SIPQT LIFEV NG+EKV+
Sbjct: 236 RTGSMQSTPGGDRGFDFTEGAAAKGRMSKEDAATICVEALDSIPQTTLIFEVANGDEKVT 295
Query: 194 DWKKCFS 200
DWK F+
Sbjct: 296 DWKAWFA 302
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Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218193028|gb|EEC75455.1| hypothetical protein OsI_12007 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/187 (67%), Positives = 154/187 (82%), Gaps = 2/187 (1%)
Query: 15 RMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74
+MVILSLI+KR RIKALVKD+R+ E+FGTYVE M G+ +K F K ALRGVR+IICP++
Sbjct: 115 QMVILSLILKRARIKALVKDRRSTEEAFGTYVECMVGNMEDKSFTKKALRGVRAIICPAD 174
Query: 75 -GFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTII 133
GF S+ LKGVQH++LLSQLSVYRGSGG+QA+M RKLAE+DE +++ASGIP TII
Sbjct: 175 DGFFSDL-DLKGVQHIVLLSQLSVYRGSGGLQAIMNSKLRKLAERDEEVVLASGIPSTII 233
Query: 134 RTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVS 193
RTG +Q+TPGG +GF F EG AA G +SKEDAA ICVEAL+SIPQT LIFEV NG+EKV+
Sbjct: 234 RTGSMQSTPGGDRGFDFTEGAAAKGRMSKEDAATICVEALDSIPQTTLIFEVANGDEKVT 293
Query: 194 DWKKCFS 200
DWK F+
Sbjct: 294 DWKAWFA 300
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Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842009|ref|XP_002888886.1| hypothetical protein ARALYDRAFT_476397 [Arabidopsis lyrata subsp. lyrata] gi|297334727|gb|EFH65145.1| hypothetical protein ARALYDRAFT_476397 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 255 bits (652), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 120/191 (62%), Positives = 153/191 (80%)
Query: 15 RMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74
+M+IL LIVK TR+KALVKDKR A+E+FG+YVE +GDAS+++FLK A +GV ++I P+E
Sbjct: 116 QMIILQLIVKGTRVKALVKDKRKALEAFGSYVELTSGDASDERFLKKAFKGVGAVISPTE 175
Query: 75 GFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIR 134
GF+ N S +GV+H +LLSQLSVY SGGIQA+M A+KLAEQDE+ +++S +PYTIIR
Sbjct: 176 GFLPNVKSFRGVKHAVLLSQLSVYESSGGIQAMMNNKAKKLAEQDENAVISSNVPYTIIR 235
Query: 135 TGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVSD 194
TG L+N+PGG QGF F G AA GS+SKEDAA ICVEAL IP TGLIFEV NGEE VSD
Sbjct: 236 TGKLENSPGGNQGFNFNAGAAAKGSISKEDAARICVEALSVIPPTGLIFEVTNGEEVVSD 295
Query: 195 WKKCFSRLMEK 205
W+ ++M++
Sbjct: 296 WEGQLMKVMQR 306
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326490477|dbj|BAJ84902.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/192 (63%), Positives = 151/192 (78%), Gaps = 1/192 (0%)
Query: 15 RMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74
+MV+LSLI+KR RIKALVKDKR+ E+FGTYVE M G+ +K F K LRGVR++ICP++
Sbjct: 107 QMVMLSLILKRARIKALVKDKRSTGEAFGTYVECMVGNIEDKSFTKKTLRGVRAVICPTD 166
Query: 75 -GFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTII 133
GF SN LKGV+H++LLSQLSVYR SGG+QA+M RKLAE+DE +++ASGIP TII
Sbjct: 167 DGFFSNQIDLKGVEHIVLLSQLSVYRNSGGLQAIMNSKLRKLAERDEEVVLASGIPSTII 226
Query: 134 RTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVS 193
R L+ TPGG++GF F EG AA G +S+EDAA ICVEAL++IPQT LIFEV NG+E V+
Sbjct: 227 RCASLETTPGGEKGFNFTEGIAAKGKISREDAATICVEALDAIPQTTLIFEVANGDENVT 286
Query: 194 DWKKCFSRLMEK 205
DWK F+ M K
Sbjct: 287 DWKTWFAERMSK 298
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242035497|ref|XP_002465143.1| hypothetical protein SORBIDRAFT_01g032740 [Sorghum bicolor] gi|241918997|gb|EER92141.1| hypothetical protein SORBIDRAFT_01g032740 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 253 bits (645), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 121/192 (63%), Positives = 150/192 (78%), Gaps = 1/192 (0%)
Query: 15 RMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74
+MVIL+LI+KR R KALVKDKR E+FGTYVE M GD +K F K ALRGVR+IICP++
Sbjct: 116 QMVILALILKRARTKALVKDKRTTEEAFGTYVECMVGDMEDKSFTKKALRGVRAIICPAD 175
Query: 75 -GFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTII 133
GF S LKGVQH++LLSQL+VYR SGG+QA+M +KLAE+DE +++ASGIP TII
Sbjct: 176 DGFFSEPTDLKGVQHIVLLSQLAVYRNSGGLQAIMNSKLKKLAERDEEVVLASGIPCTII 235
Query: 134 RTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVS 193
RTG LQ+TPGG++GF F EG A G +SKEDAA ICVEAL+SIP+ LIFEV NG+EKV
Sbjct: 236 RTGSLQSTPGGERGFDFTEGIATKGRISKEDAATICVEALDSIPRKTLIFEVANGDEKVR 295
Query: 194 DWKKCFSRLMEK 205
DW F+ +++
Sbjct: 296 DWNAWFAEQIKR 307
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 208 | ||||||
| TAIR|locus:2030270 | 312 | AT1G72640 [Arabidopsis thalian | 0.918 | 0.612 | 0.628 | 5.5e-61 | |
| TAIR|locus:2015651 | 598 | HCF173 "high chlorophyll fluor | 0.408 | 0.142 | 0.360 | 1.6e-05 | |
| TAIR|locus:2185228 | 253 | AT5G02240 [Arabidopsis thalian | 0.610 | 0.501 | 0.259 | 0.00025 |
| TAIR|locus:2030270 AT1G72640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 120/191 (62%), Positives = 151/191 (79%)
Query: 15 RMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74
+M+IL LIVK TR+KALVKDKR A+E+FG+YVE GDAS+++FLK A +GV ++I P+E
Sbjct: 117 QMIILQLIVKGTRVKALVKDKRKALEAFGSYVELTTGDASDERFLKKAFKGVGAVISPTE 176
Query: 75 GFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIR 134
GF+S S +GV+H +LLSQLSVY SGGIQA+M A+KLAEQDE+ ++S +PYTIIR
Sbjct: 177 GFLSIVKSFRGVKHAVLLSQLSVYESSGGIQAMMNSKAKKLAEQDENAAISSNVPYTIIR 236
Query: 135 TGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVSD 194
TG L+N+PGG QGF F G AA GS+SKEDAA ICVEAL IP TGLIFEV NGEE VSD
Sbjct: 237 TGKLENSPGGSQGFNFSAGAAAKGSISKEDAARICVEALSVIPPTGLIFEVTNGEEVVSD 296
Query: 195 WKKCFSRLMEK 205
W+ ++M++
Sbjct: 297 WEGQLMKVMQR 307
|
|
| TAIR|locus:2015651 HCF173 "high chlorophyll fluorescence phenotype 173" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 31/86 (36%), Positives = 44/86 (51%)
Query: 100 GSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGS 159
GSG ++A + K E L SG+ YTIIR G L+ PGG++ F++G +
Sbjct: 476 GSG-VEANRREQVLKAKRAGEDSLRRSGLGYTIIRPGPLKEEPGGQRALIFDQGNRISQG 534
Query: 160 LSKEDAAFICVEALESIPQTGLIFEV 185
+S D A ICV+AL F+V
Sbjct: 535 ISCADVADICVKALHDSTARNKSFDV 560
|
|
| TAIR|locus:2185228 AT5G02240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 104 (41.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 35/135 (25%), Positives = 60/135 (44%)
Query: 79 NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVL 138
+A + GV+H++++ + + L GN + E L SG PYTIIR G L
Sbjct: 118 DAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGL 177
Query: 139 QNTPGGKQ----GFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVS- 193
+ GG + G E ++ + D A +C++AL F++ + E S
Sbjct: 178 LDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTST 237
Query: 194 ---DWKKCFSRLMEK 205
D+K FS++ +
Sbjct: 238 PTKDFKALFSQVTSR 252
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 208 | |||
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 8e-15 | |
| pfam13460 | 182 | pfam13460, NAD_binding_10, NADH(P)-binding | 1e-13 | |
| cd05251 | 242 | cd05251, NmrA_like_SDR_a, NmrA (a transcriptional | 1e-05 | |
| cd05269 | 272 | cd05269, TMR_SDR_a, triphenylmethane reductase (TM | 3e-05 | |
| COG0702 | 275 | COG0702, COG0702, Predicted nucleoside-diphosphate | 2e-04 | |
| PLN00141 | 251 | PLN00141, PLN00141, Tic62-NAD(P)-related group II | 0.003 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 0.004 | |
| cd05231 | 259 | cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcript | 0.004 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 8e-15
Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 24/183 (13%)
Query: 27 RIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIIC-----PSEG----FI 77
+++ALV+D A + E + GD ++ + L AL G+ ++I G +
Sbjct: 25 QVRALVRDPSQAEKLEAAGAEVVVGDLTDAESLAAALEGIDAVISAAGSGGKGGPRTEAV 84
Query: 78 SNAGSLK--------GVQHVILLSQLSVYRGSGGIQALMKG-NARKLAEQDESMLMASGI 128
G++ GV+ +L+S + + S ++AL +A++ AE L ASG+
Sbjct: 85 DYDGNINLIDAAKKAGVKRFVLVSSIGADKPSHPLEALGPYLDAKRKAED---YLRASGL 141
Query: 129 PYTIIR-TGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQT-GLIFEVV 186
YTI+R G+ + G + +G +G +S+ D A + EAL P G FE+
Sbjct: 142 DYTIVRPGGLTDDPAGTGRVVLGGDGTRLDGPISRADVAEVLAEAL-DTPAAIGKTFELG 200
Query: 187 NGE 189
G+
Sbjct: 201 GGD 203
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-13
Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 23/174 (13%)
Query: 20 SLIVKRTR-----IKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIIC--P 72
+VK + AL ++ A T V+ D + L AL GV +++
Sbjct: 12 RRLVKELLARGHQVTALSRNPSKAPAPGVTPVQ---KDLFDLADLAEALAGVDAVVDAFG 68
Query: 73 SEGF-------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGN-----ARKLAEQDE 120
+ + +A + GV+ ++++S +YR G L AR A +E
Sbjct: 69 ARPDDSDGVKHLLDAAARAGVRRIVVVSAAGLYRDEPGTFRLDDAPLFPPYARAKAAAEE 128
Query: 121 SMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALE 174
+L ASG+ +TI+R G L + G E A S+S+ D A ++ LE
Sbjct: 129 -LLRASGLDWTIVRPGALFDEEGETYEIGTEGDPAGESSISRADVAAALLDELE 181
|
Length = 182 |
| >gnl|CDD|187561 cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 28/163 (17%)
Query: 27 RIKALVKDKRN----AMESFGTYVESMAGDASNKKFLKTALRGVRSIIC---PSEGFIS- 78
+++AL +D + A+ + G VE + GD + + L+ AL+GV + E
Sbjct: 25 KVRALTRDPSSPAAKALAAPG--VEVVQGDLDDPESLEAALKGVYGVFLVTDFWEAGGED 82
Query: 79 ---------NAGSLKGVQHVILLSQLSVYRGSGGI-QALMKGNARKLAEQDESMLMASGI 128
+A GVQH + S V + + + K E + ASG+
Sbjct: 83 EIAQGKNVVDAAKRAGVQHFVFSSVPDVEKLTLAVPHFDSKAEV-------EEYIRASGL 135
Query: 129 PYTIIRTGV-LQNTPGGKQGFQFEEGCAANGSLSKEDAAFICV 170
P TI+R ++N + E+G D +
Sbjct: 136 PATILRPAFFMENFLTPPAPQKMEDGTLTLVLPLDPDTKLPMI 178
|
NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 242 |
| >gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 25/161 (15%)
Query: 17 VILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRS--IICPS- 73
V+ L+ K + ALV++ A VE GD + + L+ A GV +I PS
Sbjct: 14 VVELLLAKVASVVALVRNPEKAKAFAADGVEVRQGDYDDPETLERAFEGVDRLLLISPSD 73
Query: 74 --------EGFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMA 125
+ FI +A GV+H++ LS SG + AR E L A
Sbjct: 74 LEDRIQQHKNFI-DAAKQAGVKHIVYLS------ASGADEDSPFLLARDHG-ATEKYLEA 125
Query: 126 SGIPYTIIRTGV-LQNTPGGKQGFQFEEG----CAANGSLS 161
SGIPYTI+R G + N EEG A +G ++
Sbjct: 126 SGIPYTILRPGWFMDNLLEFLPSIL-EEGTIYGPAGDGKVA 165
|
TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 272 |
| >gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 48/211 (22%), Positives = 76/211 (36%), Gaps = 33/211 (15%)
Query: 21 LIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGV------RSIICPSE 74
L+ + ++A V++ A G VE + GD + K L +GV ++ S+
Sbjct: 20 LLARGHEVRAAVRNPEAAAALAGG-VEVVLGDLRDPKSLVAGAKGVDGVLLISGLLDGSD 78
Query: 75 GFISNAGSL---------KGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMA 125
F + + GV+H + LS L S A K E+ L +
Sbjct: 79 AFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADAASPSALARAKAAV-------EAALRS 131
Query: 126 SGIPYTIIR-TGVLQNTPGGKQGFQFEEG----CAANGSLS---KEDAAFICVEALESIP 177
SGIPYT +R G G LS +D A AL++
Sbjct: 132 SGIPYTTLRRAAFYLGAGAAFIEAAEAAGLPVIPRGIGRLSPIAVDDVAEALAAALDAPA 191
Query: 178 QTGLIFEVVNGEEKVSDWKKCFSRLMEKTGK 208
G +E+ G E ++ + S L G+
Sbjct: 192 TAGRTYELA-GPEALTLA-ELASGLDYTIGR 220
|
Length = 275 |
| >gnl|CDD|215072 PLN00141, PLN00141, Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.003
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 118 QDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEAL 173
Q E + SGI YTI+R G L N P E GS+S++ A + VEAL
Sbjct: 163 QAEKYIRKSGINYTIVRPGGLTNDPPTGNIVMEPEDTLYEGSISRDQVAEVAVEAL 218
|
Length = 251 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.004
Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 17/141 (12%)
Query: 15 RMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIIC--- 71
R + L+ + + LV++ + + V + GD + L A++GV +I
Sbjct: 12 RALARELLEQGHEVTLLVRNTKRLSKEDQEPVAVVEGDLRDLDSLSDAVQGVDVVIHLAG 71
Query: 72 -----------PSEGFISNAGSLK--GVQHVILLSQLSVYRGSGGIQA-LMKGNARKLAE 117
EG + + K GV+H I +S L Y +
Sbjct: 72 APRDTRDFCEVDVEGTRNVLEAAKEAGVKHFIFISSLGAYGDLHEETEPSPSSPYLAVKA 131
Query: 118 QDESMLMASGIPYTIIRTGVL 138
+ E++L + +PYTI+R GV+
Sbjct: 132 KTEAVLREASLPYTIVRPGVI 152
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|187542 cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcriptional regulator) and triphenylmethane reductase (TMR) like proteins, subgroup 1, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 35/183 (19%), Positives = 63/183 (34%), Gaps = 36/183 (19%)
Query: 46 VESMAGDASNKKFLKTALRGVRSI---ICPSEGFISNAGSLK------------GVQHVI 90
E + GD + L AL GV ++ P+ + G ++ GV+ V+
Sbjct: 43 AEVVVGDLDDPAVLAAALAGVDAVFFLAPPAPTADARPGYVQAAEAFASALREAGVKRVV 102
Query: 91 LLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTG-VLQNT-----PGG 144
LS + S G R ++ +L +G+P +R ++N
Sbjct: 103 NLSSVGADPESP------SGLIRGHWLMEQ-VLNWAGLPVVHLRPAWFMENLLSQAPSIR 155
Query: 145 KQG--FQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVN--GEEKVS--DWKKC 198
K G G ++ +D A + + L P+ V G E ++ +
Sbjct: 156 KAGVLALPFPGDGRLPPIATDDIARVAAKLLLD-PEWH-GHRVYELTGPEDLTMNEIAAA 213
Query: 199 FSR 201
SR
Sbjct: 214 LSR 216
|
Atypical SDRs related to NMRa, TMR, and HSCARG (an NADPH sensor). This subgroup resembles the SDRs and has a partially conserved characteristic [ST]GXXGXXG NAD-binding motif, but lacks the conserved active site residues. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 259 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 208 | |||
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.96 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.94 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.94 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.93 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 99.93 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.93 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 99.92 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.92 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 99.92 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.91 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.91 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.9 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 99.9 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.9 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.89 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.88 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.88 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.87 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.87 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.87 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.87 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.86 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.86 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.86 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.86 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.86 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.86 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.86 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 99.85 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.85 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.85 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.85 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.84 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.84 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.84 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.84 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.84 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.83 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.83 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.83 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.83 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.83 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.81 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.81 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.81 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.8 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.8 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.8 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.8 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.8 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 99.8 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.8 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.79 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.78 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.78 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.77 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.77 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.72 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.72 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.72 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.72 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.71 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 99.71 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 99.69 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.68 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.68 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.67 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.67 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.65 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.63 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.62 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.61 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.6 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.59 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.59 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.59 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 99.58 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.58 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.58 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.57 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.57 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.56 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.56 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.56 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.55 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.55 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.54 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.54 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.54 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.53 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 99.52 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.52 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.52 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.51 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.51 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.51 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.5 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.5 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.5 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.5 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.5 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.49 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.49 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.49 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.49 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.49 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.49 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.49 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.48 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.48 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.48 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.47 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.47 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.46 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.46 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.46 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.45 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.45 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.45 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.45 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.45 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.44 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.44 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.44 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.44 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.43 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.42 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.41 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.41 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.41 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.41 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.41 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.41 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.4 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.4 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.4 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.4 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.39 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.39 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.39 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.39 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.39 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.39 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.38 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.38 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.38 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.38 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.38 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.38 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 99.37 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.37 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.37 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.37 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.37 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.37 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.37 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.36 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.36 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.36 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.36 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.36 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.35 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.35 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.35 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.35 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.34 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.34 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.34 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.34 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.33 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.33 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.33 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.33 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.33 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.33 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.32 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.32 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.32 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.31 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.3 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.3 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.3 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.29 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.29 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.29 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.29 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.29 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.29 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.29 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.28 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.28 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.28 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.27 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.27 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.27 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.27 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.26 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.25 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.25 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.25 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.24 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.23 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.23 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.22 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.21 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.19 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.19 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.19 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.18 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.18 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.17 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.16 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.16 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.15 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.15 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.13 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.13 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.12 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.12 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.09 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.09 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.09 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.08 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.06 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.05 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.04 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.04 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.03 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.03 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.01 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.0 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.0 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 98.99 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 98.97 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.97 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 98.97 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 98.97 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.96 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 98.96 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 98.95 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.93 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.93 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 98.9 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.9 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 98.89 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 98.88 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.85 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 98.84 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 98.82 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 98.82 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 98.78 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 98.78 | |
| PLN00015 | 308 | protochlorophyllide reductase | 98.75 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 98.75 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 98.67 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 98.64 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 98.61 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.58 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.52 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 98.46 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 98.43 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 98.43 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 98.41 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 98.38 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 98.36 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 98.29 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 98.29 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 98.27 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 98.25 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 98.19 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 98.18 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 98.11 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 98.1 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 98.09 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.09 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 98.05 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.01 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 97.99 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 97.92 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.9 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 97.87 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 97.78 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 97.7 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.67 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 97.66 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.63 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 97.56 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 97.55 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.49 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.34 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.3 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.29 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 97.27 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.27 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.22 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.22 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 97.05 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.05 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 97.03 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 96.94 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 96.89 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.88 | |
| PLN00106 | 323 | malate dehydrogenase | 96.85 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 96.83 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.79 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.79 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.75 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 96.7 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 96.7 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.66 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 96.63 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 96.54 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 96.54 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 96.52 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.52 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.48 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 96.45 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 96.4 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 96.39 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.38 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 96.28 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.2 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 96.16 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 96.16 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.14 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 96.11 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 96.08 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.04 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.03 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 96.01 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 95.99 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 95.98 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.98 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 95.92 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.9 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.89 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 95.86 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.76 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 95.76 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.69 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 95.68 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 95.67 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.67 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 95.66 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 95.65 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 95.64 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 95.62 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 95.61 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 95.61 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 95.6 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 95.59 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.53 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.52 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 95.51 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 95.49 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 95.47 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 95.46 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 95.45 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 95.4 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 95.38 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 95.25 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 95.21 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.15 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 95.12 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 95.11 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 95.07 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 95.03 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 94.99 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 94.94 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 94.94 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 94.9 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 94.89 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 94.83 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 94.82 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 94.79 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 94.77 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 94.67 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 94.67 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 94.61 | |
| PLN02928 | 347 | oxidoreductase family protein | 94.59 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 94.53 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.52 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 94.52 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.47 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 94.46 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 94.46 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 94.45 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 94.45 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 94.45 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 94.38 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 94.31 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 94.29 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 94.27 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 94.25 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 94.19 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 94.18 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 94.16 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 94.11 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 94.1 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 94.1 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.09 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 94.05 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 94.03 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 93.96 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 93.95 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 93.94 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 93.93 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 93.83 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 93.82 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 93.81 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 93.75 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 93.66 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 93.66 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 93.61 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 93.58 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 93.52 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 93.5 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 93.47 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 93.45 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 93.4 | |
| PLN02256 | 304 | arogenate dehydrogenase | 93.37 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 93.37 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 93.32 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 93.31 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 93.2 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 93.13 | |
| PLN02494 | 477 | adenosylhomocysteinase | 92.98 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 92.97 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 92.93 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 92.89 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 92.86 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 92.85 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.85 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 92.78 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 92.75 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 92.71 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 92.7 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 92.66 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 92.65 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 92.6 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.59 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 92.57 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 92.57 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 92.54 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 92.44 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 92.35 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 92.3 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.23 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 92.23 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 92.2 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 92.18 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 92.14 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 92.14 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 92.06 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 91.95 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 91.92 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 91.91 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 91.86 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 91.82 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 91.78 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 91.76 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 91.69 | |
| PRK08223 | 287 | hypothetical protein; Validated | 91.67 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 91.64 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 91.59 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 91.48 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 91.34 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 91.33 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 91.22 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 91.14 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 91.14 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.08 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 91.07 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 91.07 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 90.95 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 90.94 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 90.92 | |
| PLN02712 | 667 | arogenate dehydrogenase | 90.87 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 90.86 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 90.6 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 90.59 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 90.39 |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-28 Score=191.04 Aligned_cols=193 Identities=23% Similarity=0.228 Sum_probs=148.3
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC-----------
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG----------- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~----------- 75 (208)
-++||++|++|+++|+++||+|++++|+.++.......+++++.+|++|++++.++++++|+||++.+.
T Consensus 6 tGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~~~~~~~~~~ 85 (317)
T CHL00194 6 IGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSRPSDLYNAKQI 85 (317)
T ss_pred ECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCccchhhh
Confidence 467999999999999999999999999977654333357999999999999999999999999987210
Q ss_pred ------chhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCC-----
Q 028525 76 ------FISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGG----- 144 (208)
Q Consensus 76 ------~~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~----- 144 (208)
.+.++++++|++|||++||.++... +..++.. .+.++|+++++++++||++||+.++.....
T Consensus 86 ~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~~--~~~~~~~-----~K~~~e~~l~~~~l~~tilRp~~~~~~~~~~~~~~ 158 (317)
T CHL00194 86 DWDGKLALIEAAKAAKIKRFIFFSILNAEQY--PYIPLMK-----LKSDIEQKLKKSGIPYTIFRLAGFFQGLISQYAIP 158 (317)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEecccccccc--CCChHHH-----HHHHHHHHHHHcCCCeEEEeecHHhhhhhhhhhhh
Confidence 1346788899999999999764321 1122221 223578899999999999999987653210
Q ss_pred ---ccceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 145 ---KQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 145 ---~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
.....+..+.....+++++|+|++++.+++++...+++||++++. .+++|+++.+.+++|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~~~ni~g~~~~s~~el~~~~~~~~g~~ 224 (317)
T CHL00194 159 ILEKQPIWITNESTPISYIDTQDAAKFCLKSLSLPETKNKTFPLVGPKSWNSSEIISLCEQLSGQK 224 (317)
T ss_pred hccCCceEecCCCCccCccCHHHHHHHHHHHhcCccccCcEEEecCCCccCHHHHHHHHHHHhCCC
Confidence 111222223344677899999999999998877789999999765 49999999999999875
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=162.01 Aligned_cols=166 Identities=28% Similarity=0.366 Sum_probs=128.8
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC--C-------ch
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE--G-------FI 77 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~--~-------~~ 77 (208)
.++||++|++++++|+++||+|++++|++++... ..+++++.+|+.|++++.++++++|+||++.+ . .+
T Consensus 4 ~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~ 81 (183)
T PF13460_consen 4 FGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPKDVDAAKNI 81 (183)
T ss_dssp ETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTTHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcccccccccc
Confidence 4679999999999999999999999999998766 56899999999999999999999999998832 1 14
Q ss_pred hhhhhhcCCCeEEEeceeeeccCCCCcc-----cccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCCccceeeec
Q 028525 78 SNAGSLKGVQHVILLSQLSVYRGSGGIQ-----ALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEE 152 (208)
Q Consensus 78 ~~a~~~~gv~~~v~~Ss~~~~~~~~~~~-----~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~ 152 (208)
.++++++|++|+|++|+.+++....... +.... ......++|+.+++++++|+++||+++++.......+....
T Consensus 82 ~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~ivrp~~~~~~~~~~~~~~~~~ 160 (183)
T PF13460_consen 82 IEAAKKAGVKRVVYLSSAGVYRDPPGLFSDEDKPIFPE-YARDKREAEEALRESGLNWTIVRPGWIYGNPSRSYRLIKEG 160 (183)
T ss_dssp HHHHHHTTSSEEEEEEETTGTTTCTSEEEGGTCGGGHH-HHHHHHHHHHHHHHSTSEEEEEEESEEEBTTSSSEEEESST
T ss_pred cccccccccccceeeeccccCCCCCcccccccccchhh-hHHHHHHHHHHHHhcCCCEEEEECcEeEeCCCcceeEEecc
Confidence 5678889999999999999887432211 11111 11222357888999999999999999998774432221123
Q ss_pred CCcCCCcccHHHHHHHHHHHhhC
Q 028525 153 GCAANGSLSKEDAAFICVEALES 175 (208)
Q Consensus 153 ~~~~~~~v~~~Dva~~~~~~l~~ 175 (208)
+.....+|+++|+|++++.++++
T Consensus 161 ~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 161 GPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp STTSHCEEEHHHHHHHHHHHHH-
T ss_pred CCCCcCcCCHHHHHHHHHHHhCC
Confidence 34457889999999999999874
|
... |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=173.18 Aligned_cols=187 Identities=15% Similarity=0.134 Sum_probs=144.5
Q ss_pred hhccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHh------cC-CCEEEEcCCC--
Q 028525 5 KKMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTAL------RG-VRSIICPSEG-- 75 (208)
Q Consensus 5 ~~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~------~~-~d~vi~~~~~-- 75 (208)
.+.+.||++|++++++|+++||+|++++|++++.. ..+++.+.+|++|++++.+++ ++ +|.|+++.+.
T Consensus 3 lVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~---~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~ 79 (285)
T TIGR03649 3 LLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA---GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIP 79 (285)
T ss_pred EEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc---CCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCC
Confidence 34568999999999999999999999999987643 246788899999999999999 67 9999977331
Q ss_pred -------chhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhc-CCCEEEEeccccccCCCC---
Q 028525 76 -------FISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMAS-GIPYTIIRTGVLQNTPGG--- 144 (208)
Q Consensus 76 -------~~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~-~~~~tivRp~~~~~~~~~--- 144 (208)
.+.++|+++|++|||++||.+++... .... ..|+++++. +++||++||++++++...
T Consensus 80 ~~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~-------~~~~-----~~~~~l~~~~gi~~tilRp~~f~~~~~~~~~ 147 (285)
T TIGR03649 80 DLAPPMIKFIDFARSKGVRRFVLLSASIIEKGG-------PAMG-----QVHAHLDSLGGVEYTVLRPTWFMENFSEEFH 147 (285)
T ss_pred ChhHHHHHHHHHHHHcCCCEEEEeeccccCCCC-------chHH-----HHHHHHHhccCCCEEEEeccHHhhhhccccc
Confidence 14567888999999999987654311 1111 246778775 999999999988754311
Q ss_pred -----c-cceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 145 -----K-QGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 145 -----~-~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
. ..+....++....+++++|+|++++.++.++...++.|++.++. .+.+|+++++++++|++
T Consensus 148 ~~~~~~~~~~~~~~g~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~~ 216 (285)
T TIGR03649 148 VEAIRKENKIYSATGDGKIPFVSADDIARVAYRALTDKVAPNTDYVVLGPELLTYDDVAEILSRVLGRK 216 (285)
T ss_pred ccccccCCeEEecCCCCccCcccHHHHHHHHHHHhcCCCcCCCeEEeeCCccCCHHHHHHHHHHHhCCc
Confidence 0 11222234455778999999999999999887778899998755 49999999999999986
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-25 Score=168.19 Aligned_cols=199 Identities=21% Similarity=0.218 Sum_probs=141.3
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchh--hhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC---Cc-----
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRN--AMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE---GF----- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~--~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~---~~----- 76 (208)
-+.||.+|+.+++.|++.+|+|++++|+.++ ...+...+++++.+|+.|++++.++|+|+|+||++.+ ..
T Consensus 4 ~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~ 83 (233)
T PF05368_consen 4 TGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQ 83 (233)
T ss_dssp ETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHH
T ss_pred ECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhh
Confidence 4679999999999999999999999999865 3333345789999999999999999999999998733 21
Q ss_pred --hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCC----------C
Q 028525 77 --ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPG----------G 144 (208)
Q Consensus 77 --~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~----------~ 144 (208)
+.++++++||++||+.|....+.......+-.. ....+...|+++++.+++||+||||.+++... .
T Consensus 84 ~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~--~~~~k~~ie~~l~~~~i~~t~i~~g~f~e~~~~~~~~~~~~~~ 161 (233)
T PF05368_consen 84 KNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIP--HFDQKAEIEEYLRESGIPYTIIRPGFFMENLLPPFAPVVDIKK 161 (233)
T ss_dssp HHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHH--HHHHHHHHHHHHHHCTSEBEEEEE-EEHHHHHTTTHHTTCSCC
T ss_pred hhHHHhhhccccceEEEEEecccccccccccccch--hhhhhhhhhhhhhhccccceeccccchhhhhhhhhcccccccc
Confidence 567899999999986444343422211222111 11122257899999999999999999875321 1
Q ss_pred cc-ceeee-cCCcCCCc-ccHHHHHHHHHHHhhCCCCC--CcEEEEeeCCcchhhHHHHHHHHhhhcC
Q 028525 145 KQ-GFQFE-EGCAANGS-LSKEDAAFICVEALESIPQT--GLIFEVVNGEEKVSDWKKCFSRLMEKTG 207 (208)
Q Consensus 145 ~~-~~~~~-~~~~~~~~-v~~~Dva~~~~~~l~~~~~~--~~~~~i~~~~~~~~e~~~~~~~~~~~~~ 207 (208)
.. .+.+. .+.....+ ++.+|+|++++.++.+|... ++.+.+++...+.+|+++++++.+|++-
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p~~~~~~~~~~~~~~~~t~~eia~~~s~~~G~~v 229 (233)
T PF05368_consen 162 SKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLDPEKHNNGKTIFLAGETLTYNEIAAILSKVLGKKV 229 (233)
T ss_dssp TSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHSGGGTTEEEEEEEGGGEEEHHHHHHHHHHHHTSEE
T ss_pred cceEEEEccCCCccccccccHHHHHHHHHHHHcChHHhcCCEEEEeCCCCCCHHHHHHHHHHHHCCcc
Confidence 11 12232 22323445 48899999999999998754 6777877544699999999999999863
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=166.33 Aligned_cols=195 Identities=15% Similarity=0.144 Sum_probs=137.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh------hhhhc--CCceEEEEcCCCCHHHHHHHhcCCCEEEEc-CCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN------AMESF--GTYVESMAGDASNKKFLKTALRGVRSIICP-SEG--- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~------~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~~~--- 75 (208)
+++|+||+++++.||++||+|++.+|++++ +.++. ..+...+.+|+.|++++.++++|||.|||+ ++-
T Consensus 13 GAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~Asp~~~~ 92 (327)
T KOG1502|consen 13 GASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHTASPVDFD 92 (327)
T ss_pred CCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEeCccCCCC
Confidence 579999999999999999999999999886 22222 236899999999999999999999999987 320
Q ss_pred -c----------------hhhhhhhcC-CCeEEEeceeeeccCCCC-----------cc---cccc------hhHHHhHH
Q 028525 76 -F----------------ISNAGSLKG-VQHVILLSQLSVYRGSGG-----------IQ---ALMK------GNARKLAE 117 (208)
Q Consensus 76 -~----------------~~~a~~~~g-v~~~v~~Ss~~~~~~~~~-----------~~---~~~~------~~~~~~~~ 117 (208)
. ..+++++.. |||||++||+.+-....+ .| .|.. ...|.+++
T Consensus 93 ~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~~Y~~sK~lAE 172 (327)
T KOG1502|consen 93 LEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKLWYALSKTLAE 172 (327)
T ss_pred CCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhHHHHHHHHHHHH
Confidence 0 234566665 999999999876431100 01 0100 01344443
Q ss_pred -HHHHHHHhcCCCEEEEeccccccCCCCcc--c---e--eeecC------CcCCCcccHHHHHHHHHHHhhCCCCCCcEE
Q 028525 118 -QDESMLMASGIPYTIIRTGVLQNTPGGKQ--G---F--QFEEG------CAANGSLSKEDAAFICVEALESIPQTGLIF 183 (208)
Q Consensus 118 -~~e~~l~~~~~~~tivRp~~~~~~~~~~~--~---~--~~~~~------~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~ 183 (208)
++-++..+.+++.+.+.|+.++++..... . . .+-.+ .....+|+++|+|.+.+.++++|.+.| .|
T Consensus 173 kaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~~n~~~~~VdVrDVA~AHv~a~E~~~a~G-Ry 251 (327)
T KOG1502|consen 173 KAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETYPNFWLAFVDVRDVALAHVLALEKPSAKG-RY 251 (327)
T ss_pred HHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccCCCCceeeEeHHHHHHHHHHHHcCcccCc-eE
Confidence 24455567899999999999987543220 0 0 00011 112447999999999999999998875 47
Q ss_pred EEeeCCcchhhHHHHHHHHh
Q 028525 184 EVVNGEEKVSDWKKCFSRLM 203 (208)
Q Consensus 184 ~i~~~~~~~~e~~~~~~~~~ 203 (208)
.+.++.....|+++.+.+..
T Consensus 252 ic~~~~~~~~ei~~~l~~~~ 271 (327)
T KOG1502|consen 252 ICVGEVVSIKEIADILRELF 271 (327)
T ss_pred EEecCcccHHHHHHHHHHhC
Confidence 77766667889998887764
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=166.38 Aligned_cols=200 Identities=16% Similarity=0.163 Sum_probs=140.5
Q ss_pred ccccCccHHHHHHHHHhCC--CcEEEEEcCchhhh--hhcCCc-eEEEEcCCCCHHHHHHHhcCCCEEEEc-CC----C-
Q 028525 7 MKRKKMNFRMVILSLIVKR--TRIKALVKDKRNAM--ESFGTY-VESMAGDASNKKFLKTALRGVRSIICP-SE----G- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~--~~~~~~-v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~~----~- 75 (208)
.+++|++|++|+++|+++| ++|++++|.+.... .....+ .+++++|++|.+++.++++++|+|||+ +. +
T Consensus 3 TGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~~ 82 (280)
T PF01073_consen 3 TGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPWGD 82 (280)
T ss_pred EcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccccCc
Confidence 4789999999999999999 89999998776532 222223 349999999999999999999999987 21 1
Q ss_pred ---------------chhhhhhhcCCCeEEEeceeeeccC---CCC------cccccc----hhHHHhHHHHHHHHHh-c
Q 028525 76 ---------------FISNAGSLKGVQHVILLSQLSVYRG---SGG------IQALMK----GNARKLAEQDESMLMA-S 126 (208)
Q Consensus 76 ---------------~~~~a~~~~gv~~~v~~Ss~~~~~~---~~~------~~~~~~----~~~~~~~~~~e~~l~~-~ 126 (208)
.+.++|++.+++||||+||.+++.. ..+ .+++.. .+++. +.++|+++.+ .
T Consensus 83 ~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~S-K~~AE~~V~~a~ 161 (280)
T PF01073_consen 83 YPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAES-KALAEKAVLEAN 161 (280)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHH-HHHHHHHHHhhc
Confidence 1356788899999999999987642 111 111111 11111 1246766543 2
Q ss_pred --------CCCEEEEeccccccCCCCc-------------cceeeecCCcCCCcccHHHHHHHHHHHhh---CC----CC
Q 028525 127 --------GIPYTIIRTGVLQNTPGGK-------------QGFQFEEGCAANGSLSKEDAAFICVEALE---SI----PQ 178 (208)
Q Consensus 127 --------~~~~tivRp~~~~~~~~~~-------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~---~~----~~ 178 (208)
.+.+++|||+.+++..... ..+.++.+....++++++|+|++++.+.+ ++ ..
T Consensus 162 ~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~ 241 (280)
T PF01073_consen 162 GSELKNGGRLRTCALRPAGIYGPGDQRLVPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQALLEPGKPERV 241 (280)
T ss_pred ccccccccceeEEEEeccEEeCcccccccchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHHHhccccccccC
Confidence 3899999999998753211 11223333344678999999999987754 22 35
Q ss_pred CCcEEEEeeCCc-c-hhhHHHHHHHHhhhcC
Q 028525 179 TGLIFEVVNGEE-K-VSDWKKCFSRLMEKTG 207 (208)
Q Consensus 179 ~~~~~~i~~~~~-~-~~e~~~~~~~~~~~~~ 207 (208)
.|+.|+|+++++ + +.|+...+.+.+|.+.
T Consensus 242 ~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~ 272 (280)
T PF01073_consen 242 AGQAYFITDGEPVPSFWDFMRPLWEALGYPP 272 (280)
T ss_pred CCcEEEEECCCccCcHHHHHHHHHHHCCCCC
Confidence 789999998775 5 7899998888888653
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-24 Score=172.67 Aligned_cols=195 Identities=15% Similarity=0.131 Sum_probs=142.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh-----------hhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM-----------ESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~-----------~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~- 75 (208)
++||+||++|+++|+++||+|++++|+..+.. ++...+++++.+|+.|.+.+. ...++|+||++.+.
T Consensus 63 GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~-~~~~~d~Vi~~~~~~ 141 (378)
T PLN00016 63 GGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKV-AGAGFDVVYDNNGKD 141 (378)
T ss_pred CCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhh-ccCCccEEEeCCCCC
Confidence 67999999999999999999999999875421 111235899999998744332 23578999987332
Q ss_pred -----chhhhhhhcCCCeEEEeceeeeccCCCC--c---ccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCCc
Q 028525 76 -----FISNAGSLKGVQHVILLSQLSVYRGSGG--I---QALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGK 145 (208)
Q Consensus 76 -----~~~~a~~~~gv~~~v~~Ss~~~~~~~~~--~---~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~ 145 (208)
.+.+++++.|++||||+||.++|+.... . .+..+.. .+..+|.++++.+++|+++||+.+++.....
T Consensus 142 ~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~~~~~p~~---sK~~~E~~l~~~~l~~~ilRp~~vyG~~~~~ 218 (378)
T PLN00016 142 LDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEGDAVKPKA---GHLEVEAYLQKLGVNWTSFRPQYIYGPGNNK 218 (378)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCCCcCCCcc---hHHHHHHHHHHcCCCeEEEeceeEECCCCCC
Confidence 2567888899999999999999863211 1 0111111 2235788899899999999999998643211
Q ss_pred -------------cceee-ecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 146 -------------QGFQF-EEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 146 -------------~~~~~-~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
..+.+ +.+.+...+++++|+|++++.+++++...+++||++++. .+..|+++.+.+.+|.+
T Consensus 219 ~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~ 294 (378)
T PLN00016 219 DCEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFALVVGNPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFP 294 (378)
T ss_pred chHHHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHHHHhcCccccCCEEEecCCCccCHHHHHHHHHHHhCCC
Confidence 11111 223334568899999999999998877678999999766 59999999999998875
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=169.51 Aligned_cols=192 Identities=15% Similarity=0.135 Sum_probs=137.1
Q ss_pred cccCccHHHHHHHHHhC-CCcEEEEEcCchhhhhhc-------CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC---C-
Q 028525 8 KRKKMNFRMVILSLIVK-RTRIKALVKDKRNAMESF-------GTYVESMAGDASNKKFLKTALRGVRSIICPSE---G- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~-g~~V~~~~R~~~~~~~~~-------~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~---~- 75 (208)
++||+||++|+++|+++ ||+|++++|+.++...+. ..+++++.+|++|.+.+.++++++|+|||+++ .
T Consensus 21 GgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHlAa~~~~~ 100 (386)
T PLN02427 21 GAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINLAAICTPA 100 (386)
T ss_pred CCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEcccccChh
Confidence 57999999999999998 599999998866533221 23689999999999999999999999998721 0
Q ss_pred -c-----------------hhhhhhhcCCCeEEEeceeeeccCCC--------Cc-------------------------
Q 028525 76 -F-----------------ISNAGSLKGVQHVILLSQLSVYRGSG--------GI------------------------- 104 (208)
Q Consensus 76 -~-----------------~~~a~~~~gv~~~v~~Ss~~~~~~~~--------~~------------------------- 104 (208)
. +.+++++.+ +||||+||..+|+... +.
T Consensus 101 ~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~~~~~~~~~~~~~~ 179 (386)
T PLN02427 101 DYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESPCIFGSIEKQR 179 (386)
T ss_pred hhhhChHHHHHHHHHHHHHHHHHHHhcC-CEEEEEeeeeeeCCCcCCCCCcccccccccccccccccccccccCCCCccc
Confidence 0 123455566 8999999998886311 10
Q ss_pred ccccchhHHHhHHHHHHHHH----hcCCCEEEEeccccccCCCC-------------------------cccee-eecCC
Q 028525 105 QALMKGNARKLAEQDESMLM----ASGIPYTIIRTGVLQNTPGG-------------------------KQGFQ-FEEGC 154 (208)
Q Consensus 105 ~~~~~~~~~~~~~~~e~~l~----~~~~~~tivRp~~~~~~~~~-------------------------~~~~~-~~~~~ 154 (208)
++|.. .|. .+|+++. ..+++++++||+.+++.... +..+. ++.+.
T Consensus 180 ~~Y~~--sK~---~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~g~ 254 (386)
T PLN02427 180 WSYAC--AKQ---LIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGQ 254 (386)
T ss_pred cchHH--HHH---HHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhcCCCeEEECCCC
Confidence 01111 222 3555554 36899999999999874311 00011 11223
Q ss_pred cCCCcccHHHHHHHHHHHhhCCC-CCCcEEEEeeC--CcchhhHHHHHHHHhhh
Q 028525 155 AANGSLSKEDAAFICVEALESIP-QTGLIFEVVNG--EEKVSDWKKCFSRLMEK 205 (208)
Q Consensus 155 ~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~i~~~--~~~~~e~~~~~~~~~~~ 205 (208)
+...+++++|+|++++.+++++. ..++.||++++ ..+++|+++.+.+.++.
T Consensus 255 ~~r~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~ 308 (386)
T PLN02427 255 SQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAK 308 (386)
T ss_pred ceECcEeHHHHHHHHHHHHhCcccccCceEEeCCCCCCccHHHHHHHHHHHhcc
Confidence 33578999999999999998764 45789999975 35999999999998874
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=166.90 Aligned_cols=195 Identities=8% Similarity=0.004 Sum_probs=138.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh----hh-------cCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM----ES-------FGTYVESMAGDASNKKFLKTALRGVRSIICPSE-- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~----~~-------~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~-- 74 (208)
++||+||++|+++|+++|++|++++|...... .. ...++.++.+|+.|.+.+..+++++|+|||++.
T Consensus 22 GatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d~ViHlAa~~ 101 (348)
T PRK15181 22 GVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVDYVLHQAALG 101 (348)
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCCEEEECcccc
Confidence 57999999999999999999999998653211 11 013578899999999999999999999998721
Q ss_pred C--------------------chhhhhhhcCCCeEEEeceeeeccCCC-----------CcccccchhHHHhHHH-HHHH
Q 028525 75 G--------------------FISNAGSLKGVQHVILLSQLSVYRGSG-----------GIQALMKGNARKLAEQ-DESM 122 (208)
Q Consensus 75 ~--------------------~~~~a~~~~gv~~~v~~Ss~~~~~~~~-----------~~~~~~~~~~~~~~~~-~e~~ 122 (208)
. .+.+++++.++++|||+||..+|+... |..+|.. .|...+. ++.+
T Consensus 102 ~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~--sK~~~e~~~~~~ 179 (348)
T PRK15181 102 SVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEERIGRPLSPYAV--TKYVNELYADVF 179 (348)
T ss_pred CchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCCCCCCCCChhhH--HHHHHHHHHHHH
Confidence 1 034567788999999999998886211 1222322 2332221 2223
Q ss_pred HHhcCCCEEEEeccccccCCCC--c----------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCc
Q 028525 123 LMASGIPYTIIRTGVLQNTPGG--K----------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIP--QTGL 181 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~--~----------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~ 181 (208)
.+..+++++++||+.+++.... + ..+. ++.+.+...++|++|+|++++.++..+. ..++
T Consensus 180 ~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~~~~~~~ 259 (348)
T PRK15181 180 ARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANLLSATTNDLASKNK 259 (348)
T ss_pred HHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhcccccCCCC
Confidence 3456999999999999874211 0 1111 2233444678999999999998776432 3578
Q ss_pred EEEEeeCCc-chhhHHHHHHHHhh
Q 028525 182 IFEVVNGEE-KVSDWKKCFSRLME 204 (208)
Q Consensus 182 ~~~i~~~~~-~~~e~~~~~~~~~~ 204 (208)
+||++++.. +++|+++.+.+.++
T Consensus 260 ~yni~~g~~~s~~e~~~~i~~~~~ 283 (348)
T PRK15181 260 VYNVAVGDRTSLNELYYLIRDGLN 283 (348)
T ss_pred EEEecCCCcEeHHHHHHHHHHHhC
Confidence 999998775 99999999998876
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=155.82 Aligned_cols=195 Identities=25% Similarity=0.302 Sum_probs=138.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc--CCceEEEEcCCCC-HHHHHHHh-cCCCEEEEcCCC--------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF--GTYVESMAGDASN-KKFLKTAL-RGVRSIICPSEG-------- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~--~~~v~~v~~Dl~d-~~~l~~~~-~~~d~vi~~~~~-------- 75 (208)
+.||+||++++++|+++||+|++++|++++..... ..+++++.+|++| .+.+.+.+ .++|+||++++.
T Consensus 24 GasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~~~~~~~~~ 103 (251)
T PLN00141 24 GATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGFRRSFDPFA 103 (251)
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCCCcCCCCCC
Confidence 46999999999999999999999999987754332 2368999999998 57788888 689999977221
Q ss_pred ----------chhhhhhhcCCCeEEEeceeeeccCCCC--ccc-ccchhH----HHhHHHHHHHHHhcCCCEEEEecccc
Q 028525 76 ----------FISNAGSLKGVQHVILLSQLSVYRGSGG--IQA-LMKGNA----RKLAEQDESMLMASGIPYTIIRTGVL 138 (208)
Q Consensus 76 ----------~~~~a~~~~gv~~~v~~Ss~~~~~~~~~--~~~-~~~~~~----~~~~~~~e~~l~~~~~~~tivRp~~~ 138 (208)
.+.+++++.+++|||++||.++|+...+ ..+ |...+. ...+..+|+++++.+++|++|||+++
T Consensus 104 ~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~~~~~~~~~~~~~~~~k~~~e~~l~~~gi~~~iirpg~~ 183 (251)
T PLN00141 104 PWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQILNPAYIFLNLFGLTLVAKLQAEKYIRKSGINYTIVRPGGL 183 (251)
T ss_pred ceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccccCcchhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECCCc
Confidence 0245567788999999999988753211 111 111111 11223567888889999999999999
Q ss_pred ccCCCCccceeeecCC-cCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCc-chhhHHHHHHHHh
Q 028525 139 QNTPGGKQGFQFEEGC-AANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEE-KVSDWKKCFSRLM 203 (208)
Q Consensus 139 ~~~~~~~~~~~~~~~~-~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~-~~~e~~~~~~~~~ 203 (208)
++.+..+. +.....+ ...++++++|+|++++.++..+...+.++.+.+.+. .-.++.+++..+.
T Consensus 184 ~~~~~~~~-~~~~~~~~~~~~~i~~~dvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (251)
T PLN00141 184 TNDPPTGN-IVMEPEDTLYEGSISRDQVAEVAVEALLCPESSYKVVEIVARADAPKRSYKDLFASIK 249 (251)
T ss_pred cCCCCCce-EEECCCCccccCcccHHHHHHHHHHHhcChhhcCcEEEEecCCCCCchhHHHHHHHhh
Confidence 87654333 2222222 224689999999999999998887788899887554 3355555555543
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=167.89 Aligned_cols=191 Identities=18% Similarity=0.241 Sum_probs=142.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh------h--hcCCceEEEEcCCCCHHHHHHHhc----CCCEEEEcCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM------E--SFGTYVESMAGDASNKKFLKTALR----GVRSIICPSE- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~------~--~~~~~v~~v~~Dl~d~~~l~~~~~----~~d~vi~~~~- 74 (208)
++||+||++++++|+++||+|++++|+.++.. . ....+++++.+|++|++++.++++ ++|+||+|.+
T Consensus 67 GatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~D~Vi~~aa~ 146 (390)
T PLN02657 67 GATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPVDVVVSCLAS 146 (390)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCCcEEEECCcc
Confidence 46999999999999999999999999875421 0 112468999999999999999998 5899998721
Q ss_pred ---C-------------chhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHh--cCCCEEEEecc
Q 028525 75 ---G-------------FISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMA--SGIPYTIIRTG 136 (208)
Q Consensus 75 ---~-------------~~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~--~~~~~tivRp~ 136 (208)
. .+.+++++.|++|||++||.+++.+ ...|.. .| ...|++++. ++++|+++||+
T Consensus 147 ~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~p---~~~~~~--sK---~~~E~~l~~~~~gl~~tIlRp~ 218 (390)
T PLN02657 147 RTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQKP---LLEFQR--AK---LKFEAELQALDSDFTYSIVRPT 218 (390)
T ss_pred CCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccCc---chHHHH--HH---HHHHHHHHhccCCCCEEEEccH
Confidence 1 0345677889999999999987642 222221 22 245667765 89999999999
Q ss_pred ccccCCC-------Cccce-eeecCCcC-CCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC--CcchhhHHHHHHHHhhh
Q 028525 137 VLQNTPG-------GKQGF-QFEEGCAA-NGSLSKEDAAFICVEALESIPQTGLIFEVVNG--EEKVSDWKKCFSRLMEK 205 (208)
Q Consensus 137 ~~~~~~~-------~~~~~-~~~~~~~~-~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~--~~~~~e~~~~~~~~~~~ 205 (208)
.+++... .+..+ .++.+... ..+++++|+|.+++.++.++...+++|+++++ ..+.+|+++.+.+++|+
T Consensus 219 ~~~~~~~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~~~~~~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~ 298 (390)
T PLN02657 219 AFFKSLGGQVEIVKDGGPYVMFGDGKLCACKPISEADLASFIADCVLDESKINKVLPIGGPGKALTPLEQGEMLFRILGK 298 (390)
T ss_pred HHhcccHHHHHhhccCCceEEecCCcccccCceeHHHHHHHHHHHHhCccccCCEEEcCCCCcccCHHHHHHHHHHHhCC
Confidence 9885421 11222 23333322 35699999999999999877777899999864 35999999999999987
Q ss_pred c
Q 028525 206 T 206 (208)
Q Consensus 206 ~ 206 (208)
+
T Consensus 299 ~ 299 (390)
T PLN02657 299 E 299 (390)
T ss_pred C
Confidence 5
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-22 Score=160.49 Aligned_cols=197 Identities=13% Similarity=0.032 Sum_probs=136.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC-----C-------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE-----G------- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~-----~------- 75 (208)
++||+||++|+++|+++||+|++++|............++++.+|++|.+.+.+++.++|+|||+++ +
T Consensus 28 GgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~ 107 (370)
T PLN02695 28 GAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHS 107 (370)
T ss_pred CCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcccccCCccccccCch
Confidence 4699999999999999999999999865432111111367889999999999999999999998721 0
Q ss_pred -----------chhhhhhhcCCCeEEEeceeeeccCCC--------------Ccccccchh-HHHhHHH-HHHHHHhcCC
Q 028525 76 -----------FISNAGSLKGVQHVILLSQLSVYRGSG--------------GIQALMKGN-ARKLAEQ-DESMLMASGI 128 (208)
Q Consensus 76 -----------~~~~a~~~~gv~~~v~~Ss~~~~~~~~--------------~~~~~~~~~-~~~~~~~-~e~~l~~~~~ 128 (208)
.+.+++++.++++|||+||..+|+... +..+...+. .|...+. +..+.+..++
T Consensus 108 ~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg~sK~~~E~~~~~~~~~~g~ 187 (370)
T PLN02695 108 VIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGI 187 (370)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 023556778999999999998886321 111211111 2332221 2223345799
Q ss_pred CEEEEeccccccCCCC---c----------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC
Q 028525 129 PYTIIRTGVLQNTPGG---K----------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNG 188 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~---~----------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~ 188 (208)
+++++||+.+++.... + ..+. ++.+.+..++++++|++++++.+++++ .++.||++++
T Consensus 188 ~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~~~~~~~--~~~~~nv~~~ 265 (370)
T PLN02695 188 ECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVLRLTKSD--FREPVNIGSD 265 (370)
T ss_pred CEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHHHHHhcc--CCCceEecCC
Confidence 9999999999874321 0 0111 123344467899999999999987754 3578999987
Q ss_pred Cc-chhhHHHHHHHHhhhc
Q 028525 189 EE-KVSDWKKCFSRLMEKT 206 (208)
Q Consensus 189 ~~-~~~e~~~~~~~~~~~~ 206 (208)
.. +++|+++.+.+..+++
T Consensus 266 ~~~s~~el~~~i~~~~g~~ 284 (370)
T PLN02695 266 EMVSMNEMAEIALSFENKK 284 (370)
T ss_pred CceeHHHHHHHHHHHhCCC
Confidence 64 9999999999888753
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-22 Score=151.15 Aligned_cols=197 Identities=15% Similarity=0.146 Sum_probs=140.6
Q ss_pred hhccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCc-eEEEEcCCCCHHHHHHHhc--CCCEEEEcCCC------
Q 028525 5 KKMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTY-VESMAGDASNKKFLKTALR--GVRSIICPSEG------ 75 (208)
Q Consensus 5 ~~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~-v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~------ 75 (208)
.+-++.|+|||+.+.+|++.||+|++++.-.....+..... ++++++|+.|.+.+.+.|+ ..|+|||.++.
T Consensus 4 LVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~VgES 83 (329)
T COG1087 4 LVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASISVGES 83 (329)
T ss_pred EEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECccccccchh
Confidence 34578999999999999999999999987544332222222 6899999999999999996 57999986321
Q ss_pred ----------------chhhhhhhcCCCeEEEeceeeeccCC-----------CCcccccchhHHHhHHHHHHHHH----
Q 028525 76 ----------------FISNAGSLKGVQHVILLSQLSVYRGS-----------GGIQALMKGNARKLAEQDESMLM---- 124 (208)
Q Consensus 76 ----------------~~~~a~~~~gv~~~v~~Ss~~~~~~~-----------~~~~~~~~~~~~~~~~~~e~~l~---- 124 (208)
.+.++|++.|+++|||.||..+|+.+ .|.+||.. .|. ..|+.|+
T Consensus 84 v~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~~~~~p~NPYG~--sKl---m~E~iL~d~~~ 158 (329)
T COG1087 84 VQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISETSPLAPINPYGR--SKL---MSEEILRDAAK 158 (329)
T ss_pred hhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCCCCCCCCCcchh--HHH---HHHHHHHHHHH
Confidence 14678999999999999999999732 34456655 333 3456665
Q ss_pred hcCCCEEEEecccccc--------CCC--Cc-------------c-cee-ee------cCCcCCCcccHHHHHHHHHHHh
Q 028525 125 ASGIPYTIIRTGVLQN--------TPG--GK-------------Q-GFQ-FE------EGCAANGSLSKEDAAFICVEAL 173 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~--------~~~--~~-------------~-~~~-~~------~~~~~~~~v~~~Dva~~~~~~l 173 (208)
..+++++++|--...+ +.. .. + .+. ++ .+......||+.|+|++.+.++
T Consensus 159 a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DLA~aH~~Al 238 (329)
T COG1087 159 ANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDLADAHVLAL 238 (329)
T ss_pred hCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHHHHHHHHHH
Confidence 4689999999433322 110 00 0 011 11 1122356799999999999988
Q ss_pred hCCCCC--CcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 174 ESIPQT--GLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 174 ~~~~~~--~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
+.-... ..+||+++|. .|+.|+++.+++++|++
T Consensus 239 ~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ 274 (329)
T COG1087 239 KYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRD 274 (329)
T ss_pred HHHHhCCceeEEEccCCCceeHHHHHHHHHHHhCCc
Confidence 643322 3689999988 59999999999999975
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=157.57 Aligned_cols=193 Identities=13% Similarity=0.154 Sum_probs=135.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh-----hhhc--CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC-----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA-----MESF--GTYVESMAGDASNKKFLKTALRGVRSIICPSEG----- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-----~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~----- 75 (208)
+++|+||++|+++|+++||+|++++|+.++. .... ..+++++.+|++|.+++.++++++|+|||+++.
T Consensus 17 GatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~ 96 (342)
T PLN02214 17 GAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHTASPVTDDP 96 (342)
T ss_pred CCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEecCCCCCCH
Confidence 4699999999999999999999999986542 1111 135888999999999999999999999987321
Q ss_pred ------------chhhhhhhcCCCeEEEecee-eeccCCC--C---c------------ccccchh-HHHhHHHHHHHH-
Q 028525 76 ------------FISNAGSLKGVQHVILLSQL-SVYRGSG--G---I------------QALMKGN-ARKLAEQDESML- 123 (208)
Q Consensus 76 ------------~~~~a~~~~gv~~~v~~Ss~-~~~~~~~--~---~------------~~~~~~~-~~~~~~~~e~~l- 123 (208)
.+.+++.+.+++|||++||. .+|+... + . .+...|. .|. .+|+++
T Consensus 97 ~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y~~sK~---~aE~~~~ 173 (342)
T PLN02214 97 EQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKM---VAEQAAW 173 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHHHHHHH---HHHHHHH
Confidence 03456777899999999996 4664211 0 0 0111111 222 234443
Q ss_pred ---HhcCCCEEEEeccccccCCCCcc--c-------eeee----cCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEee
Q 028525 124 ---MASGIPYTIIRTGVLQNTPGGKQ--G-------FQFE----EGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVN 187 (208)
Q Consensus 124 ---~~~~~~~tivRp~~~~~~~~~~~--~-------~~~~----~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~ 187 (208)
++.+++++++||+.+++...... . ...+ .+.....+++++|+|++++.+++++.. +..||+++
T Consensus 174 ~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~V~Dva~a~~~al~~~~~-~g~yn~~~ 252 (342)
T PLN02214 174 ETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVLVYEAPSA-SGRYLLAE 252 (342)
T ss_pred HHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCcccCCCCCcCeeEHHHHHHHHHHHHhCccc-CCcEEEec
Confidence 44699999999999987532110 0 0011 112235789999999999999987654 45799987
Q ss_pred CCcchhhHHHHHHHHhh
Q 028525 188 GEEKVSDWKKCFSRLME 204 (208)
Q Consensus 188 ~~~~~~e~~~~~~~~~~ 204 (208)
+..+.+|+++.+.+..+
T Consensus 253 ~~~~~~el~~~i~~~~~ 269 (342)
T PLN02214 253 SARHRGEVVEILAKLFP 269 (342)
T ss_pred CCCCHHHHHHHHHHHCC
Confidence 66799999999998874
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=160.89 Aligned_cols=197 Identities=18% Similarity=0.201 Sum_probs=139.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc---------------CCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF---------------GTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~---------------~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+++|+||++++++|+++||+|++++|+.++..... ..+++++.+|++|.+++.+++.++|+||++
T Consensus 87 GATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiDiVVn~ 166 (576)
T PLN03209 87 GATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNASVVICC 166 (576)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCCEEEEc
Confidence 46999999999999999999999999987643211 124789999999999999999999999987
Q ss_pred CCCc--------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccch-hHHHhHHHHHHHHHhcCCCEE
Q 028525 73 SEGF--------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKG-NARKLAEQDESMLMASGIPYT 131 (208)
Q Consensus 73 ~~~~--------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~-~~~~~~~~~e~~l~~~~~~~t 131 (208)
.+.. +.+++...+++|||++||.+++....+...+... ....+++.+|++|+.+|++|+
T Consensus 167 AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g~p~~~~~sk~~~~~~KraaE~~L~~sGIrvT 246 (576)
T PLN03209 167 IGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVGFPAAILNLFWGVLCWKRKAEEALIASGLPYT 246 (576)
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccCccccchhhHHHHHHHHHHHHHHHHHcCCCEE
Confidence 3210 2345667799999999999864211111112111 122344567888999999999
Q ss_pred EEeccccccCCCC---ccceeeecCC-cCCCcccHHHHHHHHHHHhhCCC-CCCcEEEEeeCCc-chhhHHHHHHHHhh
Q 028525 132 IIRTGVLQNTPGG---KQGFQFEEGC-AANGSLSKEDAAFICVEALESIP-QTGLIFEVVNGEE-KVSDWKKCFSRLME 204 (208)
Q Consensus 132 ivRp~~~~~~~~~---~~~~~~~~~~-~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~i~~~~~-~~~e~~~~~~~~~~ 204 (208)
+||||++...... ...+.....+ ...+.++++|||++++.++.++. ..+++|.+.+++. +...+.++|.++..
T Consensus 247 IVRPG~L~tp~d~~~~t~~v~~~~~d~~~gr~isreDVA~vVvfLasd~~as~~kvvevi~~~~~p~~~~~~~~~~ip~ 325 (576)
T PLN03209 247 IVRPGGMERPTDAYKETHNLTLSEEDTLFGGQVSNLQVAELMACMAKNRRLSYCKVVEVIAETTAPLTPMEELLAKIPS 325 (576)
T ss_pred EEECCeecCCccccccccceeeccccccCCCccCHHHHHHHHHHHHcCchhccceEEEEEeCCCCCCCCHHHHHHhccc
Confidence 9999998643111 1112221112 22566899999999999998775 6789999998773 66777777766543
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-21 Score=154.40 Aligned_cols=194 Identities=11% Similarity=0.136 Sum_probs=136.2
Q ss_pred cccCccHHHHHHHHHhC-CCcEEEEEcCchhhhhhcC-CceEEEEcCCC-CHHHHHHHhcCCCEEEEcC----CCc----
Q 028525 8 KRKKMNFRMVILSLIVK-RTRIKALVKDKRNAMESFG-TYVESMAGDAS-NKKFLKTALRGVRSIICPS----EGF---- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~-g~~V~~~~R~~~~~~~~~~-~~v~~v~~Dl~-d~~~l~~~~~~~d~vi~~~----~~~---- 76 (208)
++||+||++|+++|+++ ||+|++++|+..+...... .+++++.+|+. |.+.+.++++++|+|||++ +..
T Consensus 8 GatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~aa~~~~~~~~~~ 87 (347)
T PRK11908 8 GVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLVAIATPATYVKQ 87 (347)
T ss_pred CCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECcccCChHHhhcC
Confidence 57999999999999987 6999999997765433332 36899999997 7788888999999999862 110
Q ss_pred --------------hhhhhhhcCCCeEEEeceeeeccCCCC------cc-----c----ccchh-HHHhHHHHHHHHH--
Q 028525 77 --------------ISNAGSLKGVQHVILLSQLSVYRGSGG------IQ-----A----LMKGN-ARKLAEQDESMLM-- 124 (208)
Q Consensus 77 --------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~------~~-----~----~~~~~-~~~~~~~~e~~l~-- 124 (208)
+.+++++.+ ++|||+||..+|+.... .. + ...+. .|. .+|++++
T Consensus 88 p~~~~~~n~~~~~~ll~aa~~~~-~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y~~sK~---~~e~~~~~~ 163 (347)
T PRK11908 88 PLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQ---LMDRVIWAY 163 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcC-CeEEEEecceeeccCCCcCcCccccccccCcCCCccchHHHHHH---HHHHHHHHH
Confidence 234566667 79999999988862110 00 1 00111 222 3444443
Q ss_pred --hcCCCEEEEeccccccCCCC----------------------ccceee-ecCCcCCCcccHHHHHHHHHHHhhCCC--
Q 028525 125 --ASGIPYTIIRTGVLQNTPGG----------------------KQGFQF-EEGCAANGSLSKEDAAFICVEALESIP-- 177 (208)
Q Consensus 125 --~~~~~~tivRp~~~~~~~~~----------------------~~~~~~-~~~~~~~~~v~~~Dva~~~~~~l~~~~-- 177 (208)
..+++++++||+.+++.... +..+.+ +.+.+...+++++|++++++.+++++.
T Consensus 164 ~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~~~~~~~~~ 243 (347)
T PRK11908 164 GMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKIIENKDGV 243 (347)
T ss_pred HHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccHHHHHHHHHHHHhCcccc
Confidence 47999999999988764210 011111 223334578999999999999998764
Q ss_pred CCCcEEEEeeC-C-cchhhHHHHHHHHhhh
Q 028525 178 QTGLIFEVVNG-E-EKVSDWKKCFSRLMEK 205 (208)
Q Consensus 178 ~~~~~~~i~~~-~-~~~~e~~~~~~~~~~~ 205 (208)
..++.||++++ . .+++|+++.+.+.++.
T Consensus 244 ~~g~~yni~~~~~~~s~~e~~~~i~~~~~~ 273 (347)
T PRK11908 244 ASGKIYNIGNPKNNHSVRELANKMLELAAE 273 (347)
T ss_pred CCCCeEEeCCCCCCcCHHHHHHHHHHHhcC
Confidence 45789999975 3 5999999999988874
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-21 Score=153.22 Aligned_cols=194 Identities=15% Similarity=0.141 Sum_probs=133.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh---hhhc-----CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC-C---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA---MESF-----GTYVESMAGDASNKKFLKTALRGVRSIICPSE-G--- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~---~~~~-----~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~-~--- 75 (208)
++||+||++++++|+++||+|++++|+.++. .... ..+++++.+|++|++++.++++++|+|||+++ .
T Consensus 12 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~~~~~~ 91 (322)
T PLN02986 12 GASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFHTASPVFFT 91 (322)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEEeCCCcCCC
Confidence 5799999999999999999999999987542 1111 13689999999999999999999999998722 0
Q ss_pred ---c--------------hhhhhhhc-CCCeEEEeceeeec--cCCC--C------------------cccccchhHHHh
Q 028525 76 ---F--------------ISNAGSLK-GVQHVILLSQLSVY--RGSG--G------------------IQALMKGNARKL 115 (208)
Q Consensus 76 ---~--------------~~~a~~~~-gv~~~v~~Ss~~~~--~~~~--~------------------~~~~~~~~~~~~ 115 (208)
. +.+++++. +++|||++||.+++ +... + ...|.. .|..
T Consensus 92 ~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y~~--sK~~ 169 (322)
T PLN02986 92 VKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNWYPL--SKIL 169 (322)
T ss_pred CCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhccccchHH--HHHH
Confidence 0 12345554 78999999998653 2110 0 011221 3333
Q ss_pred HH-HHHHHHHhcCCCEEEEeccccccCCCCcc-c--------eeeec---CCcCCCcccHHHHHHHHHHHhhCCCCCCcE
Q 028525 116 AE-QDESMLMASGIPYTIIRTGVLQNTPGGKQ-G--------FQFEE---GCAANGSLSKEDAAFICVEALESIPQTGLI 182 (208)
Q Consensus 116 ~~-~~e~~l~~~~~~~tivRp~~~~~~~~~~~-~--------~~~~~---~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~ 182 (208)
++ .+..+.++.+++++++||+.+++...... . +..+. +.+...+++++|+|++++.+++++... ..
T Consensus 170 aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~Dva~a~~~al~~~~~~-~~ 248 (322)
T PLN02986 170 AENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNLFNNRFYRFVDVRDVALAHIKALETPSAN-GR 248 (322)
T ss_pred HHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCCCCCcCcceeEHHHHHHHHHHHhcCcccC-Cc
Confidence 32 23344556799999999999986421110 0 00111 122246899999999999999877654 47
Q ss_pred EEEeeCCcchhhHHHHHHHHhh
Q 028525 183 FEVVNGEEKVSDWKKCFSRLME 204 (208)
Q Consensus 183 ~~i~~~~~~~~e~~~~~~~~~~ 204 (208)
|+++++..+++|+++++.+..+
T Consensus 249 yni~~~~~s~~e~~~~i~~~~~ 270 (322)
T PLN02986 249 YIIDGPIMSVNDIIDILRELFP 270 (322)
T ss_pred EEEecCCCCHHHHHHHHHHHCC
Confidence 9996554699999999988765
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-21 Score=156.66 Aligned_cols=196 Identities=16% Similarity=0.142 Sum_probs=133.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh--------------------hh---hhcCCceEEEEcCCCCHHHHHHHhc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN--------------------AM---ESFGTYVESMAGDASNKKFLKTALR 64 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~--------------------~~---~~~~~~v~~v~~Dl~d~~~l~~~~~ 64 (208)
+++|+||++|+++|+++||+|++++|.... .. .....+++++.+|++|.+.+.++++
T Consensus 54 GatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~d~~~v~~~l~ 133 (442)
T PLN02572 54 GGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDICDFEFLSEAFK 133 (442)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCCCHHHHHHHHH
Confidence 479999999999999999999998743210 00 0112368999999999999999998
Q ss_pred --CCCEEEEcCC----Cc---------------------hhhhhhhcCCC-eEEEeceeeeccCCC--------------
Q 028525 65 --GVRSIICPSE----GF---------------------ISNAGSLKGVQ-HVILLSQLSVYRGSG-------------- 102 (208)
Q Consensus 65 --~~d~vi~~~~----~~---------------------~~~a~~~~gv~-~~v~~Ss~~~~~~~~-------------- 102 (208)
++|+|||++. .. +.++++..+++ +||++||..+|+...
T Consensus 134 ~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~~~E~~i~~~~~~ 213 (442)
T PLN02572 134 SFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDIEEGYITITHNG 213 (442)
T ss_pred hCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCCCccccccccccc
Confidence 4799998731 10 23456677886 999999999886311
Q ss_pred -------Cc---ccccchhHHHhHHH-HHHHHHhcCCCEEEEeccccccCCCC---------------------------
Q 028525 103 -------GI---QALMKGNARKLAEQ-DESMLMASGIPYTIIRTGVLQNTPGG--------------------------- 144 (208)
Q Consensus 103 -------~~---~~~~~~~~~~~~~~-~e~~l~~~~~~~tivRp~~~~~~~~~--------------------------- 144 (208)
+. .+|.. .|...+. +..+.+..+++++++||+.+++....
T Consensus 214 ~e~~~~~~~~P~s~Yg~--SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~~~~~i~~~~~ 291 (442)
T PLN02572 214 RTDTLPYPKQASSFYHL--SKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGVFGTALNRFCV 291 (442)
T ss_pred ccccccCCCCCCCcchh--HHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcccchhhHHHHHHH
Confidence 11 12222 2332221 22233446999999999999874211
Q ss_pred ----ccce-eeecCCcCCCcccHHHHHHHHHHHhhCCCCCC--cEEEEeeCCcchhhHHHHHHHH---hhh
Q 028525 145 ----KQGF-QFEEGCAANGSLSKEDAAFICVEALESIPQTG--LIFEVVNGEEKVSDWKKCFSRL---MEK 205 (208)
Q Consensus 145 ----~~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~--~~~~i~~~~~~~~e~~~~~~~~---~~~ 205 (208)
+..+ .++.+.+...+++++|++++++.+++++...+ .+||++++..+++|+++.+.++ +++
T Consensus 292 ~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs~~~si~el~~~i~~~~~~~g~ 362 (442)
T PLN02572 292 QAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFTEQFSVNELAKLVTKAGEKLGL 362 (442)
T ss_pred HHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCCCceeHHHHHHHHHHHHHhhCC
Confidence 0111 12233334578999999999999998653333 5799976557999999999998 654
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=150.03 Aligned_cols=196 Identities=15% Similarity=0.113 Sum_probs=138.2
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC------c----
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG------F---- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~------~---- 76 (208)
-+++|+||++++++|+++||+|++++|++++.......+++++.+|++|.+++.++++++|+||++++. .
T Consensus 6 tG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~ 85 (328)
T TIGR03466 6 TGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAADYRLWAPDPEEM 85 (328)
T ss_pred ECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEeceecccCCCCHHHH
Confidence 367999999999999999999999999876643333346899999999999999999999999987211 0
Q ss_pred ----------hhhhhhhcCCCeEEEeceeeeccCC-C--------Cccc---ccchh-HHHhHHHHHHHHH----hcCCC
Q 028525 77 ----------ISNAGSLKGVQHVILLSQLSVYRGS-G--------GIQA---LMKGN-ARKLAEQDESMLM----ASGIP 129 (208)
Q Consensus 77 ----------~~~a~~~~gv~~~v~~Ss~~~~~~~-~--------~~~~---~~~~~-~~~~~~~~e~~l~----~~~~~ 129 (208)
+.+++...++++||++||..+|+.. . +..+ ...+. .|. .+|++++ ..+++
T Consensus 86 ~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~~~~Y~~sK~---~~e~~~~~~~~~~~~~ 162 (328)
T TIGR03466 86 YAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKF---LAEQAALEMAAEKGLP 162 (328)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCCCcccccChHHHHHH---HHHHHHHHHHHhcCCC
Confidence 2345667789999999998877521 1 0111 11111 222 3344443 36899
Q ss_pred EEEEeccccccCCCCcc----cee--------eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCcchhhHHH
Q 028525 130 YTIIRTGVLQNTPGGKQ----GFQ--------FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVSDWKK 197 (208)
Q Consensus 130 ~tivRp~~~~~~~~~~~----~~~--------~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~~~~e~~~ 197 (208)
++++||+.+++...... .+. .........+++.+|+|++++.+++++. .+..|++++...+.+|+++
T Consensus 163 ~~ilR~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~-~~~~~~~~~~~~s~~e~~~ 241 (328)
T TIGR03466 163 VVIVNPSTPIGPRDIKPTPTGRIIVDFLNGKMPAYVDTGLNLVHVDDVAEGHLLALERGR-IGERYILGGENLTLKQILD 241 (328)
T ss_pred EEEEeCCccCCCCCCCCCcHHHHHHHHHcCCCceeeCCCcceEEHHHHHHHHHHHHhCCC-CCceEEecCCCcCHHHHHH
Confidence 99999999886432110 000 0011223568899999999999998754 5678888744469999999
Q ss_pred HHHHHhhhc
Q 028525 198 CFSRLMEKT 206 (208)
Q Consensus 198 ~~~~~~~~~ 206 (208)
.+.+..|++
T Consensus 242 ~i~~~~g~~ 250 (328)
T TIGR03466 242 KLAEITGRP 250 (328)
T ss_pred HHHHHhCCC
Confidence 999988864
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.9e-21 Score=150.68 Aligned_cols=197 Identities=13% Similarity=0.097 Sum_probs=132.5
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhh---hh---c--CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC---
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAM---ES---F--GTYVESMAGDASNKKFLKTALRGVRSIICPSEG--- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~---~~---~--~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~--- 75 (208)
.+++|+||++++++|+++||+|++++|+..... .. . ..+++++.+|+.|++++..+++++|+|||+++.
T Consensus 10 tGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~~~~~ 89 (322)
T PLN02662 10 TGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHTASPFYH 89 (322)
T ss_pred ECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEeCCcccC
Confidence 457999999999999999999999999865321 11 1 236889999999999999999999999987210
Q ss_pred -------c-----------hhhhhhhc-CCCeEEEeceeee--ccCCC--C---------cccc------cch-hHHHhH
Q 028525 76 -------F-----------ISNAGSLK-GVQHVILLSQLSV--YRGSG--G---------IQAL------MKG-NARKLA 116 (208)
Q Consensus 76 -------~-----------~~~a~~~~-gv~~~v~~Ss~~~--~~~~~--~---------~~~~------~~~-~~~~~~ 116 (208)
. +.+++.+. +++|||++||.++ |+... + ..+. ..+ ..|...
T Consensus 90 ~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y~~sK~~~ 169 (322)
T PLN02662 90 DVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEESKLWYVLSKTLA 169 (322)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhcccchHHHHHHHH
Confidence 0 12334555 8899999999763 43110 0 0110 011 122222
Q ss_pred H-HHHHHHHhcCCCEEEEeccccccCCCCc--cc-------eeee---cCCcCCCcccHHHHHHHHHHHhhCCCCCCcEE
Q 028525 117 E-QDESMLMASGIPYTIIRTGVLQNTPGGK--QG-------FQFE---EGCAANGSLSKEDAAFICVEALESIPQTGLIF 183 (208)
Q Consensus 117 ~-~~e~~l~~~~~~~tivRp~~~~~~~~~~--~~-------~~~~---~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~ 183 (208)
+ .+..+.++.+++++++||+.+++..... .. ...+ .+.....+++++|+|++++.+++.+... ..|
T Consensus 170 E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~-~~~ 248 (322)
T PLN02662 170 EEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQTFPNASYRWVDVRDVANAHIQAFEIPSAS-GRY 248 (322)
T ss_pred HHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCccCCCCCcCeEEHHHHHHHHHHHhcCcCcC-CcE
Confidence 1 1223344579999999999998643211 00 0001 1223357899999999999999876554 468
Q ss_pred EEeeCCcchhhHHHHHHHHhh
Q 028525 184 EVVNGEEKVSDWKKCFSRLME 204 (208)
Q Consensus 184 ~i~~~~~~~~e~~~~~~~~~~ 204 (208)
++.+...+++|+++++.+..+
T Consensus 249 ~~~g~~~s~~e~~~~i~~~~~ 269 (322)
T PLN02662 249 CLVERVVHYSEVVKILHELYP 269 (322)
T ss_pred EEeCCCCCHHHHHHHHHHHCC
Confidence 887555699999999998765
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=133.12 Aligned_cols=175 Identities=14% Similarity=0.141 Sum_probs=126.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc-C---CCc-------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP-S---EGF------- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~---~~~------- 76 (208)
+.||.+|+++++++++|||+|++++|++++.... +++.+++.|+.|++++.+.+.|.|+||++ . ++.
T Consensus 7 gAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~--~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~~~~~k~ 84 (211)
T COG2910 7 GASGKAGSRILKEALKRGHEVTAIVRNASKLAAR--QGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASDNDELHSKS 84 (211)
T ss_pred ecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc--ccceeecccccChhhhHhhhcCCceEEEeccCCCCChhHHHHHH
Confidence 4699999999999999999999999999997653 57899999999999999999999999988 2 222
Q ss_pred ---hhhhhhhcCCCeEEEeceeee---ccC------CCCcccccchhHHHhHHHHHHHHH-hcCCCEEEEeccccccCCC
Q 028525 77 ---ISNAGSLKGVQHVILLSQLSV---YRG------SGGIQALMKGNARKLAEQDESMLM-ASGIPYTIIRTGVLQNTPG 143 (208)
Q Consensus 77 ---~~~a~~~~gv~~~v~~Ss~~~---~~~------~~~~~~~~~~~~~~~~~~~e~~l~-~~~~~~tivRp~~~~~~~~ 143 (208)
+....+.++++|++.++..+. ... +..+.+|.. .++..++.. +.|+ +..++||.+.|+.++.+..
T Consensus 85 ~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p~fP~ey~~-~A~~~ae~L-~~Lr~~~~l~WTfvSPaa~f~PGe 162 (211)
T COG2910 85 IEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTPDFPAEYKP-EALAQAEFL-DSLRAEKSLDWTFVSPAAFFEPGE 162 (211)
T ss_pred HHHHHHHHhhcCCeeEEEEcCccceEEcCCceeecCCCCchhHHH-HHHHHHHHH-HHHhhccCcceEEeCcHHhcCCcc
Confidence 345567789999988865443 221 111112211 122222222 3454 4679999999999886532
Q ss_pred Cccceeee-----cCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEe
Q 028525 144 GKQGFQFE-----EGCAANGSLSKEDAAFICVEALESIPQTGLIFEVV 186 (208)
Q Consensus 144 ~~~~~~~~-----~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~ 186 (208)
....+.++ ....+..+||.+|.|-+++..+++|...++.|.+.
T Consensus 163 rTg~yrlggD~ll~n~~G~SrIS~aDYAiA~lDe~E~~~h~rqRftv~ 210 (211)
T COG2910 163 RTGNYRLGGDQLLVNAKGESRISYADYAIAVLDELEKPQHIRQRFTVA 210 (211)
T ss_pred ccCceEeccceEEEcCCCceeeeHHHHHHHHHHHHhcccccceeeeec
Confidence 22234443 23345789999999999999999999988888764
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=146.09 Aligned_cols=182 Identities=15% Similarity=0.174 Sum_probs=132.3
Q ss_pred hccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCC--CEEEEcCCC--------
Q 028525 6 KMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGV--RSIICPSEG-------- 75 (208)
Q Consensus 6 ~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--d~vi~~~~~-------- 75 (208)
..++||+||++++++|+++||+|++++|+ .+|+.|++++.++++++ |+||++++.
T Consensus 4 v~G~tG~iG~~l~~~l~~~g~~v~~~~r~---------------~~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~ 68 (287)
T TIGR01214 4 ITGANGQLGRELVQQLSPEGRVVVALTSS---------------QLDLTDPEALERLLRAIRPDAVVNTAAYTDVDGAES 68 (287)
T ss_pred EEcCCCHHHHHHHHHHHhcCCEEEEeCCc---------------ccCCCCHHHHHHHHHhCCCCEEEECCcccccccccc
Confidence 35679999999999999999999999885 47999999999999876 999987211
Q ss_pred c--------------hhhhhhhcCCCeEEEeceeeeccCCC--------CcccccchhHHHhHHHHHHHHHhcCCCEEEE
Q 028525 76 F--------------ISNAGSLKGVQHVILLSQLSVYRGSG--------GIQALMKGNARKLAEQDESMLMASGIPYTII 133 (208)
Q Consensus 76 ~--------------~~~a~~~~gv~~~v~~Ss~~~~~~~~--------~~~~~~~~~~~~~~~~~e~~l~~~~~~~tiv 133 (208)
. +.+++++.+. +||++||.++|+... +..+...+ .. .+..+|++++..+++++++
T Consensus 69 ~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~Ss~~vy~~~~~~~~~E~~~~~~~~~Y-~~-~K~~~E~~~~~~~~~~~il 145 (287)
T TIGR01214 69 DPEKAFAVNALAPQNLARAAARHGA-RLVHISTDYVFDGEGKRPYREDDATNPLNVY-GQ-SKLAGEQAIRAAGPNALIV 145 (287)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeeeeecCCCCCCCCCCCCCCCcchh-hH-HHHHHHHHHHHhCCCeEEE
Confidence 0 1234555665 899999998875311 11111111 11 2225788888889999999
Q ss_pred eccccccCCCCcc-------------ceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHH
Q 028525 134 RTGVLQNTPGGKQ-------------GFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKCF 199 (208)
Q Consensus 134 Rp~~~~~~~~~~~-------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~ 199 (208)
||+.+++...... .+.+ .++....+++++|+|+++..+++.+...++.||++++. .+..|+++.+
T Consensus 146 R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i 224 (287)
T TIGR01214 146 RTSWLYGGGGGRNFVRTMLRLAGRGEELRV-VDDQIGSPTYAKDLARVIAALLQRLARARGVYHLANSGQCSWYEFAQAI 224 (287)
T ss_pred EeeecccCCCCCCHHHHHHHHhhcCCCceE-ecCCCcCCcCHHHHHHHHHHHHhhccCCCCeEEEECCCCcCHHHHHHHH
Confidence 9999986542111 0111 12233567899999999999998765667899999866 5999999999
Q ss_pred HHHhhhc
Q 028525 200 SRLMEKT 206 (208)
Q Consensus 200 ~~~~~~~ 206 (208)
.+.+++.
T Consensus 225 ~~~~~~~ 231 (287)
T TIGR01214 225 FEEAGAD 231 (287)
T ss_pred HHHhCcc
Confidence 9998865
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-20 Score=148.41 Aligned_cols=200 Identities=13% Similarity=0.037 Sum_probs=132.9
Q ss_pred hhccccCccHHHHHHHHHhCCCcEEEEEcCchh---hh---hh-cCCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCCC
Q 028525 5 KKMKRKKMNFRMVILSLIVKRTRIKALVKDKRN---AM---ES-FGTYVESMAGDASNKKFLKTALRG--VRSIICPSEG 75 (208)
Q Consensus 5 ~~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~---~~---~~-~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~~ 75 (208)
...++||+||+++++.|+++|++++++.++..+ .. .. ....++++.+|++|.+++.+++++ +|+|||+++.
T Consensus 5 lVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih~A~~ 84 (355)
T PRK10217 5 LITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMHLAAE 84 (355)
T ss_pred EEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEECCcc
Confidence 334689999999999999999886655443211 11 11 123578899999999999999984 8999987321
Q ss_pred --c--------------------hhhhhhh---------cCCCeEEEeceeeeccCCC----------Ccccccchh-HH
Q 028525 76 --F--------------------ISNAGSL---------KGVQHVILLSQLSVYRGSG----------GIQALMKGN-AR 113 (208)
Q Consensus 76 --~--------------------~~~a~~~---------~gv~~~v~~Ss~~~~~~~~----------~~~~~~~~~-~~ 113 (208)
. +.+++.. .++++||++||.++|+... +..+...|. +|
T Consensus 85 ~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~~~~p~s~Y~~sK 164 (355)
T PRK10217 85 SHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASK 164 (355)
T ss_pred cCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCCCCCCCChhHHHH
Confidence 0 1233433 3578999999988876211 111211111 23
Q ss_pred HhHH-HHHHHHHhcCCCEEEEeccccccCCCC--------------cccee-eecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 114 KLAE-QDESMLMASGIPYTIIRTGVLQNTPGG--------------KQGFQ-FEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 114 ~~~~-~~e~~l~~~~~~~tivRp~~~~~~~~~--------------~~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
...+ .++.+.++.+++++++||+.+++.... +..+. ++.+.+..++++++|+++++..+++.+.
T Consensus 165 ~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~ 244 (355)
T PRK10217 165 ASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHARALYCVATTGK 244 (355)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcccHHHHHHHHHhcCCCceEeCCCCeeeCcCcHHHHHHHHHHHHhcCC
Confidence 3222 123333457999999999998864321 11111 2334455778999999999999987643
Q ss_pred CCCcEEEEeeCCc-chhhHHHHHHHHhhh
Q 028525 178 QTGLIFEVVNGEE-KVSDWKKCFSRLMEK 205 (208)
Q Consensus 178 ~~~~~~~i~~~~~-~~~e~~~~~~~~~~~ 205 (208)
.++.||++++.. ++.|+++.+.+.+++
T Consensus 245 -~~~~yni~~~~~~s~~~~~~~i~~~~~~ 272 (355)
T PRK10217 245 -VGETYNIGGHNERKNLDVVETICELLEE 272 (355)
T ss_pred -CCCeEEeCCCCcccHHHHHHHHHHHhcc
Confidence 468999998775 899999999988764
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-20 Score=147.60 Aligned_cols=194 Identities=13% Similarity=0.110 Sum_probs=129.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh-----hcC--CceEEEEcCCCCHHHHHHHhcCCCEEEEcCC-C----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME-----SFG--TYVESMAGDASNKKFLKTALRGVRSIICPSE-G---- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~-----~~~--~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~-~---- 75 (208)
+++|+||++|+++|+++||+|++++|+.+.... ... .+++++.+|++|.+++.++++++|+|||+++ .
T Consensus 16 G~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~ 95 (338)
T PLN00198 16 GGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFHVATPVNFAS 95 (338)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEEeCCCCccCC
Confidence 469999999999999999999999988654211 111 2588999999999999999999999998732 1
Q ss_pred -c---------------hhhhhhhc-CCCeEEEeceeeeccCCC------------------------CcccccchhHHH
Q 028525 76 -F---------------ISNAGSLK-GVQHVILLSQLSVYRGSG------------------------GIQALMKGNARK 114 (208)
Q Consensus 76 -~---------------~~~a~~~~-gv~~~v~~Ss~~~~~~~~------------------------~~~~~~~~~~~~ 114 (208)
. +.+++.+. ++++||++||..+|+... +..+|.. +|.
T Consensus 96 ~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~~~Y~~--sK~ 173 (338)
T PLN00198 96 EDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTWGYPA--SKT 173 (338)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCccchhHH--HHH
Confidence 0 12334444 689999999988775210 1112222 233
Q ss_pred hHH-HHHHHHHhcCCCEEEEeccccccCCCCc---c------------ceee-e-cCCc----CCCcccHHHHHHHHHHH
Q 028525 115 LAE-QDESMLMASGIPYTIIRTGVLQNTPGGK---Q------------GFQF-E-EGCA----ANGSLSKEDAAFICVEA 172 (208)
Q Consensus 115 ~~~-~~e~~l~~~~~~~tivRp~~~~~~~~~~---~------------~~~~-~-~~~~----~~~~v~~~Dva~~~~~~ 172 (208)
..+ .++.+.+..+++++++||+.+++..... . .+.+ + .+.+ ...+++++|++++++.+
T Consensus 174 ~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V~D~a~a~~~~ 253 (338)
T PLN00198 174 LAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSISITHVEDVCRAHIFL 253 (338)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHHHHHHHHcCCccccccccccccccCCcceeEHHHHHHHHHHH
Confidence 222 1233344579999999999998753110 0 0001 0 0111 13689999999999999
Q ss_pred hhCCCCCCcEEEEeeCCcchhhHHHHHHHHhh
Q 028525 173 LESIPQTGLIFEVVNGEEKVSDWKKCFSRLME 204 (208)
Q Consensus 173 l~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~ 204 (208)
++.+... ..|+.++...+++|+++.+.+..+
T Consensus 254 ~~~~~~~-~~~~~~~~~~s~~el~~~i~~~~~ 284 (338)
T PLN00198 254 AEKESAS-GRYICCAANTSVPELAKFLIKRYP 284 (338)
T ss_pred hhCcCcC-CcEEEecCCCCHHHHHHHHHHHCC
Confidence 9876443 457544344589999999987764
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-20 Score=160.24 Aligned_cols=192 Identities=12% Similarity=0.088 Sum_probs=136.0
Q ss_pred cccCccHHHHHHHHHhC-CCcEEEEEcCchhhhhhcC-CceEEEEcCCCCHHH-HHHHhcCCCEEEEcCC--C---c---
Q 028525 8 KRKKMNFRMVILSLIVK-RTRIKALVKDKRNAMESFG-TYVESMAGDASNKKF-LKTALRGVRSIICPSE--G---F--- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~-g~~V~~~~R~~~~~~~~~~-~~v~~v~~Dl~d~~~-l~~~~~~~d~vi~~~~--~---~--- 76 (208)
++||+||++|+++|+++ ||+|++++|..+....... .+++++.+|++|... +.++++++|+|||+++ . .
T Consensus 322 GatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~ViHlAa~~~~~~~~~~ 401 (660)
T PRK08125 322 GVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRN 401 (660)
T ss_pred CCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHHhcCCCEEEECccccCchhhccC
Confidence 46999999999999986 7999999998765432222 368999999998655 5778899999998621 1 0
Q ss_pred --------------hhhhhhhcCCCeEEEeceeeeccCCC--C------------c----ccccchhHHHhHHHHHHHH-
Q 028525 77 --------------ISNAGSLKGVQHVILLSQLSVYRGSG--G------------I----QALMKGNARKLAEQDESML- 123 (208)
Q Consensus 77 --------------~~~a~~~~gv~~~v~~Ss~~~~~~~~--~------------~----~~~~~~~~~~~~~~~e~~l- 123 (208)
+.+++.+.+ ++|||+||..+|+... + . +.|.. .|. .+|.++
T Consensus 402 ~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Yg~--sK~---~~E~~~~ 475 (660)
T PRK08125 402 PLRVFELDFEENLKIIRYCVKYN-KRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIYSV--SKQ---LLDRVIW 475 (660)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccchHH--HHH---HHHHHHH
Confidence 234566777 8999999988886211 0 0 11221 222 345555
Q ss_pred ---HhcCCCEEEEeccccccCCCC----------------------cccee-eecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 124 ---MASGIPYTIIRTGVLQNTPGG----------------------KQGFQ-FEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 124 ---~~~~~~~tivRp~~~~~~~~~----------------------~~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
+..+++++++||+.+++.... +..+. ++.+.+...+++++|++++++.+++++.
T Consensus 476 ~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a~~~~l~~~~ 555 (660)
T PRK08125 476 AYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEALFRIIENKD 555 (660)
T ss_pred HHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHHHHHHHhccc
Confidence 346899999999998864211 01111 2233445678999999999999998753
Q ss_pred --CCCcEEEEeeCC--cchhhHHHHHHHHhhh
Q 028525 178 --QTGLIFEVVNGE--EKVSDWKKCFSRLMEK 205 (208)
Q Consensus 178 --~~~~~~~i~~~~--~~~~e~~~~~~~~~~~ 205 (208)
..++.||++++. .+++|+++.+.+..+.
T Consensus 556 ~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~ 587 (660)
T PRK08125 556 NRCDGQIINIGNPDNEASIRELAEMLLASFEK 587 (660)
T ss_pred cccCCeEEEcCCCCCceeHHHHHHHHHHHhcc
Confidence 347899999873 5999999999998874
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-21 Score=144.69 Aligned_cols=178 Identities=21% Similarity=0.233 Sum_probs=129.8
Q ss_pred hccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-cCCceEEEEcCCCCHHHHHHHhcCC--CEEEEcCCC--c----
Q 028525 6 KMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-FGTYVESMAGDASNKKFLKTALRGV--RSIICPSEG--F---- 76 (208)
Q Consensus 6 ~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~--d~vi~~~~~--~---- 76 (208)
..++||+||++++++|+++|++|+.+.|+....... ...+++++.+|+.|.+.+.+++++. |+||++++. .
T Consensus 3 I~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~ 82 (236)
T PF01370_consen 3 ITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFSSNPESF 82 (236)
T ss_dssp EETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHHHTESEEEEEBSSSSHHHHH
T ss_pred EEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEeeccccccccccccccCceEEEEeeccccccccc
Confidence 457899999999999999999999999987764221 1127999999999999999999876 999977221 0
Q ss_pred ----------------hhhhhhhcCCCeEEEeceeeeccCCCC--------cccccchh-HHHhHHHHHHHH----HhcC
Q 028525 77 ----------------ISNAGSLKGVQHVILLSQLSVYRGSGG--------IQALMKGN-ARKLAEQDESML----MASG 127 (208)
Q Consensus 77 ----------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~--------~~~~~~~~-~~~~~~~~e~~l----~~~~ 127 (208)
+.+++.+.++++||++||..+|+...+ ..+...+. .|. .+|+++ +..+
T Consensus 83 ~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~~~~~~~~~Y~~~K~---~~e~~~~~~~~~~~ 159 (236)
T PF01370_consen 83 EDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDEDSPINPLSPYGASKR---AAEELLRDYAKKYG 159 (236)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETTSGCCHSSHHHHHHH---HHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccc
Confidence 235677889999999999988874311 11222221 222 334444 3469
Q ss_pred CCEEEEeccccccCC---CC-c-------------cce-eeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEe
Q 028525 128 IPYTIIRTGVLQNTP---GG-K-------------QGF-QFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVV 186 (208)
Q Consensus 128 ~~~tivRp~~~~~~~---~~-~-------------~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~ 186 (208)
++++++||+.+++.. .. . ..+ .++.+.+...+++++|+|++++.+++++...++.|||+
T Consensus 160 ~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~yNig 236 (236)
T PF01370_consen 160 LRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALENPKAAGGIYNIG 236 (236)
T ss_dssp SEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHHSCTTTEEEEES
T ss_pred cccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence 999999999998765 11 1 111 12344555778999999999999999988788999985
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=149.26 Aligned_cols=194 Identities=12% Similarity=0.115 Sum_probs=129.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hc---C--CceEEEEcCCCCHHHHHHHhcCCCEEEEcCC-----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SF---G--TYVESMAGDASNKKFLKTALRGVRSIICPSE----- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~---~--~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~----- 74 (208)
+++|+||++|+++|+++|++|++++|+.++... .. . .+++++.+|++|.+.+.++++++|+|||+++
T Consensus 12 GatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A~~~~~~ 91 (351)
T PLN02650 12 GASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHVATPMDFE 91 (351)
T ss_pred CCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEeCCCCCCC
Confidence 579999999999999999999999998654321 11 1 2478899999999999999999999998721
Q ss_pred --Cc--------------hhhhhhhcC-CCeEEEeceeeeccCC---CCc-------------------ccccchhHHHh
Q 028525 75 --GF--------------ISNAGSLKG-VQHVILLSQLSVYRGS---GGI-------------------QALMKGNARKL 115 (208)
Q Consensus 75 --~~--------------~~~a~~~~g-v~~~v~~Ss~~~~~~~---~~~-------------------~~~~~~~~~~~ 115 (208)
.. +.+++...+ ++||||+||.+++... .+. .+|.. +|..
T Consensus 92 ~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~--sK~~ 169 (351)
T PLN02650 92 SKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGWMYFV--SKTL 169 (351)
T ss_pred CCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccchHHH--HHHH
Confidence 00 123455555 7899999998655321 000 11221 2332
Q ss_pred HHH-HHHHHHhcCCCEEEEeccccccCCCCcc---ce------eeec-----CCcCCCcccHHHHHHHHHHHhhCCCCCC
Q 028525 116 AEQ-DESMLMASGIPYTIIRTGVLQNTPGGKQ---GF------QFEE-----GCAANGSLSKEDAAFICVEALESIPQTG 180 (208)
Q Consensus 116 ~~~-~e~~l~~~~~~~tivRp~~~~~~~~~~~---~~------~~~~-----~~~~~~~v~~~Dva~~~~~~l~~~~~~~ 180 (208)
.+. +..+.+..+++++++||+.+++...... .+ ..+. ......+++++|+|++++.+++++...
T Consensus 170 ~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~V~Dva~a~~~~l~~~~~~- 248 (351)
T PLN02650 170 AEKAAWKYAAENGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNEAHYSIIKQGQFVHLDDLCNAHIFLFEHPAAE- 248 (351)
T ss_pred HHHHHHHHHHHcCCeEEEECCCceECCCCCCCCCccHHHHHHHhcCCccccCcCCCcceeeHHHHHHHHHHHhcCcCcC-
Confidence 221 2233345799999999999887432110 00 0010 011247899999999999999876543
Q ss_pred cEEEEeeCCcchhhHHHHHHHHhh
Q 028525 181 LIFEVVNGEEKVSDWKKCFSRLME 204 (208)
Q Consensus 181 ~~~~i~~~~~~~~e~~~~~~~~~~ 204 (208)
..|++++.+.+++|+++.+.+..+
T Consensus 249 ~~~i~~~~~~s~~el~~~i~~~~~ 272 (351)
T PLN02650 249 GRYICSSHDATIHDLAKMLREKYP 272 (351)
T ss_pred ceEEecCCCcCHHHHHHHHHHhCc
Confidence 367544344699999999988765
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.5e-20 Score=146.40 Aligned_cols=195 Identities=12% Similarity=0.003 Sum_probs=134.0
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchh-----hhhhc-------CCceEEEEcCCCCHHHHHHHhcC--CCEEEEc
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRN-----AMESF-------GTYVESMAGDASNKKFLKTALRG--VRSIICP 72 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-----~~~~~-------~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~ 72 (208)
-+++|+||++|+++|+++||+|++++|+.+. ..... ..+++++.+|++|.+++.+++++ +|+|||+
T Consensus 6 TGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH~ 85 (343)
T TIGR01472 6 TGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPTEIYNL 85 (343)
T ss_pred EcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCCEEEEC
Confidence 4679999999999999999999999998642 11111 23588999999999999999985 5999987
Q ss_pred CC--C---c-----------------hhhhhhhcCCC---eEEEeceeeeccCC--------CCcccccchh-HHHhHHH
Q 028525 73 SE--G---F-----------------ISNAGSLKGVQ---HVILLSQLSVYRGS--------GGIQALMKGN-ARKLAEQ 118 (208)
Q Consensus 73 ~~--~---~-----------------~~~a~~~~gv~---~~v~~Ss~~~~~~~--------~~~~~~~~~~-~~~~~~~ 118 (208)
++ + . +.+++...+++ +|||+||..+|+.. .+..+...|. .|. .
T Consensus 86 Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~---~ 162 (343)
T TIGR01472 86 AAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNETTPFYPRSPYAAAKL---Y 162 (343)
T ss_pred CcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCCCCCCCCChhHHHHH---H
Confidence 22 0 0 23455666764 89999999888621 1111222221 222 3
Q ss_pred HHHHHH----hcCCCEEEEeccccccCC-CC----------------cc--ceeeecCCcCCCcccHHHHHHHHHHHhhC
Q 028525 119 DESMLM----ASGIPYTIIRTGVLQNTP-GG----------------KQ--GFQFEEGCAANGSLSKEDAAFICVEALES 175 (208)
Q Consensus 119 ~e~~l~----~~~~~~tivRp~~~~~~~-~~----------------~~--~~~~~~~~~~~~~v~~~Dva~~~~~~l~~ 175 (208)
+|.+++ +.+++++..|+...++.. .. +. ...++.+.+...+++++|+|++++.++++
T Consensus 163 ~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~a~a~~~~~~~ 242 (343)
T TIGR01472 163 AHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVEAMWLMLQQ 242 (343)
T ss_pred HHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCccccCceeHHHHHHHHHHHHhc
Confidence 444443 458888888875544321 00 00 11123345557889999999999999876
Q ss_pred CCCCCcEEEEeeCCc-chhhHHHHHHHHhhhc
Q 028525 176 IPQTGLIFEVVNGEE-KVSDWKKCFSRLMEKT 206 (208)
Q Consensus 176 ~~~~~~~~~i~~~~~-~~~e~~~~~~~~~~~~ 206 (208)
+. +..||++++.. +++|+++.+.+.++++
T Consensus 243 ~~--~~~yni~~g~~~s~~e~~~~i~~~~g~~ 272 (343)
T TIGR01472 243 DK--PDDYVIATGETHSVREFVEVSFEYIGKT 272 (343)
T ss_pred CC--CccEEecCCCceeHHHHHHHHHHHcCCC
Confidence 53 35899998775 9999999999998853
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-20 Score=151.62 Aligned_cols=191 Identities=14% Similarity=0.042 Sum_probs=128.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh----hhhhc-CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC--C--c--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN----AMESF-GTYVESMAGDASNKKFLKTALRGVRSIICPSE--G--F-- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~----~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~--~--~-- 76 (208)
++||+||++|+++|+++||+|++++|.... ..... ..+++++.+|+.+. .+.++|+|||++. . .
T Consensus 127 GatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~-----~~~~~D~ViHlAa~~~~~~~~ 201 (436)
T PLN02166 127 GGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEP-----ILLEVDQIYHLACPASPVHYK 201 (436)
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhccCCceEEEECccccc-----cccCCCEEEECceeccchhhc
Confidence 479999999999999999999999985322 11111 23678889998764 3568999998721 1 0
Q ss_pred ----------------hhhhhhhcCCCeEEEeceeeeccCCC-------------Ccccccch-hHHHhHHH-HHHHHHh
Q 028525 77 ----------------ISNAGSLKGVQHVILLSQLSVYRGSG-------------GIQALMKG-NARKLAEQ-DESMLMA 125 (208)
Q Consensus 77 ----------------~~~a~~~~gv~~~v~~Ss~~~~~~~~-------------~~~~~~~~-~~~~~~~~-~e~~l~~ 125 (208)
+.++|++.++ +||++||..+|+... +..+...| ..|..++. +..+.+.
T Consensus 202 ~~p~~~~~~Nv~gT~nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~aE~~~~~y~~~ 280 (436)
T PLN02166 202 YNPVKTIKTNVMGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRG 280 (436)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 2356667776 899999999886321 11111111 12332221 2233345
Q ss_pred cCCCEEEEeccccccCCCC---c-------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC
Q 028525 126 SGIPYTIIRTGVLQNTPGG---K-------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNG 188 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~---~-------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~ 188 (208)
.+++++++||+.+++.... + ..+. ++.+.+...+++++|+++++..+++.+. +.+||++++
T Consensus 281 ~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~~~~~~--~giyNIgs~ 358 (436)
T PLN02166 281 AGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVALMEGEH--VGPFNLGNP 358 (436)
T ss_pred hCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhcCC--CceEEeCCC
Confidence 6899999999998874311 1 1111 2233344678999999999999987543 469999986
Q ss_pred C-cchhhHHHHHHHHhhhc
Q 028525 189 E-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 189 ~-~~~~e~~~~~~~~~~~~ 206 (208)
. .++.|+++.+.+.++.+
T Consensus 359 ~~~Si~ela~~I~~~~g~~ 377 (436)
T PLN02166 359 GEFTMLELAEVVKETIDSS 377 (436)
T ss_pred CcEeHHHHHHHHHHHhCCC
Confidence 6 49999999999998864
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-20 Score=159.42 Aligned_cols=174 Identities=12% Similarity=0.129 Sum_probs=133.7
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC-----------
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG----------- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~----------- 75 (208)
-+++|+||++++++|+++||+|++++|+..... ..+++++.+|++|.+++.++++++|+|||+++.
T Consensus 6 TGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~---~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv~G 82 (854)
T PRK05865 6 TGASGVLGRGLTARLLSQGHEVVGIARHRPDSW---PSSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINIDG 82 (854)
T ss_pred ECCCCHHHHHHHHHHHHCcCEEEEEECCchhhc---ccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHHHH
Confidence 357999999999999999999999999754321 236889999999999999999999999988321
Q ss_pred --chhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCCc---c--ce
Q 028525 76 --FISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGK---Q--GF 148 (208)
Q Consensus 76 --~~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~---~--~~ 148 (208)
.+.+++++.++++||++||.+ +..+|+++.+++++++++||+.+++..... . ..
T Consensus 83 T~nLLeAa~~~gvkr~V~iSS~~-------------------K~aaE~ll~~~gl~~vILRp~~VYGP~~~~~i~~ll~~ 143 (854)
T PRK05865 83 TANVLKAMAETGTGRIVFTSSGH-------------------QPRVEQMLADCGLEWVAVRCALIFGRNVDNWVQRLFAL 143 (854)
T ss_pred HHHHHHHHHHcCCCeEEEECCcH-------------------HHHHHHHHHHcCCCEEEEEeceEeCCChHHHHHHHhcC
Confidence 134567788999999999854 124678888889999999999998643111 0 00
Q ss_pred -eeecC--CcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHHHHH
Q 028525 149 -QFEEG--CAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKCFSRL 202 (208)
Q Consensus 149 -~~~~~--~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~~~ 202 (208)
.+..+ .....+++++|+|+++..+++++...+..||++++. .+.+|+++.+.+.
T Consensus 144 ~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~~~~ggvyNIgsg~~~Si~EIae~l~~~ 201 (854)
T PRK05865 144 PVLPAGYADRVVQVVHSDDAQRLLVRALLDTVIDSGPVNLAAPGELTFRRIAAALGRP 201 (854)
T ss_pred ceeccCCCCceEeeeeHHHHHHHHHHHHhCCCcCCCeEEEECCCcccHHHHHHHHhhh
Confidence 11112 223468999999999999987665557899999876 4999999988764
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=143.83 Aligned_cols=191 Identities=13% Similarity=0.152 Sum_probs=130.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---h---c--CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---S---F--GTYVESMAGDASNKKFLKTALRGVRSIICPSEG---- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~---~--~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~---- 75 (208)
+++|+||++++++|+++||+|++++|+..+... . . ..+++++.+|++|.+++.++++++|+||++++.
T Consensus 12 G~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A~~~~~~ 91 (325)
T PLN02989 12 GASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFHTASPVAIT 91 (325)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEEeCCCCCCC
Confidence 569999999999999999999999988654211 1 1 135889999999999999999999999987321
Q ss_pred ----c--------------hhhhhhh-cCCCeEEEeceeeeccCCC-------------Cc---------ccccchhHHH
Q 028525 76 ----F--------------ISNAGSL-KGVQHVILLSQLSVYRGSG-------------GI---------QALMKGNARK 114 (208)
Q Consensus 76 ----~--------------~~~a~~~-~gv~~~v~~Ss~~~~~~~~-------------~~---------~~~~~~~~~~ 114 (208)
. +.+++.. .++++||++||..++.... +. .+|.. .|.
T Consensus 92 ~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y~~--sK~ 169 (325)
T PLN02989 92 VKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQWYVL--SKT 169 (325)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhcccccchHH--HHH
Confidence 0 1233444 3578999999986653210 01 11211 233
Q ss_pred hHHHHHHHH----HhcCCCEEEEeccccccCCCCcc-cee-------e-ecC---CcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 115 LAEQDESML----MASGIPYTIIRTGVLQNTPGGKQ-GFQ-------F-EEG---CAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 115 ~~~~~e~~l----~~~~~~~tivRp~~~~~~~~~~~-~~~-------~-~~~---~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
.+|.++ +..+++++++||+.+++...... .+. + +.. .....+++++|+|++++.+++.+..
T Consensus 170 ---~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~~~~~~r~~i~v~Dva~a~~~~l~~~~~ 246 (325)
T PLN02989 170 ---LAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPFNTTHHRFVDVRDVALAHVKALETPSA 246 (325)
T ss_pred ---HHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCCCCCcCcCeeEHHHHHHHHHHHhcCccc
Confidence 334443 45699999999999987432110 010 0 111 1124678999999999999987654
Q ss_pred CCcEEEEeeCCcchhhHHHHHHHHhh
Q 028525 179 TGLIFEVVNGEEKVSDWKKCFSRLME 204 (208)
Q Consensus 179 ~~~~~~i~~~~~~~~e~~~~~~~~~~ 204 (208)
+..||++++..+++|+++.+.+..+
T Consensus 247 -~~~~ni~~~~~s~~ei~~~i~~~~~ 271 (325)
T PLN02989 247 -NGRYIIDGPVVTIKDIENVLREFFP 271 (325)
T ss_pred -CceEEEecCCCCHHHHHHHHHHHCC
Confidence 4589996555699999999999876
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-19 Score=141.19 Aligned_cols=193 Identities=15% Similarity=0.139 Sum_probs=129.1
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchh--h----hhhc--CCceEEEEcCCCCHHHHHHHhcCCCEEEEc-C-CC-
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRN--A----MESF--GTYVESMAGDASNKKFLKTALRGVRSIICP-S-EG- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~--~----~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~-~~- 75 (208)
-++||+||++++++|+++||+|++++|+.++ . .... ..+++++.+|++|.+++.+++.++|+|+++ . ..
T Consensus 12 TGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~~~~~~~~~ 91 (297)
T PLN02583 12 MDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLFCCFDPPSD 91 (297)
T ss_pred ECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEEEeCccCCc
Confidence 3679999999999999999999999996432 1 1111 236889999999999999999999999965 1 11
Q ss_pred c-----------------hhhhhhhc-CCCeEEEeceeeec--cCCC-----Cc----c---ccc-----ch-hHHHhHH
Q 028525 76 F-----------------ISNAGSLK-GVQHVILLSQLSVY--RGSG-----GI----Q---ALM-----KG-NARKLAE 117 (208)
Q Consensus 76 ~-----------------~~~a~~~~-gv~~~v~~Ss~~~~--~~~~-----~~----~---~~~-----~~-~~~~~~~ 117 (208)
. +.+++.+. +++|||++||.+++ .+.. +. + .+. .+ .+|.
T Consensus 92 ~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~--- 168 (297)
T PLN02583 92 YPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLWHALAKT--- 168 (297)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhcccHHHHHHH---
Confidence 0 23344444 68999999998653 2110 00 0 000 01 1222
Q ss_pred HHHHHH----HhcCCCEEEEeccccccCCCCc-cceeee----cCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC
Q 028525 118 QDESML----MASGIPYTIIRTGVLQNTPGGK-QGFQFE----EGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNG 188 (208)
Q Consensus 118 ~~e~~l----~~~~~~~tivRp~~~~~~~~~~-~~~~~~----~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~ 188 (208)
.+|+++ +..++++++|||+.+++..... .....+ .+.....+++++|+|++++.+++.+...+ .|.++++
T Consensus 169 ~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~v~V~Dva~a~~~al~~~~~~~-r~~~~~~ 247 (297)
T PLN02583 169 LSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHNPYLKGAAQMYENGVLVTVDVNFLVDAHIRAFEDVSSYG-RYLCFNH 247 (297)
T ss_pred HHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCchhhhcCCcccCcccCcceEEHHHHHHHHHHHhcCcccCC-cEEEecC
Confidence 344444 3569999999999998643221 111111 11223568999999999999999777655 6888876
Q ss_pred Ccc-hhhHHHHHHHHh
Q 028525 189 EEK-VSDWKKCFSRLM 203 (208)
Q Consensus 189 ~~~-~~e~~~~~~~~~ 203 (208)
..+ ..++.+++.+..
T Consensus 248 ~~~~~~~~~~~~~~~~ 263 (297)
T PLN02583 248 IVNTEEDAVKLAQMLS 263 (297)
T ss_pred CCccHHHHHHHHHHhC
Confidence 664 467888888754
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=157.11 Aligned_cols=195 Identities=12% Similarity=0.155 Sum_probs=137.2
Q ss_pred hccccCccHHHHHHHHH--hCCCcEEEEEcCchh--hhhh---cC-CceEEEEcCCCCH------HHHHHHhcCCCEEEE
Q 028525 6 KMKRKKMNFRMVILSLI--VKRTRIKALVKDKRN--AMES---FG-TYVESMAGDASNK------KFLKTALRGVRSIIC 71 (208)
Q Consensus 6 ~~~~~G~iG~~l~~~Ll--~~g~~V~~~~R~~~~--~~~~---~~-~~v~~v~~Dl~d~------~~l~~~~~~~d~vi~ 71 (208)
.-++||+||++|+++|+ ++|++|++++|+.+. .... .. .+++++.+|++|+ +.+.++ +++|+|||
T Consensus 5 VTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~~~D~Vih 83 (657)
T PRK07201 5 VTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL-GDIDHVVH 83 (657)
T ss_pred EeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh-cCCCEEEE
Confidence 34689999999999999 579999999997543 1111 11 4689999999984 455555 89999998
Q ss_pred cCCC-------------------chhhhhhhcCCCeEEEeceeeeccCCCC-------------cccccchhHHHhHHHH
Q 028525 72 PSEG-------------------FISNAGSLKGVQHVILLSQLSVYRGSGG-------------IQALMKGNARKLAEQD 119 (208)
Q Consensus 72 ~~~~-------------------~~~~a~~~~gv~~~v~~Ss~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 119 (208)
+++. .+.+++++.++++|||+||..+++.... ..+|.. . +..+
T Consensus 84 ~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~~~~e~~~~~~~~~~~~Y~~--s---K~~~ 158 (657)
T PRK07201 84 LAAIYDLTADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEGVFREDDFDEGQGLPTPYHR--T---KFEA 158 (657)
T ss_pred CceeecCCCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccCccccccchhhcCCCCchHH--H---HHHH
Confidence 7320 0235677788999999999988752110 111221 2 2246
Q ss_pred HHHHH-hcCCCEEEEeccccccCCCCccc----------------------ee-eecCCcCCCcccHHHHHHHHHHHhhC
Q 028525 120 ESMLM-ASGIPYTIIRTGVLQNTPGGKQG----------------------FQ-FEEGCAANGSLSKEDAAFICVEALES 175 (208)
Q Consensus 120 e~~l~-~~~~~~tivRp~~~~~~~~~~~~----------------------~~-~~~~~~~~~~v~~~Dva~~~~~~l~~ 175 (208)
|++++ ..+++++++||+.+++....+.. .. +..+.....+++++|+++++..+++.
T Consensus 159 E~~~~~~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vddva~ai~~~~~~ 238 (657)
T PRK07201 159 EKLVREECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYVADALDHLMHK 238 (657)
T ss_pred HHHHHHcCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeeeeeHHHHHHHHHHHhcC
Confidence 78777 46899999999999874321100 00 00111224578899999999999887
Q ss_pred CCCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 176 IPQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 176 ~~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
+...++.||++++. .+..|+++.+.+.+|.+
T Consensus 239 ~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~ 270 (657)
T PRK07201 239 DGRDGQTFHLTDPKPQRVGDIYNAFARAAGAP 270 (657)
T ss_pred cCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCC
Confidence 66778999999865 49999999999998764
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-19 Score=155.60 Aligned_cols=195 Identities=17% Similarity=0.192 Sum_probs=135.6
Q ss_pred cccCccHHHHHHHHHhC--CCcEEEEEcCc--hhhhhh----cCCceEEEEcCCCCHHHHHHHh--cCCCEEEEcCCC--
Q 028525 8 KRKKMNFRMVILSLIVK--RTRIKALVKDK--RNAMES----FGTYVESMAGDASNKKFLKTAL--RGVRSIICPSEG-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~--g~~V~~~~R~~--~~~~~~----~~~~v~~v~~Dl~d~~~l~~~~--~~~d~vi~~~~~-- 75 (208)
++||+||++|+++|+++ +|+|++++|.. +..... ...+++++.+|++|.+.+..++ .++|+|||+++.
T Consensus 13 GatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~ViHlAa~~~ 92 (668)
T PLN02260 13 GAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTIMHFAAQTH 92 (668)
T ss_pred CCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEEEECCCccC
Confidence 57999999999999998 68999998753 121111 1246899999999998888776 579999987221
Q ss_pred --------------------chhhhhhhcC-CCeEEEeceeeeccCCCC-----------cccccchh-HHHhHHHHHHH
Q 028525 76 --------------------FISNAGSLKG-VQHVILLSQLSVYRGSGG-----------IQALMKGN-ARKLAEQDESM 122 (208)
Q Consensus 76 --------------------~~~~a~~~~g-v~~~v~~Ss~~~~~~~~~-----------~~~~~~~~-~~~~~~~~e~~ 122 (208)
.+.+++++.+ ++||||+||..+|+.... ..+...+. .|. .+|.+
T Consensus 93 ~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~sK~---~aE~~ 169 (668)
T PLN02260 93 VDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSATKA---GAEML 169 (668)
T ss_pred chhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCCCCCCCcHHHHH---HHHHH
Confidence 0234566666 899999999988863211 11111111 232 34555
Q ss_pred HH----hcCCCEEEEeccccccCCCCc--------------cceee-ecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEE
Q 028525 123 LM----ASGIPYTIIRTGVLQNTPGGK--------------QGFQF-EEGCAANGSLSKEDAAFICVEALESIPQTGLIF 183 (208)
Q Consensus 123 l~----~~~~~~tivRp~~~~~~~~~~--------------~~~~~-~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~ 183 (208)
++ ..+++++++||+.+++..... ..+.+ +.+.+...++|++|+|+++..+++.+ ..+++|
T Consensus 170 v~~~~~~~~l~~vilR~~~VyGp~~~~~~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~~l~~~-~~~~vy 248 (668)
T PLN02260 170 VMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKG-EVGHVY 248 (668)
T ss_pred HHHHHHHcCCCEEEECcccccCcCCCcccHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHHHHhcC-CCCCEE
Confidence 54 468999999999998743211 11111 22334467899999999999988754 346899
Q ss_pred EEeeCC-cchhhHHHHHHHHhhhc
Q 028525 184 EVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 184 ~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
|++++. .++.|+++.+.+..|.+
T Consensus 249 ni~~~~~~s~~el~~~i~~~~g~~ 272 (668)
T PLN02260 249 NIGTKKERRVIDVAKDICKLFGLD 272 (668)
T ss_pred EECCCCeeEHHHHHHHHHHHhCCC
Confidence 999766 48999999999988754
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=143.37 Aligned_cols=191 Identities=13% Similarity=0.091 Sum_probs=130.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---h--cCCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCCC--c--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---S--FGTYVESMAGDASNKKFLKTALRG--VRSIICPSEG--F-- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~--~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~~--~-- 76 (208)
+++|+||+++++.|+++||+|++++|+...... . ...++.++.+|++|.+++.+++++ +|+||++++. .
T Consensus 11 GatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~A~~~~~~~ 90 (349)
T TIGR02622 11 GHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHLAAQPLVRK 90 (349)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEECCccccccc
Confidence 579999999999999999999999987654211 1 123577899999999999999985 5999987321 0
Q ss_pred ------------------hhhhhhhcC-CCeEEEeceeeeccCC------------CCcccccchhHHHhHHHHHHHHHh
Q 028525 77 ------------------ISNAGSLKG-VQHVILLSQLSVYRGS------------GGIQALMKGNARKLAEQDESMLMA 125 (208)
Q Consensus 77 ------------------~~~a~~~~g-v~~~v~~Ss~~~~~~~------------~~~~~~~~~~~~~~~~~~e~~l~~ 125 (208)
+.+++...+ +++||++||..+|+.. .+.++|.. .|.. +|.+++.
T Consensus 91 ~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~~~Y~~--sK~~---~e~~~~~ 165 (349)
T TIGR02622 91 SYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDPYSS--SKAC---AELVIAS 165 (349)
T ss_pred chhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCCCcchh--HHHH---HHHHHHH
Confidence 234455555 7899999998777521 11223332 2322 3333321
Q ss_pred -----------cCCCEEEEeccccccCCC---------------CccceeeecCCcCCCcccHHHHHHHHHHHhhCC---
Q 028525 126 -----------SGIPYTIIRTGVLQNTPG---------------GKQGFQFEEGCAANGSLSKEDAAFICVEALESI--- 176 (208)
Q Consensus 126 -----------~~~~~tivRp~~~~~~~~---------------~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~--- 176 (208)
.+++++++||+.+++... .+....++.+.+...++|++|++++++.+++..
T Consensus 166 ~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~rd~i~v~D~a~a~~~~~~~~~~~ 245 (349)
T TIGR02622 166 YRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIVIIRNPDATRPWQHVLEPLSGYLLLAEKLFTG 245 (349)
T ss_pred HHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCeEECCCCcccceeeHHHHHHHHHHHHHHHhhc
Confidence 289999999999986421 111223333445577899999999999887642
Q ss_pred -CCCCcEEEEeeC---CcchhhHHHHHHHHh
Q 028525 177 -PQTGLIFEVVNG---EEKVSDWKKCFSRLM 203 (208)
Q Consensus 177 -~~~~~~~~i~~~---~~~~~e~~~~~~~~~ 203 (208)
...++.||++++ +.++.|+++.+.+..
T Consensus 246 ~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~ 276 (349)
T TIGR02622 246 QAEFAGAWNFGPRASDNARVVELVVDALEFW 276 (349)
T ss_pred CccccceeeeCCCcccCcCHHHHHHHHHHHh
Confidence 123579999975 348889888776654
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=145.48 Aligned_cols=194 Identities=12% Similarity=0.095 Sum_probs=131.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh--c---------CCceEEEEcCCCCHHHHHHHhcCCCEEEEcC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES--F---------GTYVESMAGDASNKKFLKTALRGVRSIICPS--- 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~--~---------~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~--- 73 (208)
+++|+||++|+++|+++||+|++++|+.++.... . ..++.++.+|++|.+++.++++++|+||++.
T Consensus 60 GatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~~d~V~hlA~~~ 139 (367)
T PLN02686 60 GGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDGCAGVFHTSAFV 139 (367)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHhccEEEecCeee
Confidence 4699999999999999999999999986543211 0 1257889999999999999999999999761
Q ss_pred -C-C---c--------------hhhhhhhc-CCCeEEEeceee--eccC--C-C-C--c------------ccccchh-H
Q 028525 74 -E-G---F--------------ISNAGSLK-GVQHVILLSQLS--VYRG--S-G-G--I------------QALMKGN-A 112 (208)
Q Consensus 74 -~-~---~--------------~~~a~~~~-gv~~~v~~Ss~~--~~~~--~-~-~--~------------~~~~~~~-~ 112 (208)
+ + . +.+++.+. +++||||+||.. +|+. . . + . .+...|. .
T Consensus 140 ~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~~~~~p~~~Y~~s 219 (367)
T PLN02686 140 DPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDESFCRDNKLWYALG 219 (367)
T ss_pred cccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCChhhcccccchHHHH
Confidence 1 1 0 23455554 799999999963 3421 0 0 0 0 0111111 2
Q ss_pred HHhHHHHHHHH----HhcCCCEEEEeccccccCCCCc--c---------ceeeecCCcCCCcccHHHHHHHHHHHhhCC-
Q 028525 113 RKLAEQDESML----MASGIPYTIIRTGVLQNTPGGK--Q---------GFQFEEGCAANGSLSKEDAAFICVEALESI- 176 (208)
Q Consensus 113 ~~~~~~~e~~l----~~~~~~~tivRp~~~~~~~~~~--~---------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~- 176 (208)
|. .+|.++ +..+++++++||+.+++..... . ...+ .++....+++++|++++++.+++.+
T Consensus 220 K~---~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~~~~~~~~~g~~~~-~g~g~~~~v~V~Dva~A~~~al~~~~ 295 (367)
T PLN02686 220 KL---KAEKAAWRAARGKGLKLATICPALVTGPGFFRRNSTATIAYLKGAQEM-LADGLLATADVERLAEAHVCVYEAMG 295 (367)
T ss_pred HH---HHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCChhHHHHhcCCCcc-CCCCCcCeEEHHHHHHHHHHHHhccC
Confidence 22 234444 3469999999999998753211 0 0001 1122245899999999999999753
Q ss_pred -CCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 177 -PQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 177 -~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
...+..| ++++. .+++|+++.+.+.++.+
T Consensus 296 ~~~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~ 326 (367)
T PLN02686 296 NKTAFGRY-ICFDHVVSREDEAEELARQIGLP 326 (367)
T ss_pred CCCCCCcE-EEeCCCccHHHHHHHHHHHcCCC
Confidence 2345678 66655 59999999999999754
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-19 Score=139.91 Aligned_cols=198 Identities=12% Similarity=0.060 Sum_probs=133.0
Q ss_pred ccccCccHHHHHHHHHhCC--CcEEEEEcCch--h---hhhhc-CCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCCCc
Q 028525 7 MKRKKMNFRMVILSLIVKR--TRIKALVKDKR--N---AMESF-GTYVESMAGDASNKKFLKTALRG--VRSIICPSEGF 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~--~---~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~~~ 76 (208)
-++||+||++++++|+++| ++|++++|... + ..... ..+++++.+|++|++++.+++++ +|+||++++..
T Consensus 5 tGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 5 TGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHFAAES 84 (317)
T ss_pred EcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEccccc
Confidence 3679999999999999987 78998876421 1 11111 23688999999999999999987 89999873210
Q ss_pred ----------------------hhhhhhhcCCC-eEEEeceeeeccCCC---------Ccccccchh-HHHhHH-HHHHH
Q 028525 77 ----------------------ISNAGSLKGVQ-HVILLSQLSVYRGSG---------GIQALMKGN-ARKLAE-QDESM 122 (208)
Q Consensus 77 ----------------------~~~a~~~~gv~-~~v~~Ss~~~~~~~~---------~~~~~~~~~-~~~~~~-~~e~~ 122 (208)
+.+++.+.+.+ ++|++||..+|+... +..+...+. .|...+ .++.+
T Consensus 85 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~ 164 (317)
T TIGR01181 85 HVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPLAPSSPYSASKAASDHLVRAY 164 (317)
T ss_pred CchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHH
Confidence 12345555444 899999988775221 111211111 222222 12233
Q ss_pred HHhcCCCEEEEeccccccCCCCc--------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEee
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGK--------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVN 187 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~--------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~ 187 (208)
.++.+++++++||+.+++..... ..+. ++.+.....+++.+|+|+++..+++++ ..+++||+++
T Consensus 165 ~~~~~~~~~i~R~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~~~-~~~~~~~~~~ 243 (317)
T TIGR01181 165 HRTYGLPALITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEKG-RVGETYNIGG 243 (317)
T ss_pred HHHhCCCeEEEEeccccCCCCCcccHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHcCC-CCCceEEeCC
Confidence 34579999999999988643211 1111 222333457899999999999998754 4568999998
Q ss_pred CC-cchhhHHHHHHHHhhh
Q 028525 188 GE-EKVSDWKKCFSRLMEK 205 (208)
Q Consensus 188 ~~-~~~~e~~~~~~~~~~~ 205 (208)
+. .+..|+++.+.+..+.
T Consensus 244 ~~~~s~~~~~~~i~~~~~~ 262 (317)
T TIGR01181 244 GNERTNLEVVETILELLGK 262 (317)
T ss_pred CCceeHHHHHHHHHHHhCC
Confidence 76 5999999999999875
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-19 Score=141.07 Aligned_cols=197 Identities=17% Similarity=0.131 Sum_probs=132.2
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhh-------hhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCC--C
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNA-------MESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSE--G 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-------~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~--~ 75 (208)
.++||+||++|+++|+++||+|++++|..... ......++.++.+|++|++++.++++ ++|+||++++ .
T Consensus 6 tGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~a~~~~ 85 (338)
T PRK10675 6 TGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHFAGLKA 85 (338)
T ss_pred ECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEECCcccc
Confidence 46799999999999999999999998653221 11112357788999999999999886 5899998721 0
Q ss_pred --------------------chhhhhhhcCCCeEEEeceeeeccCCC--------Cc-ccccchh-HHHhHHHHHHHHH-
Q 028525 76 --------------------FISNAGSLKGVQHVILLSQLSVYRGSG--------GI-QALMKGN-ARKLAEQDESMLM- 124 (208)
Q Consensus 76 --------------------~~~~a~~~~gv~~~v~~Ss~~~~~~~~--------~~-~~~~~~~-~~~~~~~~e~~l~- 124 (208)
.+.+++++.++++||++||.++|+... +. .+...+. .|. .+|++++
T Consensus 86 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~~Y~~sK~---~~E~~~~~ 162 (338)
T PRK10675 86 VGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKL---MVEQILTD 162 (338)
T ss_pred ccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCccccccCCCCCCChhHHHHH---HHHHHHHH
Confidence 023456778999999999988875211 11 1121111 222 3455554
Q ss_pred ---h-cCCCEEEEeccccccCC--------CC---cc--------------cee-ee------cCCcCCCcccHHHHHHH
Q 028525 125 ---A-SGIPYTIIRTGVLQNTP--------GG---KQ--------------GFQ-FE------EGCAANGSLSKEDAAFI 168 (208)
Q Consensus 125 ---~-~~~~~tivRp~~~~~~~--------~~---~~--------------~~~-~~------~~~~~~~~v~~~Dva~~ 168 (208)
. .+++++++|++.+++.. .. .. .+. ++ .+.+...+++++|+|++
T Consensus 163 ~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~~ 242 (338)
T PRK10675 163 LQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADG 242 (338)
T ss_pred HHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEEHHHHHHH
Confidence 2 37899999976655421 00 00 010 11 11222567999999999
Q ss_pred HHHHhhCC--CCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 169 CVEALESI--PQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 169 ~~~~l~~~--~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
++.+++.. ...+++||++++. .+++|+++++.+..+++
T Consensus 243 ~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~ 283 (338)
T PRK10675 243 HVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKP 283 (338)
T ss_pred HHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCCC
Confidence 99998752 2346899999776 49999999999998864
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-19 Score=139.56 Aligned_cols=195 Identities=18% Similarity=0.229 Sum_probs=138.7
Q ss_pred hccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCC-CEEEEcCC------C---
Q 028525 6 KMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGV-RSIICPSE------G--- 75 (208)
Q Consensus 6 ~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-d~vi~~~~------~--- 75 (208)
..++||+||++|+++|+++||+|++++|...+..... .+++++.+|++|.+.+.+++.++ |+|||++. .
T Consensus 5 VtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~~~~~~~~~ 83 (314)
T COG0451 5 VTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL-SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQSSVPDSNAS 83 (314)
T ss_pred EEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc-cccceeeecccchHHHHHHHhcCCCEEEEccccCchhhhhhh
Confidence 4467999999999999999999999999877654333 57899999999998888888888 99998711 1
Q ss_pred ----c----------hhhhhhhcCCCeEEEeceeeeccCC----------CCcccccchh-HHHhHHHHHHHHHh----c
Q 028525 76 ----F----------ISNAGSLKGVQHVILLSQLSVYRGS----------GGIQALMKGN-ARKLAEQDESMLMA----S 126 (208)
Q Consensus 76 ----~----------~~~a~~~~gv~~~v~~Ss~~~~~~~----------~~~~~~~~~~-~~~~~~~~e~~l~~----~ 126 (208)
. +.+++++.++++|||+||.+++... .+..+...+. .|. ++|+++.. .
T Consensus 84 ~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~~~~~p~~~Yg~sK~---~~E~~~~~~~~~~ 160 (314)
T COG0451 84 DPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKL---AAEQLLRAYARLY 160 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCcccccCCCCCCCHHHHHHH---HHHHHHHHHHHHh
Confidence 0 1345666799999998887765422 1122222111 222 35666553 4
Q ss_pred CCCEEEEeccccccCCCCcc---cee------e--ecC--------CcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEee
Q 028525 127 GIPYTIIRTGVLQNTPGGKQ---GFQ------F--EEG--------CAANGSLSKEDAAFICVEALESIPQTGLIFEVVN 187 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~~~~~---~~~------~--~~~--------~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~ 187 (208)
+++++++||+.+++...... .+. . +.+ .....+++++|++++++.+++++... .||+++
T Consensus 161 ~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~--~~ni~~ 238 (314)
T COG0451 161 GLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPDGG--VFNIGS 238 (314)
T ss_pred CCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHHhCCCCc--EEEeCC
Confidence 79999999998886432211 000 0 111 11134788999999999999987765 999998
Q ss_pred CC--cchhhHHHHHHHHhhhc
Q 028525 188 GE--EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 188 ~~--~~~~e~~~~~~~~~~~~ 206 (208)
+. .+.+|+++.+.+.++..
T Consensus 239 ~~~~~~~~e~~~~~~~~~~~~ 259 (314)
T COG0451 239 GTAEITVRELAEAVAEAVGSK 259 (314)
T ss_pred CCCcEEHHHHHHHHHHHhCCC
Confidence 74 48999999999988865
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=140.98 Aligned_cols=194 Identities=11% Similarity=0.102 Sum_probs=130.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---c--CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC----Cc--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---F--GTYVESMAGDASNKKFLKTALRGVRSIICPSE----GF-- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~--~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~----~~-- 76 (208)
+++|+||++++++|+++|++|++++|+.++.... + ..+++++.+|++|.+++.++++++|+|||+++ ..
T Consensus 17 G~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~~~~~~~~~ 96 (353)
T PLN02896 17 GATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVAASMEFDVSS 96 (353)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECCccccCCccc
Confidence 5699999999999999999999999987653211 1 24688999999999999999999999998721 10
Q ss_pred -----------------------hhhhhhhc-CCCeEEEeceeeeccCCC-------Cc-----c-------------cc
Q 028525 77 -----------------------ISNAGSLK-GVQHVILLSQLSVYRGSG-------GI-----Q-------------AL 107 (208)
Q Consensus 77 -----------------------~~~a~~~~-gv~~~v~~Ss~~~~~~~~-------~~-----~-------------~~ 107 (208)
+.+++.+. ++++||++||..+|+... +. . +|
T Consensus 97 ~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~~~~~~~~~~~Y 176 (353)
T PLN02896 97 DHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHVWNTKASGWVY 176 (353)
T ss_pred cccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHHHhhccCCCCccH
Confidence 11334444 488999999988875210 00 0 12
Q ss_pred cchhHHHhHH-HHHHHHHhcCCCEEEEeccccccCCCCcc-c--e---e---eecC--------Cc----CCCcccHHHH
Q 028525 108 MKGNARKLAE-QDESMLMASGIPYTIIRTGVLQNTPGGKQ-G--F---Q---FEEG--------CA----ANGSLSKEDA 165 (208)
Q Consensus 108 ~~~~~~~~~~-~~e~~l~~~~~~~tivRp~~~~~~~~~~~-~--~---~---~~~~--------~~----~~~~v~~~Dv 165 (208)
.. .|...+ .+..+.+..+++++++||+.+++...... . + . .+.. .. ...+++++|+
T Consensus 177 ~~--sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dfi~v~Dv 254 (353)
T PLN02896 177 VL--SKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSAVNSRMGSIALVHIEDI 254 (353)
T ss_pred HH--HHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHHHhcCCccccccccccccccCceeEEeHHHH
Confidence 11 233222 12334445799999999999887432110 0 0 0 0100 00 1257899999
Q ss_pred HHHHHHHhhCCCCCCcEEEEeeCCcchhhHHHHHHHHhh
Q 028525 166 AFICVEALESIPQTGLIFEVVNGEEKVSDWKKCFSRLME 204 (208)
Q Consensus 166 a~~~~~~l~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~ 204 (208)
|++++.+++.+... ..|++++.+.+++|+++.+.+..+
T Consensus 255 a~a~~~~l~~~~~~-~~~~~~~~~~s~~el~~~i~~~~~ 292 (353)
T PLN02896 255 CDAHIFLMEQTKAE-GRYICCVDSYDMSELINHLSKEYP 292 (353)
T ss_pred HHHHHHHHhCCCcC-ccEEecCCCCCHHHHHHHHHHhCC
Confidence 99999999865443 467655444699999999998875
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-19 Score=145.67 Aligned_cols=188 Identities=11% Similarity=0.043 Sum_probs=127.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh----hh-hcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC--C--c--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA----ME-SFGTYVESMAGDASNKKFLKTALRGVRSIICPSE--G--F-- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~----~~-~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~--~--~-- 76 (208)
++||+||++|+++|+++||+|++++|..... .. ....+++++.+|+.+. ++.++|+|||++. . .
T Consensus 126 GatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~-----~l~~~D~ViHlAa~~~~~~~~ 200 (442)
T PLN02206 126 GGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEP-----ILLEVDQIYHLACPASPVHYK 200 (442)
T ss_pred CcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccCh-----hhcCCCEEEEeeeecchhhhh
Confidence 4699999999999999999999998753321 11 1124688999998775 3467999998721 0 0
Q ss_pred ----------------hhhhhhhcCCCeEEEeceeeeccCCCC----------cccc---cch-hHHHhHHHHHHHH---
Q 028525 77 ----------------ISNAGSLKGVQHVILLSQLSVYRGSGG----------IQAL---MKG-NARKLAEQDESML--- 123 (208)
Q Consensus 77 ----------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~----------~~~~---~~~-~~~~~~~~~e~~l--- 123 (208)
+.++|++.++ +||++||..+|+.... ..+. ..+ ..|. .+|+++
T Consensus 201 ~~p~~~~~~Nv~gt~nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~SK~---~aE~~~~~y 276 (442)
T PLN02206 201 FNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKR---TAETLTMDY 276 (442)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECChHHhCCCCCCCCCccccccCCCCCccchHHHHHH---HHHHHHHHH
Confidence 2456777786 8999999988863210 0111 111 1233 344444
Q ss_pred -HhcCCCEEEEeccccccCCC---Cc-------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEE
Q 028525 124 -MASGIPYTIIRTGVLQNTPG---GK-------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEV 185 (208)
Q Consensus 124 -~~~~~~~tivRp~~~~~~~~---~~-------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i 185 (208)
+..+++++++||+.+++... .+ ..+. ++.+.+...+++++|+|++++.+++.+ .+..||+
T Consensus 277 ~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~a~e~~--~~g~yNI 354 (442)
T PLN02206 277 HRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGE--HVGPFNL 354 (442)
T ss_pred HHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHHHHhcC--CCceEEE
Confidence 45789999999999886421 11 1111 222333456899999999999998754 3458999
Q ss_pred eeCC-cchhhHHHHHHHHhhhc
Q 028525 186 VNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 186 ~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
+++. .+++|+++.+.+.++.+
T Consensus 355 gs~~~~sl~Elae~i~~~~g~~ 376 (442)
T PLN02206 355 GNPGEFTMLELAKVVQETIDPN 376 (442)
T ss_pred cCCCceeHHHHHHHHHHHhCCC
Confidence 9866 59999999999988753
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=137.86 Aligned_cols=185 Identities=11% Similarity=0.049 Sum_probs=128.0
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCC---C---c--
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSE---G---F-- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~---~---~-- 76 (208)
.++||+||++|++.|+++||+|+++.+. ..+|++|.+++.++++ ++|+|||+++ . .
T Consensus 3 tGa~GfiG~~l~~~L~~~g~~v~~~~~~--------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~~~ 68 (306)
T PLN02725 3 AGHRGLVGSAIVRKLEALGFTNLVLRTH--------------KELDLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMT 68 (306)
T ss_pred ccCCCcccHHHHHHHHhCCCcEEEeecc--------------ccCCCCCHHHHHHHHhccCCCEEEEeeeeecccchhhh
Confidence 4689999999999999999998876432 1489999999999887 4699997721 1 0
Q ss_pred ---------------hhhhhhhcCCCeEEEeceeeeccCCC------------Ccccccc-h-hHHHhHHH-HHHHHHhc
Q 028525 77 ---------------ISNAGSLKGVQHVILLSQLSVYRGSG------------GIQALMK-G-NARKLAEQ-DESMLMAS 126 (208)
Q Consensus 77 ---------------~~~a~~~~gv~~~v~~Ss~~~~~~~~------------~~~~~~~-~-~~~~~~~~-~e~~l~~~ 126 (208)
+.+++++.++++||++||..+|+... +..+... + ..|...+. ++.+.+..
T Consensus 69 ~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~~ 148 (306)
T PLN02725 69 YPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQAYRIQY 148 (306)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 23567778899999999998886321 1111111 1 12333321 33344567
Q ss_pred CCCEEEEeccccccCCCC-----c-----------------ccee--eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcE
Q 028525 127 GIPYTIIRTGVLQNTPGG-----K-----------------QGFQ--FEEGCAANGSLSKEDAAFICVEALESIPQTGLI 182 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~~~-----~-----------------~~~~--~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~ 182 (208)
+++++++||+.+++.... . .... ++.+.+...+++++|++++++.+++.+. ..+.
T Consensus 149 ~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~~~~~-~~~~ 227 (306)
T PLN02725 149 GWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLMRRYS-GAEH 227 (306)
T ss_pred CCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHHHHHHhccc-cCcc
Confidence 999999999998875321 0 0011 1223334578999999999999998653 3467
Q ss_pred EEEeeCCc-chhhHHHHHHHHhhhc
Q 028525 183 FEVVNGEE-KVSDWKKCFSRLMEKT 206 (208)
Q Consensus 183 ~~i~~~~~-~~~e~~~~~~~~~~~~ 206 (208)
||++++.. +..|+++.+.+..+.+
T Consensus 228 ~ni~~~~~~s~~e~~~~i~~~~~~~ 252 (306)
T PLN02725 228 VNVGSGDEVTIKELAELVKEVVGFE 252 (306)
T ss_pred eEeCCCCcccHHHHHHHHHHHhCCC
Confidence 89987664 9999999999988754
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-18 Score=137.56 Aligned_cols=187 Identities=18% Similarity=0.228 Sum_probs=130.6
Q ss_pred cccCccHHHHHHHHHhCC--CcEEEEEcCchhhh---hhc-CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC------
Q 028525 8 KRKKMNFRMVILSLIVKR--TRIKALVKDKRNAM---ESF-GTYVESMAGDASNKKFLKTALRGVRSIICPSEG------ 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~---~~~-~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~------ 75 (208)
+++|+||++++++|+++| ++|++++|+..+.. ... ..++.++.+|++|++++.++++++|+||++++.
T Consensus 11 GatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~Ag~~~~~~~ 90 (324)
T TIGR03589 11 GGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAAALKQVPAA 90 (324)
T ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEECcccCCCchh
Confidence 579999999999999986 79999998765421 111 236889999999999999999999999987221
Q ss_pred ----------------chhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHH-------HhcCCCEEE
Q 028525 76 ----------------FISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESML-------MASGIPYTI 132 (208)
Q Consensus 76 ----------------~~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l-------~~~~~~~ti 132 (208)
.+.+++...++++||++||..... |..+|.. .|.. +|.++ +..++++++
T Consensus 91 ~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~~~---p~~~Y~~--sK~~---~E~l~~~~~~~~~~~gi~~~~ 162 (324)
T TIGR03589 91 EYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKAAN---PINLYGA--TKLA---SDKLFVAANNISGSKGTRFSV 162 (324)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCC---CCCHHHH--HHHH---HHHHHHHHHhhccccCcEEEE
Confidence 023456778899999999875432 3345544 2322 33333 246899999
Q ss_pred EeccccccCCCC-----------cc-ceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHH
Q 028525 133 IRTGVLQNTPGG-----------KQ-GFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKCF 199 (208)
Q Consensus 133 vRp~~~~~~~~~-----------~~-~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~ 199 (208)
+||+.+++.... +. .+.+..+.....+++++|++++++.+++... .++.|+ .+++ .++.|+++.+
T Consensus 163 lR~g~v~G~~~~~i~~~~~~~~~~~~~~~i~~~~~~r~~i~v~D~a~a~~~al~~~~-~~~~~~-~~~~~~sv~el~~~i 240 (324)
T TIGR03589 163 VRYGNVVGSRGSVVPFFKSLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSLERML-GGEIFV-PKIPSMKITDLAEAM 240 (324)
T ss_pred EeecceeCCCCCcHHHHHHHHHhCCCCeeeCCCCceEeeEEHHHHHHHHHHHHhhCC-CCCEEc-cCCCcEEHHHHHHHH
Confidence 999999874321 11 1222222223457999999999999998643 456774 4444 5899999988
Q ss_pred HHHhh
Q 028525 200 SRLME 204 (208)
Q Consensus 200 ~~~~~ 204 (208)
.+...
T Consensus 241 ~~~~~ 245 (324)
T TIGR03589 241 APECP 245 (324)
T ss_pred HhhCC
Confidence 87543
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-19 Score=139.37 Aligned_cols=194 Identities=13% Similarity=0.057 Sum_probs=122.0
Q ss_pred hhccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCH---HH-HHHHhc-----CCCEEEEcCC-
Q 028525 5 KKMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNK---KF-LKTALR-----GVRSIICPSE- 74 (208)
Q Consensus 5 ~~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~---~~-l~~~~~-----~~d~vi~~~~- 74 (208)
.+.+++|+||++|+++|+++|++++++.|+.+..... ..+...|+.|. ++ +.+++. ++|+|||+++
T Consensus 3 lVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A~~ 78 (308)
T PRK11150 3 IVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF----VNLVDLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEGAC 78 (308)
T ss_pred EEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHH----HhhhhhhhhhhhhHHHHHHHHhcccccCCccEEEECcee
Confidence 4457899999999999999999888887765432111 12233455443 33 233332 6899998721
Q ss_pred -C------------------chhhhhhhcCCCeEEEeceeeeccCCCC--------cccccchh-HHHhHHH-HHHHHHh
Q 028525 75 -G------------------FISNAGSLKGVQHVILLSQLSVYRGSGG--------IQALMKGN-ARKLAEQ-DESMLMA 125 (208)
Q Consensus 75 -~------------------~~~~a~~~~gv~~~v~~Ss~~~~~~~~~--------~~~~~~~~-~~~~~~~-~e~~l~~ 125 (208)
. .+.++|++.++ +||++||..+|+...+ ..|...+. .|...++ ++.+.+.
T Consensus 79 ~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~ 157 (308)
T PRK11150 79 SSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTDDFIEEREYEKPLNVYGYSKFLFDEYVRQILPE 157 (308)
T ss_pred cCCcCCChHHHHHHHHHHHHHHHHHHHHcCC-cEEEEcchHHhCcCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 03456777787 6999999988863211 11222221 2332221 2233334
Q ss_pred cCCCEEEEeccccccCCCCccc------------------eeeecC--CcCCCcccHHHHHHHHHHHhhCCCCCCcEEEE
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQG------------------FQFEEG--CAANGSLSKEDAAFICVEALESIPQTGLIFEV 185 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~~------------------~~~~~~--~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i 185 (208)
.+++++++||+.+++....... ..+..+ .....+++++|+|++++.+++.+. +.+||+
T Consensus 158 ~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~~~~~~--~~~yni 235 (308)
T PRK11150 158 ANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWFWENGV--SGIFNC 235 (308)
T ss_pred cCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHHHhcCC--CCeEEc
Confidence 6899999999998874211100 001111 122467899999999999887543 569999
Q ss_pred eeCC-cchhhHHHHHHHHhhh
Q 028525 186 VNGE-EKVSDWKKCFSRLMEK 205 (208)
Q Consensus 186 ~~~~-~~~~e~~~~~~~~~~~ 205 (208)
+++. .++.|+++.+.+..+.
T Consensus 236 ~~~~~~s~~el~~~i~~~~~~ 256 (308)
T PRK11150 236 GTGRAESFQAVADAVLAYHKK 256 (308)
T ss_pred CCCCceeHHHHHHHHHHHhCC
Confidence 9877 4999999999998763
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=135.49 Aligned_cols=182 Identities=16% Similarity=0.095 Sum_probs=120.2
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCC----C----c
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSE----G----F 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~----~----~ 76 (208)
-+++|+||++|+++|+++| +|++++|... .+.+|++|.+.+.++++ ++|+|||+++ . .
T Consensus 6 tG~~GfiGs~l~~~L~~~g-~V~~~~~~~~-----------~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~ 73 (299)
T PRK09987 6 FGKTGQVGWELQRALAPLG-NLIALDVHST-----------DYCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDKAESE 73 (299)
T ss_pred ECCCCHHHHHHHHHhhccC-CEEEeccccc-----------cccCCCCCHHHHHHHHHhcCCCEEEECCccCCcchhhcC
Confidence 3679999999999999999 7999987631 34689999999999998 4799998721 0 0
Q ss_pred --------------hhhhhhhcCCCeEEEeceeeeccCC--------CCcccccchhHHHhHHHHHHHHHhcCCCEEEEe
Q 028525 77 --------------ISNAGSLKGVQHVILLSQLSVYRGS--------GGIQALMKGNARKLAEQDESMLMASGIPYTIIR 134 (208)
Q Consensus 77 --------------~~~a~~~~gv~~~v~~Ss~~~~~~~--------~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivR 134 (208)
+.+++++.|+ +|||+||..+|+.. .+..|...+.. .+..+|++++....+++++|
T Consensus 74 ~~~~~~~N~~~~~~l~~aa~~~g~-~~v~~Ss~~Vy~~~~~~p~~E~~~~~P~~~Yg~--sK~~~E~~~~~~~~~~~ilR 150 (299)
T PRK09987 74 PEFAQLLNATSVEAIAKAANEVGA-WVVHYSTDYVFPGTGDIPWQETDATAPLNVYGE--TKLAGEKALQEHCAKHLIFR 150 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-eEEEEccceEECCCCCCCcCCCCCCCCCCHHHH--HHHHHHHHHHHhCCCEEEEe
Confidence 2345667776 79999998888521 11122221111 12256888887777899999
Q ss_pred ccccccCCCCc------------cceeeecCCcC----CCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHH
Q 028525 135 TGVLQNTPGGK------------QGFQFEEGCAA----NGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKK 197 (208)
Q Consensus 135 p~~~~~~~~~~------------~~~~~~~~~~~----~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~ 197 (208)
|+++++....+ ..+.+ .++.. ......+|+++++..++..+.. +.+||++++. .+..|+++
T Consensus 151 ~~~vyGp~~~~~~~~~~~~~~~~~~~~v-~~d~~g~~~~~~~~~d~~~~~~~~~~~~~~~-~giyni~~~~~~s~~e~~~ 228 (299)
T PRK09987 151 TSWVYAGKGNNFAKTMLRLAKEREELSV-INDQFGAPTGAELLADCTAHAIRVALNKPEV-AGLYHLVASGTTTWHDYAA 228 (299)
T ss_pred cceecCCCCCCHHHHHHHHHhcCCCeEE-eCCCcCCCCCHHHHHHHHHHHHHHhhccCCC-CCeEEeeCCCCccHHHHHH
Confidence 99998643211 11111 11111 1122335667777766654433 3699999866 59999999
Q ss_pred HHHHHhhh
Q 028525 198 CFSRLMEK 205 (208)
Q Consensus 198 ~~~~~~~~ 205 (208)
.+.+.++.
T Consensus 229 ~i~~~~~~ 236 (299)
T PRK09987 229 LVFEEARK 236 (299)
T ss_pred HHHHHHHh
Confidence 88776543
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-18 Score=134.86 Aligned_cols=197 Identities=16% Similarity=0.176 Sum_probs=132.9
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhh----hhhc-CCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCCCc---
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNA----MESF-GTYVESMAGDASNKKFLKTALR--GVRSIICPSEGF--- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~----~~~~-~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~~--- 76 (208)
-++||+||++++++|+++|++|+++.|..... .... ..+++++.+|++|++++.++++ ++|+||++++..
T Consensus 5 ~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~~~~~ 84 (328)
T TIGR01179 5 TGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGLIAVG 84 (328)
T ss_pred eCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECccccCcc
Confidence 46799999999999999999999887643321 1111 0147788999999999999986 589999873210
Q ss_pred -------------------hhhhhhhcCCCeEEEeceeeeccCCC--------Ccccccchh-HHHhHHHHHHHHH----
Q 028525 77 -------------------ISNAGSLKGVQHVILLSQLSVYRGSG--------GIQALMKGN-ARKLAEQDESMLM---- 124 (208)
Q Consensus 77 -------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~--------~~~~~~~~~-~~~~~~~~e~~l~---- 124 (208)
+.+++.+.++++||++||..+|+... +..+...+. .|. .+|.+++
T Consensus 85 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~~~~~~~~~y~~sK~---~~e~~~~~~~~ 161 (328)
T TIGR01179 85 ESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISEDSPLGPINPYGRSKL---MSERILRDLSK 161 (328)
T ss_pred hhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCccccCCCCCCCchHHHHH---HHHHHHHHHHH
Confidence 23456677889999999987775221 111111111 222 2344443
Q ss_pred h-cCCCEEEEeccccccCCCCc------------------------cceee-e------cCCcCCCcccHHHHHHHHHHH
Q 028525 125 A-SGIPYTIIRTGVLQNTPGGK------------------------QGFQF-E------EGCAANGSLSKEDAAFICVEA 172 (208)
Q Consensus 125 ~-~~~~~tivRp~~~~~~~~~~------------------------~~~~~-~------~~~~~~~~v~~~Dva~~~~~~ 172 (208)
+ .+++++++||+.+++....+ ..+.+ + .+.....+++.+|+|+++..+
T Consensus 162 ~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~a~~~~~~ 241 (328)
T TIGR01179 162 ADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDLADAHLAA 241 (328)
T ss_pred hccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHHHHHHHHH
Confidence 3 68999999998887642110 00000 1 111224679999999999999
Q ss_pred hhCC--CCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 173 LESI--PQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 173 l~~~--~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
+... ...++.||++++. .+.+|+++.+.+..|++
T Consensus 242 ~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~ 278 (328)
T TIGR01179 242 LEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGVD 278 (328)
T ss_pred HhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCCC
Confidence 8753 2457899998765 59999999999998865
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-18 Score=136.13 Aligned_cols=195 Identities=11% Similarity=0.047 Sum_probs=129.8
Q ss_pred ccccCccHHHHHHHHHhCCCc-EEEEEcCc--hh---hhhhc-CCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCCC--
Q 028525 7 MKRKKMNFRMVILSLIVKRTR-IKALVKDK--RN---AMESF-GTYVESMAGDASNKKFLKTALR--GVRSIICPSEG-- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~-V~~~~R~~--~~---~~~~~-~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~-- 75 (208)
-+++|+||++|+++|+++|++ |+++.|.. .. ..... ..+++++.+|++|.+++.++++ ++|+|||+++.
T Consensus 6 TGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~ 85 (352)
T PRK10084 6 TGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMHLAAESH 85 (352)
T ss_pred ECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEECCcccC
Confidence 367999999999999999976 55455432 11 11111 2357889999999999999997 47999987221
Q ss_pred --c------------------hhhhhhhc---------CCCeEEEeceeeeccCC------------------CCccccc
Q 028525 76 --F------------------ISNAGSLK---------GVQHVILLSQLSVYRGS------------------GGIQALM 108 (208)
Q Consensus 76 --~------------------~~~a~~~~---------gv~~~v~~Ss~~~~~~~------------------~~~~~~~ 108 (208)
. +.+++... ++++||++||..+|+.. .+..+..
T Consensus 86 ~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~~~~~p~~ 165 (352)
T PRK10084 86 VDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETTAYAPSS 165 (352)
T ss_pred CcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccccCCCCCCC
Confidence 0 12334432 46799999998777531 0111222
Q ss_pred chh-HHHhHHHHHHHH----HhcCCCEEEEeccccccCCCC--------------cccee-eecCCcCCCcccHHHHHHH
Q 028525 109 KGN-ARKLAEQDESML----MASGIPYTIIRTGVLQNTPGG--------------KQGFQ-FEEGCAANGSLSKEDAAFI 168 (208)
Q Consensus 109 ~~~-~~~~~~~~e~~l----~~~~~~~tivRp~~~~~~~~~--------------~~~~~-~~~~~~~~~~v~~~Dva~~ 168 (208)
.+. .|.. +|.++ +..+++++++||+.+++.... +..+. ++.+.+..++++++|++++
T Consensus 166 ~Y~~sK~~---~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~a 242 (352)
T PRK10084 166 PYSASKAS---SDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARA 242 (352)
T ss_pred hhHHHHHH---HHHHHHHHHHHhCCCEEEEeccceeCCCcCccchHHHHHHHHhcCCCeEEeCCCCeEEeeEEHHHHHHH
Confidence 211 2332 34433 346999999999998864321 11111 2334445678999999999
Q ss_pred HHHHhhCCCCCCcEEEEeeCCc-chhhHHHHHHHHhhh
Q 028525 169 CVEALESIPQTGLIFEVVNGEE-KVSDWKKCFSRLMEK 205 (208)
Q Consensus 169 ~~~~l~~~~~~~~~~~i~~~~~-~~~e~~~~~~~~~~~ 205 (208)
+..+++.+ ..++.||++++.. +..|+++.+.+.+++
T Consensus 243 ~~~~l~~~-~~~~~yni~~~~~~s~~~~~~~i~~~~~~ 279 (352)
T PRK10084 243 LYKVVTEG-KAGETYNIGGHNEKKNLDVVLTICDLLDE 279 (352)
T ss_pred HHHHHhcC-CCCceEEeCCCCcCcHHHHHHHHHHHhcc
Confidence 99988754 3478999998765 899999999888874
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.4e-18 Score=135.64 Aligned_cols=193 Identities=11% Similarity=-0.031 Sum_probs=130.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-----hhhh------cCCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-----AMES------FGTYVESMAGDASNKKFLKTALRG--VRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-----~~~~------~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~ 74 (208)
+++|+||++++++|+++|++|++++|+.+. .... .+.+++++.+|++|.+++.++++. +|+|||+++
T Consensus 13 GatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~ 92 (340)
T PLN02653 13 GITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIKPDEVYNLAA 92 (340)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcCCCEEEECCc
Confidence 579999999999999999999999987542 1111 123588999999999999999975 599998722
Q ss_pred C----c------------------hhhhhhhcCCC-----eEEEeceeeeccCCC-------Ccccccchh-HHHhHHHH
Q 028525 75 G----F------------------ISNAGSLKGVQ-----HVILLSQLSVYRGSG-------GIQALMKGN-ARKLAEQD 119 (208)
Q Consensus 75 ~----~------------------~~~a~~~~gv~-----~~v~~Ss~~~~~~~~-------~~~~~~~~~-~~~~~~~~ 119 (208)
. . +.+++...+++ +||++||.++|+... +..+...|. +|. .+
T Consensus 93 ~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~E~~~~~p~~~Y~~sK~---~~ 169 (340)
T PLN02653 93 QSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPPPQSETTPFHPRSPYAVAKV---AA 169 (340)
T ss_pred ccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCCCCCCCCCCCCCChhHHHHH---HH
Confidence 1 0 13445556664 899999988886321 111221111 232 23
Q ss_pred HHHH----HhcCCCEEEEeccccccCCCC-----------------ccc--eeeecCCcCCCcccHHHHHHHHHHHhhCC
Q 028525 120 ESML----MASGIPYTIIRTGVLQNTPGG-----------------KQG--FQFEEGCAANGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 120 e~~l----~~~~~~~tivRp~~~~~~~~~-----------------~~~--~~~~~~~~~~~~v~~~Dva~~~~~~l~~~ 176 (208)
|.++ .+.+++++..|+...++.... +.. +.++.+.+...+++++|+|++++.+++.+
T Consensus 170 e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~a~a~~~~~~~~ 249 (340)
T PLN02653 170 HWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDASRDWGFAGDYVEAMWLMLQQE 249 (340)
T ss_pred HHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCcceecceeHHHHHHHHHHHHhcC
Confidence 4444 346787777776544432110 011 11233444567899999999999999865
Q ss_pred CCCCcEEEEeeCCc-chhhHHHHHHHHhhh
Q 028525 177 PQTGLIFEVVNGEE-KVSDWKKCFSRLMEK 205 (208)
Q Consensus 177 ~~~~~~~~i~~~~~-~~~e~~~~~~~~~~~ 205 (208)
. +..||++++.. +++|+++.+.+.++.
T Consensus 250 ~--~~~yni~~g~~~s~~e~~~~i~~~~g~ 277 (340)
T PLN02653 250 K--PDDYVVATEESHTVEEFLEEAFGYVGL 277 (340)
T ss_pred C--CCcEEecCCCceeHHHHHHHHHHHcCC
Confidence 3 46899998774 999999999998875
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-18 Score=136.20 Aligned_cols=196 Identities=14% Similarity=0.123 Sum_probs=131.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-------hhhh---cCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-------AMES---FGTYVESMAGDASNKKFLKTALR--GVRSIICPSE- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-------~~~~---~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~- 74 (208)
++||++|++|+++|+++||+|++++|.... .... ...+++++.+|++|++++.++++ ++|+||++++
T Consensus 12 GatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~d~vih~a~~ 91 (352)
T PLN02240 12 GGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRFDAVIHFAGL 91 (352)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCCCEEEEcccc
Confidence 469999999999999999999999875321 1111 12368899999999999999886 5899998722
Q ss_pred ---C------------------chhhhhhhcCCCeEEEeceeeeccCC--------CCcccccchh-HHHhHHHHHHHHH
Q 028525 75 ---G------------------FISNAGSLKGVQHVILLSQLSVYRGS--------GGIQALMKGN-ARKLAEQDESMLM 124 (208)
Q Consensus 75 ---~------------------~~~~a~~~~gv~~~v~~Ss~~~~~~~--------~~~~~~~~~~-~~~~~~~~e~~l~ 124 (208)
. .+.+++.+.++++||++||.++|+.. .+..+...+. .|. .+|++++
T Consensus 92 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~---~~e~~~~ 168 (352)
T PLN02240 92 KAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEEFPLSATNPYGRTKL---FIEEICR 168 (352)
T ss_pred CCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHH
Confidence 0 02345667789999999998877521 1111221111 222 3555554
Q ss_pred ----h-cCCCEEEEeccccccCC---------CC-c-------------c--cee-ee------cCCcCCCcccHHHHHH
Q 028525 125 ----A-SGIPYTIIRTGVLQNTP---------GG-K-------------Q--GFQ-FE------EGCAANGSLSKEDAAF 167 (208)
Q Consensus 125 ----~-~~~~~tivRp~~~~~~~---------~~-~-------------~--~~~-~~------~~~~~~~~v~~~Dva~ 167 (208)
. .+++.+++|++.+++.. .. . . .+. ++ .+.+...+++++|+|+
T Consensus 169 ~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~D~a~ 248 (352)
T PLN02240 169 DIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVRDYIHVMDLAD 248 (352)
T ss_pred HHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCCEEEeeEEHHHHHH
Confidence 2 47889999987665421 00 0 0 010 11 1122246799999999
Q ss_pred HHHHHhhCC----CCCCcEEEEeeCCc-chhhHHHHHHHHhhhc
Q 028525 168 ICVEALESI----PQTGLIFEVVNGEE-KVSDWKKCFSRLMEKT 206 (208)
Q Consensus 168 ~~~~~l~~~----~~~~~~~~i~~~~~-~~~e~~~~~~~~~~~~ 206 (208)
+++.+++.. ...++.||++++.. +.+|+++.+.+.++++
T Consensus 249 a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~ 292 (352)
T PLN02240 249 GHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKK 292 (352)
T ss_pred HHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCC
Confidence 998888642 34468999998775 9999999999998854
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=128.67 Aligned_cols=190 Identities=17% Similarity=0.174 Sum_probs=129.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-CCCEEEEcCCCc----------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-GVRSIICPSEGF---------- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-~~d~vi~~~~~~---------- 76 (208)
++||+||++|+.+|.+.||+|++++|++.+....+..++.. .+.+.+... ++|+||+.++..
T Consensus 5 GgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~-------~~~~~~~~~~~~DavINLAG~~I~~rrWt~~~ 77 (297)
T COG1090 5 GGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTL-------WEGLADALTLGIDAVINLAGEPIAERRWTEKQ 77 (297)
T ss_pred ccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccc-------cchhhhcccCCCCEEEECCCCccccccCCHHH
Confidence 57999999999999999999999999998876655444431 222333444 799999763321
Q ss_pred --------------hhhhhh--hcCCCeEEEeceeeeccCCC---------CcccccchhHHHhHHHHHHHHHhcCCCEE
Q 028525 77 --------------ISNAGS--LKGVQHVILLSQLSVYRGSG---------GIQALMKGNARKLAEQDESMLMASGIPYT 131 (208)
Q Consensus 77 --------------~~~a~~--~~gv~~~v~~Ss~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~~~~~t 131 (208)
+.++.. +.+.+.+|-.|.++.|+... +...+....++.|...+ .-....+.+++
T Consensus 78 K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~g~~Fla~lc~~WE~~a-~~a~~~gtRvv 156 (297)
T COG1090 78 KEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPPGDDFLAQLCQDWEEEA-LQAQQLGTRVV 156 (297)
T ss_pred HHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCCCCCCChHHHHHHHHHHHH-hhhhhcCceEE
Confidence 112222 34566777777788887321 12223322344443111 11123589999
Q ss_pred EEeccccccCCCCc-----------cceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCc-chhhHHHHH
Q 028525 132 IIRTGVLQNTPGGK-----------QGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEE-KVSDWKKCF 199 (208)
Q Consensus 132 ivRp~~~~~~~~~~-----------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~-~~~e~~~~~ 199 (208)
++|.|++.+..+.. -+-.++.+.+...|||++|+.++|..+++++...| .||++++.+ +.+++...+
T Consensus 157 llRtGvVLs~~GGaL~~m~~~fk~glGG~~GsGrQ~~SWIhieD~v~~I~fll~~~~lsG-p~N~taP~PV~~~~F~~al 235 (297)
T COG1090 157 LLRTGVVLSPDGGALGKMLPLFKLGLGGKLGSGRQWFSWIHIEDLVNAILFLLENEQLSG-PFNLTAPNPVRNKEFAHAL 235 (297)
T ss_pred EEEEEEEecCCCcchhhhcchhhhccCCccCCCCceeeeeeHHHHHHHHHHHHhCcCCCC-cccccCCCcCcHHHHHHHH
Confidence 99999998754321 11234566677899999999999999999887654 589987554 889999999
Q ss_pred HHHhhhc
Q 028525 200 SRLMEKT 206 (208)
Q Consensus 200 ~~~~~~~ 206 (208)
.+++.++
T Consensus 236 ~r~l~RP 242 (297)
T COG1090 236 GRALHRP 242 (297)
T ss_pred HHHhCCC
Confidence 9999875
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=126.32 Aligned_cols=201 Identities=14% Similarity=0.081 Sum_probs=146.1
Q ss_pred hhhccccCccHHHHHHHHHhCC--CcEEEEEcC-----chhhhhhc-CCceEEEEcCCCCHHHHHHHhc--CCCEEEEc-
Q 028525 4 MKKMKRKKMNFRMVILSLIVKR--TRIKALVKD-----KRNAMESF-GTYVESMAGDASNKKFLKTALR--GVRSIICP- 72 (208)
Q Consensus 4 ~~~~~~~G~iG~~l~~~Ll~~g--~~V~~~~R~-----~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~- 72 (208)
+.+-++-||||+++++.++++. ++|+.++.- .+.+.... .++..++++|+.|.+.+.++++ ..|+|++.
T Consensus 3 iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~VvhfA 82 (340)
T COG1088 3 ILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVHFA 82 (340)
T ss_pred EEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEEec
Confidence 3456789999999999999875 456777652 22333333 3489999999999999999998 58999965
Q ss_pred CCCc---------------------hhhhhhhcCCC-eEEEeceeeeccC-------------CCCcccccchhHHHhHH
Q 028525 73 SEGF---------------------ISNAGSLKGVQ-HVILLSQLSVYRG-------------SGGIQALMKGNARKLAE 117 (208)
Q Consensus 73 ~~~~---------------------~~~a~~~~gv~-~~v~~Ss~~~~~~-------------~~~~~~~~~~~~~~~~~ 117 (208)
+..+ +++++++...+ ||+++|+--+|+. -.|.+||..+++....
T Consensus 83 AESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKAasD~- 161 (340)
T COG1088 83 AESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASDL- 161 (340)
T ss_pred hhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCCCCcchhhhhHHH-
Confidence 2211 35667776654 9999999888862 1234455554332211
Q ss_pred HHHHHHHhcCCCEEEEeccccccCCC--------------Cccce-eeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcE
Q 028525 118 QDESMLMASGIPYTIIRTGVLQNTPG--------------GKQGF-QFEEGCAANGSLSKEDAAFICVEALESIPQTGLI 182 (208)
Q Consensus 118 ~~e~~l~~~~~~~tivRp~~~~~~~~--------------~~~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~ 182 (208)
.+..|.+.+|+++++.|++.-+++-. .+... .++.|.+...|++++|-++++..++++... |++
T Consensus 162 lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~kg~~-GE~ 240 (340)
T COG1088 162 LVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLTKGKI-GET 240 (340)
T ss_pred HHHHHHHHcCCceEEecCCCCcCCCcCchhhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHHHhcCcC-Cce
Confidence 24566777999999999988765321 11122 246667778899999999999999987766 999
Q ss_pred EEEeeCCc-chhhHHHHHHHHhhhc
Q 028525 183 FEVVNGEE-KVSDWKKCFSRLMEKT 206 (208)
Q Consensus 183 ~~i~~~~~-~~~e~~~~~~~~~~~~ 206 (208)
|||+++.+ +-.|+++.+.+++++.
T Consensus 241 YNIgg~~E~~Nlevv~~i~~~l~~~ 265 (340)
T COG1088 241 YNIGGGNERTNLEVVKTICELLGKD 265 (340)
T ss_pred EEeCCCccchHHHHHHHHHHHhCcc
Confidence 99998776 7889999999999874
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-18 Score=133.42 Aligned_cols=194 Identities=15% Similarity=0.121 Sum_probs=123.5
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC-----C-c----
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE-----G-F---- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~-----~-~---- 76 (208)
-+++|+||+++++.|+++||+|++++|++.+........+ .++.+ ..+.+++.++|+||++++ + .
T Consensus 4 tGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~~~~~~~~ 78 (292)
T TIGR01777 4 TGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGY----KPWAP-LAESEALEGADAVINLAGEPIADKRWTEER 78 (292)
T ss_pred EcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceee----ecccc-cchhhhcCCCCEEEECCCCCcccccCCHHH
Confidence 3579999999999999999999999998876432211111 12222 445677889999998722 1 0
Q ss_pred --------------hhhhhhhcCCC--eEEEeceeeeccCCCC--c---c-cccchhHHHhHHHHHHH---HHhcCCCEE
Q 028525 77 --------------ISNAGSLKGVQ--HVILLSQLSVYRGSGG--I---Q-ALMKGNARKLAEQDESM---LMASGIPYT 131 (208)
Q Consensus 77 --------------~~~a~~~~gv~--~~v~~Ss~~~~~~~~~--~---~-~~~~~~~~~~~~~~e~~---l~~~~~~~t 131 (208)
+.+++++.+++ +|+++|+.++|+.... . . ++........+...|.. +++.+++++
T Consensus 79 ~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 158 (292)
T TIGR01777 79 KQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEEDSPAGDDFLAELCRDWEEAAQAAEDLGTRVV 158 (292)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcccCCCCCChHHHHHHHHHHHhhhchhcCCceE
Confidence 12456677774 5666677666653210 0 0 11010111111122333 334689999
Q ss_pred EEeccccccCCCCc--c---------ceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHH
Q 028525 132 IIRTGVLQNTPGGK--Q---------GFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKCF 199 (208)
Q Consensus 132 ivRp~~~~~~~~~~--~---------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~ 199 (208)
++||+.+++..... . ...++.+....++++++|+|+++..+++++.. +..|++++++ .+..|+++.+
T Consensus 159 ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~v~Dva~~i~~~l~~~~~-~g~~~~~~~~~~s~~di~~~i 237 (292)
T TIGR01777 159 LLRTGIVLGPKGGALAKMLPPFRLGLGGPLGSGRQWFSWIHIEDLVQLILFALENASI-SGPVNATAPEPVRNKEFAKAL 237 (292)
T ss_pred EEeeeeEECCCcchhHHHHHHHhcCcccccCCCCcccccEeHHHHHHHHHHHhcCccc-CCceEecCCCccCHHHHHHHH
Confidence 99999998753210 0 00122233446889999999999999987654 4689998766 4999999999
Q ss_pred HHHhhhc
Q 028525 200 SRLMEKT 206 (208)
Q Consensus 200 ~~~~~~~ 206 (208)
.+..+.+
T Consensus 238 ~~~~g~~ 244 (292)
T TIGR01777 238 ARALHRP 244 (292)
T ss_pred HHHhCCC
Confidence 9988754
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=132.82 Aligned_cols=193 Identities=11% Similarity=0.058 Sum_probs=127.6
Q ss_pred ccccCccHHHHHHHHHhCCC-cEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc----CCCEEEEcCC-C-c---
Q 028525 7 MKRKKMNFRMVILSLIVKRT-RIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR----GVRSIICPSE-G-F--- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~----~~d~vi~~~~-~-~--- 76 (208)
.++||+||+++++.|+++|+ +|.++.|..+... ........+..|+++.+.+..+.+ ++|+|||+++ . .
T Consensus 4 tGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~~~~~~ 82 (314)
T TIGR02197 4 TGGAGFIGSNLVKALNERGITDILVVDNLRDGHK-FLNLADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGACSDTTET 82 (314)
T ss_pred eCCcchhhHHHHHHHHHcCCceEEEEecCCCchh-hhhhhheeeeccCcchhHHHHHHhhccCCCCEEEECccccCcccc
Confidence 46799999999999999997 7888876543321 111112456788988888777664 7999998721 0 0
Q ss_pred ---------------hhhhhhhcCCCeEEEeceeeeccCCCC--------cccccchh-HHHhHHHHHHHHHh------c
Q 028525 77 ---------------ISNAGSLKGVQHVILLSQLSVYRGSGG--------IQALMKGN-ARKLAEQDESMLMA------S 126 (208)
Q Consensus 77 ---------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~--------~~~~~~~~-~~~~~~~~e~~l~~------~ 126 (208)
+.+++.+.++ +||++||.++|+.... ..+...+. .|. .+|.++++ .
T Consensus 83 ~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~e~~~~~~p~~~Y~~sK~---~~e~~~~~~~~~~~~ 158 (314)
T TIGR02197 83 DGEYMMENNYQYSKRLLDWCAEKGI-PFIYASSAATYGDGEAGFREGRELERPLNVYGYSKF---LFDQYVRRRVLPEAL 158 (314)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCC-cEEEEccHHhcCCCCCCcccccCcCCCCCHHHHHHH---HHHHHHHHHhHhhcc
Confidence 2345666776 7999999988862110 11211111 222 34554432 3
Q ss_pred CCCEEEEeccccccCCCCc-----c-------------ceee-------ecCCcCCCcccHHHHHHHHHHHhhCCCCCCc
Q 028525 127 GIPYTIIRTGVLQNTPGGK-----Q-------------GFQF-------EEGCAANGSLSKEDAAFICVEALESIPQTGL 181 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~~~~-----~-------------~~~~-------~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~ 181 (208)
+++++++||+.+++..... . ...+ +.+.+...++|++|+++++..++.. ..++
T Consensus 159 ~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~i~~~~~~--~~~~ 236 (314)
T TIGR02197 159 SAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDVNLWLLEN--GVSG 236 (314)
T ss_pred CCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHHHHHHHhc--ccCc
Confidence 6799999999988743210 0 0111 1122235689999999999999987 3467
Q ss_pred EEEEeeCCc-chhhHHHHHHHHhhhc
Q 028525 182 IFEVVNGEE-KVSDWKKCFSRLMEKT 206 (208)
Q Consensus 182 ~~~i~~~~~-~~~e~~~~~~~~~~~~ 206 (208)
+||++++.. +.+|+++.+.+..+.+
T Consensus 237 ~yni~~~~~~s~~e~~~~i~~~~g~~ 262 (314)
T TIGR02197 237 IFNLGTGRARSFNDLADAVFKALGKD 262 (314)
T ss_pred eEEcCCCCCccHHHHHHHHHHHhCCC
Confidence 999998764 9999999999998854
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-18 Score=127.17 Aligned_cols=190 Identities=15% Similarity=0.139 Sum_probs=141.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhh-hhh--cCC--ceEEEEcCCCCHHHHHHHhcCCCEEEEcCC------Cc-
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNA-MES--FGT--YVESMAGDASNKKFLKTALRGVRSIICPSE------GF- 76 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-~~~--~~~--~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~------~~- 76 (208)
.||++|++++.+|.+.|.+|++--|-.+.. ..+ .++ .+-+...|+.|++++.++++...+||+..+ .+
T Consensus 69 AtGFlGryvvnklak~GSQviiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~sNVVINLIGrd~eTknf~ 148 (391)
T KOG2865|consen 69 ATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHSNVVINLIGRDYETKNFS 148 (391)
T ss_pred ccccccHHHHHHHhhcCCeEEEeccCCccchhheeecccccceeeeccCCCCHHHHHHHHHhCcEEEEeeccccccCCcc
Confidence 499999999999999999999999865432 111 121 478889999999999999999999997622 11
Q ss_pred -----------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCCc
Q 028525 77 -----------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGK 145 (208)
Q Consensus 77 -----------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~ 145 (208)
+...|+++||.|||++|+.++.- .....+.. .+...|..+++.--+.||+||+.+++....-
T Consensus 149 f~Dvn~~~aerlAricke~GVerfIhvS~Lganv--~s~Sr~Lr-----sK~~gE~aVrdafPeAtIirPa~iyG~eDrf 221 (391)
T KOG2865|consen 149 FEDVNVHIAERLARICKEAGVERFIHVSCLGANV--KSPSRMLR-----SKAAGEEAVRDAFPEATIIRPADIYGTEDRF 221 (391)
T ss_pred cccccchHHHHHHHHHHhhChhheeehhhccccc--cChHHHHH-----hhhhhHHHHHhhCCcceeechhhhcccchhH
Confidence 34568899999999999988441 12222322 2225678888877779999999998765321
Q ss_pred -----------cceee-ecCC-cCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCc-chhhHHHHHHHHhhh
Q 028525 146 -----------QGFQF-EEGC-AANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEE-KVSDWKKCFSRLMEK 205 (208)
Q Consensus 146 -----------~~~~~-~~~~-~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~-~~~e~~~~~~~~~~~ 205 (208)
..+.+ ..+. ....++.+-|+|++|+.++.+|++.|++|...+++. ...|+++++-+++-+
T Consensus 222 ln~ya~~~rk~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvkDp~s~Gktye~vGP~~yql~eLvd~my~~~~~ 295 (391)
T KOG2865|consen 222 LNYYASFWRKFGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVKDPDSMGKTYEFVGPDRYQLSELVDIMYDMARE 295 (391)
T ss_pred HHHHHHHHHhcCceeeecCCcceeeccEEEehHHHHHHHhccCccccCceeeecCCchhhHHHHHHHHHHHHhh
Confidence 11112 2221 125568889999999999999999999999996664 889999998887644
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-17 Score=132.59 Aligned_cols=193 Identities=16% Similarity=0.189 Sum_probs=131.1
Q ss_pred ccccCccHHHHHHHHHhCC--CcEEEEEcCchhh------hhh----------cC-CceEEEEcCCCC------HHHHHH
Q 028525 7 MKRKKMNFRMVILSLIVKR--TRIKALVKDKRNA------MES----------FG-TYVESMAGDASN------KKFLKT 61 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~------~~~----------~~-~~v~~v~~Dl~d------~~~l~~ 61 (208)
-+.||++|++|+++|+++| ++|++++|+.+.. .+. .. .+++++.+|+++ .+.+..
T Consensus 5 tGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~~~~~ 84 (367)
T TIGR01746 5 TGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDAEWER 84 (367)
T ss_pred eccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHHHHHH
Confidence 3679999999999999998 6799999986521 110 01 468999999875 356777
Q ss_pred HhcCCCEEEEcCCC-----c--------------hhhhhhhcCCCeEEEeceeeeccCCCC----------------ccc
Q 028525 62 ALRGVRSIICPSEG-----F--------------ISNAGSLKGVQHVILLSQLSVYRGSGG----------------IQA 106 (208)
Q Consensus 62 ~~~~~d~vi~~~~~-----~--------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~----------------~~~ 106 (208)
+..++|+||++++. . +.+++.+.++++|+++||.+++..... ...
T Consensus 85 ~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (367)
T TIGR01746 85 LAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIVTPPPGLAGG 164 (367)
T ss_pred HHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCccccccccccccccCCC
Confidence 77889999987221 0 234566778889999999988753110 011
Q ss_pred ccchhHHHhHHHHHHHHHh---cCCCEEEEeccccccCCCCcc----ce---------e---eecCCc-CCCcccHHHHH
Q 028525 107 LMKGNARKLAEQDESMLMA---SGIPYTIIRTGVLQNTPGGKQ----GF---------Q---FEEGCA-ANGSLSKEDAA 166 (208)
Q Consensus 107 ~~~~~~~~~~~~~e~~l~~---~~~~~tivRp~~~~~~~~~~~----~~---------~---~~~~~~-~~~~v~~~Dva 166 (208)
|.. .|. .+|.+++. .+++++++|||.+++....+. .+ . +..... ...+++++|+|
T Consensus 165 Y~~--sK~---~~E~~~~~~~~~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~vddva 239 (367)
T TIGR01746 165 YAQ--SKW---VAELLVREASDRGLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAYPDSPELTEDLTPVDYVA 239 (367)
T ss_pred hHH--HHH---HHHHHHHHHHhcCCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCCCCCCCccccCcccHHHHH
Confidence 221 222 34555543 499999999999987422110 00 0 111111 24578999999
Q ss_pred HHHHHHhhCCCCC--CcEEEEeeCC-cchhhHHHHHHHHhhh
Q 028525 167 FICVEALESIPQT--GLIFEVVNGE-EKVSDWKKCFSRLMEK 205 (208)
Q Consensus 167 ~~~~~~l~~~~~~--~~~~~i~~~~-~~~~e~~~~~~~~~~~ 205 (208)
++++.++..+... +++||++++. .+.+|+++.+.+ .|.
T Consensus 240 ~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g~ 280 (367)
T TIGR01746 240 RAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLER-AGY 280 (367)
T ss_pred HHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHH-cCC
Confidence 9999998776542 7899999855 489999999887 554
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-17 Score=125.83 Aligned_cols=195 Identities=22% Similarity=0.258 Sum_probs=146.0
Q ss_pred hhccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC-----C-c--
Q 028525 5 KKMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE-----G-F-- 76 (208)
Q Consensus 5 ~~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~-----~-~-- 76 (208)
.+.++||++|++++++|+++||+|++++|++++..... .+++++.+|+.++.++..+++|.|.++++.+ . .
T Consensus 4 lV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~~~~~~~~~ 82 (275)
T COG0702 4 LVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLLDGSDAFRA 82 (275)
T ss_pred EEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEecccccccchhH
Confidence 45578999999999999999999999999999876655 7899999999999999999999999997622 1 1
Q ss_pred -----hhhhhhhc--CCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCCc----
Q 028525 77 -----ISNAGSLK--GVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGK---- 145 (208)
Q Consensus 77 -----~~~a~~~~--gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~---- 145 (208)
....+++. ++++++++|..++... ....+.. .+..+|..+..++++|+++||..++.+....
T Consensus 83 ~~~~~~~~~a~~a~~~~~~~~~~s~~~~~~~--~~~~~~~-----~~~~~e~~l~~sg~~~t~lr~~~~~~~~~~~~~~~ 155 (275)
T COG0702 83 VQVTAVVRAAEAAGAGVKHGVSLSVLGADAA--SPSALAR-----AKAAVEAALRSSGIPYTTLRRAAFYLGAGAAFIEA 155 (275)
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccCCCCCC--CccHHHH-----HHHHHHHHHHhcCCCeEEEecCeeeeccchhHHHH
Confidence 12334444 4788888888876541 1122221 2225789999999999999966665543211
Q ss_pred ----cceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHHHHHhhhcC
Q 028525 146 ----QGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKCFSRLMEKTG 207 (208)
Q Consensus 146 ----~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~~ 207 (208)
.......+.....++..+|++.++...+..+...++.|.+.+.. .+..+..+.+.+..+++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~i~~~d~a~~~~~~l~~~~~~~~~~~l~g~~~~~~~~~~~~l~~~~gr~~ 222 (275)
T COG0702 156 AEAAGLPVIPRGIGRLSPIAVDDVAEALAAALDAPATAGRTYELAGPEALTLAELASGLDYTIGRPV 222 (275)
T ss_pred HHhhCCceecCCCCceeeeEHHHHHHHHHHHhcCCcccCcEEEccCCceecHHHHHHHHHHHhCCcc
Confidence 00111122224677889999999999999888888999999654 488999999999988763
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-17 Score=136.09 Aligned_cols=198 Identities=15% Similarity=0.210 Sum_probs=130.8
Q ss_pred cccCccHHHHHHHHHhCC---CcEEEEEcCchh------hh-hh-----c---------------CCceEEEEcCCC---
Q 028525 8 KRKKMNFRMVILSLIVKR---TRIKALVKDKRN------AM-ES-----F---------------GTYVESMAGDAS--- 54 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g---~~V~~~~R~~~~------~~-~~-----~---------------~~~v~~v~~Dl~--- 54 (208)
++||++|++|++.|++.+ .+|++++|..+. .. +. + ..+++++.+|++
T Consensus 18 GaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i~GDl~~~~ 97 (491)
T PLN02996 18 GATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPVPGDISYDD 97 (491)
T ss_pred CCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEEecccCCcC
Confidence 579999999999999864 468999997542 10 00 0 146899999998
Q ss_pred ----CHHHHHHHhcCCCEEEEcCC--Cc-----------------hhhhhhhc-CCCeEEEeceeeeccCCCCc---ccc
Q 028525 55 ----NKKFLKTALRGVRSIICPSE--GF-----------------ISNAGSLK-GVQHVILLSQLSVYRGSGGI---QAL 107 (208)
Q Consensus 55 ----d~~~l~~~~~~~d~vi~~~~--~~-----------------~~~a~~~~-gv~~~v~~Ss~~~~~~~~~~---~~~ 107 (208)
|.+.+.++++++|+|||+++ .. +.++++.. ++++||++||..+|+...+. .+|
T Consensus 98 LGLs~~~~~~~l~~~vD~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vyG~~~~~i~E~~~ 177 (491)
T PLN02996 98 LGVKDSNLREEMWKEIDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCGEKSGLILEKPF 177 (491)
T ss_pred CCCChHHHHHHHHhCCCEEEECccccCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEecCCCceeeeecC
Confidence 55567788889999998822 10 23445554 78999999999888531100 000
Q ss_pred c-----------------------------------------------------chhHHH-hHHHHHHHHHh--cCCCEE
Q 028525 108 M-----------------------------------------------------KGNARK-LAEQDESMLMA--SGIPYT 131 (208)
Q Consensus 108 ~-----------------------------------------------------~~~~~~-~~~~~e~~l~~--~~~~~t 131 (208)
. ....+. .+..+|+++.+ .+++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE~lv~~~~~~lpv~ 257 (491)
T PLN02996 178 HMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGEMLLGNFKENLPLV 257 (491)
T ss_pred CCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHHHHHHHHhcCCCCEE
Confidence 0 000011 11246777764 489999
Q ss_pred EEeccccccCCCCc-------------------cc---eeeecCCcCCCcccHHHHHHHHHHHhhCC--C-CCCcEEEEe
Q 028525 132 IIRTGVLQNTPGGK-------------------QG---FQFEEGCAANGSLSKEDAAFICVEALESI--P-QTGLIFEVV 186 (208)
Q Consensus 132 ivRp~~~~~~~~~~-------------------~~---~~~~~~~~~~~~v~~~Dva~~~~~~l~~~--~-~~~~~~~i~ 186 (208)
++||+.+++..... .+ ..++.+.+...+++++|++++++.++... . ..+++||++
T Consensus 258 i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~~~~~~~~~~~~vYNi~ 337 (491)
T PLN02996 258 IIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVAMAAHAGGQGSEIIYHVG 337 (491)
T ss_pred EECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHHHHHhhccCCCCcEEEec
Confidence 99999997642100 00 11233444577899999999999988753 1 246799999
Q ss_pred eC--C-cchhhHHHHHHHHhhh
Q 028525 187 NG--E-EKVSDWKKCFSRLMEK 205 (208)
Q Consensus 187 ~~--~-~~~~e~~~~~~~~~~~ 205 (208)
++ . .+..|+.+.+.+..++
T Consensus 338 s~~~~~~s~~ei~~~~~~~~~~ 359 (491)
T PLN02996 338 SSLKNPVKFSNLHDFAYRYFSK 359 (491)
T ss_pred CCCCCcccHHHHHHHHHHHhhh
Confidence 87 3 4889999988877654
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-16 Score=134.51 Aligned_cols=174 Identities=14% Similarity=0.153 Sum_probs=124.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC-C-----------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE-G----------- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~-~----------- 75 (208)
+++|+||++|+++|+++||+|++++|.+... ...+++++.+|++|+. +.+++.++|+|||+++ .
T Consensus 7 GAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~---~~~~ve~v~~Dl~d~~-l~~al~~~D~VIHLAa~~~~~~~~vNv~G 82 (699)
T PRK12320 7 DATGAVGRSVTRQLIAAGHTVSGIAQHPHDA---LDPRVDYVCASLRNPV-LQELAGEADAVIHLAPVDTSAPGGVGITG 82 (699)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEEeCChhhc---ccCCceEEEccCCCHH-HHHHhcCCCEEEEcCccCccchhhHHHHH
Confidence 5799999999999999999999999876542 1246899999999985 7888899999998722 1
Q ss_pred --chhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCCc---ccee-
Q 028525 76 --FISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGK---QGFQ- 149 (208)
Q Consensus 76 --~~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~---~~~~- 149 (208)
.+.++|++.|+ ++||+||.. +.+ ..|. .+|.++..++++++++|++.+|+..... ..+.
T Consensus 83 t~nLleAA~~~Gv-RiV~~SS~~--G~~---~~~~---------~aE~ll~~~~~p~~ILR~~nVYGp~~~~~~~r~I~~ 147 (699)
T PRK12320 83 LAHVANAAARAGA-RLLFVSQAA--GRP---ELYR---------QAETLVSTGWAPSLVIRIAPPVGRQLDWMVCRTVAT 147 (699)
T ss_pred HHHHHHHHHHcCC-eEEEEECCC--CCC---cccc---------HHHHHHHhcCCCEEEEeCceecCCCCcccHhHHHHH
Confidence 13466778887 799999763 211 1111 3477787788999999999998742211 0000
Q ss_pred -eec--CCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCc-chhhHHHHHHHH
Q 028525 150 -FEE--GCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEE-KVSDWKKCFSRL 202 (208)
Q Consensus 150 -~~~--~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~-~~~e~~~~~~~~ 202 (208)
+.. .......++++|++++++.+++.+. +.+||++++.. +++|+.+.+...
T Consensus 148 ~l~~~~~~~pI~vIyVdDvv~alv~al~~~~--~GiyNIG~~~~~Si~el~~~i~~~ 202 (699)
T PRK12320 148 LLRSKVSARPIRVLHLDDLVRFLVLALNTDR--NGVVDLATPDTTNVVTAWRLLRSV 202 (699)
T ss_pred HHHHHHcCCceEEEEHHHHHHHHHHHHhCCC--CCEEEEeCCCeeEHHHHHHHHHHh
Confidence 000 0111223599999999999987643 34999998775 999988877654
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-16 Score=125.19 Aligned_cols=186 Identities=24% Similarity=0.283 Sum_probs=127.1
Q ss_pred hhccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC-----CceEEEEcCCCCHHHHHHHh-c----CCCEEEEcC-
Q 028525 5 KKMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG-----TYVESMAGDASNKKFLKTAL-R----GVRSIICPS- 73 (208)
Q Consensus 5 ~~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~-----~~v~~v~~Dl~d~~~l~~~~-~----~~d~vi~~~- 73 (208)
.+.+.||.+|+.+++.|+++||.|++++|+..+....+. .+...+..+...+.++..-+ . +..+++.|.
T Consensus 83 lVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~v~~~~g 162 (411)
T KOG1203|consen 83 LVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKGVVIVIKGAG 162 (411)
T ss_pred EEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhccccceeEEeccc
Confidence 335679999999999999999999999999887654433 24455555554433333322 2 223555442
Q ss_pred --CCc----------------hhhhhhhcCCCeEEEeceeeeccCCCCccccc-chhHHHhHHHHHHHHHhcCCCEEEEe
Q 028525 74 --EGF----------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALM-KGNARKLAEQDESMLMASGIPYTIIR 134 (208)
Q Consensus 74 --~~~----------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~-~~~~~~~~~~~e~~l~~~~~~~tivR 134 (208)
++. +.+||+.+|++||+++|+++......+.+.+. ......+++.+|+++++++++|++||
T Consensus 163 grp~~ed~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~~~~~~~~~~~~~~~~~~~k~~~e~~~~~Sgl~ytiIR 242 (411)
T KOG1203|consen 163 GRPEEEDIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGTKFNQPPNILLLNGLVLKAKLKAEKFLQDSGLPYTIIR 242 (411)
T ss_pred CCCCcccCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCcccCCCchhhhhhhhhhHHHHhHHHHHHhcCCCcEEEe
Confidence 111 45788999999999999999876555555554 22344555578999999999999999
Q ss_pred ccccccCCCCccceeee------cCCcCCCcccHHHHHHHHHHHhhCCCCCC-cEEEEeeCCc
Q 028525 135 TGVLQNTPGGKQGFQFE------EGCAANGSLSKEDAAFICVEALESIPQTG-LIFEVVNGEE 190 (208)
Q Consensus 135 p~~~~~~~~~~~~~~~~------~~~~~~~~v~~~Dva~~~~~~l~~~~~~~-~~~~i~~~~~ 190 (208)
|+.+....+........ ........+++.|+|+.++.++.++...+ ....++..+.
T Consensus 243 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~vael~~~all~~~~~~~k~~~~v~~~~ 305 (411)
T KOG1203|consen 243 PGGLEQDTGGQREVVVDDEKELLTVDGGAYSISRLDVAELVAKALLNEAATFKKVVELVLKPE 305 (411)
T ss_pred ccccccCCCCcceecccCccccccccccceeeehhhHHHHHHHHHhhhhhccceeEEeecCCC
Confidence 99987755544322221 11122248999999999999998887655 5555665444
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-17 Score=127.11 Aligned_cols=180 Identities=14% Similarity=0.102 Sum_probs=119.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCCC----------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG--VRSIICPSEG---------- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~~---------- 75 (208)
+.+|++|++|.+.|.++|++|+++.|+ ..|++|.+++.+.++. .|+||+|++-
T Consensus 7 GasG~lG~~l~~~l~~~~~~v~~~~r~---------------~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p 71 (286)
T PF04321_consen 7 GASGFLGSALARALKERGYEVIATSRS---------------DLDLTDPEAVAKLLEAFKPDVVINCAAYTNVDACEKNP 71 (286)
T ss_dssp TTTSHHHHHHHHHHTTTSEEEEEESTT---------------CS-TTSHHHHHHHHHHH--SEEEE------HHHHHHSH
T ss_pred CCCCHHHHHHHHHHhhCCCEEEEeCch---------------hcCCCCHHHHHHHHHHhCCCeEeccceeecHHhhhhCh
Confidence 569999999999999999999999776 6899999999999874 7999988321
Q ss_pred ------------chhhhhhhcCCCeEEEeceeeeccCC--------CCcccccchhHHHhHHHHHHHHHhcCCCEEEEec
Q 028525 76 ------------FISNAGSLKGVQHVILLSQLSVYRGS--------GGIQALMKGNARKLAEQDESMLMASGIPYTIIRT 135 (208)
Q Consensus 76 ------------~~~~a~~~~gv~~~v~~Ss~~~~~~~--------~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp 135 (208)
.+.+++...|+ ++||+||..++... .+..|...+ .+ .+.++|+.+++..-++.|+|+
T Consensus 72 ~~a~~iN~~~~~~la~~~~~~~~-~li~~STd~VFdG~~~~~y~E~d~~~P~~~Y-G~-~K~~~E~~v~~~~~~~~IlR~ 148 (286)
T PF04321_consen 72 EEAYAINVDATKNLAEACKERGA-RLIHISTDYVFDGDKGGPYTEDDPPNPLNVY-GR-SKLEGEQAVRAACPNALILRT 148 (286)
T ss_dssp HHHHHHHTHHHHHHHHHHHHCT--EEEEEEEGGGS-SSTSSSB-TTS----SSHH-HH-HHHHHHHHHHHH-SSEEEEEE
T ss_pred hhhHHHhhHHHHHHHHHHHHcCC-cEEEeeccEEEcCCcccccccCCCCCCCCHH-HH-HHHHHHHHHHHhcCCEEEEec
Confidence 02344566676 89999999887522 122222211 11 122578988875559999999
Q ss_pred cccccCCCCc------------cceeeecCCcCCCcccHHHHHHHHHHHhhCCCC---CCcEEEEeeCC-cchhhHHHHH
Q 028525 136 GVLQNTPGGK------------QGFQFEEGCAANGSLSKEDAAFICVEALESIPQ---TGLIFEVVNGE-EKVSDWKKCF 199 (208)
Q Consensus 136 ~~~~~~~~~~------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~---~~~~~~i~~~~-~~~~e~~~~~ 199 (208)
+++++....+ ..+.. ..+....+++.+|+|+++..++++... .+.+||+++.+ .+..|+++.+
T Consensus 149 ~~~~g~~~~~~~~~~~~~~~~~~~i~~-~~d~~~~p~~~~dlA~~i~~l~~~~~~~~~~~Giyh~~~~~~~S~~e~~~~i 227 (286)
T PF04321_consen 149 SWVYGPSGRNFLRWLLRRLRQGEPIKL-FDDQYRSPTYVDDLARVILELIEKNLSGASPWGIYHLSGPERVSRYEFAEAI 227 (286)
T ss_dssp -SEESSSSSSHHHHHHHHHHCTSEEEE-ESSCEE--EEHHHHHHHHHHHHHHHHH-GGG-EEEE---BS-EEHHHHHHHH
T ss_pred ceecccCCCchhhhHHHHHhcCCeeEe-eCCceeCCEEHHHHHHHHHHHHHhcccccccceeEEEecCcccCHHHHHHHH
Confidence 9998763221 11111 224446778999999999999986542 46899999866 5999999999
Q ss_pred HHHhhhc
Q 028525 200 SRLMEKT 206 (208)
Q Consensus 200 ~~~~~~~ 206 (208)
.+..+..
T Consensus 228 ~~~~~~~ 234 (286)
T PF04321_consen 228 AKILGLD 234 (286)
T ss_dssp HHHHTHC
T ss_pred HHHhCCC
Confidence 9988765
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-16 Score=118.17 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=119.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh-------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM-------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~-------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
++||.+|++|+++|+++||+|+++.|+..+.. ...+.++.++.+|+.|++++.++++ ++|+||+++
T Consensus 13 Gasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id~vi~~a 92 (249)
T PRK12825 13 GAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFGRIDILVNNA 92 (249)
T ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 46999999999999999999988888765421 1123468899999999999888774 469999873
Q ss_pred C----Cc----------------------hh----hhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHH
Q 028525 74 E----GF----------------------IS----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDES 121 (208)
Q Consensus 74 ~----~~----------------------~~----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~ 121 (208)
+ +. +. ..+++.++++||++||.+.+.+..+...|...+.. .+.+...+
T Consensus 93 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~y~~sK~~~~~~~~~~~~ 172 (249)
T PRK12825 93 GIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGWPGRSNYAAAKAGLVGLTKALAR 172 (249)
T ss_pred ccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 2 11 01 11245678899999998876544333444443211 11111223
Q ss_pred HHHhcCCCEEEEeccccccCCCCccc--eeeec--CCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQG--FQFEE--GCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~~--~~~~~--~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+...+++++++|||.+.+....... ..... ......+++.+|+++++..++.++. ..++.|++++|
T Consensus 173 ~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~i~~g 245 (249)
T PRK12825 173 ELAEYGITVNMVAPGDIDTDMKEATIEEAREAKDAETPLGRSGTPEDIARAVAFLCSDASDYITGQVIEVTGG 245 (249)
T ss_pred HHhhcCeEEEEEEECCccCCccccccchhHHhhhccCCCCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCC
Confidence 34457999999999999765432210 00111 1223457889999999999997653 35899999865
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.8e-16 Score=117.45 Aligned_cols=178 Identities=15% Similarity=0.076 Sum_probs=131.3
Q ss_pred hccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCC-----C---
Q 028525 6 KMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG--VRSIICPSE-----G--- 75 (208)
Q Consensus 6 ~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~-----~--- 75 (208)
.-+.+|++|.+|++.|. .+++|++++|.. .|++|++.+.+.+.. .|+||+++. .
T Consensus 5 i~G~~GqLG~~L~~~l~-~~~~v~a~~~~~---------------~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~ 68 (281)
T COG1091 5 ITGANGQLGTELRRALP-GEFEVIATDRAE---------------LDITDPDAVLEVIRETRPDVVINAAAYTAVDKAES 68 (281)
T ss_pred EEcCCChHHHHHHHHhC-CCceEEeccCcc---------------ccccChHHHHHHHHhhCCCEEEECccccccccccC
Confidence 34679999999999888 779999998775 899999999999984 599998722 0
Q ss_pred --------------chhhhhhhcCCCeEEEeceeeeccC-----------CCCcccccchhHHHhHHHHHHHHHhcCCCE
Q 028525 76 --------------FISNAGSLKGVQHVILLSQLSVYRG-----------SGGIQALMKGNARKLAEQDESMLMASGIPY 130 (208)
Q Consensus 76 --------------~~~~a~~~~gv~~~v~~Ss~~~~~~-----------~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~ 130 (208)
.+..++.+.|. ++||+||-.++.. +.|.+.|.. .|. ..|+.+++.+-++
T Consensus 69 ~~e~A~~vNa~~~~~lA~aa~~~ga-~lVhiSTDyVFDG~~~~~Y~E~D~~~P~nvYG~--sKl---~GE~~v~~~~~~~ 142 (281)
T COG1091 69 EPELAFAVNATGAENLARAAAEVGA-RLVHISTDYVFDGEKGGPYKETDTPNPLNVYGR--SKL---AGEEAVRAAGPRH 142 (281)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHhCC-eEEEeecceEecCCCCCCCCCCCCCCChhhhhH--HHH---HHHHHHHHhCCCE
Confidence 13445667777 6899999887542 223333433 222 5688999999999
Q ss_pred EEEeccccccCCCCccc-----------eeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHH
Q 028525 131 TIIRTGVLQNTPGGKQG-----------FQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKC 198 (208)
Q Consensus 131 tivRp~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~ 198 (208)
.|+|.+|+++..+.+.. ......++...+++..|+|+++..++...... .+|++.+.. .|.-|+++.
T Consensus 143 ~I~Rtswv~g~~g~nFv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i~~ll~~~~~~-~~yH~~~~g~~Swydfa~~ 221 (281)
T COG1091 143 LILRTSWVYGEYGNNFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLEKEKEG-GVYHLVNSGECSWYEFAKA 221 (281)
T ss_pred EEEEeeeeecCCCCCHHHHHHHHhhcCCceEEECCeeeCCccHHHHHHHHHHHHhccccC-cEEEEeCCCcccHHHHHHH
Confidence 99999999976542211 11112355567889999999999998765543 499999855 489999998
Q ss_pred HHHHhhhc
Q 028525 199 FSRLMEKT 206 (208)
Q Consensus 199 ~~~~~~~~ 206 (208)
+.+..+..
T Consensus 222 I~~~~~~~ 229 (281)
T COG1091 222 IFEEAGVD 229 (281)
T ss_pred HHHHhCCC
Confidence 88887644
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.3e-16 Score=121.47 Aligned_cols=192 Identities=15% Similarity=0.185 Sum_probs=130.3
Q ss_pred cccCccHHHHHHHHHhCC--CcEEEEEcCchh--hh-hh---cCCceEEEEcCCCCHHHHHHHhcCCCEEEEc-CC---C
Q 028525 8 KRKKMNFRMVILSLIVKR--TRIKALVKDKRN--AM-ES---FGTYVESMAGDASNKKFLKTALRGVRSIICP-SE---G 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~--~~-~~---~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~~---~ 75 (208)
+++|++|++|+++|++++ .+|++++..+.. .. +. ....++++.+|+.|...+..++.++ .|+++ +. +
T Consensus 11 GG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~-~Vvh~aa~~~~~ 89 (361)
T KOG1430|consen 11 GGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQGA-VVVHCAASPVPD 89 (361)
T ss_pred CCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccCc-eEEEeccccCcc
Confidence 679999999999999998 899999987752 21 11 1457999999999999999999999 66654 21 1
Q ss_pred c------------------hhhhhhhcCCCeEEEeceeeeccCCC-----------Cc---ccccchhHHHhHHHHHHHH
Q 028525 76 F------------------ISNAGSLKGVQHVILLSQLSVYRGSG-----------GI---QALMKGNARKLAEQDESML 123 (208)
Q Consensus 76 ~------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~-----------~~---~~~~~~~~~~~~~~~e~~l 123 (208)
. ..++|.+.|++++||+||..+..+.. +. .+|.. .|. ++|+++
T Consensus 90 ~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p~p~~~~d~Y~~--sKa---~aE~~V 164 (361)
T KOG1430|consen 90 FVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLPYPLKHIDPYGE--SKA---LAEKLV 164 (361)
T ss_pred ccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCCCccccccccch--HHH---HHHHHH
Confidence 1 35678999999999999998854211 11 12322 222 467776
Q ss_pred Hh-c---CCCEEEEeccccccCCCCc-----------c--ceeeecCCcCCCcccHHHHHHHHHHHh-----hCCCCCCc
Q 028525 124 MA-S---GIPYTIIRTGVLQNTPGGK-----------Q--GFQFEEGCAANGSLSKEDAAFICVEAL-----ESIPQTGL 181 (208)
Q Consensus 124 ~~-~---~~~~tivRp~~~~~~~~~~-----------~--~~~~~~~~~~~~~v~~~Dva~~~~~~l-----~~~~~~~~ 181 (208)
.+ . ++.++++||..+|+.-... . .+..+.+.....+++.+.++.+.+.+. ..+...|+
T Consensus 165 l~an~~~~l~T~aLR~~~IYGpgd~~~~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~aL~~~~~~~~Gq 244 (361)
T KOG1430|consen 165 LEANGSDDLYTCALRPPGIYGPGDKRLLPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAARALLDKSPSVNGQ 244 (361)
T ss_pred HHhcCCCCeeEEEEccccccCCCCccccHHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHHHHHhcCCccCce
Confidence 64 2 4889999999998643211 1 122333334466777787887776543 23446799
Q ss_pred EEEEeeCCc-chhhHHHHHHHHhhh
Q 028525 182 IFEVVNGEE-KVSDWKKCFSRLMEK 205 (208)
Q Consensus 182 ~~~i~~~~~-~~~e~~~~~~~~~~~ 205 (208)
.|.|+++.. ..-++...+.+..|.
T Consensus 245 ~yfI~d~~p~~~~~~~~~l~~~lg~ 269 (361)
T KOG1430|consen 245 FYFITDDTPVRFFDFLSPLVKALGY 269 (361)
T ss_pred EEEEeCCCcchhhHHHHHHHHhcCC
Confidence 999998775 334444466555554
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-15 Score=115.81 Aligned_cols=196 Identities=14% Similarity=0.107 Sum_probs=136.0
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCch-------hhhhhcC--CceEEEEcCCCCHHHHHHHhc--CCCEEEEcCC-
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKR-------NAMESFG--TYVESMAGDASNKKFLKTALR--GVRSIICPSE- 74 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~-------~~~~~~~--~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~- 74 (208)
-++.|+||+|.+-+|+++||.|.+++.-.. +..+... ..+.++++|+.|.+.|++.|+ ..|+|+|.++
T Consensus 8 tGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V~Hfa~~ 87 (343)
T KOG1371|consen 8 TGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAVMHFAAL 87 (343)
T ss_pred ecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceEEeehhh
Confidence 368999999999999999999999974221 1233333 689999999999999999997 4699996511
Q ss_pred ---C------------------chhhhhhhcCCCeEEEeceeeeccCC------------CCcccccchhHHHhHHHHHH
Q 028525 75 ---G------------------FISNAGSLKGVQHVILLSQLSVYRGS------------GGIQALMKGNARKLAEQDES 121 (208)
Q Consensus 75 ---~------------------~~~~a~~~~gv~~~v~~Ss~~~~~~~------------~~~~~~~~~~~~~~~~~~e~ 121 (208)
+ .+.+++++.+++.+|+.||..+|+.+ .|.++|.. .+.. .|+
T Consensus 88 ~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~~~t~~p~~pyg~--tK~~---iE~ 162 (343)
T KOG1371|consen 88 AAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGK--TKKA---IEE 162 (343)
T ss_pred hccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCcCCCCCCCCcchh--hhHH---HHH
Confidence 1 03567888999999999999999732 13334433 3332 345
Q ss_pred HHH----hcCCCEEEEecccccc--------CCCCc------------------------cceeeecCCcCCCcccHHHH
Q 028525 122 MLM----ASGIPYTIIRTGVLQN--------TPGGK------------------------QGFQFEEGCAANGSLSKEDA 165 (208)
Q Consensus 122 ~l~----~~~~~~tivRp~~~~~--------~~~~~------------------------~~~~~~~~~~~~~~v~~~Dv 165 (208)
.+. ..++..+.+|-...++ ++..+ +.+....++...+.++.-|.
T Consensus 163 i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~dgt~vrdyi~v~Dl 242 (343)
T KOG1371|consen 163 IIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTIDGTIVRDYIHVLDL 242 (343)
T ss_pred HHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCcccccCCCeeecceeeEeh
Confidence 444 3568889999433322 11000 00111112333566788899
Q ss_pred HHHHHHHhhCCCC--CCcEEEEeeCCc-chhhHHHHHHHHhhhcC
Q 028525 166 AFICVEALESIPQ--TGLIFEVVNGEE-KVSDWKKCFSRLMEKTG 207 (208)
Q Consensus 166 a~~~~~~l~~~~~--~~~~~~i~~~~~-~~~e~~~~~~~~~~~~~ 207 (208)
|+..+.++..... .-++||++++.- ++.+++.++++..|.+-
T Consensus 243 a~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~ 287 (343)
T KOG1371|consen 243 ADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGVKI 287 (343)
T ss_pred HHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcCCC
Confidence 9999999987663 345899998774 89999999999998764
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-15 Score=113.81 Aligned_cols=183 Identities=15% Similarity=0.099 Sum_probs=117.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----h--cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----S--FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~--~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.+|++++++|+++|++|++++|+.++... . ...++.++.+|+.|++++.++++ .+|+||++.+
T Consensus 13 Gasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag 92 (251)
T PRK12826 13 GAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRLDILVANAG 92 (251)
T ss_pred CCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 359999999999999999999999998654221 1 12358899999999999988885 5799998721
Q ss_pred C----c----------------------hh----hhhhhcCCCeEEEeceeeec-cCCCCcccccchhHH--HhHHHHHH
Q 028525 75 G----F----------------------IS----NAGSLKGVQHVILLSQLSVY-RGSGGIQALMKGNAR--KLAEQDES 121 (208)
Q Consensus 75 ~----~----------------------~~----~a~~~~gv~~~v~~Ss~~~~-~~~~~~~~~~~~~~~--~~~~~~e~ 121 (208)
. . +. ..+...+.++||++||...+ .+..+...|...+.. .+.+....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~~~~~y~~sK~a~~~~~~~~~~ 172 (251)
T PRK12826 93 IFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRVGYPGLAHYAASKAGLVGFTRALAL 172 (251)
T ss_pred CCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 1 0 01 11234567899999998766 322223334332211 11111222
Q ss_pred HHHhcCCCEEEEeccccccCCCCccc--e---eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCc
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQG--F---QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEE 190 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~~--~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~ 190 (208)
.+...+++++++||+.+.+....... . .+........+++.+|+|++++.++..+. ..|+.|++.+|..
T Consensus 173 ~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~ 248 (251)
T PRK12826 173 ELAARNITVNSVHPGGVDTPMAGNLGDAQWAEAIAAAIPLGRLGEPEDIAAAVLFLASDEARYITGQTLPVDGGAT 248 (251)
T ss_pred HHHHcCeEEEEEeeCCCCcchhhhcCchHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCcCCcEEEECCCcc
Confidence 24446899999999998654221100 0 01111112356789999999999886554 2588999886554
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=115.97 Aligned_cols=181 Identities=15% Similarity=0.087 Sum_probs=118.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.+|++++++|+++|++|++++|++++.... .+.++.++.+|+.|++++.++++ ++|+||++++
T Consensus 11 G~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 11 GAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGVDILVNNAG 90 (258)
T ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 5699999999999999999999999987753221 13468899999999999988876 5799998732
Q ss_pred C----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHH
Q 028525 75 G----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESM 122 (208)
Q Consensus 75 ~----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 122 (208)
. . ....+++.+.++||++||...+.+..+...|...++. .+.+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~~~y~~~k~a~~~~~~~l~~~ 170 (258)
T PRK12429 91 IQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGSAGKAAYVSAKHGLIGLTKVVALE 170 (258)
T ss_pred CCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 1 0 1123445678899999998766544444455443221 111111111
Q ss_pred HHhcCCCEEEEeccccccCCCCcc--------ce--------eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEE
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQ--------GF--------QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFE 184 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~--------~~--------~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~ 184 (208)
+...+++++.+|||.+.+...... .. .+........+++.+|+|+++..++..+. ..++.|+
T Consensus 171 ~~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~ 250 (258)
T PRK12429 171 GATHGVTVNAICPGYVDTPLVRKQIPDLAKERGISEEEVLEDVLLPLVPQKRFTTVEEIADYALFLASFAAKGVTGQAWV 250 (258)
T ss_pred hcccCeEEEEEecCCCcchhhhhhhhhhccccCCChHHHHHHHHhccCCccccCCHHHHHHHHHHHcCccccCccCCeEE
Confidence 334689999999999864321100 00 01111123567899999999999887644 2478888
Q ss_pred EeeC
Q 028525 185 VVNG 188 (208)
Q Consensus 185 i~~~ 188 (208)
+.+|
T Consensus 251 ~~~g 254 (258)
T PRK12429 251 VDGG 254 (258)
T ss_pred eCCC
Confidence 8754
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-15 Score=115.27 Aligned_cols=181 Identities=14% Similarity=0.014 Sum_probs=117.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALRG-------VRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~~ 74 (208)
+.+|.||++++++|+++|++|+++.|++++..+ ..+..+.++++|++|.+++.++++. +|+||++++
T Consensus 14 Gasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag 93 (262)
T PRK13394 14 GAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSVDILVSNAG 93 (262)
T ss_pred CCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 358999999999999999999999998855321 1133577899999999998887753 799998722
Q ss_pred C----c--------------------------hhhhh-hhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 75 G----F--------------------------ISNAG-SLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 75 ~----~--------------------------~~~a~-~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
. . +.+.+ +..+.++||++||............|...+... +.+...+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~~~~~~~y~~sk~a~~~~~~~la~ 173 (262)
T PRK13394 94 IQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAK 173 (262)
T ss_pred cCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 1 0 11223 456788999999987654433344455433211 1111111
Q ss_pred HHHhcCCCEEEEeccccccCCCCcc--ce--------------eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEE
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQ--GF--------------QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIF 183 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~--~~--------------~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~ 183 (208)
.+...+++++++|||.+........ .. .+..+.....+++.+|+++++..++..+.. .++.|
T Consensus 174 ~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~l~~~~~~~~~g~~~ 253 (262)
T PRK13394 174 EGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGKTVDGVFTTVEDVAQTVLFLSSFPSAALTGQSF 253 (262)
T ss_pred HhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCccccCCcCCEE
Confidence 1233689999999998865321100 00 011122235678999999999999876543 37888
Q ss_pred EEeeC
Q 028525 184 EVVNG 188 (208)
Q Consensus 184 ~i~~~ 188 (208)
++.+|
T Consensus 254 ~~~~g 258 (262)
T PRK13394 254 VVSHG 258 (262)
T ss_pred eeCCc
Confidence 88754
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-15 Score=115.32 Aligned_cols=193 Identities=10% Similarity=0.090 Sum_probs=120.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|+||++++++|+++|++|+++.|++++.... .+.++.++.+|++|.+++.++++ ++|+||++++
T Consensus 9 Gasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~ 88 (276)
T PRK06482 9 GASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVSNAGYGL 88 (276)
T ss_pred cCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 5799999999999999999999999997664322 23468999999999998887764 4799998732
Q ss_pred -Cc----------------------hhhh----hhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 75 -GF----------------------ISNA----GSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 75 -~~----------------------~~~a----~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
+. +.++ +++.+.++||++||.+......+..+|..++... +.+...+.+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~l~~~~~~ 168 (276)
T PRK06482 89 FGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQIAYPGFSLYHATKWGIEGFVEAVAQEVAP 168 (276)
T ss_pred CcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccccCCCCCchhHHHHHHHHHHHHHHHHHhhc
Confidence 10 0112 2456778999999987554333344454433211 11111122234
Q ss_pred cCCCEEEEeccccccCCCCc----ccee-eec-----------CCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC
Q 028525 126 SGIPYTIIRTGVLQNTPGGK----QGFQ-FEE-----------GCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE 189 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~----~~~~-~~~-----------~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~ 189 (208)
.+++++++|||.+......+ .... +.. .....-..+.+|++++++.++..+.. +..|+++++.
T Consensus 169 ~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~a~~~~~~~~~~-~~~~~~g~~~ 247 (276)
T PRK06482 169 FGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADGSFAIPGDPQKMVQAMIASADQTPA-PRRLTLGSDA 247 (276)
T ss_pred cCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhccCCCCCCHHHHHHHHHHHHcCCCC-CeEEecChHH
Confidence 69999999999874322111 0000 000 00001124679999999999875543 4568988766
Q ss_pred c-chhhHHHHHHH
Q 028525 190 E-KVSDWKKCFSR 201 (208)
Q Consensus 190 ~-~~~e~~~~~~~ 201 (208)
. ++.|+++.+.+
T Consensus 248 ~~~~~~~~~~~~~ 260 (276)
T PRK06482 248 YASIRAALSERLA 260 (276)
T ss_pred HHHHHHHHHHHHH
Confidence 4 66655544333
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.8e-15 Score=115.13 Aligned_cols=195 Identities=12% Similarity=0.054 Sum_probs=122.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh----c----CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES----F----GTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~----~----~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+.+|.||++++++|+++|++|++++|+.++.... . ..++.++.+|+.|++++.++++ ++|++|++
T Consensus 14 Gasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~li~~ 93 (276)
T PRK05875 14 GGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHGRLHGVVHC 93 (276)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 4589999999999999999999999987653211 1 1357888999999999888876 57999987
Q ss_pred CC-----Cch----------------------hh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHH-HH
Q 028525 73 SE-----GFI----------------------SN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-DE 120 (208)
Q Consensus 73 ~~-----~~~----------------------~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~e 120 (208)
++ +.. .. .+...+..+|+++||...+.+..+..+|...+ ...+. ++
T Consensus 94 ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sK--~a~~~~~~ 171 (276)
T PRK05875 94 AGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTHRWFGAYGVTK--SAVDHLMK 171 (276)
T ss_pred CCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCCCCCcchHHHH--HHHHHHHH
Confidence 32 110 01 11223445899999988765444445555433 22111 11
Q ss_pred ---HHHHhcCCCEEEEeccccccCCCCcc----ce--eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCC
Q 028525 121 ---SMLMASGIPYTIIRTGVLQNTPGGKQ----GF--QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGE 189 (208)
Q Consensus 121 ---~~l~~~~~~~tivRp~~~~~~~~~~~----~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~ 189 (208)
..+...++++++||||++........ .. .+..........+.+|+|+++..++.++.. .++.+++.++.
T Consensus 172 ~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~ 251 (276)
T PRK05875 172 LAADELGPSWVRVNSIRPGLIRTDLVAPITESPELSADYRACTPLPRVGEVEDVANLAMFLLSDAASWITGQVINVDGGH 251 (276)
T ss_pred HHHHHhcccCeEEEEEecCccCCccccccccCHHHHHHHHcCCCCCCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCe
Confidence 12223579999999998753322110 00 000111123345789999999999987654 38899998765
Q ss_pred c-----chhhHHHHHHHHhh
Q 028525 190 E-----KVSDWKKCFSRLME 204 (208)
Q Consensus 190 ~-----~~~e~~~~~~~~~~ 204 (208)
. +..|+++.+.+..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~ 271 (276)
T PRK05875 252 MLRRGPDFSSMLEPVFGADG 271 (276)
T ss_pred eccCCccHHHHHHHHhhHHH
Confidence 3 34455554444443
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.9e-15 Score=114.04 Aligned_cols=184 Identities=13% Similarity=0.050 Sum_probs=116.6
Q ss_pred hccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHh-------cCCCEEEEc
Q 028525 6 KMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTAL-------RGVRSIICP 72 (208)
Q Consensus 6 ~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~-------~~~d~vi~~ 72 (208)
.-+.+|.+|++++++|+++|++|++++|+.++.... .+.++.++.+|+.|++++..++ .+.|+||++
T Consensus 6 ItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ 85 (255)
T TIGR01963 6 VTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLDILVNN 85 (255)
T ss_pred EcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 345799999999999999999999999987653221 2346889999999999665544 457999987
Q ss_pred CCC----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHH
Q 028525 73 SEG----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDE 120 (208)
Q Consensus 73 ~~~----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e 120 (208)
.+. . ....+++.++++||++||...+.+......|...+.. .+.+...
T Consensus 86 a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~~~~~y~~sk~a~~~~~~~~~ 165 (255)
T TIGR01963 86 AGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVASPFKSAYVAAKHGLIGLTKVLA 165 (255)
T ss_pred CCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCCCCCchhHHHHHHHHHHHHHHH
Confidence 211 0 0112345678899999987665443333344442211 1111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCc--------ccee--------eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcE
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGK--------QGFQ--------FEEGCAANGSLSKEDAAFICVEALESIP--QTGLI 182 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~--------~~~~--------~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~ 182 (208)
..+...+++++++||+.++...... .... +..+.....+++.+|+|++++.+++++. ..++.
T Consensus 166 ~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~ 245 (255)
T TIGR01963 166 LEVAAHGITVNAICPGYVRTPLVEKQIADQAKTRGIPEEQVIREVMLPGQPTKRFVTVDEVAETALFLASDAAAGITGQA 245 (255)
T ss_pred HHhhhcCeEEEEEecCccccHHHHHHHHhhhcccCCCchHHHHHHHHccCccccCcCHHHHHHHHHHHcCccccCccceE
Confidence 1122358999999999986432100 0000 1112233457899999999999997643 34788
Q ss_pred EEEeeCC
Q 028525 183 FEVVNGE 189 (208)
Q Consensus 183 ~~i~~~~ 189 (208)
|++.+|.
T Consensus 246 ~~~~~g~ 252 (255)
T TIGR01963 246 IVLDGGW 252 (255)
T ss_pred EEEcCcc
Confidence 9988553
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=110.47 Aligned_cols=178 Identities=13% Similarity=0.107 Sum_probs=118.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh----hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCCc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM----ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEGF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~----~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~~ 76 (208)
+.+|.||++++++|+++|++|++++|++.+.. +....+++++.+|+.|.+++.++++ ++|+||++.+..
T Consensus 14 Gatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 93 (239)
T PRK12828 14 GGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLDALVNIAGAF 93 (239)
T ss_pred CCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcCEEEECCccc
Confidence 46999999999999999999999999876522 2223467888999999998887775 579999872210
Q ss_pred --------------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHHHH
Q 028525 77 --------------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESMLM 124 (208)
Q Consensus 77 --------------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~l~ 124 (208)
+ ...+...++++||++||...+.+..+...|...+.. .+.+...+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~sk~a~~~~~~~~a~~~~ 173 (239)
T PRK12828 94 VWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAGPGMGAYAAAKAGVARLTEALAAELL 173 (239)
T ss_pred CcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 0 111234578899999999877654444455442211 11111122334
Q ss_pred hcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 125 ASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
..+++++.+|||.+.+...... . . ......+++.+|+|+++..++.++. ..++.+.+.++.
T Consensus 174 ~~~i~~~~i~pg~v~~~~~~~~-~-~--~~~~~~~~~~~dva~~~~~~l~~~~~~~~g~~~~~~g~~ 236 (239)
T PRK12828 174 DRGITVNAVLPSIIDTPPNRAD-M-P--DADFSRWVTPEQIAAVIAFLLSDEAQAITGASIPVDGGV 236 (239)
T ss_pred hcCeEEEEEecCcccCcchhhc-C-C--chhhhcCCCHHHHHHHHHHHhCcccccccceEEEecCCE
Confidence 5689999999999865421111 1 1 1112446899999999999987653 247777777543
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-15 Score=115.20 Aligned_cols=196 Identities=13% Similarity=0.126 Sum_probs=125.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++... .....+.++.+|++|++++.++++ ++|++|++++
T Consensus 10 Gasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~ 89 (275)
T PRK08263 10 GASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVVNNAGYGL 89 (275)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCcc
Confidence 569999999999999999999999998776432 223467888999999999877765 4699998732
Q ss_pred -Cc----------------------hh----hhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 75 -GF----------------------IS----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 75 -~~----------------------~~----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
+. +. ..+++.+.+++|++||.+.+.+......|...++.. +.+.....+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sKaa~~~~~~~la~e~~~ 169 (275)
T PRK08263 90 FGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAFPMSGIYHASKWALEGMSEALAQEVAE 169 (275)
T ss_pred ccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCCCCccHHHHHHHHHHHHHHHHHHHhhh
Confidence 10 01 123456778999999987765444444555433211 11111222344
Q ss_pred cCCCEEEEeccccccCCCCcc-----cee--------eecCCcCCCc-ccHHHHHHHHHHHhhCCCCCCcEEEEeeCC--
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQ-----GFQ--------FEEGCAANGS-LSKEDAAFICVEALESIPQTGLIFEVVNGE-- 189 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~-----~~~--------~~~~~~~~~~-v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-- 189 (208)
.+++++++|||.+........ ... +......... .+.+|+|++++.+++.+...++.+. .+++
T Consensus 170 ~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~~~~l~~~~~~~~~~~~-~~~~~~ 248 (275)
T PRK08263 170 FGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAEQWSERSVDGDPEAAAEALLKLVDAENPPLRLFL-GSGVLD 248 (275)
T ss_pred hCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHHHHHhccCCCCHHHHHHHHHHHHcCCCCCeEEEe-CchHHH
Confidence 799999999998754321100 000 0000111233 6789999999999987766555444 4343
Q ss_pred cchhhHHHHHHHHhh
Q 028525 190 EKVSDWKKCFSRLME 204 (208)
Q Consensus 190 ~~~~e~~~~~~~~~~ 204 (208)
.+..++.+.+.+-.+
T Consensus 249 ~~~~~~~~~~~~~~~ 263 (275)
T PRK08263 249 LAKADYERRLATWEE 263 (275)
T ss_pred HHHHHHHHHHHHHHH
Confidence 366777777766433
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-14 Score=111.16 Aligned_cols=171 Identities=11% Similarity=0.068 Sum_probs=110.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~-- 75 (208)
+++|.||++++++|+++|++|++++|++++.... .+.++.++.+|++|++++.++++ ++|+||++++.
T Consensus 11 GasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv~~ag~~~ 90 (277)
T PRK06180 11 GVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVLVNNAGYGH 90 (277)
T ss_pred cCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCccC
Confidence 5699999999999999999999999988764332 23468889999999999988876 47999987321
Q ss_pred --c----------------------hhh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 76 --F----------------------ISN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 76 --~----------------------~~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
. +.+ .++..+.++||++||.+......+...|...++.. +.+.....+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~ 170 (277)
T PRK06180 91 EGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITMPGIGYYCGSKFALEGISESLAKEVAP 170 (277)
T ss_pred CcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 0 011 13345667999999987665444445565533211 11111122334
Q ss_pred cCCCEEEEeccccccCCCCcc----ceeee-------------cCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQ----GFQFE-------------EGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~----~~~~~-------------~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
.+++++++|||.+........ ..... .......+.+.+|+|++++.+++.+..
T Consensus 171 ~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~l~~~~~ 240 (277)
T PRK06180 171 FGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQAREAKSGKQPGDPAKAAQAILAAVESDEP 240 (277)
T ss_pred hCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHcCCCC
Confidence 699999999999854321100 00000 001123345789999999999987654
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-14 Score=108.38 Aligned_cols=166 Identities=15% Similarity=0.100 Sum_probs=111.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|++.+..+. .+.++.++.+|++|++++.++++ ++|+||++++
T Consensus 14 G~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag 93 (239)
T PRK07666 14 GAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSIDILINNAG 93 (239)
T ss_pred cCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCccEEEEcCc
Confidence 3589999999999999999999999987653211 23468889999999999988876 6899998722
Q ss_pred C----c----------------------hh----hhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHH
Q 028525 75 G----F----------------------IS----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESM 122 (208)
Q Consensus 75 ~----~----------------------~~----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 122 (208)
. . +. ..+...+.+++|++||...+.+..+...|...+.. .+.+.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~~~~~~a~e 173 (239)
T PRK07666 94 ISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGAAVTSAYSASKFGVLGLTESLMQE 173 (239)
T ss_pred cccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 1 0 00 11224566789999988766544444455543321 111111222
Q ss_pred HHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~ 176 (208)
+...+++++++|||.+............ ......++.+|+|+++..++.++
T Consensus 174 ~~~~gi~v~~v~pg~v~t~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 174 VRKHNIRVTALTPSTVATDMAVDLGLTD---GNPDKVMQPEDLAEFIVAQLKLN 224 (239)
T ss_pred hhccCcEEEEEecCcccCcchhhccccc---cCCCCCCCHHHHHHHHHHHHhCC
Confidence 3457999999999998654332211111 11245678999999999999865
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-14 Score=109.85 Aligned_cols=181 Identities=13% Similarity=0.044 Sum_probs=116.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---c--CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---F--GTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~--~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~ 75 (208)
+.+|.||++++++|+++|++|++++|++++.... . +.++.++.+|+.|++++..+++ ..|+||++++.
T Consensus 12 Gasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 12 GASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVDILVNNAGT 91 (251)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 4699999999999999999999999998653221 1 2357899999999999988875 46999987221
Q ss_pred ----c---------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 76 ----F---------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 76 ----~---------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
. ....+.+.+.++||++||...+.+..+...|...+... +.+.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~sk~~~~~~~~~~a~~ 171 (251)
T PRK07231 92 THRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPRPGLGWYNASKGAVITLTKALAAE 171 (251)
T ss_pred CCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 0 01123346678999999988776555555555433211 11111112
Q ss_pred HHhcCCCEEEEeccccccCCCCcc------c--eeeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQ------G--FQFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~------~--~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
+...+++++.++||++........ . ..+........+++.+|+|.+++.++.++.. .++.+.+.+|
T Consensus 172 ~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg 247 (251)
T PRK07231 172 LGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLATIPLGRLGTPEDIANAALFLASDEASWITGVTLVVDGG 247 (251)
T ss_pred hhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCccccCCCCCeEEECCC
Confidence 234589999999998854321110 0 0011112234567889999999999876542 3566666543
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-14 Score=108.54 Aligned_cols=168 Identities=12% Similarity=0.035 Sum_probs=110.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.+|+.++++|+++|++|++++|++++..+. .+.++.++.+|++|++++..+++ ++|++|++++
T Consensus 13 G~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag 92 (241)
T PRK07454 13 GASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCPDVLINNAG 92 (241)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4689999999999999999999999987653221 12468899999999998887775 4799998732
Q ss_pred C----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 75 G----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 75 ~----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
. . ....+.+.+.++||++||...+.+..+..+|...+... +.+.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~~~~~~~~~~a~e 172 (241)
T PRK07454 93 MAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAFPQWGAYCVSKAALAAFTKCLAEE 172 (241)
T ss_pred ccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 1 0 01123345567999999988776544444555433211 11111122
Q ss_pred HHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
++..++++++||||.+.......... .........++.+|+|++++.++.++.
T Consensus 173 ~~~~gi~v~~i~pg~i~t~~~~~~~~--~~~~~~~~~~~~~~va~~~~~l~~~~~ 225 (241)
T PRK07454 173 ERSHGIRVCTITLGAVNTPLWDTETV--QADFDRSAMLSPEQVAQTILHLAQLPP 225 (241)
T ss_pred hhhhCCEEEEEecCcccCCccccccc--ccccccccCCCHHHHHHHHHHHHcCCc
Confidence 34569999999999975432111111 011112345789999999999998774
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-14 Score=109.75 Aligned_cols=178 Identities=9% Similarity=0.001 Sum_probs=112.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----Cc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE----GF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----~~ 76 (208)
+.+|.||++++++|+++|++|++++|+.++..+....++.++.+|++|++++.++++ ++|++|++++ +.
T Consensus 10 GasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~ 89 (273)
T PRK06182 10 GASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNNAGYGSYGA 89 (273)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCc
Confidence 468999999999999999999999999877654444568999999999999988876 6899998732 10
Q ss_pred --------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCC
Q 028525 77 --------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGI 128 (208)
Q Consensus 77 --------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~ 128 (208)
+...+++.+.++||++||.+..........|...++.. +.+.....+...++
T Consensus 90 ~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi 169 (273)
T PRK06182 90 IEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIYTPLGAWYHATKFALEGFSDALRLEVAPFGI 169 (273)
T ss_pred hhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCCCCCccHhHHHHHHHHHHHHHHHHHhcccCC
Confidence 01234556778999999976543222222344322211 11111122345799
Q ss_pred CEEEEeccccccCCCCc--ccee-------ee-----------cCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEe
Q 028525 129 PYTIIRTGVLQNTPGGK--QGFQ-------FE-----------EGCAANGSLSKEDAAFICVEALESIPQTGLIFEVV 186 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~~--~~~~-------~~-----------~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~ 186 (208)
+++++|||.+..+.... .... +. .........+.+|+|++++.++..... ...|.+.
T Consensus 170 ~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~i~~~~~~~~~-~~~~~~g 246 (273)
T PRK06182 170 DVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAASMRSTYGSGRLSDPSVIADAISKAVTARRP-KTRYAVG 246 (273)
T ss_pred EEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHhCCCC-CceeecC
Confidence 99999999986432110 0000 00 000012345779999999999875432 2345554
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=105.42 Aligned_cols=178 Identities=18% Similarity=0.158 Sum_probs=113.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cC--CceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FG--TYVESMAGDASNKKFLKTALR-------GVRSIICPSE- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~--~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~- 74 (208)
+++|.+|++++++|+++|++|++++|++++.... .. .++.++.+|+.|.+++.++++ ++|+||++.+
T Consensus 13 Gatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 13 GGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLDVLIANAGV 92 (237)
T ss_pred CCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4699999999999999999999999987653221 11 468899999999999888775 6899998722
Q ss_pred C---c----------------------hhhhh-h--hcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHHHHH
Q 028525 75 G---F----------------------ISNAG-S--LKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDESMLM 124 (208)
Q Consensus 75 ~---~----------------------~~~a~-~--~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~~l~ 124 (208)
. . +.+++ . ..+.++||++||.....+......|...++ ..+.+.....++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~y~~sk~a~~~~~~~~~~~~~ 172 (237)
T PRK07326 93 GHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNFFAGGAAYNASKFGLVGFSEAAMLDLR 172 (237)
T ss_pred CCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccCCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence 1 0 01111 1 234568999998876543333334433221 111111112234
Q ss_pred hcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC-CCcEEEEeeCCc
Q 028525 125 ASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ-TGLIFEVVNGEE 190 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~-~~~~~~i~~~~~ 190 (208)
..+++++.+|||.+........ ........++.+|+++++..++..+.. ....+.+.++.+
T Consensus 173 ~~gi~v~~v~pg~~~t~~~~~~-----~~~~~~~~~~~~d~a~~~~~~l~~~~~~~~~~~~~~~~~~ 234 (237)
T PRK07326 173 QYGIKVSTIMPGSVATHFNGHT-----PSEKDAWKIQPEDIAQLVLDLLKMPPRTLPSKIEVRPSRP 234 (237)
T ss_pred ccCcEEEEEeeccccCcccccc-----cchhhhccCCHHHHHHHHHHHHhCCccccccceEEecCCC
Confidence 5799999999999865432111 011112247899999999999987763 455566654443
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-14 Score=108.13 Aligned_cols=182 Identities=12% Similarity=0.080 Sum_probs=116.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALRG-------VRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~~ 74 (208)
+.+|.+|++++++|+++||+|++++|++.+.... .+.++.++.+|+.|++++.+++++ +|+||++++
T Consensus 12 Gasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag 91 (246)
T PRK05653 12 GASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGALDILVNNAG 91 (246)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 4699999999999999999999999987653211 134578889999999988887764 499998732
Q ss_pred C----c----------------------hh----hhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHH
Q 028525 75 G----F----------------------IS----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESM 122 (208)
Q Consensus 75 ~----~----------------------~~----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 122 (208)
. . +. ..+.+.++++||++||........+...|...+.. ...+...+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~~~~~~~y~~sk~~~~~~~~~l~~~ 171 (246)
T PRK05653 92 ITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTGNPGQTNYSAAKAGVIGFTKALALE 171 (246)
T ss_pred cCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccCCCCCcHhHhHHHHHHHHHHHHHHH
Confidence 1 0 01 11235677899999987654433333445442211 111111122
Q ss_pred HHhcCCCEEEEeccccccCCCCc-ccee---eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGK-QGFQ---FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~-~~~~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
+...+++++++||+.+.+..... .... +........+++.+|++++++.++.... ..++.|++.+|.
T Consensus 172 ~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~ 244 (246)
T PRK05653 172 LASRGITVNAVAPGFIDTDMTEGLPEEVKAEILKEIPLGRLGQPEEVANAVAFLASDAASYITGQVIPVNGGM 244 (246)
T ss_pred HhhcCeEEEEEEeCCcCCcchhhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEeCCCe
Confidence 33468999999999886543221 0000 0011122446778999999999986533 357888888653
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.2e-14 Score=108.90 Aligned_cols=183 Identities=15% Similarity=0.106 Sum_probs=112.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---c-CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCCc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---F-GTYVESMAGDASNKKFLKTALR-------GVRSIICPSEGF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~-~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~~ 76 (208)
+++|.||++++++|+++|++|+++.|+.+...+. . ..++.++.+|++|++++.++++ ++|+||++++..
T Consensus 18 Ga~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 18 GGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred CCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 3699999999999999999999999987653321 1 1246889999999999888774 689999872210
Q ss_pred ---------------------------hh----hhhhhcCC-CeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHH
Q 028525 77 ---------------------------IS----NAGSLKGV-QHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESM 122 (208)
Q Consensus 77 ---------------------------~~----~a~~~~gv-~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 122 (208)
.. ..+...+. ++|+++||........+...|...++. .+.+.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~~~~~~y~~~K~a~~~~~~~l~~~ 177 (264)
T PRK12829 98 GPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGYPGRTPYAASKWAVVGLVKSLAIE 177 (264)
T ss_pred CCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 01 11233445 578888876654333333345442221 111111122
Q ss_pred HHhcCCCEEEEeccccccCCCCcc--------cee-------eecCCcCCCcccHHHHHHHHHHHhhCC--CCCCcEEEE
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQ--------GFQ-------FEEGCAANGSLSKEDAAFICVEALESI--PQTGLIFEV 185 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~--------~~~-------~~~~~~~~~~v~~~Dva~~~~~~l~~~--~~~~~~~~i 185 (208)
+...+++++++|||.+........ ... .........+++.+|+|+++..++... ...++.|++
T Consensus 178 ~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i 257 (264)
T PRK12829 178 LGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLEKISLGRMVEPEDIAATALFLASPAARYITGQAISV 257 (264)
T ss_pred HhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCccCcEEEe
Confidence 334689999999999854321100 000 000111234788999999998888643 235788888
Q ss_pred eeCCc
Q 028525 186 VNGEE 190 (208)
Q Consensus 186 ~~~~~ 190 (208)
.+|..
T Consensus 258 ~~g~~ 262 (264)
T PRK12829 258 DGNVE 262 (264)
T ss_pred CCCcc
Confidence 87643
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=105.93 Aligned_cols=179 Identities=12% Similarity=0.060 Sum_probs=116.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-----cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-----FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-----~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~ 75 (208)
+++|.||++++++|+++|++|+++.|+.++..+. .+..+.++.+|++|++++.++++ ++|+||++++.
T Consensus 12 G~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 12 GAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLDVLVNNAGF 91 (252)
T ss_pred CCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5699999999999999999999999987653221 13357899999999999988775 57999987221
Q ss_pred ----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHH---H
Q 028525 76 ----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDES---M 122 (208)
Q Consensus 76 ----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~---~ 122 (208)
. +..++++.+.++|+++||.....+..+..+|...++.... .++. .
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sK~a~~~-~~~~l~~~ 170 (252)
T PRK06138 92 GCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGGRGRAAYVASKGAIAS-LTRAMALD 170 (252)
T ss_pred CCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCCccHHHHHHHHHHH-HHHHHHHH
Confidence 0 0122345677899999998665444444555553321111 1111 1
Q ss_pred HHhcCCCEEEEeccccccCCCCcccee-----------eecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQGFQ-----------FEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~~~~-----------~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
+...+++++.+|||.+.+..... ... +........+++.+|+|++++.++.++.. .|..+.+.+|
T Consensus 171 ~~~~~i~v~~v~pg~~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 248 (252)
T PRK06138 171 HATDGIRVNAVAPGTIDTPYFRR-IFARHADPEALREALRARHPMNRFGTAEEVAQAALFLASDESSFATGTTLVVDGG 248 (252)
T ss_pred HHhcCeEEEEEEECCccCcchhh-hhccccChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCC
Confidence 23458999999999885432111 000 00001112367899999999999877642 3666666543
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-14 Score=110.25 Aligned_cols=131 Identities=17% Similarity=0.178 Sum_probs=74.8
Q ss_pred cccCccHHHHHHHHHhCCC--cEEEEEcCchh------hhh-------------hcCCceEEEEcCCCC------HHHHH
Q 028525 8 KRKKMNFRMVILSLIVKRT--RIKALVKDKRN------AME-------------SFGTYVESMAGDASN------KKFLK 60 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~--~V~~~~R~~~~------~~~-------------~~~~~v~~v~~Dl~d------~~~l~ 60 (208)
+.||++|++|+++|++++. +|+.++|..+. ..+ ....+++++.||+++ ++++.
T Consensus 3 GaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~~~ 82 (249)
T PF07993_consen 3 GATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDEDYQ 82 (249)
T ss_dssp -TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHHHH
T ss_pred CCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHHhh
Confidence 5699999999999999986 89999998642 100 014689999999987 45677
Q ss_pred HHhcCCCEEEEcCCC--c-----------------hhhhhhhcCCCeEEEeceeeeccCCC-------------------
Q 028525 61 TALRGVRSIICPSEG--F-----------------ISNAGSLKGVQHVILLSQLSVYRGSG------------------- 102 (208)
Q Consensus 61 ~~~~~~d~vi~~~~~--~-----------------~~~a~~~~gv~~~v~~Ss~~~~~~~~------------------- 102 (208)
.+.+.+|+||||+.. + +.+.|.....++|+|+||..+.....
T Consensus 83 ~L~~~v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~~~~~~~~~~~~~~~~~~~ 162 (249)
T PF07993_consen 83 ELAEEVDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPGTIEEKVYPEEEDDLDPPQ 162 (249)
T ss_dssp HHHHH--EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TTT--SSS-HHH--EEE--T
T ss_pred ccccccceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCCcccccccccccccchhhc
Confidence 777889999988321 1 23345545566999999943332110
Q ss_pred -CcccccchhHHHhHHHHHHHHHh----cCCCEEEEeccccccCCC
Q 028525 103 -GIQALMKGNARKLAEQDESMLMA----SGIPYTIIRTGVLQNTPG 143 (208)
Q Consensus 103 -~~~~~~~~~~~~~~~~~e~~l~~----~~~~~tivRp~~~~~~~~ 143 (208)
..+.|.. .|. .+|+++++ .+++++|+|||.+.+.+.
T Consensus 163 ~~~~gY~~--SK~---~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~ 203 (249)
T PF07993_consen 163 GFPNGYEQ--SKW---VAERLLREAAQRHGLPVTIYRPGIIVGDSR 203 (249)
T ss_dssp TSEE-HHH--HHH---HHHHHHHHHHHHH---EEEEEE-EEE-SSS
T ss_pred cCCccHHH--HHH---HHHHHHHHHHhcCCceEEEEecCcccccCC
Confidence 0112221 222 45676663 499999999999987543
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.3e-14 Score=109.49 Aligned_cols=180 Identities=15% Similarity=0.125 Sum_probs=113.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------c--CCceEEEEcCCCCHHHHHHHh-------cCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------F--GTYVESMAGDASNKKFLKTAL-------RGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~--~~~v~~v~~Dl~d~~~l~~~~-------~~~d~vi~~ 72 (208)
+++|.+|+++++.|+++||+|++++|+++..... . ...+.++.+|++|++++.+ + .++|+||++
T Consensus 10 Gasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~~~id~vv~~ 88 (280)
T PRK06914 10 GASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEIGRIDLLVNN 88 (280)
T ss_pred CCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhcCCeeEEEEC
Confidence 5799999999999999999999999987653211 1 2368899999999988765 4 246999987
Q ss_pred CC----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 73 SE----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 73 ~~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
++ +. ....+++.+.++||++||........+..+|...+... +.+...
T Consensus 89 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sK~~~~~~~~~l~ 168 (280)
T PRK06914 89 AGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGFPGLSPYVSSKYALEGFSESLR 168 (280)
T ss_pred CcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCCCCCCchhHHhHHHHHHHHHHHH
Confidence 22 10 01123556678999999876554444445555432211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCc-cc-eeee-c----------------CCcCCCcccHHHHHHHHHHHhhCCCCCCc
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGK-QG-FQFE-E----------------GCAANGSLSKEDAAFICVEALESIPQTGL 181 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~-~~-~~~~-~----------------~~~~~~~v~~~Dva~~~~~~l~~~~~~~~ 181 (208)
..+...+++++++|||.+....... .. .... . ......+.+.+|+|++++.+++++... .
T Consensus 169 ~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~-~ 247 (280)
T PRK06914 169 LELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHINSGSDTFGNPIDVANLIVEIAESKRPK-L 247 (280)
T ss_pred HHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHcCCCCC-c
Confidence 1123469999999999875432110 00 0000 0 001134568899999999999877654 4
Q ss_pred EEEEeeCC
Q 028525 182 IFEVVNGE 189 (208)
Q Consensus 182 ~~~i~~~~ 189 (208)
.|++.++.
T Consensus 248 ~~~~~~~~ 255 (280)
T PRK06914 248 RYPIGKGV 255 (280)
T ss_pred ccccCCch
Confidence 67776544
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.8e-14 Score=107.25 Aligned_cols=172 Identities=15% Similarity=0.031 Sum_probs=110.7
Q ss_pred hccccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-CCCEEEEcCC----
Q 028525 6 KMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-GVRSIICPSE---- 74 (208)
Q Consensus 6 ~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-~~d~vi~~~~---- 74 (208)
..+++|.||++++++|+++|++|++++|++++... ..+.++.++.+|++|++++.+++. ++|+||++++
T Consensus 7 VtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ag~~~~ 86 (257)
T PRK09291 7 ITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNAGIGEA 86 (257)
T ss_pred EeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECCCcCCC
Confidence 34679999999999999999999999998765322 123368899999999999999887 7999998722
Q ss_pred Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhc
Q 028525 75 GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMAS 126 (208)
Q Consensus 75 ~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~ 126 (208)
+. ....+.+.+.++||++||............|...+... +.+..+..+...
T Consensus 87 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~ 166 (257)
T PRK09291 87 GAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITGPFTGAYCASKHALEAIAEAMHAELKPF 166 (257)
T ss_pred cCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccCCCCcchhHHHHHHHHHHHHHHHHHHHhc
Confidence 10 01223455678999999976554333334454432211 111122334557
Q ss_pred CCCEEEEeccccccCCCCcc---ceee----------ecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 127 GIPYTIIRTGVLQNTPGGKQ---GFQF----------EEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~~~~~---~~~~----------~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
++++++||||++..+..... ...+ .......+....+|+++.++.++..+.
T Consensus 167 gi~~~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (257)
T PRK09291 167 GIQVATVNPGPYLTGFNDTMAETPKRWYDPARNFTDPEDLAFPLEQFDPQEMIDAMVEVIPADT 230 (257)
T ss_pred CcEEEEEecCcccccchhhhhhhhhhhcchhhHHHhhhhhhccccCCCHHHHHHHHHHHhcCCC
Confidence 99999999998754321100 0000 000112344677999999998887654
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=108.63 Aligned_cols=190 Identities=14% Similarity=0.103 Sum_probs=126.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh----c-CCceEEEEcCCCCHHHHHHHhcCCCEEEEc-CC---C-c-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES----F-GTYVESMAGDASNKKFLKTALRGVRSIICP-SE---G-F- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~----~-~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~~---~-~- 76 (208)
++-|||||||++.|..+||+|++++--....... . ..+++.+.-|...+ .+.++|.|++. ++ - +
T Consensus 34 GgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~p-----l~~evD~IyhLAapasp~~y~ 108 (350)
T KOG1429|consen 34 GGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWIGHPNFELIRHDVVEP-----LLKEVDQIYHLAAPASPPHYK 108 (350)
T ss_pred cCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhccCcceeEEEeechhH-----HHHHhhhhhhhccCCCCcccc
Confidence 3689999999999999999999998644332211 1 23677777777654 67789999954 22 1 1
Q ss_pred ----------------hhhhhhhcCCCeEEEeceeeeccCC----------CCcccccchhHHHh-HHHHHHHH----Hh
Q 028525 77 ----------------ISNAGSLKGVQHVILLSQLSVYRGS----------GGIQALMKGNARKL-AEQDESML----MA 125 (208)
Q Consensus 77 ----------------~~~a~~~~gv~~~v~~Ss~~~~~~~----------~~~~~~~~~~~~~~-~~~~e~~l----~~ 125 (208)
..-.|++.+ +||++.||..+|+.+ +..++.....+... ++.+|.++ ++
T Consensus 109 ~npvktIktN~igtln~lglakrv~-aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cydegKr~aE~L~~~y~k~ 187 (350)
T KOG1429|consen 109 YNPVKTIKTNVIGTLNMLGLAKRVG-ARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYDEGKRVAETLCYAYHKQ 187 (350)
T ss_pred cCccceeeecchhhHHHHHHHHHhC-ceEEEeecccccCCcccCCCccccccccCcCCchhhhhHHHHHHHHHHHHhhcc
Confidence 112345555 799999999999732 11222222222221 12244444 45
Q ss_pred cCCCEEEEeccccccCCC---C-------------ccce-eeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC
Q 028525 126 SGIPYTIIRTGVLQNTPG---G-------------KQGF-QFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNG 188 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~---~-------------~~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~ 188 (208)
.|+.+.|.|+-..++... . ...+ .++.+.+-..++.++|+.++++.+++.+.... +||+|+
T Consensus 188 ~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll~Lm~s~~~~p--vNiGnp 265 (350)
T KOG1429|consen 188 EGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLLRLMESDYRGP--VNIGNP 265 (350)
T ss_pred cCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHHHHhcCCCcCC--cccCCc
Confidence 799999999877665321 1 1122 24556666788999999999999998776533 999986
Q ss_pred Cc-chhhHHHHHHHHhhh
Q 028525 189 EE-KVSDWKKCFSRLMEK 205 (208)
Q Consensus 189 ~~-~~~e~~~~~~~~~~~ 205 (208)
.+ ++.|+++.+.++.+.
T Consensus 266 ~e~Tm~elAemv~~~~~~ 283 (350)
T KOG1429|consen 266 GEFTMLELAEMVKELIGP 283 (350)
T ss_pred cceeHHHHHHHHHHHcCC
Confidence 65 999999999988743
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.3e-14 Score=108.47 Aligned_cols=166 Identities=12% Similarity=0.052 Sum_probs=113.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC--CceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG--TYVESMAGDASNKKFLKTALR-------GVRSIICPSEG--- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~--~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~--- 75 (208)
+++|.||++++++|+++|++|++.+|++++..+... ..+.++.+|++|++++.++++ ++|++|++++.
T Consensus 12 GasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~ 91 (273)
T PRK07825 12 GGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVNNAGVMPV 91 (273)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCC
Confidence 569999999999999999999999998876432211 247889999999998766653 46999987321
Q ss_pred -c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHHHHhc
Q 028525 76 -F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESMLMAS 126 (208)
Q Consensus 76 -~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~l~~~ 126 (208)
. ....+.+.+.++||++||.+...+..+...|..+++. .+.+.....++..
T Consensus 92 ~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~l~~el~~~ 171 (273)
T PRK07825 92 GPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPVPGMATYCASKHAVVGFTDAARLELRGT 171 (273)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCCCCCcchHHHHHHHHHHHHHHHHHhhcc
Confidence 0 0122445677899999998776554444556553321 1222233345567
Q ss_pred CCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 127 GIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
++++++|+||++........ ........++.+|+|+.++.++.++..
T Consensus 172 gi~v~~v~Pg~v~t~~~~~~-----~~~~~~~~~~~~~va~~~~~~l~~~~~ 218 (273)
T PRK07825 172 GVHVSVVLPSFVNTELIAGT-----GGAKGFKNVEPEDVAAAIVGTVAKPRP 218 (273)
T ss_pred CcEEEEEeCCcCcchhhccc-----ccccCCCCCCHHHHHHHHHHHHhCCCC
Confidence 99999999998754322111 011223568899999999999987653
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.9e-14 Score=104.92 Aligned_cols=175 Identities=14% Similarity=0.039 Sum_probs=112.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc--CCceEEEEcCCCCHHHHHHHhc---CCCEEEEcCC----Cc--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF--GTYVESMAGDASNKKFLKTALR---GVRSIICPSE----GF-- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~---~~d~vi~~~~----~~-- 76 (208)
+++|.+|+++++.|+++ |+|++++|+.++..+.. ..+++++++|++|++++.++++ ++|+||++.+ ..
T Consensus 10 G~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~ 88 (227)
T PRK08219 10 GASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAGVADLGPVA 88 (227)
T ss_pred cCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCCcCCCCCcc
Confidence 57999999999999999 99999999977643221 2358899999999999999887 5899998722 10
Q ss_pred ------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHh--cC-CC
Q 028525 77 ------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMA--SG-IP 129 (208)
Q Consensus 77 ------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~--~~-~~ 129 (208)
+.+.++ .+.+++|++||...+.+..+..+|.. +|...+..-+.++. .+ ++
T Consensus 89 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~~~v~~ss~~~~~~~~~~~~y~~--~K~a~~~~~~~~~~~~~~~i~ 165 (227)
T PRK08219 89 ESTVDEWRATLEVNVVAPAELTRLLLPALR-AAHGHVVFINSGAGLRANPGWGSYAA--SKFALRALADALREEEPGNVR 165 (227)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHHH-hCCCeEEEEcchHhcCcCCCCchHHH--HHHHHHHHHHHHHHHhcCCce
Confidence 001122 23468999998877654444445544 22222111122221 34 99
Q ss_pred EEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEee
Q 028525 130 YTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVN 187 (208)
Q Consensus 130 ~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~ 187 (208)
++.++||.+............+.......+++.+|+|++++.+++++. .+.++++.-
T Consensus 166 ~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~l~~~~-~~~~~~~~~ 222 (227)
T PRK08219 166 VTSVHPGRTDTDMQRGLVAQEGGEYDPERYLRPETVAKAVRFAVDAPP-DAHITEVVV 222 (227)
T ss_pred EEEEecCCccchHhhhhhhhhccccCCCCCCCHHHHHHHHHHHHcCCC-CCccceEEE
Confidence 999999986533211100000111123457899999999999998654 356676653
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.5e-14 Score=108.29 Aligned_cols=176 Identities=11% Similarity=0.034 Sum_probs=111.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+..+.++.+|++|.+++.++++ ++|++|++++
T Consensus 17 Ga~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~Ag 96 (274)
T PRK07775 17 GASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEIEVLVSGAG 96 (274)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4689999999999999999999999986553211 12357888999999999988775 4699998732
Q ss_pred C----c----------------------hh----hhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHH-HHHH-
Q 028525 75 G----F----------------------IS----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-DESM- 122 (208)
Q Consensus 75 ~----~----------------------~~----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~e~~- 122 (208)
. . +. ..+...+..+||++||...+.+..+...|...+ ...+. ++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK--~a~~~l~~~~~ 174 (274)
T PRK07775 97 DTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQRPHMGAYGAAK--AGLEAMVTNLQ 174 (274)
T ss_pred cCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCCCCcchHHHHH--HHHHHHHHHHH
Confidence 1 0 00 112234556899999987765443344554432 22111 1111
Q ss_pred --HHhcCCCEEEEeccccccCCCCc--cc-e-e-ee-----cCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEe
Q 028525 123 --LMASGIPYTIIRTGVLQNTPGGK--QG-F-Q-FE-----EGCAANGSLSKEDAAFICVEALESIPQTGLIFEVV 186 (208)
Q Consensus 123 --l~~~~~~~tivRp~~~~~~~~~~--~~-~-~-~~-----~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~ 186 (208)
+...+++++++|||.+....... .. . . +. .......+++.+|+|++++.+++++. .+..||+.
T Consensus 175 ~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~~~~~~~-~~~~~~~~ 249 (274)
T PRK07775 175 MELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAKWGQARHDYFLRASDLARAITFVAETPR-GAHVVNME 249 (274)
T ss_pred HHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHHhcccccccccCHHHHHHHHHHHhcCCC-CCCeeEEe
Confidence 22358999999999875432211 00 0 0 00 01112457899999999999998764 34566765
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-13 Score=105.52 Aligned_cols=182 Identities=14% Similarity=0.108 Sum_probs=114.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEE-EEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKA-LVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~-~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++ ..|+..+..+ ..+.++.++.+|++|++++.++++ ++|+||+++
T Consensus 11 Ga~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 90 (250)
T PRK08063 11 GSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGRLDVFVNNA 90 (250)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 46999999999999999999877 4676654221 123468889999999999888775 469999873
Q ss_pred CC----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 EG----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~~----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+. . ....+.+.+.++||++||.....+..+...|...+... +.+....
T Consensus 91 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~y~~sK~a~~~~~~~~~~ 170 (250)
T PRK08063 91 ASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRYLENYTTVGVSKAALEALTRYLAV 170 (250)
T ss_pred CCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 21 0 01123345667999999987655433444554432211 1111111
Q ss_pred HHHhcCCCEEEEeccccccCCCCc---c-cee--eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGK---Q-GFQ--FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~---~-~~~--~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.+...+++++.|+||.+....... . .+. ..........++.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 171 ~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~ 246 (250)
T PRK08063 171 ELAPKGIAVNAVSGGAVDTDALKHFPNREELLEDARAKTPAGRMVEPEDVANAVLFLCSPEADMIRGQTIIVDGGR 246 (250)
T ss_pred HHhHhCeEEEeEecCcccCchhhhccCchHHHHHHhcCCCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCCe
Confidence 223468999999999885432110 0 000 0001112346889999999999987654 247888877554
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.9e-14 Score=108.35 Aligned_cols=171 Identities=13% Similarity=0.047 Sum_probs=111.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--------CCCEEEEcCC----C
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--------GVRSIICPSE----G 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--------~~d~vi~~~~----~ 75 (208)
+++|.||++++++|+++|++|++++|++++.......+++++.+|++|.+++.++++ ..|++|++++ +
T Consensus 11 GasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~ 90 (277)
T PRK05993 11 GCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALFNNGAYGQPG 90 (277)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEECCCcCCCC
Confidence 468999999999999999999999999877554444468899999999998877764 3599997721 1
Q ss_pred c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcC
Q 028525 76 F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASG 127 (208)
Q Consensus 76 ~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~ 127 (208)
. +...+++.+.++||++||...+.+......|..+++.. +.+.....+...+
T Consensus 91 ~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~l~~el~~~g 170 (277)
T PRK05993 91 AVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLVPMKYRGAYNASKFAIEGLSLTLRMELQGSG 170 (277)
T ss_pred CcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcCCCCccchHHHHHHHHHHHHHHHHHHhhhhC
Confidence 0 11234556778999999987665444445555433211 1111122345579
Q ss_pred CCEEEEeccccccCCCCccc------eeee----------------c-CCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 128 IPYTIIRTGVLQNTPGGKQG------FQFE----------------E-GCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 128 ~~~tivRp~~~~~~~~~~~~------~~~~----------------~-~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
+++++|+||.+......... .... . .......++.+++|+.++.+++.+..
T Consensus 171 i~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~i~~a~~~~~~ 244 (277)
T PRK05993 171 IHVSLIEPGPIETRFRANALAAFKRWIDIENSVHRAAYQQQMARLEGGGSKSRFKLGPEAVYAVLLHALTAPRP 244 (277)
T ss_pred CEEEEEecCCccCchhhHHHHHHhhhhccccchhHHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHHHcCCCC
Confidence 99999999988543211100 0000 0 00011235789999999999986653
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=106.59 Aligned_cols=189 Identities=15% Similarity=0.180 Sum_probs=123.1
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCchhhh---hhc-----CCceE----EEEcCCCCHHHHHHHhc--CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKRNAM---ESF-----GTYVE----SMAGDASNKKFLKTALR--GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~---~~~-----~~~v~----~v~~Dl~d~~~l~~~~~--~~d~vi~~ 72 (208)
+++|-||++||++|++.+ .++++++|++.+.. ..+ ..++. .+.+|+.|.+.+.++++ ++|+|||+
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHa 84 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHA 84 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE-
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEEC
Confidence 679999999999999987 78999999987631 112 22343 45899999999999999 89999998
Q ss_pred CCCc----------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHh-----
Q 028525 73 SEGF----------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMA----- 125 (208)
Q Consensus 73 ~~~~----------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~----- 125 (208)
+.-. +.+++.+.++++||++||-.+.. |.+.+.. .|. .+|.++..
T Consensus 85 AA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~---PtnvmGa--tKr---laE~l~~~~~~~~ 156 (293)
T PF02719_consen 85 AALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVN---PTNVMGA--TKR---LAEKLVQAANQYS 156 (293)
T ss_dssp -----HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS-----SHHHH--HHH---HHHHHHHHHCCTS
T ss_pred hhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCC---CCcHHHH--HHH---HHHHHHHHHhhhC
Confidence 4311 35677889999999999977654 3344443 333 45777764
Q ss_pred --cCCCEEEEeccccccCCCC-----------ccceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cc
Q 028525 126 --SGIPYTIIRTGVLQNTPGG-----------KQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EK 191 (208)
Q Consensus 126 --~~~~~tivRp~~~~~~~~~-----------~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~ 191 (208)
.+..++.+|.|.+.+..+. +.++.+..++-..=+++.++.++.+..++.... .|++|-+--|+ ..
T Consensus 157 ~~~~t~f~~VRFGNVlgS~GSVip~F~~Qi~~g~PlTvT~p~mtRffmti~EAv~Lvl~a~~~~~-~geifvl~mg~~v~ 235 (293)
T PF02719_consen 157 GNSDTKFSSVRFGNVLGSRGSVIPLFKKQIKNGGPLTVTDPDMTRFFMTIEEAVQLVLQAAALAK-GGEIFVLDMGEPVK 235 (293)
T ss_dssp SSS--EEEEEEE-EETTGTTSCHHHHHHHHHTTSSEEECETT-EEEEE-HHHHHHHHHHHHHH---TTEEEEE---TCEE
T ss_pred CCCCcEEEEEEecceecCCCcHHHHHHHHHHcCCcceeCCCCcEEEEecHHHHHHHHHHHHhhCC-CCcEEEecCCCCcC
Confidence 1457999999999875432 223334333322445788999998888876443 46788877655 48
Q ss_pred hhhHHHHHHHHhhh
Q 028525 192 VSDWKKCFSRLMEK 205 (208)
Q Consensus 192 ~~e~~~~~~~~~~~ 205 (208)
+.|+++.+.++.|.
T Consensus 236 I~dlA~~~i~~~g~ 249 (293)
T PF02719_consen 236 ILDLAEAMIELSGL 249 (293)
T ss_dssp CCCHHHHHHHHTT-
T ss_pred HHHHHHHHHhhccc
Confidence 99999999988874
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=104.88 Aligned_cols=180 Identities=14% Similarity=0.086 Sum_probs=114.0
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~ 75 (208)
++|.||+++++.|+++|++|+++.|++++.... ...++.++.+|++|++++.++++ ++|+||++.+.
T Consensus 15 a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 15 AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 589999999999999999999999987653221 12358899999999999888774 57999987321
Q ss_pred ----c----------------------hhh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHH
Q 028525 76 ----F----------------------ISN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 76 ----~----------------------~~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
. +.+ .+...+..+||++||...+.+......|...+... +.+.....+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~y~~sK~~~~~~~~~l~~~~ 174 (250)
T PRK12939 95 TNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGAPKLGAYVASKGAVIGMTRSLAREL 174 (250)
T ss_pred CCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 0 001 12334456999999977654333333444422211 111111223
Q ss_pred HhcCCCEEEEeccccccCCCCc-cc--e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGK-QG--F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~-~~--~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
...+++++.++||.+....... .. . .+........+++.+|+|++++.++..+. ..|+.+.+.+|
T Consensus 175 ~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg 246 (250)
T PRK12939 175 GGRGITVNAIAPGLTATEATAYVPADERHAYYLKGRALERLQVPDDVAGAVLFLLSDAARFVTGQLLPVNGG 246 (250)
T ss_pred hhhCEEEEEEEECCCCCccccccCChHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 3468999999999874332111 00 0 01111223456788999999999987643 35788887754
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-13 Score=102.65 Aligned_cols=181 Identities=13% Similarity=0.114 Sum_probs=112.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh----hh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA----ME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~----~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
++||.+|++++++|+++|++|+++.|+..+. .. ....++.++.+|+.|++++.++++ ++|+||+++
T Consensus 12 G~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a 91 (248)
T PRK05557 12 GASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFGGVDILVNNA 91 (248)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4699999999999999999999988876531 11 123467889999999999888775 579999873
Q ss_pred CC----c----------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHH
Q 028525 74 EG----F----------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDES 121 (208)
Q Consensus 74 ~~----~----------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~ 121 (208)
+. . + ...+.+.+.++||++||........+...|...+.. .+.+...+
T Consensus 92 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~~~~~y~~sk~a~~~~~~~~a~ 171 (248)
T PRK05557 92 GITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNPGQANYAASKAGVIGFTKSLAR 171 (248)
T ss_pred CcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCCCCchhHHHHHHHHHHHHHHHH
Confidence 21 0 0 112234566789999987554333334445443221 11111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCcc--ce--eeecCCcCCCcccHHHHHHHHHHHhhCC--CCCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQ--GF--QFEEGCAANGSLSKEDAAFICVEALESI--PQTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~--~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~--~~~~~~~~i~~~ 188 (208)
.++..+++++++|||.+........ .. .+........+.+.+|+|+++..++..+ ...++.|++.++
T Consensus 172 ~~~~~~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~~ 244 (248)
T PRK05557 172 ELASRGITVNAVAPGFIETDMTDALPEDVKEAILAQIPLGRLGQPEEIASAVAFLASDEAAYITGQTLHVNGG 244 (248)
T ss_pred HhhhhCeEEEEEecCccCCccccccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCcccCCccccEEEecCC
Confidence 2345689999999998743221110 00 0001111234578899999998887652 235788998754
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=104.08 Aligned_cols=177 Identities=17% Similarity=0.104 Sum_probs=122.0
Q ss_pred Cchhhhc-----cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------cCCceEEEEcCCCCHHHHHHHhc----
Q 028525 1 MGPMKKM-----KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------FGTYVESMAGDASNKKFLKTALR---- 64 (208)
Q Consensus 1 ~~~~~~~-----~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~~~~v~~v~~Dl~d~~~l~~~~~---- 64 (208)
||||.++ +.|+.||.++++.|.++||+|+.+.|+.+++.++ .+..++++..|++|++++.....
T Consensus 1 ~~~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 1 PGPMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred CCCCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHh
Confidence 5677654 4699999999999999999999999999874322 12357899999999999888774
Q ss_pred ---CCCEEEEcCC----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchh
Q 028525 65 ---GVRSIICPSE----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGN 111 (208)
Q Consensus 65 ---~~d~vi~~~~----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~ 111 (208)
.+|++|++++ +.+ ..-+.+.+-.+||.++|...+.+..-...|...+
T Consensus 81 ~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p~~avY~ATK 160 (265)
T COG0300 81 RGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPTPYMAVYSATK 160 (265)
T ss_pred cCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCCcchHHHHHHH
Confidence 4799997632 110 1124456667999999998876554445555544
Q ss_pred H--HHhHHHHHHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 112 A--RKLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 112 ~--~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
+ ..+.+.....|+.+|+.++.+.||.+.....................++.+|+|+..+..+.+.+
T Consensus 161 a~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~~~~~~~~~~~~~~~~~~~~~va~~~~~~l~~~k 228 (265)
T COG0300 161 AFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDAKGSDVYLLSPGELVLSPEDVAEAALKALEKGK 228 (265)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEecCccccccccccccccccccchhhccCHHHHHHHHHHHHhcCC
Confidence 3 22333444556778999999999998654432111111111223556788999999999998654
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-13 Score=104.27 Aligned_cols=194 Identities=13% Similarity=0.044 Sum_probs=123.8
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh----cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES----FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~----~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~ 75 (208)
-+++|.||++++++|+++|++|++++|++++.... ...++.++.+|+.|.+++..++. ++|+||++.+.
T Consensus 8 tGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 8 TGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVLVANAGA 87 (257)
T ss_pred ECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 35789999999999999999999999987663221 22358899999999999988775 37999987321
Q ss_pred ----ch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHH
Q 028525 76 ----FI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 76 ----~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
.. ...+.+.+.++||++||...... .....|...++.. +.+...+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-~~~~~y~~sK~a~~~~~~~~a~~~ 166 (257)
T PRK07074 88 ARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAA-LGHPAYSAAKAGLIHYTKLLAVEY 166 (257)
T ss_pred CCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCC-CCCcccHHHHHHHHHHHHHHHHHH
Confidence 10 01223456678999998654321 1223444422211 111111122
Q ss_pred HhcCCCEEEEeccccccCCCCcc----ceeee---cCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCc-chh
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQ----GFQFE---EGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEE-KVS 193 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~----~~~~~---~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~-~~~ 193 (208)
...+++++.+|||++........ ..... .......+++.+|+++++..++.+.. ..++.+++.+|.. +.+
T Consensus 167 ~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~ 246 (257)
T PRK07074 167 GRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKKWYPLQDFATPDDVANAVLFLASPAARAITGVCLPVDGGLTAGNR 246 (257)
T ss_pred hHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCchhcCcCCcEEEeCCCcCcCCh
Confidence 33589999999998754322110 00000 11223567899999999999996543 2478888876665 688
Q ss_pred hHHHHHHH
Q 028525 194 DWKKCFSR 201 (208)
Q Consensus 194 e~~~~~~~ 201 (208)
|+.+.+.+
T Consensus 247 ~~~~~~~~ 254 (257)
T PRK07074 247 EMARTLTL 254 (257)
T ss_pred hhhhhhcc
Confidence 88877654
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=104.73 Aligned_cols=169 Identities=12% Similarity=0.051 Sum_probs=111.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~-- 75 (208)
+++|.||+++++.|+++|++|++++|++++.... .+.++.++.+|++|.+++.++++ ++|++|++++.
T Consensus 7 Gasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag~~~ 86 (248)
T PRK10538 7 GATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNNAGLAL 86 (248)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCccC
Confidence 5799999999999999999999999998764322 23468899999999999887764 68999987321
Q ss_pred ---c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHH-HH---HH
Q 028525 76 ---F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-DE---SM 122 (208)
Q Consensus 76 ---~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~e---~~ 122 (208)
. ....+.+.+.++||++||.....+..+...|...+ ...+. ++ ..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK--~~~~~~~~~l~~~ 164 (248)
T PRK10538 87 GLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATK--AFVRQFSLNLRTD 164 (248)
T ss_pred CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCCCCCCCchhHHHH--HHHHHHHHHHHHH
Confidence 0 01223456778999999987654443444555433 22211 11 12
Q ss_pred HHhcCCCEEEEeccccccCCCCccce-----eeecCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQGF-----QFEEGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
+...++.++.++||.+...+.....+ ..........+++.+|+|++++.++..+..
T Consensus 165 ~~~~~i~v~~v~pg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~ 225 (248)
T PRK10538 165 LHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVATLPAH 225 (248)
T ss_pred hcCCCcEEEEEeCCeecccccchhhccCcHHHHHhhccccCCCCHHHHHHHHHHHhcCCCc
Confidence 23468999999999985332111000 000001123457889999999999976654
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=106.84 Aligned_cols=179 Identities=12% Similarity=0.042 Sum_probs=110.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh--------cCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES--------FGTYVESMAGDASNKKFLKTALRG-------VRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~--------~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~ 72 (208)
+++|.||+++++.|+++|++|+++.|++++..+. ....+.++.+|++|++++.++++. +|+||++
T Consensus 11 Gas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~id~vi~~ 90 (256)
T PRK09186 11 GAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYGKIDGAVNC 90 (256)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcCCccEEEEC
Confidence 4689999999999999999999999987653211 122466779999999999888864 6999987
Q ss_pred CC-------Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCC----------Ccccccc
Q 028525 73 SE-------GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSG----------GIQALMK 109 (208)
Q Consensus 73 ~~-------~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~----------~~~~~~~ 109 (208)
++ .. ....+++.+.++||++||........ ....|..
T Consensus 91 A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~Y~~ 170 (256)
T PRK09186 91 AYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKFEIYEGTSMTSPVEYAA 170 (256)
T ss_pred CccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccchhccccccCCcchhHH
Confidence 31 00 01223456778999999875432110 0112333
Q ss_pred hhHHHhHHH----HHHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEE
Q 028525 110 GNARKLAEQ----DESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIF 183 (208)
Q Consensus 110 ~~~~~~~~~----~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~ 183 (208)
. |...+. ....+...++++++++||.+.+.........+.........++.+|+|++++.++.++.. .++.+
T Consensus 171 s--K~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~ 248 (256)
T PRK09186 171 I--KAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPEAFLNAYKKCCNGKGMLDPDDICGTLVFLLSDQSKYITGQNI 248 (256)
T ss_pred H--HHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCCHHHHHHHHhcCCccCCCCHHHhhhhHhheeccccccccCceE
Confidence 2 221111 112223468999999999875432111000010111224568999999999999975542 36666
Q ss_pred EEeeC
Q 028525 184 EVVNG 188 (208)
Q Consensus 184 ~i~~~ 188 (208)
.+.+|
T Consensus 249 ~~~~g 253 (256)
T PRK09186 249 IVDDG 253 (256)
T ss_pred EecCC
Confidence 66544
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=106.04 Aligned_cols=168 Identities=12% Similarity=0.016 Sum_probs=110.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcCCC----c
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG-------VRSIICPSEG----F 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~~~----~ 76 (208)
+++|.||++++++|+++|++|++++|++++... ..+++++++|++|++++.+++++ +|++|++++. .
T Consensus 11 Gasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~ag~~~~~~ 88 (270)
T PRK06179 11 GASSGIGRATAEKLARAGYRVFGTSRNPARAAP--IPGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNAGVGLAGA 88 (270)
T ss_pred cCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc--cCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCCcC
Confidence 569999999999999999999999998766432 24688999999999999988864 5999987321 0
Q ss_pred --------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCC
Q 028525 77 --------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGI 128 (208)
Q Consensus 77 --------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~ 128 (208)
....+++.+.++||++||...+.+......|...+... +.+.....++..++
T Consensus 89 ~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi 168 (270)
T PRK06179 89 AEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLPAPYMALYAASKHAVEGYSESLDHEVRQFGI 168 (270)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCCCCCccHHHHHHHHHHHHHHHHHHHHhhhCc
Confidence 01124567788999999987655433333454432211 11112233455799
Q ss_pred CEEEEeccccccCCCCccce---eeec------------CCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 129 PYTIIRTGVLQNTPGGKQGF---QFEE------------GCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~~~~~---~~~~------------~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
++++++||++.......... .+.. ..........+|+|+.++.++..+.
T Consensus 169 ~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~~~~~ 232 (270)
T PRK06179 169 RVSLVEPAYTKTNFDANAPEPDSPLAEYDRERAVVSKAVAKAVKKADAPEVVADTVVKAALGPW 232 (270)
T ss_pred EEEEEeCCCcccccccccCCCCCcchhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCC
Confidence 99999999876432211000 0000 0011223566999999999987654
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=104.65 Aligned_cols=181 Identities=14% Similarity=0.070 Sum_probs=115.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC-CceEEEEcCCCCHHHHHHHhc---CCCEEEEcCCC----c---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG-TYVESMAGDASNKKFLKTALR---GVRSIICPSEG----F--- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~---~~d~vi~~~~~----~--- 76 (208)
+++|.||+++++.|+++|++|++++|+.++..+... .+..++.+|++|.+++.++++ ++|+||++.+. .
T Consensus 16 Ga~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ag~~~~~~~~~ 95 (245)
T PRK07060 16 GASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNCAGIASLESALD 95 (245)
T ss_pred CCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEECCCCCCCCChhh
Confidence 358999999999999999999999998876433221 246788999999999888886 37999987321 0
Q ss_pred -------------------hhhh----hhhcC-CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCCCE
Q 028525 77 -------------------ISNA----GSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGIPY 130 (208)
Q Consensus 77 -------------------~~~a----~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~~~ 130 (208)
+.++ +...+ .++||++||...+.+..+...|...+... +.+.....+...++++
T Consensus 96 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v 175 (245)
T PRK07060 96 MTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGLPDHLAYCASKAALDAITRVLCVELGPHGIRV 175 (245)
T ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCCCCCcHhHHHHHHHHHHHHHHHHHHhhhCeEE
Confidence 0011 12233 46899999987665444444555433211 1111111223468999
Q ss_pred EEEeccccccCCCCc---cce---eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 131 TIIRTGVLQNTPGGK---QGF---QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 131 tivRp~~~~~~~~~~---~~~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
+.+|||++....... ... .+........+++.+|+|++++.++..+.. .|+.+++.+|
T Consensus 176 ~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK07060 176 NSVNPTVTLTPMAAEAWSDPQKSGPMLAAIPLGRFAEVDDVAAPILFLLSDAASMVSGVSLPVDGG 241 (245)
T ss_pred EEEeeCCCCCchhhhhccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccCCccCcEEeECCC
Confidence 999999886543211 000 000111224568899999999999976542 4777777644
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.5e-13 Score=102.66 Aligned_cols=181 Identities=18% Similarity=0.086 Sum_probs=111.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEE-EcCchhhh----hh--cCCceEEEEcCCCCHHHHHHHhc-------------CCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKAL-VKDKRNAM----ES--FGTYVESMAGDASNKKFLKTALR-------------GVR 67 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~-~R~~~~~~----~~--~~~~v~~v~~Dl~d~~~l~~~~~-------------~~d 67 (208)
+.+|.||++++++|+++|++|.++ .|+.++.. .. .+..+.++.+|++|++++.++++ ++|
T Consensus 13 Gasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~~~~~~~id 92 (254)
T PRK12746 13 GASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQIRVGTSEID 92 (254)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhccccCCCCcc
Confidence 359999999999999999999885 56654421 11 12357889999999999988776 479
Q ss_pred EEEEcCCC----ch----------------------hhhhhh--cCCCeEEEeceeeeccCCCCcccccchhHHH--hHH
Q 028525 68 SIICPSEG----FI----------------------SNAGSL--KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAE 117 (208)
Q Consensus 68 ~vi~~~~~----~~----------------------~~a~~~--~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~ 117 (208)
++|++++. .. .+++.. ...++||++||..++.+..+...|..+++.. +.+
T Consensus 93 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~ 172 (254)
T PRK12746 93 ILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGFTGSIAYGLSKGALNTMTL 172 (254)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCCCCCcchHhhHHHHHHHHH
Confidence 99987321 10 011111 1235899999988765444445565433211 111
Q ss_pred HHHHHHHhcCCCEEEEeccccccCCCCc----cce-eeecCCc-CCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 118 QDESMLMASGIPYTIIRTGVLQNTPGGK----QGF-QFEEGCA-ANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 118 ~~e~~l~~~~~~~tivRp~~~~~~~~~~----~~~-~~~~~~~-~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.....+...++++++++||.+....... ..+ .+..... .....+.+|+|+++..++.++. ..++.|++.++
T Consensus 173 ~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~ 251 (254)
T PRK12746 173 PLAKHLGERGITVNTIMPGYTKTDINAKLLDDPEIRNFATNSSVFGRIGQVEDIADAVAFLASSDSRWVTGQIIDVSGG 251 (254)
T ss_pred HHHHHHhhcCcEEEEEEECCccCcchhhhccChhHHHHHHhcCCcCCCCCHHHHHHHHHHHcCcccCCcCCCEEEeCCC
Confidence 1111223468999999999875432111 000 0000111 1334578999999998887653 24788988754
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=104.90 Aligned_cols=181 Identities=11% Similarity=0.060 Sum_probs=116.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|+.|.+++.++++ ++|++|++++
T Consensus 10 Gas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 10 GGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPVDVLVNNAG 89 (250)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 5689999999999999999999999987653221 13468899999999999888775 4799998732
Q ss_pred C----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHH
Q 028525 75 G----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESM 122 (208)
Q Consensus 75 ~----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 122 (208)
. . ....++..+.++||++||.+.+.+......|...++. .+.+..-..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~ 169 (250)
T TIGR03206 90 WDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSSGEAVYAACKGGLVAFSKTMARE 169 (250)
T ss_pred CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 1 0 0112334567899999998877654444455543321 111111111
Q ss_pred HHhcCCCEEEEeccccccCCCCc------cce----eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGK------QGF----QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~------~~~----~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+...+++++++|||.+.+..... ... .+..........+.+|+|+++..++..+. ..++.+.+.+|
T Consensus 170 ~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 247 (250)
T TIGR03206 170 HARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIPLGRLGQPDDLPGAILFFSSDDASFITGQVLSVSGG 247 (250)
T ss_pred HhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCCccCCcCHHHHHHHHHHHcCcccCCCcCcEEEeCCC
Confidence 22358999999999886432110 000 00011111234578999999999887654 24788888754
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.4e-13 Score=102.78 Aligned_cols=192 Identities=15% Similarity=0.094 Sum_probs=119.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++.+|+.++..+. .+..+.++.+|++|++++.++++ .+|++|++++
T Consensus 13 Gas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~li~nAg 92 (275)
T PRK05876 13 GGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHVDVVFSNAG 92 (275)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4689999999999999999999999987653221 12357888999999999988775 3699998732
Q ss_pred ----Cch----------------------hh----hhhhcC-CCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHH
Q 028525 75 ----GFI----------------------SN----AGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDES 121 (208)
Q Consensus 75 ----~~~----------------------~~----a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~ 121 (208)
+.+ .. .+.+.+ ..+||++||...+.+..+...|...+.. .+.+..-.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~l~~ 172 (275)
T PRK05876 93 IVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNAGLGAYGVAKYGVVGLAETLAR 172 (275)
T ss_pred cCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCCCCCchHHHHHHHHHHHHHHHHH
Confidence 110 01 122333 4689999998776554444556553321 11211112
Q ss_pred HHHhcCCCEEEEeccccccCCCCcc----cee---------eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQ----GFQ---------FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~----~~~---------~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~ 188 (208)
.+...++++++++||.+........ ... .+........++.+|+|+.++.++.++ +.+.+. +
T Consensus 173 e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ai~~~----~~~~~~-~ 247 (275)
T PRK05876 173 EVTADGIGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLPLQDDNLGVDDIAQLTADAILAN----RLYVLP-H 247 (275)
T ss_pred HhhhcCcEEEEEEeCccccccccchhhhcCccccccccccccccccccccCCCHHHHHHHHHHHHHcC----CeEEec-C
Confidence 2344689999999998754322110 000 000011234678999999999999754 344443 4
Q ss_pred CcchhhHHHHHHHHhh
Q 028525 189 EEKVSDWKKCFSRLME 204 (208)
Q Consensus 189 ~~~~~e~~~~~~~~~~ 204 (208)
.....++.+.+.++..
T Consensus 248 ~~~~~~~~~~~~~~~~ 263 (275)
T PRK05876 248 AASRASIRRRFERIDR 263 (275)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4444556666555543
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.5e-13 Score=102.45 Aligned_cols=163 Identities=15% Similarity=0.062 Sum_probs=108.3
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCchh-hh----hh---cCCceEEEEcCCCCHHHHHHHhc------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKRN-AM----ES---FGTYVESMAGDASNKKFLKTALR------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~-~~----~~---~~~~v~~v~~Dl~d~~~l~~~~~------~~d~vi~~ 72 (208)
+++|.||++++++|+++| ++|++++|+.++ .. +. ...+++++.+|+.|.+++.+.++ +.|++|++
T Consensus 15 Gas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g~id~li~~ 94 (253)
T PRK07904 15 GGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGGDVDVAIVA 94 (253)
T ss_pred cCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcCCCCEEEEe
Confidence 468999999999999995 999999998765 21 11 12368899999999888665543 58999866
Q ss_pred CC--Cc----------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 73 SE--GF----------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 73 ~~--~~----------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
.+ +. +...+.+.+..+||++||.....+..+...|..+++.. +.+...
T Consensus 95 ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~~~~~~~~Y~~sKaa~~~~~~~l~ 174 (253)
T PRK07904 95 FGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGERVRRSNFVYGSTKAGLDGFYLGLG 174 (253)
T ss_pred eecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 21 00 11234556778999999986544333334455543211 112233
Q ss_pred HHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
..++..++++++++||.+....... . . .....++.+|+|+.++..+.++.
T Consensus 175 ~el~~~~i~v~~v~Pg~v~t~~~~~--~--~---~~~~~~~~~~~A~~i~~~~~~~~ 224 (253)
T PRK07904 175 EALREYGVRVLVVRPGQVRTRMSAH--A--K---EAPLTVDKEDVAKLAVTAVAKGK 224 (253)
T ss_pred HHHhhcCCEEEEEeeCceecchhcc--C--C---CCCCCCCHHHHHHHHHHHHHcCC
Confidence 4466689999999999986532211 1 0 11235789999999999998654
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-13 Score=102.50 Aligned_cols=180 Identities=13% Similarity=0.104 Sum_probs=110.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-hh------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-AM------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+.+|+||++++++|+++|++|++++|+.++ .. ...+.++.++.+|++|++++.++++ ++|+||+++
T Consensus 13 GasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~a 92 (248)
T PRK07806 13 GSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGGLDALVLNA 92 (248)
T ss_pred CCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 468999999999999999999999997543 11 1113457889999999999887775 579999773
Q ss_pred CCc--------------------hhhhhhhc--CCCeEEEeceeeec-cCC-CCcccccchh-HHHhHHHHHHHHH----
Q 028525 74 EGF--------------------ISNAGSLK--GVQHVILLSQLSVY-RGS-GGIQALMKGN-ARKLAEQDESMLM---- 124 (208)
Q Consensus 74 ~~~--------------------~~~a~~~~--gv~~~v~~Ss~~~~-~~~-~~~~~~~~~~-~~~~~~~~e~~l~---- 124 (208)
+.. +.+++... ...+||++||.... .+. .+...+..+. .|.. +|.+++
T Consensus 93 g~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~~~~Y~~sK~a---~e~~~~~l~~ 169 (248)
T PRK07806 93 SGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPTVKTMPEYEPVARSKRA---GEDALRALRP 169 (248)
T ss_pred CCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCccccCCccccHHHHHHHH---HHHHHHHHHH
Confidence 210 11222221 22489999986543 111 1111122211 2222 233332
Q ss_pred ---hcCCCEEEEeccccccCCCCc---ccee--eec-CCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCc
Q 028525 125 ---ASGIPYTIIRTGVLQNTPGGK---QGFQ--FEE-GCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEE 190 (208)
Q Consensus 125 ---~~~~~~tivRp~~~~~~~~~~---~~~~--~~~-~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~ 190 (208)
..++++++++|+.+....... .... ... ......+++.+|+|++++.+++.+...+++|++.+++.
T Consensus 170 ~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~g~~~~i~~~~~ 244 (248)
T PRK07806 170 ELAEKGIGFVVVSGDMIEGTVTATLLNRLNPGAIEARREAAGKLYTVSEFAAEVARAVTAPVPSGHIEYVGGADY 244 (248)
T ss_pred HhhccCeEEEEeCCccccCchhhhhhccCCHHHHHHHHhhhcccCCHHHHHHHHHHHhhccccCccEEEecCccc
Confidence 368999999998764321110 0000 000 00113567889999999999987666789999997654
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.8e-13 Score=103.15 Aligned_cols=182 Identities=13% Similarity=0.117 Sum_probs=115.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALRG-------VRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|+++.|++++..+. .+.++.++.+|++|.+++.++++. .|++|++++
T Consensus 17 Ga~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag 96 (255)
T PRK07523 17 GSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPIDILVNNAG 96 (255)
T ss_pred CCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3589999999999999999999999987653221 123478889999999998888753 699998722
Q ss_pred ----Cc----------------------hhh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHH
Q 028525 75 ----GF----------------------ISN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESM 122 (208)
Q Consensus 75 ----~~----------------------~~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 122 (208)
+. +.+ .+.+.+.++||++||.....+..+...|...+.. .+.+.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~y~~sK~a~~~~~~~~a~e 176 (255)
T PRK07523 97 MQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALARPGIAPYTATKGAVGNLTKGMATD 176 (255)
T ss_pred CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 11 011 1233467799999998765444334445443221 111111122
Q ss_pred HHhcCCCEEEEeccccccCCCCcc---c-e--eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQ---G-F--QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGE 189 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~---~-~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~ 189 (208)
+...+++++.||||.+........ . . .+........+...+|+|.+++.++.++.. .++.+++.+|.
T Consensus 177 ~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg~ 251 (255)
T PRK07523 177 WAKHGLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRTPAGRWGKVEELVGACVFLASDASSFVNGHVLYVDGGI 251 (255)
T ss_pred hhHhCeEEEEEEECcccCchhhhhccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCcEEEECCCe
Confidence 335789999999998764321110 0 0 011111223455679999999999875432 47788887553
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=100.60 Aligned_cols=181 Identities=13% Similarity=0.114 Sum_probs=111.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCch----hhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKR----NAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSII 70 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~----~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi 70 (208)
+++|.||++++++|+++||+|+++.|... ...+ ..+..+.++.+|+.|++++.++++ ++|+||
T Consensus 13 Gasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi 92 (249)
T PRK12827 13 GGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVEEFGRLDILV 92 (249)
T ss_pred CCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 46999999999999999999999876422 2111 113467899999999999888773 579999
Q ss_pred EcCCC----c----------------------hhhhhh-----hcCCCeEEEeceeeeccCCCCcccccchhHHH--hHH
Q 028525 71 CPSEG----F----------------------ISNAGS-----LKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAE 117 (208)
Q Consensus 71 ~~~~~----~----------------------~~~a~~-----~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~ 117 (208)
++++. . +.+++. +.+.++||++||...+.+..+...|...+... +.+
T Consensus 93 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~sK~a~~~~~~ 172 (249)
T PRK12827 93 NNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGNRGQVNYAASKAGLIGLTK 172 (249)
T ss_pred ECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCCCCCchhHHHHHHHHHHHH
Confidence 87321 0 111222 45667999999987765444444555433211 111
Q ss_pred HHHHHHHhcCCCEEEEeccccccCCCCccce-e-eecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 118 QDESMLMASGIPYTIIRTGVLQNTPGGKQGF-Q-FEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 118 ~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~-~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
.....+...+++++++|||++.......... . ...........+.+|+|+++..++.+... .++.+++.+|
T Consensus 173 ~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~g 247 (249)
T PRK12827 173 TLANELAPRGITVNAVAPGAINTPMADNAAPTEHLLNPVPVQRLGEPDEVAALVAFLVSDAASYVTGQVIPVDGG 247 (249)
T ss_pred HHHHHhhhhCcEEEEEEECCcCCCcccccchHHHHHhhCCCcCCcCHHHHHHHHHHHcCcccCCccCcEEEeCCC
Confidence 1112233468999999999986543211100 0 00001112334889999999988865432 3677787654
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.5e-13 Score=100.46 Aligned_cols=192 Identities=17% Similarity=0.203 Sum_probs=130.3
Q ss_pred cccCccHHHHHHHHHhC--CCcEEEEEc-----Cchhhhhh-cCCceEEEEcCCCCHHHHHHHhc--CCCEEEEc-CCCc
Q 028525 8 KRKKMNFRMVILSLIVK--RTRIKALVK-----DKRNAMES-FGTYVESMAGDASNKKFLKTALR--GVRSIICP-SEGF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~--g~~V~~~~R-----~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~-~~~~ 76 (208)
++-|+||++.+..+... .++.+.++. +...+.+. ..++..++.+|+.|...+...+. ..|.|++. +...
T Consensus 13 gg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~vihfaa~t~ 92 (331)
T KOG0747|consen 13 GGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDTVIHFAAQTH 92 (331)
T ss_pred cCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchhhhhhhHhhhh
Confidence 35899999999999876 356555543 21112111 23578999999999998888885 46888864 2110
Q ss_pred ---------------------hhhhhhhc-CCCeEEEeceeeeccCCC------------CcccccchhHHHhHHHHHHH
Q 028525 77 ---------------------ISNAGSLK-GVQHVILLSQLSVYRGSG------------GIQALMKGNARKLAEQDESM 122 (208)
Q Consensus 77 ---------------------~~~a~~~~-gv~~~v~~Ss~~~~~~~~------------~~~~~~~~~~~~~~~~~e~~ 122 (208)
+.+++... ++++|||+||..+|+.+. |-+||.. .+. ++|.+
T Consensus 93 vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~~nPtnpyAa--sKa---AaE~~ 167 (331)
T KOG0747|consen 93 VDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASLLNPTNPYAA--SKA---AAEML 167 (331)
T ss_pred hhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccccccccccccCCCCCchHH--HHH---HHHHH
Confidence 23445555 789999999999998432 2233332 122 35655
Q ss_pred HH----hcCCCEEEEeccccccCCCC--------------ccce-eeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEE
Q 028525 123 LM----ASGIPYTIIRTGVLQNTPGG--------------KQGF-QFEEGCAANGSLSKEDAAFICVEALESIPQTGLIF 183 (208)
Q Consensus 123 l~----~~~~~~tivRp~~~~~~~~~--------------~~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~ 183 (208)
++ +++++++++|-+.++++..- +... ..+.+.+...+++++|+++++-.++++ ...|++|
T Consensus 168 v~Sy~~sy~lpvv~~R~nnVYGP~q~~~klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~~K-g~~geIY 246 (331)
T KOG0747|consen 168 VRSYGRSYGLPVVTTRMNNVYGPNQYPEKLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVLEK-GELGEIY 246 (331)
T ss_pred HHHHhhccCCcEEEEeccCccCCCcChHHHhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHHHhc-CCcccee
Confidence 54 57999999999999864211 0111 123334446789999999999999887 5568999
Q ss_pred EEeeCCc-chhhHHHHHHHHhhh
Q 028525 184 EVVNGEE-KVSDWKKCFSRLMEK 205 (208)
Q Consensus 184 ~i~~~~~-~~~e~~~~~~~~~~~ 205 (208)
||+...+ +..|+++.+.++.++
T Consensus 247 NIgtd~e~~~~~l~k~i~eli~~ 269 (331)
T KOG0747|consen 247 NIGTDDEMRVIDLAKDICELFEK 269 (331)
T ss_pred eccCcchhhHHHHHHHHHHHHHH
Confidence 9998665 888888877777665
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7e-13 Score=103.13 Aligned_cols=169 Identities=11% Similarity=0.011 Sum_probs=109.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++.+|+.++.... .+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 7 GasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~lI~~ag 86 (270)
T PRK05650 7 GAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDVIVNNAG 86 (270)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 5799999999999999999999999987653221 13468889999999998888775 5799998722
Q ss_pred ----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 75 ----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 75 ----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
+. +...+++.+..+||++||.....+......|...++.. +.+.....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sKaa~~~~~~~l~~e 166 (270)
T PRK05650 87 VASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQGPAMSSYNVAKAGVVALSETLLVE 166 (270)
T ss_pred CCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 11 01124456778999999987665444444454433211 11111122
Q ss_pred HHhcCCCEEEEeccccccCCCCccceeee------cCCcCCCcccHHHHHHHHHHHhhCC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQGFQFE------EGCAANGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~~~~~~------~~~~~~~~v~~~Dva~~~~~~l~~~ 176 (208)
+...++++++|+||.+............. ........++.+|+|+.++.+++++
T Consensus 167 ~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~i~~~l~~~ 226 (270)
T PRK05650 167 LADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGKLLEKSPITAADIADYIYQQVAKG 226 (270)
T ss_pred hcccCcEEEEEecCccccCcccccccCchhHHHHHHHHhhcCCCCHHHHHHHHHHHHhCC
Confidence 33468999999999985432211000000 0011234578999999999999864
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-12 Score=110.69 Aligned_cols=197 Identities=12% Similarity=0.128 Sum_probs=122.9
Q ss_pred cccCccHHHHHHHHHhCCC---cEEEEEcCchh------hh-hhc--------------------CCceEEEEcCCCCH-
Q 028525 8 KRKKMNFRMVILSLIVKRT---RIKALVKDKRN------AM-ESF--------------------GTYVESMAGDASNK- 56 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~---~V~~~~R~~~~------~~-~~~--------------------~~~v~~v~~Dl~d~- 56 (208)
++||++|++|++.|++.+. +|++++|..+. .. +.. ...+.++.+|++++
T Consensus 126 GaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v~GDl~d~~ 205 (605)
T PLN02503 126 GATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPVVGNVCESN 205 (605)
T ss_pred CCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEEEeeCCCcc
Confidence 4699999999999998764 68999996532 10 100 13588999999986
Q ss_pred -----HHHHHHhcCCCEEEEcCCC-----c--------------hhhhhhhc-CCCeEEEeceeeeccCCCCc---cccc
Q 028525 57 -----KFLKTALRGVRSIICPSEG-----F--------------ISNAGSLK-GVQHVILLSQLSVYRGSGGI---QALM 108 (208)
Q Consensus 57 -----~~l~~~~~~~d~vi~~~~~-----~--------------~~~a~~~~-gv~~~v~~Ss~~~~~~~~~~---~~~~ 108 (208)
+....+.+++|+|||++.. . +.++++.. ++++|||+||..+|+...+. .+|.
T Consensus 206 LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVyG~~~G~i~E~~y~ 285 (605)
T PLN02503 206 LGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFR 285 (605)
T ss_pred cCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceeecCCCCeeeeeecC
Confidence 4556666789999987221 0 23445454 57899999999887622100 0000
Q ss_pred ----------------------c--------------------------------------hhHHH-hHHHHHHHHHh--
Q 028525 109 ----------------------K--------------------------------------GNARK-LAEQDESMLMA-- 125 (208)
Q Consensus 109 ----------------------~--------------------------------------~~~~~-~~~~~e~~l~~-- 125 (208)
. .+.+. .+..+|+.+.+
T Consensus 286 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~TK~lAE~lV~~~~ 365 (605)
T PLN02503 286 MGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVFTKAMGEMVINSMR 365 (605)
T ss_pred cccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHHHHHHHHHHHHHHhc
Confidence 0 00011 11246777765
Q ss_pred cCCCEEEEeccccccCC-------CCc------------cc---eeeecCCcCCCcccHHHHHHHHHHHhhC-C---CCC
Q 028525 126 SGIPYTIIRTGVLQNTP-------GGK------------QG---FQFEEGCAANGSLSKEDAAFICVEALES-I---PQT 179 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~-------~~~------------~~---~~~~~~~~~~~~v~~~Dva~~~~~~l~~-~---~~~ 179 (208)
.+++++|+||+.+.... ..+ .+ ..++.+......|++|.++++++.+... . ...
T Consensus 366 ~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g~G~lr~~~~~~~~~~DiVPVD~vvna~i~a~a~~~~~~~~~ 445 (605)
T PLN02503 366 GDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADPNGVLDVVPADMVVNATLAAMAKHGGAAKPE 445 (605)
T ss_pred CCCCEEEEcCCEecccccCCccccccCccccchhhhheeccceeEEEeCCCeeEeEEeecHHHHHHHHHHHhhhcccCCC
Confidence 48999999999884311 000 00 0112223345668999999998887432 1 124
Q ss_pred CcEEEEeeC--C-cchhhHHHHHHHHhh
Q 028525 180 GLIFEVVNG--E-EKVSDWKKCFSRLME 204 (208)
Q Consensus 180 ~~~~~i~~~--~-~~~~e~~~~~~~~~~ 204 (208)
+++||++++ . .+..++.+.+.+...
T Consensus 446 ~~vYn~ts~~~nP~t~~~~~~~~~~~~~ 473 (605)
T PLN02503 446 INVYQIASSVVNPLVFQDLARLLYEHYK 473 (605)
T ss_pred CCEEEeCCCCCCCeEHHHHHHHHHHHHh
Confidence 689999976 3 378888887776543
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.2e-13 Score=101.42 Aligned_cols=181 Identities=12% Similarity=0.043 Sum_probs=113.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEE-EcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKAL-VKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~-~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|+++ .|++.+.... .+.++.++.+|++|++++.++++ ++|+||+++
T Consensus 12 Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 91 (247)
T PRK05565 12 GASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKIDILVNNA 91 (247)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 569999999999999999999999 8876653211 12358899999999999888775 689999873
Q ss_pred CC----c----------------------hh----hhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHH
Q 028525 74 EG----F----------------------IS----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDES 121 (208)
Q Consensus 74 ~~----~----------------------~~----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~ 121 (208)
+. . +. ..+...+.++||++||............|...+.- .+.+....
T Consensus 92 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~~~~y~~sK~a~~~~~~~~~~ 171 (247)
T PRK05565 92 GISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGASCEVLYSASKGAVNAFTKALAK 171 (247)
T ss_pred CcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 21 0 01 11233456789999987665433333344432211 11111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCccc----eeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQG----FQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~~----~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+...+++++.+|||++......... ..+..........+.+|++++++.++.... ..++.+.+.++
T Consensus 172 ~~~~~gi~~~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~~ 244 (247)
T PRK05565 172 ELAPSGIRVNAVAPGAIDTEMWSSFSEEDKEGLAEEIPLGRLGKPEEIAKVVLFLASDDASYITGQIITVDGG 244 (247)
T ss_pred HHHHcCeEEEEEEECCccCccccccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCccCCccCcEEEecCC
Confidence 23357999999999998543221100 000011112334578999999999987654 34677777654
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-12 Score=101.40 Aligned_cols=182 Identities=12% Similarity=0.076 Sum_probs=115.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++... .....+.++.+|++|++++.++++ .+|++|++++
T Consensus 13 Gas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~~ 92 (257)
T PRK07067 13 GAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDILFNNAALFD 92 (257)
T ss_pred CCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC
Confidence 468999999999999999999999998875322 223468889999999999888775 4699998722
Q ss_pred -Cc----------------------hhhhh----hhcC-CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHH
Q 028525 75 -GF----------------------ISNAG----SLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLM 124 (208)
Q Consensus 75 -~~----------------------~~~a~----~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~ 124 (208)
+. +.+++ ...+ -.+||++||.....+..+...|..+++.. +.+.....+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~ 172 (257)
T PRK07067 93 MAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGEALVSHYCATKAAVISYTQSAALALI 172 (257)
T ss_pred CCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCCCCCchhhhhHHHHHHHHHHHHHHhc
Confidence 11 01111 1122 24799999976543333444555433211 1111112233
Q ss_pred hcCCCEEEEeccccccCCCCcc--------ce-------eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEee
Q 028525 125 ASGIPYTIIRTGVLQNTPGGKQ--------GF-------QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVN 187 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~~--------~~-------~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~ 187 (208)
..+++++.|+||.+........ .. .+....+...+.+.+|+|++++.++.++. ..+++|++.+
T Consensus 173 ~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~g 252 (257)
T PRK07067 173 RHGINVNAIAPGVVDTPMWDQVDALFARYENRPPGEKKRLVGEAVPLGRMGVPDDLTGMALFLASADADYIVAQTYNVDG 252 (257)
T ss_pred ccCeEEEEEeeCcccchhhhhhhhhhhhccCCCHHHHHHHHhhcCCCCCccCHHHHHHHHHHHhCcccccccCcEEeecC
Confidence 4789999999999864321100 00 01111223456678999999999987654 2478999886
Q ss_pred CC
Q 028525 188 GE 189 (208)
Q Consensus 188 ~~ 189 (208)
|.
T Consensus 253 g~ 254 (257)
T PRK07067 253 GN 254 (257)
T ss_pred CE
Confidence 53
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-12 Score=99.63 Aligned_cols=182 Identities=13% Similarity=0.036 Sum_probs=113.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcC-chhhhhh------cCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKD-KRNAMES------FGTYVESMAGDASNKKFLKTALRG-------VRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~-~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++..++ +....+. .+.++.++.+|+.|++++.++++. +|+||+++
T Consensus 13 G~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 92 (247)
T PRK12935 13 GGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFGKVDILVNNA 92 (247)
T ss_pred CCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 469999999999999999999876553 3322111 123588899999999999888865 69999873
Q ss_pred CC----ch----------------------hhh----hhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 EG----FI----------------------SNA----GSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~~----~~----------------------~~a----~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+. .. .++ +.+.+.++||++||........+..+|...+... +.+....
T Consensus 93 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~l~~ 172 (247)
T PRK12935 93 GITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGGFGQTNYSAAKAGMLGFTKSLAL 172 (247)
T ss_pred CCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 21 10 011 1223456899999986654333445565533211 1111111
Q ss_pred HHHhcCCCEEEEeccccccCCCCccc--e--eeecCCcCCCcccHHHHHHHHHHHhhCCC-CCCcEEEEeeCC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQG--F--QFEEGCAANGSLSKEDAAFICVEALESIP-QTGLIFEVVNGE 189 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~~--~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~i~~~~ 189 (208)
.+...++++++++||.+......... . .+........+.+.+|++++++.+++... ..++.|++.++.
T Consensus 173 ~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~edva~~~~~~~~~~~~~~g~~~~i~~g~ 245 (247)
T PRK12935 173 ELAKTNVTVNAICPGFIDTEMVAEVPEEVRQKIVAKIPKKRFGQADEIAKGVVYLCRDGAYITGQQLNINGGL 245 (247)
T ss_pred HHHHcCcEEEEEEeCCCcChhhhhccHHHHHHHHHhCCCCCCcCHHHHHHHHHHHcCcccCccCCEEEeCCCc
Confidence 12346899999999988543211100 0 01111223456789999999999886543 357899988653
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-12 Score=101.72 Aligned_cols=175 Identities=9% Similarity=0.011 Sum_probs=108.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCC-----C---c-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSE-----G---F- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~-----~---~- 76 (208)
+++|+||++|+++|+++||+|+... +|++|.+.+...++ ++|+|||+++ . .
T Consensus 16 G~tGfiG~~l~~~L~~~g~~V~~~~------------------~~~~~~~~v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~ 77 (298)
T PLN02778 16 GKTGWIGGLLGKLCQEQGIDFHYGS------------------GRLENRASLEADIDAVKPTHVFNAAGVTGRPNVDWCE 77 (298)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEec------------------CccCCHHHHHHHHHhcCCCEEEECCcccCCCCchhhh
Confidence 5799999999999999999987432 34556666766666 6899998721 1 0
Q ss_pred ----------------hhhhhhhcCCCeEEEeceeeeccC----C----------CCcccccchhHHHhHHHHHHHHHhc
Q 028525 77 ----------------ISNAGSLKGVQHVILLSQLSVYRG----S----------GGIQALMKGNARKLAEQDESMLMAS 126 (208)
Q Consensus 77 ----------------~~~a~~~~gv~~~v~~Ss~~~~~~----~----------~~~~~~~~~~~~~~~~~~e~~l~~~ 126 (208)
+.++|++.|++++ ++||.++|.. + .+..+....+. ..+..+|.++..+
T Consensus 78 ~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v-~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~~s~Yg-~sK~~~E~~~~~y 155 (298)
T PLN02778 78 SHKVETIRANVVGTLTLADVCRERGLVLT-NYATGCIFEYDDAHPLGSGIGFKEEDTPNFTGSFYS-KTKAMVEELLKNY 155 (298)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHhCCCEE-EEecceEeCCCCCCCcccCCCCCcCCCCCCCCCchH-HHHHHHHHHHHHh
Confidence 2345777888755 4555454421 0 00011101111 1122567777654
Q ss_pred CCCEEEEeccccccCC-CCcccee---e-ecC--CcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCc-chhhHHHH
Q 028525 127 GIPYTIIRTGVLQNTP-GGKQGFQ---F-EEG--CAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEE-KVSDWKKC 198 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~-~~~~~~~---~-~~~--~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~-~~~e~~~~ 198 (208)
. +..++|+.+.++.. .....+. + ... .....+++++|++++++.+++... +..||++++.. +..|+++.
T Consensus 156 ~-~~~~lr~~~~~~~~~~~~~~fi~~~~~~~~~~~~~~s~~yv~D~v~al~~~l~~~~--~g~yNigs~~~iS~~el~~~ 232 (298)
T PLN02778 156 E-NVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNL--TGIYNFTNPGVVSHNEILEM 232 (298)
T ss_pred h-ccEEeeecccCCcccccHHHHHHHHHcCCCeeEcCCCCEEHHHHHHHHHHHHhCCC--CCeEEeCCCCcccHHHHHHH
Confidence 3 56788887654422 1110110 0 000 112357899999999999986543 36999987664 99999999
Q ss_pred HHHHhhh
Q 028525 199 FSRLMEK 205 (208)
Q Consensus 199 ~~~~~~~ 205 (208)
+.++.+.
T Consensus 233 i~~~~~~ 239 (298)
T PLN02778 233 YRDYIDP 239 (298)
T ss_pred HHHHhCC
Confidence 9998874
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-12 Score=99.92 Aligned_cols=164 Identities=12% Similarity=0.077 Sum_probs=107.9
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------cCCceEEEEcCCCCHHHHHHHhcC----CCEEEEcCCC
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------FGTYVESMAGDASNKKFLKTALRG----VRSIICPSEG 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~~~~v~~v~~Dl~d~~~l~~~~~~----~d~vi~~~~~ 75 (208)
-+++|.||++++++|+++|++|++++|++++.... ...++.++.+|++|++++.++++. .|++|++++.
T Consensus 7 tGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv~~ag~ 86 (243)
T PRK07102 7 IGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVLIAVGT 86 (243)
T ss_pred EcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEEECCcC
Confidence 46799999999999999999999999988653221 124688999999999998887753 5999976321
Q ss_pred c--------------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHHH
Q 028525 76 F--------------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESML 123 (208)
Q Consensus 76 ~--------------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~l 123 (208)
. + ...+.+.+.++||++||.....+......|...++. .+.+.....+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~l~~el 166 (243)
T PRK07102 87 LGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGRASNYVYGSAKAALTAFLSGLRNRL 166 (243)
T ss_pred CCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCCCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 0 0 011334567799999988654433333345443221 1111111224
Q ss_pred HhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~ 176 (208)
...+++++.++||.+....... ... ......+.+|+|++++.+++++
T Consensus 167 ~~~gi~v~~v~pg~v~t~~~~~--~~~----~~~~~~~~~~~a~~i~~~~~~~ 213 (243)
T PRK07102 167 FKSGVHVLTVKPGFVRTPMTAG--LKL----PGPLTAQPEEVAKDIFRAIEKG 213 (243)
T ss_pred hccCcEEEEEecCcccChhhhc--cCC----CccccCCHHHHHHHHHHHHhCC
Confidence 4578999999999985432111 111 1234567899999999999865
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-12 Score=120.47 Aligned_cols=190 Identities=16% Similarity=0.175 Sum_probs=126.6
Q ss_pred cccCccHHHHHHHHHhCC----CcEEEEEcCchhhh---hh-------------cCCceEEEEcCCC------CHHHHHH
Q 028525 8 KRKKMNFRMVILSLIVKR----TRIKALVKDKRNAM---ES-------------FGTYVESMAGDAS------NKKFLKT 61 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g----~~V~~~~R~~~~~~---~~-------------~~~~v~~v~~Dl~------d~~~l~~ 61 (208)
+.||++|++++++|++++ ++|+.++|+.+... .. ...+++++.+|+. +.+.+.+
T Consensus 978 GatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl~~~~~~~ 1057 (1389)
T TIGR03443 978 GATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGLSDEKWSD 1057 (1389)
T ss_pred CCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCcCHHHHHH
Confidence 469999999999999887 88999999754311 00 1136899999997 4566777
Q ss_pred HhcCCCEEEEcCCC--c-----------------hhhhhhhcCCCeEEEeceeeeccCCC--------------Cc----
Q 028525 62 ALRGVRSIICPSEG--F-----------------ISNAGSLKGVQHVILLSQLSVYRGSG--------------GI---- 104 (208)
Q Consensus 62 ~~~~~d~vi~~~~~--~-----------------~~~a~~~~gv~~~v~~Ss~~~~~~~~--------------~~---- 104 (208)
+..++|+|||++.. . +.+++...++++|+|+||.++++... +.
T Consensus 1058 l~~~~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~~~~~~~~~~e~~ 1137 (1389)
T TIGR03443 1058 LTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDELVQAGGAGIPESD 1137 (1389)
T ss_pred HHhcCCEEEECCcEecCccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhhhhccCCCCCccc
Confidence 77889999987221 0 23456667889999999988874100 00
Q ss_pred ----------ccccchhHHHhHHHHHHHHH---hcCCCEEEEeccccccCCCCccc----e---------e---eecCCc
Q 028525 105 ----------QALMKGNARKLAEQDESMLM---ASGIPYTIIRTGVLQNTPGGKQG----F---------Q---FEEGCA 155 (208)
Q Consensus 105 ----------~~~~~~~~~~~~~~~e~~l~---~~~~~~tivRp~~~~~~~~~~~~----~---------~---~~~~~~ 155 (208)
..|.. .|. .+|.++. ..+++++++||+.+++....+.. + . +.....
T Consensus 1138 ~~~~~~~~~~~~Y~~--sK~---~aE~l~~~~~~~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~ 1212 (1389)
T TIGR03443 1138 DLMGSSKGLGTGYGQ--SKW---VAEYIIREAGKRGLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGCIQLGLIPNINN 1212 (1389)
T ss_pred ccccccccCCCChHH--HHH---HHHHHHHHHHhCCCCEEEECCCccccCCCcCCCCchhHHHHHHHHHHHhCCcCCCCC
Confidence 01211 222 3455554 35899999999999865322210 0 0 111122
Q ss_pred CCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCC-cchhhHHHHHHHH
Q 028525 156 ANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGE-EKVSDWKKCFSRL 202 (208)
Q Consensus 156 ~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~-~~~~e~~~~~~~~ 202 (208)
...+++++|++++++.++.++.. .+.+||+.++. .+..++.+.+.+.
T Consensus 1213 ~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 1262 (1389)
T TIGR03443 1213 TVNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTY 1262 (1389)
T ss_pred ccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHHh
Confidence 35678999999999999876642 34689998765 4888888887654
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=99.95 Aligned_cols=177 Identities=14% Similarity=0.089 Sum_probs=111.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---h---cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---S---FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~---~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|+++.|+.++... . ...++.++.+|++|.+++.++++ .+|+||++++
T Consensus 13 Gasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 92 (250)
T PRK07774 13 GAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGIDYLVNNAA 92 (250)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 358999999999999999999999998754311 1 12356788999999998877664 5799998732
Q ss_pred C-------c----------------------hh----hhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHH-HH
Q 028525 75 G-------F----------------------IS----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-DE 120 (208)
Q Consensus 75 ~-------~----------------------~~----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~e 120 (208)
. . +. ..+...+.++||++||..++.+ ..+|..++ ...+. ++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~---~~~Y~~sK--~a~~~~~~ 167 (250)
T PRK07774 93 IYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWLY---SNFYGLAK--VGLNGLTQ 167 (250)
T ss_pred CcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccCC---ccccHHHH--HHHHHHHH
Confidence 1 0 00 1122344579999999877642 33454432 21111 11
Q ss_pred HH---HHhcCCCEEEEeccccccCCCCcc-c--e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 121 SM---LMASGIPYTIIRTGVLQNTPGGKQ-G--F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 121 ~~---l~~~~~~~tivRp~~~~~~~~~~~-~--~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.+ +...++.+++++||.+........ . + ............+.+|+|++++.++.++. ..++.|++.++.
T Consensus 168 ~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~g~ 246 (250)
T PRK07774 168 QLARELGGMNIRVNAIAPGPIDTEATRTVTPKEFVADMVKGIPLSRMGTPEDLVGMCLFLLSDEASWITGQIFNVDGGQ 246 (250)
T ss_pred HHHHHhCccCeEEEEEecCcccCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhhCcCCCEEEECCCe
Confidence 11 223589999999998754322110 0 0 00011112234578999999999887643 357889988654
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-12 Score=99.31 Aligned_cols=181 Identities=13% Similarity=0.049 Sum_probs=113.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh---hhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA---MESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~---~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~-- 75 (208)
+++|.||++++++|+++|++|+++.|+.... .+.....+.++.+|++|++++.++++ +.|++|++++.
T Consensus 22 Gas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~ 101 (255)
T PRK06841 22 GGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDILVNSAGVAL 101 (255)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 3589999999999999999999999986542 11223356789999999998888775 46999987321
Q ss_pred --c----------------------hhh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 76 --F----------------------ISN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 76 --~----------------------~~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
. +.. .+.+.+.++||++||.....+......|...++.. +.+..-..+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~ 181 (255)
T PRK06841 102 LAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVALERHVAYCASKAGVVGMTKVLALEWGP 181 (255)
T ss_pred CCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 0 011 12334667999999986544333334454433211 11111122334
Q ss_pred cCCCEEEEeccccccCCCCcc----c-eeeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQ----G-FQFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~----~-~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
.+++++.|+||++........ . ..+........+.+.+|+|++++.++.++.. .|+.+.+.+|
T Consensus 182 ~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~i~~dgg 251 (255)
T PRK06841 182 YGITVNAISPTVVLTELGKKAWAGEKGERAKKLIPAGRFAYPEEIAAAALFLASDAAAMITGENLVIDGG 251 (255)
T ss_pred hCeEEEEEEeCcCcCcccccccchhHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEECCC
Confidence 689999999999854322110 0 0011111224466889999999999876543 4677776644
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-12 Score=100.14 Aligned_cols=183 Identities=15% Similarity=0.104 Sum_probs=114.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------cC-CceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------FG-TYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~~-~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++++|+..+.... .+ ..+.++.+|++|.+++.++++ ..|++|++
T Consensus 9 G~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~vv~~ 88 (259)
T PRK12384 9 GGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYN 88 (259)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 5799999999999999999999999986542211 11 358899999999998887764 46999987
Q ss_pred CCC----c--------------------------hhhhhhhcC-CCeEEEeceeeeccCCCCcccccchhHHH--hHHHH
Q 028525 73 SEG----F--------------------------ISNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 73 ~~~----~--------------------------~~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~ 119 (208)
++. . ....+...+ -.++|++||.....+.....+|...++.. +.+..
T Consensus 89 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sKaa~~~l~~~l 168 (259)
T PRK12384 89 AGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQSL 168 (259)
T ss_pred CCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCCCCCchhHHHHHHHHHHHHHH
Confidence 321 0 001122345 35899998865433323334555533211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCccce---------e-------eecCCcCCCcccHHHHHHHHHHHhhCCCC--CCc
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGKQGF---------Q-------FEEGCAANGSLSKEDAAFICVEALESIPQ--TGL 181 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~~~~---------~-------~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~ 181 (208)
...+...+++++.+|||.+++.+.....+ . +........+.+.+|++++++.++.+... .|+
T Consensus 169 a~e~~~~gi~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~l~~~~~~~~~G~ 248 (259)
T PRK12384 169 ALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYAKKLGIKPDEVEQYYIDKVPLKRGCDYQDVLNMLLFYASPKASYCTGQ 248 (259)
T ss_pred HHHHHHcCcEEEEEecCCcccchhhhhhhHHHHHhcCCChHHHHHHHHHhCcccCCCCHHHHHHHHHHHcCcccccccCc
Confidence 22234579999999999865433211000 0 01111224456789999999988865432 478
Q ss_pred EEEEeeCCc
Q 028525 182 IFEVVNGEE 190 (208)
Q Consensus 182 ~~~i~~~~~ 190 (208)
.|++.+|..
T Consensus 249 ~~~v~~g~~ 257 (259)
T PRK12384 249 SINVTGGQV 257 (259)
T ss_pred eEEEcCCEE
Confidence 899886643
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-12 Score=97.91 Aligned_cols=181 Identities=14% Similarity=0.142 Sum_probs=111.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCch-hhh----h--hcCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKR-NAM----E--SFGTYVESMAGDASNKKFLKTALRG-------VRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~-~~~----~--~~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~ 73 (208)
+.+|.||++++++|+++||+|++++|+.. ... . ..+..+.++.+|++|++++.+++++ +|+||+++
T Consensus 5 G~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 84 (239)
T TIGR01830 5 GASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDILVNNA 84 (239)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 56899999999999999999999998752 211 1 1123478899999999998887754 59999872
Q ss_pred CC----c----------------------hhhhh----hhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHH
Q 028525 74 EG----F----------------------ISNAG----SLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDES 121 (208)
Q Consensus 74 ~~----~----------------------~~~a~----~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~ 121 (208)
+. . +.+++ ...+.++|+++||.+......+...|...+.. .+.+....
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~~~~~y~~~k~a~~~~~~~l~~ 164 (239)
T TIGR01830 85 GITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNAGQANYAASKAGVIGFTKSLAK 164 (239)
T ss_pred CCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 21 0 01112 22456799999997654433333344442211 11111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCccc--e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQG--F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~~--~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+...++.++++|||.+......... . .+........+.+.+|++++++.++..+. ..++.|++.+|
T Consensus 165 ~~~~~g~~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 165 ELASRNITVNAVAPGFIDTDMTDKLSEKVKKKILSQIPLGRFGTPEEVANAVAFLASDEASYITGQVIHVDGG 237 (239)
T ss_pred HHhhcCeEEEEEEECCCCChhhhhcChHHHHHHHhcCCcCCCcCHHHHHHHHHHHhCcccCCcCCCEEEeCCC
Confidence 23346999999999987432211100 0 00011122445678999999998885543 36788888644
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-12 Score=105.05 Aligned_cols=188 Identities=18% Similarity=0.225 Sum_probs=135.9
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCchhh-------hhhcC-CceEEEEcCCCCHHHHHHHhcC--CCEEEEcCCC-
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKRNA-------MESFG-TYVESMAGDASNKKFLKTALRG--VRSIICPSEG- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~-------~~~~~-~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~~- 75 (208)
+++|-||+++|+++++.+ .+++.++|++-+. .+.++ ..+.++.+|+.|.+.+..++++ +|+|||++.-
T Consensus 257 GagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA~K 336 (588)
T COG1086 257 GGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVFHAAALK 336 (588)
T ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEEEhhhhc
Confidence 469999999999999987 7899999998662 11112 4678899999999999999998 8999998321
Q ss_pred ---------------------chhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHh-----c--C
Q 028525 76 ---------------------FISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMA-----S--G 127 (208)
Q Consensus 76 ---------------------~~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~-----~--~ 127 (208)
+..++|.+.||++||++||-.+.+ |.+.+.. .|.. +|.++.+ . +
T Consensus 337 HVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~---PtNvmGa--TKr~---aE~~~~a~~~~~~~~~ 408 (588)
T COG1086 337 HVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVN---PTNVMGA--TKRL---AEKLFQAANRNVSGTG 408 (588)
T ss_pred cCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccC---CchHhhH--HHHH---HHHHHHHHhhccCCCC
Confidence 135678889999999999976544 3344544 3443 3555442 2 3
Q ss_pred CCEEEEeccccccCCCC-----------ccceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCc-chhhH
Q 028525 128 IPYTIIRTGVLQNTPGG-----------KQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEE-KVSDW 195 (208)
Q Consensus 128 ~~~tivRp~~~~~~~~~-----------~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~-~~~e~ 195 (208)
-.++.+|.|.+.+..+. +.++.+..++--.=+++..|.++.++.+... ...|++|-+--|+. .+.|+
T Consensus 409 T~f~~VRFGNVlGSrGSViPlFk~QI~~GgplTvTdp~mtRyfMTI~EAv~LVlqA~a~-~~gGeifvldMGepvkI~dL 487 (588)
T COG1086 409 TRFCVVRFGNVLGSRGSVIPLFKKQIAEGGPLTVTDPDMTRFFMTIPEAVQLVLQAGAI-AKGGEIFVLDMGEPVKIIDL 487 (588)
T ss_pred cEEEEEEecceecCCCCCHHHHHHHHHcCCCccccCCCceeEEEEHHHHHHHHHHHHhh-cCCCcEEEEcCCCCeEHHHH
Confidence 77999999999875432 2223332222223356779999988888764 34578888877664 99999
Q ss_pred HHHHHHHhh
Q 028525 196 KKCFSRLME 204 (208)
Q Consensus 196 ~~~~~~~~~ 204 (208)
++.+.+++|
T Consensus 488 Ak~mi~l~g 496 (588)
T COG1086 488 AKAMIELAG 496 (588)
T ss_pred HHHHHHHhC
Confidence 999999887
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-12 Score=99.50 Aligned_cols=172 Identities=11% Similarity=0.109 Sum_probs=109.4
Q ss_pred hhccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEE
Q 028525 5 KKMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIIC 71 (208)
Q Consensus 5 ~~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~ 71 (208)
...+++|.||+++++.|+++|++|++++|+..+.... .+.++.++.+|+.|++++.++++ +.|+||+
T Consensus 5 lVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~ 84 (263)
T PRK06181 5 IITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGIDILVN 84 (263)
T ss_pred EEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3346799999999999999999999999987653211 23468889999999999888775 5799998
Q ss_pred cCCC----c---h--------------------hhhhh---hcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHH
Q 028525 72 PSEG----F---I--------------------SNAGS---LKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 72 ~~~~----~---~--------------------~~a~~---~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~ 119 (208)
+++. . . .+.+. ..+.+++|++||...+.+..+...|...+.-. +.+..
T Consensus 85 ~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~~~~~~~~~l 164 (263)
T PRK06181 85 NAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGVPTRSGYAASKHALHGFFDSL 164 (263)
T ss_pred CCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCCCCccHHHHHHHHHHHHHHHH
Confidence 7321 0 0 01111 12346899999987765444444554432211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCc----cceee-ecCCcCCCcccHHHHHHHHHHHhhCC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGK----QGFQF-EEGCAANGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~----~~~~~-~~~~~~~~~v~~~Dva~~~~~~l~~~ 176 (208)
...+...+++++.++||++....... ..... ..+.....+++.+|+|++++.+++..
T Consensus 165 ~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~~~~~~ 226 (263)
T PRK06181 165 RIELADDGVAVTVVCPGFVATDIRKRALDGDGKPLGKSPMQESKIMSAEECAEAILPAIARR 226 (263)
T ss_pred HHHhhhcCceEEEEecCccccCcchhhccccccccccccccccCCCCHHHHHHHHHHHhhCC
Confidence 12233468999999999986432211 00111 11112236789999999999999753
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-12 Score=96.70 Aligned_cols=175 Identities=13% Similarity=0.044 Sum_probs=110.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc------CCCEEEEcCCC----c-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR------GVRSIICPSEG----F- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~------~~d~vi~~~~~----~- 76 (208)
+++|.||++++++|+++|++|+++.|+.++. . ..+++.+|++|.+++.++++ ++|++|++++. .
T Consensus 10 G~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~---~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~ 84 (234)
T PRK07577 10 GATKGIGLALSLRLANLGHQVIGIARSAIDD---F--PGELFACDLADIEQTAATLAQINEIHPVDAIVNNVGIALPQPL 84 (234)
T ss_pred CCCCcHHHHHHHHHHHCCCEEEEEeCCcccc---c--CceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEECCCCCCCCCh
Confidence 5799999999999999999999999987651 1 13678999999998888775 57999987221 0
Q ss_pred -------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCCC
Q 028525 77 -------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGIP 129 (208)
Q Consensus 77 -------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~~ 129 (208)
....+++.+.++||++||...++. ....+|...+... +.+.....+...+++
T Consensus 85 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~ 163 (234)
T PRK07577 85 GKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGA-LDRTSYSAAKSALVGCTRTWALELAEYGIT 163 (234)
T ss_pred HHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCC-CCchHHHHHHHHHHHHHHHHHHHHHhhCcE
Confidence 012344567789999999876532 2234454433211 111111233456999
Q ss_pred EEEEeccccccCCCCcc-cee------eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 130 YTIIRTGVLQNTPGGKQ-GFQ------FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 130 ~tivRp~~~~~~~~~~~-~~~------~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
++.||||.+........ ... .............+|+|.+++.++..+. ..++.+.+.++
T Consensus 164 v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~g~ 231 (234)
T PRK07577 164 VNAVAPGPIETELFRQTRPVGSEEEKRVLASIPMRRLGTPEEVAAAIAFLLSDDAGFITGQVLGVDGG 231 (234)
T ss_pred EEEEecCcccCcccccccccchhHHHHHhhcCCCCCCcCHHHHHHHHHHHhCcccCCccceEEEecCC
Confidence 99999999864321110 000 0000111223467999999999987653 34677776643
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=101.00 Aligned_cols=171 Identities=16% Similarity=0.073 Sum_probs=109.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--------CCCEEEEcCC----C
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--------GVRSIICPSE----G 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--------~~d~vi~~~~----~ 75 (208)
+.+|.||+++++.|+++|++|+++.|+.++.......+++.+.+|+.|.+++.++++ ..|.+|++++ .
T Consensus 9 Gasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~ag~~~~~ 88 (256)
T PRK08017 9 GCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNNAGFGVYG 88 (256)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCcc
Confidence 568999999999999999999999999876543333467889999999888766553 3477787622 1
Q ss_pred c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcC
Q 028525 76 F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASG 127 (208)
Q Consensus 76 ~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~ 127 (208)
. ..+.+.+.+.+++|++||.....+.....+|...+... +.+....++...+
T Consensus 89 ~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~ 168 (256)
T PRK08017 89 PLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHSG 168 (256)
T ss_pred chhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcccccCCCCccHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 0 12234456778999999976554433344454432211 1111112344578
Q ss_pred CCEEEEeccccccCCCCc----c-ceee-ecCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 128 IPYTIIRTGVLQNTPGGK----Q-GFQF-EEGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 128 ~~~tivRp~~~~~~~~~~----~-~~~~-~~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
++++++|||.+....... . ...+ ..+.....+++.+|+++++..+++++..
T Consensus 169 i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~ 225 (256)
T PRK08017 169 IKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARFTLGPEAVVPKLRHALESPKP 225 (256)
T ss_pred CEEEEEeCCCcccchhhcccchhhccchhhhHHHhhcCCCHHHHHHHHHHHHhCCCC
Confidence 999999999875332111 0 0000 0111113458899999999999987664
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-12 Score=97.99 Aligned_cols=159 Identities=13% Similarity=0.125 Sum_probs=107.8
Q ss_pred cccCccHHHHHHHHHhCCC-cEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC---CCEEEEcCCC-c------
Q 028525 8 KRKKMNFRMVILSLIVKRT-RIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG---VRSIICPSEG-F------ 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~---~d~vi~~~~~-~------ 76 (208)
+++|.||++++++|+++|+ +|++++|+.++..+ .+.++.++.+|+.|.+++.++++. +|+||++.+. .
T Consensus 13 Ggsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~ 91 (238)
T PRK08264 13 GANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-LGPRVVPLQLDVTDPASVAAAAEAASDVTILVNNAGIFRTGSLLL 91 (238)
T ss_pred CCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-cCCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCCcCCCCCccc
Confidence 4699999999999999998 99999999877543 345789999999999999888864 6999987321 0
Q ss_pred --------------------hhh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHHh--HHHHHHHHHhcCCCE
Q 028525 77 --------------------ISN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKL--AEQDESMLMASGIPY 130 (208)
Q Consensus 77 --------------------~~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~--~~~~e~~l~~~~~~~ 130 (208)
+.+ .+...+.++||++||...+.+..+...|...+.... .+.....+...++++
T Consensus 92 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~ 171 (238)
T PRK08264 92 EGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNFPNLGTYSASKAAAWSLTQALRAELAPQGTRV 171 (238)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 001 123356778999999876654444445544322111 111112223468999
Q ss_pred EEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCC
Q 028525 131 TIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 131 tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~ 176 (208)
+++||+.+.... ... . ....++.+|++..++..+...
T Consensus 172 ~~v~pg~v~t~~-~~~-~-------~~~~~~~~~~a~~~~~~~~~~ 208 (238)
T PRK08264 172 LGVHPGPIDTDM-AAG-L-------DAPKASPADVARQILDALEAG 208 (238)
T ss_pred EEEeCCcccccc-ccc-C-------CcCCCCHHHHHHHHHHHHhCC
Confidence 999999874322 111 0 112577899999999888754
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-13 Score=94.95 Aligned_cols=127 Identities=18% Similarity=0.208 Sum_probs=96.0
Q ss_pred ccccCccHHHHHHHHHhCC--CcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC---------C
Q 028525 7 MKRKKMNFRMVILSLIVKR--TRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE---------G 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~---------~ 75 (208)
.+.||.+|+.+++++++++ .+|+++.|+..... ...+.+..+..|.+..+++...++|.|+.|+|.+ +
T Consensus 24 lGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~-at~k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgTTRgkaGadg 102 (238)
T KOG4039|consen 24 LGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDP-ATDKVVAQVEVDFSKLSQLATNEQGPDVLFCALGTTRGKAGADG 102 (238)
T ss_pred EeccccccHHHHHHHHhcccceeEEEEEeccCCCc-cccceeeeEEechHHHHHHHhhhcCCceEEEeecccccccccCc
Confidence 3569999999999999987 68999998853221 1235688889999999999999999999998821 1
Q ss_pred c----------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCC-EEEEeccccccC
Q 028525 76 F----------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIP-YTIIRTGVLQNT 141 (208)
Q Consensus 76 ~----------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~-~tivRp~~~~~~ 141 (208)
+ ..+++++.|+++|+.+||.++...+.. .|+. .+- +.|+-+.+-+|+ ++|+|||.+...
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrF--lY~k--~KG---EvE~~v~eL~F~~~~i~RPG~ll~~ 172 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRF--LYMK--MKG---EVERDVIELDFKHIIILRPGPLLGE 172 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccce--eeee--ccc---hhhhhhhhccccEEEEecCcceecc
Confidence 1 346788899999999999998764432 3332 221 346667777776 999999998754
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.7e-12 Score=96.71 Aligned_cols=182 Identities=13% Similarity=0.064 Sum_probs=113.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-hh---h---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-AM---E---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~---~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|+... .. + ....++.++.+|++|++++.++++ .+|++|++.
T Consensus 9 G~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 88 (256)
T PRK12745 9 GGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRIDCLVNNA 88 (256)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 579999999999999999999999987542 11 1 123468899999999998877664 569999872
Q ss_pred CC------ch----------------------hhh----hhhc-C-----CCeEEEeceeeeccCCCCcccccchhHHH-
Q 028525 74 EG------FI----------------------SNA----GSLK-G-----VQHVILLSQLSVYRGSGGIQALMKGNARK- 114 (208)
Q Consensus 74 ~~------~~----------------------~~a----~~~~-g-----v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~- 114 (208)
+. .+ .++ +.+. + +++||++||.....+..+...|...++..
T Consensus 89 g~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~ 168 (256)
T PRK12745 89 GVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSPNRGEYCISKAGLS 168 (256)
T ss_pred ccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCCCCCcccHHHHHHHH
Confidence 21 00 011 1111 1 56899999987765444455665533211
Q ss_pred -hHHHHHHHHHhcCCCEEEEeccccccCCCCcc--ce--eeecC-CcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEe
Q 028525 115 -LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQ--GF--QFEEG-CAANGSLSKEDAAFICVEALESIP--QTGLIFEVV 186 (208)
Q Consensus 115 -~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~--~~--~~~~~-~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~ 186 (208)
+.+.....+...+++++++|||.+........ .. .+... .....+.+.+|+++++..++.... ..++.|++.
T Consensus 169 ~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~ 248 (256)
T PRK12745 169 MAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVTAKYDALIAKGLVPMPRWGEPEDVARAVAALASGDLPYSTGQAIHVD 248 (256)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCcCccccccchhHHhhhhhcCCCcCCCcCHHHHHHHHHHHhCCcccccCCCEEEEC
Confidence 11111222335789999999998865322110 00 00000 111335578999999998876443 347889987
Q ss_pred eCC
Q 028525 187 NGE 189 (208)
Q Consensus 187 ~~~ 189 (208)
++.
T Consensus 249 gg~ 251 (256)
T PRK12745 249 GGL 251 (256)
T ss_pred CCe
Confidence 654
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.4e-12 Score=102.30 Aligned_cols=176 Identities=10% Similarity=0.007 Sum_probs=110.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.++++ .+|++|++++
T Consensus 15 Gas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD~lInnAg 94 (334)
T PRK07109 15 GASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPIDTWVNNAM 94 (334)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence 3589999999999999999999999987653221 23467889999999999988764 5799998732
Q ss_pred ----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHH
Q 028525 75 ----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESM 122 (208)
Q Consensus 75 ----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 122 (208)
+. ....+.+.+..+||++||...+.+......|..++.. .+.+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~asK~a~~~~~~~l~~e 174 (334)
T PRK07109 95 VTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSIPLQSAYCAAKHAIRGFTDSLRCE 174 (334)
T ss_pred cCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 11 0122344556789999999877654444455543321 111111111
Q ss_pred HH--hcCCCEEEEeccccccCCCCccceeeecCC-cCCCcccHHHHHHHHHHHhhCCCCCCcEEEEe
Q 028525 123 LM--ASGIPYTIIRTGVLQNTPGGKQGFQFEEGC-AANGSLSKEDAAFICVEALESIPQTGLIFEVV 186 (208)
Q Consensus 123 l~--~~~~~~tivRp~~~~~~~~~~~~~~~~~~~-~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~ 186 (208)
+. ..+++++.|+||.+.........-.+.... ......+.+|+|++++.++.++. +.+.+.
T Consensus 175 l~~~~~~I~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~pe~vA~~i~~~~~~~~---~~~~vg 238 (334)
T PRK07109 175 LLHDGSPVSVTMVQPPAVNTPQFDWARSRLPVEPQPVPPIYQPEVVADAILYAAEHPR---RELWVG 238 (334)
T ss_pred HhhcCCCeEEEEEeCCCccCchhhhhhhhccccccCCCCCCCHHHHHHHHHHHHhCCC---cEEEeC
Confidence 22 247999999999874321110000011111 11234578999999999998762 345554
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-12 Score=98.07 Aligned_cols=178 Identities=10% Similarity=0.006 Sum_probs=112.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcCCC----c
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG-------VRSIICPSEG----F 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~~~----~ 76 (208)
+++|.||++++++|+++|++|++++|+.. ...+.++.++++|+.|++++.++++. .|++|++.+. .
T Consensus 15 Gas~~iG~~la~~l~~~G~~v~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~ 91 (252)
T PRK08220 15 GAAQGIGYAVALAFVEAGAKVIGFDQAFL---TQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVLVNAAGILRMGA 91 (252)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEecchh---hhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCC
Confidence 35899999999999999999999999861 12234688999999999999988754 6999987221 0
Q ss_pred ----------------------hhh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCC
Q 028525 77 ----------------------ISN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGI 128 (208)
Q Consensus 77 ----------------------~~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~ 128 (208)
+.+ .+.+.+..+||++||.....+..+...|..++... +.+.....+...++
T Consensus 92 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i 171 (252)
T PRK08220 92 TDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVPRIGMAAYGASKAALTSLAKCVGLELAPYGV 171 (252)
T ss_pred cccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCCCchhHHHHHHHHHHHHHHHHHhhHhCe
Confidence 011 12334556899999987654444445555533211 11111222334789
Q ss_pred CEEEEeccccccCCCCc----c---c-ee------eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 129 PYTIIRTGVLQNTPGGK----Q---G-FQ------FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~~----~---~-~~------~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
++++++||.+....... . . .. +..........+.+|+|++++.++.+.. ..++.+.+.+|
T Consensus 172 ~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~i~~~gg 247 (252)
T PRK08220 172 RCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKLGIPLGKIARPQEIANAVLFLASDLASHITLQDIVVDGG 247 (252)
T ss_pred EEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhhcCCCcccCCHHHHHHHHHHHhcchhcCccCcEEEECCC
Confidence 99999999885432110 0 0 00 0001112345678999999999886543 23566666544
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-12 Score=100.83 Aligned_cols=170 Identities=14% Similarity=-0.046 Sum_probs=106.4
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh----cCCceEEEEcCCCCHHHHHHHhc--------CCCEEEEcCC
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES----FGTYVESMAGDASNKKFLKTALR--------GVRSIICPSE 74 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~----~~~~v~~v~~Dl~d~~~l~~~~~--------~~d~vi~~~~ 74 (208)
-+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|.+++.++++ .+|+||++++
T Consensus 7 tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi~~ag 86 (260)
T PRK08267 7 TGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVLFNNAG 86 (260)
T ss_pred eCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEEECCC
Confidence 36799999999999999999999999988764322 13468999999999998888765 3599998732
Q ss_pred C----c----------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 75 G----F----------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 75 ~----~----------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
. . . ...++..+..+||++||.....+......|..+++.. +.+.....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sKaa~~~~~~~l~~~ 166 (260)
T PRK08267 87 ILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQPGLAVYSATKFAVRGLTEALDLE 166 (260)
T ss_pred CCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 1 0 0 1112345567899999875543333334454432211 11111111
Q ss_pred HHhcCCCEEEEeccccccCCCCc--cceeeecCCcCCCcccHHHHHHHHHHHhhCC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGK--QGFQFEEGCAANGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~--~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~ 176 (208)
+...+++++.++||++....... ..............+..+|+|.+++.+++++
T Consensus 167 ~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~~~~ 222 (260)
T PRK08267 167 WRRHGIRVADVMPLFVDTAMLDGTSNEVDAGSTKRLGVRLTPEDVAEAVWAAVQHP 222 (260)
T ss_pred hcccCcEEEEEecCCcCCcccccccchhhhhhHhhccCCCCHHHHHHHHHHHHhCC
Confidence 23468999999999985432211 0000000011123466799999999998654
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.7e-12 Score=98.44 Aligned_cols=181 Identities=9% Similarity=-0.015 Sum_probs=112.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh--------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES--------FGTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~--------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.++++ .+|++|++
T Consensus 14 Gas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ 93 (260)
T PRK07063 14 GAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFGPLDVLVNN 93 (260)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhCCCcEEEEC
Confidence 4689999999999999999999999987653221 13357889999999999888875 57999987
Q ss_pred CC----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 73 SE----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 73 ~~----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
++ +.. ...+.+.+..+||++||........+..+|...++-. +.+...
T Consensus 94 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaa~~~~~~~la 173 (260)
T PRK07063 94 AGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKIIPGCFPYPVAKHGLLGLTRALG 173 (260)
T ss_pred CCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCCCCchHHHHHHHHHHHHHHHHH
Confidence 32 100 0112334556899999987665444444555433211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc------ce-e---eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ------GF-Q---FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~------~~-~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..+...+++++.|+||++........ .. . .............+|+|.+++.++.++. ..|+.+.+.+|
T Consensus 174 ~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~va~~~~fl~s~~~~~itG~~i~vdgg 253 (260)
T PRK07063 174 IEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQPMKRIGRPEEVAMTAVFLASDEAPFINATCITIDGG 253 (260)
T ss_pred HHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccccCCcEEEECCC
Confidence 12334689999999998753321100 00 0 0000111223467999999999887644 24666666544
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-12 Score=98.10 Aligned_cols=164 Identities=11% Similarity=0.044 Sum_probs=107.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cC--CceEEEEcCCCCHHHHHHHhcC-------CCEEEEcCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FG--TYVESMAGDASNKKFLKTALRG-------VRSIICPSE- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~--~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~~- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .. .++.++.+|++|++++.++++. .|++|++++
T Consensus 9 Gas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 9 GASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred cCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 5699999999999999999999999987664321 11 1588999999999999887653 699998722
Q ss_pred ---C-----c----------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 75 ---G-----F----------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 75 ---~-----~----------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
. . +...+.+.+..+||++||.....+......|...+... +.+.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~l~~e 168 (257)
T PRK07024 89 SVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGLPGAGAYSASKAAAIKYLESLRVE 168 (257)
T ss_pred CCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 0 0 01134456667999999876654333334454433211 11111122
Q ss_pred HHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
++..+++++.+|||.+......... . .....++.+|+|+.++.++.+..
T Consensus 169 ~~~~gi~v~~v~Pg~v~t~~~~~~~--~----~~~~~~~~~~~a~~~~~~l~~~~ 217 (257)
T PRK07024 169 LRPAGVRVVTIAPGYIRTPMTAHNP--Y----PMPFLMDADRFAARAARAIARGR 217 (257)
T ss_pred hhccCcEEEEEecCCCcCchhhcCC--C----CCCCccCHHHHHHHHHHHHhCCC
Confidence 3457999999999998543211110 1 11224688999999999997643
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.2e-12 Score=96.26 Aligned_cols=180 Identities=13% Similarity=0.071 Sum_probs=113.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-hh----hh--cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-AM----ES--FGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~----~~--~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|+||++++++|+++|++|++..|+... .. .. .+.++..+.+|++|++++..+++ ++|+||+++
T Consensus 13 Gasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~a 92 (252)
T PRK06077 13 GSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGVADILVNNA 92 (252)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 469999999999999999999888765322 11 11 12356788999999998887765 569999873
Q ss_pred CC----ch----------------------hhhhhh--cCCCeEEEeceeeeccCCCCcccccchhHHHhHH-HHHHHHH
Q 028525 74 EG----FI----------------------SNAGSL--KGVQHVILLSQLSVYRGSGGIQALMKGNARKLAE-QDESMLM 124 (208)
Q Consensus 74 ~~----~~----------------------~~a~~~--~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~-~~e~~l~ 124 (208)
+. .. .+++.. ...++||++||...+.+..+...|...++ ..+ .++.+.+
T Consensus 93 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~--~~~~~~~~l~~ 170 (252)
T PRK06077 93 GLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRPAYGLSIYGAMKA--AVINLTKYLAL 170 (252)
T ss_pred CCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCCCCCchHHHHHHH--HHHHHHHHHHH
Confidence 21 00 011111 12258999999887765544555655332 111 1222222
Q ss_pred h--cCCCEEEEeccccccCCCCcc--ceee-----e-cCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC
Q 028525 125 A--SGIPYTIIRTGVLQNTPGGKQ--GFQF-----E-EGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE 189 (208)
Q Consensus 125 ~--~~~~~tivRp~~~~~~~~~~~--~~~~-----~-~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~ 189 (208)
+ .++.+.+++||++........ .... . .......+++.+|+|++++.+++.+...++.|++.+|.
T Consensus 171 ~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~g~~~~i~~g~ 245 (252)
T PRK06077 171 ELAPKIRVNAIAPGFVKTKLGESLFKVLGMSEKEFAEKFTLMGKILDPEEVAEFVAAILKIESITGQVFVLDSGE 245 (252)
T ss_pred HHhcCCEEEEEeeCCccChHHHhhhhcccccHHHHHHhcCcCCCCCCHHHHHHHHHHHhCccccCCCeEEecCCe
Confidence 2 378999999998854321110 0000 0 00112356889999999999998666678899998764
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-12 Score=97.86 Aligned_cols=188 Identities=12% Similarity=0.056 Sum_probs=117.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh---hh--hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA---ME--SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~---~~--~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~ 75 (208)
+++|.||++++++|+++|++|++++|++++. .+ ..+.++.++.+|++|++++.++++ ++|+||++++.
T Consensus 14 GasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 14 GGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRIDGLVNNAGV 93 (258)
T ss_pred CCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 3589999999999999999999999987653 11 123468899999999999988875 47999988331
Q ss_pred ----c---------------------hhhhhh---hcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 76 ----F---------------------ISNAGS---LKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 76 ----~---------------------~~~a~~---~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
. ....+. +.+.++|+++||.....+..+...|...++.. +.+.....+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~ 173 (258)
T PRK08628 94 NDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQGGTSGYAAAKGAQLALTREWAVALAK 173 (258)
T ss_pred cCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccCCCCCchhHHHHHHHHHHHHHHHHHHhh
Confidence 0 001110 12346899999987665443444555433211 11111222345
Q ss_pred cCCCEEEEeccccccCCCCcc--cee-----e----ecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCcch
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQ--GFQ-----F----EEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEEKV 192 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~--~~~-----~----~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~~~ 192 (208)
.+++++.|+||.+........ ... . .........++.+|+|++++.++..+. ..++.+.+.++....
T Consensus 174 ~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~~~~ 253 (258)
T PRK08628 174 DGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKIPLGHRMTTAEEIADTAVFLLSERSSHTTGQWLFVDGGYVHL 253 (258)
T ss_pred cCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcCCccccCCCHHHHHHHHHHHhChhhccccCceEEecCCcccc
Confidence 689999999998854321100 000 0 000111245678999999999987653 346777776554455
Q ss_pred hhH
Q 028525 193 SDW 195 (208)
Q Consensus 193 ~e~ 195 (208)
+++
T Consensus 254 ~~~ 256 (258)
T PRK08628 254 DRA 256 (258)
T ss_pred ccc
Confidence 443
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.7e-12 Score=97.20 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=111.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh---hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM---ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~---~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~-- 75 (208)
+++|.||++++++|+++|++|++++|+.++.. ...+..+.++.+|++|.+++.++++ .+|++|++++.
T Consensus 13 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~~ag~~~ 92 (261)
T PRK08265 13 GGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDILVNLACTYL 92 (261)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 35899999999999999999999999876532 2224468899999999998888775 46999987321
Q ss_pred ---c--------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhc
Q 028525 76 ---F--------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMAS 126 (208)
Q Consensus 76 ---~--------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~ 126 (208)
. . ...+. .+-.+||++||.....+......|...++-. +.+.....+...
T Consensus 93 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~g~ii~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~ 171 (261)
T PRK08265 93 DDGLASSRADWLAALDVNLVSAAMLAQAAHPHLA-RGGGAIVNFTSISAKFAQTGRWLYPASKAAIRQLTRSMAMDLAPD 171 (261)
T ss_pred CCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHh-cCCcEEEEECchhhccCCCCCchhHHHHHHHHHHHHHHHHHhccc
Confidence 0 0 01122 3345899999876554333344555433211 111111223346
Q ss_pred CCCEEEEeccccccCCCCc----ccee---eecC-CcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 127 GIPYTIIRTGVLQNTPGGK----QGFQ---FEEG-CAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~~~~----~~~~---~~~~-~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+++++.|+||++....... .... +... .......+.+|+|.++..++.++. ..++.+.+.+|
T Consensus 172 gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~~l~s~~~~~~tG~~i~vdgg 243 (261)
T PRK08265 172 GIRVNSVSPGWTWSRVMDELSGGDRAKADRVAAPFHLLGRVGDPEEVAQVVAFLCSDAASFVTGADYAVDGG 243 (261)
T ss_pred CEEEEEEccCCccChhhhhhcccchhHHHHhhcccCCCCCccCHHHHHHHHHHHcCccccCccCcEEEECCC
Confidence 8999999999874322110 0000 0000 111223467999999999987543 24677777654
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-11 Score=94.92 Aligned_cols=182 Identities=12% Similarity=0.093 Sum_probs=112.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|+.|+...|+.++..+ ..+.++.++.+|++|.+++.++++ ++|+||++++
T Consensus 13 Ga~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~ 92 (245)
T PRK12936 13 GASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDILVNNAGITK 92 (245)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 359999999999999999999888888765432 223468889999999999887753 4799998732
Q ss_pred -Cc----------------------hhhh----hhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHHHHHh
Q 028525 75 -GF----------------------ISNA----GSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDESMLMA 125 (208)
Q Consensus 75 -~~----------------------~~~a----~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~~l~~ 125 (208)
+. +.++ +.+.+.++||++||............|...++ ..+.+.....+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sk~a~~~~~~~la~~~~~ 172 (245)
T PRK12936 93 DGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNPGQANYCASKAGMIGFSKSLAQEIAT 172 (245)
T ss_pred CCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCCCCCcchHHHHHHHHHHHHHHHHHhhH
Confidence 10 0111 22345678999999765433323334544332 1111111122345
Q ss_pred cCCCEEEEeccccccCCCCcc-cee---eecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQ-GFQ---FEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGE 189 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~-~~~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~ 189 (208)
.+++++.++||++........ ... +..........+.+|++.++..++..+.. .|+.+++.+|.
T Consensus 173 ~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~l~~~~~~~~~G~~~~~~~g~ 242 (245)
T PRK12936 173 RNVTVNCVAPGFIESAMTGKLNDKQKEAIMGAIPMKRMGTGAEVASAVAYLASSEAAYVTGQTIHVNGGM 242 (245)
T ss_pred hCeEEEEEEECcCcCchhcccChHHHHHHhcCCCCCCCcCHHHHHHHHHHHcCccccCcCCCEEEECCCc
Confidence 689999999998743221110 000 00001112344679999999888865432 47888887654
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.5e-12 Score=96.21 Aligned_cols=181 Identities=11% Similarity=0.065 Sum_probs=114.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALRG-------VRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|+++.|++++... ..+.++.++.+|++|++++.+++++ .|++|++.+
T Consensus 18 Gas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 97 (256)
T PRK06124 18 GSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGRLDILVNNVG 97 (256)
T ss_pred CCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 358999999999999999999999998765321 1234588999999999998887753 489998722
Q ss_pred C----ch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHH
Q 028525 75 G----FI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESM 122 (208)
Q Consensus 75 ~----~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 122 (208)
. .. ...+...+.++||++||............|...+.. .+.+.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e 177 (256)
T PRK06124 98 ARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVARAGDAVYPAAKQGLTGLMRALAAE 177 (256)
T ss_pred CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCCCCccHhHHHHHHHHHHHHHHHHH
Confidence 1 10 122334567899999998765433333445443221 111111122
Q ss_pred HHhcCCCEEEEeccccccCCCCcc----ce--eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQ----GF--QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~----~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
+...+++++.|+||.+........ .. .+........+++.+|++.+++.++.++.. .|+.+.+.+|
T Consensus 178 ~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~i~~dgg 251 (256)
T PRK06124 178 FGPHGITSNAIAPGYFATETNAAMAADPAVGPWLAQRTPLGRWGRPEEIAGAAVFLASPAASYVNGHVLAVDGG 251 (256)
T ss_pred HHHhCcEEEEEEECCccCcchhhhccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccCCcCCCEEEECCC
Confidence 334689999999998864321110 00 010111224567889999999999876543 3666665533
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.7e-12 Score=93.05 Aligned_cols=172 Identities=13% Similarity=0.082 Sum_probs=115.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cC-CceEEEEcCCCCHHHHHHHh-------cCCCEEEEcCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FG-TYVESMAGDASNKKFLKTAL-------RGVRSIICPSE-- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~-~~v~~v~~Dl~d~~~l~~~~-------~~~d~vi~~~~-- 74 (208)
+.+.-||.+.+++|.+.|++|+...|+.+++.++ ++ ..+.++..|++|.+++.+++ ..+|++|++++
T Consensus 13 GASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDiLvNNAGl~ 92 (246)
T COG4221 13 GASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDILVNNAGLA 92 (246)
T ss_pred cCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccEEEecCCCC
Confidence 3578899999999999999999999999875433 33 35789999999998865555 35799997632
Q ss_pred --Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHHHHH
Q 028525 75 --GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDESMLM 124 (208)
Q Consensus 75 --~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~~l~ 124 (208)
+. ....+.+.+-.++|.+||+....+......|+..++ +.+.+...+.+.
T Consensus 93 ~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~y~~~~vY~ATK~aV~~fs~~LR~e~~ 172 (246)
T COG4221 93 LGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYPYPGGAVYGATKAAVRAFSLGLRQELA 172 (246)
T ss_pred cCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccccCCCCccchhhHHHHHHHHHHHHHHhc
Confidence 11 112344555569999999986555555566766432 112222233344
Q ss_pred hcCCCEEEEeccccccCCCCc-----cceeeecCCcCCCcccHHHHHHHHHHHhhCCCCC
Q 028525 125 ASGIPYTIIRTGVLQNTPGGK-----QGFQFEEGCAANGSLSKEDAAFICVEALESIPQT 179 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~ 179 (208)
..++++|.|-||.+....-.. .......-......+..+|||+++..+++.|...
T Consensus 173 g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y~~~~~l~p~dIA~~V~~~~~~P~~v 232 (246)
T COG4221 173 GTGIRVTVISPGLVETTEFSTVRFEGDDERADKVYKGGTALTPEDIAEAVLFAATQPQHV 232 (246)
T ss_pred CCCeeEEEecCceecceecccccCCchhhhHHHHhccCCCCCHHHHHHHHHHHHhCCCcc
Confidence 579999999999984432111 0011111112355678899999999999999864
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.4e-12 Score=95.44 Aligned_cols=182 Identities=16% Similarity=0.070 Sum_probs=115.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-hh---h---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-AM---E---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~---~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||+++++.|+++|++|+++.|+... .. . ....++.++.+|+.|.+++.++++ .+|++|+++
T Consensus 9 G~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id~vi~~a 88 (245)
T PRK12824 9 GAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPVDILVNNA 88 (245)
T ss_pred CCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 569999999999999999999999998532 11 1 112358899999999999888775 379999873
Q ss_pred CC----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 EG----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~~----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+. . ....++..+.++||++||...+.+......|...++.. +.+....
T Consensus 89 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~~~Y~~sK~a~~~~~~~l~~ 168 (245)
T PRK12824 89 GITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQFGQTNYSAAKAGMIGFTKALAS 168 (245)
T ss_pred CCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccCCCCChHHHHHHHHHHHHHHHHHH
Confidence 21 0 01233455677999999987765443344454433211 1111122
Q ss_pred HHHhcCCCEEEEeccccccCCCCccc--e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQG--F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~~--~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.+...++++++++||.+......... . .+............+|+++++..++..+. ..|+.+++.+|.
T Consensus 169 ~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~g~ 242 (245)
T PRK12824 169 EGARYGITVNCIAPGYIATPMVEQMGPEVLQSIVNQIPMKRLGTPEEIAAAVAFLVSEAAGFITGETISINGGL 242 (245)
T ss_pred HHHHhCeEEEEEEEcccCCcchhhcCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCccCcEEEECCCe
Confidence 34456899999999998543221100 0 01111112334577999999988875543 357888887653
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-11 Score=96.70 Aligned_cols=182 Identities=14% Similarity=0.130 Sum_probs=112.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-----hhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-----AME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-----~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++..|+.+. ..+ ..+..+.++.+|++|++++.++++ ++|++|++
T Consensus 62 Gas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lV~n 141 (300)
T PRK06128 62 GADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELGGLDILVNI 141 (300)
T ss_pred cCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 358999999999999999999888765432 111 123457889999999998887764 57999987
Q ss_pred CC-----Cch----------------------hhhhhh--cCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 73 SE-----GFI----------------------SNAGSL--KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 73 ~~-----~~~----------------------~~a~~~--~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
++ ... .+++.. ..-.+||++||...+........|...+... +.+....
T Consensus 142 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~asK~a~~~~~~~la~ 221 (300)
T PRK06128 142 AGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSPTLLDYASTKAAIVAFTKALAK 221 (300)
T ss_pred CcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 32 100 111111 1124899999998876544444565533211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCccce------eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQGF------QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGE 189 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~~~------~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~ 189 (208)
.+...+++++.|+||++.......... .+............+|+|.+++.++.+... .++.|++.+|.
T Consensus 222 el~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~~l~s~~~~~~~G~~~~v~gg~ 297 (300)
T PRK06128 222 QVAEKGIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSETPMKRPGQPVEMAPLYVLLASQESSYVTGEVFGVTGGL 297 (300)
T ss_pred HhhhcCcEEEEEEECcCcCCCcccCCCCHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCccccCccCcEEeeCCCE
Confidence 233479999999999986542211000 011111123344679999999988875442 47888888653
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.5e-12 Score=96.15 Aligned_cols=180 Identities=12% Similarity=0.047 Sum_probs=110.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh--hh-hh--cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN--AM-ES--FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~--~~-~~--~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~ 75 (208)
+++|.||++++++|+++|++|++++|+... .. +. .+..+.++.+|++|.+++.++++ ++|++|++++.
T Consensus 15 Gas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~nAg~ 94 (260)
T PRK12823 15 GAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRIDVLINNVGG 94 (260)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 469999999999999999999999997532 11 11 13357788999999988877765 47999987321
Q ss_pred -----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 76 -----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 76 -----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
. ....+.+.+..+||++||...+.. +..+|..+++.. +.+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~--~~~~Y~~sK~a~~~~~~~la~e 172 (260)
T PRK12823 95 TIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI--NRVPYSAAKGGVNALTASLAFE 172 (260)
T ss_pred ccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC--CCCccHHHHHHHHHHHHHHHHH
Confidence 1 011234456679999999876532 233455433211 11111112
Q ss_pred HHhcCCCEEEEeccccccCCCCc--------cc-eee--------ecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEE
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGK--------QG-FQF--------EEGCAANGSLSKEDAAFICVEALESIP--QTGLIF 183 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~--------~~-~~~--------~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~ 183 (208)
+...+++++.|+||.+....... .. ..+ ........+.+.+|+|++++.++.++. ..++.+
T Consensus 173 ~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~ 252 (260)
T PRK12823 173 YAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSLMKRYGTIDEQVAAILFLASDEASYITGTVL 252 (260)
T ss_pred hcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCCcccCCCHHHHHHHHHHHcCcccccccCcEE
Confidence 23468999999999986532100 00 000 000011223357999999999886543 246788
Q ss_pred EEeeCC
Q 028525 184 EVVNGE 189 (208)
Q Consensus 184 ~i~~~~ 189 (208)
++.+|.
T Consensus 253 ~v~gg~ 258 (260)
T PRK12823 253 PVGGGD 258 (260)
T ss_pred eecCCC
Confidence 887554
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.7e-12 Score=96.27 Aligned_cols=178 Identities=13% Similarity=0.090 Sum_probs=110.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-hh---hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-AM---ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~---~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~- 75 (208)
+++|.||++++++|+++|++|+++.|+... .. ...+..+.++.+|++|++++..+++ ++|++|++++.
T Consensus 12 Gas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag~~ 91 (248)
T TIGR01832 12 GANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHIDILVNNAGII 91 (248)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 468999999999999999999999997532 11 1123468899999999999886663 47999987321
Q ss_pred ---c----------------------hhhh----hhhcC-CCeEEEeceeeeccCCCCcccccchhHHHhHHH-HHHH--
Q 028525 76 ---F----------------------ISNA----GSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-DESM-- 122 (208)
Q Consensus 76 ---~----------------------~~~a----~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~e~~-- 122 (208)
. ..++ +...+ ..++|++||...+.+......|...++ ..+. ++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sKa--a~~~~~~~la~ 169 (248)
T TIGR01832 92 RRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGIRVPSYTASKH--GVAGLTKLLAN 169 (248)
T ss_pred CCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCCCCCchhHHHHH--HHHHHHHHHHH
Confidence 0 0111 22333 468999999877654433445554332 2111 1111
Q ss_pred -HHhcCCCEEEEeccccccCCCCcc---ce---eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEee
Q 028525 123 -LMASGIPYTIIRTGVLQNTPGGKQ---GF---QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVN 187 (208)
Q Consensus 123 -l~~~~~~~tivRp~~~~~~~~~~~---~~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~ 187 (208)
+...+++++.++||.+........ .. .+........+++.+|+|++++.++..+.. .|+.+.+.+
T Consensus 170 e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~~dg 243 (248)
T TIGR01832 170 EWAAKGINVNAIAPGYMATNNTQALRADEDRNAAILERIPAGRWGTPDDIGGPAVFLASSASDYVNGYTLAVDG 243 (248)
T ss_pred HhCccCcEEEEEEECcCcCcchhccccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCcCCcEEEeCC
Confidence 223589999999998854322110 00 000011224567889999999999875442 366655543
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-12 Score=110.72 Aligned_cols=181 Identities=13% Similarity=0.109 Sum_probs=116.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcC--CceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFG--TYVESMAGDASNKKFLKTALR-------GVRSIICPSE- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~--~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~- 74 (208)
+++|.||+++++.|+++|++|++++|+.++... ... .++.++.+|++|.+++.++++ ++|+||++++
T Consensus 429 GasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG~ 508 (681)
T PRK08324 429 GAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAGI 508 (681)
T ss_pred cCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 358999999999999999999999999876322 122 268899999999999888775 5799998733
Q ss_pred ---Cc----------------------h----hhhhhhcCC-CeEEEeceeeeccCCCCcccccchhHHHhHH-HHHHHH
Q 028525 75 ---GF----------------------I----SNAGSLKGV-QHVILLSQLSVYRGSGGIQALMKGNARKLAE-QDESML 123 (208)
Q Consensus 75 ---~~----------------------~----~~a~~~~gv-~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~-~~e~~l 123 (208)
+. + ...++..+. .+||++||.....+..+...|...++ ..+ .++.+-
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~~~~~~Y~asKa--a~~~l~~~la 586 (681)
T PRK08324 509 AISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPGPNFGAYGAAKA--AELHLVRQLA 586 (681)
T ss_pred CCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCCCCcHHHHHHHH--HHHHHHHHHH
Confidence 10 0 112334454 68999999876554333445544332 211 122221
Q ss_pred ---HhcCCCEEEEeccccc-cCCCCccce----------e-------eecCCcCCCcccHHHHHHHHHHHhh--CCCCCC
Q 028525 124 ---MASGIPYTIIRTGVLQ-NTPGGKQGF----------Q-------FEEGCAANGSLSKEDAAFICVEALE--SIPQTG 180 (208)
Q Consensus 124 ---~~~~~~~tivRp~~~~-~~~~~~~~~----------~-------~~~~~~~~~~v~~~Dva~~~~~~l~--~~~~~~ 180 (208)
...++++++|+|+.++ +.......+ . +..+.....+++.+|+|++++.++. .+...+
T Consensus 587 ~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~v~~~DvA~a~~~l~s~~~~~~tG 666 (681)
T PRK08324 587 LELGPDGIRVNGVNPDAVVRGSGIWTGEWIEARAAAYGLSEEELEEFYRARNLLKREVTPEDVAEAVVFLASGLLSKTTG 666 (681)
T ss_pred HHhcccCeEEEEEeCceeecCCccccchhhhhhhhhccCChHHHHHHHHhcCCcCCccCHHHHHHHHHHHhCccccCCcC
Confidence 2357999999999996 221111000 0 1111122456788999999999884 333457
Q ss_pred cEEEEeeCCc
Q 028525 181 LIFEVVNGEE 190 (208)
Q Consensus 181 ~~~~i~~~~~ 190 (208)
+.+++.+|..
T Consensus 667 ~~i~vdgG~~ 676 (681)
T PRK08324 667 AIITVDGGNA 676 (681)
T ss_pred CEEEECCCch
Confidence 8899986643
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.7e-12 Score=94.59 Aligned_cols=179 Identities=13% Similarity=0.081 Sum_probs=113.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---c--CCceEEEEcCCCCHHHHHHHhcC---CCEEEEcCC----C
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---F--GTYVESMAGDASNKKFLKTALRG---VRSIICPSE----G 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~--~~~v~~v~~Dl~d~~~l~~~~~~---~d~vi~~~~----~ 75 (208)
+.+|.||++++++|+++|++|++++|+.++.... . +.+++++.+|++|++++.++++. +|++|++.+ +
T Consensus 4 Gas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~~~~~ 83 (230)
T PRK07041 4 GGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAADTPGG 83 (230)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 5689999999999999999999999987653221 1 34688999999999999999864 699998722 1
Q ss_pred ch----------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHH-HHHHHH-hcCCCEE
Q 028525 76 FI----------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-DESMLM-ASGIPYT 131 (208)
Q Consensus 76 ~~----------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~e~~l~-~~~~~~t 131 (208)
.. .++....+.++||++||.+.+....+...|...+ ...+. ++.+-. ..+++++
T Consensus 84 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~sK--~a~~~~~~~la~e~~~irv~ 161 (230)
T PRK07041 84 PVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVRPSASGVLQGAIN--AALEALARGLALELAPVRVN 161 (230)
T ss_pred ChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcCCCCcchHHHHHH--HHHHHHHHHHHHHhhCceEE
Confidence 10 1112223557999999998776544444554432 21111 111111 1358899
Q ss_pred EEeccccccCCCC----ccce-ee---ecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC
Q 028525 132 IIRTGVLQNTPGG----KQGF-QF---EEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNG 188 (208)
Q Consensus 132 ivRp~~~~~~~~~----~~~~-~~---~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~ 188 (208)
.++||.+...... .... .+ ............+|+|+++..++.++...++.|++.+|
T Consensus 162 ~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~G~~~~v~gg 226 (230)
T PRK07041 162 TVSPGLVDTPLWSKLAGDAREAMFAAAAERLPARRVGQPEDVANAILFLAANGFTTGSTVLVDGG 226 (230)
T ss_pred EEeecccccHHHHhhhccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCcCCcEEEeCCC
Confidence 9999987432110 0000 00 00011122345799999999999865555788888754
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.1e-12 Score=97.19 Aligned_cols=182 Identities=13% Similarity=0.109 Sum_probs=113.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---h----cCCceEEEEcCCCCHHHHHHHhc------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---S----FGTYVESMAGDASNKKFLKTALR------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~----~~~~v~~v~~Dl~d~~~l~~~~~------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++.+|+.++..+ . .+.++.++.+|++|++++.++++ +.|++|++++
T Consensus 15 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~iD~lv~nag 94 (263)
T PRK08339 15 ASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEPDIFFFSTG 94 (263)
T ss_pred CCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCCcEEEECCC
Confidence 358899999999999999999999998765321 1 13468899999999999988875 4799997732
Q ss_pred C----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHH
Q 028525 75 G----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESM 122 (208)
Q Consensus 75 ~----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 122 (208)
. . +...+++.+..++|++||.....+......|...++- .+.+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~~~~~~~y~asKaal~~l~~~la~e 174 (263)
T PRK08339 95 GPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPIPNIALSNVVRISMAGLVRTLAKE 174 (263)
T ss_pred CCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 1 0 0122445566799999998765433333344432211 111112233
Q ss_pred HHhcCCCEEEEeccccccCCCCc--------c----ce---eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEE
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGK--------Q----GF---QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEV 185 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~--------~----~~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i 185 (208)
+...|+++..|.||.+....... . .. .+....+.......+|+|.++..++.++. ..++.+.+
T Consensus 175 l~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~fL~s~~~~~itG~~~~v 254 (263)
T PRK08339 175 LGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKPIPLGRLGEPEEIGYLVAFLASDLGSYINGAMIPV 254 (263)
T ss_pred hcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhccCCcccCcCHHHHHHHHHHHhcchhcCccCceEEE
Confidence 44578999999999884321100 0 00 00001111234567999999999886543 24666766
Q ss_pred eeCC
Q 028525 186 VNGE 189 (208)
Q Consensus 186 ~~~~ 189 (208)
.+|.
T Consensus 255 dgG~ 258 (263)
T PRK08339 255 DGGR 258 (263)
T ss_pred CCCc
Confidence 6443
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-11 Score=94.37 Aligned_cols=180 Identities=13% Similarity=0.108 Sum_probs=108.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-hh-------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-AM-------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~-------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+++|+||++++++|+++|++|++++|+..+ .. ......+.++.+|++|.+++.++++ ++|+||++
T Consensus 13 Ga~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ 92 (249)
T PRK09135 13 GGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFGRLDALVNN 92 (249)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 469999999999999999999999986432 11 1112357889999999999988876 46999988
Q ss_pred CCC----c----------------------hhhhhhh---cCCCeEEEeceeeeccCCCCcccccchhHHHhHHH-HHHH
Q 028525 73 SEG----F----------------------ISNAGSL---KGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-DESM 122 (208)
Q Consensus 73 ~~~----~----------------------~~~a~~~---~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~e~~ 122 (208)
++. . +.+++.. ..-..++.+++.....+..+...|... |...+. +..+
T Consensus 93 ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s--K~~~~~~~~~l 170 (249)
T PRK09135 93 ASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAERPLKGYPVYCAA--KAALEMLTRSL 170 (249)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhcCCCCCchhHHHH--HHHHHHHHHHH
Confidence 321 0 1112211 112356666665444333344455543 222211 1111
Q ss_pred HHh--cCCCEEEEeccccccCCCCcccee------eecCCcCCCcccHHHHHHHHHHHhhCCC-CCCcEEEEeeCCc
Q 028525 123 LMA--SGIPYTIIRTGVLQNTPGGKQGFQ------FEEGCAANGSLSKEDAAFICVEALESIP-QTGLIFEVVNGEE 190 (208)
Q Consensus 123 l~~--~~~~~tivRp~~~~~~~~~~~~~~------~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~i~~~~~ 190 (208)
-++ .+++++.+||+.++...... .+. ...........+.+|+|+++..++.+.. ..|++|++.+|..
T Consensus 171 ~~~~~~~i~~~~v~pg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~g~~~~i~~g~~ 246 (249)
T PRK09135 171 ALELAPEVRVNAVAPGAILWPEDGN-SFDEEARQAILARTPLKRIGTPEDIAEAVRFLLADASFITGQILAVDGGRS 246 (249)
T ss_pred HHHHCCCCeEEEEEeccccCccccc-cCCHHHHHHHHhcCCcCCCcCHHHHHHHHHHHcCccccccCcEEEECCCee
Confidence 122 36999999999987543211 110 0001111223467999999976665433 4688999997653
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.5e-12 Score=96.21 Aligned_cols=181 Identities=10% Similarity=0.088 Sum_probs=110.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|++.+.... .+.++.++.+|++|.+++..+++ .+|++|++++
T Consensus 12 Ga~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~d~vi~~ag 91 (258)
T PRK07890 12 GVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRVDALVNNAF 91 (258)
T ss_pred CCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCccEEEECCc
Confidence 5699999999999999999999999987653221 13467899999999998877664 4699998732
Q ss_pred ---C--c----------------------hhhhhhh---cCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 75 ---G--F----------------------ISNAGSL---KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 75 ---~--~----------------------~~~a~~~---~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
. . +.+++.. ...++||++||.....+..+...|...+... +.+.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sK~a~~~l~~~~a~~ 171 (258)
T PRK07890 92 RVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHSQPKYGAYKMAKGALLAASQSLATE 171 (258)
T ss_pred cCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 1 0 0011111 1225899999987665444444555433211 11111122
Q ss_pred HHhcCCCEEEEeccccccCCCCcc--------cee----e---ecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEE
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQ--------GFQ----F---EEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEV 185 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~--------~~~----~---~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i 185 (208)
+...+++++.+|||.+........ ... . ..........+.+|+|.+++.++.+.. ..++.+.+
T Consensus 172 ~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~l~~~~~~~~~G~~i~~ 251 (258)
T PRK07890 172 LGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAANSDLKRLPTDDEVASAVLFLASDLARAITGQTLDV 251 (258)
T ss_pred HhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhcCCccccCCHHHHHHHHHHHcCHhhhCccCcEEEe
Confidence 334689999999998865321100 000 0 001112334567999999998886432 24566655
Q ss_pred eeC
Q 028525 186 VNG 188 (208)
Q Consensus 186 ~~~ 188 (208)
.++
T Consensus 252 ~gg 254 (258)
T PRK07890 252 NCG 254 (258)
T ss_pred CCc
Confidence 543
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-11 Score=98.51 Aligned_cols=170 Identities=9% Similarity=-0.001 Sum_probs=107.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+.+|.||++++++|+++|++|+++.|+.++..+. .+..+.++.+|++|++++.++++ ++|++|++++
T Consensus 14 GAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 14 GASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3588999999999999999999999988764221 23457788999999999888773 5799998732
Q ss_pred ----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHH
Q 028525 75 ----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESM 122 (208)
Q Consensus 75 ----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 122 (208)
+.+ ...+.+.+..+||++||...+.+......|..++.- .+.+.....
T Consensus 94 ~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~p~~~~Y~asKaal~~~~~sL~~E 173 (330)
T PRK06139 94 VGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQPYAAAYSASKFGLRGFSEALRGE 173 (330)
T ss_pred cCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 110 011234455689999988766543333445543321 111111112
Q ss_pred HHh-cCCCEEEEeccccccCCCCc-cceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 123 LMA-SGIPYTIIRTGVLQNTPGGK-QGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 123 l~~-~~~~~tivRp~~~~~~~~~~-~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
+.. .++.++.|.||.+....... ...............+.+|+|++++.+++++.
T Consensus 174 l~~~~gI~V~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~pe~vA~~il~~~~~~~ 230 (330)
T PRK06139 174 LADHPDIHVCDVYPAFMDTPGFRHGANYTGRRLTPPPPVYDPRRVAKAVVRLADRPR 230 (330)
T ss_pred hCCCCCeEEEEEecCCccCcccccccccccccccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 333 48999999999884432111 11111011112335678999999999998765
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-11 Score=96.23 Aligned_cols=164 Identities=13% Similarity=0.029 Sum_probs=106.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+..+.++.+|++|.+++.++++ ++|++|++++
T Consensus 47 GasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG 126 (293)
T PRK05866 47 GASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAG 126 (293)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3589999999999999999999999997653221 12357789999999999988886 6799998732
Q ss_pred Cc----h----------------------------hhhhhhcCCCeEEEeceeeeccC-CCCcccccchhHHH--hHHHH
Q 028525 75 GF----I----------------------------SNAGSLKGVQHVILLSQLSVYRG-SGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 75 ~~----~----------------------------~~a~~~~gv~~~v~~Ss~~~~~~-~~~~~~~~~~~~~~--~~~~~ 119 (208)
.. . ...+...+..++|++||.+++.. ......|...++.. +.+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~p~~~~Y~asKaal~~l~~~l 206 (293)
T PRK05866 127 RSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEASPLFSVYNASKAALSAVSRVI 206 (293)
T ss_pred CCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 10 0 01133566779999999876542 22233454432211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~ 176 (208)
...+...+++++.++||.+..... .... . ......++.+++|+.++.+++++
T Consensus 207 a~e~~~~gI~v~~v~pg~v~T~~~-~~~~-~---~~~~~~~~pe~vA~~~~~~~~~~ 258 (293)
T PRK05866 207 ETEWGDRGVHSTTLYYPLVATPMI-APTK-A---YDGLPALTADEAAEWMVTAARTR 258 (293)
T ss_pred HHHhcccCcEEEEEEcCcccCccc-cccc-c---ccCCCCCCHHHHHHHHHHHHhcC
Confidence 122334689999999997643221 1110 0 01123468899999999999864
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.4e-12 Score=93.22 Aligned_cols=167 Identities=17% Similarity=0.158 Sum_probs=114.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-hhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-AMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF---------- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~---------- 76 (208)
+++|+.|+++++.....+|.|.++.|+..+ ..+.....++++.+|.....-....+.+...++.+.++.
T Consensus 59 ggnpfsgs~vlk~A~~vv~svgilsen~~k~~l~sw~~~vswh~gnsfssn~~k~~l~g~t~v~e~~ggfgn~~~m~~in 138 (283)
T KOG4288|consen 59 GGNPFSGSEVLKNATNVVHSVGILSENENKQTLSSWPTYVSWHRGNSFSSNPNKLKLSGPTFVYEMMGGFGNIILMDRIN 138 (283)
T ss_pred cCCCcchHHHHHHHHhhceeeeEeecccCcchhhCCCcccchhhccccccCcchhhhcCCcccHHHhcCccchHHHHHhc
Confidence 469999999999999999999999999765 333345578999999877666667778888888663221
Q ss_pred ------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHH-HhcCCCEEEEeccccccCCCCcc---
Q 028525 77 ------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESML-MASGIPYTIIRTGVLQNTPGGKQ--- 146 (208)
Q Consensus 77 ------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l-~~~~~~~tivRp~~~~~~~~~~~--- 146 (208)
...+++++|+++|+|+|.....-++.-+..|.. .|+ ++|..| ..++++-+++|||++++.-..+.
T Consensus 139 g~ani~a~kaa~~~gv~~fvyISa~d~~~~~~i~rGY~~--gKR---~AE~Ell~~~~~rgiilRPGFiyg~R~v~g~~~ 213 (283)
T KOG4288|consen 139 GTANINAVKAAAKAGVPRFVYISAHDFGLPPLIPRGYIE--GKR---EAEAELLKKFRFRGIILRPGFIYGTRNVGGIKS 213 (283)
T ss_pred cHhhHHHHHHHHHcCCceEEEEEhhhcCCCCccchhhhc--cch---HHHHHHHHhcCCCceeeccceeecccccCcccc
Confidence 245678899999999997543222222222322 333 445444 45789999999999987532110
Q ss_pred -------c------ee------ee-cCCcCCCcccHHHHHHHHHHHhhCCCCC
Q 028525 147 -------G------FQ------FE-EGCAANGSLSKEDAAFICVEALESIPQT 179 (208)
Q Consensus 147 -------~------~~------~~-~~~~~~~~v~~~Dva~~~~~~l~~~~~~ 179 (208)
. .. +. .++....+++.+++|.+.+.++++|...
T Consensus 214 pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai~dp~f~ 266 (283)
T KOG4288|consen 214 PLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALAALKAIEDPDFK 266 (283)
T ss_pred cHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHHHHHhccCCCcC
Confidence 0 00 00 1122245678899999999999988754
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-11 Score=93.90 Aligned_cols=187 Identities=14% Similarity=0.030 Sum_probs=114.1
Q ss_pred Cchhhhc-----cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----h--cCCceEEEEcCCCCHHHHHHHhc-----
Q 028525 1 MGPMKKM-----KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----S--FGTYVESMAGDASNKKFLKTALR----- 64 (208)
Q Consensus 1 ~~~~~~~-----~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~--~~~~v~~v~~Dl~d~~~l~~~~~----- 64 (208)
|+.|+.+ +++|.||++++++|+++|++|+++.|+ ++..+ . .+.++.++.+|++|++++.++++
T Consensus 1 m~~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 1 MKRLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 6666443 468999999999999999999999998 43211 1 13358899999999988877764
Q ss_pred --CCCEEEEcCC-----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchh
Q 028525 65 --GVRSIICPSE-----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGN 111 (208)
Q Consensus 65 --~~d~vi~~~~-----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~ 111 (208)
..|++|++++ +.. ...+.+.+ .+||++||...+.+......|..++
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~asK 158 (272)
T PRK08589 80 FGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSIINTSSFSGQAADLYRSGYNAAK 158 (272)
T ss_pred cCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEeCchhhcCCCCCCchHHHHH
Confidence 3699997721 110 11133344 6899999987665433344555433
Q ss_pred HH--HhHHHHHHHHHhcCCCEEEEeccccccCCCCcc----cee----ee----cCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 112 AR--KLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQ----GFQ----FE----EGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 112 ~~--~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~----~~~----~~----~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
+- .+.+..-..+...+++++.|.||.+........ ... +. .........+.+|+|+++..++.++.
T Consensus 159 aal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~~ 238 (272)
T PRK08589 159 GAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQKWMTPLGRLGKPEEVAKLVVFLASDDS 238 (272)
T ss_pred HHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhhccCCCCCCcCHHHHHHHHHHHcCchh
Confidence 21 111111122334689999999998753211100 000 00 00011234567999999999887543
Q ss_pred --CCCcEEEEeeCC
Q 028525 178 --QTGLIFEVVNGE 189 (208)
Q Consensus 178 --~~~~~~~i~~~~ 189 (208)
..|+.+.+.+|.
T Consensus 239 ~~~~G~~i~vdgg~ 252 (272)
T PRK08589 239 SFITGETIRIDGGV 252 (272)
T ss_pred cCcCCCEEEECCCc
Confidence 346777776553
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-11 Score=93.58 Aligned_cols=179 Identities=13% Similarity=0.106 Sum_probs=112.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHh-------cCCCEEEEcCCC-----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTAL-------RGVRSIICPSEG----- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~-------~~~d~vi~~~~~----- 75 (208)
+++|.||++++++|+++|++|+++.|+.++. ...++.++.+|+.|++++.+++ .+.|++|++++.
T Consensus 16 Gas~gIG~~ia~~l~~~G~~v~~~~r~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~ 92 (260)
T PRK06523 16 GGTKGIGAATVARLLEAGARVVTTARSRPDD---LPEGVEFVAADLTTAEGCAAVARAVLERLGGVDILVHVLGGSSAPA 92 (260)
T ss_pred CCCCchhHHHHHHHHHCCCEEEEEeCChhhh---cCCceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEEECCcccccCC
Confidence 3589999999999999999999999987542 2346889999999998877654 357999987321
Q ss_pred -c--------------------------hhhhhhhcCCCeEEEeceeeeccCCC-CcccccchhHHH--hHHHHHHHHHh
Q 028525 76 -F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSG-GIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 76 -~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~-~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
. ....+.+.+..+||++||...+.+.. +...|...+... +.+.....+..
T Consensus 93 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~~Y~~sK~a~~~l~~~~a~~~~~ 172 (260)
T PRK06523 93 GGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPLPESTTAYAAAKAALSTYSKSLSKEVAP 172 (260)
T ss_pred CCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCCCCCcchhHHHHHHHHHHHHHHHHHHhh
Confidence 0 01123345567899999987665322 344555433211 11111122334
Q ss_pred cCCCEEEEeccccccCCCCcc------c--eeee----------cCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEE
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQ------G--FQFE----------EGCAANGSLSKEDAAFICVEALESIP--QTGLIFEV 185 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~------~--~~~~----------~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i 185 (208)
.++++++|+||++........ . .... ...........+|+|+++..++.++. ..++.+.+
T Consensus 173 ~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~v 252 (260)
T PRK06523 173 KGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSLGGIPLGRPAEPEEVAELIAFLASDRAASITGTEYVI 252 (260)
T ss_pred cCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHhccCccCCCCCHHHHHHHHHHHhCcccccccCceEEe
Confidence 689999999999854321100 0 0000 00111223467999999999887543 34778888
Q ss_pred eeCC
Q 028525 186 VNGE 189 (208)
Q Consensus 186 ~~~~ 189 (208)
.+|.
T Consensus 253 dgg~ 256 (260)
T PRK06523 253 DGGT 256 (260)
T ss_pred cCCc
Confidence 7654
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-11 Score=93.83 Aligned_cols=181 Identities=17% Similarity=0.110 Sum_probs=112.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|++++..+. .+.++.++.+|++|++++.++++ .+|++|++++
T Consensus 13 Gas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag 92 (254)
T PRK07478 13 GASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGLDIAFNNAG 92 (254)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4689999999999999999999999987653221 12357889999999998888775 5799998722
Q ss_pred -----Cch--------------------------hhhhhhcCCCeEEEeceeeecc-CCCCcccccchhHHH--hHHHHH
Q 028525 75 -----GFI--------------------------SNAGSLKGVQHVILLSQLSVYR-GSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 75 -----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~-~~~~~~~~~~~~~~~--~~~~~e 120 (208)
+.. ...+.+.+..+||++||...+. ...+...|..+++.. +.+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~~~~~~~~Y~~sK~a~~~~~~~la 172 (254)
T PRK07478 93 TLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTAGFPGMAAYAASKAGLIGLTQVLA 172 (254)
T ss_pred CCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhccCCCCcchhHHHHHHHHHHHHHHH
Confidence 110 1123445567899999976552 223334455433211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCccce--e----eecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQGF--Q----FEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~~~--~----~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
..+...+++++.|+||++.......... . +..........+.+|+|+.++.++.++.. .|+.+.+.+|
T Consensus 173 ~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg 248 (254)
T PRK07478 173 AEYGAQGIRVNALLPGGTDTPMGRAMGDTPEALAFVAGLHALKRMAQPEEIAQAALFLASDAASFVTGTALLVDGG 248 (254)
T ss_pred HHHhhcCEEEEEEeeCcccCcccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCCCCCeEEeCCc
Confidence 2233468999999999985432111000 0 00000112345779999999998875542 4677766543
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-11 Score=93.34 Aligned_cols=166 Identities=14% Similarity=0.034 Sum_probs=105.3
Q ss_pred hccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc--CCceEEEEcCCCCHHHHHHHhcC----CCEEEEcCCC--c-
Q 028525 6 KMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF--GTYVESMAGDASNKKFLKTALRG----VRSIICPSEG--F- 76 (208)
Q Consensus 6 ~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~----~d~vi~~~~~--~- 76 (208)
.-+++|.||++++++|+++|++|++++|++++..+.. ..++.++.+|++|.+++.++++. .|.+|++++. .
T Consensus 6 ItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ag~~~~~ 85 (240)
T PRK06101 6 ITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNAGDCEYM 85 (240)
T ss_pred EEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcCcccccC
Confidence 3467999999999999999999999999877643322 23588999999999999999875 3677755211 0
Q ss_pred -----------------------hhhhhhh--cCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCCC
Q 028525 77 -----------------------ISNAGSL--KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGIP 129 (208)
Q Consensus 77 -----------------------~~~a~~~--~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~~ 129 (208)
..+++.. .+.+++|++||.....+......|...++.. +.+.....+...+++
T Consensus 86 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~ 165 (240)
T PRK06101 86 DDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELALPRAEAYGASKAAVAYFARTLQLDLRPKGIE 165 (240)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccCCCCCchhhHHHHHHHHHHHHHHHHHHhcCce
Confidence 0011111 1235788888875443333334555433211 111111223457999
Q ss_pred EEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 130 YTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 130 ~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
++.+|||++......... . .....++.+|+|+.++..++.+.
T Consensus 166 v~~v~pg~i~t~~~~~~~--~----~~~~~~~~~~~a~~i~~~i~~~~ 207 (240)
T PRK06101 166 VVTVFPGFVATPLTDKNT--F----AMPMIITVEQASQEIRAQLARGK 207 (240)
T ss_pred EEEEeCCcCCCCCcCCCC--C----CCCcccCHHHHHHHHHHHHhcCC
Confidence 999999998643222110 1 11224689999999999998653
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-11 Score=92.73 Aligned_cols=182 Identities=13% Similarity=0.065 Sum_probs=112.4
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEc-Cchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVK-DKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R-~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
.+++|.||++++++|+++|++|+++.| ++.+... ....++.++.+|++|++++.++++ .+|+||++
T Consensus 6 tG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ 85 (242)
T TIGR01829 6 TGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPIDVLVNN 85 (242)
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCcEEEEC
Confidence 357999999999999999999999998 4333211 113468899999999998877664 47999987
Q ss_pred CCCc------------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 73 SEGF------------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 73 ~~~~------------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
++.. +...+++.+.++||++||........+...|...+... +.+...
T Consensus 86 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~~~y~~sk~a~~~~~~~la 165 (242)
T TIGR01829 86 AGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKGQFGQTNYSAAKAGMIGFTKALA 165 (242)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCCCcchhHHHHHHHHHHHHHHH
Confidence 3210 01223456778999999876544333333444422211 111112
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc-c-e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ-G-F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~-~-~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+.+...+++++.++||++........ . . .+............+|+++++..++.++. ..|+.+.+.++
T Consensus 166 ~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~gg 239 (242)
T TIGR01829 166 QEGATKGVTVNTISPGYIATDMVMAMREDVLNSIVAQIPVGRLGRPEEIAAAVAFLASEEAGYITGATLSINGG 239 (242)
T ss_pred HHhhhhCeEEEEEeeCCCcCccccccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEecCC
Confidence 22334689999999999865332110 0 0 01011112334567999999988776543 34778887755
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-11 Score=94.03 Aligned_cols=181 Identities=12% Similarity=0.068 Sum_probs=112.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh--hhhh---cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN--AMES---FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~--~~~~---~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~ 75 (208)
+++|.||++++++|++.|++|+++.|+... ..+. .+.++.++.+|+.|.+++.++++ .+|++|++++.
T Consensus 22 Gas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~ 101 (258)
T PRK06935 22 GGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGKIDILVNNAGT 101 (258)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 358999999999999999999999988321 1111 23468899999999999888876 57999987321
Q ss_pred ----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHH
Q 028525 76 ----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 76 ----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
. ....+...+.+++|++||...+.+......|...++.. +.+...+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~ 181 (258)
T PRK06935 102 IRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGGKFVPAYTASKHGVAGLTKAFANEL 181 (258)
T ss_pred CCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 0 01123345567999999987765433344555432211 111111223
Q ss_pred HhcCCCEEEEeccccccCCCCc----cce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGK----QGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~----~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
...+++++.|+||++....... ... ..........+...+|+|..+..++.+.. ..|+++.+.+|
T Consensus 182 ~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~~dgg 254 (258)
T PRK06935 182 AAYNIQVNAIAPGYIKTANTAPIRADKNRNDEILKRIPAGRWGEPDDLMGAAVFLASRASDYVNGHILAVDGG 254 (258)
T ss_pred hhhCeEEEEEEeccccccchhhcccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCC
Confidence 3468999999999975432110 000 00001112445677999999998886543 24677766544
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-11 Score=94.25 Aligned_cols=180 Identities=16% Similarity=0.136 Sum_probs=111.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchh----hhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRN----AME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~----~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
.+|.||++++++|+++|++|+++.|+... ... ..+.++.++.+|++|.+++.++++ .+|++|++++
T Consensus 54 asggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~iD~lI~~Ag 133 (290)
T PRK06701 54 GDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGRLDILVNNAA 133 (290)
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 58999999999999999999999987532 111 113357889999999998888774 4699997722
Q ss_pred C-----ch----------------------hhhhhh--cCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHHH
Q 028525 75 G-----FI----------------------SNAGSL--KGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESML 123 (208)
Q Consensus 75 ~-----~~----------------------~~a~~~--~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~l 123 (208)
. .. ..++.. ....+||++||...+........|..+++. .+.+.....+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~~sK~a~~~l~~~la~~~ 213 (290)
T PRK06701 134 FQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGNETLIDYSATKGAIHAFTRSLAQSL 213 (290)
T ss_pred ccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 1 00 011111 122589999998877544334455543221 1111111122
Q ss_pred HhcCCCEEEEeccccccCCCCccc----e-eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQG----F-QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~~----~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
...+++++.|+||.+......... . .+........+.+.+|+|++++.++.+.. ..+..+.+.++
T Consensus 214 ~~~gIrv~~i~pG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ll~~~~~~~~G~~i~idgg 285 (290)
T PRK06701 214 VQKGIRVNAVAPGPIWTPLIPSDFDEEKVSQFGSNTPMQRPGQPEELAPAYVFLASPDSSYITGQMLHVNGG 285 (290)
T ss_pred hhcCeEEEEEecCCCCCcccccccCHHHHHHHHhcCCcCCCcCHHHHHHHHHHHcCcccCCccCcEEEeCCC
Confidence 246899999999987543211100 0 01111122446778999999999987653 24677877754
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-11 Score=93.75 Aligned_cols=179 Identities=14% Similarity=0.123 Sum_probs=108.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---c--CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---F--GTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~--~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~ 75 (208)
+++|.||+++++.|+++|++|++++|++++.... . ..++.++.+|++|++++.++++ ++|.+|++.+.
T Consensus 12 Ga~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ii~~ag~ 91 (238)
T PRK05786 12 GVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAIDGLVVTVGG 91 (238)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 4689999999999999999999999988754222 1 1257889999999998877664 35888876321
Q ss_pred c----h--------------------hhh-hhh-cCCCeEEEeceeeec-cCCCCcccccchhHHH--hHHHHHHHHHhc
Q 028525 76 F----I--------------------SNA-GSL-KGVQHVILLSQLSVY-RGSGGIQALMKGNARK--LAEQDESMLMAS 126 (208)
Q Consensus 76 ~----~--------------------~~a-~~~-~gv~~~v~~Ss~~~~-~~~~~~~~~~~~~~~~--~~~~~e~~l~~~ 126 (208)
. . .+. ... ..-.+||++||.... .+..+...|...+... +.+.....+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~~Y~~sK~~~~~~~~~~~~~~~~~ 171 (238)
T PRK05786 92 YVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYKASPDQLSYAVAKAGLAKAVEILASELLGR 171 (238)
T ss_pred cCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1 0 000 000 112478899887543 2222233344432211 111111223346
Q ss_pred CCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEee
Q 028525 127 GIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVN 187 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~ 187 (208)
+++++++||+++.+.......+.. ........++.+|+++.++.++.++. ..++.+.+.+
T Consensus 172 gi~v~~i~pg~v~~~~~~~~~~~~-~~~~~~~~~~~~~va~~~~~~~~~~~~~~~g~~~~~~~ 233 (238)
T PRK05786 172 GIRVNGIAPTTISGDFEPERNWKK-LRKLGDDMAPPEDFAKVIIWLLTDEADWVDGVVIPVDG 233 (238)
T ss_pred CeEEEEEecCccCCCCCchhhhhh-hccccCCCCCHHHHHHHHHHHhcccccCccCCEEEECC
Confidence 999999999998754321111110 01112335788999999999987544 2466666643
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-11 Score=92.19 Aligned_cols=183 Identities=14% Similarity=0.050 Sum_probs=112.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-hhhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-AMESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG---- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~---- 75 (208)
+++|.||++++++|+++|++|+++.|+... ..+....++.++.+|++|++++.++++ +.|++|++++.
T Consensus 14 Gas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~ 93 (255)
T PRK06463 14 GGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLVNNAGIMYLM 93 (255)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCC
Confidence 368999999999999999999988776543 222222357899999999999888875 46999987321
Q ss_pred c--------------------------hhhhhhhcCCCeEEEeceeeeccCC-CCcccccchhHHH--hHHHHHHHHHhc
Q 028525 76 F--------------------------ISNAGSLKGVQHVILLSQLSVYRGS-GGIQALMKGNARK--LAEQDESMLMAS 126 (208)
Q Consensus 76 ~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~-~~~~~~~~~~~~~--~~~~~e~~l~~~ 126 (208)
. ....+++.+..+||++||...+... .+...|..+++.. +.+.....+...
T Consensus 94 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~ 173 (255)
T PRK06463 94 PFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTAAEGTTFYAITKAGIIILTRRLAFELGKY 173 (255)
T ss_pred ChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCCCCCccHhHHHHHHHHHHHHHHHHHhhhc
Confidence 0 0112334556799999998766422 2233455433211 111111223346
Q ss_pred CCCEEEEeccccccCCCCcc--cee-------eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCc
Q 028525 127 GIPYTIIRTGVLQNTPGGKQ--GFQ-------FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEE 190 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~~~~~--~~~-------~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~ 190 (208)
+++++.++||++........ ... +..........+.+|+|++++.++.++. ..|+.+.+.+|..
T Consensus 174 ~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg~~ 248 (255)
T PRK06463 174 GIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKTVLKTTGKPEDIANIVLFLASDDARYITGQVIVADGGRI 248 (255)
T ss_pred CeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCCCcCCCcCHHHHHHHHHHHcChhhcCCCCCEEEECCCee
Confidence 89999999998743321110 000 0000111234567999999999887554 2467777765543
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.2e-11 Score=93.32 Aligned_cols=170 Identities=12% Similarity=0.060 Sum_probs=106.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----Cc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE----GF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----~~ 76 (208)
+++|.||++++++|+++|++|++++|+..+.......++.++.+|++|.+++.++++ ++|+||++++ +.
T Consensus 8 GasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~ 87 (274)
T PRK05693 8 GCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAGYGAMGP 87 (274)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCC
Confidence 568999999999999999999999999876544434467889999999998887763 5799998732 11
Q ss_pred ----------------------hhhh----hhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCC
Q 028525 77 ----------------------ISNA----GSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGI 128 (208)
Q Consensus 77 ----------------------~~~a----~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~ 128 (208)
+..+ ++ .+..++|++||...........+|...+... +.+.....+...++
T Consensus 88 ~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~~g~iv~isS~~~~~~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi 166 (274)
T PRK05693 88 LLDGGVEAMRRQFETNVFAVVGVTRALFPLLR-RSRGLVVNIGSVSGVLVTPFAGAYCASKAAVHALSDALRLELAPFGV 166 (274)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHHh-hcCCEEEEECCccccCCCCCccHHHHHHHHHHHHHHHHHHHhhhhCe
Confidence 0011 11 2346899999876554333334454432211 11111122345799
Q ss_pred CEEEEeccccccCCCCccce----eeecCC---------------cCCCcccHHHHHHHHHHHhhCCCC
Q 028525 129 PYTIIRTGVLQNTPGGKQGF----QFEEGC---------------AANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~~~~~----~~~~~~---------------~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
+++.++||.+.......... ...... ......+.+|+|+.++.+++++..
T Consensus 167 ~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~ 235 (274)
T PRK05693 167 QVMEVQPGAIASQFASNASREAEQLLAEQSPWWPLREHIQARARASQDNPTPAAEFARQLLAAVQQSPR 235 (274)
T ss_pred EEEEEecCccccccccccccchhhcCCCCCccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCCC
Confidence 99999999985432211000 000000 001235679999999999986543
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-11 Score=92.53 Aligned_cols=181 Identities=12% Similarity=0.011 Sum_probs=111.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.++++ ..|++|++++
T Consensus 16 Gas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 95 (254)
T PRK08085 16 GSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPIDVLINNAG 95 (254)
T ss_pred CCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3589999999999999999999999987653221 12357788999999999888764 3699998732
Q ss_pred C----c----------------------hh----hhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 75 G----F----------------------IS----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 75 ~----~----------------------~~----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
. . +. ..+...+..+||++||.....+..+...|...++.. +.+.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e 175 (254)
T PRK08085 96 IQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELGRDTITPYAASKGAVKMLTRGMCVE 175 (254)
T ss_pred cCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhccCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 1 0 00 112234567899999986544333444555433211 11111122
Q ss_pred HHhcCCCEEEEeccccccCCCCcc----ce-e-eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQ----GF-Q-FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~----~~-~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+...+++++.|+||++........ .+ . +....+...+...+|+|.++..++.... -.++...+.+|
T Consensus 176 ~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~~~~l~~~~~~~i~G~~i~~dgg 249 (254)
T PRK08085 176 LARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGG 249 (254)
T ss_pred HHhhCeEEEEEEeCCCCCcchhhhccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence 334699999999998865322110 00 0 0011112334567999999988887543 24566665543
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-11 Score=92.25 Aligned_cols=163 Identities=18% Similarity=0.172 Sum_probs=104.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------c-CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------F-GTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~-~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++++|++++..+. . +..+.++.+|++|++++.++++ ++|++|++
T Consensus 9 Gas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ 88 (248)
T PRK08251 9 GASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGGLDRVIVN 88 (248)
T ss_pred CCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 5799999999999999999999999987653221 1 2368889999999998877664 57999977
Q ss_pred CC----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCC-CCcccccchhHHH--hHHHH
Q 028525 73 SE----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGS-GGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 73 ~~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~-~~~~~~~~~~~~~--~~~~~ 119 (208)
++ .. ....+++.+.++||++||.....+. .+...|..+++.. +.+..
T Consensus 89 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~Y~~sK~a~~~~~~~l 168 (248)
T PRK08251 89 AGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGLPGVKAAYAASKAGVASLGEGL 168 (248)
T ss_pred CCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCCCCcccHHHHHHHHHHHHHHH
Confidence 32 10 0012344567799999997654322 2234454433211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
...+...+++++.++||++........ . .....++.+|.|+.++.++++..
T Consensus 169 ~~~~~~~~i~v~~v~pg~v~t~~~~~~----~---~~~~~~~~~~~a~~i~~~~~~~~ 219 (248)
T PRK08251 169 RAELAKTPIKVSTIEPGYIRSEMNAKA----K---STPFMVDTETGVKALVKAIEKEP 219 (248)
T ss_pred HHHhcccCcEEEEEecCcCcchhhhcc----c---cCCccCCHHHHHHHHHHHHhcCC
Confidence 111223589999999999854322111 0 01234678999999999997543
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-11 Score=92.27 Aligned_cols=191 Identities=12% Similarity=0.023 Sum_probs=124.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----------hcCCceEEEEcCCCCHHHHHHHhcC--CCEEEEc-CC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----------SFGTYVESMAGDASNKKFLKTALRG--VRSIICP-SE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----------~~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~-~~ 74 (208)
++||+-|++|++.|++.||+|.++.|+.+.... ....++.++.+|++|...+.++++. .|-|++. +.
T Consensus 9 GITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~PdEIYNLaAQ 88 (345)
T COG1089 9 GITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPDEIYNLAAQ 88 (345)
T ss_pred cccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCchhheecccc
Confidence 479999999999999999999999997543211 1123588999999999999999975 4788854 22
Q ss_pred Cc---------------------hhhhhhhcCC--CeEEEeceeeecc--------CCC---CcccccchhHHHhHH-HH
Q 028525 75 GF---------------------ISNAGSLKGV--QHVILLSQLSVYR--------GSG---GIQALMKGNARKLAE-QD 119 (208)
Q Consensus 75 ~~---------------------~~~a~~~~gv--~~~v~~Ss~~~~~--------~~~---~~~~~~~~~~~~~~~-~~ 119 (208)
.+ +.++++..|- -||...||.-.|+ +.. |.+||.. +|.++. .+
T Consensus 89 S~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPFyPrSPYAv--AKlYa~W~t 166 (345)
T COG1089 89 SHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAV--AKLYAYWIT 166 (345)
T ss_pred ccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccCCCCCCCCHHHH--HHHHHHhee
Confidence 11 3566666654 3888888876655 122 3334433 333221 01
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCcc----------------------ceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGKQ----------------------GFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~~----------------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
-.|=..+|+-.+ -|.+++.++..+ .+.++.-+....|=+..|..+++...|+++.
T Consensus 167 vNYResYgl~Ac---nGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~mwlmLQq~~ 243 (345)
T COG1089 167 VNYRESYGLFAC---NGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAMWLMLQQEE 243 (345)
T ss_pred eehHhhcCceee---cceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccchHHHHHHHHHHHccCC
Confidence 112223555433 244555432111 1223333444566677999999999998776
Q ss_pred CCCcEEEEeeCCc-chhhHHHHHHHHhhh
Q 028525 178 QTGLIFEVVNGEE-KVSDWKKCFSRLMEK 205 (208)
Q Consensus 178 ~~~~~~~i~~~~~-~~~e~~~~~~~~~~~ 205 (208)
...|.++.|.. +++|++++..+..|+
T Consensus 244 --PddyViATg~t~sVrefv~~Af~~~g~ 270 (345)
T COG1089 244 --PDDYVIATGETHSVREFVELAFEMVGI 270 (345)
T ss_pred --CCceEEecCceeeHHHHHHHHHHHcCc
Confidence 46899988886 999999988888774
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-11 Score=93.53 Aligned_cols=166 Identities=8% Similarity=0.018 Sum_probs=102.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----hc--CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----SF--GTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~~--~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.+...+ .. +.++.++.+|++|.+++.++++ ++|+||++++
T Consensus 13 GasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~vi~~Ag 92 (287)
T PRK06194 13 GAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAVHLLFNNAG 92 (287)
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 468999999999999999999999998654221 11 2357789999999999988876 3699998722
Q ss_pred ----Cch--------------------------hhhhhhcCC------CeEEEeceeeeccCCCCcccccchhHHHhHHH
Q 028525 75 ----GFI--------------------------SNAGSLKGV------QHVILLSQLSVYRGSGGIQALMKGNARKLAEQ 118 (208)
Q Consensus 75 ----~~~--------------------------~~a~~~~gv------~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~ 118 (208)
+.. ...+.+.+. .++|++||...+.+..+..+|...++ ..+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sK~--a~~~ 170 (287)
T PRK06194 93 VGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAPPAMGIYNVSKH--AVVS 170 (287)
T ss_pred CCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCCCcchHHHHH--HHHH
Confidence 100 011333333 58999999877654444455655332 2111
Q ss_pred -HHHH---HH--hcCCCEEEEeccccccCCCCc---ccee-eecCCc---------------CCCcccHHHHHHHHHHHh
Q 028525 119 -DESM---LM--ASGIPYTIIRTGVLQNTPGGK---QGFQ-FEEGCA---------------ANGSLSKEDAAFICVEAL 173 (208)
Q Consensus 119 -~e~~---l~--~~~~~~tivRp~~~~~~~~~~---~~~~-~~~~~~---------------~~~~v~~~Dva~~~~~~l 173 (208)
++.+ +. ..++++..+.||++....... .... .+.+.+ ..+.++.+|+|+.++.++
T Consensus 171 ~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dva~~i~~~~ 250 (287)
T PRK06194 171 LTETLYQDLSLVTDQVGASVLCPYFVPTGIWQSERNRPADLANTAPPTRSQLIAQAMSQKAVGSGKVTAEEVAQLVFDAI 250 (287)
T ss_pred HHHHHHHHHhhcCCCeEEEEEEeCcccCccccccccCchhcccCccccchhhHHHHHHHhhhhccCCCHHHHHHHHHHHH
Confidence 1111 11 235778889998874322110 1111 111000 123478899999999988
Q ss_pred hC
Q 028525 174 ES 175 (208)
Q Consensus 174 ~~ 175 (208)
..
T Consensus 251 ~~ 252 (287)
T PRK06194 251 RA 252 (287)
T ss_pred Hc
Confidence 53
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-11 Score=91.77 Aligned_cols=181 Identities=12% Similarity=0.015 Sum_probs=109.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh-h------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA-M------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-~------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|+++.|+.... . ...+.++.++.+|++|++++.++++ +.|++|+++
T Consensus 12 G~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a 91 (245)
T PRK12937 12 GASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFGRIDVLVNNA 91 (245)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4689999999999999999998888764321 1 1123468899999999999988876 579999873
Q ss_pred CC----c----------------------hhhhh-hh-cCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHH
Q 028525 74 EG----F----------------------ISNAG-SL-KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 74 ~~----~----------------------~~~a~-~~-~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
+. . ...++ .. ....+||++||.....+..+...|...+... +.+.....+
T Consensus 92 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~~~~~~a~~~ 171 (245)
T PRK12937 92 GVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALPLPGYGPYAASKAAVEGLVHVLANEL 171 (245)
T ss_pred CCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCCCCCCchhHHHHHHHHHHHHHHHHHh
Confidence 21 0 00111 11 1224899999877655443444555433211 111111123
Q ss_pred HhcCCCEEEEeccccccCCCCc--ccee---eecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGK--QGFQ---FEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~--~~~~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
...+++++.++||++....... .... +........+.+.+|+|+++..++.++.. .++.+++.++
T Consensus 172 ~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 243 (245)
T PRK12937 172 RGRGITVNAVAPGPVATELFFNGKSAEQIDQLAGLAPLERLGTPEEIAAAVAFLAGPDGAWVNGQVLRVNGG 243 (245)
T ss_pred hhcCeEEEEEEeCCccCchhcccCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCccccEEEeCCC
Confidence 3468999999999875432111 0000 00111223455789999999988865542 3677777643
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-11 Score=93.29 Aligned_cols=180 Identities=13% Similarity=0.100 Sum_probs=112.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~ 75 (208)
++|.||++++++|+++|++|++++|+.++.... .+.++.++.+|+.|++++..+++ .+|++|++++.
T Consensus 18 as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~ag~ 97 (278)
T PRK08277 18 GGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPCDILINGAGG 97 (278)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 589999999999999999999999987543211 12357889999999998887764 57999987320
Q ss_pred -------------------c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccch
Q 028525 76 -------------------F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKG 110 (208)
Q Consensus 76 -------------------~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~ 110 (208)
. ....+...+..+||++||...+.+..+...|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~~s 177 (278)
T PRK08277 98 NHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAFTPLTKVPAYSAA 177 (278)
T ss_pred CCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcCCCCCCchhHHH
Confidence 0 0112333456789999999877654444555553
Q ss_pred hHHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCcc-----c-e--e---eecCCcCCCcccHHHHHHHHHHHhhC-C
Q 028525 111 NARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQ-----G-F--Q---FEEGCAANGSLSKEDAAFICVEALES-I 176 (208)
Q Consensus 111 ~~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~-----~-~--~---~~~~~~~~~~v~~~Dva~~~~~~l~~-~ 176 (208)
++-. +.+.....+...++++..|+||.+........ . . . +........+...+|+|++++.++.. .
T Consensus 178 K~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s~~~ 257 (278)
T PRK08277 178 KAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTERANKILAHTPMGRFGKPEELLGTLLWLADEKA 257 (278)
T ss_pred HHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhHHHHHhccCCccCCCCHHHHHHHHHHHcCccc
Confidence 3211 11111112223589999999999864321100 0 0 0 00001112344679999999998876 3
Q ss_pred C--CCCcEEEEeeC
Q 028525 177 P--QTGLIFEVVNG 188 (208)
Q Consensus 177 ~--~~~~~~~i~~~ 188 (208)
. ..++.+.+.+|
T Consensus 258 ~~~~tG~~i~vdgG 271 (278)
T PRK08277 258 SSFVTGVVLPVDGG 271 (278)
T ss_pred cCCcCCCEEEECCC
Confidence 3 24677777644
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-11 Score=93.40 Aligned_cols=180 Identities=13% Similarity=0.044 Sum_probs=109.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||+++++.|+++|++|++++|+.++.... .+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 9 Gas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 88 (256)
T PRK08643 9 GAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLNVVVNNAG 88 (256)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 5799999999999999999999999987652211 12467889999999998888775 4799998732
Q ss_pred C----ch--------------------------hhhhhhcC-CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 75 G----FI--------------------------SNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 75 ~----~~--------------------------~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
. .. ...+...+ -.+||++||.....+......|...+... +.+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~ 168 (256)
T PRK08643 89 VAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGNPELAVYSSTKFAVRGLTQTAAR 168 (256)
T ss_pred CCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCCCCCchhHHHHHHHHHHHHHHHH
Confidence 1 00 01122222 35899999886554333344555433211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCc----------cceee-----ecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEE
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGK----------QGFQF-----EEGCAANGSLSKEDAAFICVEALESIP--QTGLIFE 184 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~----------~~~~~-----~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~ 184 (208)
.+...+++++.|+||++....... ....+ ............+|+|.++..++.++. ..|+.+.
T Consensus 169 e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~L~~~~~~~~~G~~i~ 248 (256)
T PRK08643 169 DLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKDITLGRLSEPEDVANCVSFLAGPDSDYITGQTII 248 (256)
T ss_pred HhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhccCCCCCCcCHHHHHHHHHHHhCccccCccCcEEE
Confidence 233468999999999875421110 00000 000011234567999999998886543 3456666
Q ss_pred Eee
Q 028525 185 VVN 187 (208)
Q Consensus 185 i~~ 187 (208)
+.+
T Consensus 249 vdg 251 (256)
T PRK08643 249 VDG 251 (256)
T ss_pred eCC
Confidence 653
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-11 Score=91.98 Aligned_cols=181 Identities=14% Similarity=0.055 Sum_probs=109.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh-h----hh--cCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA-M----ES--FGTYVESMAGDASNKKFLKTALRG-------VRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-~----~~--~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|+++.|+.++. . .. .+.++..+.+|+.|++++.++++. .|++|+++
T Consensus 15 G~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~a 94 (254)
T PRK06114 15 GAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELGALTLAVNAA 94 (254)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3588999999999999999999999975431 1 11 134578899999999988877753 59999873
Q ss_pred CC----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCC--CcccccchhHH--HhHHHH
Q 028525 74 EG----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSG--GIQALMKGNAR--KLAEQD 119 (208)
Q Consensus 74 ~~----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~--~~~~~~~~~~~--~~~~~~ 119 (208)
+. . ....+...+..+||++||........ +...|...++- .+.+..
T Consensus 95 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~Y~~sKaa~~~l~~~l 174 (254)
T PRK06114 95 GIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNRGLLQAHYNASKAGVIHLSKSL 174 (254)
T ss_pred CCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCCCCcchHHHHHHHHHHHHHHH
Confidence 21 0 01123345556899999876543221 12344442221 111111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCccce-----eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGKQGF-----QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
...+...++++.+|+||++.......... .+....+.......+|+|..++.++.+.. ..|+++.+.+|
T Consensus 175 a~e~~~~gi~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s~~~~~~tG~~i~~dgg 250 (254)
T PRK06114 175 AMEWVGRGIRVNSISPGYTATPMNTRPEMVHQTKLFEEQTPMQRMAKVDEMVGPAVFLLSDAASFCTGVDLLVDGG 250 (254)
T ss_pred HHHHhhcCeEEEEEeecCccCcccccccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCcCCceEEECcC
Confidence 12233578999999999875432211100 00011111234467999999999886543 24677766643
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-11 Score=89.43 Aligned_cols=192 Identities=12% Similarity=0.113 Sum_probs=129.7
Q ss_pred CchhhhccccCccHHHHHHHHHhCCC--cEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC--CCEEEEc---C
Q 028525 1 MGPMKKMKRKKMNFRMVILSLIVKRT--RIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG--VRSIICP---S 73 (208)
Q Consensus 1 ~~~~~~~~~~G~iG~~l~~~Ll~~g~--~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~---~ 73 (208)
|.++++.+++|.+|+++.+.+.++|. +=.++. ..-.+||++.++..+.|+. ..+||++ .
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~--------------~skd~DLt~~a~t~~lF~~ekPthVIhlAAmV 66 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFI--------------GSKDADLTNLADTRALFESEKPTHVIHLAAMV 66 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEe--------------ccccccccchHHHHHHHhccCCceeeehHhhh
Confidence 44566778999999999999998875 222221 1225799999999988864 5788865 3
Q ss_pred CCc--------------------hhhhhhhcCCCeEEEeceeeeccCC------------CCccc--ccchhHHHhHH-H
Q 028525 74 EGF--------------------ISNAGSLKGVQHVILLSQLSVYRGS------------GGIQA--LMKGNARKLAE-Q 118 (208)
Q Consensus 74 ~~~--------------------~~~a~~~~gv~~~v~~Ss~~~~~~~------------~~~~~--~~~~~~~~~~~-~ 118 (208)
+|. ....|-+.|+++++++-|.+.++.. .|+.+ +..+.+|+... +
T Consensus 67 GGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gYsyAKr~idv~ 146 (315)
T KOG1431|consen 67 GGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYSYAKRMIDVQ 146 (315)
T ss_pred cchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHHHHHHHHHHHH
Confidence 442 2334677899999999888887521 11211 11123444332 2
Q ss_pred HHHHHHhcCCCEEEEeccccccCCC------------------------CccceeeecCCcCCCcccHHHHHHHHHHHhh
Q 028525 119 DESMLMASGIPYTIIRTGVLQNTPG------------------------GKQGFQFEEGCAANGSLSKEDAAFICVEALE 174 (208)
Q Consensus 119 ~e~~l~~~~~~~tivRp~~~~~~~~------------------------~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~ 174 (208)
...|-.+.|.++|.+-|+.+++... ......|+.+.+...+++.+|+|+++++++.
T Consensus 147 n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l~i~vlr 226 (315)
T KOG1431|consen 147 NQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADLFIWVLR 226 (315)
T ss_pred HHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHHHHHHHH
Confidence 3345556899999999999986421 0112235666666788999999999999986
Q ss_pred CCCCCCcEEEEeeCC--c-chhhHHHHHHHHhhhcC
Q 028525 175 SIPQTGLIFEVVNGE--E-KVSDWKKCFSRLMEKTG 207 (208)
Q Consensus 175 ~~~~~~~~~~i~~~~--~-~~~e~~~~~~~~~~~~~ 207 (208)
+=.. -+-++++.+. + +++|+++++.++.+-.+
T Consensus 227 ~Y~~-vEpiils~ge~~EVtI~e~aeaV~ea~~F~G 261 (315)
T KOG1431|consen 227 EYEG-VEPIILSVGESDEVTIREAAEAVVEAVDFTG 261 (315)
T ss_pred hhcC-ccceEeccCccceeEHHHHHHHHHHHhCCCc
Confidence 5332 2446666655 3 99999999999887654
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.7e-11 Score=91.70 Aligned_cols=183 Identities=16% Similarity=0.067 Sum_probs=110.9
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCch-hhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKR-NAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~-~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
.+++|.||++++++|+++|++|+++.|+.. .... ..+.++.++.+|++|++++.++++ ..|++|++
T Consensus 8 tGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ 87 (256)
T PRK12743 8 TASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRIDVLVNN 87 (256)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 357999999999999999999998876443 2211 123468899999999998877764 46999987
Q ss_pred CCC----c----------------------hhhh----hhhcC-CCeEEEeceeeeccCCCCcccccchhHHH--hHHHH
Q 028525 73 SEG----F----------------------ISNA----GSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 73 ~~~----~----------------------~~~a----~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~ 119 (208)
++. . +.++ +.+.+ -++||++||.....+..+...|...++.. +.+..
T Consensus 88 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a~~~l~~~l 167 (256)
T PRK12743 88 AGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTPLPGASAYTAAKHALGGLTKAM 167 (256)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccCCCCCcchhHHHHHHHHHHHHHH
Confidence 321 0 0011 21222 35899999987655444444555433211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCcc--ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGKQ--GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~~--~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
-..+...+++++.|+||.+........ .. ............+.+|+|.++..++.... ..+..+.+.+|.
T Consensus 168 a~~~~~~~i~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~~dgg~ 243 (256)
T PRK12743 168 ALELVEHGILVNAVAPGAIATPMNGMDDSDVKPDSRPGIPLGRPGDTHEIASLVAWLCSEGASYTTGQSLIVDGGF 243 (256)
T ss_pred HHHhhhhCeEEEEEEeCCccCccccccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 122334689999999998854321110 00 00011112334577999999988886544 246777776554
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.4e-11 Score=91.21 Aligned_cols=181 Identities=13% Similarity=0.085 Sum_probs=111.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-hh---hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-AM---ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE-- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~---~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~-- 74 (208)
++++.||++++++|+++|++|+++.|+... .. +..+.++.++.+|++|.+++.++++ ..|++|++++
T Consensus 15 Gas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~lv~~ag~~ 94 (251)
T PRK12481 15 GCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHIDILINNAGII 94 (251)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 468999999999999999999999886533 11 1123468889999999999988875 4699998732
Q ss_pred --Cc--------------------------hhhhhhhcC-CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHH
Q 028525 75 --GF--------------------------ISNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 75 --~~--------------------------~~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
+. ....+.+.+ -.+||++||...+.+......|...++-. +.+.....+
T Consensus 95 ~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~asK~a~~~l~~~la~e~ 174 (251)
T PRK12481 95 RRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGIRVPSYTASKSAVMGLTRALATEL 174 (251)
T ss_pred CCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 10 001122333 35899999987665443344565533211 111112234
Q ss_pred HhcCCCEEEEeccccccCCCCcc---ce---eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQ---GF---QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~---~~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
...++++..|+||++........ .. .+....+...+...+|+|+++..++.+.. ..|+.+.+.+|
T Consensus 175 ~~~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~peeva~~~~~L~s~~~~~~~G~~i~vdgg 247 (251)
T PRK12481 175 SQYNINVNAIAPGYMATDNTAALRADTARNEAILERIPASRWGTPDDLAGPAIFLSSSASDYVTGYTLAVDGG 247 (251)
T ss_pred hhcCeEEEEEecCCCccCchhhcccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCcCCceEEECCC
Confidence 45799999999999854321110 00 00000112334577999999999887543 34666666543
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.7e-11 Score=92.15 Aligned_cols=182 Identities=13% Similarity=0.018 Sum_probs=113.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|+++.|+.++..+. .+.++.++.+|++|.+++.+++. ..|++|++++
T Consensus 17 Ga~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag 96 (265)
T PRK07097 17 GASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVIDILVNNAG 96 (265)
T ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 4689999999999999999999999987653211 13358889999999999888874 3699998722
Q ss_pred C----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHH
Q 028525 75 G----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESM 122 (208)
Q Consensus 75 ~----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 122 (208)
. . ....+.+.+..+||++||........+...|...++- .+.+...+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaal~~l~~~la~e 176 (265)
T PRK07097 97 IIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASE 176 (265)
T ss_pred CCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 1 0 0112334566799999987544333344455553321 111111122
Q ss_pred HHhcCCCEEEEeccccccCCCCc-cc-------eee----ecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGK-QG-------FQF----EEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~-~~-------~~~----~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+...+++++.|+||.+....... .. ..+ ........+...+|+|..+..++.++. ..++.+.+.+|
T Consensus 177 ~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg 256 (265)
T PRK07097 177 YGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKTPAARWGDPEDLAGPAVFLASDASNFVNGHILYVDGG 256 (265)
T ss_pred hhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcCCccCCcCHHHHHHHHHHHhCcccCCCCCCEEEECCC
Confidence 33468999999999985432111 00 000 000111234567999999999987643 34677776655
Q ss_pred C
Q 028525 189 E 189 (208)
Q Consensus 189 ~ 189 (208)
.
T Consensus 257 ~ 257 (265)
T PRK07097 257 I 257 (265)
T ss_pred c
Confidence 4
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-11 Score=93.22 Aligned_cols=182 Identities=11% Similarity=0.022 Sum_probs=113.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALRG-------VRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~~ 74 (208)
+.+|.||++++++|+++|++|+++.|+.++... ..+.++.++.+|++|.+++.++++. .|++|++++
T Consensus 14 Gas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag 93 (253)
T PRK06172 14 GGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRLDYAFNNAG 93 (253)
T ss_pred CCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 469999999999999999999999998765321 1234688999999999988887753 599998722
Q ss_pred -----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 75 -----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 75 -----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
... ...+.+.+..++|++||...+.+..+...|...++.. +.+....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sKaa~~~~~~~la~ 173 (253)
T PRK06172 94 IEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAPKMSIYAASKHAVIGLTKSAAI 173 (253)
T ss_pred CCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCCCCchhHHHHHHHHHHHHHHHH
Confidence 100 0112334556899999987765544444554433211 1111111
Q ss_pred HHHhcCCCEEEEeccccccCCCCc----ccee---eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGK----QGFQ---FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~----~~~~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.+...++++..++||.+....... .... +..........+.+|++..++.++.+.. ..|+.+.+.+|.
T Consensus 174 e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~~~~~l~~~~~~~~~G~~i~~dgg~ 250 (253)
T PRK06172 174 EYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMHPVGRIGKVEEVASAVLYLCSDGASFTTGHALMVDGGA 250 (253)
T ss_pred HhcccCeEEEEEEeCCccChhhhhhcccChHHHHHHhccCCCCCccCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 122358999999999874322110 0000 0001112334578999999999987653 357777777553
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-11 Score=94.23 Aligned_cols=181 Identities=13% Similarity=0.070 Sum_probs=108.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++.... .+.++.++.+|++|++++.++++ +.|+||++++
T Consensus 19 Ga~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~id~vi~~ag 98 (259)
T PRK08213 19 GGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHVDILVNNAG 98 (259)
T ss_pred CCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 4589999999999999999999999987653211 12357889999999999976653 4799998732
Q ss_pred C----c----------------------hhhhh-----hhcCCCeEEEeceeeeccCCCC----cccccchhHHH--hHH
Q 028525 75 G----F----------------------ISNAG-----SLKGVQHVILLSQLSVYRGSGG----IQALMKGNARK--LAE 117 (208)
Q Consensus 75 ~----~----------------------~~~a~-----~~~gv~~~v~~Ss~~~~~~~~~----~~~~~~~~~~~--~~~ 117 (208)
. . +.+++ ...+.++||++||...+....+ ..+|...++.. +.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~~~~~~~~Y~~sKa~~~~~~~ 178 (259)
T PRK08213 99 ATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPEVMDTIAYNTSKGAVINFTR 178 (259)
T ss_pred CCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCccccCcchHHHHHHHHHHHHH
Confidence 1 0 11112 2236679999999765543222 13343322110 111
Q ss_pred HHHHHHHhcCCCEEEEeccccccCCCCcc--ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 118 QDESMLMASGIPYTIIRTGVLQNTPGGKQ--GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 118 ~~e~~l~~~~~~~tivRp~~~~~~~~~~~--~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
...+.+...+++++.++|+++........ .+ .+........+...+|+|..+..++.... ..|+.+.+.++
T Consensus 179 ~~a~~~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~~ 255 (259)
T PRK08213 179 ALAAEWGPHGIRVNAIAPGFFPTKMTRGTLERLGEDLLAHTPLGRLGDDEDLKGAALLLASDASKHITGQILAVDGG 255 (259)
T ss_pred HHHHHhcccCEEEEEEecCcCCCcchhhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 11122223689999999998754321110 00 00001111223356999999888876543 24677776643
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-11 Score=93.38 Aligned_cols=169 Identities=11% Similarity=0.041 Sum_probs=104.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-----cCCceEEEEcCCCCHHHHHHHhc------CCCEEEEcCCCc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-----FGTYVESMAGDASNKKFLKTALR------GVRSIICPSEGF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-----~~~~v~~v~~Dl~d~~~l~~~~~------~~d~vi~~~~~~ 76 (208)
+++|.||++++++|+++|++|++++|+.++.... .+.++.++.+|+.|++++.++++ .+|++|++++..
T Consensus 12 G~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~lv~~ag~~ 91 (263)
T PRK09072 12 GASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVLINNAGVN 91 (263)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 4689999999999999999999999987653222 13468899999999998877764 469999873210
Q ss_pred --------------------------hh----hhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHH
Q 028525 77 --------------------------IS----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLM 124 (208)
Q Consensus 77 --------------------------~~----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~ 124 (208)
+. ..+...+..++|++||.....+......|...++.. +.+.....+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~l~~~~~ 171 (263)
T PRK09072 92 HFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGYPGYASYCASKFALRGFSEALRRELA 171 (263)
T ss_pred CccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 00 112234456889998875543322233344432211 1111111222
Q ss_pred hcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 125 ASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
..++.++.+.||.+........ .............+.+|+|+.++.+++++.
T Consensus 172 ~~~i~v~~v~Pg~~~t~~~~~~-~~~~~~~~~~~~~~~~~va~~i~~~~~~~~ 223 (263)
T PRK09072 172 DTGVRVLYLAPRATRTAMNSEA-VQALNRALGNAMDDPEDVAAAVLQAIEKER 223 (263)
T ss_pred ccCcEEEEEecCcccccchhhh-cccccccccCCCCCHHHHHHHHHHHHhCCC
Confidence 4689999999998743321110 100000111235678999999999998653
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-10 Score=89.62 Aligned_cols=181 Identities=11% Similarity=0.029 Sum_probs=111.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------c--CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------F--GTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~--~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||+++++.|+++|++|++++|+.++..+. . +.++.++.+|+.|.+++.++++ +.|++|++
T Consensus 16 Ga~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ 95 (257)
T PRK09242 16 GASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWDGLHILVNN 95 (257)
T ss_pred CCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3589999999999999999999999987653221 1 2357888999999888766654 46999987
Q ss_pred CCC----c----------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 73 SEG----F----------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 73 ~~~----~----------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
++. . . ...+++.+.++||++||...+.+..+...|...+... +.+...
T Consensus 96 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~la 175 (257)
T PRK09242 96 AGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHVRSGAPYGMTKAALLQMTRNLA 175 (257)
T ss_pred CCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCCCCCcchHHHHHHHHHHHHHHH
Confidence 321 0 0 1123345567999999987765444445555433111 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc---ceee---ecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ---GFQF---EEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~---~~~~---~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..+...+++++.++||++........ .... ............+|++.++..++.+.. ..++.+.+.++
T Consensus 176 ~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~~gg 251 (257)
T PRK09242 176 VEWAEDGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTPMRRVGEPEEVAAAVAFLCMPAASYITGQCIAVDGG 251 (257)
T ss_pred HHHHHhCeEEEEEEECCCCCcccccccCChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 22344689999999998854321110 0000 000111223456999999998886543 23677766544
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=96.36 Aligned_cols=131 Identities=18% Similarity=0.225 Sum_probs=92.8
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCchh------hh----------hhcCCceEEEEcCCC------CHHHHHHHhc
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKRN------AM----------ESFGTYVESMAGDAS------NKKFLKTALR 64 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~------~~----------~~~~~~v~~v~~Dl~------d~~~l~~~~~ 64 (208)
+.|||+|.+|+++|+.+- .+|++++|..+. +. +...++++++.+|+. +..++.++.+
T Consensus 7 GATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~~~~La~ 86 (382)
T COG3320 7 GATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERTWQELAE 86 (382)
T ss_pred cCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHHHHHHhh
Confidence 579999999999999876 499999997662 11 123468999999998 4778888888
Q ss_pred CCCEEEEcCC--Cc-----------------hhhhhhhcCCCeEEEeceeeeccCC---------C-----------Ccc
Q 028525 65 GVRSIICPSE--GF-----------------ISNAGSLKGVQHVILLSQLSVYRGS---------G-----------GIQ 105 (208)
Q Consensus 65 ~~d~vi~~~~--~~-----------------~~~a~~~~gv~~~v~~Ss~~~~~~~---------~-----------~~~ 105 (208)
.+|.|||+.. .+ ....|.....|.+.|+||++++... . ...
T Consensus 87 ~vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (382)
T COG3320 87 NVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPTRNVGQGLAG 166 (382)
T ss_pred hcceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCccccccccccccccCccCC
Confidence 8999998722 10 2233445567889999999987521 0 012
Q ss_pred cccchhHHHhHHHHHHHHHh---cCCCEEEEeccccccCCC
Q 028525 106 ALMKGNARKLAEQDESMLMA---SGIPYTIIRTGVLQNTPG 143 (208)
Q Consensus 106 ~~~~~~~~~~~~~~e~~l~~---~~~~~tivRp~~~~~~~~ 143 (208)
+|.. .|. .+|..+++ .|++++|+|||.+.+...
T Consensus 167 GY~~--SKw---vaE~Lvr~A~~rGLpv~I~Rpg~I~gds~ 202 (382)
T COG3320 167 GYGR--SKW---VAEKLVREAGDRGLPVTIFRPGYITGDSR 202 (382)
T ss_pred Ccch--hHH---HHHHHHHHHhhcCCCeEEEecCeeeccCc
Confidence 3333 222 35666664 489999999999986554
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.8e-11 Score=91.81 Aligned_cols=176 Identities=12% Similarity=0.076 Sum_probs=110.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----Cc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE----GF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----~~ 76 (208)
+++|.||++++++|+++|++|+++.|+.... ..+.++.+|++|++++.++++ .+|++|++++ +.
T Consensus 13 Gas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~-----~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~~Ag~~~~~~ 87 (258)
T PRK06398 13 GGSQGIGKAVVNRLKEEGSNVINFDIKEPSY-----NDVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVNNAGIESYGA 87 (258)
T ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCcccc-----CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 4589999999999999999999999986542 257889999999999888775 5799998722 10
Q ss_pred ----------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHh--cCC
Q 028525 77 ----------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMA--SGI 128 (208)
Q Consensus 77 ----------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~--~~~ 128 (208)
+ ...+.+.+..+||++||...+.+..+...|...++.... .++.+-.+ ..+
T Consensus 88 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaal~~-~~~~la~e~~~~i 166 (258)
T PRK06398 88 IHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAVTRNAAAYVTSKHAVLG-LTRSIAVDYAPTI 166 (258)
T ss_pred cccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccCCCCCchhhhhHHHHHH-HHHHHHHHhCCCC
Confidence 0 112333456799999998776544444556553321110 11111111 248
Q ss_pred CEEEEeccccccCCCCc--------ccee-------eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 129 PYTIIRTGVLQNTPGGK--------QGFQ-------FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~~--------~~~~-------~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
+++.|+||++....... .... +............+|+|++++.++..+. ..++.+.+.+|.
T Consensus 167 ~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~eva~~~~~l~s~~~~~~~G~~i~~dgg~ 244 (258)
T PRK06398 167 RCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREWGEMHPMKRVGKPEEVAYVVAFLASDLASFITGECVTVDGGL 244 (258)
T ss_pred EEEEEecCCccchHHhhhhhccccCChhhhHHHHHhhhhcCCcCCCcCHHHHHHHHHHHcCcccCCCCCcEEEECCcc
Confidence 99999999874321100 0000 0000111223467999999999887543 246777776553
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.1e-11 Score=89.54 Aligned_cols=177 Identities=11% Similarity=0.068 Sum_probs=109.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCH-HHHHHHhcCCCEEEEcCC-----Cch----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNK-KFLKTALRGVRSIICPSE-----GFI---- 77 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~-~~l~~~~~~~d~vi~~~~-----~~~---- 77 (208)
+++|.||++++++|+++|++|+++.|+..... ..++.++.+|++|+ +.+.+.+..+|++|++++ ...
T Consensus 12 Gas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~ 88 (235)
T PRK06550 12 GAASGIGLAQARAFLAQGAQVYGVDKQDKPDL---SGNFHFLQLDLSDDLEPLFDWVPSVDILCNTAGILDDYKPLLDTS 88 (235)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCccccc---CCcEEEEECChHHHHHHHHHhhCCCCEEEECCCCCCCCCCcccCC
Confidence 46899999999999999999999999865422 34688999999997 555555567899998732 110
Q ss_pred ------------------h----hhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHHHHhcCCCEEEE
Q 028525 78 ------------------S----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESMLMASGIPYTII 133 (208)
Q Consensus 78 ------------------~----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~l~~~~~~~tiv 133 (208)
. ..+.+.+..+||++||.....+......|...++- .+.+..-..+...+++++.+
T Consensus 89 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v 168 (235)
T PRK06550 89 LEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAGGGGAAYTASKHALAGFTKQLALDYAKDGIQVFGI 168 (235)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEE
Confidence 0 11223445689999998765433334455543321 11111112233468999999
Q ss_pred eccccccCCCCcccee-------eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 134 RTGVLQNTPGGKQGFQ-------FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 134 Rp~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+||++..... ...+. +........+.+.+|+|++++.++.++. ..++.+.+.+|
T Consensus 169 ~pg~v~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~s~~~~~~~g~~~~~~gg 231 (235)
T PRK06550 169 APGAVKTPMT-AADFEPGGLADWVARETPIKRWAEPEEVAELTLFLASGKADYMQGTIVPIDGG 231 (235)
T ss_pred eeCCccCccc-ccccCchHHHHHHhccCCcCCCCCHHHHHHHHHHHcChhhccCCCcEEEECCc
Confidence 9998854321 11110 0011112335677999999999986543 24566666543
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.2e-11 Score=91.54 Aligned_cols=180 Identities=13% Similarity=0.104 Sum_probs=110.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCch-hhh---h---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKR-NAM---E---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~-~~~---~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+.+|.||++++++|+++|++|+++.|+.. ... . ..+.++.++.+|++|.+++.++++ .+|+||+++
T Consensus 16 Gas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~iD~vi~~a 95 (258)
T PRK09134 16 GAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALGPITLLVNNA 95 (258)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 46999999999999999999998876532 211 1 123468889999999999888775 369999873
Q ss_pred CC----c----------------------hhhh----hhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHH
Q 028525 74 EG----F----------------------ISNA----GSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESML 123 (208)
Q Consensus 74 ~~----~----------------------~~~a----~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l 123 (208)
+. . +.++ +...+-+++|+++|...+.+.....+|... |...+...+.+
T Consensus 96 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~p~~~~Y~~s--K~a~~~~~~~l 173 (258)
T PRK09134 96 SLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLNPDFLSYTLS--KAALWTATRTL 173 (258)
T ss_pred cCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCCCCchHHHHH--HHHHHHHHHHH
Confidence 21 0 0011 122334578888876554332222345543 32221111222
Q ss_pred H-h--cCCCEEEEeccccccCCCCcc-cee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC
Q 028525 124 M-A--SGIPYTIIRTGVLQNTPGGKQ-GFQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE 189 (208)
Q Consensus 124 ~-~--~~~~~tivRp~~~~~~~~~~~-~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~ 189 (208)
. + .++.++.++||.+........ .+. ...........+.+|+|++++.+++.+...++.+.+.+|.
T Consensus 174 a~~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~g~~~~i~gg~ 244 (258)
T PRK09134 174 AQALAPRIRVNAIGPGPTLPSGRQSPEDFARQHAATPLGRGSTPEEIAAAVRYLLDAPSVTGQMIAVDGGQ 244 (258)
T ss_pred HHHhcCCcEEEEeecccccCCcccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCCcCCCEEEECCCe
Confidence 2 1 248999999998754321110 000 0001111234678999999999998776678888887655
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.5e-11 Score=89.80 Aligned_cols=187 Identities=11% Similarity=0.095 Sum_probs=110.0
Q ss_pred Cchhhhc-----cccCccHHHHHHHHHhCCCcEEEEEcC-chhhhhhc-CCceEEEEcCCCCHHHHHHHhc---CCCEEE
Q 028525 1 MGPMKKM-----KRKKMNFRMVILSLIVKRTRIKALVKD-KRNAMESF-GTYVESMAGDASNKKFLKTALR---GVRSII 70 (208)
Q Consensus 1 ~~~~~~~-----~~~G~iG~~l~~~Ll~~g~~V~~~~R~-~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~---~~d~vi 70 (208)
|++|+.+ +++|.||++++++|+++|++|++..|+ .++..+.. ..++.++.+|++|.+++.+.++ ..|++|
T Consensus 1 m~~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li 80 (237)
T PRK12742 1 MGAFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILV 80 (237)
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEE
Confidence 6777443 358999999999999999999887764 33322211 1246788999999998888775 379999
Q ss_pred EcCCC----ch-----------------------hhhhhh-cCCCeEEEeceeeec-cCCCCcccccchhHHH--hHHHH
Q 028525 71 CPSEG----FI-----------------------SNAGSL-KGVQHVILLSQLSVY-RGSGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 71 ~~~~~----~~-----------------------~~a~~~-~gv~~~v~~Ss~~~~-~~~~~~~~~~~~~~~~--~~~~~ 119 (208)
++++. .. ...+.. ....++|++||.... .+..+...|...++.. +.+..
T Consensus 81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~~sKaa~~~~~~~l 160 (237)
T PRK12742 81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDRMPVAGMAAYAASKSALQGMARGL 160 (237)
T ss_pred ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccccCCCCCCcchHHhHHHHHHHHHHH
Confidence 87321 00 011111 123589999987653 2333344555433211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCcc-ce--eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEee
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGKQ-GF--QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVN 187 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~~-~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~ 187 (208)
...+...+++++.|+||.+........ .. .+........+.+.+|++.++..++.+... .|..+.+.+
T Consensus 161 a~~~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~l~s~~~~~~~G~~~~~dg 233 (237)
T PRK12742 161 ARDFGPRGITINVVQPGPIDTDANPANGPMKDMMHSFMAIKRHGRPEEVAGMVAWLAGPEASFVTGAMHTIDG 233 (237)
T ss_pred HHHHhhhCeEEEEEecCcccCCccccccHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccCcccCCEEEeCC
Confidence 122334689999999999854322111 00 000011123446789999999988865432 456666543
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.6e-11 Score=90.30 Aligned_cols=179 Identities=10% Similarity=0.069 Sum_probs=110.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcC-chhhh---hhcCCceEEEEcCCCCHHHHHHHhcC--------CCEEEEcCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKD-KRNAM---ESFGTYVESMAGDASNKKFLKTALRG--------VRSIICPSEG 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~-~~~~~---~~~~~~v~~v~~Dl~d~~~l~~~~~~--------~d~vi~~~~~ 75 (208)
+++|.||+++++.|+++|++|++..|+ .++.. ...+.++.++.+|+.|++++.++++. +|++|++++.
T Consensus 12 Gas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~id~li~~ag~ 91 (253)
T PRK08642 12 GGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKPITTVVNNALA 91 (253)
T ss_pred CCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 469999999999999999999887654 33321 11234688899999999998887753 7999987310
Q ss_pred ----------c----------------------hhh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHH-
Q 028525 76 ----------F----------------------ISN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ- 118 (208)
Q Consensus 76 ----------~----------------------~~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~- 118 (208)
. +.+ .+...+..+||++||.....+..+...|...+. ..+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~Y~~sK~--a~~~l 169 (253)
T PRK08642 92 DFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQNPVVPYHDYTTAKA--ALLGL 169 (253)
T ss_pred cccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCCCccchHHHHH--HHHHH
Confidence 0 011 123345678999998755443334445554332 2111
Q ss_pred HHH---HHHhcCCCEEEEeccccccCCCCcc--cee---eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 119 DES---MLMASGIPYTIIRTGVLQNTPGGKQ--GFQ---FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 119 ~e~---~l~~~~~~~tivRp~~~~~~~~~~~--~~~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
++. .+...+++++.|+||++........ ... +........+.+.+|+|.+++.++..+. ..|+.+.+.+|
T Consensus 170 ~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~vdgg 249 (253)
T PRK08642 170 TRNLAAELGPYGITVNMVSGGLLRTTDASAATPDEVFDLIAATTPLRKVTTPQEFADAVLFFASPWARAVTGQNLVVDGG 249 (253)
T ss_pred HHHHHHHhCccCeEEEEEeecccCCchhhccCCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHcCchhcCccCCEEEeCCC
Confidence 111 1223689999999998854321110 000 0111122446788999999999987543 34677776644
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-10 Score=90.91 Aligned_cols=182 Identities=11% Similarity=0.019 Sum_probs=110.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hc--CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SF--GTYVESMAGDASNKKFLKTALR-------GVRSIICPSE- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~--~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ .. ..++.++.+|++|.+++.++++ .+|++|++++
T Consensus 25 Gas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id~li~~Ag~ 104 (280)
T PLN02253 25 GGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTLDIMVNNAGL 104 (280)
T ss_pred CCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 358999999999999999999999987654321 11 2358899999999999988876 5799998721
Q ss_pred -----Cch----------------------hhh----hhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 75 -----GFI----------------------SNA----GSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 75 -----~~~----------------------~~a----~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
..+ .++ +...+-.++|++||............|...++.. +.+....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~ 184 (280)
T PLN02253 105 TGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGGLGPHAYTGSKHAVLGLTRSVAA 184 (280)
T ss_pred CCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccCCCCcccHHHHHHHHHHHHHHHH
Confidence 100 011 1122345788998876533222233565533211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCc---cce----e------e-ecCCcC-CCcccHHHHHHHHHHHhhCCCC--CCcEEE
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGK---QGF----Q------F-EEGCAA-NGSLSKEDAAFICVEALESIPQ--TGLIFE 184 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~---~~~----~------~-~~~~~~-~~~v~~~Dva~~~~~~l~~~~~--~~~~~~ 184 (208)
.+...+++++.++||.+....... ... . + ...... ...++.+|+|.++..++.++.. .++.+.
T Consensus 185 e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~dva~~~~~l~s~~~~~i~G~~i~ 264 (280)
T PLN02253 185 ELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNANLKGVELTVDDVANAVLFLASDEARYISGLNLM 264 (280)
T ss_pred HhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCCCCcCCCCCHHHHHHHHHhhcCcccccccCcEEE
Confidence 223468999999999985432100 000 0 0 000011 1236789999999998875432 467888
Q ss_pred EeeCC
Q 028525 185 VVNGE 189 (208)
Q Consensus 185 i~~~~ 189 (208)
+.+|.
T Consensus 265 vdgG~ 269 (280)
T PLN02253 265 IDGGF 269 (280)
T ss_pred ECCch
Confidence 87554
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.5e-11 Score=91.11 Aligned_cols=179 Identities=15% Similarity=0.086 Sum_probs=110.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.++++ ++|+||++++
T Consensus 17 GasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 17 GAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4689999999999999999999999987653221 13467889999999999887765 5799998732
Q ss_pred C----ch----------------------hhhh----h-hcCCCeEEEeceeeeccCCCCcccccchhHHHhHHH-HHHH
Q 028525 75 G----FI----------------------SNAG----S-LKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-DESM 122 (208)
Q Consensus 75 ~----~~----------------------~~a~----~-~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~e~~ 122 (208)
. .. .+++ . ..+.++||++||.....+..+..+|...++ ..+. ++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sK~--a~~~~~~~~ 174 (263)
T PRK07814 97 GTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRLAGRGFAAYGTAKA--ALAHYTRLA 174 (263)
T ss_pred CCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccCCCCCCchhHHHHH--HHHHHHHHH
Confidence 1 00 1111 1 245578999999765544444445554332 1111 1111
Q ss_pred HHh--cCCCEEEEeccccccCCCC----cccee--eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 123 LMA--SGIPYTIIRTGVLQNTPGG----KQGFQ--FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 123 l~~--~~~~~tivRp~~~~~~~~~----~~~~~--~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
-.+ ..++++.|+||.+...... ...+. +............+|+|++++.++.+.. ..++.+.+.++
T Consensus 175 ~~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~~ 250 (263)
T PRK07814 175 ALDLCPRIRVNAIAPGSILTSALEVVAANDELRAPMEKATPLRRLGDPEDIAAAAVYLASPAGSYLTGKTLEVDGG 250 (263)
T ss_pred HHHHCCCceEEEEEeCCCcCchhhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 111 3588999999987532211 00000 0000111223467999999999886542 35677777644
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.1e-11 Score=91.09 Aligned_cols=179 Identities=11% Similarity=-0.013 Sum_probs=108.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|+++.|+.++.... ...++.++.+|+++++++.++++ .+|++|++++
T Consensus 16 Gasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag 95 (258)
T PRK06949 16 GASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGTIDILVNNSG 95 (258)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4699999999999999999999999987764221 12357899999999999888875 4799998732
Q ss_pred C----ch----------------------hh----hhhhcC--------CCeEEEeceeeeccCCCCcccccchhHHH--
Q 028525 75 G----FI----------------------SN----AGSLKG--------VQHVILLSQLSVYRGSGGIQALMKGNARK-- 114 (208)
Q Consensus 75 ~----~~----------------------~~----a~~~~g--------v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~-- 114 (208)
. .. .+ .+.... ..++|++||...+.+.....+|...++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~ 175 (258)
T PRK06949 96 VSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRVLPQIGLYCMSKAAVVH 175 (258)
T ss_pred CCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCCCCCccHHHHHHHHHHH
Confidence 1 00 00 111111 35899999987665433344554432211
Q ss_pred hHHHHHHHHHhcCCCEEEEeccccccCCCCccce-----eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEe
Q 028525 115 LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGF-----QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVV 186 (208)
Q Consensus 115 ~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~ 186 (208)
+.+..-..+...++++++|+||.+.......... .+............+|++..++.++.++. ..|+.+.+.
T Consensus 176 ~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~G~~i~~d 254 (258)
T PRK06949 176 MTRAMALEWGRHGINVNAICPGYIDTEINHHHWETEQGQKLVSMLPRKRVGKPEDLDGLLLLLAADESQFINGAIISAD 254 (258)
T ss_pred HHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhcCCCCcEEEeC
Confidence 1111111123368999999999985433211100 00000011223346999999999887543 235555544
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.1e-11 Score=90.93 Aligned_cols=180 Identities=13% Similarity=0.155 Sum_probs=110.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcCCC----c
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG-------VRSIICPSEG----F 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~~~----~ 76 (208)
+++|.||++++++|+++|++|++++|+.++. ..+.++.++.+|+.|++++.++++. +|+||++++. .
T Consensus 13 Gas~gIG~~la~~l~~~g~~v~~~~r~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~ 90 (252)
T PRK07856 13 GGTRGIGAGIARAFLAAGATVVVCGRRAPET--VDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVLVNNAGGSPYAL 90 (252)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCChhhh--hcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 4689999999999999999999999987651 2234688999999999998888753 5999987321 0
Q ss_pred ----------------------hhhh----hhh-cCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHh--cC
Q 028525 77 ----------------------ISNA----GSL-KGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMA--SG 127 (208)
Q Consensus 77 ----------------------~~~a----~~~-~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~--~~ 127 (208)
..++ +.. .+..+||++||.....+......|...++.... .++.+-.+ ..
T Consensus 91 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a~~~-l~~~la~e~~~~ 169 (252)
T PRK07856 91 AAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPSPGTAAYGAAKAGLLN-LTRSLAVEWAPK 169 (252)
T ss_pred cccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCCCCCchhHHHHHHHHH-HHHHHHHHhcCC
Confidence 0011 222 234689999998776544444455543321110 11111111 23
Q ss_pred CCEEEEeccccccCCCCcc---c--e-eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCc
Q 028525 128 IPYTIIRTGVLQNTPGGKQ---G--F-QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEE 190 (208)
Q Consensus 128 ~~~tivRp~~~~~~~~~~~---~--~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~ 190 (208)
+.+..++||.+........ . . .+............+|+|++++.++..+. ..++.+.+.+|..
T Consensus 170 i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~va~~~~~L~~~~~~~i~G~~i~vdgg~~ 240 (252)
T PRK07856 170 VRVNAVVVGLVRTEQSELHYGDAEGIAAVAATVPLGRLATPADIAWACLFLASDLASYVSGANLEVHGGGE 240 (252)
T ss_pred eEEEEEEeccccChHHhhhccCHHHHHHHhhcCCCCCCcCHHHHHHHHHHHcCcccCCccCCEEEECCCcc
Confidence 8899999998753321100 0 0 00011111233467999999999887543 3477777765543
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.8e-11 Score=89.70 Aligned_cols=181 Identities=11% Similarity=0.042 Sum_probs=109.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcC-chhh----hhh--cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKD-KRNA----MES--FGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~-~~~~----~~~--~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+.+|.||++++++|+++|++|+++.+. ..+. .+. .+..+.++.+|+.|.+++.++++ ++|++|+++
T Consensus 10 G~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~a 89 (246)
T PRK12938 10 GGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGEIDVLVNNA 89 (246)
T ss_pred CCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 469999999999999999999886543 2221 111 12356778999999998887764 579999873
Q ss_pred CC----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 EG----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~~----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+. . ....+...+.++||++||.....+......|...++.. +.+...+
T Consensus 90 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~y~~sK~a~~~~~~~l~~ 169 (246)
T PRK12938 90 GITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQ 169 (246)
T ss_pred CCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCCCCCChhHHHHHHHHHHHHHHHHH
Confidence 21 0 11223456778999999876544333344454433211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCc-ccee---eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGK-QGFQ---FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~-~~~~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+...+++++.|+||.+....... .... +..........+.+|++.++..++.++. ..++.+.+.++
T Consensus 170 ~~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~g~~~~~~~g 242 (246)
T PRK12938 170 EVATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATIPVRRLGSPDEIGSIVAWLASEESGFSTGADFSLNGG 242 (246)
T ss_pred HhhhhCeEEEEEEecccCCchhhhcChHHHHHHHhcCCccCCcCHHHHHHHHHHHcCcccCCccCcEEEECCc
Confidence 233468999999999885432111 0000 0011112334567999999998886543 35677777643
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.1e-11 Score=92.00 Aligned_cols=180 Identities=12% Similarity=0.098 Sum_probs=109.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALRG-------VRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++.... ...++.++.+|++|++++.++++. +|++|++++
T Consensus 16 GasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~iD~vi~~ag 95 (264)
T PRK07576 16 GGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPIDVLVSGAA 95 (264)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3699999999999999999999999987653211 123567889999999998887653 599998732
Q ss_pred C----c----------------------hhh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 75 G----F----------------------ISN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 75 ~----~----------------------~~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
. . +.. .+++.+ .+||++||.....+......|...++-. +.+.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~-g~iv~iss~~~~~~~~~~~~Y~asK~a~~~l~~~la~e 174 (264)
T PRK07576 96 GNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPG-ASIIQISAPQAFVPMPMQAHVCAAKAGVDMLTRTLALE 174 (264)
T ss_pred CCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CEEEEECChhhccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 1 0 001 111222 5899999976554333334454422111 11111112
Q ss_pred HHhcCCCEEEEeccccccCCCCcc-----ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQ-----GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~-----~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+...+++++.++||.+.+...... .. .+............+|+|++++.++..+. ..++.+.+.++
T Consensus 175 ~~~~gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~~~gg 249 (264)
T PRK07576 175 WGPEGIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQSVPLKRNGTKQDIANAALFLASDMASYITGVVLPVDGG 249 (264)
T ss_pred hhhcCeEEEEEecccccCcHHHhhcccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhcCccCCEEEECCC
Confidence 234689999999998753221100 00 01011112345678999999999987543 24666666654
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.3e-11 Score=93.02 Aligned_cols=181 Identities=15% Similarity=0.131 Sum_probs=108.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCch--hh---hh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKR--NA---ME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~--~~---~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++..|+.+ .. .+ ..+.++.++.+|++|.+++.++++ ++|++|++
T Consensus 56 Gas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~~ 135 (294)
T PRK07985 56 GGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKALGGLDIMALV 135 (294)
T ss_pred CCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 35889999999999999999998876532 11 11 113357789999999988877654 46999977
Q ss_pred CCC-----ch----------------------hhhhh-h-cCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 73 SEG-----FI----------------------SNAGS-L-KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 73 ~~~-----~~----------------------~~a~~-~-~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
++. .+ ..++. . ..-.+||++||...+.+......|...++-. +.+..-.
T Consensus 136 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~~~~~~Y~asKaal~~l~~~la~ 215 (294)
T PRK07985 136 AGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAK 215 (294)
T ss_pred CCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCCCCcchhHHHHHHHHHHHHHHHH
Confidence 221 00 01111 1 1125899999988775444444565533211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCc----cce--eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGK----QGF--QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~----~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
.+...++++..|+||++....... ... .+............+|+|.+++.++.++.. .++.+.+.+|
T Consensus 216 el~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~r~~~pedva~~~~fL~s~~~~~itG~~i~vdgG 290 (294)
T PRK07985 216 QVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGG 290 (294)
T ss_pred HHhHhCcEEEEEECCcCccccccccCCCHHHHHHHhccCCCCCCCCHHHHHHHHHhhhChhcCCccccEEeeCCC
Confidence 233469999999999986542110 000 011111112345679999999998875442 4677776644
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-10 Score=89.24 Aligned_cols=187 Identities=10% Similarity=0.079 Sum_probs=116.0
Q ss_pred Cchhhhc-----cccCccHHHHHHHHHhCCCc-EEEEEcCchhhhh----h--cCCceEEEEcCCCCHHHHHHHhc----
Q 028525 1 MGPMKKM-----KRKKMNFRMVILSLIVKRTR-IKALVKDKRNAME----S--FGTYVESMAGDASNKKFLKTALR---- 64 (208)
Q Consensus 1 ~~~~~~~-----~~~G~iG~~l~~~Ll~~g~~-V~~~~R~~~~~~~----~--~~~~v~~v~~Dl~d~~~l~~~~~---- 64 (208)
|..|+.+ +.+|.||+.++++|+++|++ |+++.|+.++... . .+..+.++.+|++|++++.++++
T Consensus 1 ~~~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK06198 1 MGRLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADE 80 (260)
T ss_pred CCCCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 5556543 35899999999999999999 9999998654321 1 23357789999999998888764
Q ss_pred ---CCCEEEEcCCC----c----------------------hhhh----hhhcC-CCeEEEeceeeeccCCCCcccccch
Q 028525 65 ---GVRSIICPSEG----F----------------------ISNA----GSLKG-VQHVILLSQLSVYRGSGGIQALMKG 110 (208)
Q Consensus 65 ---~~d~vi~~~~~----~----------------------~~~a----~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~ 110 (208)
++|++|++.+. . +.++ +.+.+ ..+||++||...+........|...
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~s 160 (260)
T PRK06198 81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQPFLAAYCAS 160 (260)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCCCCcchhHHH
Confidence 47999987321 0 0011 12222 3579999998876544444455543
Q ss_pred hHHHhHH-HHH---HHHHhcCCCEEEEeccccccCCCCc--cce-----ee-e---cCCcCCCcccHHHHHHHHHHHhhC
Q 028525 111 NARKLAE-QDE---SMLMASGIPYTIIRTGVLQNTPGGK--QGF-----QF-E---EGCAANGSLSKEDAAFICVEALES 175 (208)
Q Consensus 111 ~~~~~~~-~~e---~~l~~~~~~~tivRp~~~~~~~~~~--~~~-----~~-~---~~~~~~~~v~~~Dva~~~~~~l~~ 175 (208)
+ ...+ .++ ..+...+++++.++||++....... ..+ .+ . ........++.+|++++++.++.+
T Consensus 161 K--~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 238 (260)
T PRK06198 161 K--GALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAATQPFGRLLDPDEVARAVAFLLSD 238 (260)
T ss_pred H--HHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhccCCccCCcCHHHHHHHHHHHcCh
Confidence 3 2211 111 1122357999999999986542110 000 00 0 011123456889999999998865
Q ss_pred CC--CCCcEEEEeeCC
Q 028525 176 IP--QTGLIFEVVNGE 189 (208)
Q Consensus 176 ~~--~~~~~~~i~~~~ 189 (208)
+. ..++.+.+.++.
T Consensus 239 ~~~~~~G~~~~~~~~~ 254 (260)
T PRK06198 239 ESGLMTGSVIDFDQSV 254 (260)
T ss_pred hhCCccCceEeECCcc
Confidence 54 357778776544
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-11 Score=92.07 Aligned_cols=180 Identities=14% Similarity=0.100 Sum_probs=105.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEE-EcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKAL-VKDKRNAMES------FGTYVESMAGDASNKKFLKTALRG-------VRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~-~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|+++ .|+.++..+. .+.++.++.+|++|++++.++++. .|+||+++
T Consensus 8 Ga~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~id~vi~~a 87 (247)
T PRK09730 8 GGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLAALVNNA 87 (247)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 568999999999999999999875 4655442211 123578899999999999888764 47999873
Q ss_pred CCc-----h----------------------hhh----hhhc---CCCeEEEeceeeeccCCC-CcccccchhHHH--hH
Q 028525 74 EGF-----I----------------------SNA----GSLK---GVQHVILLSQLSVYRGSG-GIQALMKGNARK--LA 116 (208)
Q Consensus 74 ~~~-----~----------------------~~a----~~~~---gv~~~v~~Ss~~~~~~~~-~~~~~~~~~~~~--~~ 116 (208)
+.. . ..+ +.+. ...+||++||...+.+.. ....|...++.. +.
T Consensus 88 g~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~~~~~~Y~~sK~~~~~~~ 167 (247)
T PRK09730 88 GILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAPGEYVDYAASKGAIDTLT 167 (247)
T ss_pred CCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCCCcccchHhHHHHHHHHH
Confidence 210 0 000 1111 134799999986543222 123454433211 11
Q ss_pred HHHHHHHHhcCCCEEEEeccccccCCCCcccee-----eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEee
Q 028525 117 EQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQ-----FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVN 187 (208)
Q Consensus 117 ~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~ 187 (208)
+.....+...+++++++|||.+++......... ...........+.+|+|+++..++.++. ..+..+.+.+
T Consensus 168 ~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g 245 (247)
T PRK09730 168 TGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQPEEVAQAIVWLLSDKASYVTGSFIDLAG 245 (247)
T ss_pred HHHHHHHHHhCeEEEEEEeCCCcCcccccCCCHHHHHHHHhcCCCCCCcCHHHHHHHHHhhcChhhcCccCcEEecCC
Confidence 111112334689999999999875432111000 0000111122367999999998887543 3466676654
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-10 Score=89.47 Aligned_cols=168 Identities=14% Similarity=0.036 Sum_probs=102.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh-------h----h--hcCCceEEEEcCCCCHHHHHHHhc-------CCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA-------M----E--SFGTYVESMAGDASNKKFLKTALR-------GVR 67 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-------~----~--~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d 67 (208)
+++|.||++++++|+++|++|+++.|+.++. . + ..+.++.++.+|++|++++.++++ ..|
T Consensus 13 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id 92 (273)
T PRK08278 13 GASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKAVERFGGID 92 (273)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 4699999999999999999999999976421 0 0 123457889999999999888775 579
Q ss_pred EEEEcCCC----c----------------------hhh----hhhhcCCCeEEEeceeeeccCC--CCcccccchhHHH-
Q 028525 68 SIICPSEG----F----------------------ISN----AGSLKGVQHVILLSQLSVYRGS--GGIQALMKGNARK- 114 (208)
Q Consensus 68 ~vi~~~~~----~----------------------~~~----a~~~~gv~~~v~~Ss~~~~~~~--~~~~~~~~~~~~~- 114 (208)
++|++++. . ..+ .+.+.+-.+++++||.....+. .+...|...++..
T Consensus 93 ~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~~~Y~~sK~a~~ 172 (273)
T PRK08278 93 ICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDPKWFAPHTAYTMAKYGMS 172 (273)
T ss_pred EEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccccccCCcchhHHHHHHHH
Confidence 99987321 0 001 1223344588888876533322 2334454432211
Q ss_pred -hHHHHHHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 115 -LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 115 -~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
+.+.....+...+++++.|.|+.+.+.+.... . .............+|+|+.++.++..+.
T Consensus 173 ~~~~~la~el~~~~I~v~~i~Pg~~i~t~~~~~-~-~~~~~~~~~~~~p~~va~~~~~l~~~~~ 234 (273)
T PRK08278 173 LCTLGLAEEFRDDGIAVNALWPRTTIATAAVRN-L-LGGDEAMRRSRTPEIMADAAYEILSRPA 234 (273)
T ss_pred HHHHHHHHHhhhcCcEEEEEeCCCccccHHHHh-c-ccccccccccCCHHHHHHHHHHHhcCcc
Confidence 11111112233689999999995444332111 1 1111112345678999999999987654
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-10 Score=89.09 Aligned_cols=180 Identities=13% Similarity=0.086 Sum_probs=105.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEc-Cchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVK-DKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R-~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||+++++.|+++|++|.++.+ ++++... ..+.++.++.+|++|++++.++++ .+|++|+++
T Consensus 9 Gas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~a 88 (248)
T PRK06947 9 GASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRLDALVNNA 88 (248)
T ss_pred CCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 57999999999999999999987754 4333211 113468899999999998877664 479999873
Q ss_pred C-----Cch----------------------h-hhhhhcC------CCeEEEeceeeeccC-CCCcccccchhHHH--hH
Q 028525 74 E-----GFI----------------------S-NAGSLKG------VQHVILLSQLSVYRG-SGGIQALMKGNARK--LA 116 (208)
Q Consensus 74 ~-----~~~----------------------~-~a~~~~g------v~~~v~~Ss~~~~~~-~~~~~~~~~~~~~~--~~ 116 (208)
+ ... . ..+.... -.+||++||...... ......|...+... +.
T Consensus 89 g~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~~Y~~sK~~~~~~~ 168 (248)
T PRK06947 89 GIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVDYAGSKGAVDTLT 168 (248)
T ss_pred ccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCCCCCcccHhhHHHHHHHH
Confidence 2 110 0 1111111 236999998765432 22223465533211 11
Q ss_pred HHHHHHHHhcCCCEEEEeccccccCCCCc--cce---eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEee
Q 028525 117 EQDESMLMASGIPYTIIRTGVLQNTPGGK--QGF---QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVN 187 (208)
Q Consensus 117 ~~~e~~l~~~~~~~tivRp~~~~~~~~~~--~~~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~ 187 (208)
+.....+...+++++++|||++....... ... ............+.+|+|+.++.++.++. ..|+.+.+.+
T Consensus 169 ~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~e~va~~~~~l~~~~~~~~~G~~~~~~g 246 (248)
T PRK06947 169 LGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQTPLGRAGEADEVAETIVWLLSDAASYVTGALLDVGG 246 (248)
T ss_pred HHHHHHhhhhCcEEEEEeccCcccccccccCCHHHHHHHhhcCCCCCCcCHHHHHHHHHHHcCccccCcCCceEeeCC
Confidence 11112233458999999999985432111 100 01111112234578999999999987764 3466666553
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-10 Score=89.13 Aligned_cols=180 Identities=9% Similarity=0.017 Sum_probs=107.7
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcC-chhhhh---hc----CC-ceEEEEcCCCCHHHHHHHhc-------CCCEEE
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKD-KRNAME---SF----GT-YVESMAGDASNKKFLKTALR-------GVRSII 70 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~-~~~~~~---~~----~~-~v~~v~~Dl~d~~~l~~~~~-------~~d~vi 70 (208)
-+++|.||+++++.|+++|++|+++.|+ .++..+ .. .. .+..+.+|++|++++.++++ ++|++|
T Consensus 5 tG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 84 (251)
T PRK07069 5 TGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLSVLV 84 (251)
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCccEEE
Confidence 3579999999999999999999999998 443221 11 11 24457899999999877764 469999
Q ss_pred EcCC----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHH
Q 028525 71 CPSE----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQ 118 (208)
Q Consensus 71 ~~~~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~ 118 (208)
++++ +. +...+.+.+.++||++||...+........|...++.. +.+.
T Consensus 85 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~~~~Y~~sK~a~~~~~~~ 164 (251)
T PRK07069 85 NNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAEPDYTAYNASKAAVASLTKS 164 (251)
T ss_pred ECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccCCCCCchhHHHHHHHHHHHHH
Confidence 8722 10 01234455678999999987765444444555433211 1111
Q ss_pred HHHHHHh--cCCCEEEEeccccccCCCCcccee---------eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEE
Q 028525 119 DESMLMA--SGIPYTIIRTGVLQNTPGGKQGFQ---------FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEV 185 (208)
Q Consensus 119 ~e~~l~~--~~~~~tivRp~~~~~~~~~~~~~~---------~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i 185 (208)
....+.. .+++++.++||++........... +..........+.+|+|++++.++.++. ..|+.+.+
T Consensus 165 la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~ 244 (251)
T PRK07069 165 IALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGVPLGRLGEPDDVAHAVLYLASDESRFVTGAELVI 244 (251)
T ss_pred HHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEE
Confidence 1111222 358899999998754321110000 0011111234567999999998876543 23555555
Q ss_pred e
Q 028525 186 V 186 (208)
Q Consensus 186 ~ 186 (208)
.
T Consensus 245 ~ 245 (251)
T PRK07069 245 D 245 (251)
T ss_pred C
Confidence 4
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-10 Score=89.18 Aligned_cols=178 Identities=16% Similarity=-0.008 Sum_probs=105.8
Q ss_pred CccHHHHHHHHHhCCCcEEEEEcCch-----------h---hhh---hcCCceEEEEcCCCCHHHHHHHhc-------CC
Q 028525 11 KMNFRMVILSLIVKRTRIKALVKDKR-----------N---AME---SFGTYVESMAGDASNKKFLKTALR-------GV 66 (208)
Q Consensus 11 G~iG~~l~~~Ll~~g~~V~~~~R~~~-----------~---~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~ 66 (208)
|.||++++++|+++|++|+++.|++. . ... ..+.++.++.+|++|.+++..+++ ..
T Consensus 17 ~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 96 (256)
T PRK12748 17 NGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPNRVFYAVSERLGDP 96 (256)
T ss_pred CCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhCCCC
Confidence 36999999999999999999998721 1 111 123468899999999998877664 36
Q ss_pred CEEEEcCCC----c----------------------hhhh----hhhcCCCeEEEeceeeeccCCCCcccccchhHHHh-
Q 028525 67 RSIICPSEG----F----------------------ISNA----GSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKL- 115 (208)
Q Consensus 67 d~vi~~~~~----~----------------------~~~a----~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~- 115 (208)
|+||++++. . +..+ +...+.++||++||...+.+..+...|...++...
T Consensus 97 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~ 176 (256)
T PRK12748 97 SILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGPMPDELAYAATKGAIEA 176 (256)
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCCCCCchHHHHHHHHHHH
Confidence 999987321 0 0011 12234568999999876654433444544322111
Q ss_pred -HHHHHHHHHhcCCCEEEEeccccccCCCCccce-eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 116 -AEQDESMLMASGIPYTIIRTGVLQNTPGGKQGF-QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 116 -~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+.....+...+++++.++||.+.......... .+............+|+|+.+..++.... ..++.+++.++
T Consensus 177 ~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~g 253 (256)
T PRK12748 177 FTKSLAPELAEKGITVNAVNPGPTDTGWITEELKHHLVPKFPQGRVGEPVDAARLIAFLVSEEAKWITGQVIHSEGG 253 (256)
T ss_pred HHHHHHHHHHHhCeEEEEEEeCcccCCCCChhHHHhhhccCCCCCCcCHHHHHHHHHHHhCcccccccCCEEEecCC
Confidence 111111233468999999999875432111100 00011111233467999999988876543 24777777643
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.4e-11 Score=90.86 Aligned_cols=181 Identities=13% Similarity=0.116 Sum_probs=110.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------c-CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------F-GTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~-~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++++|+.++..+. . +.++.++.+|++|.+++.++++ .+|++|++
T Consensus 15 Gas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~ 94 (265)
T PRK07062 15 GGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFGGVDMLVNN 94 (265)
T ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 4689999999999999999999999987653211 1 1257788999999998877653 46999987
Q ss_pred CCC----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHH
Q 028525 73 SEG----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDE 120 (208)
Q Consensus 73 ~~~----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e 120 (208)
++. . +...+++.+..+||++||.....+......|...++. .+.+...
T Consensus 95 Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~y~asKaal~~~~~~la 174 (265)
T PRK07062 95 AGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPEPHMVATSAARAGLLNLVKSLA 174 (265)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCCCCchHhHHHHHHHHHHHHHHH
Confidence 321 0 0112334455699999998765433333344433221 1111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc-------ceeee---------cCCcCCCcccHHHHHHHHHHHhhCCC--CCCcE
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ-------GFQFE---------EGCAANGSLSKEDAAFICVEALESIP--QTGLI 182 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~-------~~~~~---------~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~ 182 (208)
..+...+++++.|+||++........ ...+. ...+.......+|+|.+++.++.+.. ..|+.
T Consensus 175 ~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~~va~~~~~L~s~~~~~~tG~~ 254 (265)
T PRK07062 175 TELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKKGIPLGRLGRPDEAARALFFLASPLSSYTTGSH 254 (265)
T ss_pred HHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcCCCCcCCCCCHHHHHHHHHHHhCchhcccccce
Confidence 22345789999999998854321110 00000 00111223466999999999886433 34677
Q ss_pred EEEeeC
Q 028525 183 FEVVNG 188 (208)
Q Consensus 183 ~~i~~~ 188 (208)
+.+.+|
T Consensus 255 i~vdgg 260 (265)
T PRK07062 255 IDVSGG 260 (265)
T ss_pred EEEcCc
Confidence 766543
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=89.83 Aligned_cols=179 Identities=7% Similarity=0.004 Sum_probs=110.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++.... .+..+..+.+|+.|.+++.++++ ..|++|++++
T Consensus 15 Gas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag 94 (252)
T PRK07035 15 GASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRLDILVNNAA 94 (252)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4699999999999999999999999987653221 12357788999999998877664 4699998732
Q ss_pred C-----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHH-HHH-
Q 028525 75 G-----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-DES- 121 (208)
Q Consensus 75 ~-----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~e~- 121 (208)
. . ....+...+..+++++||.....+..+...|..++ ...+. ++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK--~al~~~~~~l 172 (252)
T PRK07035 95 ANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSPGDFQGIYSITK--AAVISMTKAF 172 (252)
T ss_pred cCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCCCCCCcchHHHH--HHHHHHHHHH
Confidence 1 0 01123445667999999876554333334454422 21111 111
Q ss_pred --HHHhcCCCEEEEeccccccCCCCc----cce-e-eecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 122 --MLMASGIPYTIIRTGVLQNTPGGK----QGF-Q-FEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 122 --~l~~~~~~~tivRp~~~~~~~~~~----~~~-~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
.+...+++++.|.||.+....... ... . .............+|+|+.+..++.+... .++.+.+.+|
T Consensus 173 ~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~dgg 249 (252)
T PRK07035 173 AKECAPFGIRVNALLPGLTDTKFASALFKNDAILKQALAHIPLRRHAEPSEMAGAVLYLASDASSYTTGECLNVDGG 249 (252)
T ss_pred HHHHhhcCEEEEEEeeccccCcccccccCCHHHHHHHHccCCCCCcCCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 123468999999999874322111 000 0 00001123345679999999998876542 4677776543
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-10 Score=87.97 Aligned_cols=181 Identities=13% Similarity=0.068 Sum_probs=110.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++..|+.++.... .+.++..+.+|++|++++.++++ .+|++|++++
T Consensus 16 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~ag 95 (253)
T PRK05867 16 GASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGIDIAVCNAG 95 (253)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 3588999999999999999999999987653221 12357888999999999888764 5799998722
Q ss_pred ----Cc----------------------hh----hhhhhcC-CCeEEEeceeeeccC--CCCcccccchhHHH--hHHHH
Q 028525 75 ----GF----------------------IS----NAGSLKG-VQHVILLSQLSVYRG--SGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 75 ----~~----------------------~~----~a~~~~g-v~~~v~~Ss~~~~~~--~~~~~~~~~~~~~~--~~~~~ 119 (208)
.. .. ..+.+.+ -.++|++||...... +.....|...++-. +.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~Y~asKaal~~~~~~l 175 (253)
T PRK05867 96 IITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINVPQQVSHYCASKAAVIHLTKAM 175 (253)
T ss_pred CCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCCCCCCccchHHHHHHHHHHHHHH
Confidence 10 00 1122232 247899988764321 11223455433211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCcc-ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGKQ-GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~~-~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
...+...|+++..|+||++........ .. .+............+|+|+++..++.+.. ..|+.+.+.+|
T Consensus 176 a~e~~~~gI~vn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgG 249 (253)
T PRK05867 176 AVELAPHKIRVNSVSPGYILTELVEPYTEYQPLWEPKIPLGRLGRPEELAGLYLYLASEASSYMTGSDIVIDGG 249 (253)
T ss_pred HHHHhHhCeEEEEeecCCCCCcccccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCcccCCcCCCeEEECCC
Confidence 122344689999999999854321110 00 01111112345678999999999887543 24677776644
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=89.83 Aligned_cols=179 Identities=15% Similarity=0.064 Sum_probs=107.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----h--cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----S--FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~--~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+.+|.||++++++|+++|++|+++.|+.++..+ . .+.++.++.+|++|++++.+++. .+|+||++++
T Consensus 7 G~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag 86 (254)
T TIGR02415 7 GGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDVMVNNAG 86 (254)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 568999999999999999999999998654321 1 13458889999999999888764 4699998732
Q ss_pred C----ch--------------------------hhhhhhcC-CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 75 G----FI--------------------------SNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 75 ~----~~--------------------------~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
. .. ...+...+ ..+||++||.....+......|...+... +.+....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~l~~ 166 (254)
T TIGR02415 87 VAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGNPILSAYSSTKFAVRGLTQTAAQ 166 (254)
T ss_pred cCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 1 00 01122233 25899999876544333344555432211 1111111
Q ss_pred HHHhcCCCEEEEeccccccCCCCc------c--ceeee-------cCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEE
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGK------Q--GFQFE-------EGCAANGSLSKEDAAFICVEALESIPQ--TGLIFE 184 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~------~--~~~~~-------~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~ 184 (208)
.+...+++++.++||++....... . ....+ .......+.+.+|+++++..++.++.. .++.+.
T Consensus 167 ~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~ 246 (254)
T TIGR02415 167 ELAPKGITVNAYCPGIVKTPMWEEIDEETSEIAGKPIGEGFEEFSSEIALGRPSEPEDVAGLVSFLASEDSDYITGQSIL 246 (254)
T ss_pred HhcccCeEEEEEecCcccChhhhhhhhhhhhcccCchHHHHHHHHhhCCCCCCCCHHHHHHHHHhhcccccCCccCcEEE
Confidence 222358999999999874322110 0 00000 001112356779999999999886542 245544
Q ss_pred Ee
Q 028525 185 VV 186 (208)
Q Consensus 185 i~ 186 (208)
+.
T Consensus 247 ~d 248 (254)
T TIGR02415 247 VD 248 (254)
T ss_pred ec
Confidence 44
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-10 Score=88.51 Aligned_cols=182 Identities=10% Similarity=0.036 Sum_probs=113.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+...... ..+.++.++.+|++|.+++.++++ +.|++|++++
T Consensus 18 G~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~d~li~~ag 97 (255)
T PRK06113 18 GAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGKVDILVNNAG 97 (255)
T ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 468999999999999999999999988655321 113357888999999999887664 4699998722
Q ss_pred ----Cc---------------------hhhh----hhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHH
Q 028525 75 ----GF---------------------ISNA----GSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 75 ----~~---------------------~~~a----~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
.. +.++ +.+.+..+||++||.....+..+...|...++.. +.+.....+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~ 177 (255)
T PRK06113 98 GGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDL 177 (255)
T ss_pred CCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccCCCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 10 0111 2234446899999987665444444555433211 111111223
Q ss_pred HhcCCCEEEEeccccccCCCCcc--c-e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQ--G-F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~--~-~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
...+++++.+.||.+........ . . ..........+.+.+|+++++..++.... ..|+.+++.++.
T Consensus 178 ~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~G~~i~~~gg~ 250 (255)
T PRK06113 178 GEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGG 250 (255)
T ss_pred hhhCeEEEEEecccccccccccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEECCCc
Confidence 34689999999998853221110 0 0 00011111234577999999999986543 247888887664
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=89.12 Aligned_cols=181 Identities=10% Similarity=0.033 Sum_probs=106.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh---hhh--cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA---MES--FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~---~~~--~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~ 75 (208)
+++|.||++++++|+++|++|+++.|+.... .+. .+.++.++.+|++|++++.++++ ..|++|++++.
T Consensus 13 G~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 13 GALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGV 92 (263)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 4699999999999999999999999986421 111 13357889999999999888765 46999987321
Q ss_pred ----c----------------------hhhh----hhhcCCCeEEEeceeeec-cCCCCcccccchhHHH--hHHHHHHH
Q 028525 76 ----F----------------------ISNA----GSLKGVQHVILLSQLSVY-RGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 76 ----~----------------------~~~a----~~~~gv~~~v~~Ss~~~~-~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
. +.++ +...+..+||++||.... ........|...++.. +.+..-..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~ 172 (263)
T PRK08226 93 CRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVE 172 (263)
T ss_pred CCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcccCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 0 0011 223455689999886543 2222223344322211 11111111
Q ss_pred HHhcCCCEEEEeccccccCCCCc---------cc-e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGK---------QG-F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~---------~~-~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+...+++++.|+||.+....... .. . .+....+...+.+.+|+|+++..++.... ..++.+.+.+|
T Consensus 173 ~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~dgg 252 (263)
T PRK08226 173 YAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPLRRLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252 (263)
T ss_pred hcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCchhcCCcCceEeECCC
Confidence 22358999999999875431110 00 0 00011111234578999999988875432 24566666544
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-10 Score=88.85 Aligned_cols=179 Identities=13% Similarity=0.043 Sum_probs=107.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCch-hhh----h---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKR-NAM----E---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~-~~~----~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
.++.||++++++|+++|++|++..|+.. +.. + ..+..+.++.+|++|++++.++++ .+|++|+++
T Consensus 16 as~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~nA 95 (260)
T PRK08416 16 GTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDFDRVDFFISNA 95 (260)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhcCCccEEEECc
Confidence 5899999999999999999988876432 211 1 123467899999999998887774 369999763
Q ss_pred C----------Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--h
Q 028525 74 E----------GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--L 115 (208)
Q Consensus 74 ~----------~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~ 115 (208)
+ ..+ ...+.+.+..+||++||.+..........|...++-. +
T Consensus 96 g~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~ 175 (260)
T PRK08416 96 IISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLVYIENYAGHGTSKAAVETM 175 (260)
T ss_pred cccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccccCCCCcccchhhHHHHHHH
Confidence 1 110 0112334456899999986543333334555433211 1
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccCCCCcc----ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEee
Q 028525 116 AEQDESMLMASGIPYTIIRTGVLQNTPGGKQ----GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVN 187 (208)
Q Consensus 116 ~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~----~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~ 187 (208)
.+.....+...++++..|+||.+........ .. .+..........+.+|+|.+++.++.++. ..++.+.+.+
T Consensus 176 ~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~r~~~p~~va~~~~~l~~~~~~~~~G~~i~vdg 255 (260)
T PRK08416 176 VKYAATELGEKNIRVNAVSGGPIDTDALKAFTNYEEVKAKTEELSPLNRMGQPEDLAGACLFLCSEKASWLTGQTIVVDG 255 (260)
T ss_pred HHHHHHHhhhhCeEEEEEeeCcccChhhhhccCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhhcccCcEEEEcC
Confidence 1111222334689999999998743221100 00 00001112335577999999999886543 2466666653
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.6e-11 Score=90.93 Aligned_cols=178 Identities=15% Similarity=0.107 Sum_probs=105.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-hhh---hcCCceEEEEcCCCCHHHHHHHhcCC---------C--EEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-AME---SFGTYVESMAGDASNKKFLKTALRGV---------R--SIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~~---~~~~~v~~v~~Dl~d~~~l~~~~~~~---------d--~vi~~ 72 (208)
+++|.||++++++|+++|++|++++|++.+ ... ....+++++.+|++|++++.++++.+ + ++|++
T Consensus 8 GasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 87 (251)
T PRK06924 8 GTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELETNFNEILSSIQEDNVSSIHLINN 87 (251)
T ss_pred cCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHHHHHHHHHhcCcccCCceEEEEc
Confidence 579999999999999999999999998733 221 12346889999999999998877532 1 45554
Q ss_pred CCC------c-------------------------hhhhhhh-cCCCeEEEeceeeeccCCCCcccccchhHHH--hHHH
Q 028525 73 SEG------F-------------------------ISNAGSL-KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQ 118 (208)
Q Consensus 73 ~~~------~-------------------------~~~a~~~-~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~ 118 (208)
++. . ....+.. .+.++||++||.....+..+...|...++-. +.+.
T Consensus 88 ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sKaa~~~~~~~ 167 (251)
T PRK06924 88 AGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNPYFGWSAYCSSKAGLDMFTQT 167 (251)
T ss_pred ceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCCCCCcHHHhHHHHHHHHHHHH
Confidence 211 0 0011222 2346899999987665444444555433211 1110
Q ss_pred --HHHHHHhcCCCEEEEeccccccCCCC------cccee----eecCCcCCCcccHHHHHHHHHHHhhCCC-CCCcEEEE
Q 028525 119 --DESMLMASGIPYTIIRTGVLQNTPGG------KQGFQ----FEEGCAANGSLSKEDAAFICVEALESIP-QTGLIFEV 185 (208)
Q Consensus 119 --~e~~l~~~~~~~tivRp~~~~~~~~~------~~~~~----~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~i 185 (208)
.|...+..++++..|+||++...... ...+. +........+.+.+|+|+.++.++.++. ..|+.+.+
T Consensus 168 la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~G~~~~v 247 (251)
T PRK06924 168 VATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTNLDRFITLKEEGKLLSPEYVAKALRNLLETEDFPNGEVIDI 247 (251)
T ss_pred HHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchHHHHHHHHhhcCCcCCHHHHHHHHHHHHhcccCCCCCEeeh
Confidence 11111235799999999987532210 00000 0000011345788999999999998633 33555444
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-10 Score=99.97 Aligned_cols=164 Identities=13% Similarity=0.137 Sum_probs=108.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|++++..+. .+.++.++.+|++|.+++.++++ ++|++|++++
T Consensus 378 Gas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~li~~Ag 457 (657)
T PRK07201 378 GASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHGHVDYLVNNAG 457 (657)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4689999999999999999999999987663221 13468889999999999988876 5799998732
Q ss_pred C----ch----------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 75 G----FI----------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 75 ~----~~----------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
. .. ...+++.+..+||++||.+++.+......|...++.. +.+...
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la 537 (657)
T PRK07201 458 RSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNAPRFSAYVASKAALDAFSDVAA 537 (657)
T ss_pred CCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 1 00 1123445677999999998776443344454433211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~ 176 (208)
..+...+++++.|+||.+........ ..+ .....++.+++|+.++..+.+.
T Consensus 538 ~e~~~~~i~v~~v~pg~v~T~~~~~~-~~~----~~~~~~~~~~~a~~i~~~~~~~ 588 (657)
T PRK07201 538 SETLSDGITFTTIHMPLVRTPMIAPT-KRY----NNVPTISPEEAADMVVRAIVEK 588 (657)
T ss_pred HHHHhhCCcEEEEECCcCcccccCcc-ccc----cCCCCCCHHHHHHHHHHHHHhC
Confidence 22334689999999999854322111 101 1233578899999999987643
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-10 Score=88.73 Aligned_cols=180 Identities=10% Similarity=-0.022 Sum_probs=108.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc-CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF-GTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG---- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~---- 75 (208)
+++|.||++++++|+++|++|++++|+..+..... .....++.+|++|++++.++++ +.|++|++++.
T Consensus 14 GasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~ 93 (255)
T PRK06057 14 GGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAFNNAGISPPE 93 (255)
T ss_pred CCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCC
Confidence 46999999999999999999999999876532211 1123678999999999888875 46999987321
Q ss_pred --ch--------------------------hhhhhhcCCCeEEEeceee-eccCCCCcccccchhHH--HhHHHHHHHHH
Q 028525 76 --FI--------------------------SNAGSLKGVQHVILLSQLS-VYRGSGGIQALMKGNAR--KLAEQDESMLM 124 (208)
Q Consensus 76 --~~--------------------------~~a~~~~gv~~~v~~Ss~~-~~~~~~~~~~~~~~~~~--~~~~~~e~~l~ 124 (208)
.. ...+.+.+..++|++||.. .++...+...|...++. .+.+.....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~~~~~~Y~~sKaal~~~~~~l~~~~~ 173 (255)
T PRK06057 94 DDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSATSQISYTASKGGVLAMSRELGVQFA 173 (255)
T ss_pred CCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 00 0112334556899998864 34332233445443321 11111112233
Q ss_pred hcCCCEEEEeccccccCCCCccceeee-----c---CCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 125 ASGIPYTIIRTGVLQNTPGGKQGFQFE-----E---GCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~~~~~~~-----~---~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..+++++.||||++.... ....+... . ......+...+|+|+++..++.+.. ..++.+.+.++
T Consensus 174 ~~gi~v~~i~pg~v~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~~g 246 (255)
T PRK06057 174 RQGIRVNALCPGPVNTPL-LQELFAKDPERAARRLVHVPMGRFAEPEEIAAAVAFLASDDASFITASTFLVDGG 246 (255)
T ss_pred hhCcEEEEEeeCCcCCch-hhhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 468999999999985432 11111000 0 0011245667999999988876543 23666666543
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-10 Score=87.74 Aligned_cols=179 Identities=12% Similarity=0.093 Sum_probs=108.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|.+++.++++ .+|++|++++
T Consensus 17 G~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~~~ 96 (255)
T PRK05717 17 GAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDALVCNAAIAD 96 (255)
T ss_pred CCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 368999999999999999999999888655322 233468899999999988866553 3699998722
Q ss_pred -C--c----------------------hhhhhh---hcCCCeEEEeceeeeccCCCCcccccchhHHHhHH-HHHHHHHh
Q 028525 75 -G--F----------------------ISNAGS---LKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAE-QDESMLMA 125 (208)
Q Consensus 75 -~--~----------------------~~~a~~---~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~-~~e~~l~~ 125 (208)
. . +.+++. .....+||++||...+.+......|...+ ...+ .++.+-.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~~~~~~Y~~sK--aa~~~~~~~la~~ 174 (255)
T PRK05717 97 PHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSEPDTEAYAASK--GGLLALTHALAIS 174 (255)
T ss_pred CCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCCCCCcchHHHH--HHHHHHHHHHHHH
Confidence 1 0 011111 11235899999887655433344555433 2211 11222122
Q ss_pred --cCCCEEEEeccccccCCCCccc-eee---e-cCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 126 --SGIPYTIIRTGVLQNTPGGKQG-FQF---E-EGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 126 --~~~~~tivRp~~~~~~~~~~~~-~~~---~-~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+++++.++||++......... ..+ . .........+.+|+|.++..++.... ..++.+.+.++
T Consensus 175 ~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg 246 (255)
T PRK05717 175 LGPEIRVNAVSPGWIDARDPSQRRAEPLSEADHAQHPAGRVGTVEDVAAMVAWLLSRQAGFVTGQEFVVDGG 246 (255)
T ss_pred hcCCCEEEEEecccCcCCccccccchHHHHHHhhcCCCCCCcCHHHHHHHHHHHcCchhcCccCcEEEECCC
Confidence 3589999999998653211110 000 0 00112344577999999988886543 24667766543
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-10 Score=86.30 Aligned_cols=179 Identities=15% Similarity=0.119 Sum_probs=105.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcC-chhhhh----h--cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKD-KRNAME----S--FGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~-~~~~~~----~--~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++..|+ +++... . .+.++.++.+|++|.+++.++++ ..|++|+++
T Consensus 9 G~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~a 88 (248)
T PRK06123 9 GASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRLDALVNNA 88 (248)
T ss_pred CCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 579999999999999999998877643 332211 1 13357789999999999888875 569999872
Q ss_pred CC-----ch----------------------hhh----hhhc--C-CCeEEEeceeeeccCCCC-cccccchhHHHhHHH
Q 028525 74 EG-----FI----------------------SNA----GSLK--G-VQHVILLSQLSVYRGSGG-IQALMKGNARKLAEQ 118 (208)
Q Consensus 74 ~~-----~~----------------------~~a----~~~~--g-v~~~v~~Ss~~~~~~~~~-~~~~~~~~~~~~~~~ 118 (208)
+. .. .++ +... + -.+||++||.....+... ...|...++ ..+.
T Consensus 89 g~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~Y~~sKa--a~~~ 166 (248)
T PRK06123 89 GILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPGEYIDYAASKG--AIDT 166 (248)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCCCccchHHHHH--HHHH
Confidence 21 00 011 1111 1 136899998765432221 224555332 1111
Q ss_pred -HH---HHHHhcCCCEEEEeccccccCCCCccce--e---eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEee
Q 028525 119 -DE---SMLMASGIPYTIIRTGVLQNTPGGKQGF--Q---FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVN 187 (208)
Q Consensus 119 -~e---~~l~~~~~~~tivRp~~~~~~~~~~~~~--~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~ 187 (208)
+. ..+...++++++|||+.+.......... . +..........+.+|++++++.++.... ..++.|++.+
T Consensus 167 ~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~g 246 (248)
T PRK06123 167 MTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGGEPGRVDRVKAGIPMGRGGTAEEVARAILWLLSDEASYTTGTFIDVSG 246 (248)
T ss_pred HHHHHHHHhcccCeEEEEEecCcccCchhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEeecC
Confidence 11 1123358999999999986542111000 0 0000111122367999999999887543 3578888875
Q ss_pred C
Q 028525 188 G 188 (208)
Q Consensus 188 ~ 188 (208)
+
T Consensus 247 g 247 (248)
T PRK06123 247 G 247 (248)
T ss_pred C
Confidence 4
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-10 Score=87.21 Aligned_cols=179 Identities=12% Similarity=0.040 Sum_probs=104.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~-- 75 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+..+.++.+|++|.+++..+++ ++|++|++++.
T Consensus 13 Gasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~ 92 (249)
T PRK06500 13 GGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAVFINAGVAK 92 (249)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 469999999999999999999999998665322 224467889999999887766543 57999987321
Q ss_pred --c----------------------hhhhhhh--cCCCeEEEeceeeeccCCCCcccccchhHHHhHHH-HH---HHHHh
Q 028525 76 --F----------------------ISNAGSL--KGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-DE---SMLMA 125 (208)
Q Consensus 76 --~----------------------~~~a~~~--~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~e---~~l~~ 125 (208)
. +.+++.. ....++|++||.....+......|...+ ...+. ++ ..+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~~~~~~Y~~sK--~a~~~~~~~la~e~~~ 170 (249)
T PRK06500 93 FAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGMPNSSVYAASK--AALLSLAKTLSGELLP 170 (249)
T ss_pred CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCCCCccHHHHHH--HHHHHHHHHHHHHhhh
Confidence 1 0111211 1224677777755432222334454422 21111 11 11223
Q ss_pred cCCCEEEEeccccccCCCCc---ccee-------eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 126 SGIPYTIIRTGVLQNTPGGK---QGFQ-------FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~---~~~~-------~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+++++++|||.+....... .... +..........+.+|+|++++.++.++. ..+..+.+.+|
T Consensus 171 ~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~~gg 245 (249)
T PRK06500 171 RGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPLGRFGTPEEIAKAVLYLASDESAFIVGSEIIVDGG 245 (249)
T ss_pred cCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCCeEEECCC
Confidence 58999999999875431100 0000 0001111234467999999999886543 23555555544
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.5e-11 Score=90.26 Aligned_cols=165 Identities=14% Similarity=0.093 Sum_probs=103.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh-hhcCCceEEEEcCCCCHHHHHHHhc-----------CCCEEEEcCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM-ESFGTYVESMAGDASNKKFLKTALR-----------GVRSIICPSE- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~-~~~~~~v~~v~~Dl~d~~~l~~~~~-----------~~d~vi~~~~- 74 (208)
+++|.||++++++|+++|++|++++|+..+.. ...+.++.++.+|+.|.+++.+++. ..|++|++++
T Consensus 8 GasggiG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ag~ 87 (243)
T PRK07023 8 GHSRGLGAALAEQLLQPGIAVLGVARSRHPSLAAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGASRVLLINNAGT 87 (243)
T ss_pred cCCcchHHHHHHHHHhCCCEEEEEecCcchhhhhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCCCceEEEEcCcc
Confidence 57999999999999999999999999876422 2223468899999999998888542 3578887621
Q ss_pred ----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHH
Q 028525 75 ----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLM 124 (208)
Q Consensus 75 ----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~ 124 (208)
+. ....+...+.++||++||...+.+..+...|...+ .. .|.+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK--~a---~~~~~~ 162 (243)
T PRK07023 88 VEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNAYAGWSVYCATK--AA---LDHHAR 162 (243)
T ss_pred cCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCCCCCchHHHHHH--HH---HHHHHH
Confidence 10 01123334567999999987765444444454422 21 122222
Q ss_pred ------hcCCCEEEEeccccccCCCC---ccc---ee----eecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 125 ------ASGIPYTIIRTGVLQNTPGG---KQG---FQ----FEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 125 ------~~~~~~tivRp~~~~~~~~~---~~~---~~----~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
..+++++.|+||.+-..... ... +. +.........+..+|+|..++..+..+.
T Consensus 163 ~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~l~~~~ 231 (243)
T PRK07023 163 AVALDANRALRIVSLAPGVVDTGMQATIRATDEERFPMRERFRELKASGALSTPEDAARRLIAYLLSDD 231 (243)
T ss_pred HHHhcCCCCcEEEEecCCccccHHHHHHHhcccccchHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccc
Confidence 35899999999987332100 000 00 0000011335677999997777776554
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-10 Score=87.49 Aligned_cols=179 Identities=14% Similarity=0.097 Sum_probs=108.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++... ..+.++.++.+|++|++++.++++ .+|++|++++
T Consensus 13 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~ag~~~ 92 (263)
T PRK06200 13 GGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCFVGNAGIWD 92 (263)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCCCcc
Confidence 468999999999999999999999998766432 223457889999999998887764 4699998722
Q ss_pred --Cch--------------------------hh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHH
Q 028525 75 --GFI--------------------------SN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESM 122 (208)
Q Consensus 75 --~~~--------------------------~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 122 (208)
..+ .+ .+++.+ .++|++||...+.+..+...|...++-... .++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~-~~~~l 170 (263)
T PRK06200 93 YNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASG-GSMIFTLSNSSFYPGGGGPLYTASKHAVVG-LVRQL 170 (263)
T ss_pred cCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcC-CEEEEECChhhcCCCCCCchhHHHHHHHHH-HHHHH
Confidence 000 00 112222 479999998766544344455553321110 11111
Q ss_pred HH--hcCCCEEEEeccccccCCCCccc-------ee-ee-------cCCcCCCcccHHHHHHHHHHHhhCC-C--CCCcE
Q 028525 123 LM--ASGIPYTIIRTGVLQNTPGGKQG-------FQ-FE-------EGCAANGSLSKEDAAFICVEALESI-P--QTGLI 182 (208)
Q Consensus 123 l~--~~~~~~tivRp~~~~~~~~~~~~-------~~-~~-------~~~~~~~~v~~~Dva~~~~~~l~~~-~--~~~~~ 182 (208)
-+ ..++++..|.||++......... .. .. ...+.......+|+|.+++.++.++ . ..|+.
T Consensus 171 a~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~eva~~~~fl~s~~~~~~itG~~ 250 (263)
T PRK06200 171 AYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAAITPLQFAPQPEDHTGPYVLLASRRNSRALTGVV 250 (263)
T ss_pred HHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhcCCCCCCCCCHHHHhhhhhheecccccCcccceE
Confidence 11 13599999999988543211000 00 00 0001123346699999999988755 3 24677
Q ss_pred EEEeeC
Q 028525 183 FEVVNG 188 (208)
Q Consensus 183 ~~i~~~ 188 (208)
+.+.+|
T Consensus 251 i~vdgG 256 (263)
T PRK06200 251 INADGG 256 (263)
T ss_pred EEEcCc
Confidence 776544
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-10 Score=87.23 Aligned_cols=180 Identities=16% Similarity=0.113 Sum_probs=110.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||+.+++.|+++|++|++++|+..+.... .+.++.++.+|+.|.+++.++++ +.|+||++++
T Consensus 12 G~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 12 GGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQLNGLINNAG 91 (253)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4589999999999999999999999987653211 23467889999999888876664 3699998732
Q ss_pred C----c--------h-h--------------------------hhhhhc-CCCeEEEeceeeeccCCCCcccccchhHHH
Q 028525 75 G----F--------I-S--------------------------NAGSLK-GVQHVILLSQLSVYRGSGGIQALMKGNARK 114 (208)
Q Consensus 75 ~----~--------~-~--------------------------~a~~~~-gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~ 114 (208)
. . . . ..+.+. .-.+|+++||.+.++. .+...|...++-.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~-~~~~~Y~~sK~a~ 170 (253)
T PRK08217 92 ILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGN-MGQTNYSASKAGV 170 (253)
T ss_pred ccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCC-CCCchhHHHHHHH
Confidence 1 0 0 0 011112 2246888998765542 2334454433211
Q ss_pred --hHHHHHHHHHhcCCCEEEEeccccccCCCCcc-ce---eeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC
Q 028525 115 --LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQ-GF---QFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNG 188 (208)
Q Consensus 115 --~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~-~~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~ 188 (208)
+.+.....+...+++++.++||.+........ .. .+..........+.+|+|+++..++......++.+++.++
T Consensus 171 ~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~~~gg 250 (253)
T PRK08217 171 AAMTVTWAKELARYGIRVAAIAPGVIETEMTAAMKPEALERLEKMIPVGRLGEPEEIAHTVRFIIENDYVTGRVLEIDGG 250 (253)
T ss_pred HHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCHHHHHHHHhcCCcCCCcCHHHHHHHHHHHHcCCCcCCcEEEeCCC
Confidence 11111122334689999999999854322110 00 0011111233457899999999998754446788888754
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-10 Score=86.71 Aligned_cols=180 Identities=14% Similarity=0.089 Sum_probs=107.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----C
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE----G 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----~ 75 (208)
+.+|.||++++++|+++|++|+++.|++++..+. ...++.++.+|+.|.+++.++++ +.|++|++++ .
T Consensus 9 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~~~~ 88 (236)
T PRK06483 9 GAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIHNASDWLAE 88 (236)
T ss_pred CCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEECCccccCC
Confidence 4689999999999999999999999987653222 12347889999999988877653 3699998732 1
Q ss_pred c--------------------------hhhhhhhcC--CCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHh--
Q 028525 76 F--------------------------ISNAGSLKG--VQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMA-- 125 (208)
Q Consensus 76 ~--------------------------~~~a~~~~g--v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~-- 125 (208)
. ....+...+ ..++|++||.....+......|...++-... .++.+-++
T Consensus 89 ~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~asKaal~~-l~~~~a~e~~ 167 (236)
T PRK06483 89 KPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGSDKHIAYAASKAALDN-MTLSFAAKLA 167 (236)
T ss_pred CcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCCCCCccHHHHHHHHHH-HHHHHHHHHC
Confidence 0 001122333 4589999987654333233445443321110 11111111
Q ss_pred cCCCEEEEeccccccCCCCcccee--eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQGFQ--FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNG 188 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~~~~--~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~ 188 (208)
.++++..|+||++........... .............+|+|+++..++......|+.+.+.+|
T Consensus 168 ~~irvn~v~Pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~G~~i~vdgg 232 (236)
T PRK06483 168 PEVKVNSIAPALILFNEGDDAAYRQKALAKSLLKIEPGEEEIIDLVDYLLTSCYVTGRSLPVDGG 232 (236)
T ss_pred CCcEEEEEccCceecCCCCCHHHHHHHhccCccccCCCHHHHHHHHHHHhcCCCcCCcEEEeCcc
Confidence 359999999998753321111000 000011122345799999999998744445677777644
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-10 Score=87.62 Aligned_cols=170 Identities=15% Similarity=0.055 Sum_probs=102.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCC-ceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGT-YVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~-~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|+++.|+.++..+. .+. .+.++.+|++|++++.++++ ++|++|+++
T Consensus 7 Gas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~a 86 (272)
T PRK07832 7 GAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDVVMNIA 86 (272)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 5799999999999999999999999987653211 112 24557899999988776664 369999873
Q ss_pred CC----c----------------------hhhh----hhhc-CCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHH
Q 028525 74 EG----F----------------------ISNA----GSLK-GVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDE 120 (208)
Q Consensus 74 ~~----~----------------------~~~a----~~~~-gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e 120 (208)
+. . +.++ +... ...+||++||.....+......|...++ ..+.+...
T Consensus 87 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~l~ 166 (272)
T PRK07832 87 GISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVALPWHAAYSASKFGLRGLSEVLR 166 (272)
T ss_pred CCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCCCCCcchHHHHHHHHHHHHHHH
Confidence 21 0 0111 2222 2458999999865443333334544332 11111122
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc---ceeeec-------CCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ---GFQFEE-------GCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~---~~~~~~-------~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
..+...++++++++||.+........ ...... .......++.+|+|++++.++.+++
T Consensus 167 ~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~~~~~~~ 233 (272)
T PRK07832 167 FDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVDRFRGHAVTPEKAAEKILAGVEKNR 233 (272)
T ss_pred HHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHhcCC
Confidence 22345789999999999854321110 000000 0011235788999999999997543
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-10 Score=97.93 Aligned_cols=170 Identities=17% Similarity=0.127 Sum_probs=108.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALRG-------VRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++. +|++|++++
T Consensus 322 G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~lv~~Ag 401 (582)
T PRK05855 322 GAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGVPDIVVNNAG 401 (582)
T ss_pred CCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCCCcEEEECCc
Confidence 469999999999999999999999998765322 1234678999999999998888753 699998732
Q ss_pred ----Cch--------------------------hhhhhhcC-CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 75 ----GFI--------------------------SNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 75 ----~~~--------------------------~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+.+ ...+.+.+ -.+||++||...+.+..+...|..+++-. +.+....
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sKaa~~~~~~~l~~ 481 (582)
T PRK05855 402 IGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSRSLPAYATSKAAVLMLSECLRA 481 (582)
T ss_pred cCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 110 01123333 25899999998876555555666543211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCcccee-eec-----------CCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQGFQ-FEE-----------GCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~~~~-~~~-----------~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
.+...|++++.|+||.+.........+. ... ........+.+|+|+.++.++.++.
T Consensus 482 e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~va~~~~~~~~~~~ 549 (582)
T PRK05855 482 ELAAAGIGVTAICPGFVDTNIVATTRFAGADAEDEARRRGRADKLYQRRGYGPEKVAKAIVDAVKRNK 549 (582)
T ss_pred HhcccCcEEEEEEeCCCcccchhccccCCcccchhhhHHhhhhhhccccCCCHHHHHHHHHHHHHcCC
Confidence 2345699999999998743221111000 000 0001122467999999999998655
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-10 Score=88.36 Aligned_cols=178 Identities=11% Similarity=0.070 Sum_probs=109.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC-----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG----- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~----- 75 (208)
+++|.||++++++|+++|++|++++|+..+.. ..++.++.+|++|++++.++++ .+|++|++++.
T Consensus 16 G~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~ 92 (266)
T PRK06171 16 GGSSGIGLAIVKELLANGANVVNADIHGGDGQ---HENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLVNNAGINIPRL 92 (266)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCccccc---cCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCcccCCcc
Confidence 35899999999999999999999999876543 2357889999999999887765 46999987220
Q ss_pred ------------c------------------hhh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHH
Q 028525 76 ------------F------------------ISN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 76 ------------~------------------~~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~ 119 (208)
. ..+ .+.+.+..+||++||.....+......|...++.. +.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~l~~~l 172 (266)
T PRK06171 93 LVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGSEGQSCYAATKAALNSFTRSW 172 (266)
T ss_pred ccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCCCCCCchhHHHHHHHHHHHHHH
Confidence 0 001 12233445899999987665444444555433211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCcc----cee-------------eec--CCcCCCcccHHHHHHHHHHHhhCCCC--
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGKQ----GFQ-------------FEE--GCAANGSLSKEDAAFICVEALESIPQ-- 178 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~~----~~~-------------~~~--~~~~~~~v~~~Dva~~~~~~l~~~~~-- 178 (208)
...+...+++++.|+||.+...+.... ... +.. ..........+|||.++..++..+..
T Consensus 173 a~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~eva~~~~fl~s~~~~~i 252 (266)
T PRK06171 173 AKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQLRAGYTKTSTIPLGRSGKLSEVADLVCYLLSDRASYI 252 (266)
T ss_pred HHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHHHHHhhhcccccccCCCCCCHHHhhhheeeeeccccccc
Confidence 122334689999999998742211000 000 000 01112234569999999988875432
Q ss_pred CCcEEEEeeC
Q 028525 179 TGLIFEVVNG 188 (208)
Q Consensus 179 ~~~~~~i~~~ 188 (208)
.++.+.+.+|
T Consensus 253 tG~~i~vdgg 262 (266)
T PRK06171 253 TGVTTNIAGG 262 (266)
T ss_pred eeeEEEecCc
Confidence 3666666543
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-10 Score=88.26 Aligned_cols=181 Identities=16% Similarity=0.096 Sum_probs=109.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---c--CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---F--GTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~--~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~ 75 (208)
+.+|.||++++++|+++|++|++++|++++..+. . ..++.++.+|++|++++.++++ +.|++|++++.
T Consensus 7 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li~naG~ 86 (259)
T PRK08340 7 ASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDALVWNAGN 86 (259)
T ss_pred cCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 5789999999999999999999999987653221 1 1257889999999999888774 47999987221
Q ss_pred ------ch--------------------------hhhh-hhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHH
Q 028525 76 ------FI--------------------------SNAG-SLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDE 120 (208)
Q Consensus 76 ------~~--------------------------~~a~-~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e 120 (208)
.. ...+ ++.+..+||++||.....+..+...|...++- .+.+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~~~~~~y~~sKaa~~~~~~~la 166 (259)
T PRK08340 87 VRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPMPPLVLADVTRAGLVQLAKGVS 166 (259)
T ss_pred CCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 00 0011 12344689999998766543333344432211 1111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc--------cee--------eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcE
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ--------GFQ--------FEEGCAANGSLSKEDAAFICVEALESIP--QTGLI 182 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~--------~~~--------~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~ 182 (208)
..+...++++..|.||++........ ... +....+.......+|+|++++.++.++. ..|++
T Consensus 167 ~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~fL~s~~~~~itG~~ 246 (259)
T PRK08340 167 RTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERTPLKRTGRWEELGSLIAFLLSENAEYMLGST 246 (259)
T ss_pred HHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccCCccCCCCHHHHHHHHHHHcCcccccccCce
Confidence 22334689999999998743221100 000 0000111234567999999999887543 24666
Q ss_pred EEEeeC
Q 028525 183 FEVVNG 188 (208)
Q Consensus 183 ~~i~~~ 188 (208)
+.+.+|
T Consensus 247 i~vdgg 252 (259)
T PRK08340 247 IVFDGA 252 (259)
T ss_pred EeecCC
Confidence 666544
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.7e-11 Score=93.76 Aligned_cols=168 Identities=13% Similarity=-0.002 Sum_probs=102.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC--CceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG--TYVESMAGDASNKKFLKTALR-------GVRSIICPSEG--- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~--~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~--- 75 (208)
+++|.||++++++|+++|++|++++|+.++..+... .++.++.+|++|.+++.++++ ++|++|++++-
T Consensus 33 GasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~nAg~~~~ 112 (315)
T PRK06196 33 GGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDILINNAGVMAC 112 (315)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEEECCCCCCC
Confidence 359999999999999999999999999776432211 247899999999999887763 57999987321
Q ss_pred -c------------------------hhhhhhhcCCCeEEEeceeeeccCC---------CCc---ccccchhHHHhHHH
Q 028525 76 -F------------------------ISNAGSLKGVQHVILLSQLSVYRGS---------GGI---QALMKGNARKLAEQ 118 (208)
Q Consensus 76 -~------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~---------~~~---~~~~~~~~~~~~~~ 118 (208)
. +...+.+.+..+||++||.+..... .+. ..|.. .|.....
T Consensus 113 ~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~Y~~--SK~a~~~ 190 (315)
T PRK06196 113 PETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIRWDDPHFTRGYDKWLAYGQ--SKTANAL 190 (315)
T ss_pred CCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCCccccCccCCCChHHHHHH--HHHHHHH
Confidence 0 0122344555799999987543210 011 12222 1221111
Q ss_pred ----HHHHHHhcCCCEEEEeccccccCCCCccce--e----eecC--CcC-CCcccHHHHHHHHHHHhhCCC
Q 028525 119 ----DESMLMASGIPYTIIRTGVLQNTPGGKQGF--Q----FEEG--CAA-NGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 119 ----~e~~l~~~~~~~tivRp~~~~~~~~~~~~~--~----~~~~--~~~-~~~v~~~Dva~~~~~~l~~~~ 177 (208)
....+...+++++.||||++.......... . +... ... ....+.+|+|..++.++..+.
T Consensus 191 ~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~ 262 (315)
T PRK06196 191 FAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEHGNPIDPGFKTPAQGAATQVWAATSPQ 262 (315)
T ss_pred HHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhhhhhhhhhhhhhhhhcCCHhHHHHHHHHHhcCCc
Confidence 112233468999999999986543211000 0 0000 000 013456999999998887654
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.9e-10 Score=85.53 Aligned_cols=179 Identities=11% Similarity=0.025 Sum_probs=109.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh--hhh--hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN--AME--SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~--~~~--~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~- 75 (208)
+++|.||++++++|++.|++|+++.|+... ..+ ..+..+..+.+|++|.+++.++++ .+|++|++++.
T Consensus 17 G~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D~li~~Ag~~ 96 (253)
T PRK08993 17 GCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHIDILVNNAGLI 96 (253)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 369999999999999999999988775432 111 123457889999999999888875 47999987321
Q ss_pred ---c----------------------hh----hhhhhcC-CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHH
Q 028525 76 ---F----------------------IS----NAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 76 ---~----------------------~~----~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
. +. ..+.+.+ -.++|++||...+.+......|...++.. +.+..-..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaa~~~~~~~la~e~ 176 (253)
T PRK08993 97 RREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEW 176 (253)
T ss_pred CCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCCCCcchHHHHHHHHHHHHHHHHHh
Confidence 0 00 1122233 25899999987665443344555533211 111111223
Q ss_pred HhcCCCEEEEeccccccCCCCcc----ce--eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEe
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQ----GF--QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVV 186 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~----~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~ 186 (208)
...+++++.++||.+........ .. .+....+...+...+|+|..+..++.+... .|+.+.+.
T Consensus 177 ~~~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~eva~~~~~l~s~~~~~~~G~~~~~d 247 (253)
T PRK08993 177 AKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMGPVVFLASSASDYINGYTIAVD 247 (253)
T ss_pred hhhCeEEEEEeeCcccCcchhhhccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCcEEEEC
Confidence 34689999999999854321110 00 000111123456679999999998875532 46666554
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-10 Score=98.93 Aligned_cols=182 Identities=14% Similarity=0.099 Sum_probs=111.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------cC-CceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------FG-TYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~~-~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++++|+.++.... .+ ..+..+.+|++|++++.++++ ++|++|++
T Consensus 421 GasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g~iDilV~n 500 (676)
T TIGR02632 421 GGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYGGVDIVVNN 500 (676)
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcCCCcEEEEC
Confidence 3589999999999999999999999987653211 11 246788999999999988876 67999987
Q ss_pred CC----Cch--------------------------hhhhhhcCC-CeEEEeceeeeccCCCCcccccchhHHH--hHHHH
Q 028525 73 SE----GFI--------------------------SNAGSLKGV-QHVILLSQLSVYRGSGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 73 ~~----~~~--------------------------~~a~~~~gv-~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~ 119 (208)
++ ... ...++..+. .+||++||.....+......|...++.. +.+..
T Consensus 501 AG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~~~~~aY~aSKaA~~~l~r~l 580 (676)
T TIGR02632 501 AGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAGKNASAYSAAKAAEAHLARCL 580 (676)
T ss_pred CCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 22 110 011223332 4899999976554333344555433211 11101
Q ss_pred HHHHHhcCCCEEEEeccccccCCCC-ccc----------ee-------eecCCcCCCcccHHHHHHHHHHHhhCCC--CC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGG-KQG----------FQ-------FEEGCAANGSLSKEDAAFICVEALESIP--QT 179 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~-~~~----------~~-------~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~ 179 (208)
...+...+++++.|+|+.+...... ... .. +........+++.+|+|+++..++.+.. ..
T Consensus 581 A~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~r~v~peDVA~av~~L~s~~~~~~T 660 (676)
T TIGR02632 581 AAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREERAAAYGIPADELEEHYAKRTLLKRHIFPADIAEAVFFLASSKSEKTT 660 (676)
T ss_pred HHHhcccCeEEEEEECCceecCcccccccchhhhhhcccCChHHHHHHHHhcCCcCCCcCHHHHHHHHHHHhCCcccCCc
Confidence 1112235899999999987532110 000 00 0001112345678999999998886543 34
Q ss_pred CcEEEEeeCC
Q 028525 180 GLIFEVVNGE 189 (208)
Q Consensus 180 ~~~~~i~~~~ 189 (208)
|+.+++.+|.
T Consensus 661 G~~i~vDGG~ 670 (676)
T TIGR02632 661 GCIITVDGGV 670 (676)
T ss_pred CcEEEECCCc
Confidence 7888887554
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-09 Score=83.69 Aligned_cols=181 Identities=12% Similarity=0.003 Sum_probs=109.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-hh----h--hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-AM----E--SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~----~--~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++..|+..+ .. + ..+.++.++.+|++|.+++.++++ .+|++|+++
T Consensus 14 Ga~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~lv~~a 93 (261)
T PRK08936 14 GGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFGTLDVMINNA 93 (261)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 469999999999999999999998886432 11 1 113457788999999998887764 469999872
Q ss_pred CC----ch--------------------------hhhhhhcC-CCeEEEeceeeeccCCCCcccccchhHH--HhHHHHH
Q 028525 74 EG----FI--------------------------SNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDE 120 (208)
Q Consensus 74 ~~----~~--------------------------~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e 120 (208)
+. .. ...+.+.+ -.++|++||...+.+..+...|...++. .+.+...
T Consensus 94 g~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sKaa~~~~~~~la 173 (261)
T PRK08936 94 GIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIPWPLFVHYAASKGGVKLMTETLA 173 (261)
T ss_pred CCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccCCCCCCcccHHHHHHHHHHHHHHH
Confidence 21 00 01123334 3589999998765544444456553321 1111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcccee------eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQGFQ------FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~~~~------~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..+...+++++.|+||++........... +............+|+++.+..++.++. ..+..+.+.++
T Consensus 174 ~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~i~~d~g 249 (261)
T PRK08936 174 MEYAPKGIRVNNIGPGAINTPINAEKFADPKQRADVESMIPMGYIGKPEEIAAVAAWLASSEASYVTGITLFADGG 249 (261)
T ss_pred HHHhhcCeEEEEEEECcCCCCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCcccCCccCcEEEECCC
Confidence 22344689999999998854322111000 0001112334567999999999887543 23555555543
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.7e-10 Score=84.37 Aligned_cols=179 Identities=13% Similarity=0.058 Sum_probs=106.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-hh---h---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-AM---E---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~---~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||.+++++|+++|++|+++.|+.+. .. + ..+.++.++.+|++|.+++.++++ ..|++|++.
T Consensus 5 Gas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~li~~a 84 (239)
T TIGR01831 5 GASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYGVVLNA 84 (239)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 569999999999999999999999876432 11 1 123468899999999999887764 358888762
Q ss_pred C----Cc----------------------hhhhh-----hhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 74 E----GF----------------------ISNAG-----SLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 74 ~----~~----------------------~~~a~-----~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
+ .. +.+++ +..+..+||++||.....+......|...++.. +.+...
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sK~a~~~~~~~la 164 (239)
T TIGR01831 85 GITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGNRGQVNYSAAKAGLIGATKALA 164 (239)
T ss_pred CCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCCCCCcchHHHHHHHHHHHHHHH
Confidence 2 10 01111 223456899999976554433344555433211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCccceee---ecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEe
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQGFQF---EEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVV 186 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~~~~~---~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~ 186 (208)
..+...+++++.++||.+.........-.. ............+|+|+++..++.++.. .+....+.
T Consensus 165 ~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~ 235 (239)
T TIGR01831 165 VELAKRKITVNCIAPGLIDTEMLAEVEHDLDEALKTVPMNRMGQPAEVASLAGFLMSDGASYVTRQVISVN 235 (239)
T ss_pred HHHhHhCeEEEEEEEccCccccchhhhHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCchhcCccCCEEEec
Confidence 223346899999999987543221100000 0001112234669999999999875432 34554444
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.3e-10 Score=85.56 Aligned_cols=187 Identities=15% Similarity=0.006 Sum_probs=108.5
Q ss_pred Cchhhhc-----ccc--CccHHHHHHHHHhCCCcEEEEEcCc-----------hh---hhh---hcCCceEEEEcCCCCH
Q 028525 1 MGPMKKM-----KRK--KMNFRMVILSLIVKRTRIKALVKDK-----------RN---AME---SFGTYVESMAGDASNK 56 (208)
Q Consensus 1 ~~~~~~~-----~~~--G~iG~~l~~~Ll~~g~~V~~~~R~~-----------~~---~~~---~~~~~v~~v~~Dl~d~ 56 (208)
|++++++ +++ +.||++++++|+++|++|++..|+. ++ ..+ ..+.++.++.+|++|.
T Consensus 1 ~~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~ 80 (256)
T PRK12859 1 MNQLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQN 80 (256)
T ss_pred CCCcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence 6666443 234 3699999999999999998875421 11 111 1134578889999999
Q ss_pred HHHHHHhc-------CCCEEEEcCC----Cc--------------------------hhhhhhhcCCCeEEEeceeeecc
Q 028525 57 KFLKTALR-------GVRSIICPSE----GF--------------------------ISNAGSLKGVQHVILLSQLSVYR 99 (208)
Q Consensus 57 ~~l~~~~~-------~~d~vi~~~~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~ 99 (208)
+++.+++. ..|++|++++ .. +...+++.+-.+||++||.....
T Consensus 81 ~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 160 (256)
T PRK12859 81 DAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQG 160 (256)
T ss_pred HHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCC
Confidence 99888774 2599997732 10 01123334446999999987654
Q ss_pred CCCCcccccchhHH--HhHHHHHHHHHhcCCCEEEEeccccccCCCCcccee--eecCCcCCCcccHHHHHHHHHHHhhC
Q 028525 100 GSGGIQALMKGNAR--KLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQ--FEEGCAANGSLSKEDAAFICVEALES 175 (208)
Q Consensus 100 ~~~~~~~~~~~~~~--~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~--~~~~~~~~~~v~~~Dva~~~~~~l~~ 175 (208)
+..+...|...++. .+.+.....+...+++++.|+||.+..... ..... +............+|+|+++..++..
T Consensus 161 ~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~-~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~s~ 239 (256)
T PRK12859 161 PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWM-TEEIKQGLLPMFPFGRIGEPKDAARLIKFLASE 239 (256)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCC-CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc
Confidence 33333445443321 111112223445789999999999743221 11110 10011112234679999999988865
Q ss_pred CC-C-CCcEEEEeeC
Q 028525 176 IP-Q-TGLIFEVVNG 188 (208)
Q Consensus 176 ~~-~-~~~~~~i~~~ 188 (208)
.. . .|+.+.+.+|
T Consensus 240 ~~~~~~G~~i~~dgg 254 (256)
T PRK12859 240 EAEWITGQIIHSEGG 254 (256)
T ss_pred cccCccCcEEEeCCC
Confidence 43 2 4566655533
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.3e-10 Score=85.97 Aligned_cols=181 Identities=10% Similarity=0.028 Sum_probs=108.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----h---cCCceEEEEcCCCCHHHHHHHhc---CCCEEEEcCCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----S---FGTYVESMAGDASNKKFLKTALR---GVRSIICPSEG-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~---~~~~v~~v~~Dl~d~~~l~~~~~---~~d~vi~~~~~-- 75 (208)
+.+|.+|+++++.|+++|++|++++|+.++... . .+.++.++.+|++|++++.++++ .+|++|++.+.
T Consensus 14 G~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~lv~~ag~~~ 93 (259)
T PRK06125 14 GASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDILVNNAGAIP 93 (259)
T ss_pred CCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 358899999999999999999999998765322 1 13457889999999999888775 47999987221
Q ss_pred --c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHHHHHh
Q 028525 76 --F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDESMLMA 125 (208)
Q Consensus 76 --~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~~l~~ 125 (208)
. ....+.+.+-.++|++||.....+......|...++ ..+.+.....+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~y~ask~al~~~~~~la~e~~~ 173 (259)
T PRK06125 94 GGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGENPDADYICGSAGNAALMAFTRALGGKSLD 173 (259)
T ss_pred CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccCCCCCchHhHHHHHHHHHHHHHHHHHhCc
Confidence 0 011233344458999988765432222222222211 1111111122334
Q ss_pred cCCCEEEEeccccccCCCC------c-----cceee---ecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 126 SGIPYTIIRTGVLQNTPGG------K-----QGFQF---EEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~------~-----~~~~~---~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+++++.|+||.+...... . ....+ ........+.+.+|+|.+++.++.++. ..|..+.+.+|
T Consensus 174 ~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~i~vdgg 252 (259)
T PRK06125 174 DGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAGLPLGRPATPEEVADLVAFLASPRSGYTSGTVVTVDGG 252 (259)
T ss_pred cCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhccCCcCCCcCHHHHHHHHHHHcCchhccccCceEEecCC
Confidence 6899999999997532100 0 00000 000111334577999999998886543 24666776644
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-09 Score=83.55 Aligned_cols=182 Identities=14% Similarity=0.107 Sum_probs=110.0
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
.+++|.||++++++|+++|++|++++|+..+.... .+..+.++.+|++|++++.++++ ..|++|+++
T Consensus 7 tG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lI~~a 86 (252)
T PRK07677 7 TGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRIDALINNA 86 (252)
T ss_pred eCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCccEEEECC
Confidence 46799999999999999999999999987653211 12468899999999998887664 469999873
Q ss_pred CC----c----------------------hhhhh----hhcC-CCeEEEeceeeeccCCCCcccccchhHH--HhHHHHH
Q 028525 74 EG----F----------------------ISNAG----SLKG-VQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDE 120 (208)
Q Consensus 74 ~~----~----------------------~~~a~----~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e 120 (208)
+. . +.+++ ...+ ..+||++||.....+.....+|..+++- .+.+...
T Consensus 87 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sKaa~~~~~~~la 166 (252)
T PRK07677 87 AGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTRTLA 166 (252)
T ss_pred CCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCCCCCcchHHHHHHHHHHHHHHH
Confidence 21 0 01111 2222 3589999988655433333445543321 1111111
Q ss_pred HHH-HhcCCCEEEEeccccccCCCCcccee-------eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 121 SML-MASGIPYTIIRTGVLQNTPGGKQGFQ-------FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 121 ~~l-~~~~~~~tivRp~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..+ +..+++++.|+||.+........... +........+...+|+|+++..++..+. ..|+.+.+.+|
T Consensus 167 ~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg 244 (252)
T PRK07677 167 VEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSVPLGRLGTPEEIAGLAYFLLSDEAAYINGTCITMDGG 244 (252)
T ss_pred HHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCccccccCCCEEEECCC
Confidence 112 23589999999999853221110000 0001111335567999999888876543 34666666644
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-09 Score=84.85 Aligned_cols=178 Identities=11% Similarity=0.033 Sum_probs=107.2
Q ss_pred ccC-ccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------cC-CceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 9 RKK-MNFRMVILSLIVKRTRIKALVKDKRNAMES-------FG-TYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 9 ~~G-~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~~-~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
++| .||+++++.|+++|++|++..|+..+..+. .+ .++.++.+|++|++++.++++ .+|++|++
T Consensus 25 ~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ 104 (262)
T PRK07831 25 AAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERLGRLDVLVNN 104 (262)
T ss_pred CCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 466 599999999999999999999887653211 12 357889999999998887774 46999987
Q ss_pred CCC----ch--------------------------hhhhhhcC-CCeEEEeceeeeccCCCCcccccchhHHH--hHHHH
Q 028525 73 SEG----FI--------------------------SNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 73 ~~~----~~--------------------------~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~ 119 (208)
.+. .+ ...+...+ -.++|++||.....+..+...|...++-. +.+..
T Consensus 105 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~sKaal~~~~~~l 184 (262)
T PRK07831 105 AGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQHGQAHYAAAKAGVMALTRCS 184 (262)
T ss_pred CCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCCCcchHHHHHHHHHHHHHH
Confidence 321 00 01122333 45888888876554443444555433211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCc--cce---eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEe
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGK--QGF---QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVV 186 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~--~~~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~ 186 (208)
-..+...++++..|+||.+....... ... .+............+|+|++++.++.++. ..|+.+.+.
T Consensus 185 a~e~~~~gI~v~~i~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~r~~~p~~va~~~~~l~s~~~~~itG~~i~v~ 258 (262)
T PRK07831 185 ALEAAEYGVRINAVAPSIAMHPFLAKVTSAELLDELAAREAFGRAAEPWEVANVIAFLASDYSSYLTGEVVSVS 258 (262)
T ss_pred HHHhCccCeEEEEEeeCCccCcccccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCcCCceEEeC
Confidence 11122368999999999875432111 000 01111112334567999999999887543 246666554
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-09 Score=85.75 Aligned_cols=169 Identities=12% Similarity=0.083 Sum_probs=104.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcC--CceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFG--TYVESMAGDASNKKFLKTALR-------GVRSIICPSEG 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~--~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~ 75 (208)
+++|.||+++++.|+++|++|+++.|+.++..+ ..+ ..+..+.+|++|.+++.++++ .+|++|++++.
T Consensus 16 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 16 GAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGIDVVVANAGI 95 (296)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 358999999999999999999999998776422 122 245566799999998887764 46999987321
Q ss_pred ----ch----------------------hh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHH
Q 028525 76 ----FI----------------------SN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 76 ----~~----------------------~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
.+ .+ .+.+ ...+||++||...+.+......|..+++.. +.+.....+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~~~~l~~e~ 174 (296)
T PRK05872 96 ASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIE-RRGYVLQVSSLAAFAAAPGMAAYCASKAGVEAFANALRLEV 174 (296)
T ss_pred CCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCEEEEEeCHhhcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 00 01 1112 235899999987765443444555433211 111111223
Q ss_pred HhcCCCEEEEeccccccCCCCcc-ce-e----ee--cCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQ-GF-Q----FE--EGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~-~~-~----~~--~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
...++.++.+.||++........ .. . +. .+.......+.+|+|++++.++.+..
T Consensus 175 ~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~i~~~~~~~~ 236 (296)
T PRK05872 175 AHHGVTVGSAYLSWIDTDLVRDADADLPAFRELRARLPWPLRRTTSVEKCAAAFVDGIERRA 236 (296)
T ss_pred HHHCcEEEEEecCcccchhhhhccccchhHHHHHhhCCCcccCCCCHHHHHHHHHHHHhcCC
Confidence 45789999999998753321110 00 0 00 01112345678999999999987543
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-09 Score=80.95 Aligned_cols=164 Identities=9% Similarity=-0.082 Sum_probs=96.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------cCCceEEEEcCCCC--HHHHHHHh--------cCCCEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------FGTYVESMAGDASN--KKFLKTAL--------RGVRSII 70 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~~~~v~~v~~Dl~d--~~~l~~~~--------~~~d~vi 70 (208)
+++|.||++++++|+++|++|++++|++++.... ....+.++..|+.| .+++.+++ ...|+||
T Consensus 13 G~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~~~~~id~vi 92 (239)
T PRK08703 13 GASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEATQGKLDGIV 92 (239)
T ss_pred CCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHHhCCCCCEEE
Confidence 3589999999999999999999999998653221 11245677889865 33443332 3569999
Q ss_pred EcCCC-----c----------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHH
Q 028525 71 CPSEG-----F----------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAE 117 (208)
Q Consensus 71 ~~~~~-----~----------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~ 117 (208)
++++. . + ...+.+.+..+++++||.....+......|..+++-. +.+
T Consensus 93 ~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sKaa~~~~~~ 172 (239)
T PRK08703 93 HCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPKAYWGGFGASKAALNYLCK 172 (239)
T ss_pred EeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccccCCCCccchHHhHHHHHHHHH
Confidence 77221 0 0 1112334556899999876543332233455433211 111
Q ss_pred HHHHHHHhc-CCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhC
Q 028525 118 QDESMLMAS-GIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALES 175 (208)
Q Consensus 118 ~~e~~l~~~-~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~ 175 (208)
.....+... +++++.|+||.+...... . . . .+.....+...+|++..+..++..
T Consensus 173 ~la~e~~~~~~i~v~~v~pG~v~t~~~~-~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 227 (239)
T PRK08703 173 VAADEWERFGNLRANVLVPGPINSPQRI-K-S-H-PGEAKSERKSYGDVLPAFVWWASA 227 (239)
T ss_pred HHHHHhccCCCeEEEEEecCcccCcccc-c-c-C-CCCCccccCCHHHHHHHHHHHhCc
Confidence 000111122 699999999998543221 1 1 1 112223456789999999988864
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-09 Score=92.26 Aligned_cols=182 Identities=13% Similarity=0.066 Sum_probs=113.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|+++.|+.++..+ ..+..+..+.+|++|++++.++++ ..|++|++++
T Consensus 276 Gas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~nAg~~~ 355 (520)
T PRK06484 276 GGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDVLVNNAGIAE 355 (520)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCcC
Confidence 458999999999999999999999998765422 223456778999999999888774 3699998722
Q ss_pred --Cch----------------------hhh-hhh-cCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhc
Q 028525 75 --GFI----------------------SNA-GSL-KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMAS 126 (208)
Q Consensus 75 --~~~----------------------~~a-~~~-~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~ 126 (208)
..+ .++ ... .+-.+||++||.....+..+...|...++-. +.+.....+...
T Consensus 356 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~ 435 (520)
T PRK06484 356 VFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLALPPRNAYCASKAAVTMLSRSLACEWAPA 435 (520)
T ss_pred CCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCCCCCCchhHHHHHHHHHHHHHHHHHhhhh
Confidence 110 011 111 2235899999987765444445565533211 111111223346
Q ss_pred CCCEEEEeccccccCCCCcc----cee---eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 127 GIPYTIIRTGVLQNTPGGKQ----GFQ---FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~~~~~----~~~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
+++++.|+||++........ ... +..........+.+|+|++++.++.++. ..|+.+.+.+|.
T Consensus 436 gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dia~~~~~l~s~~~~~~~G~~i~vdgg~ 507 (520)
T PRK06484 436 GIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIPLGRLGDPEEVAEAIAFLASPAASYVNGATLTVDGGW 507 (520)
T ss_pred CeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCcEEEECCCc
Confidence 89999999999854321110 000 0000111234577999999999887543 347777776554
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.18 E-value=7e-10 Score=96.77 Aligned_cols=173 Identities=8% Similarity=0.010 Sum_probs=106.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCC-----Cc----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSE-----GF---- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~-----~~---- 76 (208)
+++|+||++|++.|.++|++|... .+|++|.+.+...+. ++|+|||+++ ..
T Consensus 387 Ga~G~iG~~l~~~L~~~g~~v~~~------------------~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~ 448 (668)
T PLN02260 387 GRTGWIGGLLGKLCEKQGIAYEYG------------------KGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCE 448 (668)
T ss_pred CCCchHHHHHHHHHHhCCCeEEee------------------ccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHH
Confidence 469999999999999999987311 246888888888876 6799998821 10
Q ss_pred ----------------hhhhhhhcCCCeEEEeceeeeccC--------------CCCcccccchhHHHhHHHHHHHHHhc
Q 028525 77 ----------------ISNAGSLKGVQHVILLSQLSVYRG--------------SGGIQALMKGNARKLAEQDESMLMAS 126 (208)
Q Consensus 77 ----------------~~~a~~~~gv~~~v~~Ss~~~~~~--------------~~~~~~~~~~~~~~~~~~~e~~l~~~ 126 (208)
+.+++++.|++ ++++||..+|.. ..+..+....+. ..+..+|.+++..
T Consensus 449 ~~~~~~~~~N~~gt~~l~~a~~~~g~~-~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~~~~Yg-~sK~~~E~~~~~~ 526 (668)
T PLN02260 449 SHKVETIRANVVGTLTLADVCRENGLL-MMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFTGSFYS-KTKAMVEELLREY 526 (668)
T ss_pred hCHHHHHHHHhHHHHHHHHHHHHcCCe-EEEEcccceecCCcccccccCCCCCcCCCCCCCCChhh-HHHHHHHHHHHhh
Confidence 23457778886 556666555421 001111111111 1122467777765
Q ss_pred CCCEEEEeccccccCC-CCc-ccee----eecC-CcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHH
Q 028525 127 GIPYTIIRTGVLQNTP-GGK-QGFQ----FEEG-CAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKC 198 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~-~~~-~~~~----~~~~-~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~ 198 (208)
-++.++|+.+++... ... +.+. .... .-..+...++|++.++..+++.+ .+.+||++++. .+..|+++.
T Consensus 527 -~~~~~~r~~~~~~~~~~~~~nfv~~~~~~~~~~~vp~~~~~~~~~~~~~~~l~~~~--~~giyni~~~~~~s~~e~a~~ 603 (668)
T PLN02260 527 -DNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRN--LRGIWNFTNPGVVSHNEILEM 603 (668)
T ss_pred -hhheEEEEEEecccCCCCccHHHHHHhccceeeccCCCceehhhHHHHHHHHHHhC--CCceEEecCCCcCcHHHHHHH
Confidence 367778887776432 111 1110 0110 01134456788888878887642 25799999866 599999998
Q ss_pred HHHHh
Q 028525 199 FSRLM 203 (208)
Q Consensus 199 ~~~~~ 203 (208)
+.+..
T Consensus 604 i~~~~ 608 (668)
T PLN02260 604 YKDYI 608 (668)
T ss_pred HHHhc
Confidence 88766
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.1e-09 Score=79.58 Aligned_cols=171 Identities=10% Similarity=-0.003 Sum_probs=104.0
Q ss_pred chhhhccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHh---c--CCCEEEEcCCC-
Q 028525 2 GPMKKMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTAL---R--GVRSIICPSEG- 75 (208)
Q Consensus 2 ~~~~~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~---~--~~d~vi~~~~~- 75 (208)
+....-+++|.||++++++|+++|++|++++|+.++..+....+++++.+|++|.+++.+++ . .+|++|++.+.
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~~ 81 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAGVY 81 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCcc
Confidence 33333467999999999999999999999999977654443345788999999999988864 2 37999987211
Q ss_pred -----c----------------------hhhhhh---hcCCCeEEEeceeeeccCCCCc---ccccchhHHHhHHH-HHH
Q 028525 76 -----F----------------------ISNAGS---LKGVQHVILLSQLSVYRGSGGI---QALMKGNARKLAEQ-DES 121 (208)
Q Consensus 76 -----~----------------------~~~a~~---~~gv~~~v~~Ss~~~~~~~~~~---~~~~~~~~~~~~~~-~e~ 121 (208)
. +.+++. ...-.+++++||........+. ..|... |...+. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~Y~~s--K~a~~~~~~~ 159 (222)
T PRK06953 82 GPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDATGTTGWLYRAS--KAALNDALRA 159 (222)
T ss_pred cCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccccCCCccccHHh--HHHHHHHHHH
Confidence 0 001111 1123478888876433221111 235442 222111 111
Q ss_pred HHH-hcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEE
Q 028525 122 MLM-ASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEV 185 (208)
Q Consensus 122 ~l~-~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i 185 (208)
+-. ..+++++.++||++..... . ....+..++.+..+..++.... ..+..|..
T Consensus 160 ~~~~~~~i~v~~v~Pg~i~t~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (222)
T PRK06953 160 ASLQARHATCIALHPGWVRTDMG-G----------AQAALDPAQSVAGMRRVIAQATRRDNGRFFQY 215 (222)
T ss_pred HhhhccCcEEEEECCCeeecCCC-C----------CCCCCCHHHHHHHHHHHHHhcCcccCceEEee
Confidence 111 2478899999998744321 1 1224677888988888876443 23455543
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-09 Score=81.13 Aligned_cols=164 Identities=9% Similarity=-0.002 Sum_probs=100.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------cCCceEEEEcCCC--CHHHHHHHh-------cCCCEEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------FGTYVESMAGDAS--NKKFLKTAL-------RGVRSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~~~~v~~v~~Dl~--d~~~l~~~~-------~~~d~vi~ 71 (208)
+++|.||.+++++|+++|++|++++|+.++.... ...++.++.+|++ +.+++.+++ ..+|+||+
T Consensus 19 G~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~id~vi~ 98 (247)
T PRK08945 19 GAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQFGRLDGVLH 98 (247)
T ss_pred CCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4699999999999999999999999987653211 1235677788886 555444433 35799998
Q ss_pred cCCC-----c----------------------hhh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHH-H
Q 028525 72 PSEG-----F----------------------ISN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-D 119 (208)
Q Consensus 72 ~~~~-----~----------------------~~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~ 119 (208)
+++. . ..+ .+...+.++||++||............|...+ ...+. +
T Consensus 99 ~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK--~a~~~~~ 176 (247)
T PRK08945 99 NAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQGRANWGAYAVSK--FATEGMM 176 (247)
T ss_pred CCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCCCCCCcccHHHH--HHHHHHH
Confidence 7221 0 011 12345678999999876554333344555432 21111 1
Q ss_pred HHH---HHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 120 ESM---LMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 120 e~~---l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
+.+ +...+++++.++||.+....... .+ . ..........+|++..+..++.++.
T Consensus 177 ~~~~~~~~~~~i~~~~v~pg~v~t~~~~~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (247)
T PRK08945 177 QVLADEYQGTNLRVNCINPGGTRTAMRAS-AF--P-GEDPQKLKTPEDIMPLYLYLMGDDS 233 (247)
T ss_pred HHHHHHhcccCEEEEEEecCCccCcchhh-hc--C-cccccCCCCHHHHHHHHHHHhCccc
Confidence 111 22357899999999875422111 11 1 1112345678999999999886544
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-09 Score=83.10 Aligned_cols=189 Identities=16% Similarity=0.076 Sum_probs=110.9
Q ss_pred Cchhhhc-----cccCccHHHHHHHHHhCCCcEEEEEcCc---------hhhh----hh--cCCceEEEEcCCCCHHHHH
Q 028525 1 MGPMKKM-----KRKKMNFRMVILSLIVKRTRIKALVKDK---------RNAM----ES--FGTYVESMAGDASNKKFLK 60 (208)
Q Consensus 1 ~~~~~~~-----~~~G~iG~~l~~~Ll~~g~~V~~~~R~~---------~~~~----~~--~~~~v~~v~~Dl~d~~~l~ 60 (208)
|+.|+++ ++++.||++++++|+++|++|+++.|+. ++.. +. .+.++.++.+|++|.+++.
T Consensus 1 m~~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~ 80 (286)
T PRK07791 1 MGLLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAA 80 (286)
T ss_pred CCccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHH
Confidence 6666433 4688999999999999999999998765 3211 11 1335778899999998887
Q ss_pred HHhc-------CCCEEEEcCC----Cch----------------------hh----hhhhc---C---CCeEEEeceeee
Q 028525 61 TALR-------GVRSIICPSE----GFI----------------------SN----AGSLK---G---VQHVILLSQLSV 97 (208)
Q Consensus 61 ~~~~-------~~d~vi~~~~----~~~----------------------~~----a~~~~---g---v~~~v~~Ss~~~ 97 (208)
++++ .+|++|++++ ..+ .. .+... + -.+||++||...
T Consensus 81 ~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~ 160 (286)
T PRK07791 81 NLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAG 160 (286)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhh
Confidence 7663 4699998732 110 01 11111 1 248999999876
Q ss_pred ccCCCCcccccchhHHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCcc-ceeeecCCcC-CCcccHHHHHHHHHHHh
Q 028525 98 YRGSGGIQALMKGNARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQ-GFQFEEGCAA-NGSLSKEDAAFICVEAL 173 (208)
Q Consensus 98 ~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~-~~~~~~~~~~-~~~v~~~Dva~~~~~~l 173 (208)
..+......|...++-. +.+.....+...++++..|.|| +........ .......... ......+|+|.+++.++
T Consensus 161 ~~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~~~~~~~~~~~~~~~~~~~~~pedva~~~~~L~ 239 (286)
T PRK07791 161 LQGSVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMTETVFAEMMAKPEEGEFDAMAPENVSPLVVWLG 239 (286)
T ss_pred CcCCCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcchhhHHHHHhcCcccccCCCCHHHHHHHHHHHh
Confidence 54433344555533211 1111122344579999999998 422111110 0000011111 13457899999999988
Q ss_pred hCCC--CCCcEEEEeeCCc
Q 028525 174 ESIP--QTGLIFEVVNGEE 190 (208)
Q Consensus 174 ~~~~--~~~~~~~i~~~~~ 190 (208)
.... ..|+.+.+.+|..
T Consensus 240 s~~~~~itG~~i~vdgG~~ 258 (286)
T PRK07791 240 SAESRDVTGKVFEVEGGKI 258 (286)
T ss_pred CchhcCCCCcEEEEcCCce
Confidence 6543 3467777765543
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.5e-09 Score=81.70 Aligned_cols=179 Identities=13% Similarity=0.054 Sum_probs=102.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh----hh---h---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN----AM---E---SFGTYVESMAGDASNKKFLKTALR-------GVRSII 70 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~----~~---~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi 70 (208)
+++|.||+++++.|+++|++|+++.++.+. .. + ..+.++.++.+|++|++++.+++. +.|++|
T Consensus 15 Ga~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li 94 (257)
T PRK12744 15 GGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAAFGRPDIAI 94 (257)
T ss_pred CCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHhhCCCCEEE
Confidence 369999999999999999998887754321 11 1 113468889999999999988775 469999
Q ss_pred EcCCC----ch----------------------hhhh-hhc-CCCeEEEe-cee-eeccCCCCcccccchhHHH--hHHH
Q 028525 71 CPSEG----FI----------------------SNAG-SLK-GVQHVILL-SQL-SVYRGSGGIQALMKGNARK--LAEQ 118 (208)
Q Consensus 71 ~~~~~----~~----------------------~~a~-~~~-gv~~~v~~-Ss~-~~~~~~~~~~~~~~~~~~~--~~~~ 118 (208)
++++. .. ..++ ... ...+++++ ||. +.+. .....|...++-. +.+.
T Consensus 95 ~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~--~~~~~Y~~sK~a~~~~~~~ 172 (257)
T PRK12744 95 NTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFT--PFYSAYAGSKAPVEHFTRA 172 (257)
T ss_pred ECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccC--CCcccchhhHHHHHHHHHH
Confidence 87321 10 0111 111 12356665 443 3222 2233455433211 1111
Q ss_pred HHHHHHhcCCCEEEEeccccccCCCCc---cc-eeee------cCCcCCCcccHHHHHHHHHHHhhCCCC-CCcEEEEee
Q 028525 119 DESMLMASGIPYTIIRTGVLQNTPGGK---QG-FQFE------EGCAANGSLSKEDAAFICVEALESIPQ-TGLIFEVVN 187 (208)
Q Consensus 119 ~e~~l~~~~~~~tivRp~~~~~~~~~~---~~-~~~~------~~~~~~~~v~~~Dva~~~~~~l~~~~~-~~~~~~i~~ 187 (208)
....+...+++++.++||.+....... .. .... .+.........+|+|.++..+++.... .++.+.+.+
T Consensus 173 la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~g~~~~~~g 252 (257)
T PRK12744 173 ASKEFGARGISVTAVGPGPMDTPFFYPQEGAEAVAYHKTAAALSPFSKTGLTDIEDIVPFIRFLVTDGWWITGQTILING 252 (257)
T ss_pred HHHHhCcCceEEEEEecCccccchhccccccchhhcccccccccccccCCCCCHHHHHHHHHHhhcccceeecceEeecC
Confidence 111122357999999999985432111 00 0000 011112456789999999999885322 377888775
Q ss_pred C
Q 028525 188 G 188 (208)
Q Consensus 188 ~ 188 (208)
|
T Consensus 253 g 253 (257)
T PRK12744 253 G 253 (257)
T ss_pred C
Confidence 4
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.4e-09 Score=80.38 Aligned_cols=181 Identities=17% Similarity=0.085 Sum_probs=106.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEE-cCchhhh----hh--cCCceEEEEcCCCCHHHHHHHhc-------------CCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALV-KDKRNAM----ES--FGTYVESMAGDASNKKFLKTALR-------------GVR 67 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~-R~~~~~~----~~--~~~~v~~v~~Dl~d~~~l~~~~~-------------~~d 67 (208)
+.+|.||++++++|++.|++|.+.. |+.++.. +. .+..+..+..|++|.+++...++ ++|
T Consensus 11 Gas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~g~~~id 90 (252)
T PRK12747 11 GASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFD 90 (252)
T ss_pred CCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhhhcCCCCCC
Confidence 4689999999999999999998875 4433321 11 12346778899999877665432 579
Q ss_pred EEEEcCC----Cch----------------------hh-hhhh-cCCCeEEEeceeeeccCCCCcccccchhHHH--hHH
Q 028525 68 SIICPSE----GFI----------------------SN-AGSL-KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAE 117 (208)
Q Consensus 68 ~vi~~~~----~~~----------------------~~-a~~~-~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~ 117 (208)
++|++++ +.. .. ++.. ....+||++||.....+..+...|..+++.. +.+
T Consensus 91 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaa~~~~~~ 170 (252)
T PRK12747 91 ILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPDFIAYSMTKGAINTMTF 170 (252)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCCCCchhHHHHHHHHHHHHH
Confidence 9998722 110 00 1111 1224899999998765444444565533211 111
Q ss_pred HHHHHHHhcCCCEEEEeccccccCCCCc---cce--eeec-CCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 118 QDESMLMASGIPYTIIRTGVLQNTPGGK---QGF--QFEE-GCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 118 ~~e~~l~~~~~~~tivRp~~~~~~~~~~---~~~--~~~~-~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..-..+...+++++.|.||++....... ... .+.. ........+.+|+|+++..++.... ..|+.+.+.+|
T Consensus 171 ~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~vdgg 249 (252)
T PRK12747 171 TLAKQLGARGITVNAILPGFIKTDMNAELLSDPMMKQYATTISAFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGG 249 (252)
T ss_pred HHHHHHhHcCCEEEEEecCCccCchhhhcccCHHHHHHHHhcCcccCCCCHHHHHHHHHHHcCccccCcCCcEEEecCC
Confidence 1111233468999999999985432111 000 0000 0012334578999999998886443 24677776644
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.8e-10 Score=87.68 Aligned_cols=65 Identities=6% Similarity=0.008 Sum_probs=53.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---h---cCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---S---FGTYVESMAGDASNKKFLKTALRG-------VRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~---~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++++|+.++..+ . ....+.++.+|++|.+++.++++. +|++|++
T Consensus 13 Gas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~iD~li~n 90 (322)
T PRK07453 13 GASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKPLDALVCN 90 (322)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCCccEEEEC
Confidence 468999999999999999999999998765321 1 123588899999999998888753 7999987
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-09 Score=80.96 Aligned_cols=175 Identities=11% Similarity=0.030 Sum_probs=103.4
Q ss_pred CccHHHHHHHHHhCCCcEEEEEcCchh---hhhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC------
Q 028525 11 KMNFRMVILSLIVKRTRIKALVKDKRN---AMESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE------ 74 (208)
Q Consensus 11 G~iG~~l~~~Ll~~g~~V~~~~R~~~~---~~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~------ 74 (208)
+.||++++++|+++|++|++..|+... ..+.....+.++.+|++|++++.++++ ..|++|++++
T Consensus 19 ~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~ 98 (252)
T PRK06079 19 RSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGKIDGIVHAIAYAKKEE 98 (252)
T ss_pred CchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCCCEEEEccccccccc
Confidence 579999999999999999999987422 122223357889999999998887653 3699997621
Q ss_pred --Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHHHHH
Q 028525 75 --GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDESMLM 124 (208)
Q Consensus 75 --~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~~l~ 124 (208)
+.+ ...+.+ -.++|++||.+...+......|...++ ..+.+..-..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~--~g~Iv~iss~~~~~~~~~~~~Y~asKaal~~l~~~la~el~ 176 (252)
T PRK06079 99 LGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNP--GASIVTLTYFGSERAIPNYNVMGIAKAALESSVRYLARDLG 176 (252)
T ss_pred ccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhccc--CceEEEEeccCccccCCcchhhHHHHHHHHHHHHHHHHHhh
Confidence 110 001111 248999998765443222334444332 111111112344
Q ss_pred hcCCCEEEEeccccccCCCCc---ccee---eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEee
Q 028525 125 ASGIPYTIIRTGVLQNTPGGK---QGFQ---FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVN 187 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~---~~~~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~ 187 (208)
..|+++..|.||.+....... .... +....+.......+|+|.++..++..+. ..++++.+.+
T Consensus 177 ~~gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~~~~l~s~~~~~itG~~i~vdg 247 (252)
T PRK06079 177 KKGIRVNAISAGAVKTLAVTGIKGHKDLLKESDSRTVDGVGVTIEEVGNTAAFLLSDLSTGVTGDIIYVDK 247 (252)
T ss_pred hcCcEEEEEecCcccccccccCCChHHHHHHHHhcCcccCCCCHHHHHHHHHHHhCcccccccccEEEeCC
Confidence 578999999999985432111 0000 0000112334567999999999886543 2466666553
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-09 Score=82.46 Aligned_cols=179 Identities=13% Similarity=0.094 Sum_probs=106.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|+++.|+.++..+. .+..+..+.+|+.|.+++.++++ .+|++|++++
T Consensus 12 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~ 91 (262)
T TIGR03325 12 GGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCLIPNAGIWD 91 (262)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCEEEECCCCCc
Confidence 4689999999999999999999999987654332 23357889999999988877764 4699998732
Q ss_pred --Cch--------------------------hh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHH
Q 028525 75 --GFI--------------------------SN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESM 122 (208)
Q Consensus 75 --~~~--------------------------~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 122 (208)
+.. .+ .+.+.+ .++|++||...+.+......|..+++-... .+..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~~sS~~~~~~~~~~~~Y~~sKaa~~~-l~~~l 169 (262)
T TIGR03325 92 YSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASR-GSVIFTISNAGFYPNGGGPLYTAAKHAVVG-LVKEL 169 (262)
T ss_pred cCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcC-CCEEEEeccceecCCCCCchhHHHHHHHHH-HHHHH
Confidence 100 00 111222 478888877655433333445543321110 11111
Q ss_pred HHh--cCCCEEEEeccccccCCCCccce----------eeec---C-CcCCCcccHHHHHHHHHHHhhCCC---CCCcEE
Q 028525 123 LMA--SGIPYTIIRTGVLQNTPGGKQGF----------QFEE---G-CAANGSLSKEDAAFICVEALESIP---QTGLIF 183 (208)
Q Consensus 123 l~~--~~~~~tivRp~~~~~~~~~~~~~----------~~~~---~-~~~~~~v~~~Dva~~~~~~l~~~~---~~~~~~ 183 (208)
-++ ..+++..|.||.+.......... .... . .+.......+|+|.+++.++.++. ..++++
T Consensus 170 a~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~eva~~~~~l~s~~~~~~~tG~~i 249 (262)
T TIGR03325 170 AFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKSVLPIGRMPDAEEYTGAYVFFATRGDTVPATGAVL 249 (262)
T ss_pred HHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhhhhcCCCCCCCChHHhhhheeeeecCCCcccccceEE
Confidence 111 23899999999985432111000 0000 0 011223456999999988887532 246777
Q ss_pred EEeeC
Q 028525 184 EVVNG 188 (208)
Q Consensus 184 ~i~~~ 188 (208)
.+.+|
T Consensus 250 ~vdgg 254 (262)
T TIGR03325 250 NYDGG 254 (262)
T ss_pred EecCC
Confidence 76544
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.6e-09 Score=80.90 Aligned_cols=187 Identities=12% Similarity=0.083 Sum_probs=109.3
Q ss_pred Cchhhhc--cccC-----ccHHHHHHHHHhCCCcEEEEEcCch---hhhhhcC--CceEEEEcCCCCHHHHHHHhc----
Q 028525 1 MGPMKKM--KRKK-----MNFRMVILSLIVKRTRIKALVKDKR---NAMESFG--TYVESMAGDASNKKFLKTALR---- 64 (208)
Q Consensus 1 ~~~~~~~--~~~G-----~iG~~l~~~Ll~~g~~V~~~~R~~~---~~~~~~~--~~v~~v~~Dl~d~~~l~~~~~---- 64 (208)
||.|+++ ..|| .||++++++|+++|++|++..|+.. ...+... .....+++|++|++++.++++
T Consensus 1 ~~~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (261)
T PRK08690 1 MGFLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGK 80 (261)
T ss_pred CCccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHH
Confidence 7777544 3455 7999999999999999998876532 1222211 234578999999999888763
Q ss_pred ---CCCEEEEcCC--------C-chh--------------------------hhhhhcCCCeEEEeceeeeccCCCCccc
Q 028525 65 ---GVRSIICPSE--------G-FIS--------------------------NAGSLKGVQHVILLSQLSVYRGSGGIQA 106 (208)
Q Consensus 65 ---~~d~vi~~~~--------~-~~~--------------------------~a~~~~gv~~~v~~Ss~~~~~~~~~~~~ 106 (208)
+.|++|++++ + .+. ..++.. -.+||++||.+...+......
T Consensus 81 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~-~g~Iv~iss~~~~~~~~~~~~ 159 (261)
T PRK08690 81 HWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGR-NSAIVALSYLGAVRAIPNYNV 159 (261)
T ss_pred HhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhc-CcEEEEEcccccccCCCCccc
Confidence 4699997721 0 000 011222 247999998876543333334
Q ss_pred ccchhHH--HhHHHHHHHHHhcCCCEEEEeccccccCCCCc----cce--eeecCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 107 LMKGNAR--KLAEQDESMLMASGIPYTIIRTGVLQNTPGGK----QGF--QFEEGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 107 ~~~~~~~--~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~----~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
|...++- .+.+.....+...+++++.|.||++....... ... .+....+...+...+|+|.++..++.++..
T Consensus 160 Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~l~s~~~~ 239 (261)
T PRK08690 160 MGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNPLRRNVTIEEVGNTAAFLLSDLSS 239 (261)
T ss_pred chhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCchHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCcccC
Confidence 5443321 11111222344578999999999985422111 000 000111123345679999999999975432
Q ss_pred --CCcEEEEeeC
Q 028525 179 --TGLIFEVVNG 188 (208)
Q Consensus 179 --~~~~~~i~~~ 188 (208)
.++.+.+.+|
T Consensus 240 ~~tG~~i~vdgG 251 (261)
T PRK08690 240 GITGEITYVDGG 251 (261)
T ss_pred CcceeEEEEcCC
Confidence 4666666544
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.5e-09 Score=79.07 Aligned_cols=167 Identities=10% Similarity=0.021 Sum_probs=105.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc-CCceEEEEcCCCCHHHHHHHhc----CCCEEEEcCC------C-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF-GTYVESMAGDASNKKFLKTALR----GVRSIICPSE------G- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~----~~d~vi~~~~------~- 75 (208)
+++|.||+++++.|+++|++|+++.|+.++..+.. ..++.++++|++|++++.++++ ..|++|++++ .
T Consensus 7 Gas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag~~~~~~~~ 86 (223)
T PRK05884 7 GGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPAPSWDAGDP 86 (223)
T ss_pred eCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCCccccCCCC
Confidence 57899999999999999999999999877643321 1246788999999999988875 4799997621 0
Q ss_pred ---chh-------------------------hhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 76 ---FIS-------------------------NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 76 ---~~~-------------------------~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
.+. ..++. -.+||++||... .....|...++-. +.+.....+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~--~g~Iv~isS~~~----~~~~~Y~asKaal~~~~~~la~e~~~ 160 (223)
T PRK05884 87 RTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRS--GGSIISVVPENP----PAGSAEAAIKAALSNWTAGQAAVFGT 160 (223)
T ss_pred cccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCeEEEEecCCC----CCccccHHHHHHHHHHHHHHHHHhhh
Confidence 000 01121 258999998651 1123454433211 11112223445
Q ss_pred cCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+++++.|.||++....... . . . ......+|++..+..++..+. ..++.+.+.+|
T Consensus 161 ~gI~v~~v~PG~v~t~~~~~--~--~--~--~p~~~~~~ia~~~~~l~s~~~~~v~G~~i~vdgg 217 (223)
T PRK05884 161 RGITINAVACGRSVQPGYDG--L--S--R--TPPPVAAEIARLALFLTTPAARHITGQTLHVSHG 217 (223)
T ss_pred cCeEEEEEecCccCchhhhh--c--c--C--CCCCCHHHHHHHHHHHcCchhhccCCcEEEeCCC
Confidence 78999999999874321110 0 0 0 011267999999998886543 24666666544
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.2e-09 Score=80.32 Aligned_cols=176 Identities=11% Similarity=0.036 Sum_probs=101.9
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc------CCCEEEEcCCC-
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR------GVRSIICPSEG- 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~------~~d~vi~~~~~- 75 (208)
+.|.||++++++|. +|++|++++|+.++..+. .+.++.++.+|++|.+++.++++ .+|++|++++-
T Consensus 9 Ga~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li~nAG~~ 87 (275)
T PRK06940 9 GAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGLVHTAGVS 87 (275)
T ss_pred CCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 45789999999996 899999999987653211 12357889999999999888874 47999987321
Q ss_pred -c-----------------hh----hhhhhcCCCeEEEeceeeeccCC------------------------------CC
Q 028525 76 -F-----------------IS----NAGSLKGVQHVILLSQLSVYRGS------------------------------GG 103 (208)
Q Consensus 76 -~-----------------~~----~a~~~~gv~~~v~~Ss~~~~~~~------------------------------~~ 103 (208)
. +. ..+... .++|++||....... .+
T Consensus 88 ~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~--g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (275)
T PRK06940 88 PSQASPEAILKVDLYGTALVLEEFGKVIAPG--GAGVVIASQSGHRLPALTAEQERALATTPTEELLSLPFLQPDAIEDS 165 (275)
T ss_pred CchhhHHHHHHHhhHHHHHHHHHHHHHHhhC--CCEEEEEecccccCcccchhhhccccccccccccccccccccccCCc
Confidence 0 01 112222 356777776543211 01
Q ss_pred cccccchhHH--HhHHHHHHHHHhcCCCEEEEeccccccCCCCcccee---------eecCCcCCCcccHHHHHHHHHHH
Q 028525 104 IQALMKGNAR--KLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQ---------FEEGCAANGSLSKEDAAFICVEA 172 (208)
Q Consensus 104 ~~~~~~~~~~--~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~---------~~~~~~~~~~v~~~Dva~~~~~~ 172 (208)
...|..+++- .+.+.....+...+++++.|.||++........ +. +............+|+|++++.+
T Consensus 166 ~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~-~~~~~~~~~~~~~~~~p~~r~~~peeia~~~~fL 244 (275)
T PRK06940 166 LHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDE-LNGPRGDGYRNMFAKSPAGRPGTPDEIAALAEFL 244 (275)
T ss_pred cchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhh-hcCCchHHHHHHhhhCCcccCCCHHHHHHHHHHH
Confidence 1223332221 011111112334689999999998854321110 00 00000112345679999999998
Q ss_pred hhCCCC--CCcEEEEeeC
Q 028525 173 LESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 173 l~~~~~--~~~~~~i~~~ 188 (208)
+.+... .++.+.+.+|
T Consensus 245 ~s~~~~~itG~~i~vdgg 262 (275)
T PRK06940 245 MGPRGSFITGSDFLVDGG 262 (275)
T ss_pred cCcccCcccCceEEEcCC
Confidence 865432 4667766644
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.2e-09 Score=78.22 Aligned_cols=158 Identities=15% Similarity=0.151 Sum_probs=99.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc---CCCEEEEcCCC----ch---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR---GVRSIICPSEG----FI--- 77 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~---~~d~vi~~~~~----~~--- 77 (208)
+++|.||++++++|.++ ++|+++.|+.. .+.+|++|++++.++++ ++|++|++++. ..
T Consensus 7 Gas~giG~~la~~l~~~-~~vi~~~r~~~-----------~~~~D~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~ 74 (199)
T PRK07578 7 GASGTIGRAVVAELSKR-HEVITAGRSSG-----------DVQVDITDPASIRALFEKVGKVDAVVSAAGKVHFAPLAEM 74 (199)
T ss_pred cCCcHHHHHHHHHHHhc-CcEEEEecCCC-----------ceEecCCChHHHHHHHHhcCCCCEEEECCCCCCCCchhhC
Confidence 46899999999999998 99999998753 36789999999988876 57999987321 00
Q ss_pred -------------------hhhhhh--cCCCeEEEeceeeeccCCCCcccccchhHH--HhHHH-HHHHHHhcCCCEEEE
Q 028525 78 -------------------SNAGSL--KGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQ-DESMLMASGIPYTII 133 (208)
Q Consensus 78 -------------------~~a~~~--~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~-~e~~l~~~~~~~tiv 133 (208)
.+++.. .+..+|+++||.....+......|...++- .+.+. +.+ + ..+++++.|
T Consensus 75 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e-~-~~gi~v~~i 152 (199)
T PRK07578 75 TDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDEPIPGGASAATVNGALEGFVKAAALE-L-PRGIRINVV 152 (199)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCCCCchHHHHHHHHHHHHHHHHHHH-c-cCCeEEEEE
Confidence 011110 123479999987755433333344443221 11111 112 2 468999999
Q ss_pred eccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEE
Q 028525 134 RTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEV 185 (208)
Q Consensus 134 Rp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i 185 (208)
+||++.......... ......++.+|+|+++..+++.. ..|++|++
T Consensus 153 ~Pg~v~t~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~-~~g~~~~~ 198 (199)
T PRK07578 153 SPTVLTESLEKYGPF-----FPGFEPVPAARVALAYVRSVEGA-QTGEVYKV 198 (199)
T ss_pred cCCcccCchhhhhhc-----CCCCCCCCHHHHHHHHHHHhccc-eeeEEecc
Confidence 999884332111100 12245688999999999988743 44566553
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.5e-09 Score=80.04 Aligned_cols=185 Identities=9% Similarity=0.003 Sum_probs=107.0
Q ss_pred Cchhhhcc-----cc-----CccHHHHHHHHHhCCCcEEEEEcCchh---hhhhc--CCceEEEEcCCCCHHHHHHHhc-
Q 028525 1 MGPMKKMK-----RK-----KMNFRMVILSLIVKRTRIKALVKDKRN---AMESF--GTYVESMAGDASNKKFLKTALR- 64 (208)
Q Consensus 1 ~~~~~~~~-----~~-----G~iG~~l~~~Ll~~g~~V~~~~R~~~~---~~~~~--~~~v~~v~~Dl~d~~~l~~~~~- 64 (208)
|||+..|. .| +.||++++++|+++|++|.+..|+.+. ..+.. ...+.++.+|++|.+++.++++
T Consensus 2 ~~~~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 81 (258)
T PRK07533 2 MQPLLPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFAR 81 (258)
T ss_pred CCcccccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHH
Confidence 67776653 23 379999999999999999999987532 11111 1234678999999998887763
Q ss_pred ------CCCEEEEcCC--------Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCc
Q 028525 65 ------GVRSIICPSE--------GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGI 104 (208)
Q Consensus 65 ------~~d~vi~~~~--------~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~ 104 (208)
..|++|++++ +.+ ...+++ -.++|++||.+........
T Consensus 82 ~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~--~g~Ii~iss~~~~~~~~~~ 159 (258)
T PRK07533 82 IAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTN--GGSLLTMSYYGAEKVVENY 159 (258)
T ss_pred HHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhcc--CCEEEEEeccccccCCccc
Confidence 3699997621 110 011222 2478999987654332222
Q ss_pred ccccchhHH--HhHHHHHHHHHhcCCCEEEEeccccccCCCCcc---c-e--eeecCCcCCCcccHHHHHHHHHHHhhCC
Q 028525 105 QALMKGNAR--KLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQ---G-F--QFEEGCAANGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 105 ~~~~~~~~~--~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~---~-~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~ 176 (208)
..|...++- .+.+.....+...++++..|.||.+........ . . .+............+|+|.+++.++.++
T Consensus 160 ~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~~L~s~~ 239 (258)
T PRK07533 160 NLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDFDALLEDAAERAPLRRLVDIDDVGAVAAFLASDA 239 (258)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCcHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhChh
Confidence 334433221 111111223345789999999998854321110 0 0 0000011133456799999999988754
Q ss_pred C--CCCcEEEEee
Q 028525 177 P--QTGLIFEVVN 187 (208)
Q Consensus 177 ~--~~~~~~~i~~ 187 (208)
. ..|+.+.+.+
T Consensus 240 ~~~itG~~i~vdg 252 (258)
T PRK07533 240 ARRLTGNTLYIDG 252 (258)
T ss_pred hccccCcEEeeCC
Confidence 3 3466666553
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-09 Score=83.99 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=52.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----h---c-CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----S---F-GTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~---~-~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++++|+.++..+ . . +..+.++.+|+.|.+++.++++ +.|++|++
T Consensus 23 Gas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~n 102 (306)
T PRK06197 23 GANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYPRIDLLINN 102 (306)
T ss_pred CCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence 358999999999999999999999998765221 1 1 2357889999999999887764 47999987
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-08 Score=81.35 Aligned_cols=161 Identities=11% Similarity=-0.012 Sum_probs=98.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------c-CCceEEEEcCCCC--HHH---HHHHhcC--CCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------F-GTYVESMAGDASN--KKF---LKTALRG--VRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~-~~~v~~v~~Dl~d--~~~---l~~~~~~--~d~vi~~ 72 (208)
+.||.||++++++|+++|++|++++|++++..+. . ...+..+.+|+++ .+. +.+.+.+ +|++|++
T Consensus 60 GAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~didilVnn 139 (320)
T PLN02780 60 GPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGLDVGVLINN 139 (320)
T ss_pred CCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCCCccEEEEe
Confidence 4589999999999999999999999998763221 1 1246778889875 333 3344444 4588866
Q ss_pred CC------Cch--------------------------hhhhhhcCCCeEEEeceeeecc-CC-CCcccccchhHHH--hH
Q 028525 73 SE------GFI--------------------------SNAGSLKGVQHVILLSQLSVYR-GS-GGIQALMKGNARK--LA 116 (208)
Q Consensus 73 ~~------~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~-~~-~~~~~~~~~~~~~--~~ 116 (208)
++ ... ...+.+.+..+||++||...+. +. .....|..+++.. +.
T Consensus 140 AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~~~p~~~~Y~aSKaal~~~~ 219 (320)
T PLN02780 140 VGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIPSDPLYAVYAATKAYIDQFS 219 (320)
T ss_pred cCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCCccchHHHHHHHHHHHHH
Confidence 21 110 1123445667999999987643 21 2234454433211 11
Q ss_pred HHHHHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhC
Q 028525 117 EQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALES 175 (208)
Q Consensus 117 ~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~ 175 (208)
+.....++..|++++.+.||.+..+..... .......+.+++|+.++..+..
T Consensus 220 ~~L~~El~~~gI~V~~v~PG~v~T~~~~~~-------~~~~~~~~p~~~A~~~~~~~~~ 271 (320)
T PLN02780 220 RCLYVEYKKSGIDVQCQVPLYVATKMASIR-------RSSFLVPSSDGYARAALRWVGY 271 (320)
T ss_pred HHHHHHHhccCeEEEEEeeCceecCccccc-------CCCCCCCCHHHHHHHHHHHhCC
Confidence 112223445799999999999854332110 0011134779999999999864
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-08 Score=86.60 Aligned_cols=179 Identities=11% Similarity=0.012 Sum_probs=108.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~-- 75 (208)
+.++.||++++++|+++|++|+++.|+.++..+. .+.++.++.+|++|++++.++++ .+|++|++++.
T Consensus 12 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~li~nag~~~ 91 (520)
T PRK06484 12 GAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDVLVNNAGVTD 91 (520)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCEEEECCCcCC
Confidence 4688999999999999999999999987764322 23457789999999999888764 37999987321
Q ss_pred ----ch--------------------------hhhhhhcCCC-eEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 76 ----FI--------------------------SNAGSLKGVQ-HVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 76 ----~~--------------------------~~a~~~~gv~-~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
.+ ...+.+.+-. +||++||.....+......|...++-. +.+.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~e 171 (520)
T PRK06484 92 PTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVALPKRTAYSASKAAVISLTRSLACE 171 (520)
T ss_pred CCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 00 0112233333 899999887655443344555533211 11111122
Q ss_pred HHhcCCCEEEEeccccccCCCCc----ccee---eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEe
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGK----QGFQ---FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVV 186 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~----~~~~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~ 186 (208)
+...+++++.|+||.+....... .... +..........+.+|+|+++..++.++. ..++.+.+.
T Consensus 172 ~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~v~~l~~~~~~~~~G~~~~~~ 244 (520)
T PRK06484 172 WAAKGIRVNAVLPGYVRTQMVAELERAGKLDPSAVRSRIPLGRLGRPEEIAEAVFFLASDQASYITGSTLVVD 244 (520)
T ss_pred hhhhCeEEEEEccCCcCchhhhhhcccchhhhHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCceEEec
Confidence 34568999999999874322110 0000 0000111223467999999998886543 234444433
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.9e-09 Score=79.60 Aligned_cols=188 Identities=11% Similarity=0.076 Sum_probs=107.8
Q ss_pred Cchhhhc--cccC-----ccHHHHHHHHHhCCCcEEEEEcCch---hhhhhc--CCceEEEEcCCCCHHHHHHHhc----
Q 028525 1 MGPMKKM--KRKK-----MNFRMVILSLIVKRTRIKALVKDKR---NAMESF--GTYVESMAGDASNKKFLKTALR---- 64 (208)
Q Consensus 1 ~~~~~~~--~~~G-----~iG~~l~~~Ll~~g~~V~~~~R~~~---~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~---- 64 (208)
||+|+++ ..|| -||++++++|+++|++|++..|+.. ...+.. ...+..+.+|++|++++.++++
T Consensus 1 ~~~l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 80 (262)
T PRK07984 1 MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGK 80 (262)
T ss_pred CcccCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHh
Confidence 7887543 2344 6999999999999999998888731 122211 1235678899999999988773
Q ss_pred ---CCCEEEEcCC---C-----c-hh----------------------hhhhh--cCCCeEEEeceeeeccCCCCccccc
Q 028525 65 ---GVRSIICPSE---G-----F-IS----------------------NAGSL--KGVQHVILLSQLSVYRGSGGIQALM 108 (208)
Q Consensus 65 ---~~d~vi~~~~---~-----~-~~----------------------~a~~~--~gv~~~v~~Ss~~~~~~~~~~~~~~ 108 (208)
..|++|++++ . . .. .++.. ..-.++|++||.+...+......|.
T Consensus 81 ~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~~~~~~~~Y~ 160 (262)
T PRK07984 81 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMG 160 (262)
T ss_pred hcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCCcchhH
Confidence 3699997732 0 0 00 01100 1124799999876543322233444
Q ss_pred chhH--HHhHHHHHHHHHhcCCCEEEEeccccccCCCCc-cce-e-ee---cCCcCCCcccHHHHHHHHHHHhhCCC--C
Q 028525 109 KGNA--RKLAEQDESMLMASGIPYTIIRTGVLQNTPGGK-QGF-Q-FE---EGCAANGSLSKEDAAFICVEALESIP--Q 178 (208)
Q Consensus 109 ~~~~--~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~-~~~-~-~~---~~~~~~~~v~~~Dva~~~~~~l~~~~--~ 178 (208)
.+++ ..+.+.....+...++++..|.||++....... ... . .. ...+.......+|+|.+++.++.++. .
T Consensus 161 asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~~~~L~s~~~~~i 240 (262)
T PRK07984 161 LAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGI 240 (262)
T ss_pred HHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcCCchHHHHHHHHHcCCCcCCCCHHHHHHHHHHHcCcccccc
Confidence 4322 111111112233468999999999885421110 000 0 00 00112334567999999999887543 2
Q ss_pred CCcEEEEeeC
Q 028525 179 TGLIFEVVNG 188 (208)
Q Consensus 179 ~~~~~~i~~~ 188 (208)
.++.+.+.++
T Consensus 241 tG~~i~vdgg 250 (262)
T PRK07984 241 SGEVVHVDGG 250 (262)
T ss_pred cCcEEEECCC
Confidence 4666666544
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-08 Score=78.64 Aligned_cols=178 Identities=15% Similarity=0.060 Sum_probs=103.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCch-hh----hhh--cCCceEEEEcCCCCHHHHHHHhc------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKR-NA----MES--FGTYVESMAGDASNKKFLKTALR------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~-~~----~~~--~~~~v~~v~~Dl~d~~~l~~~~~------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++.+|+.. .. .+. .+.++.++.+|+.|.+++.++++ .+|++|++++
T Consensus 19 Gas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~iD~li~nAG 98 (306)
T PRK07792 19 GAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLGGLDIVVNNAG 98 (306)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 35899999999999999999999987543 21 111 13467889999999988888774 4799998722
Q ss_pred ----Cc----------------------hhhh----hhhc----C---CCeEEEeceeeeccCCCCcccccchhHHH--h
Q 028525 75 ----GF----------------------ISNA----GSLK----G---VQHVILLSQLSVYRGSGGIQALMKGNARK--L 115 (208)
Q Consensus 75 ----~~----------------------~~~a----~~~~----g---v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~ 115 (208)
.. +.++ +... + -.+||++||............|...++-. +
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~l 178 (306)
T PRK07792 99 ITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGPVGQANYGAAKAGITAL 178 (306)
T ss_pred CCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCCCCCchHHHHHHHHHHH
Confidence 10 0011 1111 1 24899999876554333334455433211 1
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccCCCCccceeeecC-CcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEe
Q 028525 116 AEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEG-CAANGSLSKEDAAFICVEALESIP--QTGLIFEVV 186 (208)
Q Consensus 116 ~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~-~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~ 186 (208)
.+..-..+...++++..|.|+. .........-..... .....+++.+|+|.++..++.... ..|+.|.+.
T Consensus 179 ~~~la~e~~~~gI~vn~i~Pg~-~t~~~~~~~~~~~~~~~~~~~~~~pe~va~~v~~L~s~~~~~~tG~~~~v~ 251 (306)
T PRK07792 179 TLSAARALGRYGVRANAICPRA-RTAMTADVFGDAPDVEAGGIDPLSPEHVVPLVQFLASPAAAEVNGQVFIVY 251 (306)
T ss_pred HHHHHHHhhhcCeEEEEECCCC-CCchhhhhccccchhhhhccCCCCHHHHHHHHHHHcCccccCCCCCEEEEc
Confidence 1111122334789999999984 211111100000000 112344678999999988876533 245565554
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-08 Score=76.59 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=102.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cC-CceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FG-TYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~-~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
++++.||++++++|. +|++|+++.|+.++..+. .+ ..+.++.+|+.|++++.++++ ..|++|+++
T Consensus 7 Gas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~na 85 (246)
T PRK05599 7 GGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISLAVVAF 85 (246)
T ss_pred eCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 568899999999998 599999999987664221 12 247789999999988887653 469999762
Q ss_pred CC----c--------------------------hhhhhhhcC-CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 74 EG----F--------------------------ISNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 74 ~~----~--------------------------~~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
+. . ....+.+.+ -.+||++||.....+......|...++-. +.+...
T Consensus 86 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la 165 (246)
T PRK05599 86 GILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRARRANYVYGSTKAGLDAFCQGLA 165 (246)
T ss_pred CcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCCcCCcchhhHHHHHHHHHHHHH
Confidence 21 0 001122232 35899999986654333344565543211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
..+...++.++.+.||.+....... .. . .......+|+|++++.++.++..
T Consensus 166 ~el~~~~I~v~~v~PG~v~T~~~~~--~~----~-~~~~~~pe~~a~~~~~~~~~~~~ 216 (246)
T PRK05599 166 DSLHGSHVRLIIARPGFVIGSMTTG--MK----P-APMSVYPRDVAAAVVSAITSSKR 216 (246)
T ss_pred HHhcCCCceEEEecCCcccchhhcC--CC----C-CCCCCCHHHHHHHHHHHHhcCCC
Confidence 2234468999999999885432111 10 0 11124679999999999987643
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-08 Score=77.99 Aligned_cols=177 Identities=13% Similarity=0.111 Sum_probs=103.3
Q ss_pred CccHHHHHHHHHhCCCcEEEEEcCc---hhhh---hhc-CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC--
Q 028525 11 KMNFRMVILSLIVKRTRIKALVKDK---RNAM---ESF-GTYVESMAGDASNKKFLKTALR-------GVRSIICPSE-- 74 (208)
Q Consensus 11 G~iG~~l~~~Ll~~g~~V~~~~R~~---~~~~---~~~-~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~-- 74 (208)
+.||++++++|+++|++|++..|+. .... +.. +.++.++.+|++|++++.++++ ..|++|++++
T Consensus 19 ~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ld~lv~nag~~ 98 (257)
T PRK08594 19 RSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEVGVIHGVAHCIAFA 98 (257)
T ss_pred CCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhCCCccEEEECcccC
Confidence 5899999999999999999987753 2221 111 2457889999999999887764 3699997621
Q ss_pred ------Cchh----------------------hh-hhh-cCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHH
Q 028525 75 ------GFIS----------------------NA-GSL-KGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESM 122 (208)
Q Consensus 75 ------~~~~----------------------~a-~~~-~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 122 (208)
+.+. .+ ... ..-.+||++||.....+......|...++- .+.+.....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~e 178 (257)
T PRK08594 99 NKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGERVVQNYNVMGVAKASLEASVKYLAND 178 (257)
T ss_pred CCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCccCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1100 00 111 112489999998755433333445543321 111112223
Q ss_pred HHhcCCCEEEEeccccccCCCCc-cce--e---eecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEee
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGK-QGF--Q---FEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVN 187 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~-~~~--~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~ 187 (208)
+...++++..|.||++....... ... . +............+|+|++++.++..... .++.+.+.+
T Consensus 179 l~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~~va~~~~~l~s~~~~~~tG~~~~~dg 251 (257)
T PRK08594 179 LGKDGIRVNAISAGPIRTLSAKGVGGFNSILKEIEERAPLRRTTTQEEVGDTAAFLFSDLSRGVTGENIHVDS 251 (257)
T ss_pred hhhcCCEEeeeecCcccCHhHhhhccccHHHHHHhhcCCccccCCHHHHHHHHHHHcCcccccccceEEEECC
Confidence 34578999999999885421110 000 0 00000112345679999999998875432 356666553
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.2e-09 Score=85.80 Aligned_cols=181 Identities=13% Similarity=0.039 Sum_probs=106.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh--hhhhc-CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN--AMESF-GTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~--~~~~~-~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~-- 75 (208)
+++|.||++++++|+++|++|++++|+... ..+.. ..+..++.+|++|.+++.++++ +.|+||++++.
T Consensus 217 GasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~vi~~AG~~~ 296 (450)
T PRK08261 217 GAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDIVVHNAGITR 296 (450)
T ss_pred cCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCEEEECCCcCC
Confidence 358999999999999999999999885432 22111 1235688899999998877764 47999987321
Q ss_pred --c----------------------hhhhhhh----cCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 76 --F----------------------ISNAGSL----KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 76 --~----------------------~~~a~~~----~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
. +.+++.. ..-.+||++||............|...++.. +.+.....++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~~~~~~Y~asKaal~~~~~~la~el~~ 376 (450)
T PRK08261 297 DKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGNRGQTNYAASKAGVIGLVQALAPLLAE 376 (450)
T ss_pred CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 0011111 1225899999876554333334454433211 11112223445
Q ss_pred cCCCEEEEeccccccCCCCccceeeec---C-CcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQGFQFEE---G-CAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~~~~~~~---~-~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.++..+.+.||.+.............. . ......-..+|+|.++..++.... ..++.+.++++
T Consensus 377 ~gi~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~l~~~~~p~dva~~~~~l~s~~~~~itG~~i~v~g~ 445 (450)
T PRK08261 377 RGITINAVAPGFIETQMTAAIPFATREAGRRMNSLQQGGLPVDVAETIAWLASPASGGVTGNVVRVCGQ 445 (450)
T ss_pred hCcEEEEEEeCcCcchhhhccchhHHHHHhhcCCcCCCCCHHHHHHHHHHHhChhhcCCCCCEEEECCC
Confidence 799999999998743221110000000 0 011112245899999998886433 24677777754
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-08 Score=78.53 Aligned_cols=175 Identities=11% Similarity=0.033 Sum_probs=101.8
Q ss_pred CccHHHHHHHHHhCCCcEEEEEcCch------hhhhhc--CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-
Q 028525 11 KMNFRMVILSLIVKRTRIKALVKDKR------NAMESF--GTYVESMAGDASNKKFLKTALR-------GVRSIICPSE- 74 (208)
Q Consensus 11 G~iG~~l~~~Ll~~g~~V~~~~R~~~------~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~- 74 (208)
+.||++++++|+++|++|.+..|+.+ ...+.. ...+.++.+|++|++++.++++ ..|++|++++
T Consensus 18 ~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nag~ 97 (258)
T PRK07370 18 RSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQKWGKLDILVHCLAF 97 (258)
T ss_pred CchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHHHcCCCCEEEEcccc
Confidence 47999999999999999988765432 122111 1246788999999999987764 4699997722
Q ss_pred -------Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHH
Q 028525 75 -------GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 75 -------~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~ 119 (208)
+.+ ...+++. .+||++||.....+......|...++-. +.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~--g~Iv~isS~~~~~~~~~~~~Y~asKaal~~l~~~l 175 (258)
T PRK07370 98 AGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEG--GSIVTLTYLGGVRAIPNYNVMGVAKAALEASVRYL 175 (258)
T ss_pred cCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhC--CeEEEEeccccccCCcccchhhHHHHHHHHHHHHH
Confidence 111 0112222 5899999976554333333454433211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCc-cc--eeee---cCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEee
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGK-QG--FQFE---EGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVN 187 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~-~~--~~~~---~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~ 187 (208)
...+...+++++.|.||++....... .. .... ...+.......+|+|.++..++.++.. .++.+.+.+
T Consensus 176 a~el~~~gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~fl~s~~~~~~tG~~i~vdg 251 (258)
T PRK07370 176 AAELGPKNIRVNAISAGPIRTLASSAVGGILDMIHHVEEKAPLRRTVTQTEVGNTAAFLLSDLASGITGQTIYVDA 251 (258)
T ss_pred HHHhCcCCeEEEEEecCcccCchhhccccchhhhhhhhhcCCcCcCCCHHHHHHHHHHHhChhhccccCcEEEECC
Confidence 12233468999999999985432110 00 0000 001112334569999999998875432 366666653
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.3e-08 Score=76.74 Aligned_cols=181 Identities=12% Similarity=0.032 Sum_probs=101.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCc-hhhh---hhc----CCceEEEEcCCCCHHHHH----HHh-------cCCCE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDK-RNAM---ESF----GTYVESMAGDASNKKFLK----TAL-------RGVRS 68 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~-~~~~---~~~----~~~v~~v~~Dl~d~~~l~----~~~-------~~~d~ 68 (208)
+++|.||++++++|+++|++|+++.|+. ++.. +.+ +..+.++.+|++|.+++. +.+ .++|+
T Consensus 8 Gas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~~g~iD~ 87 (267)
T TIGR02685 8 GAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFRAFGRCDV 87 (267)
T ss_pred CCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHHccCCceE
Confidence 5689999999999999999999987653 3321 111 234667899999987542 222 35799
Q ss_pred EEEcCCC----c-------------------h--------------hhh----hhhc------CCCeEEEeceeeeccCC
Q 028525 69 IICPSEG----F-------------------I--------------SNA----GSLK------GVQHVILLSQLSVYRGS 101 (208)
Q Consensus 69 vi~~~~~----~-------------------~--------------~~a----~~~~------gv~~~v~~Ss~~~~~~~ 101 (208)
+|++++. . . ..+ ++.. +..+++++||.....+.
T Consensus 88 lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s~~~~~~~ 167 (267)
T TIGR02685 88 LVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCDAMTDQPL 167 (267)
T ss_pred EEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehhhhccCCC
Confidence 9977321 0 0 000 1111 12367778776544333
Q ss_pred CCcccccchhHHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCccce--eeecCCcC-CCcccHHHHHHHHHHHhhCC
Q 028525 102 GGIQALMKGNARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGF--QFEEGCAA-NGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 102 ~~~~~~~~~~~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~--~~~~~~~~-~~~v~~~Dva~~~~~~l~~~ 176 (208)
.+..+|..++... +.+.....+...|++++.|+||++.......... .+...... ....+.+|++++++.++.++
T Consensus 168 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~ 247 (267)
T TIGR02685 168 LGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMPFEVQEDYRRKVPLGQREASAEQIADVVIFLVSPK 247 (267)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccchhHHHHHHHhCCCCcCCCCHHHHHHHHHHHhCcc
Confidence 3344555533211 1111112233468999999999874211111000 01111111 13457899999999988755
Q ss_pred C--CCCcEEEEeeC
Q 028525 177 P--QTGLIFEVVNG 188 (208)
Q Consensus 177 ~--~~~~~~~i~~~ 188 (208)
. ..++.+.+.++
T Consensus 248 ~~~~~G~~~~v~gg 261 (267)
T TIGR02685 248 AKYITGTCIKVDGG 261 (267)
T ss_pred cCCcccceEEECCc
Confidence 3 24666666544
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-08 Score=76.23 Aligned_cols=159 Identities=13% Similarity=0.026 Sum_probs=94.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc-CCceEEEEcCCCCHHHHHHHhc-----CCCEEEEcCCC------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF-GTYVESMAGDASNKKFLKTALR-----GVRSIICPSEG------ 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~-----~~d~vi~~~~~------ 75 (208)
+++|.+|++++++|+++|++|++++|++.+..... ..++.++.+|++|++++.++++ ++|+||++++.
T Consensus 8 G~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~ 87 (225)
T PRK08177 8 GASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAGISGPAHQ 87 (225)
T ss_pred CCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCcccCCCCC
Confidence 57999999999999999999999999876542221 1357888999999998888775 47999977211
Q ss_pred c----------------------hhhhhh---hcCCCeEEEeceeeeccCC---CCcccccchhHHH--hHHHHHHHHHh
Q 028525 76 F----------------------ISNAGS---LKGVQHVILLSQLSVYRGS---GGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 76 ~----------------------~~~a~~---~~gv~~~v~~Ss~~~~~~~---~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
. +.+++. ..+..+++++||....... .....|...++.. +.+.....+..
T Consensus 88 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~~~~~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~ 167 (225)
T PRK08177 88 SAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGSVELPDGGEMPLYKASKAALNSMTRSFVAELGE 167 (225)
T ss_pred CcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCccccccCCCCCccchHHHHHHHHHHHHHHHHHhhc
Confidence 0 001111 1233578888875432211 1222344322211 11111112223
Q ss_pred cCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
.++.++.|+||++.... ... ..+++....+..++.++++..
T Consensus 168 ~~i~v~~i~PG~i~t~~-~~~----------~~~~~~~~~~~~~~~~~~~~~ 208 (225)
T PRK08177 168 PTLTVLSMHPGWVKTDM-GGD----------NAPLDVETSVKGLVEQIEAAS 208 (225)
T ss_pred CCeEEEEEcCCceecCC-CCC----------CCCCCHHHHHHHHHHHHHhCC
Confidence 67999999999884322 111 112455556666676666554
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-08 Score=77.42 Aligned_cols=175 Identities=15% Similarity=0.085 Sum_probs=102.3
Q ss_pred CccHHHHHHHHHhCCCcEEEEEcCch---hhh---hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 11 KMNFRMVILSLIVKRTRIKALVKDKR---NAM---ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 11 G~iG~~l~~~Ll~~g~~V~~~~R~~~---~~~---~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+.||++++++|+++|++|++..|+.. ... +..+.. ..+.+|++|.+++.++++ .+|++|++++
T Consensus 17 ~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~~g~iDilVnnAG~~~ 95 (274)
T PRK08415 17 KSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKDLGKIDFIVHSVAFAP 95 (274)
T ss_pred CCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCccCc
Confidence 46999999999999999999988742 221 112223 578899999999887763 3599997722
Q ss_pred -----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHH
Q 028525 75 -----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDES 121 (208)
Q Consensus 75 -----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~ 121 (208)
+.+ ...+.+. .+||++||.+...+......|..+++- .+.+..-.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~--g~Iv~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~ 173 (274)
T PRK08415 96 KEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG--ASVLTLSYLGGVKYVPHYNVMGVAKAALESSVRYLAV 173 (274)
T ss_pred ccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC--CcEEEEecCCCccCCCcchhhhhHHHHHHHHHHHHHH
Confidence 110 0112222 489999987654332222345443321 11111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCc-cce----eee-cCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGK-QGF----QFE-EGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~-~~~----~~~-~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+...++++..|.||++....... ... .+. ...+.......+|+|.+++.++.++. ..++.+.+.+|
T Consensus 174 el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~r~~~pedva~~v~fL~s~~~~~itG~~i~vdGG 248 (274)
T PRK08415 174 DLGKKGIRVNAISAGPIKTLAASGIGDFRMILKWNEINAPLKKNVSIEEVGNSGMYLLSDLSSGVTGEIHYVDAG 248 (274)
T ss_pred HhhhcCeEEEEEecCccccHHHhccchhhHHhhhhhhhCchhccCCHHHHHHHHHHHhhhhhhcccccEEEEcCc
Confidence 234578999999999885421110 000 000 00111234567999999999987543 24666666544
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.6e-09 Score=79.29 Aligned_cols=170 Identities=15% Similarity=0.033 Sum_probs=100.6
Q ss_pred cccCccHHHHHHHHHh----CCCcEEEEEcCchhhhhh--------cCCceEEEEcCCCCHHHHHHHhcCC---------
Q 028525 8 KRKKMNFRMVILSLIV----KRTRIKALVKDKRNAMES--------FGTYVESMAGDASNKKFLKTALRGV--------- 66 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~----~g~~V~~~~R~~~~~~~~--------~~~~v~~v~~Dl~d~~~l~~~~~~~--------- 66 (208)
+.++.||.+++++|++ .|++|+++.|+.++..+. .+..+.++.+|++|++++.++++.+
T Consensus 7 Gas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~g~~~~ 86 (256)
T TIGR01500 7 GASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELPRPKGL 86 (256)
T ss_pred cCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhccccCCC
Confidence 5789999999999997 799999999987653221 1235788999999999888776421
Q ss_pred --CEEEEcCCC-----c-h---------------------------hhhhhhc-C-CCeEEEeceeeeccCCCCcccccc
Q 028525 67 --RSIICPSEG-----F-I---------------------------SNAGSLK-G-VQHVILLSQLSVYRGSGGIQALMK 109 (208)
Q Consensus 67 --d~vi~~~~~-----~-~---------------------------~~a~~~~-g-v~~~v~~Ss~~~~~~~~~~~~~~~ 109 (208)
|++|++++. . . ...++.. + -.+||++||.....+......|..
T Consensus 87 ~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~~~~~~~Y~a 166 (256)
T TIGR01500 87 QRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQPFKGWALYCA 166 (256)
T ss_pred ceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCCCCCchHHHH
Confidence 467765220 0 0 0112222 2 258999999876543333344544
Q ss_pred hhHHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCc------ccee---eecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 110 GNARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGK------QGFQ---FEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 110 ~~~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~------~~~~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
.++-. +.+.....+...++.++.+.||++....... .... +............+|+|..++.++++..
T Consensus 167 sKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~eva~~~~~l~~~~~ 245 (256)
T TIGR01500 167 GKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQELKAKGKLVDPKVSAQKLLSLLEKDK 245 (256)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Confidence 33211 1111111233468999999999985322110 0000 0000011235677999999999986443
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.1e-08 Score=74.45 Aligned_cols=156 Identities=8% Similarity=-0.038 Sum_probs=93.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchh-hhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC-----c------
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRN-AMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG-----F------ 76 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~-----~------ 76 (208)
++|.||++++++|+++|++|++++|+... ...........+.+|++|.+++.+.+.++|++|++++. .
T Consensus 22 as~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~~~~~~~~~~~~ 101 (245)
T PRK12367 22 ASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHGINPGGRQDPENIN 101 (245)
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCccCCcCCCCHHHHH
Confidence 58899999999999999999999998632 21111112357889999999999999889999987321 0
Q ss_pred ------------h----hhhhhhc---CCCeEEEeceeeeccCCCCcccccchhHHHh--HHHHHHH---HHhcCCCEEE
Q 028525 77 ------------I----SNAGSLK---GVQHVILLSQLSVYRGSGGIQALMKGNARKL--AEQDESM---LMASGIPYTI 132 (208)
Q Consensus 77 ------------~----~~a~~~~---gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~--~~~~e~~---l~~~~~~~ti 132 (208)
. ...+.+. +-..++..||.+...+. ....|..+++-.. ....+++ +...++.++.
T Consensus 102 ~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~~~-~~~~Y~aSKaal~~~~~l~~~l~~e~~~~~i~v~~ 180 (245)
T PRK12367 102 KALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQPA-LSPSYEISKRLIGQLVSLKKNLLDKNERKKLIIRK 180 (245)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccCCC-CCchhHHHHHHHHHHHHHHHHHHHhhcccccEEEE
Confidence 0 0112221 11234344444333221 2234555432110 0011111 2246888888
Q ss_pred EeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 133 IRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 133 vRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
+.||.+..... ....++.+|+|+.++.++.+++
T Consensus 181 ~~pg~~~t~~~------------~~~~~~~~~vA~~i~~~~~~~~ 213 (245)
T PRK12367 181 LILGPFRSELN------------PIGIMSADFVAKQILDQANLGL 213 (245)
T ss_pred ecCCCcccccC------------ccCCCCHHHHHHHHHHHHhcCC
Confidence 99987632110 0124678999999999997654
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.2e-08 Score=75.94 Aligned_cols=175 Identities=11% Similarity=0.060 Sum_probs=102.4
Q ss_pred ccHHHHHHHHHhCCCcEEEEEcCchh---hhhhcC--CceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-----
Q 028525 12 MNFRMVILSLIVKRTRIKALVKDKRN---AMESFG--TYVESMAGDASNKKFLKTALR-------GVRSIICPSE----- 74 (208)
Q Consensus 12 ~iG~~l~~~Ll~~g~~V~~~~R~~~~---~~~~~~--~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----- 74 (208)
.||++++++|+++|++|.+..|+... ..+... .....+.+|++|++++.++++ ..|++|++++
T Consensus 20 GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~ 99 (271)
T PRK06505 20 SIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWGKLDFVVHAIGFSDKN 99 (271)
T ss_pred cHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhCCCCEEEECCccCCCc
Confidence 79999999999999999999887532 111111 123468899999998887763 4699997722
Q ss_pred ---Cchh--------------------------hhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHHH
Q 028525 75 ---GFIS--------------------------NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESML 123 (208)
Q Consensus 75 ---~~~~--------------------------~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~l 123 (208)
+.+. ..+. .+ .++|++||.+..........|...++- .+.+..-..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~-~~-G~Iv~isS~~~~~~~~~~~~Y~asKaAl~~l~r~la~el 177 (271)
T PRK06505 100 ELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMP-DG-GSMLTLTYGGSTRVMPNYNVMGVAKAALEASVRYLAADY 177 (271)
T ss_pred cccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhc-cC-ceEEEEcCCCccccCCccchhhhhHHHHHHHHHHHHHHH
Confidence 1100 0122 12 489999987654332223345443321 1112122234
Q ss_pred HhcCCCEEEEeccccccCCCCc--cc---ee-eecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGK--QG---FQ-FEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~--~~---~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
...++++..|.||++....... .. .. .....+.......+|+|.+++.++.++.. .++.+.+.+|
T Consensus 178 ~~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~p~~r~~~peeva~~~~fL~s~~~~~itG~~i~vdgG 250 (271)
T PRK06505 178 GPQGIRVNAISAGPVRTLAGAGIGDARAIFSYQQRNSPLRRTVTIDEVGGSALYLLSDLSSGVTGEIHFVDSG 250 (271)
T ss_pred hhcCeEEEEEecCCccccccccCcchHHHHHHHhhcCCccccCCHHHHHHHHHHHhCccccccCceEEeecCC
Confidence 4578999999999985432111 00 00 00001112344679999999998875432 4676766654
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-07 Score=72.55 Aligned_cols=173 Identities=10% Similarity=0.017 Sum_probs=100.1
Q ss_pred cccCccHHHHHHHHHhCC--CcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHh---cCCCEEEEcCCCc------
Q 028525 8 KRKKMNFRMVILSLIVKR--TRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTAL---RGVRSIICPSEGF------ 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~---~~~d~vi~~~~~~------ 76 (208)
+++|.||++++++|++++ +.|....|+.... ....++.++++|++|.+++.++. .+.|++|++++..
T Consensus 7 Gas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~~aG~~~~~~~~ 84 (235)
T PRK09009 7 GGSGGIGKAMVKQLLERYPDATVHATYRHHKPD--FQHDNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVGMLHTQDKG 84 (235)
T ss_pred CCCChHHHHHHHHHHHhCCCCEEEEEccCCccc--cccCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCccccccccC
Confidence 579999999999999985 5565556654332 12346888999999998876654 4679999872210
Q ss_pred ----h--------------------------hhhhhhcCCCeEEEeceeeecc--C-CCCcccccchhHHH--hHHHHHH
Q 028525 77 ----I--------------------------SNAGSLKGVQHVILLSQLSVYR--G-SGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 77 ----~--------------------------~~a~~~~gv~~~v~~Ss~~~~~--~-~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+ ...+++.+..+++++||..... . ..+...|...++-. +.+..-.
T Consensus 85 ~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~ 164 (235)
T PRK09009 85 PEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVGSISDNRLGGWYSYRASKAALNMFLKTLSI 164 (235)
T ss_pred cccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecccccccCCCCCcchhhhhHHHHHHHHHHHHH
Confidence 0 0113334456888888743211 1 11222444432211 1111011
Q ss_pred HHHh--cCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEe
Q 028525 122 MLMA--SGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVV 186 (208)
Q Consensus 122 ~l~~--~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~ 186 (208)
.+.. .++.+..+.||++....... .. ........++.+|+|++++.++..+. ..+..+.+.
T Consensus 165 e~~~~~~~i~v~~v~PG~v~t~~~~~--~~--~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~ 229 (235)
T PRK09009 165 EWQRSLKHGVVLALHPGTTDTALSKP--FQ--QNVPKGKLFTPEYVAQCLLGIIANATPAQSGSFLAYD 229 (235)
T ss_pred HhhcccCCeEEEEEcccceecCCCcc--hh--hccccCCCCCHHHHHHHHHHHHHcCChhhCCcEEeeC
Confidence 1222 47889999999874433211 11 11122335788999999999998754 245555544
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-09 Score=81.93 Aligned_cols=177 Identities=14% Similarity=0.113 Sum_probs=107.9
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhh----hhhc-CCceEEEEcCCCCHHHHHHHh--------cCCCEEEEc---C
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNA----MESF-GTYVESMAGDASNKKFLKTAL--------RGVRSIICP---S 73 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~----~~~~-~~~v~~v~~Dl~d~~~l~~~~--------~~~d~vi~~---~ 73 (208)
++.||++++++|+++|++|++..|+.++. .+.. ..+.+++.+|++|++++.+++ ...|++|++ .
T Consensus 5 s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~~~ 84 (241)
T PF13561_consen 5 SSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNNAGIS 84 (241)
T ss_dssp TSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEESC
T ss_pred CCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEeccccc
Confidence 48899999999999999999999998862 1111 123567999999999888885 346999966 2
Q ss_pred CC-----ch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHH
Q 028525 74 EG-----FI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDE 120 (208)
Q Consensus 74 ~~-----~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e 120 (208)
+. .+ ...+++. .++|++||............|...++ ..+.+..-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gsii~iss~~~~~~~~~~~~y~~sKaal~~l~r~lA 162 (241)
T PF13561_consen 85 PPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKG--GSIINISSIAAQRPMPGYSAYSASKAALEGLTRSLA 162 (241)
T ss_dssp TGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHE--EEEEEEEEGGGTSBSTTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCcccccchhhcccCccchhhHHHHHHHHHHHHHHH
Confidence 21 10 0112223 47999998876554333334443321 11112112
Q ss_pred HHHHh-cCCCEEEEeccccccCCCCc----cce-e-eecCCcCCCcccHHHHHHHHHHHhhCCC-C-CCcEEEEeeC
Q 028525 121 SMLMA-SGIPYTIIRTGVLQNTPGGK----QGF-Q-FEEGCAANGSLSKEDAAFICVEALESIP-Q-TGLIFEVVNG 188 (208)
Q Consensus 121 ~~l~~-~~~~~tivRp~~~~~~~~~~----~~~-~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~-~~~~~~i~~~ 188 (208)
..+.. .++++..|.||++....... ..+ . +....+.......+|||.+++.++.+.. . .|+++.+.+|
T Consensus 163 ~el~~~~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~~pl~r~~~~~evA~~v~fL~s~~a~~itG~~i~vDGG 239 (241)
T PF13561_consen 163 KELAPKKGIRVNAVSPGPIETPMTERIPGNEEFLEELKKRIPLGRLGTPEEVANAVLFLASDAASYITGQVIPVDGG 239 (241)
T ss_dssp HHHGGHGTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHHSTTSSHBEHHHHHHHHHHHHSGGGTTGTSEEEEESTT
T ss_pred HHhccccCeeeeeecccceeccchhccccccchhhhhhhhhccCCCcCHHHHHHHHHHHhCccccCccCCeEEECCC
Confidence 23445 79999999999986422110 000 0 0011112333577999999999987653 2 4666666543
|
... |
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.5e-08 Score=74.94 Aligned_cols=178 Identities=13% Similarity=0.072 Sum_probs=100.3
Q ss_pred CccHHHHHHHHHhCCCcEEEEEcC---chhhhhhc--CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC---
Q 028525 11 KMNFRMVILSLIVKRTRIKALVKD---KRNAMESF--GTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG--- 75 (208)
Q Consensus 11 G~iG~~l~~~Ll~~g~~V~~~~R~---~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~--- 75 (208)
+.||++++++|+++|++|++..|. .+...+.. ......+.+|++|++++.++++ ..|++|++++.
T Consensus 18 ~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~ 97 (260)
T PRK06997 18 RSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWDGLDGLVHSIGFAPR 97 (260)
T ss_pred CcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhCCCcEEEEccccCCc
Confidence 479999999999999999987653 22222111 1123468899999999988874 36999976210
Q ss_pred ------chh----------------------h-hhhh-cCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHHH
Q 028525 76 ------FIS----------------------N-AGSL-KGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESML 123 (208)
Q Consensus 76 ------~~~----------------------~-a~~~-~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~l 123 (208)
... + ++.. .+-.++|++||.+...+......|...++- .+.+.....+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~~~~~~~~Y~asKaal~~l~~~la~el 177 (260)
T PRK06997 98 EAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERVVPNYNTMGLAKASLEASVRYLAVSL 177 (260)
T ss_pred cccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 000 0 0111 122589999988754432223344443321 1111111223
Q ss_pred HhcCCCEEEEeccccccCCCCcc----ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQ----GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~----~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
...+++++.|.||++........ .. .+....+.......+|+|+++..++.++. ..++.+.+.++
T Consensus 178 ~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~~~~l~s~~~~~itG~~i~vdgg 250 (260)
T PRK06997 178 GPKGIRANGISAGPIKTLAASGIKDFGKILDFVESNAPLRRNVTIEEVGNVAAFLLSDLASGVTGEITHVDSG 250 (260)
T ss_pred cccCeEEEEEeeCccccchhccccchhhHHHHHHhcCcccccCCHHHHHHHHHHHhCccccCcceeEEEEcCC
Confidence 34689999999998743211100 00 00000111234567999999999987543 24566666543
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-07 Score=73.72 Aligned_cols=175 Identities=10% Similarity=-0.011 Sum_probs=101.5
Q ss_pred ccHHHHHHHHHhCCCcEEEEEcCch---hhhhhcC--CceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-----
Q 028525 12 MNFRMVILSLIVKRTRIKALVKDKR---NAMESFG--TYVESMAGDASNKKFLKTALR-------GVRSIICPSE----- 74 (208)
Q Consensus 12 ~iG~~l~~~Ll~~g~~V~~~~R~~~---~~~~~~~--~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----- 74 (208)
.||++++++|+++|++|++..|+.. ...+... ....++.+|++|++++.++++ ..|++|++++
T Consensus 21 GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnag~~~~~ 100 (260)
T PRK06603 21 SISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWGSFDFLLHGMAFADKN 100 (260)
T ss_pred chHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcCCccEEEEccccCCcc
Confidence 5999999999999999999888732 1221111 123457899999999888774 3699997621
Q ss_pred ---Cchh--------------------------hhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHHH
Q 028525 75 ---GFIS--------------------------NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESML 123 (208)
Q Consensus 75 ---~~~~--------------------------~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~l 123 (208)
+.+. ..++. -.++|++||.+...+......|...++- .+.+..-..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~--~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~el 178 (260)
T PRK06603 101 ELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHD--GGSIVTLTYYGAEKVIPNYNVMGVAKAALEASVKYLANDM 178 (260)
T ss_pred cccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CceEEEEecCccccCCCcccchhhHHHHHHHHHHHHHHHh
Confidence 1100 01211 2489999987655433333445553321 1111122234
Q ss_pred HhcCCCEEEEeccccccCCCCc--c--ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC-C-CCcEEEEeeC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGK--Q--GF--QFEEGCAANGSLSKEDAAFICVEALESIP-Q-TGLIFEVVNG 188 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~--~--~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~-~~~~~~i~~~ 188 (208)
...++++..|.||.+....... . .. .+....+...+...+|+|++++.++.++. . .++.+.+.+|
T Consensus 179 ~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgG 251 (260)
T PRK06603 179 GENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATAPLKRNTTQEDVGGAAVYLFSELSKGVTGEIHYVDCG 251 (260)
T ss_pred hhcCeEEEEEecCcCcchhhhcCCCcHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCcccccCcceEEEeCCc
Confidence 4578999999999984321110 0 00 00000111233567999999999987543 2 3666666544
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-08 Score=75.50 Aligned_cols=167 Identities=10% Similarity=0.054 Sum_probs=96.3
Q ss_pred HHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc----CCCEEEEcCCC-----c-----------
Q 028525 17 VILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR----GVRSIICPSEG-----F----------- 76 (208)
Q Consensus 17 l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~----~~d~vi~~~~~-----~----------- 76 (208)
++++|+++|++|++++|+.++.. ..+++.+|++|.+++.++++ ++|++|++++. .
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~-----~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~~~~~~~~~~vN~~~~ 75 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMT-----LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPGTAPVELVARVNFLGL 75 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhh-----hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCCCCCHHHhhhhchHHH
Confidence 46889999999999999876632 13567899999999998886 47999987321 0
Q ss_pred --hhhhh-hh-cCCCeEEEeceeeeccCC---------------------------CCcccccchhHH--HhHHHHH-HH
Q 028525 77 --ISNAG-SL-KGVQHVILLSQLSVYRGS---------------------------GGIQALMKGNAR--KLAEQDE-SM 122 (208)
Q Consensus 77 --~~~a~-~~-~gv~~~v~~Ss~~~~~~~---------------------------~~~~~~~~~~~~--~~~~~~e-~~ 122 (208)
+.+.+ .. ..-.+||++||...+..+ .+..+|..++.- .+.+... ..
T Consensus 76 ~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~e 155 (241)
T PRK12428 76 RHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKEALILWTMRQAQPW 155 (241)
T ss_pred HHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 01111 11 112589999998776311 112233332211 0111111 22
Q ss_pred HHhcCCCEEEEeccccccCCCCccc-e----eeec-CCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQG-F----QFEE-GCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~~-~----~~~~-~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+...+++++.|+||.+......... . .... ........+.+|+|++++.++..+. ..++.+.+.+|
T Consensus 156 ~~~~girvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~va~~~~~l~s~~~~~~~G~~i~vdgg 229 (241)
T PRK12428 156 FGARGIRVNCVAPGPVFTPILGDFRSMLGQERVDSDAKRMGRPATADEQAAVLVFLCSDAARWINGVNLPVDGG 229 (241)
T ss_pred hhccCeEEEEeecCCccCcccccchhhhhhHhhhhcccccCCCCCHHHHHHHHHHHcChhhcCccCcEEEecCc
Confidence 3446899999999988543221100 0 0000 0011223467999999999886443 23555555433
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.9e-08 Score=74.61 Aligned_cols=176 Identities=13% Similarity=0.057 Sum_probs=100.6
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCc--hhh---hhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDK--RNA---MESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~--~~~---~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
++.||.+++++|+++|++|++..|+. +.. .+..+..+.++.+|++|++++.++++ .+|++|++++
T Consensus 18 s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g~iD~li~nAG~~~ 97 (256)
T PRK07889 18 DSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVDGLDGVVHSIGFAP 97 (256)
T ss_pred cchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcCCCcEEEEcccccc
Confidence 46899999999999999999998764 211 12223357789999999998887763 4699997621
Q ss_pred -----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHH
Q 028525 75 -----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDES 121 (208)
Q Consensus 75 -----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~ 121 (208)
+.+ ...++. -.++|++|+.+... ......|..+++ ..+.+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~--~g~Iv~is~~~~~~-~~~~~~Y~asKaal~~l~~~la~ 174 (256)
T PRK07889 98 QSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNE--GGSIVGLDFDATVA-WPAYDWMGVAKAALESTNRYLAR 174 (256)
T ss_pred ccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhccc--CceEEEEeeccccc-CCccchhHHHHHHHHHHHHHHHH
Confidence 110 001221 24788887643211 111112333221 111121223
Q ss_pred HHHhcCCCEEEEeccccccCCCCcc-c---e--eeecCCcCC-CcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQ-G---F--QFEEGCAAN-GSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~-~---~--~~~~~~~~~-~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+...+++++.|.||++........ . . .+....... .....+|+|++++.++.++. ..++.+.+.++
T Consensus 175 el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~evA~~v~~l~s~~~~~~tG~~i~vdgg 250 (256)
T PRK07889 175 DLGPRGIRVNLVAAGPIRTLAAKAIPGFELLEEGWDERAPLGWDVKDPTPVARAVVALLSDWFPATTGEIVHVDGG 250 (256)
T ss_pred HhhhcCeEEEeeccCcccChhhhcccCcHHHHHHHHhcCccccccCCHHHHHHHHHHHhCcccccccceEEEEcCc
Confidence 3445789999999998854221100 0 0 000000111 24577999999999987643 24666666533
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.8e-08 Score=71.70 Aligned_cols=130 Identities=19% Similarity=0.195 Sum_probs=84.6
Q ss_pred cccCccHHHHHHHHHhCCC-cEEEEEcCchhhh-------h--hcCCceEEEEcCCCCHHHHHHHhcC-------CCEEE
Q 028525 8 KRKKMNFRMVILSLIVKRT-RIKALVKDKRNAM-------E--SFGTYVESMAGDASNKKFLKTALRG-------VRSII 70 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~-------~--~~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi 70 (208)
+++|.+|++++++|+++|+ .|+++.|+..+.. . ..+.++.++.+|+++++++.+++.. .|.+|
T Consensus 7 Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li 86 (180)
T smart00822 7 GGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLGPLRGVI 86 (180)
T ss_pred cCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCeeEEE
Confidence 5789999999999999985 6888888754321 1 1234577889999999888877643 59999
Q ss_pred EcCC----Cc----------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHH
Q 028525 71 CPSE----GF----------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLM 124 (208)
Q Consensus 71 ~~~~----~~----------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~ 124 (208)
++++ .. +.+++...+.++++++||.....+......|.. .+...+..-+.++
T Consensus 87 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~~~~~~~~y~~--sk~~~~~~~~~~~ 164 (180)
T smart00822 87 HAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVLGNPGQANYAA--ANAFLDALAAHRR 164 (180)
T ss_pred EccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhcCCCCchhhHH--HHHHHHHHHHHHH
Confidence 7722 10 112344456778999998765433333334433 2222222224556
Q ss_pred hcCCCEEEEeccccc
Q 028525 125 ASGIPYTIIRTGVLQ 139 (208)
Q Consensus 125 ~~~~~~tivRp~~~~ 139 (208)
..+++++.+.||.+.
T Consensus 165 ~~~~~~~~~~~g~~~ 179 (180)
T smart00822 165 ARGLPATSINWGAWA 179 (180)
T ss_pred hcCCceEEEeecccc
Confidence 689999999998763
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-07 Score=73.53 Aligned_cols=169 Identities=9% Similarity=-0.069 Sum_probs=98.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCch----------hhh---hh---cCCceEEEEcCCCCHHHHHHHhc-------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKR----------NAM---ES---FGTYVESMAGDASNKKFLKTALR------- 64 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~----------~~~---~~---~~~~v~~v~~Dl~d~~~l~~~~~------- 64 (208)
++++.||++++++|++.|++|+++.|+.+ +.. +. .+..+.++.+|+.|++++.++++
T Consensus 15 Ggs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 94 (305)
T PRK08303 15 GATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVERIDREQG 94 (305)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35788999999999999999999999742 111 11 12346788999999999887763
Q ss_pred CCCEEEEcC-CC--------ch--------------------------hhhhhhcCCCeEEEeceeeec-cCC--CCccc
Q 028525 65 GVRSIICPS-EG--------FI--------------------------SNAGSLKGVQHVILLSQLSVY-RGS--GGIQA 106 (208)
Q Consensus 65 ~~d~vi~~~-~~--------~~--------------------------~~a~~~~gv~~~v~~Ss~~~~-~~~--~~~~~ 106 (208)
..|++|+++ +. .+ ...+.+.+-.+||++||.... ... .....
T Consensus 95 ~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~~~~~~~~~~~ 174 (305)
T PRK08303 95 RLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEYNATHYRLSVF 174 (305)
T ss_pred CccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCccccccCcCCCCcch
Confidence 469999764 31 10 011223334589999886432 211 11223
Q ss_pred ccchhHHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCc----cceeeec---CCc-CCCcccHHHHHHHHHHHhhCC
Q 028525 107 LMKGNARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGK----QGFQFEE---GCA-ANGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 107 ~~~~~~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~----~~~~~~~---~~~-~~~~v~~~Dva~~~~~~l~~~ 176 (208)
|...++-. +.+..-..+...++++..|.||++....... ....+.. ... .......+|+|.+++.++.++
T Consensus 175 Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~p~~~~~~~peevA~~v~fL~s~~ 254 (305)
T PRK08303 175 YDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSEMMLDAFGVTEENWRDALAKEPHFAISETPRYVGRAVAALAADP 254 (305)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccHHHHHhhccCccchhhhhccccccccCCCHHHHHHHHHHHHcCc
Confidence 44433211 1111112244568999999999874321100 0000000 001 112235799999999998765
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-07 Score=74.36 Aligned_cols=178 Identities=10% Similarity=0.064 Sum_probs=102.3
Q ss_pred CccHHHHHHHHHhCCCcEEEEEcCch---hhhhhcC--CceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----
Q 028525 11 KMNFRMVILSLIVKRTRIKALVKDKR---NAMESFG--TYVESMAGDASNKKFLKTALR-------GVRSIICPSE---- 74 (208)
Q Consensus 11 G~iG~~l~~~Ll~~g~~V~~~~R~~~---~~~~~~~--~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~---- 74 (208)
+.||.+++++|+++|++|++..|+.. +..+... .....+.+|++|++++.++++ ..|++|++++
T Consensus 22 ~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAG~~~~ 101 (272)
T PRK08159 22 RSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKWGKLDFVVHAIGFSDK 101 (272)
T ss_pred CcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhcCCCcEEEECCcccCc
Confidence 57999999999999999998877632 2221111 135578999999999888763 3699997721
Q ss_pred ----Cch----------------------hhh-hhh-cCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHH
Q 028525 75 ----GFI----------------------SNA-GSL-KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLM 124 (208)
Q Consensus 75 ----~~~----------------------~~a-~~~-~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~ 124 (208)
+.+ ..+ ... .+-.++|++||.+...+......|..+++-. +.+.....+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~p~~~~Y~asKaal~~l~~~la~el~ 181 (272)
T PRK08159 102 DELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEKVMPHYNVMGVAKAALEASVKYLAVDLG 181 (272)
T ss_pred cccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccccCCCcchhhhhHHHHHHHHHHHHHHHhc
Confidence 110 000 111 1125899999876554322233444433211 1111112234
Q ss_pred hcCCCEEEEeccccccCCCCc-cce----eeec-CCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 125 ASGIPYTIIRTGVLQNTPGGK-QGF----QFEE-GCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~-~~~----~~~~-~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..++++..|.||++....... ... .+.. ..+.......+|+|++++.++..+. ..++.+.+.+|
T Consensus 182 ~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~~~~L~s~~~~~itG~~i~vdgG 253 (272)
T PRK08159 182 PKNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLRRTVTIEEVGDSALYLLSDLSRGVTGEVHHVDSG 253 (272)
T ss_pred ccCeEEEEeecCCcCCHHHhcCCcchHHHHHHHhCCcccccCCHHHHHHHHHHHhCccccCccceEEEECCC
Confidence 578999999999985321110 000 0000 0111234567999999999987543 24666666654
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.8e-08 Score=76.25 Aligned_cols=65 Identities=9% Similarity=0.002 Sum_probs=51.8
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
++++.||.+++++|+++| ++|++++|+.++..+. .+..+.++.+|++|.+++.++++ +.|++|++
T Consensus 10 Gas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~iD~lI~n 88 (314)
T TIGR01289 10 GASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRPLDALVCN 88 (314)
T ss_pred CCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 568999999999999999 9999999987653211 12357788999999998877763 47999977
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-07 Score=74.04 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=54.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc---CCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF---GTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++++|+.++..... ...+..+.+|++|++++.+.+.++|++|++
T Consensus 185 GASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInn 252 (406)
T PRK07424 185 GASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIIN 252 (406)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEEC
Confidence 46899999999999999999999999876543221 224678899999999999999999999976
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.7e-07 Score=69.61 Aligned_cols=168 Identities=15% Similarity=0.101 Sum_probs=99.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhh-------hhhcCCc-eEEEEcCCCCHHHHHHHh-------cCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNA-------MESFGTY-VESMAGDASNKKFLKTAL-------RGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-------~~~~~~~-v~~v~~Dl~d~~~l~~~~-------~~~d~vi~~~ 73 (208)
.+..||.+++.+|.++|.++..+.|...+. .+..+.. +.++++|++|.+++.+++ .++|++|+++
T Consensus 20 ASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNNA 99 (282)
T KOG1205|consen 20 ASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNNA 99 (282)
T ss_pred CCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEecC
Confidence 377899999999999999888887765442 2223334 899999999999999765 4679999762
Q ss_pred C----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHH
Q 028525 74 E----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESML 123 (208)
Q Consensus 74 ~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l 123 (208)
+ +. ....+++.+-.|||.+||+....+......|.+++ +.....-+.|
T Consensus 100 G~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~~~~Y~ASK--~Al~~f~etL 177 (282)
T KOG1205|consen 100 GISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFRSIYSASK--HALEGFFETL 177 (282)
T ss_pred ccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCcccccchHH--HHHHHHHHHH
Confidence 2 11 01224556556999999998765443334566533 3221212334
Q ss_pred Hh----cCCCEE-EEeccccccCCCCccceeeecC-CcCCCcccHHHHHH--HHHHHhhCCCCC
Q 028525 124 MA----SGIPYT-IIRTGVLQNTPGGKQGFQFEEG-CAANGSLSKEDAAF--ICVEALESIPQT 179 (208)
Q Consensus 124 ~~----~~~~~t-ivRp~~~~~~~~~~~~~~~~~~-~~~~~~v~~~Dva~--~~~~~l~~~~~~ 179 (208)
|. .+..+. .|-||++........ +....+ .........+|++. .+..++..+...
T Consensus 178 R~El~~~~~~i~i~V~PG~V~Te~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 240 (282)
T KOG1205|consen 178 RQELIPLGTIIIILVSPGPIETEFTGKE-LLGEEGKSQQGPFLRTEDVADPEAVAYAISTPPCR 240 (282)
T ss_pred HHHhhccCceEEEEEecCceeecccchh-hccccccccccchhhhhhhhhHHHHHHHHhcCccc
Confidence 32 232222 588999865433222 111111 11122333466654 666666666543
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.3e-07 Score=69.58 Aligned_cols=156 Identities=5% Similarity=-0.036 Sum_probs=96.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc--------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR--------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~--------~~d~vi~~~ 73 (208)
++++.||++++++|+++|++|.++.|+.++..+. .+..+..+..|+.|++++.++++ ..|++|+++
T Consensus 12 Gas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~iD~li~na 91 (227)
T PRK08862 12 SAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRAPDVLVNNW 91 (227)
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 4588999999999999999999999988763221 13356778899999999887652 579999873
Q ss_pred CC-----ch--------------------------hhhhhhcC-CCeEEEeceeeeccCCCCcccccchhHH--HhHHHH
Q 028525 74 EG-----FI--------------------------SNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQD 119 (208)
Q Consensus 74 ~~-----~~--------------------------~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~ 119 (208)
+. .+ ...+.+.+ -..+|++||..... +...|...++- .+.+..
T Consensus 92 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~---~~~~Y~asKaal~~~~~~l 168 (227)
T PRK08862 92 TSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDHQ---DLTGVESSNALVSGFTHSW 168 (227)
T ss_pred ccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC---CcchhHHHHHHHHHHHHHH
Confidence 21 10 01122332 35899999865432 22345443321 111112
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCccc-HHHHHHHHHHHhhCC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLS-KEDAAFICVEALESI 176 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~-~~Dva~~~~~~l~~~ 176 (208)
...+...++++..|.||++.... .... ..|.. .+|++.+...++.++
T Consensus 169 a~el~~~~Irvn~v~PG~i~t~~-~~~~---------~~~~~~~~~~~~~~~~l~~~~ 216 (227)
T PRK08862 169 AKELTPFNIRVGGVVPSIFSANG-ELDA---------VHWAEIQDELIRNTEYIVANE 216 (227)
T ss_pred HHHHhhcCcEEEEEecCcCcCCC-ccCH---------HHHHHHHHHHHhheeEEEecc
Confidence 23344578999999999975431 1100 01111 278888777777533
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=75.57 Aligned_cols=65 Identities=9% Similarity=-0.072 Sum_probs=52.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----h---c-CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----S---F-GTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~---~-~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
++|+.||.+++++|+++|++|++++|+.++..+ . . +..+.++.+|+.|.+++.++++ .+|++|++
T Consensus 21 Gas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~~iD~li~n 100 (313)
T PRK05854 21 GASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGRPIHLLINN 100 (313)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCCCccEEEEC
Confidence 469999999999999999999999998765321 1 1 2357889999999999887764 36999977
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.5e-07 Score=73.40 Aligned_cols=65 Identities=9% Similarity=-0.020 Sum_probs=51.8
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhh---c---CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKRNAMES---F---GTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~---~---~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
++++.||.+++++|+++| ++|++..|+.++..+. . +..+.++.+|+.|.+++.++++ ..|++|++
T Consensus 4 Gas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lInn 82 (308)
T PLN00015 4 GASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLVCN 82 (308)
T ss_pred CCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEEEC
Confidence 568999999999999999 9999999987653211 1 2357888999999999877764 46999976
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.7e-07 Score=72.62 Aligned_cols=190 Identities=16% Similarity=0.176 Sum_probs=115.3
Q ss_pred cccCccHHHHHHHHHhCC---CcEEEEEcCchh------hhhh------------cC---CceEEEEcCCCC------HH
Q 028525 8 KRKKMNFRMVILSLIVKR---TRIKALVKDKRN------AMES------------FG---TYVESMAGDASN------KK 57 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g---~~V~~~~R~~~~------~~~~------------~~---~~v~~v~~Dl~d------~~ 57 (208)
++||++|+-+++.|+..- .+++.+.|.... ...+ .+ ..+..+.||+.+ ++
T Consensus 19 G~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~~~~LGis~~ 98 (467)
T KOG1221|consen 19 GATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDISEPDLGISES 98 (467)
T ss_pred cccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccccCcccCCChH
Confidence 579999999999999753 478888886532 1111 11 357889999976 46
Q ss_pred HHHHHhcCCCEEEEcCCC--c-----------------hhhhhhh-cCCCeEEEeceeeecc-----------CC---CC
Q 028525 58 FLKTALRGVRSIICPSEG--F-----------------ISNAGSL-KGVQHVILLSQLSVYR-----------GS---GG 103 (208)
Q Consensus 58 ~l~~~~~~~d~vi~~~~~--~-----------------~~~a~~~-~gv~~~v~~Ss~~~~~-----------~~---~~ 103 (208)
++....+.+|+|||+++. + ..+.|++ ...+-++++|+..+.- .. .+
T Consensus 99 D~~~l~~eV~ivih~AAtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~i~E~~y~~~~~~~~ 178 (467)
T KOG1221|consen 99 DLRTLADEVNIVIHSAATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGHIEEKPYPMPETCNP 178 (467)
T ss_pred HHHHHHhcCCEEEEeeeeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheecccccccccccCccccCCH
Confidence 666677889999987321 1 1223443 3567899999875541 00 00
Q ss_pred --------------------------cccccchhHHHhHHHHHHHHHh--cCCCEEEEeccccccCCC-----------C
Q 028525 104 --------------------------IQALMKGNARKLAEQDESMLMA--SGIPYTIIRTGVLQNTPG-----------G 144 (208)
Q Consensus 104 --------------------------~~~~~~~~~~~~~~~~e~~l~~--~~~~~tivRp~~~~~~~~-----------~ 144 (208)
++.|.- .|. .+|+.+.+ .+++.+|+||+.+..... .
T Consensus 179 ~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtf--TKa---l~E~~i~~~~~~lPivIiRPsiI~st~~EP~pGWidn~~g 253 (467)
T KOG1221|consen 179 EKILKLDENLSDELLDQKAPKLLGGWPNTYTF--TKA---LAEMVIQKEAENLPLVIIRPSIITSTYKEPFPGWIDNLNG 253 (467)
T ss_pred HHHHhhhccchHHHHHHhhHHhcCCCCCceee--hHh---hHHHHHHhhccCCCeEEEcCCceeccccCCCCCccccCCC
Confidence 011111 111 45777764 689999999988764210 0
Q ss_pred cccee-----------eecCCcCCCcccHHHHHHHHHHHhh-C----CCCCCcEEEEeeCCc---chhhHHHHHHHH
Q 028525 145 KQGFQ-----------FEEGCAANGSLSKEDAAFICVEALE-S----IPQTGLIFEVVNGEE---KVSDWKKCFSRL 202 (208)
Q Consensus 145 ~~~~~-----------~~~~~~~~~~v~~~Dva~~~~~~l~-~----~~~~~~~~~i~~~~~---~~~e~~~~~~~~ 202 (208)
..++. +..+......|++|.++.+++.+.- . +.....+||++++.. +..++.+.....
T Consensus 254 p~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~~~~e~~~~~ 330 (467)
T KOG1221|consen 254 PDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWGDFIELALRY 330 (467)
T ss_pred CceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHHHHHHHHHHh
Confidence 01111 1222334567899999999875541 1 112356999998664 566666655544
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-06 Score=65.50 Aligned_cols=190 Identities=11% Similarity=0.023 Sum_probs=108.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhh------------hhcCCceEEEEcCCCCHHHHHHHhcCC--CEEEEc--
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAM------------ESFGTYVESMAGDASNKKFLKTALRGV--RSIICP-- 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~------------~~~~~~v~~v~~Dl~d~~~l~~~~~~~--d~vi~~-- 72 (208)
.||+=|++|++.||..||+|.++.|+.+... ...+..+..+.+|++|...+.+.+.-+ +-|++.
T Consensus 36 ItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ikPtEiYnLaA 115 (376)
T KOG1372|consen 36 ITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIKPTEVYNLAA 115 (376)
T ss_pred ccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccCchhhhhhhh
Confidence 5999999999999999999999999876521 112346889999999999998887532 333322
Q ss_pred ---------CCCc-----------hhhhhhhcCC---CeEEEeceeeeccC-----------CCCcccccchhHHHhHH-
Q 028525 73 ---------SEGF-----------ISNAGSLKGV---QHVILLSQLSVYRG-----------SGGIQALMKGNARKLAE- 117 (208)
Q Consensus 73 ---------~~~~-----------~~~a~~~~gv---~~~v~~Ss~~~~~~-----------~~~~~~~~~~~~~~~~~- 117 (208)
.+.. +.++.+..+. -||-..|+.--|+. ..|..||.. ++.+..
T Consensus 116 QSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~TPFyPRSPYa~--aKmy~~W 193 (376)
T KOG1372|consen 116 QSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSETTPFYPRSPYAA--AKMYGYW 193 (376)
T ss_pred hcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccCCCCCCCChhHH--hhhhheE
Confidence 1111 3455555443 26766777655541 112223322 111110
Q ss_pred HHHHHHHhcCCCEEEEeccccccCCC--Cc--------------------cceeeecCCcCCCcccHHHHHHHHHHHhhC
Q 028525 118 QDESMLMASGIPYTIIRTGVLQNTPG--GK--------------------QGFQFEEGCAANGSLSKEDAAFICVEALES 175 (208)
Q Consensus 118 ~~e~~l~~~~~~~tivRp~~~~~~~~--~~--------------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~ 175 (208)
..-.|=.++++- -.-|.+++... .+ ..+.++.-.....|=+-.|-.+++..+|++
T Consensus 194 ivvNyREAYnmf---AcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA~dYVEAMW~mLQ~ 270 (376)
T KOG1372|consen 194 IVVNYREAYNMF---ACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGHAGDYVEAMWLMLQQ 270 (376)
T ss_pred EEEEhHHhhcce---eeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccchhHHHHHHHHHHHhc
Confidence 000000011211 11344444322 11 111222223335566778999999999987
Q ss_pred CCCCCcEEEEeeCCc-chhhHHHHHHHHhhh
Q 028525 176 IPQTGLIFEVVNGEE-KVSDWKKCFSRLMEK 205 (208)
Q Consensus 176 ~~~~~~~~~i~~~~~-~~~e~~~~~~~~~~~ 205 (208)
+.. ..|-|..|.. +++|+.+.--...|+
T Consensus 271 d~P--dDfViATge~hsVrEF~~~aF~~ig~ 299 (376)
T KOG1372|consen 271 DSP--DDFVIATGEQHSVREFCNLAFAEIGE 299 (376)
T ss_pred CCC--CceEEecCCcccHHHHHHHHHHhhCc
Confidence 764 4577777775 999999876665553
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.3e-07 Score=65.66 Aligned_cols=129 Identities=20% Similarity=0.178 Sum_probs=80.6
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCch-h------hhh--hcCCceEEEEcCCCCHHHHHHHhcCC-------CEEE
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKR-N------AME--SFGTYVESMAGDASNKKFLKTALRGV-------RSII 70 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~-~------~~~--~~~~~v~~v~~Dl~d~~~l~~~~~~~-------d~vi 70 (208)
+++|.+|..+++.|++++ .+|+.+.|+.. . ..+ ..+..+.++.+|++|++++.++++.+ +.||
T Consensus 7 GG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~i~gVi 86 (181)
T PF08659_consen 7 GGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGPIDGVI 86 (181)
T ss_dssp TTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-EEEEE
T ss_pred CCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCCcceee
Confidence 468999999999999997 57888999832 1 111 12457899999999999999998643 6899
Q ss_pred EcCC----Cc----------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHH
Q 028525 71 CPSE----GF----------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLM 124 (208)
Q Consensus 71 ~~~~----~~----------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~ 124 (208)
|+++ .. +.++.....++.||+.||+...-.......|...+. +.+..-...+
T Consensus 87 h~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~~gq~~YaaAN~--~lda~a~~~~ 164 (181)
T PF08659_consen 87 HAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGGPGQSAYAAANA--FLDALARQRR 164 (181)
T ss_dssp E-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-TTBHHHHHHHH--HHHHHHHHHH
T ss_pred eeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccCcchHhHHHHHH--HHHHHHHHHH
Confidence 8732 11 122344567889999999875433333444543222 2222223445
Q ss_pred hcCCCEEEEecccc
Q 028525 125 ASGIPYTIIRTGVL 138 (208)
Q Consensus 125 ~~~~~~tivRp~~~ 138 (208)
..+.+++.|.-+..
T Consensus 165 ~~g~~~~sI~wg~W 178 (181)
T PF08659_consen 165 SRGLPAVSINWGAW 178 (181)
T ss_dssp HTTSEEEEEEE-EB
T ss_pred hCCCCEEEEEcccc
Confidence 67899999886654
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.3e-06 Score=65.55 Aligned_cols=168 Identities=15% Similarity=0.102 Sum_probs=105.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc---C-----CceEEEEcCCCCHHHHHHHhcC-------CCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF---G-----TYVESMAGDASNKKFLKTALRG-------VRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~---~-----~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~ 72 (208)
+++-.+|..++.++..+|++|++..|+..+..+.. . ..|.+.-+|+.|-+++..++++ .|.+|+|
T Consensus 40 ggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~d~l~~c 119 (331)
T KOG1210|consen 40 GGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPIDNLFCC 119 (331)
T ss_pred cCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCcceEEEe
Confidence 35778999999999999999999999988743221 1 1256888999998888777754 3889977
Q ss_pred CCC----ch--------------------------hhhhhhcC-CCeEEEeceeeeccCCCCcccccchh--HHHhHHHH
Q 028525 73 SEG----FI--------------------------SNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGN--ARKLAEQD 119 (208)
Q Consensus 73 ~~~----~~--------------------------~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~--~~~~~~~~ 119 (208)
++. .+ ..++++.. ..+|+++||..+.-+..+..+|.+.+ .+.+++..
T Consensus 120 AG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i~GysaYs~sK~alrgLa~~l 199 (331)
T KOG1210|consen 120 AGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGIYGYSAYSPSKFALRGLAEAL 199 (331)
T ss_pred cCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCcccccccccHHHHHHHHHHHH
Confidence 442 10 11122222 33898998876544444455565543 23344444
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCc-----cceeeecCCcCCCcccHHHHHHHHHHHhhCC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGK-----QGFQFEEGCAANGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~ 176 (208)
.+.+...++.++..-|+.+. .|+.. .+...-.-....+.+..+++|.+++.=+.+.
T Consensus 200 ~qE~i~~~v~Vt~~~P~~~~-tpGfE~En~tkP~~t~ii~g~ss~~~~e~~a~~~~~~~~rg 260 (331)
T KOG1210|consen 200 RQELIKYGVHVTLYYPPDTL-TPGFERENKTKPEETKIIEGGSSVIKCEEMAKAIVKGMKRG 260 (331)
T ss_pred HHHHhhcceEEEEEcCCCCC-CCccccccccCchheeeecCCCCCcCHHHHHHHHHhHHhhc
Confidence 45566679999999998864 33321 1111101112355578899999988766543
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-07 Score=68.35 Aligned_cols=141 Identities=13% Similarity=0.073 Sum_probs=94.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---c--CCceEEEEcCCCCHHHHHHHhcC-------CCEEEEc---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---F--GTYVESMAGDASNKKFLKTALRG-------VRSIICP--- 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~--~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~--- 72 (208)
++||++|. +++.|.++||+|++++|++++.... . ...+.++.+|+.|.+++.+++++ .|.+|..
T Consensus 7 GGtG~gg~-la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~lv~~vh~ 85 (177)
T PRK08309 7 GGTGMLKR-VSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDLAVAWIHS 85 (177)
T ss_pred CcCHHHHH-HHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 56887765 9999999999999999987653321 1 23578889999999999888753 4777754
Q ss_pred -CCCchhhhhhhcCCC----eEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCCccc
Q 028525 73 -SEGFISNAGSLKGVQ----HVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQG 147 (208)
Q Consensus 73 -~~~~~~~a~~~~gv~----~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~ 147 (208)
.+..+..++++.|++ +|+++=...+.. +... . ..+.....+|-=|..|++..+
T Consensus 86 ~~~~~~~~~~~~~gv~~~~~~~~h~~gs~~~~------~~~~--~--------~~~~~~~~~~~~i~lgf~~~~------ 143 (177)
T PRK08309 86 SAKDALSVVCRELDGSSETYRLFHVLGSAASD------PRIP--S--------EKIGPARCSYRRVILGFVLED------ 143 (177)
T ss_pred cchhhHHHHHHHHccCCCCceEEEEeCCcCCc------hhhh--h--------hhhhhcCCceEEEEEeEEEeC------
Confidence 455678889999999 999883222211 1111 0 112223455655555554321
Q ss_pred eeeecCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 148 FQFEEGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 148 ~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
....|.+-+.|++.++.+++.+..
T Consensus 144 -------~~~rwlt~~ei~~gv~~~~~~~~~ 167 (177)
T PRK08309 144 -------TYSRWLTHEEISDGVIKAIESDAD 167 (177)
T ss_pred -------CccccCchHHHHHHHHHHHhcCCC
Confidence 124567889999999999976653
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.6e-07 Score=73.13 Aligned_cols=79 Identities=19% Similarity=0.142 Sum_probs=65.9
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhhc---CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----hhh
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKRNAMESF---GTYVESMAGDASNKKFLKTALRGVRSIICPSEGF----ISN 79 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~----~~~ 79 (208)
.+.|+||+.+++.|++++ ++|++.+|+.++..+.. ..+++..+.|..|.+++.+++++.|+||++.+.+ +.+
T Consensus 7 iGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~~~i~k 86 (389)
T COG1748 7 IGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVDLTILK 86 (389)
T ss_pred ECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhhHHHHH
Confidence 478999999999999998 99999999988754432 3479999999999999999999999999985543 455
Q ss_pred hhhhcCC
Q 028525 80 AGSLKGV 86 (208)
Q Consensus 80 a~~~~gv 86 (208)
+|.++|+
T Consensus 87 a~i~~gv 93 (389)
T COG1748 87 ACIKTGV 93 (389)
T ss_pred HHHHhCC
Confidence 6666676
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-05 Score=62.37 Aligned_cols=166 Identities=14% Similarity=0.057 Sum_probs=107.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----hcC-CceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC--
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAME----SFG-TYVESMAGDASNKKFLKTALR-------GVRSIICPSE-- 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~~~-~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~-- 74 (208)
+.+-+|+.++.+++++|.++...+.+.....+ ... ..+....+|++|.+++.+..+ .+|++|++++
T Consensus 46 gg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V~ILVNNAGI~ 125 (300)
T KOG1201|consen 46 GGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDVDILVNNAGIV 125 (300)
T ss_pred CCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCceEEEeccccc
Confidence 46779999999999999998888887654211 111 158889999999888877653 4588886522
Q ss_pred -Cc---------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHH
Q 028525 75 -GF---------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLM 124 (208)
Q Consensus 75 -~~---------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~ 124 (208)
+. +...+.+.+-.++|-++|....-+.....+|+.++.-. ..+.....|+
T Consensus 126 ~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~gl~~YcaSK~a~vGfhesL~~EL~ 205 (300)
T KOG1201|consen 126 TGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGPAGLADYCASKFAAVGFHESLSMELR 205 (300)
T ss_pred cCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCCccchhhhhhHHHHHHHHHHHHHHHH
Confidence 11 12234555666999999887665566677787754211 1222223344
Q ss_pred h---cCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 125 A---SGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 125 ~---~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
. .+++.|.+-|+.+-.+.-.+ .. .-......+..+-+|+-++.++..++.
T Consensus 206 ~~~~~~IktTlv~P~~i~Tgmf~~---~~-~~~~l~P~L~p~~va~~Iv~ai~~n~~ 258 (300)
T KOG1201|consen 206 ALGKDGIKTTLVCPYFINTGMFDG---AT-PFPTLAPLLEPEYVAKRIVEAILTNQA 258 (300)
T ss_pred hcCCCCeeEEEEeeeeccccccCC---CC-CCccccCCCCHHHHHHHHHHHHHcCCc
Confidence 3 46899999999874322111 01 111235567789999999999876653
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.2e-05 Score=59.06 Aligned_cols=181 Identities=14% Similarity=0.067 Sum_probs=107.8
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----hc-----CCceEEEEcCCCCHHHHHHHh--------cCCCEEEE
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAME----SF-----GTYVESMAGDASNKKFLKTAL--------RGVRSIIC 71 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~~-----~~~v~~v~~Dl~d~~~l~~~~--------~~~d~vi~ 71 (208)
++.-||++++++|.+.|.+|++..|+.++..+ +. +..+..+.+|+++.++..+++ ...|++|+
T Consensus 16 ~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~~GkidiLvn 95 (270)
T KOG0725|consen 16 GSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKFFGKIDILVN 95 (270)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 47789999999999999999999999876211 11 235888999999877666554 23699997
Q ss_pred cCC-----Cch---------------------------hhhhhhcCCCeEEEeceeeeccCCCCc-ccccchhH--HHhH
Q 028525 72 PSE-----GFI---------------------------SNAGSLKGVQHVILLSQLSVYRGSGGI-QALMKGNA--RKLA 116 (208)
Q Consensus 72 ~~~-----~~~---------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~-~~~~~~~~--~~~~ 116 (208)
+++ ... ...+++.+-..++++||........+. ..|...+. ..+.
T Consensus 96 nag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~~~~~~Y~~sK~al~~lt 175 (270)
T KOG0725|consen 96 NAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPGSGVAYGVSKAALLQLT 175 (270)
T ss_pred cCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCcccchhHHHHHHHHH
Confidence 622 100 011334455688888888765432222 45554332 1111
Q ss_pred HHHHHHHHhcCCCEEEEeccccccCCCCccc-----eeee-----cCC-cCCCcccHHHHHHHHHHHhhCCC--CCCcEE
Q 028525 117 EQDESMLMASGIPYTIIRTGVLQNTPGGKQG-----FQFE-----EGC-AANGSLSKEDAAFICVEALESIP--QTGLIF 183 (208)
Q Consensus 117 ~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~-----~~~~-----~~~-~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~ 183 (208)
+..-..+...++++..|-||.+......... ..+. ... +.......+|+|..++.++.+.. ..|+.+
T Consensus 176 r~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~p~gr~g~~~eva~~~~fla~~~asyitG~~i 255 (270)
T KOG0725|consen 176 RSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAVPLGRVGTPEEVAEAAAFLASDDASYITGQTI 255 (270)
T ss_pred HHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhccccccccCCccCHHHHHHhHHhhcCcccccccCCEE
Confidence 2222335567999999999988654311000 0000 001 11223345999999888876543 235666
Q ss_pred EEeeCC
Q 028525 184 EVVNGE 189 (208)
Q Consensus 184 ~i~~~~ 189 (208)
.+.+|.
T Consensus 256 ~vdgG~ 261 (270)
T KOG0725|consen 256 IVDGGF 261 (270)
T ss_pred EEeCCE
Confidence 655443
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.5e-06 Score=60.16 Aligned_cols=180 Identities=14% Similarity=0.101 Sum_probs=105.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcC--CceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC--
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFG--TYVESMAGDASNKKFLKTALR-------GVRSIICPSE-- 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~--~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~-- 74 (208)
++--||++++..|.+.|++|.+.+++...+.+ .++ .+-..+.+|..++.++...++ ..+++++|++
T Consensus 22 g~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~psvlVncAGIt 101 (256)
T KOG1200|consen 22 GSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTPSVLVNCAGIT 101 (256)
T ss_pred CCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCCcEEEEcCccc
Confidence 46679999999999999999999988765322 222 256778999999888877654 2488887732
Q ss_pred --Cch--------------------------hhhhhhcCC--CeEEEeceeeeccCCCCcccccchhH--HHhHHHHHHH
Q 028525 75 --GFI--------------------------SNAGSLKGV--QHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDESM 122 (208)
Q Consensus 75 --~~~--------------------------~~a~~~~gv--~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~~ 122 (208)
+.+ ..++...+. -+||.+||+-.--...+...|...+. --+.+.+-+.
T Consensus 102 rD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~GQtnYAAsK~GvIgftktaArE 181 (256)
T KOG1200|consen 102 RDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFGQTNYAASKGGVIGFTKTAARE 181 (256)
T ss_pred cccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccccchhhhhhcCceeeeeHHHHHH
Confidence 210 111111222 28999999754333333444443221 0011123356
Q ss_pred HHhcCCCEEEEeccccccCCCCcccee----eecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQGFQ----FEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~~~~----~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
+...++++..+-||++..+....-+.. +....+....=..+|+|..+..+..+... .+..+.+.+|
T Consensus 182 la~knIrvN~VlPGFI~tpMT~~mp~~v~~ki~~~iPmgr~G~~EevA~~V~fLAS~~ssYiTG~t~evtGG 253 (256)
T KOG1200|consen 182 LARKNIRVNVVLPGFIATPMTEAMPPKVLDKILGMIPMGRLGEAEEVANLVLFLASDASSYITGTTLEVTGG 253 (256)
T ss_pred HhhcCceEeEeccccccChhhhhcCHHHHHHHHccCCccccCCHHHHHHHHHHHhccccccccceeEEEecc
Confidence 777899999999999865332111000 00111111111348999887776643332 3677777744
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-05 Score=58.53 Aligned_cols=65 Identities=11% Similarity=0.073 Sum_probs=46.6
Q ss_pred cccCccHHHHHHHHHhC-CCcEEE-EEcCchhhhh---hc---CCceEEEEcCCCCHHHHHHHhc---------CCCEEE
Q 028525 8 KRKKMNFRMVILSLIVK-RTRIKA-LVKDKRNAME---SF---GTYVESMAGDASNKKFLKTALR---------GVRSII 70 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~-g~~V~~-~~R~~~~~~~---~~---~~~v~~v~~Dl~d~~~l~~~~~---------~~d~vi 70 (208)
+.+-.||.-|+++|++. |-++++ ..|+++++.+ ++ ..++++++.|+++.+++.+.++ |.+.+|
T Consensus 10 GaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg~~GlnlLi 89 (249)
T KOG1611|consen 10 GANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVGSDGLNLLI 89 (249)
T ss_pred ccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcccCCceEEE
Confidence 45778999999999986 555544 5566776321 21 4589999999999998888764 346666
Q ss_pred Ec
Q 028525 71 CP 72 (208)
Q Consensus 71 ~~ 72 (208)
.+
T Consensus 90 nN 91 (249)
T KOG1611|consen 90 NN 91 (249)
T ss_pred ec
Confidence 54
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.1e-06 Score=60.13 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=70.5
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcC--chhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEE
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKD--KRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~--~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~ 71 (208)
++++.||++++++|+++| +.|+++.|+ .+...+ ..+.++.++++|++|++++.++++ ..|++|+
T Consensus 7 Ga~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li~ 86 (167)
T PF00106_consen 7 GASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGPLDILIN 86 (167)
T ss_dssp TTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSSESEEEE
T ss_pred CCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 468999999999999995 678888888 332211 124578999999999998888874 4599997
Q ss_pred cCCC----c----------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccc
Q 028525 72 PSEG----F----------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMK 109 (208)
Q Consensus 72 ~~~~----~----------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~ 109 (208)
+++. . ...++...+-.+||++||.....+......|..
T Consensus 87 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~a 150 (167)
T PF00106_consen 87 NAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGVRGSPGMSAYSA 150 (167)
T ss_dssp ECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGTSSSTTBHHHHH
T ss_pred ccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhccCCCCChhHHH
Confidence 7321 1 011122245669999999887765544445554
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.9e-05 Score=61.51 Aligned_cols=126 Identities=15% Similarity=0.128 Sum_probs=87.1
Q ss_pred cHHHHHHHHHhCCCcEEEEEcCchhhhhh---c-CCceEEEEcCCCCHHHHHHHhc---------CCCEEEEcCC--Cc-
Q 028525 13 NFRMVILSLIVKRTRIKALVKDKRNAMES---F-GTYVESMAGDASNKKFLKTALR---------GVRSIICPSE--GF- 76 (208)
Q Consensus 13 iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~-~~~v~~v~~Dl~d~~~l~~~~~---------~~d~vi~~~~--~~- 76 (208)
.|..++++|.++|+.|.+-+-+++.+..+ . .++...++.|+++++++.++.+ +...+|++++ +.
T Consensus 41 fG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~gLwglVNNAGi~~~~ 120 (322)
T KOG1610|consen 41 FGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGEDGLWGLVNNAGISGFL 120 (322)
T ss_pred HHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcccccceeEEecccccccc
Confidence 79999999999999999999766553322 2 4678899999999999999974 3467776633 11
Q ss_pred ----------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhc
Q 028525 77 ----------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMAS 126 (208)
Q Consensus 77 ----------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~ 126 (208)
+....+ ..-.|+|++||.+...+.....+|..++.-. +.+.....|+..
T Consensus 121 g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr-~arGRvVnvsS~~GR~~~p~~g~Y~~SK~aVeaf~D~lR~EL~~f 199 (322)
T KOG1610|consen 121 GPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLR-RARGRVVNVSSVLGRVALPALGPYCVSKFAVEAFSDSLRRELRPF 199 (322)
T ss_pred CccccccHHHHHHHHhhhhhhHHHHHHHHHHHHH-hccCeEEEecccccCccCcccccchhhHHHHHHHHHHHHHHHHhc
Confidence 001122 2334999999988655445567787754322 222233446668
Q ss_pred CCCEEEEeccccc
Q 028525 127 GIPYTIIRTGVLQ 139 (208)
Q Consensus 127 ~~~~tivRp~~~~ 139 (208)
|+++.+|-||.+-
T Consensus 200 GV~VsiiePG~f~ 212 (322)
T KOG1610|consen 200 GVKVSIIEPGFFK 212 (322)
T ss_pred CcEEEEeccCccc
Confidence 9999999999654
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.7e-05 Score=56.62 Aligned_cols=162 Identities=11% Similarity=0.073 Sum_probs=104.0
Q ss_pred CccHHHHHHHHHhCCCcEEEEEcCchhhhhhc---CCceEEEEcCCCCHHHHHHHhcC---CCEEEEcCC----Cch---
Q 028525 11 KMNFRMVILSLIVKRTRIKALVKDKRNAMESF---GTYVESMAGDASNKKFLKTALRG---VRSIICPSE----GFI--- 77 (208)
Q Consensus 11 G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~~---~d~vi~~~~----~~~--- 77 (208)
-.||+.++..|.+.|.+|+++.|++..+..+. +.-++.+.+|+.+-+.+.+++.. .|.+++.++ ..+
T Consensus 17 aGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidgLVNNAgvA~~~pf~ei 96 (245)
T KOG1207|consen 17 AGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDGLVNNAGVATNHPFGEI 96 (245)
T ss_pred ccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhhhhccchhhhcchHHHH
Confidence 35899999999999999999999998865442 23489999999998888888754 377774421 000
Q ss_pred -------------------hhh-hh---hcCC-CeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHH----hcCCC
Q 028525 78 -------------------SNA-GS---LKGV-QHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLM----ASGIP 129 (208)
Q Consensus 78 -------------------~~a-~~---~~gv-~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~----~~~~~ 129 (208)
.+. ++ ..++ .-+|.+||.+..++......|+..++... ..-+.+. ...++
T Consensus 97 T~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R~~~nHtvYcatKaALD--mlTk~lAlELGp~kIR 174 (245)
T KOG1207|consen 97 TQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIRPLDNHTVYCATKAALD--MLTKCLALELGPQKIR 174 (245)
T ss_pred hHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcccccCCceEEeecHHHHH--HHHHHHHHhhCcceeE
Confidence 000 11 1222 25899999988887777778877543221 1112222 24688
Q ss_pred EEEEeccccccCCCCccceeeecCC---------cCCCcccHHHHHHHHHHHhhCCC
Q 028525 130 YTIIRTGVLQNTPGGKQGFQFEEGC---------AANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 130 ~tivRp~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
+..+.|..++...+..+ |..++ +...+--++.+..++..+|.+..
T Consensus 175 VNsVNPTVVmT~MG~dn---WSDP~K~k~mL~riPl~rFaEV~eVVnA~lfLLSd~s 228 (245)
T KOG1207|consen 175 VNSVNPTVVMTDMGRDN---WSDPDKKKKMLDRIPLKRFAEVDEVVNAVLFLLSDNS 228 (245)
T ss_pred eeccCCeEEEecccccc---cCCchhccchhhhCchhhhhHHHHHHhhheeeeecCc
Confidence 88888988875544322 22111 11333345888888888876654
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.8e-06 Score=63.07 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=67.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC--CceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCCch-----h-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG--TYVESMAGDASNKKFLKTA-LRGVRSIICPSEGFI-----S- 78 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~--~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~~~-----~- 78 (208)
.+-|.+|+.+++.|.+.||+|+++.+++++..+... ....++.+|-+|++.|.++ +.++|+++.+++... .
T Consensus 6 iG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~ 85 (225)
T COG0569 6 IGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVNSVLAL 85 (225)
T ss_pred ECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHH
Confidence 368999999999999999999999999998665333 4689999999999999999 788999998755431 2
Q ss_pred hhhhhcCCCeEEE
Q 028525 79 NAGSLKGVQHVIL 91 (208)
Q Consensus 79 ~a~~~~gv~~~v~ 91 (208)
-+.+..|+++++-
T Consensus 86 la~~~~gv~~via 98 (225)
T COG0569 86 LALKEFGVPRVIA 98 (225)
T ss_pred HHHHhcCCCcEEE
Confidence 2334578887653
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.8e-05 Score=60.86 Aligned_cols=177 Identities=11% Similarity=-0.017 Sum_probs=94.8
Q ss_pred cccCc-----cHHHHHHHHHhCCCcEEEEEcCchhhhhh--------------cCC-----ceEEEEcCC--CCHH----
Q 028525 8 KRKKM-----NFRMVILSLIVKRTRIKALVKDKRNAMES--------------FGT-----YVESMAGDA--SNKK---- 57 (208)
Q Consensus 8 ~~~G~-----iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~--------------~~~-----~v~~v~~Dl--~d~~---- 57 (208)
.+||- ||.++++.|.+.|++|++ .|+..++.+. ... ....+.+|+ .+++
T Consensus 13 lITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 91 (303)
T PLN02730 13 FIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFDTPEDVPE 91 (303)
T ss_pred EEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecCccccCch
Confidence 35666 999999999999999988 6653321000 010 135677787 3222
Q ss_pred --------------HHHHHhc-------CCCEEEEcCC------Cch--------------------------hhhhhhc
Q 028525 58 --------------FLKTALR-------GVRSIICPSE------GFI--------------------------SNAGSLK 84 (208)
Q Consensus 58 --------------~l~~~~~-------~~d~vi~~~~------~~~--------------------------~~a~~~~ 84 (208)
++.++++ .+|++|++++ +.+ ...+.+.
T Consensus 92 ~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~~p~m~~~ 171 (303)
T PLN02730 92 DVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHFGPIMNPG 171 (303)
T ss_pred hhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 4454442 4699998732 110 0112222
Q ss_pred CCCeEEEeceeeeccCCCCcc-cccchhHHH--hHHHHHHHHHh-cCCCEEEEeccccccCCCCccce---e---eecCC
Q 028525 85 GVQHVILLSQLSVYRGSGGIQ-ALMKGNARK--LAEQDESMLMA-SGIPYTIIRTGVLQNTPGGKQGF---Q---FEEGC 154 (208)
Q Consensus 85 gv~~~v~~Ss~~~~~~~~~~~-~~~~~~~~~--~~~~~e~~l~~-~~~~~tivRp~~~~~~~~~~~~~---~---~~~~~ 154 (208)
.++|++||..........+ .|..+++-. +.+..-..+.. .++++..|.||++.......... . .....
T Consensus 172 --G~II~isS~a~~~~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 249 (303)
T PLN02730 172 --GASISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLGSRAAKAIGFIDDMIEYSYANA 249 (303)
T ss_pred --CEEEEEechhhcCCCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCccCchhhcccccHHHHHHHHhcC
Confidence 5899999876554322122 354433211 11111122323 58999999999885432211000 0 00000
Q ss_pred cCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEee
Q 028525 155 AANGSLSKEDAAFICVEALESIP--QTGLIFEVVN 187 (208)
Q Consensus 155 ~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~ 187 (208)
........+|+|.+++.++..+. ..++.+.+.+
T Consensus 250 pl~r~~~peevA~~~~fLaS~~a~~itG~~l~vdG 284 (303)
T PLN02730 250 PLQKELTADEVGNAAAFLASPLASAITGATIYVDN 284 (303)
T ss_pred CCCCCcCHHHHHHHHHHHhCccccCccCCEEEECC
Confidence 11233467999999999987543 2466666543
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=5e-06 Score=61.72 Aligned_cols=125 Identities=19% Similarity=0.249 Sum_probs=76.2
Q ss_pred hhhhhhcC--CCeEEEeceeeeccCCCCc--------c--cccchhHHHhHHHHHHHHH-hcCCCEEEEeccccccCCCC
Q 028525 78 SNAGSLKG--VQHVILLSQLSVYRGSGGI--------Q--ALMKGNARKLAEQDESMLM-ASGIPYTIIRTGVLQNTPGG 144 (208)
Q Consensus 78 ~~a~~~~g--v~~~v~~Ss~~~~~~~~~~--------~--~~~~~~~~~~~~~~e~~l~-~~~~~~tivRp~~~~~~~~~ 144 (208)
.++...+. .+.+|.+|..+.|.++... . .|+...+..|. +..+. ..+.+.++||.|.+.+..+.
T Consensus 112 a~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~~~~qgfd~~srL~l~WE---~aA~~~~~~~r~~~iR~GvVlG~gGG 188 (315)
T KOG3019|consen 112 ADAINNAPQEARPTVLVSGVAVYVPSESQEYSEKIVHQGFDILSRLCLEWE---GAALKANKDVRVALIRIGVVLGKGGG 188 (315)
T ss_pred HHHHhcCCCCCCCeEEEEeeEEeccccccccccccccCChHHHHHHHHHHH---HHhhccCcceeEEEEEEeEEEecCCc
Confidence 34444443 3578999998888643211 1 11111111221 11222 35689999999998865432
Q ss_pred cc-----cee------eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 145 KQ-----GFQ------FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 145 ~~-----~~~------~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
.- ++. ++.+-+...|||++|++..|..+|+++.-.| ++|-.... .+..|+.+.+.++++++
T Consensus 189 a~~~M~lpF~~g~GGPlGsG~Q~fpWIHv~DL~~li~~ale~~~v~G-ViNgvAP~~~~n~Ef~q~lg~aL~Rp 261 (315)
T KOG3019|consen 189 ALAMMILPFQMGAGGPLGSGQQWFPWIHVDDLVNLIYEALENPSVKG-VINGVAPNPVRNGEFCQQLGSALSRP 261 (315)
T ss_pred chhhhhhhhhhccCCcCCCCCeeeeeeehHHHHHHHHHHHhcCCCCc-eecccCCCccchHHHHHHHHHHhCCC
Confidence 21 112 2233344678999999999999999876544 55544344 47789999999988765
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.5e-06 Score=60.28 Aligned_cols=130 Identities=11% Similarity=-0.102 Sum_probs=85.5
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc-CCceEEEEcCCCCHHHHHHHhcC--------CCEEEEcCCC----c
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNAMESF-GTYVESMAGDASNKKFLKTALRG--------VRSIICPSEG----F 76 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~--------~d~vi~~~~~----~ 76 (208)
.|.||-+|++++.+.|+.|.+..|+.+...++. ..++.+...|+++++++.+.... .|.+++.++. .
T Consensus 17 ~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L~NNAG~~C~~P 96 (289)
T KOG1209|consen 17 SGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLLYNNAGQSCTFP 96 (289)
T ss_pred CcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEEEcCCCCCcccc
Confidence 899999999999999999999999988754433 34789999999999998877532 3777754221 0
Q ss_pred h----h------------------hh-----hhhcCCCeEEEeceeeeccCCCCcccccchhHHHhH--HHHHHHHHhcC
Q 028525 77 I----S------------------NA-----GSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLA--EQDESMLMASG 127 (208)
Q Consensus 77 ~----~------------------~a-----~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~--~~~e~~l~~~~ 127 (208)
. . .+ .+..| .||++.|+.++-+......|..+++...+ +...-.|+-.|
T Consensus 97 a~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKG--tIVnvgSl~~~vpfpf~~iYsAsKAAihay~~tLrlEl~PFg 174 (289)
T KOG1209|consen 97 ALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKG--TIVNVGSLAGVVPFPFGSIYSASKAAIHAYARTLRLELKPFG 174 (289)
T ss_pred cccCCHHHHHhhhccceeeeehHHHHHHHHHHHccc--eEEEecceeEEeccchhhhhhHHHHHHHHhhhhcEEeeeccc
Confidence 0 0 01 12223 79999998877654444455554432111 11111133468
Q ss_pred CCEEEEeccccccC
Q 028525 128 IPYTIIRTGVLQNT 141 (208)
Q Consensus 128 ~~~tivRp~~~~~~ 141 (208)
++++.+-||.+...
T Consensus 175 v~Vin~itGGv~T~ 188 (289)
T KOG1209|consen 175 VRVINAITGGVATD 188 (289)
T ss_pred cEEEEecccceecc
Confidence 88888889887643
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4e-05 Score=60.83 Aligned_cols=169 Identities=12% Similarity=0.024 Sum_probs=96.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh-------h-hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM-------E-SFGTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~-------~-~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+.|..||.+.++.|..+|.+|+..+|+..+.. . .....+.+++.|+.|..++.+..+ ..|++|++
T Consensus 42 GansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~~~~ldvLInN 121 (314)
T KOG1208|consen 42 GATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKKEGPLDVLINN 121 (314)
T ss_pred CCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhcCCCccEEEeC
Confidence 35889999999999999999999999975421 1 123467889999999999888763 34888865
Q ss_pred CC-----------Cc-----------------hhhhhhhcCCCeEEEeceeeecc--C---CCCccc--ccchhHHHhHH
Q 028525 73 SE-----------GF-----------------ISNAGSLKGVQHVILLSQLSVYR--G---SGGIQA--LMKGNARKLAE 117 (208)
Q Consensus 73 ~~-----------~~-----------------~~~a~~~~gv~~~v~~Ss~~~~~--~---~~~~~~--~~~~~~~~~~~ 117 (208)
++ |. +.+.++...-.|||++||..... . ..+... |....++...+
T Consensus 122 AGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~~~~~~~~~l~~~~~~~~~~~~~Y~~SK 201 (314)
T KOG1208|consen 122 AGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILGGGKIDLKDLSGEKAKLYSSDAAYALSK 201 (314)
T ss_pred cccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccccCccchhhccchhccCccchhHHHHhH
Confidence 22 11 12334545447999999876411 0 011111 21111111110
Q ss_pred -----HHHHHHHh--cCCCEEEEeccccccCCCCccceeeecCC--cC-CC-cccHHHHHHHHHHHhhCCC
Q 028525 118 -----QDESMLMA--SGIPYTIIRTGVLQNTPGGKQGFQFEEGC--AA-NG-SLSKEDAAFICVEALESIP 177 (208)
Q Consensus 118 -----~~e~~l~~--~~~~~tivRp~~~~~~~~~~~~~~~~~~~--~~-~~-~v~~~Dva~~~~~~l~~~~ 177 (208)
.+.++.+. .++....+.||.+....-... ..+.... .. .. .-+.+.-|+.++.+..+|+
T Consensus 202 la~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l~r~-~~~~~~l~~~l~~~~~ks~~~ga~t~~~~a~~p~ 271 (314)
T KOG1208|consen 202 LANVLLANELAKRLKKGVTTYSVHPGVVKTTGLSRV-NLLLRLLAKKLSWPLTKSPEQGAATTCYAALSPE 271 (314)
T ss_pred HHHHHHHHHHHHHhhcCceEEEECCCcccccceecc-hHHHHHHHHHHHHHhccCHHHHhhheehhccCcc
Confidence 12222332 289999999998865422110 0000000 00 11 1245677777777777774
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.2e-05 Score=56.04 Aligned_cols=190 Identities=11% Similarity=0.023 Sum_probs=117.8
Q ss_pred ccCccHHHHHHHHHhC-CCcEEEEE--cCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEc------CCC--
Q 028525 9 RKKMNFRMVILSLIVK-RTRIKALV--KDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICP------SEG-- 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~-g~~V~~~~--R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~------~~~-- 75 (208)
.-|++|..++..|..+ |.+-.+++ +.++..-. ..-.++..|+.|...+.+.+- ..|.+|+. .+.
T Consensus 52 ~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V~---~~GPyIy~DILD~K~L~eIVVn~RIdWL~HfSALLSAvGE~N 128 (366)
T KOG2774|consen 52 SLGQLGRGLASLLRYMYGSECVILSDIVKPPANVT---DVGPYIYLDILDQKSLEEIVVNKRIDWLVHFSALLSAVGETN 128 (366)
T ss_pred chHHHhHHHHHHHHHHhCCccEehhhccCCchhhc---ccCCchhhhhhccccHHHhhcccccceeeeHHHHHHHhcccC
Confidence 4678888999877665 65555553 23332211 123577889999999988885 46888864 111
Q ss_pred -------------chhhhhhhcCCCeEEEeceeeeccCCCCccc------------ccchhHHHhHHHHHHHHH-hcCCC
Q 028525 76 -------------FISNAGSLKGVQHVILLSQLSVYRGSGGIQA------------LMKGNARKLAEQDESMLM-ASGIP 129 (208)
Q Consensus 76 -------------~~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~------------~~~~~~~~~~~~~e~~l~-~~~~~ 129 (208)
++.+.+++.+.+-| ..|+++++++..|.+| |.. .|..++...++.. ..|++
T Consensus 129 VpLA~~VNI~GvHNil~vAa~~kL~iF-VPSTIGAFGPtSPRNPTPdltIQRPRTIYGV--SKVHAEL~GEy~~hrFg~d 205 (366)
T KOG2774|consen 129 VPLALQVNIRGVHNILQVAAKHKLKVF-VPSTIGAFGPTSPRNPTPDLTIQRPRTIYGV--SKVHAELLGEYFNHRFGVD 205 (366)
T ss_pred CceeeeecchhhhHHHHHHHHcCeeEe-ecccccccCCCCCCCCCCCeeeecCceeech--hHHHHHHHHHHHHhhcCcc
Confidence 13455667777544 4688888875544332 332 2333444334443 57999
Q ss_pred EEEEeccccccC--CCCcc-c---------------eeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 130 YTIIRTGVLQNT--PGGKQ-G---------------FQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 130 ~tivRp~~~~~~--~~~~~-~---------------~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
+..+|...++.. ++.+. . .-+-.++..-..++.+|+-++++.++..+. ...++||+.+-.
T Consensus 206 fr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~tCylrpdtrlpmmy~~dc~~~~~~~~~a~~~~lkrr~ynvt~~s 285 (366)
T KOG2774|consen 206 FRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHTCYLRPDTRLPMMYDTDCMASVIQLLAADSQSLKRRTYNVTGFS 285 (366)
T ss_pred ceecccCcccccCCCCCCcchhHHHHHHHHHHcCCcccccCCCccCceeehHHHHHHHHHHHhCCHHHhhhheeeeceec
Confidence 999995554432 22221 0 001123334455677999999998887664 357899999777
Q ss_pred cchhhHHHHHHHHhh
Q 028525 190 EKVSDWKKCFSRLME 204 (208)
Q Consensus 190 ~~~~e~~~~~~~~~~ 204 (208)
-+.+|+++.+.+++.
T Consensus 286 ftpee~~~~~~~~~p 300 (366)
T KOG2774|consen 286 FTPEEIADAIRRVMP 300 (366)
T ss_pred cCHHHHHHHHHhhCC
Confidence 788999998888753
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.2e-05 Score=56.98 Aligned_cols=179 Identities=16% Similarity=0.122 Sum_probs=111.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh------hhhhc-CCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN------AMESF-GTYVESMAGDASNKKFLKTALRG-------VRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~------~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~ 73 (208)
++-|-||.+++++|+++|..+.++..+.++ +.+.+ ...+-+++.|+++..++.++++. .|++|+.+
T Consensus 12 ggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINgA 91 (261)
T KOG4169|consen 12 GGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFGTIDILINGA 91 (261)
T ss_pred cCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhCceEEEEccc
Confidence 357889999999999999888888766554 22222 23688999999999998888753 48888652
Q ss_pred C---Cc-------------------hhhhhh-hcC-C-CeEEEeceeeeccCCCCcccccchhH------HHhHHHHHHH
Q 028525 74 E---GF-------------------ISNAGS-LKG-V-QHVILLSQLSVYRGSGGIQALMKGNA------RKLAEQDESM 122 (208)
Q Consensus 74 ~---~~-------------------~~~a~~-~~g-v-~~~v~~Ss~~~~~~~~~~~~~~~~~~------~~~~~~~e~~ 122 (208)
+ .+ ....+. +.| - .-+|.+||.....+......|..+++ +.+ +-+.+
T Consensus 92 Gi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~p~~pVY~AsKaGVvgFTRSl--a~~ay 169 (261)
T KOG4169|consen 92 GILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVFPVYAASKAGVVGFTRSL--ADLAY 169 (261)
T ss_pred ccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCccccchhhhhcccceeeeehhh--hhhhh
Confidence 2 11 012232 232 2 36788898865544333333443221 111 23567
Q ss_pred HHhcCCCEEEEeccccccCCC----CccceeeecCC------cCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCc
Q 028525 123 LMASGIPYTIIRTGVLQNTPG----GKQGFQFEEGC------AANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEE 190 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~----~~~~~~~~~~~------~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~ 190 (208)
+..+|+++..+.||....... ....+ +...+ ...+.++..+++..++.+++.+. .+..|-+..+..
T Consensus 170 y~~sGV~~~avCPG~t~t~l~~~~~~~~~~-~e~~~~~~~~l~~~~~q~~~~~a~~~v~aiE~~~-NGaiw~v~~g~l 245 (261)
T KOG4169|consen 170 YQRSGVRFNAVCPGFTRTDLAENIDASGGY-LEYSDSIKEALERAPKQSPACCAINIVNAIEYPK-NGAIWKVDSGSL 245 (261)
T ss_pred HhhcCEEEEEECCCcchHHHHHHHHhcCCc-ccccHHHHHHHHHcccCCHHHHHHHHHHHHhhcc-CCcEEEEecCcE
Confidence 788999999999998643211 11111 11111 12445677999999999998743 467777776653
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.4e-05 Score=58.14 Aligned_cols=135 Identities=7% Similarity=-0.026 Sum_probs=83.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------cCCceEEEEcCCCCHHH----HHHHhcCCC--EEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------FGTYVESMAGDASNKKF----LKTALRGVR--SIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~~~~v~~v~~Dl~d~~~----l~~~~~~~d--~vi~~~~ 74 (208)
+.|..||++.+++|.++|++|..++|+++|+... ....+.++..|+++++. +.+.+.+.| ++|++.+
T Consensus 56 GaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~VgILVNNvG 135 (312)
T KOG1014|consen 56 GATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVGILVNNVG 135 (312)
T ss_pred CCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceEEEEeccc
Confidence 4599999999999999999999999999984221 12357888999987665 556666665 4555521
Q ss_pred ------Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHH
Q 028525 75 ------GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDE 120 (208)
Q Consensus 75 ------~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e 120 (208)
..+ ..-|...+-.-++.+||...-.+..-...|..++. ..+.....
T Consensus 136 ~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~p~~s~ysasK~~v~~~S~~L~ 215 (312)
T KOG1014|consen 136 MSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIPTPLLSVYSASKAFVDFFSRCLQ 215 (312)
T ss_pred ccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccccChhHHHHHHHHHHHHHHHHHHH
Confidence 110 01133344446889988765443322223333222 11122223
Q ss_pred HHHHhcCCCEEEEeccccccCC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTP 142 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~ 142 (208)
...+..|+.+-.+-|..+....
T Consensus 216 ~Ey~~~gI~Vq~v~p~~VaTkm 237 (312)
T KOG1014|consen 216 KEYESKGIFVQSVIPYLVATKM 237 (312)
T ss_pred HHHHhcCeEEEEeehhheeccc
Confidence 3445578888888888876544
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.8e-05 Score=64.88 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=59.1
Q ss_pred cccCccHHHHHHHHHhCC-C-cEEEEEcCchhhhhh----cCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----h
Q 028525 8 KRKKMNFRMVILSLIVKR-T-RIKALVKDKRNAMES----FGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF----I 77 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~-~V~~~~R~~~~~~~~----~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~----~ 77 (208)
+. |.+|+.+++.|++++ + +|++.+|+.+++.+. ...++++++.|..|.+++.++++++|+||+|++.. +
T Consensus 5 G~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~~~~v 83 (386)
T PF03435_consen 5 GA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFFGEPV 83 (386)
T ss_dssp ---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGGHHHH
T ss_pred cC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccchhHHH
Confidence 34 999999999999886 5 899999999885444 34589999999999999999999999999885533 3
Q ss_pred hhhhhhcCC
Q 028525 78 SNAGSLKGV 86 (208)
Q Consensus 78 ~~a~~~~gv 86 (208)
..+|.+.|+
T Consensus 84 ~~~~i~~g~ 92 (386)
T PF03435_consen 84 ARACIEAGV 92 (386)
T ss_dssp HHHHHHHT-
T ss_pred HHHHHHhCC
Confidence 455555665
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.3e-05 Score=52.15 Aligned_cols=67 Identities=16% Similarity=0.140 Sum_probs=54.7
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTA-LRGVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~ 75 (208)
+.|.+|..+++.|.+.+++|+++.+++.........++.++.+|.+|++.+.++ ++.++.+|.+++.
T Consensus 5 G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 5 GYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDD 72 (116)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSS
T ss_pred cCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCC
Confidence 568999999999999777999999999886665556799999999999999887 4678999877543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.5e-05 Score=60.58 Aligned_cols=62 Identities=3% Similarity=0.014 Sum_probs=45.4
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCC--HHHHHHHhcCCCEEEEc
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASN--KKFLKTALRGVRSIICP 72 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d--~~~l~~~~~~~d~vi~~ 72 (208)
||++|++|+++|+++||+|+++.|+..... ....+++++..+..+ .+.+.+.+.++|+||++
T Consensus 25 SG~iG~aLA~~L~~~G~~V~li~r~~~~~~-~~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~ 88 (229)
T PRK06732 25 TGQLGKIIAETFLAAGHEVTLVTTKTAVKP-EPHPNLSIIEIENVDDLLETLEPLVKDHDVLIHS 88 (229)
T ss_pred chHHHHHHHHHHHhCCCEEEEEECcccccC-CCCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeC
Confidence 999999999999999999999998653221 112356776654332 35666677789999987
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00014 Score=55.78 Aligned_cols=131 Identities=12% Similarity=0.142 Sum_probs=80.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-----hhhhcC----CceEEEEcCCCC-HHHHHHHhc-------CCCEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-----AMESFG----TYVESMAGDASN-KKFLKTALR-------GVRSII 70 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-----~~~~~~----~~v~~v~~Dl~d-~~~l~~~~~-------~~d~vi 70 (208)
++++.||+++++.|+++|++|++..|+... ...... ..+.....|+++ .+++..+++ +.|++|
T Consensus 12 Gas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~~~~g~id~lv 91 (251)
T COG1028 12 GASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAEEEFGRIDILV 91 (251)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 468889999999999999999988887543 222222 356777899998 887776653 368777
Q ss_pred EcCC-----Cchhh-------------------h--hhhcCCC--eEEEeceeeeccCCCCc-ccccchhHHH--hHHHH
Q 028525 71 CPSE-----GFISN-------------------A--GSLKGVQ--HVILLSQLSVYRGSGGI-QALMKGNARK--LAEQD 119 (208)
Q Consensus 71 ~~~~-----~~~~~-------------------a--~~~~gv~--~~v~~Ss~~~~~~~~~~-~~~~~~~~~~--~~~~~ 119 (208)
++++ ....+ . +...-.+ +||++||.... ...+. ..|..+++-. +.+..
T Consensus 92 nnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~~~~~~Y~~sK~al~~~~~~l 170 (251)
T COG1028 92 NNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGPPGQAAYAASKAALIGLTKAL 170 (251)
T ss_pred ECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCCCCcchHHHHHHHHHHHHHHH
Confidence 6622 11100 0 0000111 89999998766 44332 5565543211 11212
Q ss_pred HHHHHhcCCCEEEEeccccc
Q 028525 120 ESMLMASGIPYTIIRTGVLQ 139 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~ 139 (208)
...+...++.++.|.||.+.
T Consensus 171 ~~e~~~~gi~v~~v~PG~~~ 190 (251)
T COG1028 171 ALELAPRGIRVNAVAPGYID 190 (251)
T ss_pred HHHHhhhCcEEEEEEeccCC
Confidence 23344578999999999553
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.9e-05 Score=59.93 Aligned_cols=63 Identities=16% Similarity=0.111 Sum_probs=45.2
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc--CCceEEEEcCCCCHHHHHHHhc--CCCEEEEc
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNAMESF--GTYVESMAGDASNKKFLKTALR--GVRSIICP 72 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~ 72 (208)
||++|++|+++|+++|++|+.+++..+...... ...+..+.++.+..+.+.+++. ++|+|||+
T Consensus 28 SGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~~~~~~~~~V~s~~d~~~~l~~~~~~~~~D~VIH~ 94 (229)
T PRK09620 28 KGTIGRIIAEELISKGAHVIYLHGYFAEKPNDINNQLELHPFEGIIDLQDKMKSIITHEKVDAVIMA 94 (229)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcccCCceeEEEEecHHHHHHHHHHHhcccCCCEEEEC
Confidence 799999999999999999999987543211111 1234456665555567888884 68999987
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.3e-05 Score=57.21 Aligned_cols=64 Identities=13% Similarity=0.035 Sum_probs=52.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc---C--CceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF---G--TYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~---~--~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
++|.+|+.+++.|++.|++|+++.|+.++..... . .+.++...|..|.+++.+++.++|+||++
T Consensus 36 gtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~a 104 (194)
T cd01078 36 GTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence 5899999999999999999999999987643221 1 13556677889999999999999999988
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00021 Score=52.51 Aligned_cols=132 Identities=6% Similarity=-0.006 Sum_probs=85.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc--CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-----
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF--GTYVESMAGDASNKKFLKTALR-------GVRSIICPSE----- 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----- 74 (208)
+...||.+|++++++.|.+|++..|+.+++.+.. .+.+....+|+.|.+++.+.++ ..+++|++++
T Consensus 13 G~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvliNNAGIqr~~ 92 (245)
T COG3967 13 GASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVLINNAGIQRNE 92 (245)
T ss_pred CcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchheeeecccccchh
Confidence 4557999999999999999999999998865433 3467888899999887666553 3589996632
Q ss_pred ---Cc--h----------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHHHHHh
Q 028525 75 ---GF--I----------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDESMLMA 125 (208)
Q Consensus 75 ---~~--~----------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~~l~~ 125 (208)
+. . .....++.-.-+|.+||--+.-+......|+..++ +.+.....+-++.
T Consensus 93 dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm~~~PvYcaTKAaiHsyt~aLR~Qlk~ 172 (245)
T COG3967 93 DLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPMASTPVYCATKAAIHSYTLALREQLKD 172 (245)
T ss_pred hccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCcccccccchhhHHHHHHHHHHHHHHhhh
Confidence 10 0 01122333346888888766654444445655442 2222122333455
Q ss_pred cCCCEEEEecccccc
Q 028525 126 SGIPYTIIRTGVLQN 140 (208)
Q Consensus 126 ~~~~~tivRp~~~~~ 140 (208)
.++++.-+-|+.+..
T Consensus 173 t~veVIE~~PP~V~t 187 (245)
T COG3967 173 TSVEVIELAPPLVDT 187 (245)
T ss_pred cceEEEEecCCceec
Confidence 678888888888754
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00041 Score=68.43 Aligned_cols=131 Identities=13% Similarity=0.077 Sum_probs=82.9
Q ss_pred cccCccHHHHHHHHHhC-CCcEEEEEcCch-----------------------------------------------h--
Q 028525 8 KRKKMNFRMVILSLIVK-RTRIKALVKDKR-----------------------------------------------N-- 37 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~-g~~V~~~~R~~~-----------------------------------------------~-- 37 (208)
++++.||.+++++|+++ |.+|+++.|+.. .
T Consensus 2004 GGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~~~~~~ei~ 2083 (2582)
T TIGR02813 2004 GGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRPVLSSLEIA 2083 (2582)
T ss_pred CCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccccchhHHHH
Confidence 35788999999999998 699999999820 0
Q ss_pred --hh--hhcCCceEEEEcCCCCHHHHHHHhc------CCCEEEEcCC----Cc----------------------hhhhh
Q 028525 38 --AM--ESFGTYVESMAGDASNKKFLKTALR------GVRSIICPSE----GF----------------------ISNAG 81 (208)
Q Consensus 38 --~~--~~~~~~v~~v~~Dl~d~~~l~~~~~------~~d~vi~~~~----~~----------------------~~~a~ 81 (208)
.. ...+..+.++.+|++|.+++.+++. +.|.|||+++ .. +..++
T Consensus 2084 ~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G~~~Ll~al 2163 (2582)
T TIGR02813 2084 QALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDGLLSLLAAL 2163 (2582)
T ss_pred HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0123457889999999999888874 4699998733 11 11233
Q ss_pred hhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHH--hcCCCEEEEecccccc
Q 028525 82 SLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLM--ASGIPYTIIRTGVLQN 140 (208)
Q Consensus 82 ~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~--~~~~~~tivRp~~~~~ 140 (208)
.....++||++||+.......+...|...+....+ .+ ..++ ..+++++.|.||.+-.
T Consensus 2164 ~~~~~~~IV~~SSvag~~G~~gqs~YaaAkaaL~~-la-~~la~~~~~irV~sI~wG~wdt 2222 (2582)
T TIGR02813 2164 NAENIKLLALFSSAAGFYGNTGQSDYAMSNDILNK-AA-LQLKALNPSAKVMSFNWGPWDG 2222 (2582)
T ss_pred HHhCCCeEEEEechhhcCCCCCcHHHHHHHHHHHH-HH-HHHHHHcCCcEEEEEECCeecC
Confidence 33456789999998754333334445543221111 11 1222 2368899999988643
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0026 Score=50.42 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=51.5
Q ss_pred CeEEEeceeeeccCCCCcc-cccchhHHH--hHHHHHHHHHh-cCCCEEEEeccccccCCCCcc----ce-e-eecCCcC
Q 028525 87 QHVILLSQLSVYRGSGGIQ-ALMKGNARK--LAEQDESMLMA-SGIPYTIIRTGVLQNTPGGKQ----GF-Q-FEEGCAA 156 (208)
Q Consensus 87 ~~~v~~Ss~~~~~~~~~~~-~~~~~~~~~--~~~~~e~~l~~-~~~~~tivRp~~~~~~~~~~~----~~-~-~~~~~~~ 156 (208)
.++|.+||+.......... .|...++-. +.+.....+.. .|+++..|.||.+........ .. . +......
T Consensus 171 G~ii~iss~~~~~~~p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~p~ 250 (299)
T PRK06300 171 GSTISLTYLASMRAVPGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASRAGKAIGFIERMVDYYQDWAPL 250 (299)
T ss_pred CeEEEEeehhhcCcCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccChhhhcccccHHHHHHHHhcCCC
Confidence 3788888876543222122 354433211 11111122323 489999999998754321110 00 0 0000111
Q ss_pred CCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 157 NGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 157 ~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
......+|+|..++.++..+. ..++.+.+.++
T Consensus 251 ~r~~~peevA~~v~~L~s~~~~~itG~~i~vdGG 284 (299)
T PRK06300 251 PEPMEAEQVGAAAAFLVSPLASAITGETLYVDHG 284 (299)
T ss_pred CCCcCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 234467999999998886543 34666666533
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00014 Score=57.95 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=60.5
Q ss_pred cCccHHHHHHHHHhCC--CcEEEEEcCchh--hhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC-----Cc----
Q 028525 10 KKMNFRMVILSLIVKR--TRIKALVKDKRN--AMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE-----GF---- 76 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~--~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~-----~~---- 76 (208)
.|.||+.++..|..++ +++..++++..+ ..++..........+.+|+.++.++++++|+||++.+ +.
T Consensus 17 aG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~~~~~~~tR~d 96 (321)
T PTZ00325 17 AGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGVPRKPGMTRDD 96 (321)
T ss_pred CCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCCCCCCCCCHHH
Confidence 4999999999988655 789999884322 1121111113345567776666789999999998722 11
Q ss_pred -----------hhhhhhhcCCCeEEEeceeeec
Q 028525 77 -----------ISNAGSLKGVQHVILLSQLSVY 98 (208)
Q Consensus 77 -----------~~~a~~~~gv~~~v~~Ss~~~~ 98 (208)
+.+++++.+++++|+++|-.+.
T Consensus 97 ll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvd 129 (321)
T PTZ00325 97 LFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVN 129 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH
Confidence 2345778899999999987653
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00024 Score=54.79 Aligned_cols=86 Identities=13% Similarity=0.028 Sum_probs=62.0
Q ss_pred hhccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCCC-------
Q 028525 5 KKMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSEG------- 75 (208)
Q Consensus 5 ~~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~------- 75 (208)
...++||. |+.|++.|.++||+|++.+|+..........+...+..+..|.+++.+.++ ++|+||.++..
T Consensus 4 LvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~ 82 (256)
T TIGR00715 4 LLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFAAQITT 82 (256)
T ss_pred EEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHH
Confidence 34568999 999999999999999999999866433333334455566778888888885 47999988332
Q ss_pred chhhhhhhcCCCeEEE
Q 028525 76 FISNAGSLKGVQHVIL 91 (208)
Q Consensus 76 ~~~~a~~~~gv~~~v~ 91 (208)
....+|++.|++.+-|
T Consensus 83 ~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 83 NATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHHhCCcEEEE
Confidence 2456677778775544
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00031 Score=58.78 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=56.7
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC-CceEEEEcCCCCHHHHHHH-hcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG-TYVESMAGDASNKKFLKTA-LRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~ 74 (208)
+.|.+|+++++.|.++|++|++++|++++...... .+++++.+|.++.+.+.++ +.++|.||.+++
T Consensus 7 G~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~ 74 (453)
T PRK09496 7 GAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTD 74 (453)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecC
Confidence 56999999999999999999999999887654433 4689999999999999988 888999998743
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00062 Score=49.26 Aligned_cols=66 Identities=11% Similarity=0.004 Sum_probs=50.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhh----hh--cCCceEEEEcCCCCHHHHHHHh-------cCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAM----ES--FGTYVESMAGDASNKKFLKTAL-------RGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~----~~--~~~~v~~v~~Dl~d~~~l~~~~-------~~~d~vi~~~~ 74 (208)
+++.||+++++.|+++|++|.+..|+.+... +. .+..+.++..|++|.+++.+++ .+.|++|++++
T Consensus 24 a~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~iDilVnnAG 102 (169)
T PRK06720 24 GGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRIDMLFQNAG 102 (169)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4778999999999999999999998865431 11 1334677899999998887755 24788887643
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0004 Score=59.75 Aligned_cols=66 Identities=11% Similarity=0.067 Sum_probs=56.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHh-cCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTAL-RGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~-~~~d~vi~~~~ 74 (208)
+-|.+|+++++.|.++|++|+++++++++..+....+..++.+|.+|++.+.++= +.+|+++.+.+
T Consensus 424 G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 424 GYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred CCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 5899999999999999999999999988866555567999999999999988763 57898887733
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00078 Score=46.47 Aligned_cols=79 Identities=11% Similarity=0.046 Sum_probs=61.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc-CCC----chhhhhhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP-SEG----FISNAGSL 83 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~~~----~~~~a~~~ 83 (208)
+.| -|.+++..|.+.|++|++++.++..........++++..|+.+++ .+.-+++|.|+.+ .+. .+.+.+++
T Consensus 24 G~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~--~~~y~~a~liysirpp~el~~~~~~la~~ 100 (134)
T PRK04148 24 GIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPN--LEIYKNAKLIYSIRPPRDLQPFILELAKK 100 (134)
T ss_pred Eec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCC--HHHHhcCCEEEEeCCCHHHHHHHHHHHHH
Confidence 588 888999999999999999999988754433446899999999877 4677899999987 332 24567777
Q ss_pred cCCCeEE
Q 028525 84 KGVQHVI 90 (208)
Q Consensus 84 ~gv~~~v 90 (208)
.++.-+|
T Consensus 101 ~~~~~~i 107 (134)
T PRK04148 101 INVPLII 107 (134)
T ss_pred cCCCEEE
Confidence 7876444
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0011 Score=55.57 Aligned_cols=85 Identities=16% Similarity=0.098 Sum_probs=63.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc--CCceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCCc-----hhhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF--GTYVESMAGDASNKKFLKTA-LRGVRSIICPSEGF-----ISNA 80 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~~-----~~~a 80 (208)
+.|.+|+.+++.|.+.|++|+++++++++..... ..++.++.+|.+|++.+.++ ++++|+||.+++.. ....
T Consensus 238 G~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~ 317 (453)
T PRK09496 238 GGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDEANILSSLL 317 (453)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHH
Confidence 5899999999999999999999999988754332 23688999999999988655 46789998774432 2233
Q ss_pred hhhcCCCeEEEec
Q 028525 81 GSLKGVQHVILLS 93 (208)
Q Consensus 81 ~~~~gv~~~v~~S 93 (208)
++..+.++++...
T Consensus 318 ~~~~~~~~ii~~~ 330 (453)
T PRK09496 318 AKRLGAKKVIALV 330 (453)
T ss_pred HHHhCCCeEEEEE
Confidence 4566777665543
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0008 Score=53.44 Aligned_cols=66 Identities=11% Similarity=0.159 Sum_probs=54.5
Q ss_pred cccCccHHHHHHHHHh----CCCcEEEEEcCchhhhhh-----------cCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIV----KRTRIKALVKDKRNAMES-----------FGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~----~g~~V~~~~R~~~~~~~~-----------~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.+|+.|.++++++++ .+...-+..|++.++.+. +...+ ++.+|..|++++.+..+.+-+|++|
T Consensus 12 GASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~-i~i~D~~n~~Sl~emak~~~vivN~ 90 (423)
T KOG2733|consen 12 GASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSV-ILIADSANEASLDEMAKQARVIVNC 90 (423)
T ss_pred ccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccce-EEEecCCCHHHHHHHHhhhEEEEec
Confidence 4699999999999998 678888999999875332 12334 8889999999999999999999988
Q ss_pred CC
Q 028525 73 SE 74 (208)
Q Consensus 73 ~~ 74 (208)
.+
T Consensus 91 vG 92 (423)
T KOG2733|consen 91 VG 92 (423)
T ss_pred cc
Confidence 43
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00011 Score=52.82 Aligned_cols=59 Identities=8% Similarity=-0.107 Sum_probs=43.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|..|+.+++.|+++||+|++++|++++..++...+++.. .++ .++++++|+||.+.
T Consensus 7 IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~----~s~---~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 7 IGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVA----DSP---AEAAEQADVVILCV 65 (163)
T ss_dssp E--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEE----SSH---HHHHHHBSEEEE-S
T ss_pred EchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhh----hhh---hhHhhcccceEeec
Confidence 479999999999999999999999999988765554444433 133 45666789999873
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0013 Score=57.16 Aligned_cols=67 Identities=16% Similarity=0.103 Sum_probs=57.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTA-LRGVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~ 75 (208)
+-|++|+.+++.|.++|++++++++++++.......+..++.||.+|++.+.++ ++++|++|.+.+.
T Consensus 407 G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d 474 (601)
T PRK03659 407 GFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNE 474 (601)
T ss_pred cCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCC
Confidence 589999999999999999999999999886655556789999999999998877 5678999987443
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.001 Score=53.57 Aligned_cols=82 Identities=16% Similarity=0.056 Sum_probs=51.2
Q ss_pred ccccCccHHHHHHHHHhCCCc---EEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----hhh
Q 028525 7 MKRKKMNFRMVILSLIVKRTR---IKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF----ISN 79 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~---V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~----~~~ 79 (208)
.+.||++|++|++.|.+++|. +++++|+.+.-....-.+.++...|+++. .+.++|+||+|++.. ...
T Consensus 7 vGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~-----~~~~vDvVf~A~g~g~s~~~~~ 81 (334)
T PRK14874 7 VGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTF-----DFSGVDIALFSAGGSVSKKYAP 81 (334)
T ss_pred ECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHH-----HHcCCCEEEECCChHHHHHHHH
Confidence 467999999999999998775 48888765432221111245555566542 346899999985533 222
Q ss_pred hhhhcCCCeEEEece
Q 028525 80 AGSLKGVQHVILLSQ 94 (208)
Q Consensus 80 a~~~~gv~~~v~~Ss 94 (208)
....+|+ ++|-.|+
T Consensus 82 ~~~~~G~-~VIDlS~ 95 (334)
T PRK14874 82 KAAAAGA-VVIDNSS 95 (334)
T ss_pred HHHhCCC-EEEECCc
Confidence 3334565 4555565
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00046 Score=56.33 Aligned_cols=89 Identities=17% Similarity=0.088 Sum_probs=53.8
Q ss_pred ccccCccHHHHHHHHHhC-CCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCC-c---hhhh
Q 028525 7 MKRKKMNFRMVILSLIVK-RTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTA-LRGVRSIICPSEG-F---ISNA 80 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~-g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~-~---~~~a 80 (208)
.+.||++|++|++.|.++ .++|+.+.++.+.-............+|+.+.+++... ++++|+||+|.+. . +...
T Consensus 44 vGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~s~~i~~~ 123 (381)
T PLN02968 44 LGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGTTQEIIKA 123 (381)
T ss_pred ECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHHHHHHHHH
Confidence 357999999999999988 68999999865432111111112223444433333322 6889999998443 2 2333
Q ss_pred hhhcCCCeEEEeceeee
Q 028525 81 GSLKGVQHVILLSQLSV 97 (208)
Q Consensus 81 ~~~~gv~~~v~~Ss~~~ 97 (208)
+ ..| .++|-+|+..-
T Consensus 124 ~-~~g-~~VIDlSs~fR 138 (381)
T PLN02968 124 L-PKD-LKIVDLSADFR 138 (381)
T ss_pred H-hCC-CEEEEcCchhc
Confidence 3 344 47888887643
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00037 Score=51.56 Aligned_cols=59 Identities=8% Similarity=-0.081 Sum_probs=42.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh----hhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA----MESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~----~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+++|.||+.|+++|.+.||+|++..|+.++. .+.+... + ...+...+.+.+|+||++.|
T Consensus 7 ~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~--i------~~~~~~dA~~~aDVVvLAVP 69 (211)
T COG2085 7 IGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPL--I------TGGSNEDAAALADVVVLAVP 69 (211)
T ss_pred eccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccc--c------ccCChHHHHhcCCEEEEecc
Confidence 5799999999999999999999997765542 1122222 1 12334568889999999854
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0016 Score=56.79 Aligned_cols=66 Identities=15% Similarity=0.075 Sum_probs=56.1
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHH-hcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTA-LRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~ 74 (208)
+-|++|+.+++.|.++|++++++++++++.......+..++.||.+|++.+.++ ++.++.+|.+.+
T Consensus 407 G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 407 GFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred ecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 589999999999999999999999999886655556789999999999988765 457899998744
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00078 Score=53.58 Aligned_cols=30 Identities=7% Similarity=-0.061 Sum_probs=27.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN 37 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~ 37 (208)
.+.|.+|..++..|+++||+|++++|+++.
T Consensus 8 IG~G~mG~~iA~~la~~G~~V~v~d~~~~~ 37 (308)
T PRK06129 8 IGAGLIGRAWAIVFARAGHEVRLWDADPAA 37 (308)
T ss_pred ECccHHHHHHHHHHHHCCCeeEEEeCCHHH
Confidence 479999999999999999999999999764
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.028 Score=44.58 Aligned_cols=114 Identities=8% Similarity=-0.071 Sum_probs=68.6
Q ss_pred CccHHHHHHHHHhCCCcEEEEEcCchhhh-----hhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc-CCCchh-hh---
Q 028525 11 KMNFRMVILSLIVKRTRIKALVKDKRNAM-----ESFGTYVESMAGDASNKKFLKTALRGVRSIICP-SEGFIS-NA--- 80 (208)
Q Consensus 11 G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~-----~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~~~~~~-~a--- 80 (208)
=+-|+.+++.|+++||+|++++|++++.. .+...++... ++..++.+++|+||.+ ..+... +.
T Consensus 29 p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~A-------aS~aEAAa~ADVVIL~LPd~aaV~eVl~G 101 (341)
T TIGR01724 29 PYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVV-------SDDKEAAKHGEIHVLFTPFGKGTFSIART 101 (341)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeec-------CCHHHHHhCCCEEEEecCCHHHHHHHHHH
Confidence 35699999999999999999998876432 1222344432 2345788899999987 333322 22
Q ss_pred -hhhcCC-CeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHH--hcCCCEEEEeccccccCCCCcc
Q 028525 81 -GSLKGV-QHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLM--ASGIPYTIIRTGVLQNTPGGKQ 146 (208)
Q Consensus 81 -~~~~gv-~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~--~~~~~~tivRp~~~~~~~~~~~ 146 (208)
+....- +-+|-+||++... .+. ..|..|| ..++.++...|+.+-+.+...+
T Consensus 102 Laa~L~~GaIVID~STIsP~t------------~~~---~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~ 156 (341)
T TIGR01724 102 IIEHVPENAVICNTCTVSPVV------------LYY---SLEKILRLKRTDVGISSMHPAAVPGTPQHGH 156 (341)
T ss_pred HHhcCCCCCEEEECCCCCHHH------------HHH---HHHHHhhcCccccCeeccCCCCCCCCCCCce
Confidence 121122 2344455544111 111 1245555 4689999999999876665543
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0012 Score=52.88 Aligned_cols=69 Identities=10% Similarity=0.015 Sum_probs=45.8
Q ss_pred hhhhc--cccCccHHHHHHHHHhCC-------CcEEEEEcCchhhhhhcCCceE------EEEcCCCCHHHHHHHhcCCC
Q 028525 3 PMKKM--KRKKMNFRMVILSLIVKR-------TRIKALVKDKRNAMESFGTYVE------SMAGDASNKKFLKTALRGVR 67 (208)
Q Consensus 3 ~~~~~--~~~G~iG~~l~~~Ll~~g-------~~V~~~~R~~~~~~~~~~~~v~------~v~~Dl~d~~~l~~~~~~~d 67 (208)
|+|.- +.+|++|++++..|+.++ ++|++++|++.... ..+..++ ....|+....++.++++++|
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~-~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aD 80 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKA-LEGVVMELQDCAFPLLKSVVATTDPEEAFKDVD 80 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccc-ccceeeehhhccccccCCceecCCHHHHhCCCC
Confidence 56553 357999999999998744 58999999653210 0111111 22335544567778999999
Q ss_pred EEEEc
Q 028525 68 SIICP 72 (208)
Q Consensus 68 ~vi~~ 72 (208)
+||++
T Consensus 81 iVI~t 85 (325)
T cd01336 81 VAILV 85 (325)
T ss_pred EEEEe
Confidence 99987
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00043 Score=44.98 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=44.7
Q ss_pred cccCccHHHHHHHHHhCC---CcEEEE-EcCchhhhhhcC-CceEEEEcCCCCHHHHHHHhcCCCEEEEc-CCCchhhh
Q 028525 8 KRKKMNFRMVILSLIVKR---TRIKAL-VKDKRNAMESFG-TYVESMAGDASNKKFLKTALRGVRSIICP-SEGFISNA 80 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g---~~V~~~-~R~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~~~~~~~a 80 (208)
.+.|.+|++|++.|++.| ++|... .|++++..+... -++.+...| ..++++.+|+||+| .+..+.+.
T Consensus 5 IG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~advvilav~p~~~~~v 77 (96)
T PF03807_consen 5 IGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADD------NEEAAQEADVVILAVKPQQLPEV 77 (96)
T ss_dssp ESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEE------HHHHHHHTSEEEE-S-GGGHHHH
T ss_pred ECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCC------hHHhhccCCEEEEEECHHHHHHH
Confidence 478999999999999999 999966 899887644321 123333222 23466689999988 44444333
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0034 Score=49.51 Aligned_cols=64 Identities=8% Similarity=0.023 Sum_probs=49.9
Q ss_pred ccCccHHHHHHHHHhCCCc-EEEEEcCc---hhhhhh---c---CCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTR-IKALVKDK---RNAMES---F---GTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~-V~~~~R~~---~~~~~~---~---~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|++++..|.+.|.+ |+++.|+. ++..+. + ...+.+...|++|.+++.+.+..+|++|++
T Consensus 133 GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 133 GAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNA 206 (289)
T ss_pred CCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEe
Confidence 5799999999999999986 99999986 443221 1 123456678998888888888889999988
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0041 Score=49.74 Aligned_cols=89 Identities=12% Similarity=0.072 Sum_probs=58.3
Q ss_pred cCccHHHHHHHHHhCC--CcEEEEEcCchh--hhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC-----Cc----
Q 028525 10 KKMNFRMVILSLIVKR--TRIKALVKDKRN--AMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE-----GF---- 76 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~--~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~-----~~---- 76 (208)
+|.||+.++..|..++ .++..+++++.. ..++..........++.+.+++.++++++|+||++++ +.
T Consensus 27 aG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~~~~g~~R~d 106 (323)
T PLN00106 27 AGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDD 106 (323)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCCCCCCCCHHH
Confidence 5999999999998766 589999987622 1121111112233454455567789999999997722 11
Q ss_pred -----------hhhhhhhcCCCeEEEeceeeec
Q 028525 77 -----------ISNAGSLKGVQHVILLSQLSVY 98 (208)
Q Consensus 77 -----------~~~a~~~~gv~~~v~~Ss~~~~ 98 (208)
+.+.+.+.+.+.+++++|-.+.
T Consensus 107 ll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD 139 (323)
T PLN00106 107 LFNINAGIVKTLCEAVAKHCPNALVNIISNPVN 139 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 2344667788889888876554
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0014 Score=54.26 Aligned_cols=41 Identities=2% Similarity=-0.168 Sum_probs=34.2
Q ss_pred Cchhhhc-cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh
Q 028525 1 MGPMKKM-KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES 41 (208)
Q Consensus 1 ~~~~~~~-~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~ 41 (208)
|++|+.- .+.|.+|..++..|.++||+|++++|++++...+
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l 42 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTI 42 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 6765442 4799999999999999999999999998876543
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0067 Score=55.45 Aligned_cols=67 Identities=15% Similarity=0.040 Sum_probs=52.9
Q ss_pred ccCccHHHHHHHHHhCC-Cc-------------EEEEEcCchhhhhhcC--CceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR-TR-------------IKALVKDKRNAMESFG--TYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~-------------V~~~~R~~~~~~~~~~--~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|++|+.+++.|.+.. ++ |.+.+++.+++..... .+++.+..|+.|.+++.++++++|+||++
T Consensus 576 GAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~~DaVIsa 655 (1042)
T PLN02819 576 GAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQVDVVISL 655 (1042)
T ss_pred CCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcCCCEEEEC
Confidence 69999999999998753 34 7777877766443321 36788999999999999999999999998
Q ss_pred CCC
Q 028525 73 SEG 75 (208)
Q Consensus 73 ~~~ 75 (208)
.|.
T Consensus 656 lP~ 658 (1042)
T PLN02819 656 LPA 658 (1042)
T ss_pred CCc
Confidence 553
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.014 Score=47.12 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=58.1
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCc---------------------hhh------hhhcCC--ceEEEEcCCCCHHH
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDK---------------------RNA------MESFGT--YVESMAGDASNKKF 58 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~---------------------~~~------~~~~~~--~v~~v~~Dl~d~~~ 58 (208)
+-|.+|+++++.|...|. ++++++++. .|+ .....+ .++.+..|++ .+.
T Consensus 31 G~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~-~~~ 109 (338)
T PRK12475 31 GAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDVT-VEE 109 (338)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEeccCC-HHH
Confidence 589999999999999996 788888763 111 001122 4566667775 467
Q ss_pred HHHHhcCCCEEEEcCCCc-----hhhhhhhcCCCeEEEecee
Q 028525 59 LKTALRGVRSIICPSEGF-----ISNAGSLKGVQHVILLSQL 95 (208)
Q Consensus 59 l~~~~~~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~Ss~ 95 (208)
+.+.++++|+||.+++.. +.+.+.+.+++ +|+.+..
T Consensus 110 ~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip-~i~~~~~ 150 (338)
T PRK12475 110 LEELVKEVDLIIDATDNFDTRLLINDLSQKYNIP-WIYGGCV 150 (338)
T ss_pred HHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 788899999999886543 34566777775 5565543
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0046 Score=49.86 Aligned_cols=82 Identities=13% Similarity=0.064 Sum_probs=49.9
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEE---EcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----hhh
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKAL---VKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF----ISN 79 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~---~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~----~~~ 79 (208)
.+.||++|+.|++.|.+++|.+..+ .+..+.-....-.+.+.+..|++ ...+.++|+||.|++.. ...
T Consensus 5 vGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~D~v~~a~g~~~s~~~a~ 79 (339)
T TIGR01296 5 VGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAK-----IESFEGIDIALFSAGGSVSKEFAP 79 (339)
T ss_pred EcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCC-----hHHhcCCCEEEECCCHHHHHHHHH
Confidence 4679999999999998888875543 35543322111123566666764 23457899999885533 222
Q ss_pred hhhhcCCCeEEEece
Q 028525 80 AGSLKGVQHVILLSQ 94 (208)
Q Consensus 80 a~~~~gv~~~v~~Ss 94 (208)
.+...|+ ++|=.|+
T Consensus 80 ~~~~~G~-~VID~ss 93 (339)
T TIGR01296 80 KAAKCGA-IVIDNTS 93 (339)
T ss_pred HHHHCCC-EEEECCH
Confidence 3334566 4554554
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0026 Score=48.35 Aligned_cols=57 Identities=5% Similarity=-0.007 Sum_probs=40.9
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHh-------cCCCEEEEc
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTAL-------RGVRSIICP 72 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~-------~~~d~vi~~ 72 (208)
+|.+|++++++|+++|++|+++.|... ... . ....+|+.+.+++.+++ .++|++|++
T Consensus 24 SGgIG~AIA~~la~~Ga~Vvlv~~~~~-l~~---~--~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnn 87 (227)
T TIGR02114 24 TGHLGKIITETFLSAGHEVTLVTTKRA-LKP---E--PHPNLSIREIETTKDLLITLKELVQEHDILIHS 87 (227)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEcChhh-ccc---c--cCCcceeecHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 899999999999999999999876321 111 0 11346777776666553 357999987
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0035 Score=49.51 Aligned_cols=65 Identities=9% Similarity=-0.064 Sum_probs=52.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.||+.|..++++|..+|.+.....|+..++.. .++ -+.-..++-++..+.+.+.+.++|++|.+
T Consensus 13 GAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG--~~~~~~p~~~p~~~~~~~~~~~VVlncvG 80 (382)
T COG3268 13 GATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLG--PEAAVFPLGVPAALEAMASRTQVVLNCVG 80 (382)
T ss_pred ccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcC--ccccccCCCCHHHHHHHHhcceEEEeccc
Confidence 359999999999999999999888899888543 233 34445566669999999999999998833
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0078 Score=47.99 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=53.5
Q ss_pred cccCccHHHHHHHHHh---CCCcEEEEEcCchhh---hhhcC-CceEEEEcCCCCHHHHHHHhcCCCEEEEcCC-----C
Q 028525 8 KRKKMNFRMVILSLIV---KRTRIKALVKDKRNA---MESFG-TYVESMAGDASNKKFLKTALRGVRSIICPSE-----G 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~---~g~~V~~~~R~~~~~---~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~-----~ 75 (208)
+.+|.+|++++..|.. .++++.+++|++... .+... .....+.+ .+.+++.++++++|+||++.+ +
T Consensus 7 GAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~--~~~~d~~~~l~~~DiVIitaG~~~~~~ 84 (312)
T PRK05086 7 GAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKG--FSGEDPTPALEGADVVLISAGVARKPG 84 (312)
T ss_pred CCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEE--eCCCCHHHHcCCCCEEEEcCCCCCCCC
Confidence 4579999999988854 247888888875321 11111 11123333 223445677899999998832 1
Q ss_pred c---------------hhhhhhhcCCCeEEEeceee
Q 028525 76 F---------------ISNAGSLKGVQHVILLSQLS 96 (208)
Q Consensus 76 ~---------------~~~a~~~~gv~~~v~~Ss~~ 96 (208)
. +..++++.+.+++|.+.|=.
T Consensus 85 ~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 85 MDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 1 23456677888888877643
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0042 Score=49.20 Aligned_cols=61 Identities=10% Similarity=-0.045 Sum_probs=46.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|.+|..+++.|++.||+|.+++|++++.......+... ..+.+++.+.+..+|+||++
T Consensus 6 IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~ 66 (298)
T TIGR00872 6 IGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTG----VANLRELSQRLSAPRVVWVM 66 (298)
T ss_pred EcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEE
Confidence 46899999999999999999999999988765443322222 24566666667788999977
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0045 Score=48.73 Aligned_cols=59 Identities=8% Similarity=-0.069 Sum_probs=43.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|.+|..+++.|++.||+|++++|++++.......++.. .++..++++++|+||.+.
T Consensus 2 IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 2 IGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQA-------AASPAEAAEGADRVITML 60 (288)
T ss_pred CcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCee-------cCCHHHHHhcCCEEEEeC
Confidence 36899999999999999999999999988755443333321 113346778899999873
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.025 Score=40.69 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=52.3
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchh---hhhhcCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcC
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRN---AMESFGTYVESMAGDASNKKFLKTALRG-------VRSIICPS 73 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~---~~~~~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~ 73 (208)
-..+|++-+++|.++|..|..++-..++ ..+.++.++-+...|.+.++++..++.. .|+.++|+
T Consensus 18 asglg~ataerlakqgasv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld~~vnca 91 (260)
T KOG1199|consen 18 ASGLGKATAERLAKQGASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLDALVNCA 91 (260)
T ss_pred cccccHHHHHHHHhcCceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhccceeeeeecc
Confidence 3457999999999999999999988776 3344567889999999999999988842 48888773
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0068 Score=44.48 Aligned_cols=60 Identities=8% Similarity=-0.039 Sum_probs=38.4
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCC--HHHHHHHhcCCCEEEEc
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASN--KKFLKTALRGVRSIICP 72 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d--~~~l~~~~~~~d~vi~~ 72 (208)
||..|.+|+++++.+|++|+.+..+. ... .+.+++.+..+-.+ .+.+.+.+..+|++|++
T Consensus 28 SG~~G~~lA~~~~~~Ga~V~li~g~~-~~~--~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~a 89 (185)
T PF04127_consen 28 SGKMGAALAEEAARRGAEVTLIHGPS-SLP--PPPGVKVIRVESAEEMLEAVKELLPSADIIIMA 89 (185)
T ss_dssp -SHHHHHHHHHHHHTT-EEEEEE-TT-S------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-
T ss_pred cCHHHHHHHHHHHHCCCEEEEEecCc-ccc--ccccceEEEecchhhhhhhhccccCcceeEEEe
Confidence 99999999999999999999999874 222 13467777644322 33444445678999977
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0025 Score=44.31 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=44.0
Q ss_pred cccCccHHHHHHHHHhCCCc-EEEEEcCchhhhhh---c-CCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTR-IKALVKDKRNAMES---F-GTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~-V~~~~R~~~~~~~~---~-~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|..|+.++..|.+.|.+ |+++.|+.+++.++ + ...++++ ++.+ +.+.+..+|+||++
T Consensus 18 iGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~--~~~~---~~~~~~~~DivI~a 82 (135)
T PF01488_consen 18 IGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAI--PLED---LEEALQEADIVINA 82 (135)
T ss_dssp ESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEE--EGGG---HCHHHHTESEEEE-
T ss_pred ECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcccccee--eHHH---HHHHHhhCCeEEEe
Confidence 36999999999999999976 99999998875433 2 1234444 4433 44678889999988
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0093 Score=46.95 Aligned_cols=62 Identities=5% Similarity=-0.078 Sum_probs=46.1
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~ 75 (208)
+.|.+|+.+++.|...|.+|+++.|++++.......+...+ +.+++.+.+.++|+||++.+.
T Consensus 158 G~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~-----~~~~l~~~l~~aDiVint~P~ 219 (287)
T TIGR02853 158 GFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPF-----PLNKLEEKVAEIDIVINTIPA 219 (287)
T ss_pred cChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeee-----cHHHHHHHhccCCEEEECCCh
Confidence 68999999999999999999999999876433222233322 245567788899999988543
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.011 Score=48.52 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=51.1
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHH-hcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTA-LRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~ 74 (208)
+.|.+|+.++++|.++|+++.+++.+.. .+....+..++.||.+|++.+.++ ++.+++|+.+.+
T Consensus 247 G~g~lg~~v~~~L~~~g~~vvVId~d~~--~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~ 311 (393)
T PRK10537 247 GHSPLAINTYLGLRQRGQAVTVIVPLGL--EHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRD 311 (393)
T ss_pred CCChHHHHHHHHHHHCCCCEEEEECchh--hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCC
Confidence 5899999999999999999999986532 223345688999999999998877 467899987643
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0045 Score=48.80 Aligned_cols=59 Identities=7% Similarity=-0.081 Sum_probs=43.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|.+|+.+++.|++.||+|++++|++++.......+... .++..++++++|+||.+.
T Consensus 5 IG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~v 63 (291)
T TIGR01505 5 IGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVT-------AETARQVTEQADVIFTMV 63 (291)
T ss_pred EEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcc-------cCCHHHHHhcCCEEEEec
Confidence 46899999999999999999999999987754433222211 123456778899999773
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.062 Score=41.19 Aligned_cols=64 Identities=13% Similarity=-0.032 Sum_probs=47.1
Q ss_pred ccCccHHHHHHHHHhCC-----CcEEEEEcCchhhh-------hhcC---CceEEEEcCCCCHHHHHHHhc-------CC
Q 028525 9 RKKMNFRMVILSLIVKR-----TRIKALVKDKRNAM-------ESFG---TYVESMAGDASNKKFLKTALR-------GV 66 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-----~~V~~~~R~~~~~~-------~~~~---~~v~~v~~Dl~d~~~l~~~~~-------~~ 66 (208)
.+..+|.++|.+|++.. .++...+|+.+++. +..+ .+++++.+|+++..++.+|.+ ..
T Consensus 11 anSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~di~~rf~~l 90 (341)
T KOG1478|consen 11 ANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKDIKQRFQRL 90 (341)
T ss_pred CCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHHHHHHhhhc
Confidence 46679999999999864 34666789887732 2223 368999999999877777653 45
Q ss_pred CEEEEc
Q 028525 67 RSIICP 72 (208)
Q Consensus 67 d~vi~~ 72 (208)
|.++..
T Consensus 91 d~iylN 96 (341)
T KOG1478|consen 91 DYIYLN 96 (341)
T ss_pred cEEEEc
Confidence 999955
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.041 Score=44.44 Aligned_cols=87 Identities=18% Similarity=0.223 Sum_probs=59.1
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCc---------------------hhh------hhhcCC--ceEEEEcCCCCHHH
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDK---------------------RNA------MESFGT--YVESMAGDASNKKF 58 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~---------------------~~~------~~~~~~--~v~~v~~Dl~d~~~ 58 (208)
+-|.+|++++..|...|. ++++++++. .|. .....+ .++.+..+++ .+.
T Consensus 31 G~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~-~~~ 109 (339)
T PRK07688 31 GAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQDVT-AEE 109 (339)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEeccCC-HHH
Confidence 589999999999999996 899888752 110 011122 3556666765 466
Q ss_pred HHHHhcCCCEEEEcCCCc-----hhhhhhhcCCCeEEEeceeee
Q 028525 59 LKTALRGVRSIICPSEGF-----ISNAGSLKGVQHVILLSQLSV 97 (208)
Q Consensus 59 l~~~~~~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~Ss~~~ 97 (208)
+.+.++++|+||.+.+.. +.+++.+.+++ +|+.++.+.
T Consensus 110 ~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP-~i~~~~~g~ 152 (339)
T PRK07688 110 LEELVTGVDLIIDATDNFETRFIVNDAAQKYGIP-WIYGACVGS 152 (339)
T ss_pred HHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCC-EEEEeeeee
Confidence 777899999999885543 34566777764 667665443
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.021 Score=43.20 Aligned_cols=90 Identities=13% Similarity=0.032 Sum_probs=57.7
Q ss_pred hhccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------------------cCCceEEE---EcCCCC--HHHHHH
Q 028525 5 KKMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------------------FGTYVESM---AGDASN--KKFLKT 61 (208)
Q Consensus 5 ~~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------------------~~~~v~~v---~~Dl~d--~~~l~~ 61 (208)
..|.+-|+.|.+++++|+++||+|+++++++....+. ..+++-|+ .+|++| .+++..
T Consensus 3 iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~la~ 82 (300)
T COG1023 3 IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLAP 82 (300)
T ss_pred ceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHHHh
Confidence 3577899999999999999999999999987642211 12344443 355555 445555
Q ss_pred HhcCCCEEEEcCCCch------hhhhhhcCCCeEEEecee
Q 028525 62 ALRGVRSIICPSEGFI------SNAGSLKGVQHVILLSQL 95 (208)
Q Consensus 62 ~~~~~d~vi~~~~~~~------~~a~~~~gv~~~v~~Ss~ 95 (208)
.+..-|+||-....+. ...++..|+ +|+-+.+.
T Consensus 83 ~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi-~flD~GTS 121 (300)
T COG1023 83 LLSAGDIVIDGGNSNYKDSLRRAKLLAEKGI-HFLDVGTS 121 (300)
T ss_pred hcCCCCEEEECCccchHHHHHHHHHHHhcCC-eEEeccCC
Confidence 5566688886533332 233555676 56666544
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.015 Score=47.51 Aligned_cols=64 Identities=8% Similarity=-0.103 Sum_probs=48.8
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.+++.|...|.+|++++|++++........-..+..+..+.+.+.+.+.++|+||.+
T Consensus 174 GaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 174 GGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence 6899999999999999999999999877643321111122334566788899999999999977
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0077 Score=47.66 Aligned_cols=58 Identities=7% Similarity=-0.073 Sum_probs=42.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|.+|..+++.|++.||+|++++|++++..+....++. ...+..++++++|+||.+
T Consensus 7 IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~-------~~~s~~~~~~~aDvVi~~ 64 (296)
T PRK15461 7 IGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGAT-------PAASPAQAAAGAEFVITM 64 (296)
T ss_pred EeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCc-------ccCCHHHHHhcCCEEEEe
Confidence 4799999999999999999999999998875543322222 112234567788888877
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.018 Score=47.47 Aligned_cols=58 Identities=5% Similarity=-0.146 Sum_probs=45.2
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc----CCCEEEEc
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR----GVRSIICP 72 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~----~~d~vi~~ 72 (208)
+|.+|.+++++|.++|++|+++.++.+ .. ...+ +...|+++.+++.+++. .+|++|++
T Consensus 213 SG~~G~aiA~~l~~~Ga~V~~v~~~~~-~~--~~~~--~~~~dv~~~~~~~~~v~~~~~~~DilI~~ 274 (399)
T PRK05579 213 SGKMGYALARAAARRGADVTLVSGPVN-LP--TPAG--VKRIDVESAQEMLDAVLAALPQADIFIMA 274 (399)
T ss_pred cchHHHHHHHHHHHCCCEEEEeCCCcc-cc--CCCC--cEEEccCCHHHHHHHHHHhcCCCCEEEEc
Confidence 788999999999999999999998763 11 1222 34568999888887774 57999987
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.015 Score=46.10 Aligned_cols=61 Identities=8% Similarity=-0.109 Sum_probs=42.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|.+|+.+++.|++.||+|.+++|++++.......++.+ ..+++++.+.+.++|+||.+
T Consensus 6 IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~ 66 (301)
T PRK09599 6 IGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATG----ADSLEELVAKLPAPRVVWLM 66 (301)
T ss_pred EcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCee----cCCHHHHHhhcCCCCEEEEE
Confidence 46899999999999999999999999987755433333332 12444444444446777766
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0099 Score=40.80 Aligned_cols=82 Identities=13% Similarity=0.097 Sum_probs=43.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEE-cCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc-CCCchhhhhh---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALV-KDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP-SEGFISNAGS--- 82 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~-R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~~~~~~~a~~--- 82 (208)
.+.|++|.+|.+.|.+.||.|..+. |+..+...... .+. .....+ +.+.+..+|.+|++ .+..+...++
T Consensus 16 IGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~-~~~--~~~~~~---~~~~~~~aDlv~iavpDdaI~~va~~La 89 (127)
T PF10727_consen 16 IGAGRVGTALARALARAGHEVVGVYSRSPASAERAAA-FIG--AGAILD---LEEILRDADLVFIAVPDDAIAEVAEQLA 89 (127)
T ss_dssp ECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC---T--T--------TTGGGCC-SEEEE-S-CCHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccc-ccc--cccccc---cccccccCCEEEEEechHHHHHHHHHHH
Confidence 3699999999999999999998874 55533222111 000 011111 23467789999988 4444443322
Q ss_pred hc----CCCeEEEecee
Q 028525 83 LK----GVQHVILLSQL 95 (208)
Q Consensus 83 ~~----gv~~~v~~Ss~ 95 (208)
.. .-+-++++|..
T Consensus 90 ~~~~~~~g~iVvHtSGa 106 (127)
T PF10727_consen 90 QYGAWRPGQIVVHTSGA 106 (127)
T ss_dssp CC--S-TT-EEEES-SS
T ss_pred HhccCCCCcEEEECCCC
Confidence 22 12456777743
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0071 Score=48.29 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=43.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCc--eEEE-----EcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTY--VESM-----AGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~--v~~v-----~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..|.+.||+|++++|+++........+ .... .....-..+..++++++|+||.+.+
T Consensus 7 iG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (325)
T PRK00094 7 LGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVP 80 (325)
T ss_pred ECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCC
Confidence 47999999999999999999999999876643322111 0000 0011112234456778999998844
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.019 Score=46.44 Aligned_cols=84 Identities=13% Similarity=-0.016 Sum_probs=48.6
Q ss_pred cccCccHHHHHHHHHhC-CCcEEEEEcCchh---hhhhcCCceEEE-EcCCCCHHHHHHHhcCCCEEEEcCCCc----hh
Q 028525 8 KRKKMNFRMVILSLIVK-RTRIKALVKDKRN---AMESFGTYVESM-AGDASNKKFLKTALRGVRSIICPSEGF----IS 78 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~-g~~V~~~~R~~~~---~~~~~~~~v~~v-~~Dl~d~~~l~~~~~~~d~vi~~~~~~----~~ 78 (208)
+.||.+|+.+++.|.+. ++++.++.++.+. ..+..+ .+..+ ..++++.+.. .+.++|+||+|.+.. ..
T Consensus 9 GAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~-~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP~~~~~~~v 85 (343)
T PRK00436 9 GASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHP-HLRGLVDLVLEPLDPE--ILAGADVVFLALPHGVSMDLA 85 (343)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCc-ccccccCceeecCCHH--HhcCCCEEEECCCcHHHHHHH
Confidence 45999999999999876 6888887764332 111111 12111 2234343332 457899999985432 22
Q ss_pred hhhhhcCCCeEEEecee
Q 028525 79 NAGSLKGVQHVILLSQL 95 (208)
Q Consensus 79 ~a~~~~gv~~~v~~Ss~ 95 (208)
..+.++|+ ++|-.|+.
T Consensus 86 ~~a~~aG~-~VID~S~~ 101 (343)
T PRK00436 86 PQLLEAGV-KVIDLSAD 101 (343)
T ss_pred HHHHhCCC-EEEECCcc
Confidence 33444553 66666654
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.025 Score=44.78 Aligned_cols=62 Identities=5% Similarity=-0.089 Sum_probs=46.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~ 75 (208)
+.|.+|+.++..|...|.+|++++|++++.......+.+++ +.+++.+.+.++|+||.+.+.
T Consensus 159 G~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~-----~~~~l~~~l~~aDiVI~t~p~ 220 (296)
T PRK08306 159 GFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPF-----HLSELAEEVGKIDIIFNTIPA 220 (296)
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeee-----cHHHHHHHhCCCCEEEECCCh
Confidence 68999999999999999999999999776433222234433 235567788899999988543
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.017 Score=46.36 Aligned_cols=64 Identities=11% Similarity=0.042 Sum_probs=51.4
Q ss_pred hccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEE
Q 028525 6 KMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIIC 71 (208)
Q Consensus 6 ~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~ 71 (208)
.+.+.|++|+-++.+...-|++|++++-+++........ .++..+++|++.+.+..+.||+|=+
T Consensus 5 gIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~--~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 5 GILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVAD--RVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred EEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhccc--ceeecCCCCHHHHHHHHhhCCEEEE
Confidence 456899999999999999999999998665542222222 5677889999999999999999864
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.014 Score=45.59 Aligned_cols=57 Identities=9% Similarity=-0.055 Sum_probs=40.0
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|..|++.+..|++.||+|++++|+.++..++...+.++.. .|.+ ..+.+|+||.+
T Consensus 42 GLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~----sPae---Vae~sDvvitm 98 (327)
T KOG0409|consen 42 GLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVAN----SPAE---VAEDSDVVITM 98 (327)
T ss_pred eeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhC----CHHH---HHhhcCEEEEE
Confidence 588889999999999999999999999886655433333221 2333 33446666654
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.012 Score=46.43 Aligned_cols=60 Identities=10% Similarity=-0.015 Sum_probs=43.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.+++.|++.|++|.+++|++++.......++.. .++..++++++|+||.+.+
T Consensus 8 iG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~-------~~~~~e~~~~~d~vi~~vp 67 (296)
T PRK11559 8 IGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAET-------ASTAKAVAEQCDVIITMLP 67 (296)
T ss_pred EccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCee-------cCCHHHHHhcCCEEEEeCC
Confidence 47999999999999999999999999987754332223321 1223456778999998733
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.016 Score=46.66 Aligned_cols=83 Identities=12% Similarity=0.012 Sum_probs=46.3
Q ss_pred ccccCccHHHHHHHHHhCCCcEEE--EEcCchhhhhhc-CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----hhh
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKA--LVKDKRNAMESF-GTYVESMAGDASNKKFLKTALRGVRSIICPSEGF----ISN 79 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~--~~R~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~----~~~ 79 (208)
.+.||++|+.|++.|.+++|.+.- ..++.++.-+.. -.+. ..++.+.+.. .++++|+||++.+.. +..
T Consensus 10 vGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~---~l~~~~~~~~--~~~~vD~vFla~p~~~s~~~v~ 84 (336)
T PRK05671 10 VGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGK---NLRVREVDSF--DFSQVQLAFFAAGAAVSRSFAE 84 (336)
T ss_pred EccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCc---ceEEeeCChH--HhcCCCEEEEcCCHHHHHHHHH
Confidence 357999999999999987765444 233433321111 1111 2333333221 257899999985422 334
Q ss_pred hhhhcCCCeEEEecee
Q 028525 80 AGSLKGVQHVILLSQL 95 (208)
Q Consensus 80 a~~~~gv~~~v~~Ss~ 95 (208)
.+.++|+ ++|-.|+.
T Consensus 85 ~~~~~G~-~VIDlS~~ 99 (336)
T PRK05671 85 KARAAGC-SVIDLSGA 99 (336)
T ss_pred HHHHCCC-eEEECchh
Confidence 4555676 35556643
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.03 Score=45.76 Aligned_cols=63 Identities=14% Similarity=0.084 Sum_probs=49.7
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEE
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIIC 71 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~ 71 (208)
+.+.|++|+.++.++.+.|++|++++.++........+ ..+.+|+.|.+.+.+..+.+|+|..
T Consensus 7 ilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad--~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 7 IIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVAD--EVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred EECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCc--eEEecCCCCHHHHHHHHhcCCEEEe
Confidence 35789999999999999999999999775442221222 4566899999999999999998764
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.01 Score=41.98 Aligned_cols=62 Identities=15% Similarity=-0.026 Sum_probs=41.8
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhhcCC-ceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKRNAMESFGT-YVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.+|..+++.|.+.| ++|++++|++++..+.... +...+..+..+.+ ++++++|+||++.
T Consensus 26 G~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Dvvi~~~ 89 (155)
T cd01065 26 GAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLE---ELLAEADLIINTT 89 (155)
T ss_pred CCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchh---hccccCCEEEeCc
Confidence 58999999999999986 8899999987764332111 1111222334433 3478899999883
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.025 Score=45.89 Aligned_cols=85 Identities=14% Similarity=0.081 Sum_probs=48.5
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhhcCCce------------EEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKRNAMESFGTYV------------ESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~~~~~v------------~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.||++|++|++.|++.. .++..+.++.++..+....-+ .-+...-.+++. +.++|+||.+.+
T Consensus 10 GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~DvVf~a~p 85 (349)
T PRK08664 10 GATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA----VDDVDIVFSALP 85 (349)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH----hcCCCEEEEeCC
Confidence 469999999999998765 488888666544321111000 001111124443 358999998743
Q ss_pred Cc----hhhhhhhcCCCeEEEeceee
Q 028525 75 GF----ISNAGSLKGVQHVILLSQLS 96 (208)
Q Consensus 75 ~~----~~~a~~~~gv~~~v~~Ss~~ 96 (208)
.. ....+...|++.|...+++.
T Consensus 86 ~~~s~~~~~~~~~~G~~vIDls~~fR 111 (349)
T PRK08664 86 SDVAGEVEEEFAKAGKPVFSNASAHR 111 (349)
T ss_pred hhHHHHHHHHHHHCCCEEEECCchhc
Confidence 32 33455667886554444443
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.014 Score=46.36 Aligned_cols=29 Identities=3% Similarity=-0.151 Sum_probs=26.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCch
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKR 36 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~ 36 (208)
.+.|.+|..++..|.+.||+|+++.|+..
T Consensus 10 iG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 10 LGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred ECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 47999999999999999999999999864
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.056 Score=43.73 Aligned_cols=81 Identities=12% Similarity=0.059 Sum_probs=46.0
Q ss_pred ccccCccHHHHHHHHHhCCCc---EEEEE--cCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc-h---
Q 028525 7 MKRKKMNFRMVILSLIVKRTR---IKALV--KDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF-I--- 77 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~---V~~~~--R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~-~--- 77 (208)
.+.||++|+.|++.|.+++|. +..+. |+..+.... .+.++...++. + +.+.++|+||+|.+.- .
T Consensus 13 vGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~~~~~v~~~~-~----~~~~~~D~vf~a~p~~~s~~~ 85 (344)
T PLN02383 13 VGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EGRDYTVEELT-E----DSFDGVDIALFSAGGSISKKF 85 (344)
T ss_pred EcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cCceeEEEeCC-H----HHHcCCCEEEECCCcHHHHHH
Confidence 467999999999999888874 33333 232222211 12334444443 2 2457899999985432 2
Q ss_pred hhhhhhcCCCeEEEecee
Q 028525 78 SNAGSLKGVQHVILLSQL 95 (208)
Q Consensus 78 ~~a~~~~gv~~~v~~Ss~ 95 (208)
...+...|+ ++|-.|+.
T Consensus 86 ~~~~~~~g~-~VIDlS~~ 102 (344)
T PLN02383 86 GPIAVDKGA-VVVDNSSA 102 (344)
T ss_pred HHHHHhCCC-EEEECCch
Confidence 222334555 46666654
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.009 Score=40.63 Aligned_cols=94 Identities=18% Similarity=0.079 Sum_probs=50.5
Q ss_pred ccccCccHHHHHHHHHhCC-CcEEEEEcCch-h---hhhhcC---CceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc--
Q 028525 7 MKRKKMNFRMVILSLIVKR-TRIKALVKDKR-N---AMESFG---TYVESMAGDASNKKFLKTALRGVRSIICPSEGF-- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~-~---~~~~~~---~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~-- 76 (208)
.+.||++|+.|++.|.+.- +++..+..+.. . .....+ ..-.....+ .+.+ .+.++|+||+|.+..
T Consensus 5 vGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~Dvvf~a~~~~~~ 79 (121)
T PF01118_consen 5 VGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED-ADPE----ELSDVDVVFLALPHGAS 79 (121)
T ss_dssp ESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE-TSGH----HHTTESEEEE-SCHHHH
T ss_pred ECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee-cchh----HhhcCCEEEecCchhHH
Confidence 4569999999999998853 56555544433 2 222211 111222222 3433 348899999996543
Q ss_pred --hhhhhhhcCCCeEEEeceeeeccCCCCcccccc
Q 028525 77 --ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMK 109 (208)
Q Consensus 77 --~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~ 109 (208)
....+...|+ ++|=.|+.. + ..+.++|.-
T Consensus 80 ~~~~~~~~~~g~-~ViD~s~~~--R-~~~~~~~~~ 110 (121)
T PF01118_consen 80 KELAPKLLKAGI-KVIDLSGDF--R-LDDDVPYGL 110 (121)
T ss_dssp HHHHHHHHHTTS-EEEESSSTT--T-TSTTSEEE-
T ss_pred HHHHHHHhhCCc-EEEeCCHHH--h-CCCCCCEEe
Confidence 2334456677 555555432 2 223455554
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.098 Score=38.96 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=56.8
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCc-------------------hhh------hhhcCCc--eEEEEcCCCCHHHHH
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDK-------------------RNA------MESFGTY--VESMAGDASNKKFLK 60 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~-------------------~~~------~~~~~~~--v~~v~~Dl~d~~~l~ 60 (208)
+-|-+|+++++.|...|. ++++++++. .|+ .....+. ++.+..++ +.+.+.
T Consensus 28 G~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i-~~~~~~ 106 (202)
T TIGR02356 28 GAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERV-TAENLE 106 (202)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcC-CHHHHH
Confidence 689999999999999995 888888762 110 0112233 34444444 346677
Q ss_pred HHhcCCCEEEEcCCCc-----hhhhhhhcCCCeEEEeceeee
Q 028525 61 TALRGVRSIICPSEGF-----ISNAGSLKGVQHVILLSQLSV 97 (208)
Q Consensus 61 ~~~~~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~Ss~~~ 97 (208)
+.++++|+||.|.+.. +.+.+.+.++ .+|+.+..+.
T Consensus 107 ~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~i-p~i~~~~~g~ 147 (202)
T TIGR02356 107 LLINNVDLVLDCTDNFATRYLINDACVALGT-PLISAAVVGF 147 (202)
T ss_pred HHHhCCCEEEECCCCHHHHHHHHHHHHHcCC-CEEEEEeccC
Confidence 8889999999885443 3456677776 4667665443
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.013 Score=47.09 Aligned_cols=59 Identities=15% Similarity=0.009 Sum_probs=42.6
Q ss_pred cccCccHHHHHHHHHhC-C-CcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVK-R-TRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~-g-~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.+|.||+.++++|+++ | .+++++.|+..++..+.. ++..+++. ++.+++.++|+||++
T Consensus 162 GAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~---el~~~~i~---~l~~~l~~aDiVv~~ 222 (340)
T PRK14982 162 GATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQA---ELGGGKIL---SLEEALPEADIVVWV 222 (340)
T ss_pred ccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHH---HhccccHH---hHHHHHccCCEEEEC
Confidence 45899999999999865 5 689999998776543321 12224443 466888999999987
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.02 Score=44.41 Aligned_cols=58 Identities=10% Similarity=0.007 Sum_probs=41.4
Q ss_pred cccCccHHHHHHHHHhCCC----cEEEE-EcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRT----RIKAL-VKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~----~V~~~-~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|.+|+.+++.|++.|| +|+++ .|++++.......++.+. .+ ..++++++|+||.|
T Consensus 6 IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~----~~---~~e~~~~aDvVil~ 68 (266)
T PLN02688 6 IGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTA----AS---NTEVVKSSDVIILA 68 (266)
T ss_pred ECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEe----CC---hHHHHhcCCEEEEE
Confidence 4799999999999999998 89998 888776543333344332 12 23456678999977
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.25 Score=35.20 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=41.9
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~ 75 (208)
+.|.+|...++.|++.|++|++++.......... ..+++....+.. + -++++|.||.+++.
T Consensus 20 GGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~~l-~~i~~~~~~~~~-~----dl~~a~lViaaT~d 80 (157)
T PRK06719 20 GGGKIAYRKASGLKDTGAFVTVVSPEICKEMKEL-PYITWKQKTFSN-D----DIKDAHLIYAATNQ 80 (157)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEcCccCHHHHhc-cCcEEEecccCh-h----cCCCceEEEECCCC
Confidence 6999999999999999999999964433221112 245665555543 2 36778999888543
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.027 Score=45.17 Aligned_cols=67 Identities=10% Similarity=-0.017 Sum_probs=42.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCC--ceEEEEc-----CCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGT--YVESMAG-----DASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~--~v~~v~~-----Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|..++..|++.||+|+++.|++++....... +...+.+ .+.-.+++.++++++|+||.+.+
T Consensus 10 IG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 10 LGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred ECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 4799999999999999999999999987653222110 1010001 01111234456788999998843
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.025 Score=47.61 Aligned_cols=64 Identities=9% Similarity=-0.010 Sum_probs=46.1
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCC---ceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGT---YVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~---~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.+.|..|+.+++.|+++||+|++++|++++..+.... +-.+. ...+++++.+.++.+|+||.+
T Consensus 4 ~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~--~~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 4 VIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIV--GAYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred EEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCce--ecCCHHHHHhhcCCCCEEEEE
Confidence 34689999999999999999999999998886443321 10011 234566777777788988866
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.028 Score=45.54 Aligned_cols=86 Identities=10% Similarity=-0.033 Sum_probs=47.2
Q ss_pred ccccCccHHHHHHHHHhC-CCcEEEE-EcCch--h-hhhhcCCceEEE-EcCCCCHHHHHHHhcCCCEEEEcCCCc----
Q 028525 7 MKRKKMNFRMVILSLIVK-RTRIKAL-VKDKR--N-AMESFGTYVESM-AGDASNKKFLKTALRGVRSIICPSEGF---- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~-g~~V~~~-~R~~~--~-~~~~~~~~v~~v-~~Dl~d~~~l~~~~~~~d~vi~~~~~~---- 76 (208)
.+.||.+|..+++.|.+. ++++..+ +++.+ + .....+ .+... ..++.+. +..+.+.++|+||+|.+..
T Consensus 6 iGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~-~l~~~~~~~~~~~-~~~~~~~~~DvVf~alP~~~s~~ 83 (346)
T TIGR01850 6 VGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHP-HLRGLVDLNLEPI-DEEEIAEDADVVFLALPHGVSAE 83 (346)
T ss_pred ECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCc-cccccCCceeecC-CHHHhhcCCCEEEECCCchHHHH
Confidence 356999999999999876 5788855 43332 1 221121 11111 1112211 1223345899999995532
Q ss_pred hhhhhhhcCCCeEEEecee
Q 028525 77 ISNAGSLKGVQHVILLSQL 95 (208)
Q Consensus 77 ~~~a~~~~gv~~~v~~Ss~ 95 (208)
....+..+| +++|-.|+.
T Consensus 84 ~~~~~~~~G-~~VIDlS~~ 101 (346)
T TIGR01850 84 LAPELLAAG-VKVIDLSAD 101 (346)
T ss_pred HHHHHHhCC-CEEEeCChh
Confidence 223344456 467777764
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.012 Score=44.43 Aligned_cols=60 Identities=13% Similarity=0.027 Sum_probs=41.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCC--------ce--EEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGT--------YV--ESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~--------~v--~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
++|.+|+.++..|.+.||+|++++|++++....... ++ .... .+ ..++++.+|+||++.+
T Consensus 8 G~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~---~~---~~ea~~~aDvVilavp 77 (219)
T TIGR01915 8 GTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG---AD---NAEAAKRADVVILAVP 77 (219)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE---eC---hHHHHhcCCEEEEECC
Confidence 389999999999999999999999988764322110 11 1111 12 2456778999998844
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.024 Score=47.75 Aligned_cols=63 Identities=11% Similarity=0.025 Sum_probs=43.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC----CceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG----TYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~----~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|..|+.+++.|+++||+|.+++|++++..++.. .+..+.. ..+++++.+.++.+|.||.+
T Consensus 7 IGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~--~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 7 IGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKG--YHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred EeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCccee--cCCHHHHHhcCCCCCEEEEE
Confidence 478999999999999999999999999988543321 1222111 23555555555567877755
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.035 Score=43.98 Aligned_cols=60 Identities=8% Similarity=-0.116 Sum_probs=41.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.+++.|++.|++|++++|++++.......++.. ..+++++.+....+|+||.+
T Consensus 7 GlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~ 66 (299)
T PRK12490 7 GLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITA----RHSLEELVSKLEAPRTIWVM 66 (299)
T ss_pred cccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEE
Confidence 6899999999999999999999999987754433223321 22444433333346888877
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.02 Score=44.92 Aligned_cols=61 Identities=7% Similarity=-0.015 Sum_probs=41.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|..++..|.++|++|++++|+++........+.. ....++. +++.++|.||.|.+
T Consensus 6 IG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~--~~~~~~~----~~~~~aDlVilavp 66 (279)
T PRK07417 6 VGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLV--DEASTDL----SLLKDCDLVILALP 66 (279)
T ss_pred EeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCc--ccccCCH----hHhcCCCEEEEcCC
Confidence 3689999999999999999999999987764433222211 0011121 34678999998844
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.023 Score=44.51 Aligned_cols=62 Identities=13% Similarity=0.012 Sum_probs=41.9
Q ss_pred cccCccHHHHHHHHHhCC----CcEEEEEcCchh-hhhhcC-CceEEEEcCCCCHHHHHHHhcCCCEEEEc-CCCc
Q 028525 8 KRKKMNFRMVILSLIVKR----TRIKALVKDKRN-AMESFG-TYVESMAGDASNKKFLKTALRGVRSIICP-SEGF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g----~~V~~~~R~~~~-~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~~~~ 76 (208)
.+.|.+|..+++.|+++| ++|++.+|++++ ...+.. .+++.. .+ ..++++.+|+||++ .+..
T Consensus 9 IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~----~~---~~e~~~~aDvVilav~p~~ 77 (279)
T PRK07679 9 LGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGT----HN---KKELLTDANILFLAMKPKD 77 (279)
T ss_pred ECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEe----CC---HHHHHhcCCEEEEEeCHHH
Confidence 379999999999999987 889999997643 332221 134322 12 23456789999988 4433
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.17 Score=37.70 Aligned_cols=62 Identities=5% Similarity=-0.009 Sum_probs=44.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchh-hhhhcC-CceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRN-AMESFG-TYVESMAGDASNKKFLKTALRGVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~ 75 (208)
+.|.+|...++.|++.|++|+++.+...+ ..+... ..+.+...++.. ..+.++|.||.+++.
T Consensus 17 GgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~-----~~l~~adlViaaT~d 80 (202)
T PRK06718 17 GGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEP-----SDIVDAFLVIAATND 80 (202)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCCh-----hhcCCceEEEEcCCC
Confidence 69999999999999999999999876544 222222 246666655543 346789999988543
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.067 Score=44.83 Aligned_cols=59 Identities=12% Similarity=0.037 Sum_probs=44.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchh-h----hhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRN-A----MESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~----~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|..+++.|+++|++|++.+++... . .++...+++++.+|..+ +...++|+||.+
T Consensus 12 G~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~d~vv~~ 75 (450)
T PRK14106 12 GAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPE-----EFLEGVDLVVVS 75 (450)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcch-----hHhhcCCEEEEC
Confidence 46669999999999999999999987532 2 22222367888888876 345679999987
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.02 Score=44.82 Aligned_cols=58 Identities=9% Similarity=-0.042 Sum_probs=40.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc-CCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF-GTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|..|...+.+|+++||+|++++|++++..+.. ..+.... ++..++.+++|+||.+
T Consensus 6 IGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a-------~s~~eaa~~aDvVitm 64 (286)
T COG2084 6 IGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVA-------ASPAEAAAEADVVITM 64 (286)
T ss_pred EcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCccc-------CCHHHHHHhCCEEEEe
Confidence 46899999999999999999999999998843222 2133322 1224566667777765
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.026 Score=47.79 Aligned_cols=64 Identities=11% Similarity=0.002 Sum_probs=45.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCC----ceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGT----YVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~----~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|..|+.+++.|+++||+|.++.|++++...+... +...+ .-..+++++.+.++.+|+||.+
T Consensus 12 IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~-~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 12 AGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPL-YGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred EeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCccc-ccCCCHHHHHhcCCCCCEEEEE
Confidence 4789999999999999999999999998885443211 22111 1123566666666668888866
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.049 Score=40.52 Aligned_cols=74 Identities=3% Similarity=-0.134 Sum_probs=46.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCC-ceEEEEcCCCCHHHHHHHh-cCCCEEEEc-CCCc-hhhhhhh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGT-YVESMAGDASNKKFLKTAL-RGVRSIICP-SEGF-ISNAGSL 83 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~-~~~d~vi~~-~~~~-~~~a~~~ 83 (208)
.+.|.+|+++++.|.+.|++|++.++++.+....... +.+.+ |. ++ .+ ..+|+++.| ..+. ..+.+++
T Consensus 34 ~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v--~~---~~---l~~~~~Dv~vp~A~~~~I~~~~~~~ 105 (200)
T cd01075 34 QGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV--AP---EE---IYSVDADVFAPCALGGVINDDTIPQ 105 (200)
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE--cc---hh---hccccCCEEEecccccccCHHHHHH
Confidence 3689999999999999999999999887664332211 23332 22 22 22 269999966 3332 2334555
Q ss_pred cCCCeE
Q 028525 84 KGVQHV 89 (208)
Q Consensus 84 ~gv~~~ 89 (208)
.+.+.+
T Consensus 106 l~~~~v 111 (200)
T cd01075 106 LKAKAI 111 (200)
T ss_pred cCCCEE
Confidence 565543
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.045 Score=39.11 Aligned_cols=59 Identities=17% Similarity=0.076 Sum_probs=41.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~ 75 (208)
+=|.+|+-+++.|...|.+|++..++|-++.+..-++.++.. +.+++..+|++|.+++.
T Consensus 30 GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~--------~~~a~~~adi~vtaTG~ 88 (162)
T PF00670_consen 30 GYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMT--------LEEALRDADIFVTATGN 88 (162)
T ss_dssp --SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE---------HHHHTTT-SEEEE-SSS
T ss_pred CCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecC--------HHHHHhhCCEEEECCCC
Confidence 579999999999999999999999999876554445666542 55688899999988554
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.018 Score=47.80 Aligned_cols=65 Identities=12% Similarity=-0.068 Sum_probs=43.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEE-------------EcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESM-------------AGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v-------------~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|.+|..++..|.++||+|++++|++++...+......+. .+.++-..+..++++++|+||.|
T Consensus 6 IGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvii~ 83 (411)
T TIGR03026 6 IGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVIIIC 83 (411)
T ss_pred ECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEEEE
Confidence 479999999999999999999999999887544321110000 01111112344567889999987
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.028 Score=47.76 Aligned_cols=67 Identities=7% Similarity=-0.106 Sum_probs=44.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC---------CceEE----EEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG---------TYVES----MAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~---------~~v~~----v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..|++.||+|++++|++++...... ..+.- ..+.+.-.+++.++++++|.||.+.+
T Consensus 10 IG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~Vieavp 89 (495)
T PRK07531 10 IGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWIQESVP 89 (495)
T ss_pred ECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEEEEcCc
Confidence 479999999999999999999999998876432100 00000 00111112345578899999997733
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.022 Score=46.37 Aligned_cols=64 Identities=9% Similarity=-0.063 Sum_probs=43.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|..++..|.+.|++|.++.+++++.......+..++. +. .+++.++++++|+||.|.+
T Consensus 6 IG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~-~~--~~~~~~~~~~aDlVilavP 69 (359)
T PRK06545 6 VGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVID-EL--AADLQRAAAEADLIVLAVP 69 (359)
T ss_pred EEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCc-cc--ccCHHHHhcCCCEEEEeCC
Confidence 4789999999999999999999999887663322111111111 11 2334567889999998844
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.01 Score=42.39 Aligned_cols=68 Identities=12% Similarity=-0.045 Sum_probs=42.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc--C------CceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF--G------TYVESMAGDASNKKFLKTALRGVRSIICPSEGF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~--~------~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~ 76 (208)
.+.|..|.+++..|.++||+|+.+.|+++...... . .++..-. .+.=..++.++++++|.||.+.|..
T Consensus 5 iGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~-~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 5 IGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPE-NIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp ESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEET-TEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred ECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCc-ccccccCHHHHhCcccEEEecccHH
Confidence 46899999999999999999999999976532211 0 1111110 1111234457889999999986544
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.065 Score=44.07 Aligned_cols=58 Identities=9% Similarity=-0.054 Sum_probs=43.0
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHH-HHHh----cCCCEEEEc
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFL-KTAL----RGVRSIICP 72 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l-~~~~----~~~d~vi~~ 72 (208)
+|.+|.+++++|..+|++|+.+.++.+.. .+.++ ...|+++.+++ ..++ .++|++|++
T Consensus 210 SG~~g~~~a~~~~~~Ga~V~~~~g~~~~~---~~~~~--~~~~v~~~~~~~~~~~~~~~~~~D~~i~~ 272 (390)
T TIGR00521 210 SGKMGLALAEAAYKRGADVTLITGPVSLL---TPPGV--KSIKVSTAEEMLEAALNELAKDFDIFISA 272 (390)
T ss_pred cchHHHHHHHHHHHCCCEEEEeCCCCccC---CCCCc--EEEEeccHHHHHHHHHHhhcccCCEEEEc
Confidence 68899999999999999999998776432 12233 45688888777 4333 357999977
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.23 Score=34.26 Aligned_cols=86 Identities=13% Similarity=0.048 Sum_probs=56.7
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCc-------------------hh-------hhhhc-CCceEEEEcCCCCHHHHH
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDK-------------------RN-------AMESF-GTYVESMAGDASNKKFLK 60 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~-------------------~~-------~~~~~-~~~v~~v~~Dl~d~~~l~ 60 (208)
+-|.+|+++++.|...|. ++++++.+. .| +.+.. ..+++.+..++ +.+.+.
T Consensus 9 G~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~-~~~~~~ 87 (135)
T PF00899_consen 9 GAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI-DEENIE 87 (135)
T ss_dssp STSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC-SHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc-cccccc
Confidence 689999999999999996 688876531 01 11111 12456666666 456778
Q ss_pred HHhcCCCEEEEcCCCc-----hhhhhhhcCCCeEEEeceee
Q 028525 61 TALRGVRSIICPSEGF-----ISNAGSLKGVQHVILLSQLS 96 (208)
Q Consensus 61 ~~~~~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~Ss~~ 96 (208)
+.++++|+||.|.+.. +.+.+.+.++ ++|+.+..+
T Consensus 88 ~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~-p~i~~~~~g 127 (135)
T PF00899_consen 88 ELLKDYDIVIDCVDSLAARLLLNEICREYGI-PFIDAGVNG 127 (135)
T ss_dssp HHHHTSSEEEEESSSHHHHHHHHHHHHHTT--EEEEEEEET
T ss_pred ccccCCCEEEEecCCHHHHHHHHHHHHHcCC-CEEEEEeec
Confidence 8889999999885543 3455666776 566666544
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.041 Score=45.08 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=24.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKD 34 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~ 34 (208)
+.|.+|..+++.|.++||+|++++|+
T Consensus 106 G~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 106 GKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred CCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 38999999999999999999999985
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.027 Score=43.70 Aligned_cols=59 Identities=8% Similarity=-0.032 Sum_probs=41.1
Q ss_pred cccCccHHHHHHHHHhCC---CcEEEEEcCchhhhhhcCC-ceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKR---TRIKALVKDKRNAMESFGT-YVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g---~~V~~~~R~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|.+|+.+++.|.+.| ++|.+++|++++....... ++.+. .+ ..+++..+|+||.+.
T Consensus 8 IG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~----~~---~~~~~~~advVil~v 70 (267)
T PRK11880 8 IGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAA----TD---NQEAAQEADVVVLAV 70 (267)
T ss_pred EechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeec----CC---hHHHHhcCCEEEEEc
Confidence 479999999999999988 7899999988765433221 23221 12 234466789999873
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.043 Score=43.30 Aligned_cols=65 Identities=5% Similarity=-0.152 Sum_probs=40.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCC----CCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDA----SNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl----~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|.+|..++..|.+.||+|++++|+++........++.+-.++. .-.++..++ +.+|.||.+.
T Consensus 6 iG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~ 74 (304)
T PRK06522 6 LGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAV 74 (304)
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEec
Confidence 4689999999999999999999999976654332222222101110 001112223 7789999873
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.036 Score=40.39 Aligned_cols=56 Identities=14% Similarity=-0.089 Sum_probs=38.7
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+++++.|..-|.+|++++|+...........+. . .++.+++..+|+|+++
T Consensus 43 G~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~-----~---~~l~ell~~aDiv~~~ 98 (178)
T PF02826_consen 43 GYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVE-----Y---VSLDELLAQADIVSLH 98 (178)
T ss_dssp STSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEE-----E---SSHHHHHHH-SEEEE-
T ss_pred EEcCCcCeEeeeeecCCceeEEecccCChhhhcccccce-----e---eehhhhcchhhhhhhh
Confidence 699999999999999999999999998764311111221 1 1344678889999966
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.062 Score=44.60 Aligned_cols=61 Identities=10% Similarity=0.027 Sum_probs=44.9
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
++|..|+.++..|.+.| .++++..|+.+++..+... +. .+.....+++.+.+..+|+||+|
T Consensus 188 GaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~-~~--~~~~~~~~~l~~~l~~aDiVI~a 249 (414)
T PRK13940 188 GAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSA-FR--NASAHYLSELPQLIKKADIIIAA 249 (414)
T ss_pred cCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH-hc--CCeEecHHHHHHHhccCCEEEEC
Confidence 69999999999999998 5799999998775443211 10 01222345667889999999998
|
|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.077 Score=43.00 Aligned_cols=63 Identities=10% Similarity=0.021 Sum_probs=48.5
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEE
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIIC 71 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~ 71 (208)
+.+.|++|..++..+.+.|++|++++.++........+ +.+.+++.|.+.+.+..+.+|++..
T Consensus 4 iiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad--~~~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 4 ILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVAD--HVVLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred EECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCc--eeEeCCCCCHHHHHHHHhhCCEEEe
Confidence 34689999999999999999999998775442222222 3447899999999999988997754
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.34 Score=36.18 Aligned_cols=62 Identities=8% Similarity=-0.013 Sum_probs=47.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchh-hhhhc-CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRN-AMESF-GTYVESMAGDASNKKFLKTALRGVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~ 75 (208)
+.|.+|..-++.|++.|.+|++++.+... ...+. ..+++++..++.. + .+.+++.||.+++.
T Consensus 16 GgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~-~----dl~~~~lVi~at~d 79 (205)
T TIGR01470 16 GGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDA-D----ILEGAFLVIAATDD 79 (205)
T ss_pred CcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCH-H----HhCCcEEEEECCCC
Confidence 69999999999999999999999877654 22222 2379999998873 2 36789999887543
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.21 Score=33.34 Aligned_cols=68 Identities=15% Similarity=0.063 Sum_probs=52.2
Q ss_pred HHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc-CCC----chhhhhhhcCCCe
Q 028525 15 RMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP-SEG----FISNAGSLKGVQH 88 (208)
Q Consensus 15 ~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~~~----~~~~a~~~~gv~~ 88 (208)
..++++|.++|++|++.+-++.... .++.++.-|++||. .+..+++|.+++. .+. .+.+.+++-|..-
T Consensus 26 ~~VA~~L~e~g~dv~atDI~~~~a~----~g~~~v~DDitnP~--~~iY~~A~lIYSiRpppEl~~~ildva~aVga~l 98 (129)
T COG1255 26 LDVAKRLAERGFDVLATDINEKTAP----EGLRFVVDDITNPN--ISIYEGADLIYSIRPPPELQSAILDVAKAVGAPL 98 (129)
T ss_pred HHHHHHHHHcCCcEEEEecccccCc----ccceEEEccCCCcc--HHHhhCccceeecCCCHHHHHHHHHHHHhhCCCE
Confidence 3578999999999999988776443 57899999999998 5778999999987 332 2455666666653
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.04 Score=45.81 Aligned_cols=60 Identities=15% Similarity=0.010 Sum_probs=44.2
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhhcC-CceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKRNAMESFG-TYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.+|..+++.|...| .+|+++.|+.++...... -+...+ +.+++.+++.++|+||.|+
T Consensus 187 GaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i-----~~~~l~~~l~~aDvVi~aT 248 (417)
T TIGR01035 187 GAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAV-----KFEDLEEYLAEADIVISST 248 (417)
T ss_pred CChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEe-----eHHHHHHHHhhCCEEEECC
Confidence 68999999999999999 889999999876432211 111222 2356778888999999883
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.11 Score=42.50 Aligned_cols=63 Identities=8% Similarity=-0.051 Sum_probs=48.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~ 72 (208)
.++|..|..+++.+.+.|++|++++.++........+ ..+..|..|++.+.+.++ ++|.|+..
T Consensus 5 lG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad--~~~~~~~~d~~~l~~~~~~~~id~v~~~ 69 (380)
T TIGR01142 5 LGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAH--RSYVINMLDGDALRAVIEREKPDYIVPE 69 (380)
T ss_pred ECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCc--eEEEcCCCCHHHHHHHHHHhCCCEEEec
Confidence 4689999999999999999999999876542222222 455678999999988887 78988853
|
This enzyme is an alternative to PurN (TIGR00639) |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.042 Score=43.79 Aligned_cols=29 Identities=7% Similarity=-0.123 Sum_probs=26.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRN 37 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~ 37 (208)
+.|.+|..++..|.+.||+|+++.|+...
T Consensus 12 G~GaiG~~lA~~L~~~g~~V~~~~r~~~~ 40 (313)
T PRK06249 12 GTGAIGGFYGAMLARAGFDVHFLLRSDYE 40 (313)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEEeCCHH
Confidence 69999999999999999999999998644
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.072 Score=42.48 Aligned_cols=57 Identities=11% Similarity=-0.065 Sum_probs=41.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.+|+++++.|...|++|++..|+..........++++. ++.++++.+|+|+++.
T Consensus 23 G~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~--------sl~Eaak~ADVV~llL 79 (335)
T PRK13403 23 GYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM--------SVSEAVRTAQVVQMLL 79 (335)
T ss_pred eEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC--------CHHHHHhcCCEEEEeC
Confidence 68999999999999999999999876333221112244321 4667899999999763
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.027 Score=44.14 Aligned_cols=62 Identities=21% Similarity=0.092 Sum_probs=41.8
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhhcCC--ceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKRNAMESFGT--YVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~~~~--~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.++|.+|++++..|.+.| .+|+++.|+.++....... ....+..++ +..+.+.++|+||+++
T Consensus 129 lGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~----~~~~~~~~~DivInaT 193 (278)
T PRK00258 129 LGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDL----ELQEELADFDLIINAT 193 (278)
T ss_pred EcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecc----cchhccccCCEEEECC
Confidence 368999999999999999 8999999998775332110 110011111 2235667899999883
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.017 Score=42.43 Aligned_cols=65 Identities=8% Similarity=-0.037 Sum_probs=37.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEE-------------cCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMA-------------GDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~-------------~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|++|..++-.|.+.||+|++++.++++...+......+.+ +.+.-..+..+++.++|++|.|
T Consensus 6 iGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~I~ 83 (185)
T PF03721_consen 6 IGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVFIC 83 (185)
T ss_dssp E--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEEE-
T ss_pred ECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEEEe
Confidence 4799999999999999999999999988764433221111111 1111122334566778999977
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.084 Score=42.12 Aligned_cols=56 Identities=16% Similarity=0.066 Sum_probs=42.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.||+.+++.|..-|++|++++|+.++.. ++..+ ....++.++++++|+|+++.
T Consensus 143 G~G~IG~~vA~~l~afG~~V~~~~~~~~~~~-----~~~~~----~~~~~l~e~l~~aDvvv~~l 198 (312)
T PRK15469 143 GAGVLGSKVAQSLQTWGFPLRCWSRSRKSWP-----GVQSF----AGREELSAFLSQTRVLINLL 198 (312)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCCC-----Cceee----cccccHHHHHhcCCEEEECC
Confidence 6999999999999999999999988654321 22222 13457888999999999773
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.079 Score=41.89 Aligned_cols=64 Identities=11% Similarity=-0.112 Sum_probs=40.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEc--CC----CCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAG--DA----SNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~--Dl----~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|.+|..++..|.+.||+|+.++| .++.......++.+... +. .-..+..++...+|+||.+
T Consensus 6 iG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vila 75 (305)
T PRK12921 6 VGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILA 75 (305)
T ss_pred ECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEE
Confidence 36899999999999999999999999 55433222222322211 10 0011223345778999987
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.075 Score=43.07 Aligned_cols=64 Identities=6% Similarity=-0.106 Sum_probs=42.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh----cCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES----FGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~----~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|..-|.+|++++|+..+.... ....+..+........++.+++..+|+|+++
T Consensus 166 G~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~ 233 (347)
T PLN02928 166 GYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC 233 (347)
T ss_pred CCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence 699999999999999999999999874332110 0011111111111345778899999999976
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.057 Score=43.06 Aligned_cols=61 Identities=13% Similarity=-0.022 Sum_probs=43.6
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhhcCC-ceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKRNAMESFGT-YVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|.+|..+++.|...| ++|+++.|++++..++... +..++ +.+++.+++..+|+||.+++
T Consensus 185 GaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~-----~~~~~~~~l~~aDvVi~at~ 247 (311)
T cd05213 185 GAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAV-----PLDELLELLNEADVVISATG 247 (311)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEE-----eHHHHHHHHhcCCEEEECCC
Confidence 68999999999999866 7899999998764332111 22222 33456777888999998843
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.12 Score=41.43 Aligned_cols=67 Identities=3% Similarity=-0.161 Sum_probs=43.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-----------cCCceE--EEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-----------FGTYVE--SMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-----------~~~~v~--~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..++..||+|++++++++..... ...+.. .....++-.+++.+++.++|.|+-+.+
T Consensus 13 IGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlViEavp 92 (321)
T PRK07066 13 IGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFIQESAP 92 (321)
T ss_pred ECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEEEECCc
Confidence 4799999999999999999999999987642110 001110 001112222346678899999997733
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.14 Score=41.96 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=45.8
Q ss_pred cccCccHHH--HHHHHHhCCCcEEEEEcCch--h-------------hh---hhcCCceEEEEcCCCCHHHHHHHhc---
Q 028525 8 KRKKMNFRM--VILSLIVKRTRIKALVKDKR--N-------------AM---ESFGTYVESMAGDASNKKFLKTALR--- 64 (208)
Q Consensus 8 ~~~G~iG~~--l~~~Ll~~g~~V~~~~R~~~--~-------------~~---~~~~~~v~~v~~Dl~d~~~l~~~~~--- 64 (208)
++++.+|.+ +++.| +.|.+|.++.+..+ . .. +..+..+..+.+|+++++++.++++
T Consensus 48 GaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v~~lie~I~ 126 (398)
T PRK13656 48 GASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIKQKVIELIK 126 (398)
T ss_pred CCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 457789999 89999 99999988885321 1 11 1122345678999999888877763
Q ss_pred ----CCCEEEEc
Q 028525 65 ----GVRSIICP 72 (208)
Q Consensus 65 ----~~d~vi~~ 72 (208)
++|++|++
T Consensus 127 e~~G~IDiLVnS 138 (398)
T PRK13656 127 QDLGQVDLVVYS 138 (398)
T ss_pred HhcCCCCEEEEC
Confidence 46999977
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.032 Score=44.38 Aligned_cols=38 Identities=8% Similarity=-0.012 Sum_probs=31.3
Q ss_pred Cchhhhc--cccCccHHHHHHHHHhCCCcEEEEEcCchhh
Q 028525 1 MGPMKKM--KRKKMNFRMVILSLIVKRTRIKALVKDKRNA 38 (208)
Q Consensus 1 ~~~~~~~--~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~ 38 (208)
|-+|++. .+.|.+|..++..|++.||+|+++++++++.
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~ 40 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGAL 40 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence 4455543 4799999999999999999999999987653
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.074 Score=42.03 Aligned_cols=57 Identities=7% Similarity=-0.078 Sum_probs=38.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|.+|+.+++.|++.||+|++.+|+++. ......+... ..++ .++.+++|+||.+
T Consensus 6 IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~-~~~~~~g~~~----~~s~---~~~~~~advVi~~ 62 (292)
T PRK15059 6 IGLGIMGTPMAINLARAGHQLHVTTIGPVA-DELLSLGAVS----VETA---RQVTEASDIIFIM 62 (292)
T ss_pred EccCHHHHHHHHHHHHCCCeEEEEeCCHhH-HHHHHcCCee----cCCH---HHHHhcCCEEEEe
Confidence 369999999999999999999999987642 2221222221 1222 3455678888876
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.58 Score=34.73 Aligned_cols=90 Identities=8% Similarity=0.107 Sum_probs=57.2
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCch---hh------------------------hhhcCC--ceEEEEcCCCC-HH
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKR---NA------------------------MESFGT--YVESMAGDASN-KK 57 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~---~~------------------------~~~~~~--~v~~v~~Dl~d-~~ 57 (208)
+-|-+|+++++.|...| .++++++.+.- .. .+...+ +++.+..++++ .+
T Consensus 26 G~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~ 105 (198)
T cd01485 26 GAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEEDSLSNDS 105 (198)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEecccccchh
Confidence 57779999999999999 56888865411 00 011223 34455555542 44
Q ss_pred HHHHHhcCCCEEEEcCCCc-----hhhhhhhcCCCeEEEeceeeecc
Q 028525 58 FLKTALRGVRSIICPSEGF-----ISNAGSLKGVQHVILLSQLSVYR 99 (208)
Q Consensus 58 ~l~~~~~~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~Ss~~~~~ 99 (208)
...+.+.++|+||.+.... +.+.+.+.++ .+|+.++.+.++
T Consensus 106 ~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~i-p~i~~~~~G~~G 151 (198)
T cd01485 106 NIEEYLQKFTLVIATEENYERTAKVNDVCRKHHI-PFISCATYGLIG 151 (198)
T ss_pred hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCC-CEEEEEeecCEE
Confidence 5566788999999884332 3456777777 577777666554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.17 Score=40.44 Aligned_cols=68 Identities=12% Similarity=0.007 Sum_probs=49.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC--CceEEEE-----cCCCCHHHHHHHhcCCCEEEEcCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG--TYVESMA-----GDASNKKFLKTALRGVRSIICPSEG 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~--~~v~~v~-----~Dl~d~~~l~~~~~~~d~vi~~~~~ 75 (208)
.+.|.=|.+|+..|.++||+|+...|+++-..+... .+..+.. .++.-..++.++++++|.|+.+.|.
T Consensus 7 iGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 7 IGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred EcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 578999999999999999999999999876433322 2333332 2233355688899999999988553
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.063 Score=44.73 Aligned_cols=60 Identities=20% Similarity=0.027 Sum_probs=43.9
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCchhhhhhcCC-ceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDKRNAMESFGT-YVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
++|.+|..+++.|...|. +|+++.|++++...+... +.. ..+.+++.+.+.++|+||.|+
T Consensus 189 GaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~-----~~~~~~~~~~l~~aDvVI~aT 250 (423)
T PRK00045 189 GAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGE-----AIPLDELPEALAEADIVISST 250 (423)
T ss_pred CchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-----EeeHHHHHHHhccCCEEEECC
Confidence 699999999999999996 799999998774322111 112 223456677788999999884
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.14 Score=39.72 Aligned_cols=63 Identities=14% Similarity=-0.006 Sum_probs=37.2
Q ss_pred hhhhc--cccCccHHHHHHHHHhC-CCcEEEEE-cCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 3 PMKKM--KRKKMNFRMVILSLIVK-RTRIKALV-KDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 3 ~~~~~--~~~G~iG~~l~~~Ll~~-g~~V~~~~-R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
||+.. +.+|++|+.+++.+.+. +.++.++. +++++.... . ..++...+++.++++++|+||.+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~--~-----~~~i~~~~dl~~ll~~~DvVid~ 67 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ--G-----ALGVAITDDLEAVLADADVLIDF 67 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc--C-----CCCccccCCHHHhccCCCEEEEC
Confidence 45443 34699999999988864 68888755 444332211 1 11222233445556678988855
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.084 Score=42.49 Aligned_cols=55 Identities=11% Similarity=-0.028 Sum_probs=41.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|.||+.+++.|...|++|++++|++..... .++ . ..++.++++++|+|+++.|
T Consensus 153 G~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~~~-----~--~~~l~ell~~aDiVil~lP 207 (330)
T PRK12480 153 GTGRIGAATAKIYAGFGATITAYDAYPNKDLD----FLT-----Y--KDSVKEAIKDADIISLHVP 207 (330)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----hhh-----c--cCCHHHHHhcCCEEEEeCC
Confidence 69999999999999999999999988754221 111 1 2346678999999997633
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.095 Score=43.03 Aligned_cols=57 Identities=4% Similarity=-0.165 Sum_probs=40.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|..-|.+|++++|...........++.. ..++.++++.+|+|+++
T Consensus 199 G~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~-------~~~l~ell~~aDvV~l~ 255 (385)
T PRK07574 199 GAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTY-------HVSFDSLVSVCDVVTIH 255 (385)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCcee-------cCCHHHHhhcCCEEEEc
Confidence 6999999999999999999999998763221111112221 23466788999999966
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.46 Score=35.70 Aligned_cols=86 Identities=7% Similarity=0.049 Sum_probs=54.2
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCc---h---------------hh------hhhcCC--ceEEEEcCCCCHHHHHH
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDK---R---------------NA------MESFGT--YVESMAGDASNKKFLKT 61 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~---~---------------~~------~~~~~~--~v~~v~~Dl~d~~~l~~ 61 (208)
+-|-+|+.+++.|...|. ++++++.+. + |. .....+ .++.+...+++ +.+.+
T Consensus 35 G~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~-~~~~~ 113 (212)
T PRK08644 35 GAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKIDE-DNIEE 113 (212)
T ss_pred CcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeecCH-HHHHH
Confidence 589999999999999995 588887761 1 10 001123 34455555544 55667
Q ss_pred HhcCCCEEEEcCCCc-----hhhhhhhc-CCCeEEEeceee
Q 028525 62 ALRGVRSIICPSEGF-----ISNAGSLK-GVQHVILLSQLS 96 (208)
Q Consensus 62 ~~~~~d~vi~~~~~~-----~~~a~~~~-gv~~~v~~Ss~~ 96 (208)
.++++|+||.|.+.. +.+.+.+. ++ .+|+.+..+
T Consensus 114 ~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~-p~I~~~~~~ 153 (212)
T PRK08644 114 LFKDCDIVVEAFDNAETKAMLVETVLEHPGK-KLVAASGMA 153 (212)
T ss_pred HHcCCCEEEECCCCHHHHHHHHHHHHHhCCC-CEEEeehhh
Confidence 889999999885433 23445555 65 466665433
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.15 Score=42.87 Aligned_cols=56 Identities=11% Similarity=0.056 Sum_probs=40.2
Q ss_pred cHHHHHHHHHhCCCcEEEEEcCchhhhhhcCC-----ceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 13 NFRMVILSLIVKRTRIKALVKDKRNAMESFGT-----YVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 13 iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~-----~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.|+.+++.|+++||+|.+++|++++..++... ++.. ..+++++.+.++.+++||.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEE
Confidence 38999999999999999999998886544321 2222 23566666666668888866
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.069 Score=36.47 Aligned_cols=75 Identities=12% Similarity=-0.038 Sum_probs=41.6
Q ss_pred cccCccHHHHHHHHHh-CCCcEEEE-EcCchhhh-----hhc---CCceEEEEcCCCCHHHHHHHhcCCCEEEEc-CCCc
Q 028525 8 KRKKMNFRMVILSLIV-KRTRIKAL-VKDKRNAM-----ESF---GTYVESMAGDASNKKFLKTALRGVRSIICP-SEGF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~-~g~~V~~~-~R~~~~~~-----~~~---~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~~~~ 76 (208)
+.+|+.|+.+++.+.+ .++++.+. +|+++... +.. ..++.+ .+++.+++..+|++|.. .+..
T Consensus 7 G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v-------~~~l~~~~~~~DVvIDfT~p~~ 79 (124)
T PF01113_consen 7 GASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV-------TDDLEELLEEADVVIDFTNPDA 79 (124)
T ss_dssp TTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE-------BS-HHHHTTH-SEEEEES-HHH
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCccccc-------chhHHHhcccCCEEEEcCChHH
Confidence 4579999999999999 57886665 45552211 111 111221 24455677779999965 3322
Q ss_pred ---hhhhhhhcCCCeE
Q 028525 77 ---ISNAGSLKGVQHV 89 (208)
Q Consensus 77 ---~~~a~~~~gv~~~ 89 (208)
..+.+.+.|++-+
T Consensus 80 ~~~~~~~~~~~g~~~V 95 (124)
T PF01113_consen 80 VYDNLEYALKHGVPLV 95 (124)
T ss_dssp HHHHHHHHHHHT-EEE
T ss_pred hHHHHHHHHhCCCCEE
Confidence 3445556676543
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.065 Score=51.00 Aligned_cols=57 Identities=5% Similarity=-0.169 Sum_probs=40.7
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|..+++.|++.||+|++++|++++...+...+... ..+ ..++++++|+||.+
T Consensus 331 GlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~----~~s---~~e~~~~aDvVi~~ 387 (1378)
T PLN02858 331 GLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLA----GNS---PAEVAKDVDVLVIM 387 (1378)
T ss_pred CchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCee----cCC---HHHHHhcCCEEEEe
Confidence 6999999999999999999999999987754433223222 122 23456667777766
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.092 Score=43.96 Aligned_cols=59 Identities=14% Similarity=-0.079 Sum_probs=41.0
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc-CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF-GTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
++|.+|..+++.|.+.|++|++++|++++..+.. ..++.+ ..+..+++.++|+||+|.+
T Consensus 8 G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~-------~~~~~e~~~~aDvVIlavp 67 (437)
T PRK08655 8 GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEY-------ANDNIDAAKDADIVIISVP 67 (437)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCee-------ccCHHHHhccCCEEEEecC
Confidence 4899999999999999999999999876632211 112321 1123456778899998743
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.085 Score=40.35 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=37.6
Q ss_pred cccCccHHHHHHHHHhCCC---c-EEEEEcC-chhhhhhcC-CceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRT---R-IKALVKD-KRNAMESFG-TYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~---~-V~~~~R~-~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..|++.++ + +++..|+ +++...... .++... .| ..++++++|+||++.+
T Consensus 10 IG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~DiViiavp 75 (245)
T PRK07634 10 IGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTT----TD---WKQHVTSVDTIVLAMP 75 (245)
T ss_pred ECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEe----CC---hHHHHhcCCEEEEecC
Confidence 3799999999999998863 3 6667775 344332221 123321 22 2345678999998844
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.074 Score=43.83 Aligned_cols=60 Identities=18% Similarity=0.066 Sum_probs=49.2
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+-|..|.-++++|.+.| .+|+++.|+.+++.++-.. +. ++....+.+...+..+|+||++
T Consensus 185 GAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~-~~---~~~~~l~el~~~l~~~DvViss 245 (414)
T COG0373 185 GAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKK-LG---AEAVALEELLEALAEADVVISS 245 (414)
T ss_pred cccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHH-hC---CeeecHHHHHHhhhhCCEEEEe
Confidence 68999999999999999 8899999999887644221 22 5666778888899999999988
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.67 Score=34.49 Aligned_cols=66 Identities=8% Similarity=-0.002 Sum_probs=46.3
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcC---chhhh---------------------hhcCC--ceEEEEcCCCCHHHHHH
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKD---KRNAM---------------------ESFGT--YVESMAGDASNKKFLKT 61 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~---~~~~~---------------------~~~~~--~v~~v~~Dl~d~~~l~~ 61 (208)
+-|.+|+.++..|...|. ++++++++ .+.+. ....+ .++.+..+++ .+.+.+
T Consensus 28 G~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i~-~~~~~~ 106 (200)
T TIGR02354 28 GLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEKIT-EENIDK 106 (200)
T ss_pred CcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeeeCC-HhHHHH
Confidence 589999999999999997 69888876 22110 01122 3455555664 567788
Q ss_pred HhcCCCEEEEcCCC
Q 028525 62 ALRGVRSIICPSEG 75 (208)
Q Consensus 62 ~~~~~d~vi~~~~~ 75 (208)
.+.++|.||.|.+.
T Consensus 107 ~~~~~DlVi~a~Dn 120 (200)
T TIGR02354 107 FFKDADIVCEAFDN 120 (200)
T ss_pred HhcCCCEEEECCCC
Confidence 89999999988544
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.067 Score=50.88 Aligned_cols=58 Identities=7% Similarity=-0.118 Sum_probs=41.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|..|..+++.|++.||+|++++|++++...+...+.... ++..++.+++|+||.+
T Consensus 10 IGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~-------~s~~e~a~~advVi~~ 67 (1378)
T PLN02858 10 VGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRC-------DSPAEAAKDAAALVVV 67 (1378)
T ss_pred EchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeec-------CCHHHHHhcCCEEEEE
Confidence 468999999999999999999999999887654433333221 2234455667777755
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.024 Score=44.64 Aligned_cols=67 Identities=12% Similarity=-0.041 Sum_probs=43.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc-------CCceEE---E-------EcCCCCHHHHHHHhcCCCEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF-------GTYVES---M-------AGDASNKKFLKTALRGVRSII 70 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~-------~~~v~~---v-------~~Dl~d~~~l~~~~~~~d~vi 70 (208)
.+.|.+|..++..|+++||+|+++++++++..... ..+++. . ...++-.+++.++++++|.||
T Consensus 7 IG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi 86 (288)
T PRK09260 7 VGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVADADLVI 86 (288)
T ss_pred ECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcCCCEEE
Confidence 46899999999999999999999999987643211 001100 0 000111234557889999999
Q ss_pred EcCC
Q 028525 71 CPSE 74 (208)
Q Consensus 71 ~~~~ 74 (208)
.|.+
T Consensus 87 ~avp 90 (288)
T PRK09260 87 EAVP 90 (288)
T ss_pred Eecc
Confidence 8743
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.17 Score=41.65 Aligned_cols=62 Identities=10% Similarity=-0.033 Sum_probs=47.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~ 72 (208)
+.|..|..++..+.+.|++|++++.++........+ ..+..|..|.+.+.+.++ ++|.|+..
T Consensus 19 G~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~ad--~~~~~~~~d~~~l~~~~~~~~id~vi~~ 82 (395)
T PRK09288 19 GSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAH--RSHVIDMLDGDALRAVIEREKPDYIVPE 82 (395)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhhh--heEECCCCCHHHHHHHHHHhCCCEEEEe
Confidence 688899999999999999999999876442111111 356778899999988887 78988854
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.084 Score=37.11 Aligned_cols=62 Identities=5% Similarity=-0.121 Sum_probs=40.0
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEc----------CCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAG----------DASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~----------Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|.+|..++..|.+.|++|..+.|+. ........++.+... ...++ ......+|.||.|.-
T Consensus 5 G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 5 GAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAP---SADAGPYDLVIVAVK 76 (151)
T ss_dssp STSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSH---GHHHSTESEEEE-SS
T ss_pred CcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcc---hhccCCCcEEEEEec
Confidence 579999999999999999999999998 432221112222222 22222 234567899998843
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.54 Score=38.58 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=55.2
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCc-------------------hhh---hh---hcCCc--eEEEEcCCCCHHHHH
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDK-------------------RNA---ME---SFGTY--VESMAGDASNKKFLK 60 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~-------------------~~~---~~---~~~~~--v~~v~~Dl~d~~~l~ 60 (208)
+.|-+|++++..|...|. ++++++++. .|. .+ ...+. ++.+...++ .+.+.
T Consensus 142 G~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~-~~~~~ 220 (376)
T PRK08762 142 GAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERVT-SDNVE 220 (376)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEeccCC-hHHHH
Confidence 589999999999999995 688888761 121 00 11233 344444444 45667
Q ss_pred HHhcCCCEEEEcCCCc-----hhhhhhhcCCCeEEEecee
Q 028525 61 TALRGVRSIICPSEGF-----ISNAGSLKGVQHVILLSQL 95 (208)
Q Consensus 61 ~~~~~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~Ss~ 95 (208)
+.++++|+||.|++.. +.+++.+.++ .+|+.+..
T Consensus 221 ~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~i-p~i~~~~~ 259 (376)
T PRK08762 221 ALLQDVDVVVDGADNFPTRYLLNDACVKLGK-PLVYGAVF 259 (376)
T ss_pred HHHhCCCEEEECCCCHHHHHHHHHHHHHcCC-CEEEEEec
Confidence 7888999999885543 3456677776 45666543
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.54 Score=35.67 Aligned_cols=86 Identities=12% Similarity=0.077 Sum_probs=54.3
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCc-------------------hhh------hhhcCC--ceEEEEcCCCCHHHHH
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDK-------------------RNA------MESFGT--YVESMAGDASNKKFLK 60 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~-------------------~~~------~~~~~~--~v~~v~~Dl~d~~~l~ 60 (208)
+-|-+|+++++.|...|. ++++++.+. .|. .....+ +++.+..++ +.+.+.
T Consensus 28 G~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i-~~~~~~ 106 (228)
T cd00757 28 GAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERL-DAENAE 106 (228)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEeccee-CHHHHH
Confidence 689999999999999994 666665431 010 001122 345555555 356677
Q ss_pred HHhcCCCEEEEcCCCc-----hhhhhhhcCCCeEEEeceee
Q 028525 61 TALRGVRSIICPSEGF-----ISNAGSLKGVQHVILLSQLS 96 (208)
Q Consensus 61 ~~~~~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~Ss~~ 96 (208)
+.+.++|+||.|.+.. +.+.+.+.++ .+|+.+..+
T Consensus 107 ~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~i-p~i~~g~~g 146 (228)
T cd00757 107 ELIAGYDLVLDCTDNFATRYLINDACVKLGK-PLVSGAVLG 146 (228)
T ss_pred HHHhCCCEEEEcCCCHHHHHHHHHHHHHcCC-CEEEEEecc
Confidence 7889999999885433 3455666776 466665433
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.7 Score=32.14 Aligned_cols=86 Identities=20% Similarity=0.174 Sum_probs=53.4
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCc--------------h-----hh------hhhcCC--ceEEEEcCCCCHHHHH
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDK--------------R-----NA------MESFGT--YVESMAGDASNKKFLK 60 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~--------------~-----~~------~~~~~~--~v~~v~~Dl~d~~~l~ 60 (208)
+-|.+|+++++.|...|. ++++++.+. + |. .....+ .++.+..++.+. ...
T Consensus 6 G~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~~-~~~ 84 (143)
T cd01483 6 GLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISED-NLD 84 (143)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecChh-hHH
Confidence 579999999999999996 688886541 1 10 001122 344455555443 336
Q ss_pred HHhcCCCEEEEcCCCc-----hhhhhhhcCCCeEEEeceee
Q 028525 61 TALRGVRSIICPSEGF-----ISNAGSLKGVQHVILLSQLS 96 (208)
Q Consensus 61 ~~~~~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~Ss~~ 96 (208)
+.+.++|+||.+.+.. +.+.+++.+++ ++..++.+
T Consensus 85 ~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~-~i~~~~~g 124 (143)
T cd01483 85 DFLDGVDLVIDAIDNIAVRRALNRACKELGIP-VIDAGGLG 124 (143)
T ss_pred HHhcCCCEEEECCCCHHHHHHHHHHHHHcCCC-EEEEcCCC
Confidence 6778999999884433 34567777764 55555443
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.12 Score=40.48 Aligned_cols=62 Identities=10% Similarity=-0.045 Sum_probs=42.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCH---HHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNK---KFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~---~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.+++.|.++||.|.++.++.+........ ..++.|. +....+...+|+||++.|
T Consensus 9 vG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~-----~lgv~d~~~~~~~~~~~~~aD~VivavP 73 (279)
T COG0287 9 VGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL-----ELGVIDELTVAGLAEAAAEADLVIVAVP 73 (279)
T ss_pred ECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh-----hcCcccccccchhhhhcccCCEEEEecc
Confidence 3699999999999999999999998887664322111 1222222 112456667899998744
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.15 Score=40.57 Aligned_cols=61 Identities=7% Similarity=-0.052 Sum_probs=41.1
Q ss_pred ccCccHHHHHHHHHhCCC--cEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRT--RIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~--~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|.+|..++..|.+.|+ +|++++|++++.......++.... ..+ ..+++.++|+||.|.+
T Consensus 13 G~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~--~~~---~~~~~~~aDvViiavp 75 (307)
T PRK07502 13 GIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRV--TTS---AAEAVKGADLVILCVP 75 (307)
T ss_pred eeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCcee--cCC---HHHHhcCCCEEEECCC
Confidence 699999999999999884 899999987764332222221111 112 3446778999998844
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.094 Score=40.99 Aligned_cols=62 Identities=11% Similarity=-0.032 Sum_probs=42.3
Q ss_pred cccCccHHHHHHHHHhCCC----cEEEEEcCchhhhhhcC-CceEEEEcCCCCHHHHHHHhcCCCEEEEc-CCCc
Q 028525 8 KRKKMNFRMVILSLIVKRT----RIKALVKDKRNAMESFG-TYVESMAGDASNKKFLKTALRGVRSIICP-SEGF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~----~V~~~~R~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~~~~ 76 (208)
.+.|.+|+++++.|+++|+ +|++.+|++++...... .+++.. .+. .++++.+|+||+| .|..
T Consensus 8 IG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~----~~~---~e~~~~aDiIiLavkP~~ 75 (272)
T PRK12491 8 IGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITIT----TNN---NEVANSADILILSIKPDL 75 (272)
T ss_pred ECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEe----CCc---HHHHhhCCEEEEEeChHH
Confidence 4799999999999999874 69999988877543321 234321 222 2356688999988 4433
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.1 Score=41.99 Aligned_cols=55 Identities=15% Similarity=-0.066 Sum_probs=40.1
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|..-|.+|++++|+....... ..++. . .++.++++.+|+|+++
T Consensus 157 G~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~-~~~~~-----~---~~l~ell~~aDiV~l~ 211 (333)
T PRK13243 157 GFGRIGQAVARRAKGFGMRILYYSRTRKPEAEK-ELGAE-----Y---RPLEELLRESDFVSLH 211 (333)
T ss_pred CcCHHHHHHHHHHHHCCCEEEEECCCCChhhHH-HcCCE-----e---cCHHHHHhhCCEEEEe
Confidence 699999999999999999999999876442211 11121 1 2456788899999976
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.74 Score=35.30 Aligned_cols=86 Identities=6% Similarity=-0.022 Sum_probs=55.1
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCch-------------------hh------hhhcCCc--eEEEEcCCCCHHHHH
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKR-------------------NA------MESFGTY--VESMAGDASNKKFLK 60 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~-------------------~~------~~~~~~~--v~~v~~Dl~d~~~l~ 60 (208)
+-|.+|++++..|...| -++++++++.- |. .....+. ++.+...+ +.+.+.
T Consensus 31 G~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i-~~~~~~ 109 (240)
T TIGR02355 31 GLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKL-DDAELA 109 (240)
T ss_pred CcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccC-CHHHHH
Confidence 58999999999999998 46777765421 10 0011233 44444444 345677
Q ss_pred HHhcCCCEEEEcCCCc-----hhhhhhhcCCCeEEEeceee
Q 028525 61 TALRGVRSIICPSEGF-----ISNAGSLKGVQHVILLSQLS 96 (208)
Q Consensus 61 ~~~~~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~Ss~~ 96 (208)
+.+.++|+||.+.+.. +.+++.+.+++ +|+.++.+
T Consensus 110 ~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip-~v~~~~~g 149 (240)
T TIGR02355 110 ALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVP-LVSGAAIR 149 (240)
T ss_pred HHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCC-EEEEEecc
Confidence 8889999999885543 34567777764 66665544
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.079 Score=43.16 Aligned_cols=66 Identities=5% Similarity=-0.132 Sum_probs=45.8
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEE-----------cC--CCCHHHHHHHhcCCCEEEEc
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMA-----------GD--ASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~-----------~D--l~d~~~l~~~~~~~d~vi~~ 72 (208)
+.++|++|....--|.+.||+|+.++.+++|...+......+++ .+ +.=-.+..++++++|++|+|
T Consensus 5 viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~fIa 83 (414)
T COG1004 5 VIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVFIA 83 (414)
T ss_pred EECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEEEE
Confidence 35799999999999999999999999998885433211111111 11 22234556788999999988
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.96 Score=34.87 Aligned_cols=82 Identities=15% Similarity=0.054 Sum_probs=59.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCCC-------chh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSEG-------FIS 78 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~-------~~~ 78 (208)
++|+. |+.|++.|.++|++|++-+-...... ....+.++.+-+.|.+.+.+.++ ++++||.++-. ...
T Consensus 9 gGT~e-gr~la~~L~~~g~~v~~Svat~~g~~--~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~ 85 (248)
T PRK08057 9 GGTSE-ARALARALAAAGVDIVLSLAGRTGGP--ADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAA 85 (248)
T ss_pred echHH-HHHHHHHHHhCCCeEEEEEccCCCCc--ccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHH
Confidence 34443 89999999999998888766553332 22467888999989999999996 68999987322 245
Q ss_pred hhhhhcCCCeEEEe
Q 028525 79 NAGSLKGVQHVILL 92 (208)
Q Consensus 79 ~a~~~~gv~~~v~~ 92 (208)
++|++.|++.+-|-
T Consensus 86 ~ac~~~~ipyiR~e 99 (248)
T PRK08057 86 AACRALGIPYLRLE 99 (248)
T ss_pred HHHHHhCCcEEEEe
Confidence 67888888755554
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.088 Score=44.94 Aligned_cols=63 Identities=6% Similarity=0.018 Sum_probs=45.1
Q ss_pred cccCccHHHHHHHHHhCCC-cEEEEEcCchhhhhhcC--CceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRT-RIKALVKDKRNAMESFG--TYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~~~~--~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|.+|+.+++.|...|. +|+++.|+.++...+.. .++.+... +.+++.+++.++|+||.++
T Consensus 272 IGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~---~~~dl~~al~~aDVVIsAT 337 (519)
T PLN00203 272 IGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYK---PLDEMLACAAEADVVFTST 337 (519)
T ss_pred EeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEee---cHhhHHHHHhcCCEEEEcc
Confidence 3689999999999999995 79999999887543321 12222222 3345567888999999883
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.18 Score=41.90 Aligned_cols=58 Identities=10% Similarity=-0.104 Sum_probs=42.9
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+-|.||+.++..|...|.+|++..+++.+..+....+.+++ + +.++++++|+||.+++
T Consensus 219 G~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~-----~---l~eal~~aDVVI~aTG 276 (425)
T PRK05476 219 GYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM-----T---MEEAAELGDIFVTATG 276 (425)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec-----C---HHHHHhCCCEEEECCC
Confidence 58999999999999999999999998877433222234422 2 3456779999998854
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.11 Score=43.38 Aligned_cols=40 Identities=8% Similarity=-0.047 Sum_probs=31.8
Q ss_pred chhhh-ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc
Q 028525 2 GPMKK-MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF 42 (208)
Q Consensus 2 ~~~~~-~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~ 42 (208)
+||+. ..+.|++|..++..|.+ ||+|+++++++++...+.
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK 45 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH
Confidence 46644 25799999999998765 799999999998865543
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.18 Score=42.36 Aligned_cols=57 Identities=9% Similarity=-0.081 Sum_probs=42.1
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+-|.||+.+++.|...|.+|++..+++.+.......+++++ .+.++++.+|+||.++
T Consensus 261 G~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~--------~leell~~ADIVI~at 317 (476)
T PTZ00075 261 GYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVV--------TLEDVVETADIFVTAT 317 (476)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceec--------cHHHHHhcCCEEEECC
Confidence 68999999999999999999999888766422222234332 2456788999999874
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.1 Score=41.98 Aligned_cols=29 Identities=3% Similarity=-0.196 Sum_probs=26.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCch
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKR 36 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~ 36 (208)
.+.|.+|..++..|.+.||+|++++|++.
T Consensus 8 iG~G~mG~~~A~~L~~~G~~V~~~~r~~~ 36 (341)
T PRK08229 8 LGAGSIGCYLGGRLAAAGADVTLIGRARI 36 (341)
T ss_pred ECCCHHHHHHHHHHHhcCCcEEEEecHHH
Confidence 37999999999999999999999999753
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.24 Score=35.76 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=34.0
Q ss_pred ccCc-cHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKM-NFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~-iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|. +|..+++.|.++|.+|++..|+. +++.+.+..+|+||.++
T Consensus 51 G~G~~~G~~~a~~L~~~g~~V~v~~r~~---------------------~~l~~~l~~aDiVIsat 95 (168)
T cd01080 51 GRSNIVGKPLAALLLNRNATVTVCHSKT---------------------KNLKEHTKQADIVIVAV 95 (168)
T ss_pred CCcHHHHHHHHHHHhhCCCEEEEEECCc---------------------hhHHHHHhhCCEEEEcC
Confidence 4675 58888888888888888887752 45667888999999883
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.16 Score=41.23 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=56.2
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhhc-CCceEEEEcCCCCHH-HHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKRNAMESF-GTYVESMAGDASNKK-FLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~~-~l~~~~~~~d~vi~~~ 73 (208)
.++|++.+-++..|.+++ -+|++.+|...+..++- +.+++.|..|+.|++ .+...++..|.+++..
T Consensus 8 lgsg~v~~p~~d~ls~~~dv~vtva~~~~~~~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~D~viSLl 76 (445)
T KOG0172|consen 8 LGSGFVSRPVADFLSRKKDVNVTVASRTLKDAEALVKGINIKAVSLDVADEELALRKEVKPLDLVISLL 76 (445)
T ss_pred ecCccccchHHHHHhhcCCceEEEehhhHHHHHHHhcCCCccceEEEccchHHHHHhhhcccceeeeec
Confidence 479999999999999875 78999999888776654 357899999999988 9999999999999763
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.25 Score=39.26 Aligned_cols=58 Identities=3% Similarity=-0.094 Sum_probs=39.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHh-cCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTAL-RGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~-~~~d~vi~~~~ 74 (208)
+.|.+|+.++..|.+.|++|++++|+....... ..++.. ..+.++ ++ .++|+||+|.+
T Consensus 43 G~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~-~~gv~~----~~~~~e---~~~~~aDvVilavp 101 (304)
T PLN02256 43 GFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAA-ELGVSF----FRDPDD---FCEEHPDVVLLCTS 101 (304)
T ss_pred eeCHHHHHHHHHHHhCCCEEEEEECccHHHHHH-HcCCee----eCCHHH---HhhCCCCEEEEecC
Confidence 699999999999999999999999886432111 123321 334333 33 36899998843
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.1 Score=44.05 Aligned_cols=65 Identities=2% Similarity=-0.172 Sum_probs=43.9
Q ss_pred cccCccHHHHHHHHHhCC--CcEEEEEcCchhhhhhcCCceEEEEcC------------CCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKR--TRIKALVKDKRNAMESFGTYVESMAGD------------ASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~~~~~~~v~~v~~D------------l~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|++|..++-.|.+.| |+|++++.++++...+......+..-+ +.-..++.++++++|++|.|
T Consensus 7 iG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~advi~I~ 85 (473)
T PLN02353 7 IGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADIVFVS 85 (473)
T ss_pred ECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCEEEEE
Confidence 479999999999999884 889999999888655432222211111 11122345578889999977
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.14 Score=40.21 Aligned_cols=64 Identities=5% Similarity=-0.088 Sum_probs=43.3
Q ss_pred cccCccHHHHHHHHHhCCC-cEEEEEcCchhhhhhc---CCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRT-RIKALVKDKRNAMESF---GTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|..|++++..|.+.|. +|+++.|+.++...+. .....+.. +...+++...+.++|+||+++
T Consensus 131 lGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~--~~~~~~~~~~~~~~DiVInaT 198 (282)
T TIGR01809 131 IGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITR--LEGDSGGLAIEKAAEVLVSTV 198 (282)
T ss_pred EcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCccee--ccchhhhhhcccCCCEEEECC
Confidence 4799999999999999995 7999999988754432 11111111 222234445667899999983
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=93.31 E-value=1 Score=36.73 Aligned_cols=84 Identities=19% Similarity=0.076 Sum_probs=54.9
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCc-------------------hhh------hhhcCC--ceEEEEcCCCCHHHHH
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDK-------------------RNA------MESFGT--YVESMAGDASNKKFLK 60 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~-------------------~~~------~~~~~~--~v~~v~~Dl~d~~~l~ 60 (208)
+-|-+|+++++.|...| -++++++++. .|. .....+ .++.+...++ .+...
T Consensus 35 G~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~i~-~~~~~ 113 (355)
T PRK05597 35 GAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRRLT-WSNAL 113 (355)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEeecC-HHHHH
Confidence 58999999999999999 4677776642 110 011223 3455555554 45566
Q ss_pred HHhcCCCEEEEcCCCc-----hhhhhhhcCCCeEEEece
Q 028525 61 TALRGVRSIICPSEGF-----ISNAGSLKGVQHVILLSQ 94 (208)
Q Consensus 61 ~~~~~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~Ss 94 (208)
+.++++|+||.|.+.. +.++|.+.+++ +|+.+.
T Consensus 114 ~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip-~v~~~~ 151 (355)
T PRK05597 114 DELRDADVILDGSDNFDTRHLASWAAARLGIP-HVWASI 151 (355)
T ss_pred HHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC-EEEEEE
Confidence 7889999999886543 34566777764 666554
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.89 Score=37.26 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=55.3
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCc-------------------hhh------hhhcCC--ceEEEEcCCCCHHHHH
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDK-------------------RNA------MESFGT--YVESMAGDASNKKFLK 60 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~-------------------~~~------~~~~~~--~v~~v~~Dl~d~~~l~ 60 (208)
+-|-+|++++..|...| .++++++++. .|. .....+ .++.+...++ .+.+.
T Consensus 48 G~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~-~~~~~ 126 (370)
T PRK05600 48 GAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLT-AENAV 126 (370)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeeecC-HHHHH
Confidence 58999999999999999 5788887651 110 001123 3455555554 55677
Q ss_pred HHhcCCCEEEEcCCCc-----hhhhhhhcCCCeEEEece
Q 028525 61 TALRGVRSIICPSEGF-----ISNAGSLKGVQHVILLSQ 94 (208)
Q Consensus 61 ~~~~~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~Ss 94 (208)
+.++++|+||.|.+.. +.+++.+.+++ +|+.+.
T Consensus 127 ~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP-~v~~~~ 164 (370)
T PRK05600 127 ELLNGVDLVLDGSDSFATKFLVADAAEITGTP-LVWGTV 164 (370)
T ss_pred HHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC-EEEEEE
Confidence 8899999999886543 34556666764 555543
|
|
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.27 Score=38.89 Aligned_cols=63 Identities=16% Similarity=0.047 Sum_probs=48.2
Q ss_pred hhc-cccCccHHHHHHHHHhCCCcEEEEEcCchh-hhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEE
Q 028525 5 KKM-KRKKMNFRMVILSLIVKRTRIKALVKDKRN-AMESFGTYVESMAGDASNKKFLKTALR--GVRSII 70 (208)
Q Consensus 5 ~~~-~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi 70 (208)
+.| .++|.+|+.++-++.+-|.+|++++|=... +.+. . -.-+..|+.|.+.+...++ ..|.+|
T Consensus 14 kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~APAmqV-A--hrs~Vi~MlD~~al~avv~rekPd~IV 80 (394)
T COG0027 14 KVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQV-A--HRSYVIDMLDGDALRAVVEREKPDYIV 80 (394)
T ss_pred EEEEecCCccchHHHHHHHhcCCEEEEecCcCCChhhhh-h--hheeeeeccCHHHHHHHHHhhCCCeee
Confidence 445 489999999999999999999999996543 2221 1 1334579999999999986 468887
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.27 Score=41.32 Aligned_cols=58 Identities=7% Similarity=-0.012 Sum_probs=42.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|.||+.+++.|...|.+|+++.+++.+.......+..++ + +.+++..+|+||.+++
T Consensus 261 GyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv--~------leEal~~ADVVI~tTG 318 (477)
T PLN02494 261 GYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL--T------LEDVVSEADIFVTTTG 318 (477)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec--c------HHHHHhhCCEEEECCC
Confidence 69999999999999999999999988866333222334432 2 3456778999998744
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.19 Score=41.25 Aligned_cols=58 Identities=10% Similarity=-0.064 Sum_probs=40.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.||+.+++.|..-|.+|++++|+..........++.. .+++.+++..+|+|+++.
T Consensus 206 G~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~sDvV~l~l 263 (386)
T PLN03139 206 GAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKF-------EEDLDAMLPKCDVVVINT 263 (386)
T ss_pred eecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCcee-------cCCHHHHHhhCCEEEEeC
Confidence 6999999999999999999999988753221111112221 224667888899999663
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.26 Score=38.10 Aligned_cols=59 Identities=7% Similarity=0.017 Sum_probs=38.8
Q ss_pred cccCccHHHHHHHHHhCCCc---EEEEEcCchhhhhhcCC--ceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTR---IKALVKDKRNAMESFGT--YVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~---V~~~~R~~~~~~~~~~~--~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|.+|+.+++.|++.|+. +.+..|++++..+.... ++... .+. .++++.+|+||++.
T Consensus 6 IG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~----~~~---~~~~~~aDvVilav 69 (258)
T PRK06476 6 IGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIA----KDN---QAVVDRSDVVFLAV 69 (258)
T ss_pred ECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEe----CCH---HHHHHhCCEEEEEe
Confidence 46999999999999998865 46677877664432211 22221 233 34456799999883
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.24 Score=39.80 Aligned_cols=58 Identities=9% Similarity=-0.077 Sum_probs=41.8
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-cCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-FGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|.+|.++++.|.+.|++|++..|+.++.... ...++.. . ++.++++.+|+|+++.+
T Consensus 24 G~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~-----~---s~~eaa~~ADVVvLaVP 82 (330)
T PRK05479 24 GYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEV-----L---TVAEAAKWADVIMILLP 82 (330)
T ss_pred eeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCee-----C---CHHHHHhcCCEEEEcCC
Confidence 699999999999999999999988875543221 1123332 1 34567888999998844
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.081 Score=41.64 Aligned_cols=30 Identities=0% Similarity=-0.137 Sum_probs=27.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN 37 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~ 37 (208)
.+.|.+|+.++..|+..|++|++++++++.
T Consensus 9 iGaG~mG~~iA~~la~~G~~V~l~d~~~~~ 38 (287)
T PRK08293 9 AGAGVLGSQIAFQTAFHGFDVTIYDISDEA 38 (287)
T ss_pred ECCCHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 479999999999999999999999998764
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.2 Score=39.17 Aligned_cols=61 Identities=7% Similarity=-0.074 Sum_probs=37.8
Q ss_pred cccCccHHHHHHHHHhC--CCcEEEE-EcCchhhhhhcCC-ceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVK--RTRIKAL-VKDKRNAMESFGT-YVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~--g~~V~~~-~R~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.+++.|.+. ++++.++ +|++++..+.... +... -+++.++ ++.++|+|+.|++
T Consensus 12 IG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~ee---ll~~~D~Vvi~tp 76 (271)
T PRK13302 12 AGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQ---LATHADIVVEAAP 76 (271)
T ss_pred ECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHH---HhcCCCEEEECCC
Confidence 37999999999999873 6888754 5665554322111 1110 1234444 4567999998844
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.26 Score=39.03 Aligned_cols=42 Identities=7% Similarity=0.046 Sum_probs=33.6
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+|.+|+.++..|+++|++|+++.|+.. ++.++.+.+|+||.+
T Consensus 168 s~ivG~PmA~~L~~~gatVtv~~~~t~---------------------~l~e~~~~ADIVIsa 209 (301)
T PRK14194 168 SNIVGKPMAALLLQAHCSVTVVHSRST---------------------DAKALCRQADIVVAA 209 (301)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCCCC---------------------CHHHHHhcCCEEEEe
Confidence 569999999999999999999965532 345667778888877
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.69 Score=37.25 Aligned_cols=84 Identities=10% Similarity=-0.005 Sum_probs=52.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc-h---hhhhhhc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF-I---SNAGSLK 84 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~-~---~~a~~~~ 84 (208)
+-|-+|...++.+...|.+|++++|+++|......-+.+.+.... |++.+...-+-+|+++.+.+.. + ...++..
T Consensus 174 G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~~~d~ii~tv~~~~~~~~l~~l~~~ 252 (339)
T COG1064 174 GAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKEIADAIIDTVGPATLEPSLKALRRG 252 (339)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHhhCcEEEECCChhhHHHHHHHHhcC
Confidence 367789999988888999999999999985322222233333222 5555444444489999874433 2 2334444
Q ss_pred CCCeEEEecee
Q 028525 85 GVQHVILLSQL 95 (208)
Q Consensus 85 gv~~~v~~Ss~ 95 (208)
| +++.++-.
T Consensus 253 G--~~v~vG~~ 261 (339)
T COG1064 253 G--TLVLVGLP 261 (339)
T ss_pred C--EEEEECCC
Confidence 4 67777643
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.074 Score=41.86 Aligned_cols=61 Identities=13% Similarity=0.047 Sum_probs=42.3
Q ss_pred cccCccHHHHHHHHHhCCC-cEEEEEcCchhhhhhc---C---CceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRT-RIKALVKDKRNAMESF---G---TYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~~~---~---~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|..|++++..|.+.|. +|+++.|+..+...+. . ..+.+. .. +++.+.+.++|+||+++
T Consensus 133 lGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~--~~---~~~~~~~~~aDiVInaT 200 (284)
T PRK12549 133 LGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARAT--AG---SDLAAALAAADGLVHAT 200 (284)
T ss_pred ECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEE--ec---cchHhhhCCCCEEEECC
Confidence 4699999999999999996 7999999987743321 1 112222 12 22345677899999883
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.29 Score=41.31 Aligned_cols=58 Identities=5% Similarity=-0.084 Sum_probs=42.1
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc---CCCEEEEc
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR---GVRSIICP 72 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~---~~d~vi~~ 72 (208)
||..|.+|++++..+|++|+.+.-+.+ .. .+.+++++.. +..+++.+++. .+|++|++
T Consensus 281 SGkmG~alA~aa~~~GA~VtlI~Gp~~-~~--~p~~v~~i~V--~ta~eM~~av~~~~~~Di~I~a 341 (475)
T PRK13982 281 SGKQGFAIAAAAAAAGAEVTLISGPVD-LA--DPQGVKVIHV--ESARQMLAAVEAALPADIAIFA 341 (475)
T ss_pred chHHHHHHHHHHHHCCCcEEEEeCCcC-CC--CCCCceEEEe--cCHHHHHHHHHhhCCCCEEEEe
Confidence 999999999999999999999974432 21 2346776644 45556666653 37999976
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.2 Score=39.13 Aligned_cols=59 Identities=5% Similarity=-0.049 Sum_probs=40.2
Q ss_pred cccCccHHHHHHHHHhCC----CcEEEEEcCchhhhhhcC--CceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKR----TRIKALVKDKRNAMESFG--TYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g----~~V~~~~R~~~~~~~~~~--~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|.+|+.+++.|++.| ++|.+++|++++...... .++.+. .+. .+++.++|+||++.
T Consensus 6 IG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~----~~~---~~~~~~aDiVilav 70 (273)
T PRK07680 6 IGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVA----KTI---EEVISQSDLIFICV 70 (273)
T ss_pred ECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEE----CCH---HHHHHhCCEEEEec
Confidence 368999999999999988 379999998766433221 123322 122 23456789999873
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.66 E-value=1.5 Score=33.39 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=56.7
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCc--------------------hhh------hhhcCC--ceEEEEcCCCCHHHH
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDK--------------------RNA------MESFGT--YVESMAGDASNKKFL 59 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~--------------------~~~------~~~~~~--~v~~v~~Dl~d~~~l 59 (208)
+-|-+|+++++.|...| .++++++.+. .+. .....+ .++.+...+ +.+.+
T Consensus 34 G~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~-~~~~~ 112 (231)
T PRK08328 34 GVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRL-SEENI 112 (231)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEeccC-CHHHH
Confidence 58999999999999999 4677776431 010 011122 344555555 45667
Q ss_pred HHHhcCCCEEEEcCCCc-----hhhhhhhcCCCeEEEeceeeecc
Q 028525 60 KTALRGVRSIICPSEGF-----ISNAGSLKGVQHVILLSQLSVYR 99 (208)
Q Consensus 60 ~~~~~~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~Ss~~~~~ 99 (208)
.+.++++|+||.|.+.. +.+.+.+.+++ +|+.+..+.++
T Consensus 113 ~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip-~i~g~~~g~~G 156 (231)
T PRK08328 113 DEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIP-LVHGAVEGTYG 156 (231)
T ss_pred HHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCC-EEEEeeccCEE
Confidence 77889999999884432 34557777764 66666554443
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=92.65 E-value=1.4 Score=32.68 Aligned_cols=88 Identities=11% Similarity=0.052 Sum_probs=54.4
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCch-------------------hh------hhhcCC--ceEEEEcCCCCHHHHH
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKR-------------------NA------MESFGT--YVESMAGDASNKKFLK 60 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~-------------------~~------~~~~~~--~v~~v~~Dl~d~~~l~ 60 (208)
+-|-+|+++++.|...| .++++++.+.- |. .+...+ .++.+...+++ ...
T Consensus 28 G~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~~~--~~~ 105 (197)
T cd01492 28 GLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDISE--KPE 105 (197)
T ss_pred cCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCccc--cHH
Confidence 57779999999999999 46777765311 10 111223 34455555542 234
Q ss_pred HHhcCCCEEEEcCCCc-----hhhhhhhcCCCeEEEeceeeecc
Q 028525 61 TALRGVRSIICPSEGF-----ISNAGSLKGVQHVILLSQLSVYR 99 (208)
Q Consensus 61 ~~~~~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~Ss~~~~~ 99 (208)
+.++++|+||.+.+.. +.+.+.+.++ .+++.++.+.++
T Consensus 106 ~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~i-p~i~~~~~G~~G 148 (197)
T cd01492 106 EFFSQFDVVVATELSRAELVKINELCRKLGV-KFYATGVHGLFG 148 (197)
T ss_pred HHHhCCCEEEECCCCHHHHHHHHHHHHHcCC-CEEEEEecCCEE
Confidence 5678999999874432 3456777787 466776655443
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=92.60 E-value=1.7 Score=33.47 Aligned_cols=86 Identities=7% Similarity=-0.008 Sum_probs=54.3
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCc-------------------hhh------hhhcCC--ceEEEEcCCCCHHHHH
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDK-------------------RNA------MESFGT--YVESMAGDASNKKFLK 60 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~-------------------~~~------~~~~~~--~v~~v~~Dl~d~~~l~ 60 (208)
+-|-+|+++++.|...| .++++++.+. .|. .....+ .++.+...++ .+.+.
T Consensus 39 G~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~-~~~~~ 117 (245)
T PRK05690 39 GLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLD-DDELA 117 (245)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCC-HHHHH
Confidence 57999999999999999 4677776531 110 011123 3455555554 45667
Q ss_pred HHhcCCCEEEEcCCCc-----hhhhhhhcCCCeEEEeceee
Q 028525 61 TALRGVRSIICPSEGF-----ISNAGSLKGVQHVILLSQLS 96 (208)
Q Consensus 61 ~~~~~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~Ss~~ 96 (208)
+.++++|+||.|.+.. +.+.+.+.++ .+|+.++.+
T Consensus 118 ~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~i-p~v~~~~~g 157 (245)
T PRK05690 118 ALIAGHDLVLDCTDNVATRNQLNRACFAAKK-PLVSGAAIR 157 (245)
T ss_pred HHHhcCCEEEecCCCHHHHHHHHHHHHHhCC-EEEEeeecc
Confidence 7889999999885533 3455666775 466654433
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.71 Score=38.83 Aligned_cols=64 Identities=6% Similarity=-0.086 Sum_probs=46.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchh-hh----hhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRN-AM----ESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~----~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+-|..|...++.|.++|++|.+.+++... .. .+...++++..+.-.+.+.+...+.+.|.||..
T Consensus 7 G~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 7 GLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 57889999999999999999999976543 11 123346777766544555555667789999875
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.58 Score=40.69 Aligned_cols=62 Identities=10% Similarity=0.054 Sum_probs=48.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|++|+.++..+.+.|++|++++.++........+ ..+.+++.|.+.+.+..+.+|++...
T Consensus 29 GgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD--~~~v~~~~D~~~l~~~a~~~dvIt~e 90 (577)
T PLN02948 29 GGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAA--RHVVGSFDDRAAVREFAKRCDVLTVE 90 (577)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCc--eeeeCCCCCHHHHHHHHHHCCEEEEe
Confidence 699999999999999999999998876532211222 34568999999998888889988654
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.41 Score=39.06 Aligned_cols=82 Identities=16% Similarity=0.041 Sum_probs=46.0
Q ss_pred ccccCccHHHHHHHHHhC-CCc---EEEEEcCchh--hhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----
Q 028525 7 MKRKKMNFRMVILSLIVK-RTR---IKALVKDKRN--AMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF---- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~-g~~---V~~~~R~~~~--~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~---- 76 (208)
.+.||.+|+.+++.|++. .+. ++.++...+. .....+. .....++.|++. +.++|++|+|.++.
T Consensus 7 VGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~--~~~v~~~~~~~~----~~~~Divf~a~~~~~s~~ 80 (369)
T PRK06598 7 VGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK--EGTLQDAFDIDA----LKKLDIIITCQGGDYTNE 80 (369)
T ss_pred EeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC--cceEEecCChhH----hcCCCEEEECCCHHHHHH
Confidence 467999999999966654 565 6665543221 1111121 223334454443 46899999985533
Q ss_pred hhhhhhhcCCC-eEEEece
Q 028525 77 ISNAGSLKGVQ-HVILLSQ 94 (208)
Q Consensus 77 ~~~a~~~~gv~-~~v~~Ss 94 (208)
....+.++|++ .+|-.||
T Consensus 81 ~~~~~~~aG~~~~VID~Ss 99 (369)
T PRK06598 81 VYPKLRAAGWQGYWIDAAS 99 (369)
T ss_pred HHHHHHhCCCCeEEEECCh
Confidence 23334456764 3444454
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.12 Score=37.20 Aligned_cols=65 Identities=5% Similarity=-0.216 Sum_probs=43.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcC-------------------CCCHHHHHHHhcCCCE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGD-------------------ASNKKFLKTALRGVRS 68 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~D-------------------l~d~~~l~~~~~~~d~ 68 (208)
.+.|.+|...++.|...|++|+++...+....+........+..+ ......+.+.+..+|.
T Consensus 26 ~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~d~ 105 (168)
T PF01262_consen 26 TGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFIAPADI 105 (168)
T ss_dssp ESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHHHH-SE
T ss_pred ECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHHhhCcE
Confidence 369999999999999999999999988766433322223333333 1224566677778899
Q ss_pred EEEc
Q 028525 69 IICP 72 (208)
Q Consensus 69 vi~~ 72 (208)
||.+
T Consensus 106 vI~~ 109 (168)
T PF01262_consen 106 VIGN 109 (168)
T ss_dssp EEEH
T ss_pred Eeee
Confidence 9965
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.31 Score=39.12 Aligned_cols=56 Identities=9% Similarity=-0.025 Sum_probs=38.4
Q ss_pred ccCccHHHHHHHHHhCC-------CcEEEEEcCc--hhhhhhcCCceEEEEcCCCCH-----------HHHHHHhcCCCE
Q 028525 9 RKKMNFRMVILSLIVKR-------TRIKALVKDK--RNAMESFGTYVESMAGDASNK-----------KFLKTALRGVRS 68 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-------~~V~~~~R~~--~~~~~~~~~~v~~v~~Dl~d~-----------~~l~~~~~~~d~ 68 (208)
.+|.+|+.++..|..++ ++++.++++. +.. +-...|+.|. ....++++++|+
T Consensus 8 AaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~--------~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDi 79 (323)
T cd00704 8 AAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKAL--------EGVVMELQDCAFPLLKGVVITTDPEEAFKDVDV 79 (323)
T ss_pred CCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCcc--------ceeeeehhhhcccccCCcEEecChHHHhCCCCE
Confidence 46999999999988765 2588888876 321 2222233332 345688999999
Q ss_pred EEEc
Q 028525 69 IICP 72 (208)
Q Consensus 69 vi~~ 72 (208)
||++
T Consensus 80 VVit 83 (323)
T cd00704 80 AILV 83 (323)
T ss_pred EEEe
Confidence 9977
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.43 Score=39.63 Aligned_cols=58 Identities=14% Similarity=-0.032 Sum_probs=42.8
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+-|.||+.++..+...|.+|+++.+++.+.......++..+. . .+++.++|+||.+++
T Consensus 209 G~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~-----~---~e~v~~aDVVI~atG 266 (413)
T cd00401 209 GYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMT-----M---EEAVKEGDIFVTTTG 266 (413)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEcc-----H---HHHHcCCCEEEECCC
Confidence 689999999999999999999998887764333333444331 1 356678999998854
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.18 Score=41.49 Aligned_cols=63 Identities=10% Similarity=-0.136 Sum_probs=39.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEE------------EEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVES------------MAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~------------v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|++|..++..| +.||+|+++++++++...... +... ..+.++...+..++..++|+||.|
T Consensus 6 IGlGyvGl~~A~~l-A~G~~VigvD~d~~kv~~l~~-g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~ 80 (388)
T PRK15057 6 SGTGYVGLSNGLLI-AQNHEVVALDILPSRVAMLND-RISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA 80 (388)
T ss_pred ECCCHHHHHHHHHH-HhCCcEEEEECCHHHHHHHHc-CCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence 47999999999554 469999999999888544322 1100 011121112234456889999977
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.29 Score=38.70 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=33.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEE-cCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALV-KDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~-R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
++|.+|+.++..|+++|++|++.. |+. ++.++++.+|+||.+
T Consensus 166 rs~~mG~PmA~~L~~~g~tVtv~~~rT~----------------------~l~e~~~~ADIVIsa 208 (296)
T PRK14188 166 RSNLVGKPMAQLLLAANATVTIAHSRTR----------------------DLPAVCRRADILVAA 208 (296)
T ss_pred CCcchHHHHHHHHHhCCCEEEEECCCCC----------------------CHHHHHhcCCEEEEe
Confidence 489999999999999999999984 543 135667788988877
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.47 Score=38.43 Aligned_cols=56 Identities=5% Similarity=-0.076 Sum_probs=38.2
Q ss_pred CccHHHHHHHHHhCCCcEEEEEcCchhh-----hhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 11 KMNFRMVILSLIVKRTRIKALVKDKRNA-----MESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 11 G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-----~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
=+-|..++..|.+.||+|++++|++++. ......++.+.. |. .++++++|+||.+.
T Consensus 29 ~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~as----d~---~eaa~~ADvVIlaV 89 (342)
T PRK12557 29 PYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVS----DD---AEAAKHGEIHILFT 89 (342)
T ss_pred CcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeC----CH---HHHHhCCCEEEEEC
Confidence 3569999999999999999999987632 112223443321 22 34667899999873
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.39 Score=39.74 Aligned_cols=58 Identities=12% Similarity=-0.035 Sum_probs=42.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+-|.||+.+++.|...|.+|+++.+++.+..+....+..++ + +.++++++|+||.+++
T Consensus 202 G~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~--~------leeal~~aDVVItaTG 259 (406)
T TIGR00936 202 GYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM--T------MEEAAKIGDIFITATG 259 (406)
T ss_pred CCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC--C------HHHHHhcCCEEEECCC
Confidence 68999999999999999999999988876433222344332 2 2346788999998754
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.17 Score=40.26 Aligned_cols=60 Identities=7% Similarity=-0.070 Sum_probs=41.6
Q ss_pred cccCccHHHHHHHHHh-CC-CcEEEEEcCchhhhhhc---CC-ceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIV-KR-TRIKALVKDKRNAMESF---GT-YVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~-~g-~~V~~~~R~~~~~~~~~---~~-~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.++|..|+..++.+.. ++ .+|.++.|++++...+. .. ++.+. . +++.+++.++|+||.|+
T Consensus 131 iGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~---~---~~~~~av~~aDiVitaT 196 (304)
T PRK07340 131 IGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE---P---LDGEAIPEAVDLVVTAT 196 (304)
T ss_pred ECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE---E---CCHHHHhhcCCEEEEcc
Confidence 3699999999999975 55 57999999987743321 11 22222 2 33456778999999883
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.32 Score=39.04 Aligned_cols=57 Identities=11% Similarity=-0.062 Sum_probs=37.4
Q ss_pred cCccHHHHHHHHHhCC-------CcEEEEEcCchhhhhhcCCceEEEEcCCCCHH-----------HHHHHhcCCCEEEE
Q 028525 10 KKMNFRMVILSLIVKR-------TRIKALVKDKRNAMESFGTYVESMAGDASNKK-----------FLKTALRGVRSIIC 71 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g-------~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~-----------~l~~~~~~~d~vi~ 71 (208)
.|.+|+.++..|..++ ++++.+++++.... .+-+..|+.|.. ...++++++|+||+
T Consensus 8 aG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~------a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVVi 81 (324)
T TIGR01758 8 AGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKV------LEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAIL 81 (324)
T ss_pred CcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccc------cceeEeehhcccchhcCceeccCChHHHhCCCCEEEE
Confidence 5999999999998754 26889988654310 111223333322 34678999999997
Q ss_pred c
Q 028525 72 P 72 (208)
Q Consensus 72 ~ 72 (208)
+
T Consensus 82 t 82 (324)
T TIGR01758 82 V 82 (324)
T ss_pred c
Confidence 7
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.51 Score=38.21 Aligned_cols=82 Identities=11% Similarity=0.053 Sum_probs=45.8
Q ss_pred ccccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhhcCC-----------c-e-EEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 7 MKRKKMNFRMVILSLIVKR-TRIKALVKDKRNAMESFGT-----------Y-V-ESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~~~~-----------~-v-~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.||++|++|++.|.++. .++..+.++.+........ + + +...-++ +++ .+.++|+||.+
T Consensus 6 vGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~DvVf~a 80 (341)
T TIGR00978 6 LGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEP-EPV----ASKDVDIVFSA 80 (341)
T ss_pred ECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeC-CHH----HhccCCEEEEe
Confidence 3569999999999888876 6888886544321111100 0 1 1111111 222 35789999988
Q ss_pred CCCc----hhhhhhhcCCCeEEEece
Q 028525 73 SEGF----ISNAGSLKGVQHVILLSQ 94 (208)
Q Consensus 73 ~~~~----~~~a~~~~gv~~~v~~Ss 94 (208)
.+.. ....+...|++. |..|+
T Consensus 81 ~p~~~s~~~~~~~~~~G~~V-IDlsg 105 (341)
T TIGR00978 81 LPSEVAEEVEPKLAEAGKPV-FSNAS 105 (341)
T ss_pred CCHHHHHHHHHHHHHCCCEE-EECCh
Confidence 5432 234455667754 44443
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.28 Score=38.96 Aligned_cols=52 Identities=13% Similarity=-0.052 Sum_probs=38.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|..-|.+|++++|+... .++... ..++.++++.+|+|+++
T Consensus 129 G~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~------~~~l~ell~~aDiv~~~ 180 (303)
T PRK06436 129 GYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSI------YMEPEDIMKKSDFVLIS 180 (303)
T ss_pred CcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccc------cCCHHHHHhhCCEEEEC
Confidence 69999999999887779999999987432 112111 12466788899999976
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=91.95 E-value=2.1 Score=31.05 Aligned_cols=83 Identities=8% Similarity=0.004 Sum_probs=52.3
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCc---h---------------hh------hhhcCC--ceEEEEcCCCCHHHHHH
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDK---R---------------NA------MESFGT--YVESMAGDASNKKFLKT 61 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~---~---------------~~------~~~~~~--~v~~v~~Dl~d~~~l~~ 61 (208)
+-|-+|+++++.|...|. ++++++.+. + |. .....+ .++.+...++ .+.+.+
T Consensus 6 G~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~-~~~~~~ 84 (174)
T cd01487 6 GAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKID-ENNLEG 84 (174)
T ss_pred CcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC-hhhHHH
Confidence 578999999999999996 588888764 1 10 011122 3444555554 356677
Q ss_pred HhcCCCEEEEcCCCc-----hhhhhhhc-CCCeEEEec
Q 028525 62 ALRGVRSIICPSEGF-----ISNAGSLK-GVQHVILLS 93 (208)
Q Consensus 62 ~~~~~d~vi~~~~~~-----~~~a~~~~-gv~~~v~~S 93 (208)
.++++|.||.|.+.. +.+.+.+. ++ .+|+.+
T Consensus 85 ~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~i-p~i~~~ 121 (174)
T cd01487 85 LFGDCDIVVEAFDNAETKAMLAESLLGNKNK-PVVCAS 121 (174)
T ss_pred HhcCCCEEEECCCCHHHHHHHHHHHHHHCCC-CEEEEe
Confidence 889999999885443 23344444 65 455554
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=91.92 E-value=1.5 Score=38.10 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=50.3
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEE--cCchh---------hhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALV--KDKRN---------AMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~--R~~~~---------~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|..|++++..|+..| .++++++ +-.+. ....+++++.+...|.+..+++.+.+++.|.|++.++
T Consensus 136 G~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsD 213 (637)
T TIGR03693 136 GSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPADWVLYVSD 213 (637)
T ss_pred ecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCCcEEEEECC
Confidence 69999999999999999 5676763 33331 1122456777777788889999999999999998854
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.91 Score=35.77 Aligned_cols=82 Identities=7% Similarity=-0.023 Sum_probs=48.1
Q ss_pred hccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----hhhhh
Q 028525 6 KMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF----ISNAG 81 (208)
Q Consensus 6 ~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~----~~~a~ 81 (208)
+|+.||..|+.+.+.|+.-|++++..+.......+.. ++..+ .+.+++.+.. ++|.++.+.+.. ..+.+
T Consensus 11 ~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~--G~~~y----~sv~dlp~~~-~~Dlavi~vpa~~v~~~l~e~ 83 (286)
T TIGR01019 11 VQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVL--GLPVF----DSVKEAVEET-GANASVIFVPAPFAADAIFEA 83 (286)
T ss_pred EecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceec--Ceecc----CCHHHHhhcc-CCCEEEEecCHHHHHHHHHHH
Confidence 4678999999999999999988666553331111111 22221 1233333222 378888774432 23345
Q ss_pred hhcCCCeEEEece
Q 028525 82 SLKGVQHVILLSQ 94 (208)
Q Consensus 82 ~~~gv~~~v~~Ss 94 (208)
.+.|++.+|.+|+
T Consensus 84 ~~~Gvk~avIis~ 96 (286)
T TIGR01019 84 IDAGIELIVCITE 96 (286)
T ss_pred HHCCCCEEEEECC
Confidence 5678888777764
|
ATP citrate lyases appear to form an outgroup. |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.32 Score=38.00 Aligned_cols=60 Identities=7% Similarity=-0.092 Sum_probs=38.7
Q ss_pred cccCccHHHHHHHHHhCCC--cEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRT--RIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~--~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..|.+.|+ +|++++|++++.......++.. . ..+.+ ++. .+|+||+|.+
T Consensus 6 IG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~-~--~~~~~---~~~-~aD~Vilavp 67 (275)
T PRK08507 6 IGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVD-E--IVSFE---ELK-KCDVIFLAIP 67 (275)
T ss_pred EccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCc-c--cCCHH---HHh-cCCEEEEeCc
Confidence 3689999999999999986 6888888876643322222210 0 12322 333 4999998843
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.68 Score=31.34 Aligned_cols=83 Identities=13% Similarity=0.016 Sum_probs=50.5
Q ss_pred cHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCC---HHHHHHHhc--CCCEEEEcCC-Cch-hhhhhhcC
Q 028525 13 NFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASN---KKFLKTALR--GVRSIICPSE-GFI-SNAGSLKG 85 (208)
Q Consensus 13 iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d---~~~l~~~~~--~~d~vi~~~~-~~~-~~a~~~~g 85 (208)
||...+.-+...|.+|++.++++++......-+...+ .|..+ .+.+.+... ++|+||.|.+ +.. ..+.+...
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~-~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~ 80 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHV-IDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLLR 80 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEE-EETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHEE
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccccc-ccccccccccccccccccccceEEEEecCcHHHHHHHHHHhc
Confidence 6888998888899999999999887433322233333 23322 556666665 4899998855 332 22222211
Q ss_pred -CCeEEEeceee
Q 028525 86 -VQHVILLSQLS 96 (208)
Q Consensus 86 -v~~~v~~Ss~~ 96 (208)
-.+++.++...
T Consensus 81 ~~G~~v~vg~~~ 92 (130)
T PF00107_consen 81 PGGRIVVVGVYG 92 (130)
T ss_dssp EEEEEEEESSTS
T ss_pred cCCEEEEEEccC
Confidence 13677776544
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.39 Score=37.46 Aligned_cols=60 Identities=22% Similarity=0.106 Sum_probs=39.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc---CCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF---GTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.+|+.++..|++.|++|+++.|+.++..+.. ...-.....++.+ ..+.++|+||+++
T Consensus 124 GaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~-----~~~~~~DivInat 186 (270)
T TIGR00507 124 GAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDE-----LPLHRVDLIINAT 186 (270)
T ss_pred cCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhh-----hcccCccEEEECC
Confidence 6899999999999999999999999977643321 1100111122211 1235689999883
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.62 Score=37.07 Aligned_cols=58 Identities=9% Similarity=0.021 Sum_probs=40.4
Q ss_pred cccCccHHHHHHHHHhCC--CcEEEEEcCchhhhhh---c-------CCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKR--TRIKALVKDKRNAMES---F-------GTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~~~---~-------~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|.+|+.++..|+.+| ++|.+++|++++.... + ...+.+.. .+. +.+.++|+||++
T Consensus 6 IGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~---~~~----~~l~~aDIVIit 75 (306)
T cd05291 6 IGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA---GDY----SDCKDADIVVIT 75 (306)
T ss_pred ECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc---CCH----HHhCCCCEEEEc
Confidence 468999999999999998 7899999987763211 1 11222222 232 346899999987
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.2 Score=40.23 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=42.9
Q ss_pred cccCccHHHHHHHHHh-CC-CcEEEEEcCchhhhhhc---CC--ceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIV-KR-TRIKALVKDKRNAMESF---GT--YVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~-~g-~~V~~~~R~~~~~~~~~---~~--~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.++|..|+..++.|.. ++ .+|+++.|++++..++. .. ++++.. . +++.+++.++|+|++|++
T Consensus 135 iGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~--~---~~~~~av~~aDiVvtaT~ 203 (326)
T TIGR02992 135 FGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTA--A---TDPRAAMSGADIIVTTTP 203 (326)
T ss_pred ECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEE--e---CCHHHHhccCCEEEEecC
Confidence 4799999999999974 66 57999999988744321 11 233322 2 334567889999998843
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.67 E-value=1.6 Score=34.37 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=55.4
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCc-------------------hhh------hhhcCC--ceEEEEcCCCCHHHHH
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDK-------------------RNA------MESFGT--YVESMAGDASNKKFLK 60 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~-------------------~~~------~~~~~~--~v~~v~~Dl~d~~~l~ 60 (208)
+-|-+|+.++..|...| -++++++.+. .|. ....++ .++.+...++ ++.+.
T Consensus 34 G~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~-~~n~~ 112 (287)
T PRK08223 34 GLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIG-KENAD 112 (287)
T ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccC-ccCHH
Confidence 58999999999999999 4677776531 010 111233 3455555554 45567
Q ss_pred HHhcCCCEEEEcCCCc-------hhhhhhhcCCCeEEEeceee
Q 028525 61 TALRGVRSIICPSEGF-------ISNAGSLKGVQHVILLSQLS 96 (208)
Q Consensus 61 ~~~~~~d~vi~~~~~~-------~~~a~~~~gv~~~v~~Ss~~ 96 (208)
+.++++|.||.+.+.. +.++|.+.+++ +|+.+..+
T Consensus 113 ~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP-~V~~~~~g 154 (287)
T PRK08223 113 AFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIP-ALTAAPLG 154 (287)
T ss_pred HHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCC-EEEEeccC
Confidence 7889999999875542 34567778864 66665443
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=91.64 E-value=4.2 Score=31.80 Aligned_cols=83 Identities=10% Similarity=-0.001 Sum_probs=51.4
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCch-------------------hh---h---hhcCCc--eEEEEcCCCCHHHHH
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKR-------------------NA---M---ESFGTY--VESMAGDASNKKFLK 60 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~-------------------~~---~---~~~~~~--v~~v~~Dl~d~~~l~ 60 (208)
+-|-+|+++++.|...| -++++++.+.- |. . ....+. ++.+. +..+++.+.
T Consensus 37 G~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~-~~i~~e~~~ 115 (268)
T PRK15116 37 GIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD-DFITPDNVA 115 (268)
T ss_pred CcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe-cccChhhHH
Confidence 68999999999999999 67888875410 00 0 011233 33332 333466666
Q ss_pred HHhc-CCCEEEEcCCCc-----hhhhhhhcCCCeEEEec
Q 028525 61 TALR-GVRSIICPSEGF-----ISNAGSLKGVQHVILLS 93 (208)
Q Consensus 61 ~~~~-~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~S 93 (208)
+.+. ++|.||.|.+.. +.+.+.+.+++ ||.+.
T Consensus 116 ~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip-~I~~g 153 (268)
T PRK15116 116 EYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIP-LVTTG 153 (268)
T ss_pred HHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCC-EEEEC
Confidence 6774 699999885432 44566777764 44443
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.36 Score=39.50 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=33.6
Q ss_pred cCccHHHHHHHHHhC-CCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 10 KKMNFRMVILSLIVK-RTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~-g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+|.+|+.+++.|.+. +++|++++|.... ..+ ..+.+.++|.||+|.|
T Consensus 13 ~GliGgslA~alk~~~~~~V~g~D~~d~~---------------~~~---~~~~v~~aDlVilavP 60 (370)
T PRK08818 13 AGAYGRWLARFLRTRMQLEVIGHDPADPG---------------SLD---PATLLQRADVLIFSAP 60 (370)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCccc---------------cCC---HHHHhcCCCEEEEeCC
Confidence 599999999999875 8899999874110 112 2345778888887744
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.59 Score=31.90 Aligned_cols=69 Identities=19% Similarity=0.104 Sum_probs=41.7
Q ss_pred HHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc-CC-Cc---hhhhhhhcCCCeEE
Q 028525 16 MVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP-SE-GF---ISNAGSLKGVQHVI 90 (208)
Q Consensus 16 ~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~~-~~---~~~a~~~~gv~~~v 90 (208)
.++..|.++|.+|++.+-++.++. .++.++.-|+.+|+ .+..+++|.+++. .+ .. +.+.+++.+..-+|
T Consensus 27 ~vA~~L~~~G~dV~~tDi~~~~a~----~g~~~v~DDif~P~--l~iY~~a~lIYSiRPP~El~~~il~lA~~v~adlii 100 (127)
T PF03686_consen 27 EVAKKLKERGFDVIATDINPRKAP----EGVNFVVDDIFNPN--LEIYEGADLIYSIRPPPELQPPILELAKKVGADLII 100 (127)
T ss_dssp HHHHHHHHHS-EEEEE-SS-S--------STTEE---SSS----HHHHTTEEEEEEES--TTSHHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHcCCcEEEEECcccccc----cCcceeeecccCCC--HHHhcCCcEEEEeCCChHHhHHHHHHHHHhCCCEEE
Confidence 577888899999999988776433 46899999999988 4678899999977 33 22 45667777775443
|
; PDB: 2K4M_A. |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.34 E-value=1.9 Score=38.59 Aligned_cols=83 Identities=11% Similarity=0.189 Sum_probs=55.6
Q ss_pred ccCccHHHHHHHHHhCCC--cEEEEEcCc------------------hhh------hhhcCC--ceEEEEcCCCCHHHHH
Q 028525 9 RKKMNFRMVILSLIVKRT--RIKALVKDK------------------RNA------MESFGT--YVESMAGDASNKKFLK 60 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~--~V~~~~R~~------------------~~~------~~~~~~--~v~~v~~Dl~d~~~l~ 60 (208)
+-| +|++++..|...|- ++++++.+. .|. ....++ .|+.+...++ ++.+.
T Consensus 114 G~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~-~~n~~ 191 (722)
T PRK07877 114 GLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLT-EDNVD 191 (722)
T ss_pred Eec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCC-HHHHH
Confidence 358 99999999999983 788876541 110 011223 4566666665 78888
Q ss_pred HHhcCCCEEEEcCCCc-----hhhhhhhcCCCeEEEece
Q 028525 61 TALRGVRSIICPSEGF-----ISNAGSLKGVQHVILLSQ 94 (208)
Q Consensus 61 ~~~~~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~Ss 94 (208)
+.+.++|+||.|.+.. +.++|.+.++. +|+.++
T Consensus 192 ~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP-~i~~~~ 229 (722)
T PRK07877 192 AFLDGLDVVVEECDSLDVKVLLREAARARRIP-VLMATS 229 (722)
T ss_pred HHhcCCCEEEECCCCHHHHHHHHHHHHHcCCC-EEEEcC
Confidence 8999999999886654 34567777774 455553
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.63 Score=32.51 Aligned_cols=57 Identities=12% Similarity=0.066 Sum_probs=38.4
Q ss_pred ccCccHHHHHHHHHhCC--CcEEEEEcCchhhh----hh------cCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR--TRIKALVKDKRNAM----ES------FGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~----~~------~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+|.+|++++..|...+ .++..+++++.++. ++ ....+.+.. .+. ++++++|+||.+
T Consensus 8 a~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~----~~~~~aDivvit 76 (141)
T PF00056_consen 8 AAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GDY----EALKDADIVVIT 76 (141)
T ss_dssp TTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SSG----GGGTTESEEEET
T ss_pred CCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---ccc----cccccccEEEEe
Confidence 35999999999999886 68999999865421 11 111233333 232 357899999977
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.23 Score=38.88 Aligned_cols=60 Identities=13% Similarity=0.019 Sum_probs=39.4
Q ss_pred cccCccHHHHHHHHHhCC----CcEEEEEcCchh-hhhhcC--CceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKR----TRIKALVKDKRN-AMESFG--TYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g----~~V~~~~R~~~~-~~~~~~--~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.+++.|.+.| ++|++++|+... ...... ..+.+ . .| ..++++++|+||+|.+
T Consensus 7 IG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~-~---~~---~~e~~~~aDvVilavp 73 (277)
T PRK06928 7 IGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVEL-A---DN---EAEIFTKCDHSFICVP 73 (277)
T ss_pred ECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEE-e---CC---HHHHHhhCCEEEEecC
Confidence 469999999999999988 799999987543 222111 11221 1 22 2345678999998833
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.65 Score=37.11 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=41.2
Q ss_pred cccCccHHHHHHHHHh-CC-CcEEEEEcCchhhhhhcCC----ceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIV-KR-TRIKALVKDKRNAMESFGT----YVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~-~g-~~V~~~~R~~~~~~~~~~~----~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.++|..|+..++.++. ++ .+|+++.|++++..++... ++.+.. .++..+++.++|+|+++++
T Consensus 131 iG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~-----~~~~~~av~~aDIVi~aT~ 198 (314)
T PRK06141 131 VGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEV-----VTDLEAAVRQADIISCATL 198 (314)
T ss_pred ECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE-----eCCHHHHHhcCCEEEEeeC
Confidence 3699999999987765 44 8899999998874432211 212221 2334567889999987733
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.13 Score=40.56 Aligned_cols=31 Identities=3% Similarity=-0.232 Sum_probs=28.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA 38 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~ 38 (208)
.+.|..|..++..|+..||+|++++++++..
T Consensus 11 iGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~ 41 (286)
T PRK07819 11 VGAGQMGAGIAEVCARAGVDVLVFETTEELA 41 (286)
T ss_pred EcccHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 4799999999999999999999999998763
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=1 Score=38.31 Aligned_cols=59 Identities=10% Similarity=0.015 Sum_probs=40.9
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+-|..|...++.|.++|++|++.++++.........++.++.++- ++ +.+.++|.||.+
T Consensus 19 G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~-~~----~~l~~~D~VV~S 77 (488)
T PRK03369 19 GAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSD-AV----QQIADYALVVTS 77 (488)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcc-hH----hHhhcCCEEEEC
Confidence 689999999999999999999998765543322223566654432 11 245678988876
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.44 Score=35.94 Aligned_cols=78 Identities=6% Similarity=-0.135 Sum_probs=44.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCch----------hhhhhc--CCceEEE-EcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKR----------NAMESF--GTYVESM-AGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~----------~~~~~~--~~~v~~v-~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
++-|.+|+++++.|.+.|.+|++++-... ...+.. ..++..+ .+|..+.+++... +||++|-|+.
T Consensus 29 qGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~DVlipaA~ 106 (217)
T cd05211 29 QGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGL--DVDIFAPCAL 106 (217)
T ss_pred ECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceec--cccEEeeccc
Confidence 47999999999999999998887765433 221111 1122221 2344444544432 7899996633
Q ss_pred Cch--hhhhhhcCCC
Q 028525 75 GFI--SNAGSLKGVQ 87 (208)
Q Consensus 75 ~~~--~~a~~~~gv~ 87 (208)
+.. .+.+.+.+++
T Consensus 107 ~~~i~~~~a~~l~a~ 121 (217)
T cd05211 107 GNVIDLENAKKLKAK 121 (217)
T ss_pred cCccChhhHhhcCcc
Confidence 322 2334444444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.58 Score=37.36 Aligned_cols=71 Identities=14% Similarity=0.009 Sum_probs=42.7
Q ss_pred ccccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC-c---hhhhh
Q 028525 7 MKRKKMNFRMVILSLIVKR-TRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG-F---ISNAG 81 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~-~---~~~a~ 81 (208)
.+.||++|..|++.|.++. .++..+..+..+ ++.+. ...+.++|+||+|.+. . ....+
T Consensus 8 vGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--------------~~~~~---~~~~~~~DvvFlalp~~~s~~~~~~~ 70 (313)
T PRK11863 8 DGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--------------DAAAR---RELLNAADVAILCLPDDAAREAVALI 70 (313)
T ss_pred ECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--------------cccCc---hhhhcCCCEEEECCCHHHHHHHHHHH
Confidence 3679999999999887765 356555544322 11111 2355689999998543 2 22333
Q ss_pred hhcCCCeEEEecee
Q 028525 82 SLKGVQHVILLSQL 95 (208)
Q Consensus 82 ~~~gv~~~v~~Ss~ 95 (208)
.+.|+ ++|-.|+.
T Consensus 71 ~~~g~-~VIDlSad 83 (313)
T PRK11863 71 DNPAT-RVIDASTA 83 (313)
T ss_pred HhCCC-EEEECChh
Confidence 34555 56667753
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.31 Score=36.17 Aligned_cols=23 Identities=9% Similarity=-0.101 Sum_probs=20.7
Q ss_pred ccccCccHHHHHHHHHhCCCcEE
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIK 29 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~ 29 (208)
.+++|..|+.+++.|.+.||.|+
T Consensus 6 iG~~G~mG~~~~~~~~~~g~~v~ 28 (197)
T PRK06444 6 IGKNGRLGRVLCSILDDNGLGVY 28 (197)
T ss_pred EecCCcHHHHHHHHHHhCCCEEE
Confidence 35789999999999999999986
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.44 Score=38.26 Aligned_cols=57 Identities=9% Similarity=-0.139 Sum_probs=40.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|.||+++++.|..-|.+|+++++..++..... ... .-.+++.+.+..+|+|++.
T Consensus 148 iG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~---~~~-----~~~~~Ld~lL~~sDiv~lh 204 (324)
T COG0111 148 IGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV---DGV-----VGVDSLDELLAEADILTLH 204 (324)
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc---ccc-----eecccHHHHHhhCCEEEEc
Confidence 36999999999999999999999998443322111 011 1234567789999999954
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=90.92 E-value=2.1 Score=35.39 Aligned_cols=84 Identities=13% Similarity=0.028 Sum_probs=53.2
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCc-------------------hhh------hhhcCCc--eEEEEcCCCCHHHHH
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDK-------------------RNA------MESFGTY--VESMAGDASNKKFLK 60 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~-------------------~~~------~~~~~~~--v~~v~~Dl~d~~~l~ 60 (208)
+-|-+|++++..|...|. ++++++.+. .|. .....+. ++.+...++ .+.+.
T Consensus 49 G~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~-~~~~~ 127 (392)
T PRK07878 49 GAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLD-PSNAV 127 (392)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEeccCC-hhHHH
Confidence 689999999999999994 577765431 010 0112233 444555554 45567
Q ss_pred HHhcCCCEEEEcCCCc-----hhhhhhhcCCCeEEEece
Q 028525 61 TALRGVRSIICPSEGF-----ISNAGSLKGVQHVILLSQ 94 (208)
Q Consensus 61 ~~~~~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~Ss 94 (208)
+.++++|+||.|.+.. +.+++...+++ +|+.+.
T Consensus 128 ~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p-~v~~~~ 165 (392)
T PRK07878 128 ELFSQYDLILDGTDNFATRYLVNDAAVLAGKP-YVWGSI 165 (392)
T ss_pred HHHhcCCEEEECCCCHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 7889999999885543 34566666654 666543
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.68 Score=40.98 Aligned_cols=59 Identities=12% Similarity=-0.026 Sum_probs=39.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|.+|+.+++.|.+.|++|++++|+....... ..++.. ..|.+++ +..++|+||+|.+
T Consensus 59 G~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~-~~Gv~~----~~d~~e~--~~~~aDvViLavP 117 (667)
T PLN02712 59 GFGNYGQFLAKTLISQGHTVLAHSRSDHSLAAR-SLGVSF----FLDPHDL--CERHPDVILLCTS 117 (667)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HcCCEE----eCCHHHH--hhcCCCEEEEcCC
Confidence 699999999999999999999999985442211 123332 3343321 2246899998844
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.26 Score=39.53 Aligned_cols=62 Identities=8% Similarity=0.087 Sum_probs=41.2
Q ss_pred cccCccHHHHHHHHHh-CC-CcEEEEEcCchhhhhhc---CC--ceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIV-KR-TRIKALVKDKRNAMESF---GT--YVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~-~g-~~V~~~~R~~~~~~~~~---~~--~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.++|.+|+..+..++. ++ .+|.+++|++++..++. .. ++++.. +.| +.+++.++|+||+|++
T Consensus 133 iGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~--~~~---~~~~~~~aDiVi~aT~ 201 (325)
T PRK08618 133 IGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYV--VNS---ADEAIEEADIIVTVTN 201 (325)
T ss_pred ECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEE--eCC---HHHHHhcCCEEEEccC
Confidence 3699999999988764 45 67999999988743321 11 233222 333 3457789999998843
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.91 Score=36.52 Aligned_cols=83 Identities=11% Similarity=0.034 Sum_probs=46.5
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCchh---hhhhcCCceE-E--EEcCCCCHHHHHHHhcCCCEEEEcCC-Cchhh
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKRN---AMESFGTYVE-S--MAGDASNKKFLKTALRGVRSIICPSE-GFISN 79 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~---~~~~~~~~v~-~--v~~Dl~d~~~l~~~~~~~d~vi~~~~-~~~~~ 79 (208)
+.+|+.|.+|++.|..+. .++..++.+..+ ..+..+ +.. . ......|++.+ ...+||+||.|.+ +...+
T Consensus 9 GasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p-~l~g~~~l~~~~~~~~~~--~~~~~DvvFlalPhg~s~~ 85 (349)
T COG0002 9 GASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHP-NLRGLVDLPFQTIDPEKI--ELDECDVVFLALPHGVSAE 85 (349)
T ss_pred cCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCc-ccccccccccccCChhhh--hcccCCEEEEecCchhHHH
Confidence 579999999999998774 566666543321 222222 111 1 11222233333 4557999999944 44333
Q ss_pred h---hhhcCCCeEEEece
Q 028525 80 A---GSLKGVQHVILLSQ 94 (208)
Q Consensus 80 a---~~~~gv~~~v~~Ss 94 (208)
. ....|++ +|-+|.
T Consensus 86 ~v~~l~~~g~~-VIDLSa 102 (349)
T COG0002 86 LVPELLEAGCK-VIDLSA 102 (349)
T ss_pred HHHHHHhCCCe-EEECCc
Confidence 3 3334664 777775
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.91 Score=36.16 Aligned_cols=71 Identities=13% Similarity=-0.014 Sum_probs=42.7
Q ss_pred ccccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC-ch---hhhh
Q 028525 7 MKRKKMNFRMVILSLIVKR-TRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG-FI---SNAG 81 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~-~~---~~a~ 81 (208)
.+.+|+.|..|++.|.... .++..+.-+.. .+-.+ ..+.++++|++|+|.+. .. ...+
T Consensus 7 vGasGy~G~el~rlL~~HP~~el~~l~s~~~--------------~~~~~---~~~~~~~~D~vFlalp~~~s~~~~~~~ 69 (310)
T TIGR01851 7 DGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------------KDAAE---RAKLLNAADVAILCLPDDAAREAVSLV 69 (310)
T ss_pred ECCCChhHHHHHHHHhCCCCeEEEEEecccc--------------cCcCC---HhHhhcCCCEEEECCCHHHHHHHHHHH
Confidence 4679999999999888764 45666642221 11112 23456789999998543 22 2233
Q ss_pred hhcCCCeEEEecee
Q 028525 82 SLKGVQHVILLSQL 95 (208)
Q Consensus 82 ~~~gv~~~v~~Ss~ 95 (208)
...|+ ++|-.|+.
T Consensus 70 ~~~g~-~VIDlSad 82 (310)
T TIGR01851 70 DNPNT-CIIDASTA 82 (310)
T ss_pred HhCCC-EEEECChH
Confidence 34455 57777753
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.68 Score=39.81 Aligned_cols=55 Identities=13% Similarity=-0.182 Sum_probs=39.7
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|..-|.+|++++|..+.... ...+++.+ ++.++++.+|+|+++
T Consensus 147 G~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~~g~~~~--------~l~ell~~aDiV~l~ 201 (526)
T PRK13581 147 GLGRIGSEVAKRAKAFGMKVIAYDPYISPERA-AQLGVELV--------SLDELLARADFITLH 201 (526)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCChhHH-HhcCCEEE--------cHHHHHhhCCEEEEc
Confidence 69999999999999999999999986433211 11233322 355678889999966
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 208 | ||||
| 1xq6_A | 253 | X-ray Structure Of Gene Product From Arabidopsis Th | 8e-05 |
| >pdb|1XQ6|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana At5g02240 Length = 253 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 2e-16
Identities = 46/228 (20%), Positives = 82/228 (35%), Gaps = 53/228 (23%)
Query: 27 RIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIIC-------PSEGFISN 79
K LV+ + E G + GD ++ + A +G+ +++ GF
Sbjct: 32 VAKGLVRSAQGK-EKIGGEADVFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPT 90
Query: 80 AGSLK----------------------------GVQHVILLSQLSVYRGSGGIQALMKGN 111
G GV+H++++ + + L GN
Sbjct: 91 KGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGN 150
Query: 112 ---ARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEG----CAANGSLSKED 164
++ AEQ L SG PYTIIR G L + GG + + ++ + D
Sbjct: 151 ILVWKRKAEQ---YLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRAD 207
Query: 165 AAFICVEALESIPQTGLIFEVVNGEE----KVSDWKKCFSRLMEKTGK 208
A +C++AL F++ + E D+K FS++ T +
Sbjct: 208 VAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQV---TSR 252
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 4e-15
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 85 GVQHVILLSQLSVYRGSGGIQALMK-GNARKLAEQDESMLMASGIPYTIIRTGVLQNTPG 143
G++ I++S + G + A++LA+ L S + YTI+R G L N
Sbjct: 122 GIKRFIMVSSVGTVDPDQGPMNMRHYLVAKRLADD---ELKRSSLDYTIVRPGPLSNEES 178
Query: 144 GKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQT-GLIFEVVNGEEKVSD 194
+ S+++ D A + E ++ T G FEV+NG+ ++
Sbjct: 179 TGKVTVSPHFSEITRSITRHDVAKVIAELVDQ-QHTIGKTFEVLNGDTPIAK 229
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 3e-14
Identities = 21/165 (12%), Positives = 47/165 (28%), Gaps = 18/165 (10%)
Query: 27 RIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGFISNAGSLK-- 84
+ LV+D + GD + + G ++I G ++
Sbjct: 29 EVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIV-LLGTRNDLSPTTVM 87
Query: 85 --------------GVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPY 130
GV V+ + + + ++ + +L SG+ Y
Sbjct: 88 SEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMHK-VLRESGLKY 146
Query: 131 TIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALES 175
+ + + P +G + +SK D + L +
Sbjct: 147 VAVMPPHIGDQPLTGAYTVTLDGRGPSRVISKHDLGHFMLRCLTT 191
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 5e-14
Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 12/161 (7%)
Query: 27 RIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF--------IS 78
+ + + + T + + GD N LK A++G + G +
Sbjct: 50 KQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDLDIQANSVI 109
Query: 79 NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQD----ESMLMASGIPYTIIR 134
A V+ +I + L +Y G + + ASG+ YTI+R
Sbjct: 110 AAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAVIGEPLKPFRRAADAIEASGLEYTILR 169
Query: 135 TGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALES 175
L + +S++ A + + ++
Sbjct: 170 PAWLTDEDIIDYELTSRNEPFKGTIVSRKSVAALITDIIDK 210
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 8e-12
Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 19/152 (12%)
Query: 48 SMAGDASNKKFLKTALRGVRSIICPSEGFISNAGSLKGVQHVILLSQLSVYRGSGGIQAL 107
+++G + K LK L G ++ A V+ ILLS + + I A
Sbjct: 69 NVSG-SGGKSLLKVDLYGAVKLM--------QAAEKAEVKRFILLSTIFSLQPEKWIGAG 119
Query: 108 MKGNARKL---AEQDESMLMASGIPYTIIRTGVLQNTPG-GKQGFQFEEGCAANGSLSKE 163
D + + + YTII+ G L G + + S +
Sbjct: 120 FDALKDYYIAKHFADLYLTKETNLDYTIIQPGALTEEEATGL----IDINDEVSASNTIG 175
Query: 164 DAAFICVEALESIPQT-GLIFEVVNGEEKVSD 194
D A E + + + G + + NG+ + +
Sbjct: 176 DVADTIKELVMT-DHSIGKVISMHNGKTAIKE 206
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 2e-11
Identities = 29/185 (15%), Positives = 58/185 (31%), Gaps = 15/185 (8%)
Query: 27 RIKALVKDKRNAMESFGT---YVESMAGDASNKKFLKTALRGVRSIICPSEGFISNAGSL 83
I + + + V + G N L+ A+ + + S+ S+
Sbjct: 32 HITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESGSDMASI 91
Query: 84 ------KGVQHVILLSQLSVY-RGSGGIQALMKGNARKLAEQD----ESMLMASGIPYTI 132
++ VI +S + ++ N Q ++L S + YTI
Sbjct: 92 VKALSRXNIRRVIGVSMAGLSGEFPVALEKWTFDNLPISYVQGERQARNVLRESNLNYTI 151
Query: 133 IRTGVLQNTPGGKQGFQFEEGCA-ANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEK 191
+R L N P EG + +S+E + L + +T + E
Sbjct: 152 LRLTWLYNDPEXTDYELIPEGAQFNDAQVSREAVVKAIFDILHAADETPFHRTSIGVGEP 211
Query: 192 VSDWK 196
+ +
Sbjct: 212 GTHYD 216
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-08
Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 23/144 (15%)
Query: 15 RMVILSLIVKRT-RIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRS--IIC 71
+ I V++ + + V D N++ + A +G+ + I
Sbjct: 14 THITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIP 73
Query: 72 PSEG-----------FISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDE 120
+ A GV H+I + + + + G A
Sbjct: 74 SIIHPSFKRIPEVENLVYAAKQ-SGVAHIIFIGYYADQHNNPFHMSPYFGYA-------S 125
Query: 121 SMLMASGIPYTIIRTGV-LQNTPG 143
+L SGI YT +R + +
Sbjct: 126 RLLSTSGIDYTYVRMAMYMDPLKP 149
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 23/143 (16%)
Query: 15 RMVILSLI--VKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRS--II 70
VI SL+ V ++I A+V++ A + D ++ L +AL+GV +I
Sbjct: 13 HYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLI 72
Query: 71 CPSEG---------FISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDES 121
SE I+ A + GV+ + S L G+ E
Sbjct: 73 SSSEVGQRAPQHRNVINAAKAA-GVKFIAYTSLLHADTSPLGLADEHIET--------EK 123
Query: 122 MLMASGIPYTIIRTGV-LQNTPG 143
ML SGI YT++R G +N
Sbjct: 124 MLADSGIVYTLLRNGWYSENYLA 146
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 20/144 (13%), Positives = 53/144 (36%), Gaps = 20/144 (13%)
Query: 27 RIKALVKD--KRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF-------- 76
+++ + ++ K+ A E E + GD ++ ++ AL G + + +
Sbjct: 32 KVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTNYWESCSQEQE 91
Query: 77 ------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPY 130
+++ G+ +V+ ++ + + G A + + E+ G+P
Sbjct: 92 VKQGKLLADLARRLGLHYVVYSGLENIKKLTAGRLAAAHFDGKGEVEE---YFRDIGVPM 148
Query: 131 TIIRTGV-LQNTPGGKQGFQFEEG 153
T +R +N + +G
Sbjct: 149 TSVRLPCYFENLLSHFLPQKAPDG 172
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-07
Identities = 33/182 (18%), Positives = 57/182 (31%), Gaps = 32/182 (17%)
Query: 15 RMVILSLI--VKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRS--II 70
+VI L+ V ++I A+V++ A VE GD + + L+ A GV I
Sbjct: 14 GLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFI 73
Query: 71 CPSEG-----------FISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQD 119
+ A GV+H+ + +
Sbjct: 74 SGPHYDNTLLIVQHANVV-KAARDAGVKHIAYTGYAFAEESIIPLAHVHLAT-------- 124
Query: 120 ESMLMASGIPYTIIRTGV-LQNTPGGKQGFQFEEG----CAANGSLS---KEDAAFICVE 171
E + + IPYT +R + E G A +G ++ + + A
Sbjct: 125 EYAIRTTNIPYTFLRNALYTDFFVNEGLRASTESGAIVTNAGSGIVNSVTRNELALAAAT 184
Query: 172 AL 173
L
Sbjct: 185 VL 186
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 1e-04
Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 11/124 (8%)
Query: 22 IVKRTRIKALVKDKRNAMESFGTY-VESMAGDASNKKFLKTALRGVRSIIC-------PS 73
+V++T A + K ++++ + V + GD ++ + L A++ V +IC
Sbjct: 32 LVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVICAAGRLLIED 91
Query: 74 EGFISNAGSLKGVQHVILLSQLSV-YRGSGGIQALMKGNARKLAEQDESMLMASGIPYTI 132
+ I A G S+ + ++ + + K + + + A G+PYT
Sbjct: 92 QVKIIKAIKEAGNVKKFFPSEFGLDVDRHDAVEPVRQVFEEKASIRRV--IEAEGVPYTY 149
Query: 133 IRTG 136
+
Sbjct: 150 LCCH 153
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 5e-04
Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 11/124 (8%)
Query: 22 IVKRTRIKALVKDKRNAMESFGTY-VESMAGDASNKKFLKTALRGVRSIIC-------PS 73
++ R + +K +ESF + G + L A++ V +I S
Sbjct: 33 LLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVISTVGSLQIES 92
Query: 74 EGFISNAGSLKGVQHVILLSQLSV-YRGSGGIQALMKGNARKLAEQDESMLMASGIPYTI 132
+ I A G S+ ++ K + + A GIPYT
Sbjct: 93 QVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRA--IEAEGIPYTY 150
Query: 133 IRTG 136
+ +
Sbjct: 151 VSSN 154
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 208 | |||
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.95 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.95 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.95 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.94 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.94 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.94 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.94 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.94 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.94 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.94 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.94 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.94 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.94 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.94 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.93 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.93 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.93 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.93 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.93 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.93 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.93 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.92 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.92 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.92 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.92 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.92 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.92 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.92 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.92 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.92 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.92 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.92 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.91 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.91 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.91 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.91 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.91 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.91 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.91 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.9 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.9 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.9 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.9 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.9 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.9 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.9 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.9 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.9 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.9 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.9 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.89 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.89 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.89 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.89 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.89 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.89 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.89 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.88 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.88 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.88 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.88 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.88 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.88 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.87 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.87 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.87 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.86 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.86 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.86 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.86 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.86 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.86 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.86 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.86 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.86 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.86 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.86 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.86 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.86 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.85 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.85 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.85 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.85 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.84 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.84 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.84 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.83 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.82 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.82 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.78 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.77 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.76 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.74 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.73 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.72 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.72 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.71 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.71 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.71 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.7 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.7 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.7 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.7 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.7 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.69 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.69 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.68 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.68 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.68 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.68 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.68 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.68 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.68 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.68 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.68 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.67 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.67 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.67 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.67 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.67 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.67 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.66 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.66 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.66 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.66 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.66 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.66 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.66 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.66 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.66 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.66 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.66 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.66 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.66 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.66 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.65 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.65 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.65 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.65 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.65 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.65 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.65 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.65 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.64 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.64 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.64 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.64 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.64 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.64 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.64 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.64 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.64 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.64 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.64 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.64 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.64 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.64 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.63 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.63 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.63 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.63 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.63 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.63 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.63 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.63 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.63 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.62 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.62 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.62 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.61 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.61 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.61 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.61 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.61 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.61 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.61 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.61 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.61 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.61 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.61 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.61 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.61 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.6 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.6 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.6 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.6 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.59 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.59 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.59 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.59 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.59 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.59 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.59 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.59 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.58 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.58 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.58 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.58 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.58 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.58 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.58 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.58 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.58 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.58 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.58 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.58 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.57 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.57 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.57 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.57 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.57 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.57 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.57 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.57 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.56 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.56 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.56 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.56 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.55 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.55 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.55 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.55 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.55 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.54 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.54 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.54 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.53 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.53 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.53 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.52 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.52 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.52 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.52 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.52 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.52 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.52 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.51 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.51 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.51 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.51 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.51 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.51 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.5 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.5 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.5 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.5 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.5 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.5 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.49 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.49 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.49 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.49 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.49 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.48 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.48 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.47 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.47 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.47 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.47 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.47 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.46 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.46 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.46 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.46 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.46 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.46 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.45 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.45 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.45 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.45 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.44 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.44 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.44 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.43 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.43 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.42 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.42 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.42 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.42 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.41 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.39 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.39 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.38 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.38 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.32 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.32 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.3 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.29 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.28 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.28 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.27 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.26 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.24 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.21 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.16 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.15 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.14 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.06 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.06 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 98.95 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 98.82 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 98.79 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.75 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 98.73 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.68 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 98.68 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 98.66 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.64 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 98.54 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.51 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 98.51 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.49 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.48 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.45 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 98.32 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 98.31 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.29 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 98.27 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.23 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 98.22 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.22 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 98.19 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 98.17 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 98.13 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 98.1 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.02 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.96 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.93 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.91 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.79 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.71 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.66 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.65 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 97.64 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.64 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.43 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.32 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 97.14 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.12 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 97.1 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 97.09 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 96.97 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 96.9 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.88 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 96.86 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.85 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 96.84 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.8 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.78 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 96.76 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 96.76 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.75 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.73 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.71 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 96.71 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 96.68 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.64 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.59 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 96.58 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 96.56 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 96.54 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 96.52 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 96.49 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.49 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.45 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.45 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 96.44 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 96.41 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.39 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.35 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 96.34 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.3 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.28 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 96.28 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 96.27 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 96.26 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 96.23 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.21 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 96.2 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 96.19 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 96.18 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.17 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 96.14 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.13 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.13 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.99 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 95.98 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 95.98 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 95.93 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 95.92 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 95.89 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 95.8 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 95.79 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 95.76 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 95.76 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 95.74 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 95.74 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 95.74 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 95.71 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 95.71 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 95.71 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 95.68 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 95.65 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 95.63 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 95.61 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 95.61 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 95.59 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 95.59 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.56 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.56 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 95.54 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 95.51 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 95.5 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.48 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 95.47 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.47 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 95.47 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 95.45 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.36 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 95.34 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 95.33 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 95.33 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 95.31 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 95.31 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 95.27 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 95.25 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 95.22 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.2 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 95.19 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 95.16 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 95.16 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 95.16 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.13 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 95.12 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 95.12 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 94.12 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 95.11 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 95.1 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 95.09 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 95.04 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 95.02 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 94.99 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 94.97 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 94.96 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 94.95 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 94.92 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 94.9 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 94.89 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 94.88 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 94.87 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 94.87 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 94.86 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 94.8 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 94.78 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 94.76 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 94.76 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 94.7 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 94.69 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 94.69 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 94.69 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 94.66 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 94.65 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 94.62 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 94.6 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 94.59 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 94.57 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 94.55 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 94.54 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.52 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 94.52 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 94.51 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 94.5 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 94.46 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 94.43 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 94.41 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 94.39 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 94.35 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 94.27 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 94.25 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 94.24 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 94.23 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 94.23 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.21 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 94.2 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 94.16 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 94.07 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 94.07 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 94.06 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 94.05 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 94.03 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 94.01 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 93.91 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 93.9 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 93.89 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 93.86 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 93.79 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 93.77 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.65 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 93.65 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 93.64 |
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=177.98 Aligned_cols=181 Identities=18% Similarity=0.159 Sum_probs=143.6
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCC-HHHHHHHhcCCCEEEEcCCC----------
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASN-KKFLKTALRGVRSIICPSEG---------- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d-~~~l~~~~~~~d~vi~~~~~---------- 75 (208)
-++||+||++++++|+++||+|++++|++++.... .+++++.+|++| ++++.++++++|+||++++.
T Consensus 6 tGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~~~~~~~n~ 83 (219)
T 3dqp_A 6 VGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY--NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGGKSLLKVDL 83 (219)
T ss_dssp ESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC--TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTTSSCCCCCC
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc--CCceEEEecccCCHHHHHHHHcCCCEEEECCcCCCCCcEeEeH
Confidence 36799999999999999999999999998775433 579999999999 99999999999999987321
Q ss_pred ----chhhhhhhcCCCeEEEeceeeeccCCCC-------cccccchhHHHhHHHHHHHH-HhcCCCEEEEeccccccCCC
Q 028525 76 ----FISNAGSLKGVQHVILLSQLSVYRGSGG-------IQALMKGNARKLAEQDESML-MASGIPYTIIRTGVLQNTPG 143 (208)
Q Consensus 76 ----~~~~a~~~~gv~~~v~~Ss~~~~~~~~~-------~~~~~~~~~~~~~~~~e~~l-~~~~~~~tivRp~~~~~~~~ 143 (208)
.+.+++++.++++||++||.+++.+... ..+|.. . +..+|+++ +..+++|+++||+++++...
T Consensus 84 ~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~e~~~~~~~~Y~~--s---K~~~e~~~~~~~~i~~~ilrp~~v~g~~~ 158 (219)
T 3dqp_A 84 YGAVKLMQAAEKAEVKRFILLSTIFSLQPEKWIGAGFDALKDYYI--A---KHFADLYLTKETNLDYTIIQPGALTEEEA 158 (219)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTTCGGGCCSHHHHHTHHHHH--H---HHHHHHHHHHSCCCEEEEEEECSEECSCC
T ss_pred HHHHHHHHHHHHhCCCEEEEECcccccCCCcccccccccccHHHH--H---HHHHHHHHHhccCCcEEEEeCceEecCCC
Confidence 1456788889999999999877653211 112221 1 22567888 67899999999999987654
Q ss_pred CccceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCcchhhHHH
Q 028525 144 GKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVSDWKK 197 (208)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~~~~e~~~ 197 (208)
.+. +.+ +.....+++++|+|++++.+++++...++.|++++++.+++|+.+
T Consensus 159 ~~~-~~~--~~~~~~~i~~~Dva~~i~~~l~~~~~~g~~~~i~~g~~~~~e~~~ 209 (219)
T 3dqp_A 159 TGL-IDI--NDEVSASNTIGDVADTIKELVMTDHSIGKVISMHNGKTAIKEALE 209 (219)
T ss_dssp CSE-EEE--SSSCCCCEEHHHHHHHHHHHHTCGGGTTEEEEEEECSEEHHHHHH
T ss_pred CCc-ccc--CCCcCCcccHHHHHHHHHHHHhCccccCcEEEeCCCCccHHHHHH
Confidence 432 323 355678899999999999999988877999999988888887765
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=179.48 Aligned_cols=186 Identities=16% Similarity=0.224 Sum_probs=143.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCce-EEEEcCCCCHHHHHHHhcCCCEEEEcCCC-----------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYV-ESMAGDASNKKFLKTALRGVRSIICPSEG----------- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v-~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~----------- 75 (208)
++||+||++++++|+++||+|++++|++++.......++ +++.+|++ +++.+++.++|+||++++.
T Consensus 28 GatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~--~~~~~~~~~~D~vi~~ag~~~~~~~~~~~~ 105 (236)
T 3e8x_A 28 GANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLE--EDFSHAFASIDAVVFAAGSGPHTGADKTIL 105 (236)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTT--SCCGGGGTTCSEEEECCCCCTTSCHHHHHH
T ss_pred CCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccH--HHHHHHHcCCCEEEECCCCCCCCCccccch
Confidence 469999999999999999999999999888655444578 99999999 7788899999999988321
Q ss_pred -------chhhhhhhcCCCeEEEeceeeeccCC---CCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCCc
Q 028525 76 -------FISNAGSLKGVQHVILLSQLSVYRGS---GGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGK 145 (208)
Q Consensus 76 -------~~~~a~~~~gv~~~v~~Ss~~~~~~~---~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~ 145 (208)
.+.+++++.+++|||++||.+.+.+. .+...|.. .| ..+|++++..+++++++||+++++....+
T Consensus 106 ~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~~Y~~--sK---~~~e~~~~~~gi~~~~lrpg~v~~~~~~~ 180 (236)
T 3e8x_A 106 IDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDPDQGPMNMRHYLV--AK---RLADDELKRSSLDYTIVRPGPLSNEESTG 180 (236)
T ss_dssp TTTHHHHHHHHHHHHHTCCEEEEECCTTCSCGGGSCGGGHHHHH--HH---HHHHHHHHHSSSEEEEEEECSEECSCCCS
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCChhhhhhHHH--HH---HHHHHHHHHCCCCEEEEeCCcccCCCCCC
Confidence 13456777899999999997765432 11222222 22 25688899999999999999998765544
Q ss_pred cceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCcchhhHHHHHH
Q 028525 146 QGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVSDWKKCFS 200 (208)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~~~~e~~~~~~ 200 (208)
.............+++++|+|++++.+++++...++.|++++++.+++|+++.+.
T Consensus 181 ~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~~~~v~~~~~~~~e~~~~i~ 235 (236)
T 3e8x_A 181 KVTVSPHFSEITRSITRHDVAKVIAELVDQQHTIGKTFEVLNGDTPIAKVVEQLG 235 (236)
T ss_dssp EEEEESSCSCCCCCEEHHHHHHHHHHHTTCGGGTTEEEEEEECSEEHHHHHHTC-
T ss_pred eEEeccCCCcccCcEeHHHHHHHHHHHhcCccccCCeEEEeCCCcCHHHHHHHhc
Confidence 3222333333478899999999999999988778999999988778888887654
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=179.58 Aligned_cols=192 Identities=13% Similarity=0.128 Sum_probs=149.8
Q ss_pred ccccCccHHHHHHHHHhC-CCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC----------
Q 028525 7 MKRKKMNFRMVILSLIVK-RTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG---------- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~-g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~---------- 75 (208)
-++||+||++++++|+++ |++|++++|++++.......+++++.+|++|++++.++++++|+||++++.
T Consensus 6 tGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~ 85 (289)
T 3e48_A 6 TGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIHPSFKRIPE 85 (289)
T ss_dssp ETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCCCSHHHHHHH
T ss_pred EcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCccchhhHHH
Confidence 367999999999999998 999999999998866555568999999999999999999999999988331
Q ss_pred --chhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCC-------cc
Q 028525 76 --FISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGG-------KQ 146 (208)
Q Consensus 76 --~~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~-------~~ 146 (208)
.+.+++++.|++|||++||.+... ..++..... ...+|+++++.+++|+++||+++++.... ..
T Consensus 86 ~~~l~~aa~~~gv~~iv~~Ss~~~~~----~~~~~~~~~---~~~~e~~~~~~g~~~~ilrp~~~~~~~~~~~~~~~~~~ 158 (289)
T 3e48_A 86 VENLVYAAKQSGVAHIIFIGYYADQH----NNPFHMSPY---FGYASRLLSTSGIDYTYVRMAMYMDPLKPYLPELMNMH 158 (289)
T ss_dssp HHHHHHHHHHTTCCEEEEEEESCCST----TCCSTTHHH---HHHHHHHHHHHCCEEEEEEECEESTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEEcccCCCC----CCCCccchh---HHHHHHHHHHcCCCEEEEeccccccccHHHHHHHHHCC
Confidence 145678889999999999976432 122222111 11467888889999999999998764210 11
Q ss_pred ceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 147 GFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 147 ~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
...+..+.....+++++|+|++++.++.++...++.|+++ +. .+..|+++.+++++|++
T Consensus 159 ~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~~g~~~~~~-~~~~s~~e~~~~~~~~~g~~ 218 (289)
T 3e48_A 159 KLIYPAGDGRINYITRNDIARGVIAIIKNPDTWGKRYLLS-GYSYDMKELAAILSEASGTE 218 (289)
T ss_dssp EECCCCTTCEEEEECHHHHHHHHHHHHHCGGGTTCEEEEC-CEEEEHHHHHHHHHHHHTSC
T ss_pred CEecCCCCceeeeEEHHHHHHHHHHHHcCCCcCCceEEeC-CCcCCHHHHHHHHHHHHCCc
Confidence 1222333444668999999999999999887778999999 66 49999999999999875
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=172.67 Aligned_cols=180 Identities=13% Similarity=0.096 Sum_probs=132.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc-----------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF----------- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~----------- 76 (208)
++||+||++|+++|+++||+|++++|++++.... ..+++++.+|++|++++.++++++|+||++++..
T Consensus 11 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~ 89 (227)
T 3dhn_A 11 GASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE-NEHLKVKKADVSSLDEVCEVCKGADAVISAFNPGWNNPDIYDETI 89 (227)
T ss_dssp TCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC-CTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC------CCSHHH
T ss_pred cCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc-cCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCCCCChhHHHHHH
Confidence 5699999999999999999999999998775433 3579999999999999999999999999883211
Q ss_pred -----hhhhhhhcCCCeEEEeceeeeccCC----------CCcccccchhHHHhHHHHHHHHH-hcCCCEEEEecccccc
Q 028525 77 -----ISNAGSLKGVQHVILLSQLSVYRGS----------GGIQALMKGNARKLAEQDESMLM-ASGIPYTIIRTGVLQN 140 (208)
Q Consensus 77 -----~~~a~~~~gv~~~v~~Ss~~~~~~~----------~~~~~~~~~~~~~~~~~~e~~l~-~~~~~~tivRp~~~~~ 140 (208)
+.+++++.+++|||++||.+++... .+..+|.. .|...+...+.++ +.+++|+++||+.+++
T Consensus 90 ~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~p~~~Y~~--sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g 167 (227)
T 3dhn_A 90 KVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLRLMDSGEVPENILPG--VKALGEFYLNFLMKEKEIDWVFFSPAADMR 167 (227)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCSTTSEEETTEEGGGTTCSCGGGHHH--HHHHHHHHHHTGGGCCSSEEEEEECCSEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEeCChhhccCCCCCccccCCcchHHHHHH--HHHHHHHHHHHHhhccCccEEEEeCCcccC
Confidence 3466778899999999998765421 11222222 2222221123333 4789999999999886
Q ss_pred CCCCccceeeecC-----CcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCc
Q 028525 141 TPGGKQGFQFEEG-----CAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEE 190 (208)
Q Consensus 141 ~~~~~~~~~~~~~-----~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~ 190 (208)
.......+..... .....+++++|+|++++.+++++...++.|++++++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~ai~~~l~~~~~~g~~~~~~~~~~ 222 (227)
T 3dhn_A 168 PGVRTGRYRLGKDDMIVDIVGNSHISVEDYAAAMIDELEHPKHHQERFTIGYLEH 222 (227)
T ss_dssp SCCCCCCCEEESSBCCCCTTSCCEEEHHHHHHHHHHHHHSCCCCSEEEEEECCSC
T ss_pred CCccccceeecCCCcccCCCCCcEEeHHHHHHHHHHHHhCccccCcEEEEEeehh
Confidence 4332222222111 1225689999999999999999999999999997664
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=179.16 Aligned_cols=192 Identities=19% Similarity=0.233 Sum_probs=149.7
Q ss_pred ccccCccHHHHHHHHHhC--CCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC------c--
Q 028525 7 MKRKKMNFRMVILSLIVK--RTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG------F-- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~--g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~------~-- 76 (208)
-++||+||++++++|+++ ||+|++++|++++...+...+++++.+|++|++++.++++++|+||++++. .
T Consensus 6 tGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~n~~ 85 (287)
T 2jl1_A 6 TGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGPHYDNTLLIV 85 (287)
T ss_dssp TTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCCCSCHHHHHH
T ss_pred EcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCCcCchHHHH
Confidence 467999999999999998 999999999887654433357899999999999999999999999988321 1
Q ss_pred ----hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCCc-------
Q 028525 77 ----ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGK------- 145 (208)
Q Consensus 77 ----~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~------- 145 (208)
+.+++++.+++|||++||.+++.. ..+|.. .| ..+|+++++.+++++++||+.+++.....
T Consensus 86 ~~~~l~~a~~~~~~~~~v~~Ss~~~~~~---~~~y~~--~K---~~~E~~~~~~~~~~~ilrp~~~~~~~~~~~~~~~~~ 157 (287)
T 2jl1_A 86 QHANVVKAARDAGVKHIAYTGYAFAEES---IIPLAH--VH---LATEYAIRTTNIPYTFLRNALYTDFFVNEGLRASTE 157 (287)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEETTGGGC---CSTHHH--HH---HHHHHHHHHTTCCEEEEEECCBHHHHSSGGGHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCC---CCchHH--HH---HHHHHHHHHcCCCeEEEECCEeccccchhhHHHHhh
Confidence 345677889999999999887642 123332 22 25688888899999999999886532111
Q ss_pred -cceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 146 -QGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 146 -~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
....+..++....+++++|+|++++.+++++...++.|+++++. .+..|+++.+.+.+|++
T Consensus 158 ~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~ 220 (287)
T 2jl1_A 158 SGAIVTNAGSGIVNSVTRNELALAAATVLTEEGHENKTYNLVSNQPWTFDELAQILSEVSGKK 220 (287)
T ss_dssp HTEEEESCTTCCBCCBCHHHHHHHHHHHHTSSSCTTEEEEECCSSCBCHHHHHHHHHHHHSSC
T ss_pred CCceeccCCCCccCccCHHHHHHHHHHHhcCCCCCCcEEEecCCCcCCHHHHHHHHHHHHCCc
Confidence 11223334455688999999999999998876678899999875 59999999999998865
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=185.47 Aligned_cols=196 Identities=12% Similarity=0.110 Sum_probs=145.6
Q ss_pred cccCccHHHHHHHHHhC-CCcEEEEEcCchhhhhhc-CCceEEEEcCCC-CHHHHHHHhcCCCEEEEcCC--C-------
Q 028525 8 KRKKMNFRMVILSLIVK-RTRIKALVKDKRNAMESF-GTYVESMAGDAS-NKKFLKTALRGVRSIICPSE--G------- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~-g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~-d~~~l~~~~~~~d~vi~~~~--~------- 75 (208)
++||+||++|+++|+++ ||+|++++|+.++..... ..+++++.+|++ |.+.+.++++++|+||++++ .
T Consensus 31 GatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~ 110 (372)
T 3slg_A 31 GVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQ 110 (372)
T ss_dssp SCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBCCCCHHHHHHC
T ss_pred CCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCccccHHHHhhC
Confidence 46999999999999998 999999999987754433 358999999999 99999999999999998722 1
Q ss_pred -------------chhhhhhhcCCCeEEEeceeeeccCCCCc---------------ccccchhHHHhHHHHHHHHHhc-
Q 028525 76 -------------FISNAGSLKGVQHVILLSQLSVYRGSGGI---------------QALMKGNARKLAEQDESMLMAS- 126 (208)
Q Consensus 76 -------------~~~~a~~~~gv~~~v~~Ss~~~~~~~~~~---------------~~~~~~~~~~~~~~~e~~l~~~- 126 (208)
.+.+++++.+ +||||+||.++|+..... .+...+.. .+..+|++++..
T Consensus 111 ~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~~Y~~--sK~~~E~~~~~~~ 187 (372)
T 3slg_A 111 PLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYAC--SKQLMDRVIWGYG 187 (372)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHT-CEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCcHHHhCCCCCCCCCccccccccCCCCCCCCcHHH--HHHHHHHHHHHHH
Confidence 0345677778 999999999888632110 01101111 122467777654
Q ss_pred --CCCEEEEeccccccCCCCc----------------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCC--CC
Q 028525 127 --GIPYTIIRTGVLQNTPGGK----------------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIP--QT 179 (208)
Q Consensus 127 --~~~~tivRp~~~~~~~~~~----------------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~ 179 (208)
+++++++||+.+++..... ..+. ++.+.....+++++|+|++++.+++++. ..
T Consensus 188 ~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~ 267 (372)
T 3slg_A 188 MEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSNGVAT 267 (372)
T ss_dssp TTTCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHHHHHHHHCGGGTTT
T ss_pred HCCCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHHHHHHHhcccCcCC
Confidence 9999999999998653211 1111 1223344578999999999999999876 57
Q ss_pred CcEEEEee-CC-cchhhHHHHHHHHhhhc
Q 028525 180 GLIFEVVN-GE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 180 ~~~~~i~~-~~-~~~~e~~~~~~~~~~~~ 206 (208)
+++||+++ +. .+..|+++.+.+.+|.+
T Consensus 268 ~~~~ni~~~~~~~s~~e~~~~i~~~~g~~ 296 (372)
T 3slg_A 268 GKIYNIGNPNNNFSVRELANKMLELAAEF 296 (372)
T ss_dssp TEEEEECCTTCEEEHHHHHHHHHHHHHHC
T ss_pred CceEEeCCCCCCccHHHHHHHHHHHhCCC
Confidence 89999998 44 59999999999999875
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-26 Score=180.13 Aligned_cols=195 Identities=11% Similarity=0.030 Sum_probs=144.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh----hhcC-------CceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM----ESFG-------TYVESMAGDASNKKFLKTALRGVRSIICPSEG- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~----~~~~-------~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~- 75 (208)
++||+||++|+++|+++||+|++++|+.+... .... .+++++.+|++|++++.++++++|+||++++.
T Consensus 32 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~ 111 (351)
T 3ruf_A 32 GVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALG 111 (351)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSEEEECCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCEEEECCccC
Confidence 46999999999999999999999999765311 1111 57999999999999999999999999988331
Q ss_pred ---------------------chhhhhhhcCCCeEEEeceeeeccCCCC--------cccccchh-HHHhHHHHHHHHH-
Q 028525 76 ---------------------FISNAGSLKGVQHVILLSQLSVYRGSGG--------IQALMKGN-ARKLAEQDESMLM- 124 (208)
Q Consensus 76 ---------------------~~~~a~~~~gv~~~v~~Ss~~~~~~~~~--------~~~~~~~~-~~~~~~~~e~~l~- 124 (208)
.+.+++.+.+++||||+||.++|+.... ..+...+. .|. .+|++++
T Consensus 112 ~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~---~~E~~~~~ 188 (351)
T 3ruf_A 112 SVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKY---VNEIYAQV 188 (351)
T ss_dssp CHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHH---HHHHHHHH
T ss_pred CcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccCCCCCCCChhHHHHH---HHHHHHHH
Confidence 0345677889999999999999863211 11221111 222 3444443
Q ss_pred ---hcCCCEEEEeccccccCCCCcc------------------ce-eeecCCcCCCcccHHHHHHHHHHHhhC-CCCCCc
Q 028525 125 ---ASGIPYTIIRTGVLQNTPGGKQ------------------GF-QFEEGCAANGSLSKEDAAFICVEALES-IPQTGL 181 (208)
Q Consensus 125 ---~~~~~~tivRp~~~~~~~~~~~------------------~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~-~~~~~~ 181 (208)
+.+++++++||+.+++...... .+ .++.+.....+++++|+|++++.++.. +...++
T Consensus 189 ~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~ 268 (351)
T 3ruf_A 189 YARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDN 268 (351)
T ss_dssp HHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGGGCSE
T ss_pred HHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhhccccCCC
Confidence 4699999999999987532111 11 122334446789999999999999987 456789
Q ss_pred EEEEeeCC-cchhhHHHHHHHHhhh
Q 028525 182 IFEVVNGE-EKVSDWKKCFSRLMEK 205 (208)
Q Consensus 182 ~~~i~~~~-~~~~e~~~~~~~~~~~ 205 (208)
+||++++. .+..|+++.+.+.+++
T Consensus 269 ~~ni~~~~~~s~~e~~~~i~~~~g~ 293 (351)
T 3ruf_A 269 IYNVAVGDRTTLNELSGYIYDELNL 293 (351)
T ss_dssp EEEESCSCCEEHHHHHHHHHHHHHT
T ss_pred EEEeCCCCcccHHHHHHHHHHHhCc
Confidence 99999876 4999999999999987
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.5e-26 Score=172.03 Aligned_cols=198 Identities=21% Similarity=0.326 Sum_probs=149.2
Q ss_pred cccCccHHHHHHHHHhC--CCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC--C--------
Q 028525 8 KRKKMNFRMVILSLIVK--RTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE--G-------- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~--g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~--~-------- 75 (208)
+++|+||++++++|+++ |++|++++|++++.... ..+++++.+|++|++++.++++++|+||++++ .
T Consensus 11 GasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~ 89 (253)
T 1xq6_A 11 GASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDP 89 (253)
T ss_dssp STTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCCCEECTTCCT
T ss_pred cCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEeccccccccccccc
Confidence 57999999999999999 89999999998775443 45789999999999999999999999998721 0
Q ss_pred -----c--------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCCE
Q 028525 76 -----F--------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPY 130 (208)
Q Consensus 76 -----~--------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~ 130 (208)
. +.+++++.++++||++||.+++.+..+..+|........+..+|.+++..++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~i~~ 169 (253)
T 1xq6_A 90 TKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPY 169 (253)
T ss_dssp TSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTCGGGGGGGCCHHHHHHHHHHHHHTSSSCE
T ss_pred cccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCCCCCccccccchhHHHHHHHHHHHHHhCCCce
Confidence 0 123566778999999999987765444445542111112235688888899999
Q ss_pred EEEeccccccCCCCccceeeecCC----cCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC----cchhhHHHHHHHH
Q 028525 131 TIIRTGVLQNTPGGKQGFQFEEGC----AANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE----EKVSDWKKCFSRL 202 (208)
Q Consensus 131 tivRp~~~~~~~~~~~~~~~~~~~----~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~----~~~~e~~~~~~~~ 202 (208)
+++||+.+++.............. ....+++++|+|++++.+++++...++.|++++++ .+..|+++.++++
T Consensus 170 ~~vrpg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dva~~~~~~~~~~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~ 249 (253)
T 1xq6_A 170 TIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQV 249 (253)
T ss_dssp EEEEECEEECSCSSSSCEEEESTTGGGGSSCCEEEHHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHHTC
T ss_pred EEEecceeecCCcchhhhhccCCcCCcCCCCcEEcHHHHHHHHHHHHcCccccCCEEEecCCCcCCCCCHHHHHHHHHHH
Confidence 999999998754322212111111 12457899999999999998877678899999863 5899999999998
Q ss_pred hhhc
Q 028525 203 MEKT 206 (208)
Q Consensus 203 ~~~~ 206 (208)
+|++
T Consensus 250 ~g~~ 253 (253)
T 1xq6_A 250 TSRF 253 (253)
T ss_dssp CCCC
T ss_pred hCCC
Confidence 8763
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=177.71 Aligned_cols=192 Identities=21% Similarity=0.228 Sum_probs=149.5
Q ss_pred ccccCccHHHHHHHHHhC--CCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC---------
Q 028525 7 MKRKKMNFRMVILSLIVK--RTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG--------- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~--g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~--------- 75 (208)
-++||+||++++++|+++ ||+|++++|++++.......+++++.+|++|++++.++++++|+||++++.
T Consensus 5 tGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~ 84 (286)
T 2zcu_A 5 TGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSEVGQRAPQH 84 (286)
T ss_dssp ESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC--------CHH
T ss_pred EcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCCchHHHHHH
Confidence 467999999999999998 999999999987654333357899999999999999999999999987321
Q ss_pred -chhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCC-------ccc
Q 028525 76 -FISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGG-------KQG 147 (208)
Q Consensus 76 -~~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~-------~~~ 147 (208)
.+.+++++.+++|||++||.+++.. ..+|.. .|. .+|+++++.+++++++||+.+.+.... ...
T Consensus 85 ~~l~~a~~~~~~~~~v~~Ss~~~~~~---~~~y~~--sK~---~~e~~~~~~~~~~~ilrp~~~~~~~~~~~~~~~~~~~ 156 (286)
T 2zcu_A 85 RNVINAAKAAGVKFIAYTSLLHADTS---PLGLAD--EHI---ETEKMLADSGIVYTLLRNGWYSENYLASAPAALEHGV 156 (286)
T ss_dssp HHHHHHHHHHTCCEEEEEEETTTTTC---CSTTHH--HHH---HHHHHHHHHCSEEEEEEECCBHHHHHTTHHHHHHHTE
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCC---cchhHH--HHH---HHHHHHHHcCCCeEEEeChHHhhhhHHHhHHhhcCCc
Confidence 1456777889999999999887731 223432 222 568888889999999999987653210 111
Q ss_pred eeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 148 FQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 148 ~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
+.+..+.....+++++|+|++++.+++++...++.|+++++. .+..|+++.+.+.+|++
T Consensus 157 ~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~ 216 (286)
T 2zcu_A 157 FIGAAGDGKIASATRADYAAAAARVISEAGHEGKVYELAGDSAWTLTQLAAELTKQSGKQ 216 (286)
T ss_dssp EEESCTTCCBCCBCHHHHHHHHHHHHHSSSCTTCEEEECCSSCBCHHHHHHHHHHHHSSC
T ss_pred eeccCCCCccccccHHHHHHHHHHHhcCCCCCCceEEEeCCCcCCHHHHHHHHHHHHCCC
Confidence 223334455788999999999999998876678999999874 59999999999998865
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-26 Score=180.04 Aligned_cols=193 Identities=11% Similarity=0.067 Sum_probs=142.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC--C----------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE--G---------- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~--~---------- 75 (208)
++||+||++|+++|+++||+|++++|++++...+...+++++.+|++|++++.++++++|+|||+++ .
T Consensus 20 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~ 99 (342)
T 2x4g_A 20 GATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGYYPSRPRRWQEEV 99 (342)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC------------CHH
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCccCcCCCCCHHHHH
Confidence 4699999999999999999999999988765433333789999999999999999999999998722 1
Q ss_pred --------chhhhhhhcCCCeEEEeceeeeccCCCC----------------cccccchhHHHhHHHHHHHHHh---cCC
Q 028525 76 --------FISNAGSLKGVQHVILLSQLSVYRGSGG----------------IQALMKGNARKLAEQDESMLMA---SGI 128 (208)
Q Consensus 76 --------~~~~a~~~~gv~~~v~~Ss~~~~~~~~~----------------~~~~~~~~~~~~~~~~e~~l~~---~~~ 128 (208)
.+.+++...+++||||+||.++|+.... ..+|.. .|. .+|.+++. .++
T Consensus 100 ~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~E~~~~~p~~~~~~~Y~~--sK~---~~e~~~~~~~~~g~ 174 (342)
T 2x4g_A 100 ASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVL--CKW---ALDEQAREQARNGL 174 (342)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCBCTTCCCSSCCTTSCHHHH--HHH---HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCCCCCCCCCccccccChHHH--HHH---HHHHHHHHHhhcCC
Confidence 1245667789999999999988863221 112221 222 34555543 389
Q ss_pred CEEEEeccccccCCC-C-c-ccee--eec------CCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCcchhhHHH
Q 028525 129 PYTIIRTGVLQNTPG-G-K-QGFQ--FEE------GCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVSDWKK 197 (208)
Q Consensus 129 ~~tivRp~~~~~~~~-~-~-~~~~--~~~------~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~~~~e~~~ 197 (208)
+++++||+.+++... . . ..+. +.. +.....+++++|+|++++.+++++.. ++.|+++++..+..|+++
T Consensus 175 ~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~-g~~~~v~~~~~s~~e~~~ 253 (342)
T 2x4g_A 175 PVVIGIPGMVLGELDIGPTTGRVITAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALERGRI-GERYLLTGHNLEMADLTR 253 (342)
T ss_dssp CEEEEEECEEECSCCSSCSTTHHHHHHHTTCCCEEECCEEEEEEHHHHHHHHHHHHHHSCT-TCEEEECCEEEEHHHHHH
T ss_pred cEEEEeCCceECCCCccccHHHHHHHHHcCCCccccCCCcceeeHHHHHHHHHHHHhCCCC-CceEEEcCCcccHHHHHH
Confidence 999999999986433 1 0 0000 000 22335678999999999999987765 889999976688999999
Q ss_pred HHHHHhhhc
Q 028525 198 CFSRLMEKT 206 (208)
Q Consensus 198 ~~~~~~~~~ 206 (208)
.+.+..|.+
T Consensus 254 ~i~~~~g~~ 262 (342)
T 2x4g_A 254 RIAELLGQP 262 (342)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHhCCC
Confidence 999998865
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=174.39 Aligned_cols=189 Identities=14% Similarity=0.121 Sum_probs=143.6
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC---------chhhh
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG---------FISNA 80 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~---------~~~~a 80 (208)
.|+||++|+++|+++||+|++++|++++.......+++++.+|++|.+ +.++|+||++++. .+.++
T Consensus 13 aG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~-----~~~~d~vi~~a~~~~~~~~~~~~l~~a 87 (286)
T 3ius_A 13 HGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS-----LDGVTHLLISTAPDSGGDPVLAALGDQ 87 (286)
T ss_dssp CCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC-----CTTCCEEEECCCCBTTBCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc-----cCCCCEEEECCCccccccHHHHHHHHH
Confidence 499999999999999999999999988765544467999999999954 7899999988321 14556
Q ss_pred hhh--cCCCeEEEeceeeeccCCC--------CcccccchhHHHhHHHHHHHHHhc-CCCEEEEeccccccCCCC-----
Q 028525 81 GSL--KGVQHVILLSQLSVYRGSG--------GIQALMKGNARKLAEQDESMLMAS-GIPYTIIRTGVLQNTPGG----- 144 (208)
Q Consensus 81 ~~~--~gv~~~v~~Ss~~~~~~~~--------~~~~~~~~~~~~~~~~~e~~l~~~-~~~~tivRp~~~~~~~~~----- 144 (208)
+++ .+++||||+||.++|+... +..+...+. ..+..+|++++.. +++++++||+.+++....
T Consensus 88 ~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~p~~~Y~--~sK~~~E~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~ 165 (286)
T 3ius_A 88 IAARAAQFRWVGYLSTTAVYGDHDGAWVDETTPLTPTAARG--RWRVMAEQQWQAVPNLPLHVFRLAGIYGPGRGPFSKL 165 (286)
T ss_dssp HHHTGGGCSEEEEEEEGGGGCCCTTCEECTTSCCCCCSHHH--HHHHHHHHHHHHSTTCCEEEEEECEEEBTTBSSSTTS
T ss_pred HHhhcCCceEEEEeecceecCCCCCCCcCCCCCCCCCCHHH--HHHHHHHHHHHhhcCCCEEEEeccceECCCchHHHHH
Confidence 666 7899999999999886321 112221111 1122568888887 999999999999875321
Q ss_pred --ccceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 145 --KQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 145 --~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
+....+..+.....+++++|+|++++.+++++. .++.||++++. .+..|+++.+.+..|.+
T Consensus 166 ~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~g~~~~i~~~~~~s~~e~~~~i~~~~g~~ 229 (286)
T 3ius_A 166 GKGGIRRIIKPGQVFSRIHVEDIAQVLAASMARPD-PGAVYNVCDDEPVPPQDVIAYAAELQGLP 229 (286)
T ss_dssp SSSCCCEEECTTCCBCEEEHHHHHHHHHHHHHSCC-TTCEEEECCSCCBCHHHHHHHHHHHHTCC
T ss_pred hcCCccccCCCCcccceEEHHHHHHHHHHHHhCCC-CCCEEEEeCCCCccHHHHHHHHHHHcCCC
Confidence 122223333445788999999999999999877 67899999876 59999999999999865
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=175.33 Aligned_cols=191 Identities=14% Similarity=0.072 Sum_probs=142.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC------------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG------------ 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~------------ 75 (208)
++||+||++|+++|+++||+|++++|++.... . .+++++.+|++ ++++.++++++|+||++++.
T Consensus 9 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~-~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~ 84 (311)
T 3m2p_A 9 GGTGFLGQYVVESIKNDGNTPIILTRSIGNKA--I-NDYEYRVSDYT-LEDLINQLNDVDAVVHLAATRGSQGKISEFHD 84 (311)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCCC--------CCEEEECCCC-HHHHHHHTTTCSEEEECCCCCCSSSCGGGTHH
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc--C-CceEEEEcccc-HHHHHHhhcCCCEEEEccccCCCCChHHHHHH
Confidence 57999999999999999999999999944433 2 27899999999 99999999999999987221
Q ss_pred ------chhhhhhhcCCCeEEEeceeeeccCCC--------Ccccccchh-HHHhHHHHHHHHH----hcCCCEEEEecc
Q 028525 76 ------FISNAGSLKGVQHVILLSQLSVYRGSG--------GIQALMKGN-ARKLAEQDESMLM----ASGIPYTIIRTG 136 (208)
Q Consensus 76 ------~~~~a~~~~gv~~~v~~Ss~~~~~~~~--------~~~~~~~~~-~~~~~~~~e~~l~----~~~~~~tivRp~ 136 (208)
.+.+++++.+++||||+||.++|+... +..+...+. .|. .+|++++ +.+++++++||+
T Consensus 85 n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~---~~E~~~~~~~~~~g~~~~ilRp~ 161 (311)
T 3m2p_A 85 NEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEKELPLPDLMYGVSKL---ACEHIGNIYSRKKGLCIKNLRFA 161 (311)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTTSCCCCSSHHHHHHH---HHHHHHHHHHHHSCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCCCCCCCchhHHHHH---HHHHHHHHHHHHcCCCEEEEeeC
Confidence 134567788999999999998886321 112222111 222 3455554 379999999999
Q ss_pred ccccCCCC--------------ccceee-ecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHHH
Q 028525 137 VLQNTPGG--------------KQGFQF-EEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKCFS 200 (208)
Q Consensus 137 ~~~~~~~~--------------~~~~~~-~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~ 200 (208)
.+++.... +....+ +.+.....+++++|+|++++.+++++. .+++||++++. .+..|+++.+.
T Consensus 162 ~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~-~~~~~~i~~~~~~s~~e~~~~i~ 240 (311)
T 3m2p_A 162 HLYGFNEKNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEK-VSGTFNIGSGDALTNYEVANTIN 240 (311)
T ss_dssp EEECSCC--CCHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTCTT-CCEEEEECCSCEECHHHHHHHHH
T ss_pred ceeCcCCCCCCHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhcCC-CCCeEEeCCCCcccHHHHHHHHH
Confidence 99875432 111212 334445678999999999999998776 68999999876 49999999999
Q ss_pred HHhhhc
Q 028525 201 RLMEKT 206 (208)
Q Consensus 201 ~~~~~~ 206 (208)
+..+.+
T Consensus 241 ~~~g~~ 246 (311)
T 3m2p_A 241 NAFGNK 246 (311)
T ss_dssp HHTTCT
T ss_pred HHhCCC
Confidence 998875
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=179.01 Aligned_cols=197 Identities=10% Similarity=0.094 Sum_probs=146.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCc----hhhh---hhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDK----RNAM---ESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSEG--- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~----~~~~---~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~--- 75 (208)
++||+||++|+++|+++||+|++++|+. ++.. .+...+++++.+|++|++++.++++ ++|+||++++.
T Consensus 17 GatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~a~~~n~ 96 (346)
T 3i6i_A 17 GATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVSTVGGESI 96 (346)
T ss_dssp CTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEECCCGGGG
T ss_pred CCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEECCchhhH
Confidence 4699999999999999999999999987 2221 2224579999999999999999999 99999988432
Q ss_pred ----chhhhhhhcC-CCeEEEeceeeec-cCCCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCCc----
Q 028525 76 ----FISNAGSLKG-VQHVILLSQLSVY-RGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGK---- 145 (208)
Q Consensus 76 ----~~~~a~~~~g-v~~~v~~Ss~~~~-~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~---- 145 (208)
.+.+++++.| +++||+ |+.+.. ....+..+...+. ..+..+|+++++.+++|+++|||.+++.....
T Consensus 97 ~~~~~l~~aa~~~g~v~~~v~-S~~g~~~~e~~~~~p~~~y~--~sK~~~e~~l~~~g~~~tivrpg~~~g~~~~~~~~~ 173 (346)
T 3i6i_A 97 LDQIALVKAMKAVGTIKRFLP-SEFGHDVNRADPVEPGLNMY--REKRRVRQLVEESGIPFTYICCNSIASWPYYNNIHP 173 (346)
T ss_dssp GGHHHHHHHHHHHCCCSEEEC-SCCSSCTTTCCCCTTHHHHH--HHHHHHHHHHHHTTCCBEEEECCEESSCCCSCC---
T ss_pred HHHHHHHHHHHHcCCceEEee-cccCCCCCccCcCCCcchHH--HHHHHHHHHHHHcCCCEEEEEecccccccCcccccc
Confidence 2567788888 999986 655432 1122222222211 12235788999999999999999987643111
Q ss_pred --------cceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEee-CC-cchhhHHHHHHHHhhhcC
Q 028525 146 --------QGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVN-GE-EKVSDWKKCFSRLMEKTG 207 (208)
Q Consensus 146 --------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~-~~-~~~~e~~~~~~~~~~~~~ 207 (208)
....++.+.....+++.+|+|++++.++.++...++.|++++ +. .+..|+++.+++++|++.
T Consensus 174 ~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l~~~~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~ 245 (346)
T 3i6i_A 174 SEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTL 245 (346)
T ss_dssp --CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHTTCGGGTTEEEECCCGGGEECHHHHHHHHHHHHTSCC
T ss_pred ccccCCCceEEEccCCCceEEecCHHHHHHHHHHHHhCccccCeEEEEeCCCCCCCHHHHHHHHHHHHCCCC
Confidence 111133344456789999999999999998887789999984 33 599999999999998753
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-25 Score=163.85 Aligned_cols=178 Identities=13% Similarity=0.090 Sum_probs=133.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC------------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG------------ 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~------------ 75 (208)
+.||+||++++++|+++||+|++++|++++.......+++++.+|++|++++.++++++|+||++++.
T Consensus 10 GatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~n~~ 89 (206)
T 1hdo_A 10 GATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSE 89 (206)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTCCSCCCHHHH
T ss_pred cCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCCCCCCccchHHH
Confidence 57999999999999999999999999987754433457999999999999999999999999987321
Q ss_pred ---chhhhhhhcCCCeEEEeceeeeccCCCCcc-cccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCCccceeee
Q 028525 76 ---FISNAGSLKGVQHVILLSQLSVYRGSGGIQ-ALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFE 151 (208)
Q Consensus 76 ---~~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~-~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~ 151 (208)
.+.+++++.++++||++||.+++....... +...+ ...+..+|++++..+++|+++||+.+.+.+..+. +...
T Consensus 90 ~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~y--~~~K~~~e~~~~~~~i~~~~lrp~~~~~~~~~~~-~~~~ 166 (206)
T 1hdo_A 90 GARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAV--TDDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGA-YTVT 166 (206)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSCGGGHHH--HHHHHHHHHHHHHTCSEEEEECCSEEECCCCCSC-CEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEeeeeeccCcccccccchhH--HHHHHHHHHHHHhCCCCEEEEeCCcccCCCCCcc-eEec
Confidence 134567778999999999998876432111 11111 1112256888888999999999999854443332 2111
Q ss_pred cCCcC-CCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC
Q 028525 152 EGCAA-NGSLSKEDAAFICVEALESIPQTGLIFEVVNG 188 (208)
Q Consensus 152 ~~~~~-~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~ 188 (208)
..... ..+++.+|+|++++.+++++...++.|+++++
T Consensus 167 ~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~~~~i~~g 204 (206)
T 1hdo_A 167 LDGRGPSRVISKHDLGHFMLRCLTTDEYDGHSTYPSHQ 204 (206)
T ss_dssp SSSCSSCSEEEHHHHHHHHHHTTSCSTTTTCEEEEECC
T ss_pred ccCCCCCCccCHHHHHHHHHHHhcCccccccceeeecc
Confidence 11122 57899999999999999988777899999865
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-25 Score=175.87 Aligned_cols=190 Identities=15% Similarity=0.105 Sum_probs=143.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC------------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG------------ 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~------------ 75 (208)
++||+||++|+++|+++||+|++++|+.++ .+++++.+|++|++++.++++++|+||++++.
T Consensus 26 GatG~iG~~l~~~L~~~G~~V~~~~r~~~~------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~ 99 (347)
T 4id9_A 26 GSAGRVGRAVVAALRTQGRTVRGFDLRPSG------TGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFMSWAPADRDRMF 99 (347)
T ss_dssp TTTSHHHHHHHHHHHHTTCCEEEEESSCCS------SCCSEEESCTTCHHHHHHHHTTCSEEEECCCCCCSSGGGHHHHH
T ss_pred CCCChHHHHHHHHHHhCCCEEEEEeCCCCC------CCccEEecCcCCHHHHHHHHhCCCEEEECCcccCcchhhHHHHH
Confidence 469999999999999999999999998765 46899999999999999999999999987221
Q ss_pred --------chhhhhhhcCCCeEEEeceeeeccCC----------CCcccccchh-HHHhHHHHHHHHH----hcCCCEEE
Q 028525 76 --------FISNAGSLKGVQHVILLSQLSVYRGS----------GGIQALMKGN-ARKLAEQDESMLM----ASGIPYTI 132 (208)
Q Consensus 76 --------~~~~a~~~~gv~~~v~~Ss~~~~~~~----------~~~~~~~~~~-~~~~~~~~e~~l~----~~~~~~ti 132 (208)
.+.+++.+.+++||||+||.++|+.. .+..+...+. .|. .+|++++ ..++++++
T Consensus 100 ~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~Y~~sK~---~~E~~~~~~~~~~~~~~~i 176 (347)
T 4id9_A 100 AVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTEDHPLCPNSPYGLTKL---LGEELVRFHQRSGAMETVI 176 (347)
T ss_dssp HHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTTSCCCCCSHHHHHHH---HHHHHHHHHHHHSSSEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCCCCCCCCChHHHHHH---HHHHHHHHHHHhcCCceEE
Confidence 03456777899999999999988641 1112221111 222 3455443 57999999
Q ss_pred Eeccccc-------------cCC--------------C-----------Cccc-eeeecCCcCCCc----ccHHHHHHHH
Q 028525 133 IRTGVLQ-------------NTP--------------G-----------GKQG-FQFEEGCAANGS----LSKEDAAFIC 169 (208)
Q Consensus 133 vRp~~~~-------------~~~--------------~-----------~~~~-~~~~~~~~~~~~----v~~~Dva~~~ 169 (208)
+||+.++ +.. . .+.. ..++.+.....+ ++++|+|+++
T Consensus 177 lRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~ai 256 (347)
T 4id9_A 177 LRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILARNENGRPFRMHITDTRDMVAGI 256 (347)
T ss_dssp EEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEEEECTTCCBCEECEEEHHHHHHHH
T ss_pred EccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEeCCCCcccCCccCcEeHHHHHHHH
Confidence 9999998 211 0 0111 123334445667 9999999999
Q ss_pred HHHhhCCCCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 170 VEALESIPQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 170 ~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
+.+++++...++.||++++. .+..|+++.+.+.+|.+
T Consensus 257 ~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~ 294 (347)
T 4id9_A 257 LLALDHPEAAGGTFNLGADEPADFAALLPKIAALTGLP 294 (347)
T ss_dssp HHHHHCGGGTTEEEEESCSSCEEHHHHHHHHHHHHCCC
T ss_pred HHHhcCcccCCCeEEECCCCcccHHHHHHHHHHHhCCC
Confidence 99999886678999999876 49999999999998864
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-25 Score=166.18 Aligned_cols=182 Identities=18% Similarity=0.184 Sum_probs=133.6
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc--------hh
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF--------IS 78 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~--------~~ 78 (208)
+++|+||++++++|+++| ++|++++|++++.......+++++.+|++|++++.++++++|+||++.+.. +.
T Consensus 30 GatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~~~~~~~~~~ 109 (236)
T 3qvo_A 30 GAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDLDIQANSVI 109 (236)
T ss_dssp TTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTTHHHHHHHHH
T ss_pred eCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCchhHHHHHHH
Confidence 469999999999999999 999999999988665555689999999999999999999999999773321 45
Q ss_pred hhhhhcCCCeEEEeceeeeccCCCCcc-cccc---hhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCCccceeeecCC
Q 028525 79 NAGSLKGVQHVILLSQLSVYRGSGGIQ-ALMK---GNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGC 154 (208)
Q Consensus 79 ~a~~~~gv~~~v~~Ss~~~~~~~~~~~-~~~~---~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~ 154 (208)
+++++.+++|||++||.+++....... ++.. .........+|++++..++++++||||++++...... .......
T Consensus 110 ~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~vrPg~i~~~~~~~~-~~~~~~~ 188 (236)
T 3qvo_A 110 AAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAVIGEPLKPFRRAADAIEASGLEYTILRPAWLTDEDIIDY-ELTSRNE 188 (236)
T ss_dssp HHHHHTTCCEEEEECCCCC----------------CGGGHHHHHHHHHHHTSCSEEEEEEECEEECCSCCCC-EEECTTS
T ss_pred HHHHHcCCCEEEEEecceecCCCCcccccchhhcccchHHHHHHHHHHHHHCCCCEEEEeCCcccCCCCcce-EEeccCC
Confidence 667888999999999998876322111 0000 0011111246788888999999999999987654332 1122222
Q ss_pred cC-CCcccHHHHHHHHHHHhhCCC-CCCcEEEEeeCCc
Q 028525 155 AA-NGSLSKEDAAFICVEALESIP-QTGLIFEVVNGEE 190 (208)
Q Consensus 155 ~~-~~~v~~~Dva~~~~~~l~~~~-~~~~~~~i~~~~~ 190 (208)
.. ..+++.+|+|++++.++.++. ..++.|+++++..
T Consensus 189 ~~~~~~i~~~DvA~~i~~ll~~~~~~~g~~~~i~~~~~ 226 (236)
T 3qvo_A 189 PFKGTIVSRKSVAALITDIIDKPEKHIGENIGINQPGT 226 (236)
T ss_dssp CCSCSEEEHHHHHHHHHHHHHSTTTTTTEEEEEECSSC
T ss_pred CCCCcEECHHHHHHHHHHHHcCcccccCeeEEecCCCC
Confidence 22 456899999999999999887 6799999997654
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.1e-26 Score=175.60 Aligned_cols=198 Identities=14% Similarity=0.064 Sum_probs=145.8
Q ss_pred Cchhhhc-cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC-CCEEEEcCC----
Q 028525 1 MGPMKKM-KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG-VRSIICPSE---- 74 (208)
Q Consensus 1 ~~~~~~~-~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~-~d~vi~~~~---- 74 (208)
|-+|+.. -++|+||++|+++|+++||+|++++|+.++. ..+++++.+|++|++++.+++++ +|+||++++
T Consensus 1 M~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~~~~~ 76 (286)
T 3gpi_A 1 MSLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPM----PAGVQTLIADVTRPDTLASIVHLRPEILVYCVAASEY 76 (286)
T ss_dssp -CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCC----CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHHHHHH
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcccc----ccCCceEEccCCChHHHHHhhcCCCCEEEEeCCCCCC
Confidence 4444332 1489999999999999999999999987663 35789999999999999999998 999998721
Q ss_pred --C-----------chhhhhhhcCCCeEEEeceeeeccCCC--------CcccccchhHHHhHHHHHHHHHhcCCCEEEE
Q 028525 75 --G-----------FISNAGSLKGVQHVILLSQLSVYRGSG--------GIQALMKGNARKLAEQDESMLMASGIPYTII 133 (208)
Q Consensus 75 --~-----------~~~~a~~~~gv~~~v~~Ss~~~~~~~~--------~~~~~~~~~~~~~~~~~e~~l~~~~~~~tiv 133 (208)
. .+.+++.+.+++||||+||.++|+... +..+...+.. .+..+|++ +.. ++++++
T Consensus 77 ~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~--sK~~~E~~-~~~-~~~~il 152 (286)
T 3gpi_A 77 SDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDEDTPPIAKDFSGK--RMLEAEAL-LAA-YSSTIL 152 (286)
T ss_dssp C-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTTSCCCCCSHHHH--HHHHHHHH-GGG-SSEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCCCCCCCCChhhH--HHHHHHHH-Hhc-CCeEEE
Confidence 0 135567778999999999999886321 1112221111 12246777 666 999999
Q ss_pred eccccccCCCCc------cceeeecCCcCCCcccHHHHHHHHHHHhhCC--CCCCcEEEEeeCC-cchhhHHHHHHHHhh
Q 028525 134 RTGVLQNTPGGK------QGFQFEEGCAANGSLSKEDAAFICVEALESI--PQTGLIFEVVNGE-EKVSDWKKCFSRLME 204 (208)
Q Consensus 134 Rp~~~~~~~~~~------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~--~~~~~~~~i~~~~-~~~~e~~~~~~~~~~ 204 (208)
||+.+++..... ....++.+.....+++++|+|++++.+++++ ...+++||++++. .+..|+++.+.+.+|
T Consensus 153 R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g 232 (286)
T 3gpi_A 153 RFSGIYGPGRLRMIRQAQTPEQWPARNAWTNRIHRDDGAAFIAYLIQQRSHAVPERLYIVTDNQPLPVHDLLRWLADRQG 232 (286)
T ss_dssp EECEEEBTTBCHHHHHTTCGGGSCSSBCEECEEEHHHHHHHHHHHHHHHTTSCCCSEEEECCSCCEEHHHHHHHHHHHTT
T ss_pred ecccccCCCchhHHHHHHhcccCCCcCceeEEEEHHHHHHHHHHHHhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHcC
Confidence 999998643221 0011122333467899999999999999886 5568999999866 599999999999998
Q ss_pred hc
Q 028525 205 KT 206 (208)
Q Consensus 205 ~~ 206 (208)
.+
T Consensus 233 ~~ 234 (286)
T 3gpi_A 233 IA 234 (286)
T ss_dssp CC
T ss_pred CC
Confidence 75
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=174.34 Aligned_cols=194 Identities=13% Similarity=0.034 Sum_probs=142.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC--C-------c--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE--G-------F-- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~--~-------~-- 76 (208)
++||+||++|+++|+++||+|++++|+.++.......+++++.+|++|++++.++++++|+||++++ . .
T Consensus 36 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~ 115 (379)
T 2c5a_A 36 GAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHS 115 (379)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCCCCCHHHHTTCHH
T ss_pred CCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECceecCcccccccCHH
Confidence 4699999999999999999999999987664333334789999999999999999999999998722 1 0
Q ss_pred ------------hhhhhhhcCCCeEEEeceeeeccCCC---------------Ccccccchh-HHHhHHHHHHHHH----
Q 028525 77 ------------ISNAGSLKGVQHVILLSQLSVYRGSG---------------GIQALMKGN-ARKLAEQDESMLM---- 124 (208)
Q Consensus 77 ------------~~~a~~~~gv~~~v~~Ss~~~~~~~~---------------~~~~~~~~~-~~~~~~~~e~~l~---- 124 (208)
+.+++.+.++++|||+||.++|+... +..+...+. .|. .+|.+++
T Consensus 116 ~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y~~sK~---~~E~~~~~~~~ 192 (379)
T 2c5a_A 116 VIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKL---ATEELCKHYNK 192 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCChhHHHHH---HHHHHHHHHHH
Confidence 23456678999999999998876311 111111111 222 3455443
Q ss_pred hcCCCEEEEeccccccCCCCc------------------cc-ee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEE
Q 028525 125 ASGIPYTIIRTGVLQNTPGGK------------------QG-FQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFE 184 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~------------------~~-~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~ 184 (208)
+.+++++++||+.+++..... .. +. ++.+.....+++++|+|++++.+++++ .++.||
T Consensus 193 ~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~--~~~~~n 270 (379)
T 2c5a_A 193 DFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD--FREPVN 270 (379)
T ss_dssp HHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSS--CCSCEE
T ss_pred HHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHHHHHhhcc--CCCeEE
Confidence 469999999999998743211 00 11 222334467899999999999999876 467899
Q ss_pred EeeCC-cchhhHHHHHHHHhhhc
Q 028525 185 VVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 185 i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
++++. .+..|+++.+.+..+.+
T Consensus 271 i~~~~~~s~~e~~~~i~~~~g~~ 293 (379)
T 2c5a_A 271 IGSDEMVSMNEMAEMVLSFEEKK 293 (379)
T ss_dssp ECCCCCEEHHHHHHHHHHTTTCC
T ss_pred eCCCCccCHHHHHHHHHHHhCCC
Confidence 99866 49999999999998864
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=174.61 Aligned_cols=194 Identities=12% Similarity=0.148 Sum_probs=145.7
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCchhh--hhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC---------
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKRNA--MESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG--------- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~--~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~--------- 75 (208)
+.||+||++++++|+++| |+|++++|++++. ..+...+++++.+|++|++++.++++++|+||++++.
T Consensus 12 GatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~ 91 (299)
T 2wm3_A 12 GGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTNYWESCSQEQE 91 (299)
T ss_dssp TTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCHHHHTCHHHH
T ss_pred CCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCCCCccccchHH
Confidence 569999999999999998 9999999997653 2222357899999999999999999999999987431
Q ss_pred -----chhhhhhhcCCCeEEEeceeeeccCCC--CcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCC----
Q 028525 76 -----FISNAGSLKGVQHVILLSQLSVYRGSG--GIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGG---- 144 (208)
Q Consensus 76 -----~~~~a~~~~gv~~~v~~Ss~~~~~~~~--~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~---- 144 (208)
.+.+++++.|+++||++|+.+++.... +..+|.. . +..+|+++++.+++|+++||++++++...
T Consensus 92 ~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~~~~~~~y~~--s---K~~~e~~~~~~gi~~~ilrp~~~~~~~~~~~~~ 166 (299)
T 2wm3_A 92 VKQGKLLADLARRLGLHYVVYSGLENIKKLTAGRLAAAHFD--G---KGEVEEYFRDIGVPMTSVRLPCYFENLLSHFLP 166 (299)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCCCHHHHTTTSCCCHHHH--H---HHHHHHHHHHHTCCEEEEECCEEGGGGGTTTCC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCccccccCCCcccCchhh--H---HHHHHHHHHHCCCCEEEEeecHHhhhchhhcCC
Confidence 134567788999999988877664221 1122221 2 22568889989999999999998864211
Q ss_pred -----ccc--eeeecCCcCCCcccHHHHHHHHHHHhhCCC-CCCcEEEEeeCCcchhhHHHHHHHHhhhc
Q 028525 145 -----KQG--FQFEEGCAANGSLSKEDAAFICVEALESIP-QTGLIFEVVNGEEKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 145 -----~~~--~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~i~~~~~~~~e~~~~~~~~~~~~ 206 (208)
+.. +.+..++....+++++|+|++++.++.++. ..++.|++++...+..|+++.+.+.+|++
T Consensus 167 ~~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~g~~~~~~g~~~s~~e~~~~~~~~~g~~ 236 (299)
T 2wm3_A 167 QKAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEKYVGQNIGLSTCRHTAEEYAALLTKHTRKV 236 (299)
T ss_dssp EECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSHHHHTTCEEECCSEEECHHHHHHHHHHHHSSC
T ss_pred cccCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcChhhhCCeEEEeeeccCCHHHHHHHHHHHHCCC
Confidence 111 112223344577899999999999998753 46789999864459999999999999875
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=162.22 Aligned_cols=178 Identities=10% Similarity=0.052 Sum_probs=129.5
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC-----------
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG----------- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~----------- 75 (208)
-++||+||++++++|+++||+|++++|++++.......+++++.+|++|+++ +++.++|+||++++.
T Consensus 6 tGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~~~~~~~~n~ 83 (224)
T 3h2s_A 6 LGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTE--ADLDSVDAVVDALSVPWGSGRGYLHL 83 (224)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCH--HHHTTCSEEEECCCCCTTSSCTHHHH
T ss_pred EcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccH--hhcccCCEEEECCccCCCcchhhHHH
Confidence 3679999999999999999999999999988766666789999999999887 889999999988322
Q ss_pred ----chhhhhhhcCCCeEEEeceeeeccCCCC--------------cccccchhHHHhHHHHHHHHHhcCCCEEEEeccc
Q 028525 76 ----FISNAGSLKGVQHVILLSQLSVYRGSGG--------------IQALMKGNARKLAEQDESMLMASGIPYTIIRTGV 137 (208)
Q Consensus 76 ----~~~~a~~~~gv~~~v~~Ss~~~~~~~~~--------------~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~ 137 (208)
.+.+++++.+ +|||++||.+++..... ...|.. .|...+..+.+.+..+++|+++||++
T Consensus 84 ~~~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--sK~~~e~~~~~~~~~~i~~~ivrp~~ 160 (224)
T 3h2s_A 84 DFATHLVSLLRNSD-TLAVFILGSASLAMPGADHPMILDFPESAASQPWYDG--ALYQYYEYQFLQMNANVNWIGISPSE 160 (224)
T ss_dssp HHHHHHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGGGGCCGGGGGSTTHHH--HHHHHHHHHHHTTCTTSCEEEEEECS
T ss_pred HHHHHHHHHHHHcC-CcEEEEecceeeccCCCCccccccCCCCCccchhhHH--HHHHHHHHHHHHhcCCCcEEEEcCcc
Confidence 1345677788 99999999865432111 112211 22222222222335799999999999
Q ss_pred cccCCCCccceeee-----cCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCc
Q 028525 138 LQNTPGGKQGFQFE-----EGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEE 190 (208)
Q Consensus 138 ~~~~~~~~~~~~~~-----~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~ 190 (208)
+++...... +... .+.....+++++|+|++++.+++++...++.|++++.+.
T Consensus 161 v~g~~~~~~-~~~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~~~g~~~~~~~~~~ 217 (224)
T 3h2s_A 161 AFPSGPATS-YVAGKDTLLVGEDGQSHITTGNMALAILDQLEHPTAIRDRIVVRDADL 217 (224)
T ss_dssp BCCCCCCCC-EEEESSBCCCCTTSCCBCCHHHHHHHHHHHHHSCCCTTSEEEEEECC-
T ss_pred ccCCCcccC-ceecccccccCCCCCceEeHHHHHHHHHHHhcCccccCCEEEEecCcc
Confidence 986422211 2221 122336789999999999999999998999999997553
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-25 Score=172.55 Aligned_cols=195 Identities=13% Similarity=0.102 Sum_probs=143.2
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC-----------
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG----------- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~----------- 75 (208)
-++||+||++|+++|+++||+|++++|+.+........+++++.+|+.|.+ +.+++++ |+|||+++.
T Consensus 6 tGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~~~~-d~vih~A~~~~~~~~~~~~~ 83 (312)
T 3ko8_A 6 TGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYS-WGAGIKG-DVVFHFAANPEVRLSTTEPI 83 (312)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTT-TTTTCCC-SEEEECCSSCSSSGGGSCHH
T ss_pred ECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhcCCCceEEECccccHH-HHhhcCC-CEEEECCCCCCchhhhhCHH
Confidence 367999999999999999999999999887655444568999999999998 8888888 999987321
Q ss_pred -----------chhhhhhhcCCCeEEEeceeeeccCCC--------Ccccccchh-HHHhHHHHHHHHH----hcCCCEE
Q 028525 76 -----------FISNAGSLKGVQHVILLSQLSVYRGSG--------GIQALMKGN-ARKLAEQDESMLM----ASGIPYT 131 (208)
Q Consensus 76 -----------~~~~a~~~~gv~~~v~~Ss~~~~~~~~--------~~~~~~~~~-~~~~~~~~e~~l~----~~~~~~t 131 (208)
.+.+++.+.++++|||+||.++|+... +..+...+. .|. .+|.+++ +.+++++
T Consensus 84 ~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~sK~---~~e~~~~~~~~~~g~~~~ 160 (312)
T 3ko8_A 84 VHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKA---AGEVMCATYARLFGVRCL 160 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHH---HHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCCCCCCCCChHHHHHH---HHHHHHHHHHHHhCCCEE
Confidence 023566778999999999999886321 112222211 222 2344443 4699999
Q ss_pred EEeccccccCCCCc--------------cce-eeecCCcCCCcccHHHHHHHHHHHhhC---CCCCCcEEEEeeCC-cch
Q 028525 132 IIRTGVLQNTPGGK--------------QGF-QFEEGCAANGSLSKEDAAFICVEALES---IPQTGLIFEVVNGE-EKV 192 (208)
Q Consensus 132 ivRp~~~~~~~~~~--------------~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~---~~~~~~~~~i~~~~-~~~ 192 (208)
++||+.+++..... ..+ .++.+.....+++++|+|++++.++++ +...+++||++++. .+.
T Consensus 161 ~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~~~~~s~ 240 (312)
T 3ko8_A 161 AVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRV 240 (312)
T ss_dssp EEEECEEECTTCCSSHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHHSCCSEEEEEESCSSCEEH
T ss_pred EEeeccccCcCCCCChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhccccCCCCcEEEEcCCCceeH
Confidence 99999998753221 111 122333446789999999999999987 45567899999876 499
Q ss_pred hhHHHHHHHHhhhc
Q 028525 193 SDWKKCFSRLMEKT 206 (208)
Q Consensus 193 ~e~~~~~~~~~~~~ 206 (208)
.|+++.+.+.+|.+
T Consensus 241 ~e~~~~i~~~~g~~ 254 (312)
T 3ko8_A 241 LDIAQIVAEVLGLR 254 (312)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999998864
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=161.79 Aligned_cols=177 Identities=12% Similarity=0.101 Sum_probs=122.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC------------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG------------ 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~------------ 75 (208)
++||+||++++++|+++||+|++++|++++..... .+++++.+|++|+++ +++.++|+||++++.
T Consensus 7 GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~~~~~~~~~~~ 83 (221)
T 3ew7_A 7 GATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTL--SDLSDQNVVVDAYGISPDEAEKHVTSL 83 (221)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCH--HHHTTCSEEEECCCSSTTTTTSHHHHH
T ss_pred cCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhh--hhhcCCCEEEECCcCCccccchHHHHH
Confidence 57999999999999999999999999988866544 679999999999887 889999999988321
Q ss_pred -chhhhhhhcCCCeEEEeceeeeccCCC------------CcccccchhHHHhHHHHHHHHH--hcCCCEEEEecccccc
Q 028525 76 -FISNAGSLKGVQHVILLSQLSVYRGSG------------GIQALMKGNARKLAEQDESMLM--ASGIPYTIIRTGVLQN 140 (208)
Q Consensus 76 -~~~~a~~~~gv~~~v~~Ss~~~~~~~~------------~~~~~~~~~~~~~~~~~e~~l~--~~~~~~tivRp~~~~~ 140 (208)
.+.+++++.+++|||++||.+++.... +...|.. .|...+. ...++ ..+++|+++||+.+++
T Consensus 84 ~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~--~k~~~e~-~~~~~~~~~gi~~~ivrp~~v~g 160 (221)
T 3ew7_A 84 DHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPT--ARAQAKQ-LEHLKSHQAEFSWTYISPSAMFE 160 (221)
T ss_dssp HHHHHHHCSCCSSEEEEECCCC-------------------CCCSCC--HHHHHHH-HHHHHTTTTTSCEEEEECSSCCC
T ss_pred HHHHHHHHhcCCceEEEEecceEEEcCCCCccccccCCCCCHHHHHH--HHHHHHH-HHHHHhhccCccEEEEeCcceec
Confidence 135667778899999999987643211 1222333 3332222 23466 6899999999999986
Q ss_pred CCCCccceeee-----cCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCc
Q 028525 141 TPGGKQGFQFE-----EGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEE 190 (208)
Q Consensus 141 ~~~~~~~~~~~-----~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~ 190 (208)
.......+... .......+++++|+|++++.+++++...++.|++++...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~g~~~~~~~~~~ 215 (221)
T 3ew7_A 161 PGERTGDYQIGKDHLLFGSDGNSFISMEDYAIAVLDEIERPNHLNEHFTVAGKLE 215 (221)
T ss_dssp CC---------------------CCCHHHHHHHHHHHHHSCSCTTSEEECCC---
T ss_pred CCCccCceEeccccceecCCCCceEeHHHHHHHHHHHHhCccccCCEEEECCCCc
Confidence 42111111111 111224689999999999999999999999999996554
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=169.48 Aligned_cols=196 Identities=14% Similarity=0.115 Sum_probs=141.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh------h---hhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN------A---MESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG--- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~------~---~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~--- 75 (208)
++||++|++++++|+++||+|++++|+.+. . ..+...+++++.+|++|++++.++++++|+||++++.
T Consensus 11 GatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~~a~~~~~ 90 (308)
T 1qyc_A 11 GATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVISTVGSLQI 90 (308)
T ss_dssp STTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEECCCGGGS
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEECCcchhh
Confidence 579999999999999999999999998532 1 1122457999999999999999999999999988432
Q ss_pred ----chhhhhhhcC-CCeEEEeceeeeccC-CCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCC------
Q 028525 76 ----FISNAGSLKG-VQHVILLSQLSVYRG-SGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPG------ 143 (208)
Q Consensus 76 ----~~~~a~~~~g-v~~~v~~Ss~~~~~~-~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~------ 143 (208)
.+.++++++| ++|||+ |+.+.... ..+..+... ....+..+|+++++.+++|+++||+.+++...
T Consensus 91 ~~~~~l~~aa~~~g~v~~~v~-S~~g~~~~~~~~~~p~~~--~y~sK~~~e~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 167 (308)
T 1qyc_A 91 ESQVNIIKAIKEVGTVKRFFP-SEFGNDVDNVHAVEPAKS--VFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQA 167 (308)
T ss_dssp GGGHHHHHHHHHHCCCSEEEC-SCCSSCTTSCCCCTTHHH--HHHHHHHHHHHHHHHTCCBEEEECCEEHHHHTTTTTCT
T ss_pred hhHHHHHHHHHhcCCCceEee-cccccCccccccCCcchh--HHHHHHHHHHHHHhcCCCeEEEEeceeccccccccccc
Confidence 2456788888 999984 65543221 111112111 11222357889998999999999998765210
Q ss_pred -----Ccccee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC-C-cchhhHHHHHHHHhhhc
Q 028525 144 -----GKQGFQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNG-E-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 144 -----~~~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~-~-~~~~e~~~~~~~~~~~~ 206 (208)
....+. ++.+.....+++.+|+|++++.+++++...++.|++.++ . .+.+|+++++++++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~ 238 (308)
T 1qyc_A 168 GLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKT 238 (308)
T ss_dssp TCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSC
T ss_pred cccCCCCCceEEecCCCceEEEecHHHHHHHHHHHHhCccccCeEEEEeCCCCccCHHHHHHHHHHHhCCC
Confidence 111111 223344467789999999999999887767888888743 3 59999999999999876
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-24 Score=169.91 Aligned_cols=195 Identities=10% Similarity=0.059 Sum_probs=141.3
Q ss_pred cccCccHHHHHHHHHhCC--CcEEEEEcCchh--h---hhhc-CCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCCC--
Q 028525 8 KRKKMNFRMVILSLIVKR--TRIKALVKDKRN--A---MESF-GTYVESMAGDASNKKFLKTALRG--VRSIICPSEG-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~--~---~~~~-~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~~-- 75 (208)
++||+||++|+++|+++| ++|++++|.... . .... ..+++++.+|++|++++.+++++ +|+||++++.
T Consensus 31 GatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~ 110 (346)
T 4egb_A 31 GGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQVIVNFAAESH 110 (346)
T ss_dssp TTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCEEEECCCCC-
T ss_pred CCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCEEEECCcccc
Confidence 469999999999999999 677777776422 1 1111 24799999999999999999987 9999987221
Q ss_pred --------------------chhhhhhhcCCCeEEEeceeeeccCCC---------Ccccccchh-HHHhHHHHHHHHH-
Q 028525 76 --------------------FISNAGSLKGVQHVILLSQLSVYRGSG---------GIQALMKGN-ARKLAEQDESMLM- 124 (208)
Q Consensus 76 --------------------~~~~a~~~~gv~~~v~~Ss~~~~~~~~---------~~~~~~~~~-~~~~~~~~e~~l~- 124 (208)
.+.+++.+.+++||||+||.++|+... +..+...+. .|. .+|.+++
T Consensus 111 ~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~~~~~p~~~Y~~sK~---~~E~~~~~ 187 (346)
T 4egb_A 111 VDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKA---SADMIALA 187 (346)
T ss_dssp --------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTTSCCCCCSHHHHHHH---HHHHHHHH
T ss_pred hhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCCCCCCCCChhHHHHH---HHHHHHHH
Confidence 034567788999999999998886321 111211111 222 3455544
Q ss_pred ---hcCCCEEEEeccccccCCCCc--------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEe
Q 028525 125 ---ASGIPYTIIRTGVLQNTPGGK--------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVV 186 (208)
Q Consensus 125 ---~~~~~~tivRp~~~~~~~~~~--------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~ 186 (208)
+.+++++++||+.+++..... ..+. ++.+.....+++++|+|++++.+++++. .+++||++
T Consensus 188 ~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~g~~~~i~ 266 (346)
T 4egb_A 188 YYKTYQLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGR-VGEVYNIG 266 (346)
T ss_dssp HHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHHHHHCC-TTCEEEEC
T ss_pred HHHHhCCCEEEEeecceeCcCCCccchHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHHHhcCC-CCCEEEEC
Confidence 369999999999998753211 1111 2333444678999999999999998776 68899999
Q ss_pred eCC-cchhhHHHHHHHHhhhc
Q 028525 187 NGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 187 ~~~-~~~~e~~~~~~~~~~~~ 206 (208)
++. .+..|+++.+.+..|.+
T Consensus 267 ~~~~~s~~e~~~~i~~~~g~~ 287 (346)
T 4egb_A 267 GNNEKTNVEVVEQIITLLGKT 287 (346)
T ss_dssp CSCCEEHHHHHHHHHHHHTCC
T ss_pred CCCceeHHHHHHHHHHHhCCC
Confidence 877 59999999999998865
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-24 Score=170.05 Aligned_cols=193 Identities=16% Similarity=0.141 Sum_probs=143.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh--hhhcC-CceEEEEcC-CCCHHHHHHHhcCCCEEEEcCCCc-------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA--MESFG-TYVESMAGD-ASNKKFLKTALRGVRSIICPSEGF------- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~--~~~~~-~~v~~v~~D-l~d~~~l~~~~~~~d~vi~~~~~~------- 76 (208)
+.||+||++|+++|+++||+|++++|++++. ..+.. .+++++.+| ++|++++.++++++|+||++++..
T Consensus 12 GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~~~~~~~~~ 91 (352)
T 1xgk_A 12 GATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTSQAGDEIAI 91 (352)
T ss_dssp STTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCSTTSCHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCCCCcHHHHH
Confidence 4699999999999999999999999987653 22222 368999999 999999999999999999773221
Q ss_pred ---hhhhhhhcC-CCeEEEeceee--eccCCCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCCc-----
Q 028525 77 ---ISNAGSLKG-VQHVILLSQLS--VYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGK----- 145 (208)
Q Consensus 77 ---~~~a~~~~g-v~~~v~~Ss~~--~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~----- 145 (208)
+.+++++.| ++|||++||.+ .++. .+..+|.. .|. .+|++++..+++++++||+++.......
T Consensus 92 ~~~l~~aa~~~g~v~~~V~~SS~~~~~~~~-~~~~~y~~--sK~---~~E~~~~~~gi~~~ivrpg~~g~~~~~~~~~~~ 165 (352)
T 1xgk_A 92 GKDLADAAKRAGTIQHYIYSSMPDHSLYGP-WPAVPMWA--PKF---TVENYVRQLGLPSTFVYAGIYNNNFTSLPYPLF 165 (352)
T ss_dssp HHHHHHHHHHHSCCSEEEEEECCCGGGTSS-CCCCTTTH--HHH---HHHHHHHTSSSCEEEEEECEEGGGCBSSSCSSC
T ss_pred HHHHHHHHHHcCCccEEEEeCCccccccCC-CCCccHHH--HHH---HHHHHHHHcCCCEEEEecceecCCchhcccccc
Confidence 356677888 99999999986 3322 22234432 232 5688898889999999999764332110
Q ss_pred ------c-cee---eecCCcCCCcccH-HHHHHHHHHHhhCCC--CCCcEEEEeeCCcchhhHHHHHHHHhhhc
Q 028525 146 ------Q-GFQ---FEEGCAANGSLSK-EDAAFICVEALESIP--QTGLIFEVVNGEEKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 146 ------~-~~~---~~~~~~~~~~v~~-~Dva~~~~~~l~~~~--~~~~~~~i~~~~~~~~e~~~~~~~~~~~~ 206 (208)
. ... ...++....+++. +|+|++++.+++++. ..++.|+++++..+..|+++.+.+.+|++
T Consensus 166 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~~~~~~~~g~~~~l~~~~~s~~e~~~~i~~~~G~~ 239 (352)
T 1xgk_A 166 QMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGHRIALTFETLSPVQVCAAFSRALNRR 239 (352)
T ss_dssp BEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHHHTTCEEEECSEEECHHHHHHHHHHHHTSC
T ss_pred cccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHhCCchhhCCeEEEEecCCCCHHHHHHHHHHHHCCC
Confidence 0 010 1113334567898 899999999998753 36899999965569999999999999875
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.8e-24 Score=168.92 Aligned_cols=190 Identities=11% Similarity=0.029 Sum_probs=138.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchh----hhhh---c----CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC--C
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRN----AMES---F----GTYVESMAGDASNKKFLKTALRGVRSIICPSE--G 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~----~~~~---~----~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~--~ 75 (208)
+||+||++|+++|+++||+|++++|+.+. .... . ..+++++.+|++|.+++.++++++|+||++++ .
T Consensus 35 atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~ 114 (352)
T 1sb8_A 35 VAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGS 114 (352)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSEEEECCSCCC
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCCEEEECCcccC
Confidence 59999999999999999999999997642 1111 1 24789999999999999999999999998732 1
Q ss_pred c--------------------hhhhhhhcCCCeEEEeceeeeccCCC-----------CcccccchhHHHhHHHHHHHHH
Q 028525 76 F--------------------ISNAGSLKGVQHVILLSQLSVYRGSG-----------GIQALMKGNARKLAEQDESMLM 124 (208)
Q Consensus 76 ~--------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~-----------~~~~~~~~~~~~~~~~~e~~l~ 124 (208)
. +.+++...++++||++||.++|+... +..+|.. .|. .+|.+++
T Consensus 115 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~~~~~~~~~Y~~--sK~---~~e~~~~ 189 (352)
T 1sb8_A 115 VPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAV--TKY---VNELYAD 189 (352)
T ss_dssp HHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHH--HHH---HHHHHHH
T ss_pred chhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCCCCCCCCChhHH--HHH---HHHHHHH
Confidence 0 23456677999999999999886321 1122222 222 3455543
Q ss_pred ----hcCCCEEEEeccccccCCCCcc------------------ce-eeecCCcCCCcccHHHHHHHHHHHhhCC-CCCC
Q 028525 125 ----ASGIPYTIIRTGVLQNTPGGKQ------------------GF-QFEEGCAANGSLSKEDAAFICVEALESI-PQTG 180 (208)
Q Consensus 125 ----~~~~~~tivRp~~~~~~~~~~~------------------~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~-~~~~ 180 (208)
+.+++++++||+.+++...... .. .++.+.....+++++|+|++++.++.++ ...+
T Consensus 190 ~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~ 269 (352)
T 1sb8_A 190 VFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARN 269 (352)
T ss_dssp HHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGGGCS
T ss_pred HHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhccccCCC
Confidence 4599999999999987532110 00 1122233357899999999999988763 4568
Q ss_pred cEEEEeeCC-cchhhHHHHHHHHh
Q 028525 181 LIFEVVNGE-EKVSDWKKCFSRLM 203 (208)
Q Consensus 181 ~~~~i~~~~-~~~~e~~~~~~~~~ 203 (208)
++||++++. .+..|+++.+.+..
T Consensus 270 ~~~ni~~~~~~s~~e~~~~i~~~~ 293 (352)
T 1sb8_A 270 QVYNIAVGGRTSLNQLFFALRDGL 293 (352)
T ss_dssp EEEEESCSCCEEHHHHHHHHHHHH
T ss_pred ceEEeCCCCCccHHHHHHHHHHHH
Confidence 999999766 49999999999998
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=168.82 Aligned_cols=196 Identities=10% Similarity=0.060 Sum_probs=142.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCch-hhh---hhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC-------c
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKR-NAM---ESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG-------F 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~-~~~---~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~-------~ 76 (208)
++||++|++++++|+++||+|++++|+++ +.. .+...+++++.+|++|++++.++++++|+||++++. .
T Consensus 18 GatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~ 97 (318)
T 2r6j_A 18 GGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAFPQILDQFK 97 (318)
T ss_dssp TTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCGGGSTTHHH
T ss_pred CCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCchhhhHHHHH
Confidence 46999999999999999999999999875 321 122357999999999999999999999999988431 2
Q ss_pred hhhhhhhcC-CCeEEEeceeeeccC-CCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCC--------CCcc
Q 028525 77 ISNAGSLKG-VQHVILLSQLSVYRG-SGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTP--------GGKQ 146 (208)
Q Consensus 77 ~~~a~~~~g-v~~~v~~Ss~~~~~~-~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~--------~~~~ 146 (208)
+.+++++.| ++|||+ |+.+.... ..+..+... ....+..+|+++++.+++|+++||+.+++.. ....
T Consensus 98 l~~aa~~~g~v~~~v~-S~~g~~~~~~~~~~p~~~--~y~sK~~~e~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~ 174 (318)
T 2r6j_A 98 ILEAIKVAGNIKRFLP-SDFGVEEDRINALPPFEA--LIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRPYDPKD 174 (318)
T ss_dssp HHHHHHHHCCCCEEEC-SCCSSCTTTCCCCHHHHH--HHHHHHHHHHHHHHTTCCBEEEECCEEHHHHHHHHHCTTCCCS
T ss_pred HHHHHHhcCCCCEEEe-eccccCcccccCCCCcch--hHHHHHHHHHHHHhcCCCeEEEEcceehhhhhhhhccccCCCC
Confidence 456788888 999985 55442211 111111111 1122235788999999999999999876421 0111
Q ss_pred cee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEee-CC-cchhhHHHHHHHHhhhc
Q 028525 147 GFQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVN-GE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 147 ~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~-~~-~~~~e~~~~~~~~~~~~ 206 (208)
... ++.+.....+++.+|+|++++.++.++...++.|++.+ +. .+..|+++.+++++|++
T Consensus 175 ~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~ 237 (318)
T 2r6j_A 175 EITVYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKK 237 (318)
T ss_dssp EEEEETTSCCEEEEECHHHHHHHHHHHTTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTCC
T ss_pred ceEEecCCCceeeEeeHHHHHHHHHHHhcCccccCeEEEecCCCCccCHHHHHHHHHHHhCCC
Confidence 122 23334456789999999999999988776788888874 34 59999999999999875
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.1e-24 Score=158.73 Aligned_cols=177 Identities=16% Similarity=0.107 Sum_probs=134.1
Q ss_pred cccCccHHHHHHHHH-hCCCcEEEEEcCch-hhhhh--cCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC------ch
Q 028525 8 KRKKMNFRMVILSLI-VKRTRIKALVKDKR-NAMES--FGTYVESMAGDASNKKFLKTALRGVRSIICPSEG------FI 77 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll-~~g~~V~~~~R~~~-~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~------~~ 77 (208)
+++|+||++++++|+ ++||+|++++|+++ +..+. ...+++++.+|++|++++.++++++|+||++++. .+
T Consensus 12 Gasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n~~~~~~ 91 (221)
T 3r6d_A 12 GAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESGSDMASI 91 (221)
T ss_dssp STTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCHHHHHHH
T ss_pred eCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCChhHHHH
Confidence 469999999999999 89999999999988 65544 4568999999999999999999999999988543 24
Q ss_pred hhhhhhcCCCeEEEeceeeeccCCCCcc----------cccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCCccc
Q 028525 78 SNAGSLKGVQHVILLSQLSVYRGSGGIQ----------ALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQG 147 (208)
Q Consensus 78 ~~a~~~~gv~~~v~~Ss~~~~~~~~~~~----------~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~ 147 (208)
.+++++.+++|||++||.+++....... +|.. .+..+|.+++..+++|++||||++++.+.....
T Consensus 92 ~~~~~~~~~~~iv~iSs~~~~~~~~~~~~~~~~~~~~~~y~~-----~K~~~e~~~~~~~i~~~~vrpg~v~~~~~~~~~ 166 (221)
T 3r6d_A 92 VKALSRXNIRRVIGVSMAGLSGEFPVALEKWTFDNLPISYVQ-----GERQARNVLRESNLNYTILRLTWLYNDPEXTDY 166 (221)
T ss_dssp HHHHHHTTCCEEEEEEETTTTSCSCHHHHHHHHHTSCHHHHH-----HHHHHHHHHHHSCSEEEEEEECEEECCTTCCCC
T ss_pred HHHHHhcCCCeEEEEeeceecCCCCcccccccccccccHHHH-----HHHHHHHHHHhCCCCEEEEechhhcCCCCCcce
Confidence 5667788999999999998876322111 2211 122567888999999999999999876433322
Q ss_pred eeeecCCc-CCCcccHHHHHHHHHHHh--hCCC-CCCcEEEEeeCC
Q 028525 148 FQFEEGCA-ANGSLSKEDAAFICVEAL--ESIP-QTGLIFEVVNGE 189 (208)
Q Consensus 148 ~~~~~~~~-~~~~v~~~Dva~~~~~~l--~~~~-~~~~~~~i~~~~ 189 (208)
........ ...+++++|+|++++.++ .++. ..++.+.+.++.
T Consensus 167 ~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~~~~~~~~i~~~~ 212 (221)
T 3r6d_A 167 ELIPEGAQFNDAQVSREAVVKAIFDILHAADETPFHRTSIGVGEPG 212 (221)
T ss_dssp EEECTTSCCCCCEEEHHHHHHHHHHHHTCSCCGGGTTEEEEEECTT
T ss_pred eeccCCccCCCceeeHHHHHHHHHHHHHhcChhhhhcceeeecCCC
Confidence 21211222 234789999999999999 7766 568888888543
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=168.89 Aligned_cols=194 Identities=12% Similarity=0.075 Sum_probs=139.1
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC--c--------
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG--F-------- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~--~-------- 76 (208)
-++||+||++|+++|+++| .+++++|...........+++++.+|++| +++.++++++|+||++++. .
T Consensus 7 TGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~d~vih~a~~~~~~~~~~~~~ 84 (313)
T 3ehe_A 7 TGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEFVNEAARLVKADLAA-DDIKDYLKGAEEVWHIAANPDVRIGAENPD 84 (313)
T ss_dssp ETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGGGSCTTEEEECCCTTT-SCCHHHHTTCSEEEECCCCCCCC-CCCCHH
T ss_pred ECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChhhcCCCcEEEECcCCh-HHHHHHhcCCCEEEECCCCCChhhhhhCHH
Confidence 4679999999999999999 55556554443333345679999999999 9999999999999987221 0
Q ss_pred ------------hhhhhhhcCCCeEEEeceeeeccCCC--------Ccccccchh-HHHhHHHHHHHHH----hcCCCEE
Q 028525 77 ------------ISNAGSLKGVQHVILLSQLSVYRGSG--------GIQALMKGN-ARKLAEQDESMLM----ASGIPYT 131 (208)
Q Consensus 77 ------------~~~a~~~~gv~~~v~~Ss~~~~~~~~--------~~~~~~~~~-~~~~~~~~e~~l~----~~~~~~t 131 (208)
+.+++.+.++++||++||.++|+... +..+...+. .|. .+|.+++ +.+++++
T Consensus 85 ~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~---~~e~~~~~~~~~~g~~~~ 161 (313)
T 3ehe_A 85 EIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKL---ACEALIESYCHTFDMQAW 161 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTTSCCCCCSHHHHHHH---HHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHHHhcCCCEE
Confidence 23557778999999999999886321 222222221 222 3444443 4699999
Q ss_pred EEeccccccCCCCc--------------cce-eeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhH
Q 028525 132 IIRTGVLQNTPGGK--------------QGF-QFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDW 195 (208)
Q Consensus 132 ivRp~~~~~~~~~~--------------~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~ 195 (208)
++||+.+++..... ..+ .++.+.+...+++++|+|++++.+++ +...+++||++++. .+..|+
T Consensus 162 ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~-~~~~~~~~ni~~~~~~s~~e~ 240 (313)
T 3ehe_A 162 IYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLR-GDERVNIFNIGSEDQIKVKRI 240 (313)
T ss_dssp EEECSCEESTTCCCSHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTT-CCSSEEEEECCCSCCEEHHHH
T ss_pred EEeeccccCcCCCcChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhc-cCCCCceEEECCCCCeeHHHH
Confidence 99999998753221 111 12233344678999999999999998 44567899999876 499999
Q ss_pred HHHHHHHhhhc
Q 028525 196 KKCFSRLMEKT 206 (208)
Q Consensus 196 ~~~~~~~~~~~ 206 (208)
++.+.+.+|.+
T Consensus 241 ~~~i~~~~g~~ 251 (313)
T 3ehe_A 241 AEIVCEELGLS 251 (313)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHhCCC
Confidence 99999998864
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=168.34 Aligned_cols=196 Identities=11% Similarity=0.098 Sum_probs=141.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCch-----hhh---hhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC-C---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKR-----NAM---ESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE-G--- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~-----~~~---~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~-~--- 75 (208)
++||++|++++++|+++||+|++++|+.+ +.. .+...+++++.+|++|++++.++++++|+||++++ .
T Consensus 11 GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~ 90 (313)
T 1qyd_A 11 GGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISALAGGVLS 90 (313)
T ss_dssp STTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECCCCSSSS
T ss_pred cCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEECCccccch
Confidence 57999999999999999999999999853 221 12245799999999999999999999999998732 1
Q ss_pred -------chhhhhhhcC-CCeEEEeceeeeccCC--CCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCC--
Q 028525 76 -------FISNAGSLKG-VQHVILLSQLSVYRGS--GGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPG-- 143 (208)
Q Consensus 76 -------~~~~a~~~~g-v~~~v~~Ss~~~~~~~--~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~-- 143 (208)
.+.++++++| ++|||+ |+.+..... .+..+... ....+..+|+++++.+++|+++||+++++...
T Consensus 91 ~~~~~~~~l~~aa~~~g~v~~~v~-S~~g~~~~~~~~~~~p~~~--~y~sK~~~e~~~~~~g~~~~ilrp~~~~~~~~~~ 167 (313)
T 1qyd_A 91 HHILEQLKLVEAIKEAGNIKRFLP-SEFGMDPDIMEHALQPGSI--TFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGS 167 (313)
T ss_dssp TTTTTHHHHHHHHHHSCCCSEEEC-SCCSSCTTSCCCCCSSTTH--HHHHHHHHHHHHHHTTCCBCEEECCEEHHHHTTT
T ss_pred hhHHHHHHHHHHHHhcCCCceEEe-cCCcCCccccccCCCCCcc--hHHHHHHHHHHHHhcCCCeEEEEeceeccccccc
Confidence 1456788888 999986 554432111 11112111 11223357889999999999999998865210
Q ss_pred ----------Cccce-eeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC-C-cchhhHHHHHHHHhhhc
Q 028525 144 ----------GKQGF-QFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNG-E-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 144 ----------~~~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~-~-~~~~e~~~~~~~~~~~~ 206 (208)
....+ .++.+.....+++++|+|++++.+++++...++.|++.++ . .+..|+++++++++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~ 243 (313)
T 1qyd_A 168 LAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQN 243 (313)
T ss_dssp SSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCC
T ss_pred cccccccccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHHhCcccCCceEEEeCCCCccCHHHHHHHHHHhcCCC
Confidence 01111 1222333466789999999999999888767888888753 3 59999999999999875
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.8e-24 Score=165.75 Aligned_cols=197 Identities=14% Similarity=0.155 Sum_probs=141.7
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCc-------hhhh---hhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC-
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDK-------RNAM---ESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~-------~~~~---~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~- 75 (208)
-++||+||++++++|+++||+|++++|++ ++.. .+...+++++.+|++|++++.++++++|+||++++.
T Consensus 8 tGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~~a~~~ 87 (307)
T 2gas_A 8 LGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVICAAGRL 87 (307)
T ss_dssp ESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECSSSS
T ss_pred ECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEEECCccc
Confidence 36799999999999999999999999987 3321 112357899999999999999999999999988332
Q ss_pred ------chhhhhhhcC-CCeEEEeceeeeccC-CCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCC----
Q 028525 76 ------FISNAGSLKG-VQHVILLSQLSVYRG-SGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPG---- 143 (208)
Q Consensus 76 ------~~~~a~~~~g-v~~~v~~Ss~~~~~~-~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~---- 143 (208)
.+.++++++| ++|||+ |+.+.... ..+..+... .+..+..+|++++..+++|+++||+.+++...
T Consensus 88 ~~~~~~~l~~aa~~~g~v~~~v~-S~~g~~~~~~~~~~p~~~--~y~sK~~~e~~~~~~~i~~~~lrp~~~~~~~~~~~~ 164 (307)
T 2gas_A 88 LIEDQVKIIKAIKEAGNVKKFFP-SEFGLDVDRHDAVEPVRQ--VFEEKASIRRVIEAEGVPYTYLCCHAFTGYFLRNLA 164 (307)
T ss_dssp CGGGHHHHHHHHHHHCCCSEEEC-SCCSSCTTSCCCCTTHHH--HHHHHHHHHHHHHHHTCCBEEEECCEETTTTGGGTT
T ss_pred ccccHHHHHHHHHhcCCceEEee-cccccCcccccCCCcchh--HHHHHHHHHHHHHHcCCCeEEEEcceeecccccccc
Confidence 2456788888 999984 55442211 111112111 11222357888988999999999998875321
Q ss_pred -------Ccccee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC-C-cchhhHHHHHHHHhhhc
Q 028525 144 -------GKQGFQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNG-E-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 144 -------~~~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~-~-~~~~e~~~~~~~~~~~~ 206 (208)
....+. ++.+.....+++.+|+|++++.++.++...++.|++.+. . .+.+|+++.+++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~ 237 (307)
T 2gas_A 165 QLDATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKT 237 (307)
T ss_dssp CTTCSSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHHTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSC
T ss_pred ccccccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHHcCccccCceEEEeCCCCcCCHHHHHHHHHHHhCCC
Confidence 011111 222333466789999999999999887767888888743 3 59999999999999875
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.6e-24 Score=167.41 Aligned_cols=197 Identities=13% Similarity=0.128 Sum_probs=140.8
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCCCc--------
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSEGF-------- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~~-------- 76 (208)
-++||+||++|+++|+++||+|++++|+.....+....+++++.+|++|++++.++++ ++|+||++++..
T Consensus 7 tGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~ 86 (330)
T 2c20_A 7 CGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAADSLVGVSMEK 86 (330)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCCCCHHHHHHS
T ss_pred ECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCcccCccccccC
Confidence 3679999999999999999999999997654333333478999999999999999998 899999873210
Q ss_pred --------------hhhhhhhcCCCeEEEeceeeeccCCC--------Ccccccchh-HHHhHHHHHHHHH----hcCCC
Q 028525 77 --------------ISNAGSLKGVQHVILLSQLSVYRGSG--------GIQALMKGN-ARKLAEQDESMLM----ASGIP 129 (208)
Q Consensus 77 --------------~~~a~~~~gv~~~v~~Ss~~~~~~~~--------~~~~~~~~~-~~~~~~~~e~~l~----~~~~~ 129 (208)
+.+++.+.++++||++||.++|+... +..+...+. .|. .+|.+++ +.+++
T Consensus 87 ~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~---~~e~~~~~~~~~~~~~ 163 (330)
T 2c20_A 87 PLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEETMTNPTNTYGETKL---AIEKMLHWYSQASNLR 163 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTTSCCCCSSHHHHHHH---HHHHHHHHHHHTSSCE
T ss_pred HHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcCCCCCCCChHHHHHH---HHHHHHHHHHHHhCCc
Confidence 23456678899999999998886321 111211111 222 3455554 35899
Q ss_pred EEEEeccccccCCCC----------cc--------------ceee-e------cCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 130 YTIIRTGVLQNTPGG----------KQ--------------GFQF-E------EGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 130 ~tivRp~~~~~~~~~----------~~--------------~~~~-~------~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
++++||+.+++.... .. .+.+ + .+.....+++++|+|++++.+++++..
T Consensus 164 ~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~~~~~~~ 243 (330)
T 2c20_A 164 YKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQN 243 (330)
T ss_dssp EEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHHHHHHHHHHHhcccc
Confidence 999999998864210 00 0111 1 112224678999999999999986543
Q ss_pred --CCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 179 --TGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 179 --~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
.+++||++++. .+..|+++.+.+..|.+
T Consensus 244 ~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~ 274 (330)
T 2c20_A 244 GGESDFYNLGNGNGFSVKEIVDAVREVTNHE 274 (330)
T ss_dssp TCCCEEEECCCTTCBCHHHHHHHHHHHTTSC
T ss_pred CCCCCeEEeCCCCCccHHHHHHHHHHHhCCC
Confidence 36899999766 59999999999998764
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=168.75 Aligned_cols=194 Identities=9% Similarity=0.038 Sum_probs=136.9
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhhc--CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc--------
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKRNAMESF--GTYVESMAGDASNKKFLKTALRGVRSIICPSEGF-------- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~-------- 76 (208)
++||+||++|+++|+++| ++|++++|+.++..+.. ..+++++.+|++|++++.++++++|+||++++..
T Consensus 39 GatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~~~~~~~~~~~ 118 (377)
T 2q1s_A 39 GGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHD 118 (377)
T ss_dssp TTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCCCSCHHHHHHC
T ss_pred CCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCCccCchhhhhC
Confidence 369999999999999999 99999999876532222 3579999999999999999999999999873210
Q ss_pred --------------hhhhhhhc-CCCeEEEeceeeeccCCC-------------Cc-ccccchh-HHHhHHHHHHHHH--
Q 028525 77 --------------ISNAGSLK-GVQHVILLSQLSVYRGSG-------------GI-QALMKGN-ARKLAEQDESMLM-- 124 (208)
Q Consensus 77 --------------~~~a~~~~-gv~~~v~~Ss~~~~~~~~-------------~~-~~~~~~~-~~~~~~~~e~~l~-- 124 (208)
+.+++.+. ++++||++||.++|+... +. .+...+. .|. .+|.+++
T Consensus 119 ~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~~~~~Y~~sK~---~~E~~~~~~ 195 (377)
T 2q1s_A 119 PLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKI---FGEFYSVYY 195 (377)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCCCCSSCCCSHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCcccccccccccCCCCchHHHHH---HHHHHHHHH
Confidence 23456677 899999999998875211 11 1211111 222 3455554
Q ss_pred --hcCCCEEEEeccccccCCC---------C-----ccc-------------ee-eecCCcCCCcccHHHHHHH-HHHHh
Q 028525 125 --ASGIPYTIIRTGVLQNTPG---------G-----KQG-------------FQ-FEEGCAANGSLSKEDAAFI-CVEAL 173 (208)
Q Consensus 125 --~~~~~~tivRp~~~~~~~~---------~-----~~~-------------~~-~~~~~~~~~~v~~~Dva~~-~~~~l 173 (208)
+.+++++++||+.+++... . ... +. ++.+.....+++++|+|++ ++.++
T Consensus 196 ~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~i~~~~ 275 (377)
T 2q1s_A 196 HKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDVANGLIACAA 275 (377)
T ss_dssp HHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCCEECCEEHHHHHHHHHHHHH
T ss_pred HHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHH
Confidence 3599999999999987543 1 110 00 1112233567899999999 99999
Q ss_pred hCCCCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 174 ESIPQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 174 ~~~~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
+++. .+ +||++++. .+..|+++.+.+..+.+
T Consensus 276 ~~~~-~g-~~~i~~~~~~s~~e~~~~i~~~~g~~ 307 (377)
T 2q1s_A 276 DGTP-GG-VYNIASGKETSIADLATKINEITGNN 307 (377)
T ss_dssp HCCT-TE-EEECCCCCCEEHHHHHHHHHHHHTCC
T ss_pred hcCC-CC-eEEecCCCceeHHHHHHHHHHHhCCC
Confidence 8765 55 99999865 59999999999998864
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=165.81 Aligned_cols=191 Identities=9% Similarity=-0.008 Sum_probs=138.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCC--C------c-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG--VRSIICPSE--G------F- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~--~------~- 76 (208)
++||+||++|+++|+++||+|++++|+.++ .. . +++++.+|++|++++.+++++ +|+||++++ . .
T Consensus 19 GatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~-l--~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~ 94 (321)
T 2pk3_A 19 GVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL-P--NVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNK 94 (321)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC-T--TEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCCHHHHTTCH
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc-c--eeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcccchhhhhhcH
Confidence 579999999999999999999999998765 22 2 689999999999999999986 899998732 1 0
Q ss_pred -------------hhhhhhhc-CCCeEEEeceeeeccCC--C--------Ccccccchh-HHHhHHHHHHHHHh----cC
Q 028525 77 -------------ISNAGSLK-GVQHVILLSQLSVYRGS--G--------GIQALMKGN-ARKLAEQDESMLMA----SG 127 (208)
Q Consensus 77 -------------~~~a~~~~-gv~~~v~~Ss~~~~~~~--~--------~~~~~~~~~-~~~~~~~~e~~l~~----~~ 127 (208)
+.+++... ++++||++||.++|+.. . +..+...+. .|. .+|.+++. .+
T Consensus 95 ~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~~~~~~Y~~sK~---~~E~~~~~~~~~~g 171 (321)
T 2pk3_A 95 KGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKA---SVGMLARQYVKAYG 171 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSCCBCCSHHHHHHH---HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCCCCCCCccHHHHH---HHHHHHHHHHHHcC
Confidence 23445554 68999999999887632 0 112222111 222 34555543 49
Q ss_pred CCEEEEeccccccCCCCcc-------------------ce-eeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEee
Q 028525 128 IPYTIIRTGVLQNTPGGKQ-------------------GF-QFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVN 187 (208)
Q Consensus 128 ~~~tivRp~~~~~~~~~~~-------------------~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~ 187 (208)
++++++||+.+++...... .. .++.+.....+++++|+|++++.+++++ ..++.|++++
T Consensus 172 i~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~-~~g~~~~i~~ 250 (321)
T 2pk3_A 172 MDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYG-KTGDVYNVCS 250 (321)
T ss_dssp CEEEEEEECEEECTTCCTTSHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHHHHHHHHHC-CTTCEEEESC
T ss_pred CCEEEEEeCcccCcCCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHHHHHHHhCC-CCCCeEEeCC
Confidence 9999999999986532210 11 1222233356789999999999999866 4578999997
Q ss_pred CC-cchhhHHHHHHHHhhhc
Q 028525 188 GE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 188 ~~-~~~~e~~~~~~~~~~~~ 206 (208)
+. .+..|+++.+.+.++.+
T Consensus 251 ~~~~s~~e~~~~i~~~~g~~ 270 (321)
T 2pk3_A 251 GIGTRIQDVLDLLLAMANVK 270 (321)
T ss_dssp SCEEEHHHHHHHHHHHSSSC
T ss_pred CCCeeHHHHHHHHHHHhCCC
Confidence 76 49999999999998764
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-23 Score=164.17 Aligned_cols=194 Identities=11% Similarity=0.047 Sum_probs=138.7
Q ss_pred cccCccHHHHHHHHHhC--CCcEEEEEcCchh-----hhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----
Q 028525 8 KRKKMNFRMVILSLIVK--RTRIKALVKDKRN-----AMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF---- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~--g~~V~~~~R~~~~-----~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~---- 76 (208)
+++|+||++|+++|+++ ||+|++++|+... .......+++++.+|++|++++.++++++|+|||+++..
T Consensus 11 GatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~ 90 (348)
T 1oc2_A 11 GGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAAESHNDN 90 (348)
T ss_dssp TTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECCSCCCHHH
T ss_pred CCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEECCcccCccc
Confidence 57999999999999998 8999999997531 222223578999999999999999999999999883210
Q ss_pred ------------------hhhhhhhcCCCeEEEeceeeeccCCC--------------------Ccccccchh-HHHhHH
Q 028525 77 ------------------ISNAGSLKGVQHVILLSQLSVYRGSG--------------------GIQALMKGN-ARKLAE 117 (208)
Q Consensus 77 ------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~--------------------~~~~~~~~~-~~~~~~ 117 (208)
+.+++...++ +|||+||.++|+... +..+...+. .|.
T Consensus 91 ~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~--- 166 (348)
T 1oc2_A 91 SLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKA--- 166 (348)
T ss_dssp HHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHHHHHHH---
T ss_pred hhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEecccceeCCCcccccccccccccCCCcCCCCCCCCCCccHHHHH---
Confidence 2345666677 999999998875321 111211111 222
Q ss_pred HHHHHHH----hcCCCEEEEeccccccCCCCcc--------------cee-eecCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 118 QDESMLM----ASGIPYTIIRTGVLQNTPGGKQ--------------GFQ-FEEGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 118 ~~e~~l~----~~~~~~tivRp~~~~~~~~~~~--------------~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
.+|.+++ +.+++++++||+.+++...... ... ++.+.....+++++|+|++++.+++++ .
T Consensus 167 ~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~-~ 245 (348)
T 1oc2_A 167 ASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKG-R 245 (348)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHHHhCCCEEEEeeceeeCCCCCccchHHHHHHHHHcCCCceEecCCCceEeeEEHHHHHHHHHHHhhCC-C
Confidence 3445443 3599999999999986543210 011 122233457889999999999999755 3
Q ss_pred CCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 179 TGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 179 ~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
.+++|+++++. .+..|+++.+.+..+.+
T Consensus 246 ~g~~~~i~~~~~~s~~e~~~~i~~~~g~~ 274 (348)
T 1oc2_A 246 MGETYLIGADGEKNNKEVLELILEKMGQP 274 (348)
T ss_dssp TTCEEEECCSCEEEHHHHHHHHHHHTTCC
T ss_pred CCCeEEeCCCCCCCHHHHHHHHHHHhCCC
Confidence 57899999876 59999999999998764
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=165.09 Aligned_cols=196 Identities=10% Similarity=0.031 Sum_probs=141.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCc-h-----hhh---hhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDK-R-----NAM---ESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG--- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~-~-----~~~---~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~--- 75 (208)
++||++|++++++|+++||+|++++|++ + +.. .+...+++++.+|++|++++.++++++|+||++++.
T Consensus 11 GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~~a~~~~~ 90 (321)
T 3c1o_A 11 GGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVISALPFPMI 90 (321)
T ss_dssp TTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCGGGS
T ss_pred cCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEECCCccch
Confidence 5799999999999999999999999986 2 211 112357999999999999999999999999988432
Q ss_pred ----chhhhhhhcC-CCeEEEeceeeeccC-CCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCC-------
Q 028525 76 ----FISNAGSLKG-VQHVILLSQLSVYRG-SGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTP------- 142 (208)
Q Consensus 76 ----~~~~a~~~~g-v~~~v~~Ss~~~~~~-~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~------- 142 (208)
.+.+++++.| ++|||+ |+.+.... ..+..+... .+..+..+|++++..+++|++|||+.+++..
T Consensus 91 ~~~~~l~~aa~~~g~v~~~v~-S~~g~~~~~~~~~~p~~~--~y~sK~~~e~~~~~~~~~~~~lrp~~~~~~~~~~~~~~ 167 (321)
T 3c1o_A 91 SSQIHIINAIKAAGNIKRFLP-SDFGCEEDRIKPLPPFES--VLEKKRIIRRAIEAAALPYTYVSANCFGAYFVNYLLHP 167 (321)
T ss_dssp GGGHHHHHHHHHHCCCCEEEC-SCCSSCGGGCCCCHHHHH--HHHHHHHHHHHHHHHTCCBEEEECCEEHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHhCCccEEec-cccccCccccccCCCcch--HHHHHHHHHHHHHHcCCCeEEEEeceeccccccccccc
Confidence 2456788888 999983 54432111 111111111 1122235788899899999999999876421
Q ss_pred ----CCccce-eeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEee-CC-cchhhHHHHHHHHhhhc
Q 028525 143 ----GGKQGF-QFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVN-GE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 143 ----~~~~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~-~~-~~~~e~~~~~~~~~~~~ 206 (208)
.....+ .++.+.....+++.+|+|++++.++.++...++.|++.+ +. .+.+|+++.+++++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~~ 238 (321)
T 3c1o_A 168 SPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLS 238 (321)
T ss_dssp CSSCCTTSCEEEETTSCCEEEEECHHHHHHHHHHHHHCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSC
T ss_pred cccccccCceEEecCCCcceeEeeHHHHHHHHHHHHhCccccCeEEEEeCCCCcccHHHHHHHHHHHcCCc
Confidence 011112 233344446788999999999999998877788888874 33 59999999999999876
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-23 Score=165.10 Aligned_cols=196 Identities=13% Similarity=0.102 Sum_probs=141.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh-------hcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCCCc--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME-------SFGTYVESMAGDASNKKFLKTALR--GVRSIICPSEGF-- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~-------~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~~-- 76 (208)
+++|+||++++++|+++||+|++++|+.++... ..+.+++++.+|++|++++.++++ ++|+||++++..
T Consensus 12 GatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~ 91 (341)
T 3enk_A 12 GGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAIHFAALKAV 91 (341)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEEECCCCCCH
T ss_pred cCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEEECcccccc
Confidence 469999999999999999999999997654211 124578999999999999999998 899999873210
Q ss_pred --------------------hhhhhhhcCCCeEEEeceeeeccCCC--------Ccccccchh-HHHhHHHHHHHHH---
Q 028525 77 --------------------ISNAGSLKGVQHVILLSQLSVYRGSG--------GIQALMKGN-ARKLAEQDESMLM--- 124 (208)
Q Consensus 77 --------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~--------~~~~~~~~~-~~~~~~~~e~~l~--- 124 (208)
+.+++++.++++||++||.++|+... +..+...+. .|. .+|.+++
T Consensus 92 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~Y~~sK~---~~e~~~~~~~ 168 (341)
T 3enk_A 92 GESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDETFPLSATNPYGQTKL---MAEQILRDVE 168 (341)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTTSCCBCSSHHHHHHH---HHHHHHHHHH
T ss_pred CccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCCCCCCCCChhHHHHH---HHHHHHHHHh
Confidence 23457778899999999998885321 111211111 222 3455554
Q ss_pred -hc-CCCEEEEeccccccCCCC-----------c--------------ccee-ee------cCCcCCCcccHHHHHHHHH
Q 028525 125 -AS-GIPYTIIRTGVLQNTPGG-----------K--------------QGFQ-FE------EGCAANGSLSKEDAAFICV 170 (208)
Q Consensus 125 -~~-~~~~tivRp~~~~~~~~~-----------~--------------~~~~-~~------~~~~~~~~v~~~Dva~~~~ 170 (208)
+. +++++++||+.+++.... . ..+. ++ .+.+...+++++|+|++++
T Consensus 169 ~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~ 248 (341)
T 3enk_A 169 AADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHVVDLARGHI 248 (341)
T ss_dssp HHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEEEHHHHHHHHH
T ss_pred hcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeEEHHHHHHHHH
Confidence 23 599999999999864210 0 0011 11 2233356899999999999
Q ss_pred HHhhCC--CCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 171 EALESI--PQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 171 ~~l~~~--~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
.+++++ ...+++||++++. .++.|+++.+.+..|++
T Consensus 249 ~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~ 287 (341)
T 3enk_A 249 AALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRA 287 (341)
T ss_dssp HHHHHHHHHTSCEEEEESCSCCEEHHHHHHHHHHHHCSC
T ss_pred HHHHhhhcCCcceEEEeCCCCceeHHHHHHHHHHHhCCC
Confidence 999863 3568999999776 49999999999998875
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=166.72 Aligned_cols=196 Identities=10% Similarity=0.023 Sum_probs=138.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-----cCCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCCC-c---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-----FGTYVESMAGDASNKKFLKTALRG--VRSIICPSEG-F--- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-----~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~~-~--- 76 (208)
++||+||++|+++|+++||+|++++|+.++.... ...+++++.+|++|++++.+++++ +|+|||+++. .
T Consensus 16 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~ 95 (357)
T 1rkx_A 16 GHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRL 95 (357)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCCHHH
T ss_pred CCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEECCCCccccc
Confidence 4699999999999999999999999987653211 134789999999999999999986 8999988331 0
Q ss_pred ------------------hhhhhhhcC-CCeEEEeceeeeccCCC---------Ccccccchh-HHHhHHHHHHHHHh--
Q 028525 77 ------------------ISNAGSLKG-VQHVILLSQLSVYRGSG---------GIQALMKGN-ARKLAEQDESMLMA-- 125 (208)
Q Consensus 77 ------------------~~~a~~~~g-v~~~v~~Ss~~~~~~~~---------~~~~~~~~~-~~~~~~~~e~~l~~-- 125 (208)
+.+++...+ +++||++||.++|+... +..+...+. .|. .+|.+++.
T Consensus 96 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~~~~~~~~~Y~~sK~---~~e~~~~~~~ 172 (357)
T 1rkx_A 96 SYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKG---CAELVTSSYR 172 (357)
T ss_dssp HHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHH---HHHHHHHHHH
T ss_pred chhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCCCCCCCCCccHHHHH---HHHHHHHHHH
Confidence 234455555 89999999998876321 111211111 222 34554432
Q ss_pred -----------cCCCEEEEeccccccCCCCc---------------cceeeecCCcCCCcccHHHHHHHHHHHhhC----
Q 028525 126 -----------SGIPYTIIRTGVLQNTPGGK---------------QGFQFEEGCAANGSLSKEDAAFICVEALES---- 175 (208)
Q Consensus 126 -----------~~~~~tivRp~~~~~~~~~~---------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~---- 175 (208)
.+++++++||+.+++..... ..+.+..+.....+++++|+|++++.+++.
T Consensus 173 ~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~ 252 (357)
T 1rkx_A 173 NSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYTD 252 (357)
T ss_dssp HHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCEETHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEEECCCCCeeccEeHHHHHHHHHHHHHhhhhc
Confidence 29999999999998743210 111122223335689999999999998874
Q ss_pred CCCCCcEEEEeeC---CcchhhHHHHHHHHhhhc
Q 028525 176 IPQTGLIFEVVNG---EEKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 176 ~~~~~~~~~i~~~---~~~~~e~~~~~~~~~~~~ 206 (208)
+...+++||++++ ..+..|+++.+.+..+.+
T Consensus 253 ~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~ 286 (357)
T 1rkx_A 253 GAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEG 286 (357)
T ss_dssp CGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTT
T ss_pred CCCCCceEEECCCCCCcccHHHHHHHHHHHhCCC
Confidence 2345789999974 248999999999998864
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-23 Score=162.86 Aligned_cols=190 Identities=14% Similarity=0.133 Sum_probs=141.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh---hhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCC---C----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM---ESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSE---G---- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~---~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~---~---- 75 (208)
+++|+||++|+++|+++||+|++++|+.+... ... .+++++.+|++|++++.++++ ++|+||++++ .
T Consensus 27 GasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l-~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~~~~~~~~ 105 (330)
T 2pzm_A 27 GGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPV-AGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKDPDDW 105 (330)
T ss_dssp TTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSC-TTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCCCSCTTCH
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhcc-CCceEEEeeCCCHHHHHHHHhhcCCCEEEECCccCCCcccc
Confidence 46999999999999999999999999765432 111 468999999999999999999 9999998732 1
Q ss_pred ------------chhhhhhhcCCCeEEEeceeeeccCCC-----------CcccccchhHHHhHHHHHHHHHhcCCCEEE
Q 028525 76 ------------FISNAGSLKGVQHVILLSQLSVYRGSG-----------GIQALMKGNARKLAEQDESMLMASGIPYTI 132 (208)
Q Consensus 76 ------------~~~~a~~~~gv~~~v~~Ss~~~~~~~~-----------~~~~~~~~~~~~~~~~~e~~l~~~~~~~ti 132 (208)
.+.+++.+.++++||++||.++|+... +..+|.. .| ..+|.+++..++++++
T Consensus 106 ~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~~~~~~Y~~--sK---~~~e~~~~~~~~~~~~ 180 (330)
T 2pzm_A 106 AEDAATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPTAPFTSYGI--SK---TAGEAFLMMSDVPVVS 180 (330)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCCCCCSHHHH--HH---HHHHHHHHTCSSCEEE
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCCCCCChHHH--HH---HHHHHHHHHcCCCEEE
Confidence 023456677899999999998886431 1222222 22 2467888877999999
Q ss_pred EeccccccCCCCccc------------eeeecCCcCCCcccHHHHHH-HHHHHhhCCCCCCcEEEEeeCC-cchhhHHHH
Q 028525 133 IRTGVLQNTPGGKQG------------FQFEEGCAANGSLSKEDAAF-ICVEALESIPQTGLIFEVVNGE-EKVSDWKKC 198 (208)
Q Consensus 133 vRp~~~~~~~~~~~~------------~~~~~~~~~~~~v~~~Dva~-~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~ 198 (208)
+||+.+++....... ..++.+. ...+++++|+|+ +++.+++++. ++.|+++++. .+..|+++.
T Consensus 181 iR~~~v~gp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~Dva~~a~~~~~~~~~--g~~~~v~~~~~~s~~e~~~~ 257 (330)
T 2pzm_A 181 LRLANVTGPRLAIGPIPTFYKRLKAGQKCFCSDT-VRDFLDMSDFLAIADLSLQEGRP--TGVFNVSTGEGHSIKEVFDV 257 (330)
T ss_dssp EEECEEECTTCCSSHHHHHHHHHHTTCCCCEESC-EECEEEHHHHHHHHHHHTSTTCC--CEEEEESCSCCEEHHHHHHH
T ss_pred EeeeeeECcCCCCCHHHHHHHHHHcCCEEeCCCC-EecceeHHHHHHHHHHHHhhcCC--CCEEEeCCCCCCCHHHHHHH
Confidence 999988864321110 0111122 356789999999 9999998755 8999999865 499999999
Q ss_pred HHHHhhhc
Q 028525 199 FSRLMEKT 206 (208)
Q Consensus 199 ~~~~~~~~ 206 (208)
+.+.++.+
T Consensus 258 i~~~~g~~ 265 (330)
T 2pzm_A 258 VLDYVGAT 265 (330)
T ss_dssp HHHHHTCC
T ss_pred HHHHhCCC
Confidence 99998764
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=161.07 Aligned_cols=194 Identities=11% Similarity=0.077 Sum_probs=140.1
Q ss_pred ccccCccHHHHHHHHHhC-CCcEEEEEcCchhhhhhc-CCceEEEEcCCCC-HHHHHHHhcCCCEEEEcCC--Cc-----
Q 028525 7 MKRKKMNFRMVILSLIVK-RTRIKALVKDKRNAMESF-GTYVESMAGDASN-KKFLKTALRGVRSIICPSE--GF----- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~-g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d-~~~l~~~~~~~d~vi~~~~--~~----- 76 (208)
-++||+||++|+++|+++ ||+|++++|+.++..... ..+++++.+|++| .+.+.++++++|+|||+++ ..
T Consensus 6 tGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~ 85 (345)
T 2bll_A 6 LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTR 85 (345)
T ss_dssp ETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCCCHHHHHH
T ss_pred ECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcccccCccchhc
Confidence 367999999999999998 899999999987654332 3479999999998 4678889999999998722 10
Q ss_pred ---------------hhhhhhhcCCCeEEEeceeeeccCCCCc------------------ccccchhHHHhHHHHHHHH
Q 028525 77 ---------------ISNAGSLKGVQHVILLSQLSVYRGSGGI------------------QALMKGNARKLAEQDESML 123 (208)
Q Consensus 77 ---------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~------------------~~~~~~~~~~~~~~~e~~l 123 (208)
+.+++.+.+ +||||+||.++|+..... ++|.. .|. .+|.++
T Consensus 86 ~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~--sK~---~~e~~~ 159 (345)
T 2bll_A 86 NPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSV--SKQ---LLDRVI 159 (345)
T ss_dssp SHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHH--HHH---HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecHHHcCCCCCCCcCCcccccccCcccCcccccHH--HHH---HHHHHH
Confidence 234566677 899999999888632110 01211 222 345555
Q ss_pred H----hcCCCEEEEeccccccCCCCc----------------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCC
Q 028525 124 M----ASGIPYTIIRTGVLQNTPGGK----------------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 124 ~----~~~~~~tivRp~~~~~~~~~~----------------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~ 176 (208)
+ +.+++++++||+.+++..... ..+. ++.+.....+++++|+|++++.+++++
T Consensus 160 ~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~ 239 (345)
T 2bll_A 160 WAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENA 239 (345)
T ss_dssp HHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCG
T ss_pred HHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHHHhhc
Confidence 3 469999999999998643210 0011 122233356899999999999999876
Q ss_pred C--CCCcEEEEeeCC--cchhhHHHHHHHHhhhc
Q 028525 177 P--QTGLIFEVVNGE--EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 177 ~--~~~~~~~i~~~~--~~~~e~~~~~~~~~~~~ 206 (208)
. ..+++||++++. .+..|+++.+.+..+.+
T Consensus 240 ~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~ 273 (345)
T 2bll_A 240 GNRCDGEIINIGNPENEASIEELGEMLLASFEKH 273 (345)
T ss_dssp GGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTC
T ss_pred cccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCC
Confidence 4 467899999874 59999999999998764
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-23 Score=161.09 Aligned_cols=194 Identities=14% Similarity=0.101 Sum_probs=137.6
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCCC-c-------
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSEG-F------- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~-~------- 76 (208)
-+++|+||++++++|+++||+|++++|...........+++++.+|++|++++.++++ ++|+||++++. .
T Consensus 6 TGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~ 85 (311)
T 2p5y_A 6 TGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQASVKVSVED 85 (311)
T ss_dssp ETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGGGSCTTCCEECCCTTCHHHHHHHHHHHCCSEEEECCSCCCHHHHHHC
T ss_pred EeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchhhcccCeEEEECCCCCHHHHHHHHHhcCCCEEEECccccCchhhhhC
Confidence 3679999999999999999999999985443222223468899999999999999998 89999987321 0
Q ss_pred --------------hhhhhhhcCCCeEEEecee-eeccC-C--------CCcccccchh-HHHhHHHHHHHHH----hcC
Q 028525 77 --------------ISNAGSLKGVQHVILLSQL-SVYRG-S--------GGIQALMKGN-ARKLAEQDESMLM----ASG 127 (208)
Q Consensus 77 --------------~~~a~~~~gv~~~v~~Ss~-~~~~~-~--------~~~~~~~~~~-~~~~~~~~e~~l~----~~~ 127 (208)
+.+++.+.++++||++||. ++|+. . .+..+...|. .|. .+|.+++ +.+
T Consensus 86 ~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~~~~~~~~~Y~~sK~---~~e~~~~~~~~~~~ 162 (311)
T 2p5y_A 86 PVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKA---AFEHYLSVYGQSYG 162 (311)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTTSCCCCCSHHHHHHH---HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCCCCCCCCChHHHHHH---HHHHHHHHHHHHcC
Confidence 2345667789999999998 66642 1 0111211111 222 3445443 469
Q ss_pred CCEEEEeccccccCCCCc-----------------ccee-e-----ecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEE
Q 028525 128 IPYTIIRTGVLQNTPGGK-----------------QGFQ-F-----EEGCAANGSLSKEDAAFICVEALESIPQTGLIFE 184 (208)
Q Consensus 128 ~~~tivRp~~~~~~~~~~-----------------~~~~-~-----~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~ 184 (208)
++++++||+.+++..... .... + +.+.....+++++|+|++++.+++++ ++.||
T Consensus 163 ~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~---~~~~~ 239 (311)
T 2p5y_A 163 LKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALALFSL---EGIYN 239 (311)
T ss_dssp CCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHHHHHHC---CEEEE
T ss_pred CCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHHHHhCC---CCEEE
Confidence 999999999998643211 0111 1 22223356789999999999998764 78999
Q ss_pred EeeCC-cchhhHHHHHHHHhhhc
Q 028525 185 VVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 185 i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
++++. .+..|+++.+.+.+|.+
T Consensus 240 i~~~~~~s~~e~~~~i~~~~g~~ 262 (311)
T 2p5y_A 240 VGTGEGHTTREVLMAVAEAAGKA 262 (311)
T ss_dssp ESCSCCEEHHHHHHHHHHHHTCC
T ss_pred eCCCCCccHHHHHHHHHHHhCCC
Confidence 99876 49999999999998864
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=159.06 Aligned_cols=196 Identities=13% Similarity=0.104 Sum_probs=139.7
Q ss_pred ccccCccHHHHHHHHHhC---C---CcEEEEEcCch-----hhhhhc-CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 7 MKRKKMNFRMVILSLIVK---R---TRIKALVKDKR-----NAMESF-GTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~---g---~~V~~~~R~~~-----~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
-++||+||++|+++|+++ | |+|++++|+.. ...... ..+++++.+|++|++++.+++.++|+|||+++
T Consensus 6 TGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~ 85 (337)
T 1r6d_A 6 TGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAIVHFAA 85 (337)
T ss_dssp ETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEEEECCS
T ss_pred ECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCEEEECCC
Confidence 367999999999999997 8 99999999642 122111 24789999999999999999999999998832
Q ss_pred -Cc---------------------hhhhhhhcCCCeEEEeceeeeccCCC--------Ccccccchh-HHHhHHHHHHHH
Q 028525 75 -GF---------------------ISNAGSLKGVQHVILLSQLSVYRGSG--------GIQALMKGN-ARKLAEQDESML 123 (208)
Q Consensus 75 -~~---------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~--------~~~~~~~~~-~~~~~~~~e~~l 123 (208)
.. +.+++...+++|||++||.++|+... +..+...+. .|. .+|.++
T Consensus 86 ~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~---~~e~~~ 162 (337)
T 1r6d_A 86 ESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKA---GSDLVA 162 (337)
T ss_dssp CCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTSCCCCCSHHHHHHH---HHHHHH
T ss_pred ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCCCCCCCCCchHHHHH---HHHHHH
Confidence 10 23456677899999999998875321 112211111 222 234444
Q ss_pred H----hcCCCEEEEeccccccCCCCc--------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEE
Q 028525 124 M----ASGIPYTIIRTGVLQNTPGGK--------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFE 184 (208)
Q Consensus 124 ~----~~~~~~tivRp~~~~~~~~~~--------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~ 184 (208)
+ +.+++++++||+.+++..... ..+. ++.+.....+++++|+|++++.+++++. .++.||
T Consensus 163 ~~~~~~~g~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~g~~~~ 241 (337)
T 1r6d_A 163 RAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGR-AGEIYH 241 (337)
T ss_dssp HHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC-TTCEEE
T ss_pred HHHHHHHCCCEEEEEeeeeECCCCCCCChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHHhCCC-CCCEEE
Confidence 3 469999999999998643211 1111 1222333568899999999999997653 578999
Q ss_pred EeeCC-cchhhHHHHHHHHhhhc
Q 028525 185 VVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 185 i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
++++. .+..|+++.+.+.++.+
T Consensus 242 v~~~~~~s~~e~~~~i~~~~g~~ 264 (337)
T 1r6d_A 242 IGGGLELTNRELTGILLDSLGAD 264 (337)
T ss_dssp ECCCCEEEHHHHHHHHHHHHTCC
T ss_pred eCCCCCccHHHHHHHHHHHhCCC
Confidence 99876 59999999999998864
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-23 Score=165.72 Aligned_cols=193 Identities=10% Similarity=0.024 Sum_probs=138.4
Q ss_pred ccccCccHHHHHHHHHhC--CCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCCCc------
Q 028525 7 MKRKKMNFRMVILSLIVK--RTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSEGF------ 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~--g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~~------ 76 (208)
-++||+||++|+++|+++ ||+|++++|+.++... ..+++++.+|++|++++.++++ ++|+||++++..
T Consensus 8 tGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~ 85 (312)
T 2yy7_A 8 IGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDV--VNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAALLSATAEK 85 (312)
T ss_dssp ETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHH--HHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCHHHHHH
T ss_pred ECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccc--cCCCceEEecCCCHHHHHHHHhhcCCCEEEECCccCCCchhh
Confidence 367999999999999999 8999999998765321 1357899999999999999998 899999883210
Q ss_pred ---------------hhhhhhhcCCCeEEEeceeeeccCCCC---------cccccchh-HHHhHHHHHHHHH----hcC
Q 028525 77 ---------------ISNAGSLKGVQHVILLSQLSVYRGSGG---------IQALMKGN-ARKLAEQDESMLM----ASG 127 (208)
Q Consensus 77 ---------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~---------~~~~~~~~-~~~~~~~~e~~l~----~~~ 127 (208)
+.+++.+.++++|||+||.++|+...+ ..+...+. .|. .+|.+++ +.+
T Consensus 86 ~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~---~~e~~~~~~~~~~~ 162 (312)
T 2yy7_A 86 NPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQ---AGERWCEYYHNIYG 162 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSSCBCCCCSHHHHHHH---HHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCccccCcCCCCchhHHHHH---HHHHHHHHHHHhcC
Confidence 234566788999999999988863211 11111111 222 2344443 459
Q ss_pred CCEEEEeccccccCC---CCc---------------cce-eeecCCcCCCcccHHHHHHHHHHHhhCCCC---CCcEEEE
Q 028525 128 IPYTIIRTGVLQNTP---GGK---------------QGF-QFEEGCAANGSLSKEDAAFICVEALESIPQ---TGLIFEV 185 (208)
Q Consensus 128 ~~~tivRp~~~~~~~---~~~---------------~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~---~~~~~~i 185 (208)
++++++||+.+++.. ... ... .++.+.....+++++|+|++++.+++++.. .+++||+
T Consensus 163 ~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni 242 (312)
T 2yy7_A 163 VDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATINIMKAPVEKIKIHSSYNL 242 (312)
T ss_dssp CEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTSEEEESSCTTCCEEEEEHHHHHHHHHHHHHSCGGGCCCSSCEEC
T ss_pred CcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCCCeEEecCCCceeeeeeHHHHHHHHHHHHhCcccccccCceEEe
Confidence 999999999998732 110 001 112233446779999999999999987754 2489999
Q ss_pred eeCCcchhhHHHHHHHHhh
Q 028525 186 VNGEEKVSDWKKCFSRLME 204 (208)
Q Consensus 186 ~~~~~~~~e~~~~~~~~~~ 204 (208)
++...+..|+++.+.+..+
T Consensus 243 ~~~~~s~~e~~~~i~~~~~ 261 (312)
T 2yy7_A 243 AAMSFTPTEIANEIKKHIP 261 (312)
T ss_dssp CSEEECHHHHHHHHHTTCT
T ss_pred CCCccCHHHHHHHHHHHCC
Confidence 9644599999999998876
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.7e-23 Score=161.81 Aligned_cols=190 Identities=9% Similarity=0.072 Sum_probs=140.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC--CceEEEEcCCCCHHHHHHHhcC--CCEEEEcCC---C-----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG--TYVESMAGDASNKKFLKTALRG--VRSIICPSE---G----- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~--~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~---~----- 75 (208)
++||+||++|+++|+++||+|++++|+.+...+... .+++++.+|++|++++.+++++ +|+||++++ .
T Consensus 28 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~~~~~~~~~ 107 (333)
T 2q1w_A 28 GICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWY 107 (333)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCCCSCTTCHH
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECceecCCCccCC
Confidence 469999999999999999999999998654222121 4789999999999999999988 999998722 1
Q ss_pred -----------chhhhhhhcCCCeEEEeceeeecc----CC--------CCc-ccccchhHHHhHHHHHHHHHh-cCCCE
Q 028525 76 -----------FISNAGSLKGVQHVILLSQLSVYR----GS--------GGI-QALMKGNARKLAEQDESMLMA-SGIPY 130 (208)
Q Consensus 76 -----------~~~~a~~~~gv~~~v~~Ss~~~~~----~~--------~~~-~~~~~~~~~~~~~~~e~~l~~-~~~~~ 130 (208)
.+.+++...++++||++||.++|+ .. .+. .+|.. .| ..+|.+++. .. ++
T Consensus 108 ~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~~~~E~~~p~~~~Y~~--sK---~~~E~~~~~s~~-~~ 181 (333)
T 2q1w_A 108 NDTLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAI--SK---SANEDYLEYSGL-DF 181 (333)
T ss_dssp HHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSBCTTSCCCCTTCHHHH--HH---HHHHHHHHHHTC-CE
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCCCcCCCCCCCCCchHH--HH---HHHHHHHHhhhC-Ce
Confidence 023456667899999999998886 32 111 22222 22 246777777 55 99
Q ss_pred EEEeccccccCCCCccc------------eeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHH
Q 028525 131 TIIRTGVLQNTPGGKQG------------FQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKK 197 (208)
Q Consensus 131 tivRp~~~~~~~~~~~~------------~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~ 197 (208)
+++||+.+++....... ..++ +.....+++.+|+|++++.+++++. +++|+++++. .+..|+++
T Consensus 182 ~ilR~~~v~gp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~Dva~ai~~~~~~~~--g~~~~v~~~~~~s~~e~~~ 258 (333)
T 2q1w_A 182 VTFRLANVVGPRNVSGPLPIFFQRLSEGKKCFV-TKARRDFVFVKDLARATVRAVDGVG--HGAYHFSSGTDVAIKELYD 258 (333)
T ss_dssp EEEEESEEESTTCCSSHHHHHHHHHHTTCCCEE-EECEECEEEHHHHHHHHHHHHTTCC--CEEEECSCSCCEEHHHHHH
T ss_pred EEEeeceEECcCCcCcHHHHHHHHHHcCCeeeC-CCceEeeEEHHHHHHHHHHHHhcCC--CCEEEeCCCCCccHHHHHH
Confidence 99999988764311100 1111 2333567899999999999998766 8999999766 49999999
Q ss_pred HHHHHhhhc
Q 028525 198 CFSRLMEKT 206 (208)
Q Consensus 198 ~~~~~~~~~ 206 (208)
.+.+.+|.+
T Consensus 259 ~i~~~~g~~ 267 (333)
T 2q1w_A 259 AVVEAMALP 267 (333)
T ss_dssp HHHHHTTCS
T ss_pred HHHHHhCCC
Confidence 999998764
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.6e-23 Score=165.55 Aligned_cols=192 Identities=18% Similarity=0.168 Sum_probs=135.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh-----------------------hhcCCceEEEEcCCCCHHHHHHHhc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM-----------------------ESFGTYVESMAGDASNKKFLKTALR 64 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~-----------------------~~~~~~v~~v~~Dl~d~~~l~~~~~ 64 (208)
++||+||++|+++|+++||+|++++|...... .....+++++.+|++|++++.++++
T Consensus 18 G~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~ 97 (404)
T 1i24_A 18 GGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFEFLAESFK 97 (404)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCCHHHHHHHHh
Confidence 57999999999999999999999998643210 0123578999999999999999998
Q ss_pred C--CCEEEEcCCC-c------------------------hhhhhhhcCC-CeEEEeceeeeccCCC--------------
Q 028525 65 G--VRSIICPSEG-F------------------------ISNAGSLKGV-QHVILLSQLSVYRGSG-------------- 102 (208)
Q Consensus 65 ~--~d~vi~~~~~-~------------------------~~~a~~~~gv-~~~v~~Ss~~~~~~~~-------------- 102 (208)
+ +|+|||+++. . +.+++...++ ++||++||.++|+...
T Consensus 98 ~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~E~~~~~~~~~ 177 (404)
T 1i24_A 98 SFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNG 177 (404)
T ss_dssp HHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSSEEEEEETT
T ss_pred ccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCCCCCCcccccccccc
Confidence 7 9999987321 0 1234566777 5999999998886321
Q ss_pred -------Ccccccchh-HHHhHHHHHHHHH----hcCCCEEEEeccccccCCCC------------------c-------
Q 028525 103 -------GIQALMKGN-ARKLAEQDESMLM----ASGIPYTIIRTGVLQNTPGG------------------K------- 145 (208)
Q Consensus 103 -------~~~~~~~~~-~~~~~~~~e~~l~----~~~~~~tivRp~~~~~~~~~------------------~------- 145 (208)
+..+...|. .|. .+|.+++ ..+++++++||+.+++.... .
T Consensus 178 ~~~~~~~~~~~~~~Y~~sK~---~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (404)
T 1i24_A 178 RTDTLPYPKQASSFYHLSKV---HDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFC 254 (404)
T ss_dssp EEEEEECCCCCCSHHHHHHH---HHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHHHHHH
T ss_pred ccccccCCCCCCChhHHHHH---HHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccchhhHHHHHH
Confidence 111111111 222 2344443 35999999999999864321 0
Q ss_pred ------cce-eeecCCcCCCcccHHHHHHHHHHHhhCCCCCC--cEEEEeeCCcchhhHHHHHHHH
Q 028525 146 ------QGF-QFEEGCAANGSLSKEDAAFICVEALESIPQTG--LIFEVVNGEEKVSDWKKCFSRL 202 (208)
Q Consensus 146 ------~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~--~~~~i~~~~~~~~e~~~~~~~~ 202 (208)
..+ .++.+.+...+++++|+|++++.+++++...+ ++||++++..+..|+++.+.+.
T Consensus 255 ~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~~~g~~~~yni~~~~~s~~e~~~~i~~~ 320 (404)
T 1i24_A 255 VQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKA 320 (404)
T ss_dssp HHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHH
T ss_pred HHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcccCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 011 12223334678999999999999998876556 7999987445999999999987
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=162.02 Aligned_cols=197 Identities=12% Similarity=0.038 Sum_probs=138.3
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCch-h----hhhhc-CCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCCC-c-
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKR-N----AMESF-GTYVESMAGDASNKKFLKTALRG--VRSIICPSEG-F- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~-~----~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~~-~- 76 (208)
-++||+||++|+++|+++||+|++++|+.. . ...+. ..+++++.+|++|++++.+++++ +|+||++++. .
T Consensus 7 TGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~ 86 (347)
T 1orr_A 7 TGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAM 86 (347)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred eCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEECCcccCh
Confidence 467999999999999999999999998531 1 11111 23589999999999999999988 9999988321 0
Q ss_pred --------------------hhhhhhhcCCC-eEEEeceeeeccCCC------------------------Ccccccchh
Q 028525 77 --------------------ISNAGSLKGVQ-HVILLSQLSVYRGSG------------------------GIQALMKGN 111 (208)
Q Consensus 77 --------------------~~~a~~~~gv~-~~v~~Ss~~~~~~~~------------------------~~~~~~~~~ 111 (208)
+.+++...+++ +||++||.++|+... +..+...|.
T Consensus 87 ~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~~Y~ 166 (347)
T 1orr_A 87 TTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYG 166 (347)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCCCCHHHH
T ss_pred hhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccCCCCCCCchH
Confidence 23456667886 999999998876321 111111111
Q ss_pred -HHHhHHHHHHHHHh----cCCCEEEEeccccccCCCCc-----------------c-----cee-eecCCcCCCcccHH
Q 028525 112 -ARKLAEQDESMLMA----SGIPYTIIRTGVLQNTPGGK-----------------Q-----GFQ-FEEGCAANGSLSKE 163 (208)
Q Consensus 112 -~~~~~~~~e~~l~~----~~~~~tivRp~~~~~~~~~~-----------------~-----~~~-~~~~~~~~~~v~~~ 163 (208)
.|. .+|.+++. .+++++++||+.+++..... . .+. ++.+.+...+++++
T Consensus 167 ~sK~---~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~ 243 (347)
T 1orr_A 167 CSKG---AADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAE 243 (347)
T ss_dssp HHHH---HHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEHH
T ss_pred HHHH---HHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEecCCcceEeeEEHH
Confidence 222 34555543 59999999999998643211 0 111 12222334678999
Q ss_pred HHHHHHHHHhhCC-CCCCcEEEEeeCC---cchhhHHHHHHHHhhhc
Q 028525 164 DAAFICVEALESI-PQTGLIFEVVNGE---EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 164 Dva~~~~~~l~~~-~~~~~~~~i~~~~---~~~~e~~~~~~~~~~~~ 206 (208)
|+|++++.+++++ ...++.|+++++. .+..|+++.+.+.++.+
T Consensus 244 Dva~a~~~~~~~~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~ 290 (347)
T 1orr_A 244 DMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNID 290 (347)
T ss_dssp HHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhccccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCC
Confidence 9999999999863 3467899999875 58999999999998864
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=160.87 Aligned_cols=196 Identities=14% Similarity=0.095 Sum_probs=136.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh----------hhh---hcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN----------AME---SFGTYVESMAGDASNKKFLKTALR--GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~----------~~~---~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~ 72 (208)
++||+||++|+++|+++||+|++++|+... ... ..+.+++++.+|++|++++.++++ ++|+||++
T Consensus 9 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~ 88 (348)
T 1ek6_A 9 GGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHF 88 (348)
T ss_dssp TTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcCCCEEEEC
Confidence 579999999999999999999999985432 111 123578999999999999999998 89999988
Q ss_pred CCCc----------------------hhhhhhhcCCCeEEEeceeeeccCC--------CCccc-ccchh-HHHhHHHHH
Q 028525 73 SEGF----------------------ISNAGSLKGVQHVILLSQLSVYRGS--------GGIQA-LMKGN-ARKLAEQDE 120 (208)
Q Consensus 73 ~~~~----------------------~~~a~~~~gv~~~v~~Ss~~~~~~~--------~~~~~-~~~~~-~~~~~~~~e 120 (208)
++.. +.+++++.++++||++||.++|+.. .+..+ ...+. .|. .+|
T Consensus 89 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~~~~~p~~~~Y~~sK~---~~e 165 (348)
T 1ek6_A 89 AGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKF---FIE 165 (348)
T ss_dssp CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHHHHH---HHH
T ss_pred CCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCCCCCCCCCCchHHHHH---HHH
Confidence 3210 2345667789999999999888631 11112 11111 222 345
Q ss_pred HHHHh---cC--CCEEEEeccccccCCC-----C------c--------------ccee-ee------cCCcCCCcccHH
Q 028525 121 SMLMA---SG--IPYTIIRTGVLQNTPG-----G------K--------------QGFQ-FE------EGCAANGSLSKE 163 (208)
Q Consensus 121 ~~l~~---~~--~~~tivRp~~~~~~~~-----~------~--------------~~~~-~~------~~~~~~~~v~~~ 163 (208)
.+++. .+ ++++++||+.+++... . . ..+. ++ .+.....+++++
T Consensus 166 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 245 (348)
T 1ek6_A 166 EMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVV 245 (348)
T ss_dssp HHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHH
T ss_pred HHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCceEEeeEEHH
Confidence 55442 24 9999999999886421 0 0 0011 11 112234679999
Q ss_pred HHHHHHHHHhhCCC-CCC-cEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 164 DAAFICVEALESIP-QTG-LIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 164 Dva~~~~~~l~~~~-~~~-~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
|+|++++.+++++. ..+ +.||++++. .+..|+++.+.+..+.+
T Consensus 246 Dva~a~~~~~~~~~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~ 291 (348)
T 1ek6_A 246 DLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKK 291 (348)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhcccccCCceEEEeCCCCCccHHHHHHHHHHHhCCC
Confidence 99999999998763 344 899999766 59999999999998764
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-22 Score=159.16 Aligned_cols=195 Identities=13% Similarity=0.056 Sum_probs=136.4
Q ss_pred cccCccHHHHHHHHHhCC--CcEEEEEcCchh-----hhhhc-CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc---
Q 028525 8 KRKKMNFRMVILSLIVKR--TRIKALVKDKRN-----AMESF-GTYVESMAGDASNKKFLKTALRGVRSIICPSEGF--- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~-----~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~--- 76 (208)
++||+||++|+++|+++| ++|++++|+... ..... ..+++++.+|++|++++.+++.++|+|||+++..
T Consensus 10 GatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~ 89 (336)
T 2hun_A 10 GGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHLAAESHVD 89 (336)
T ss_dssp TTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEECCCCCCHH
T ss_pred CCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEECCCCcChh
Confidence 579999999999999986 999999987521 11111 3478999999999999999999999999883210
Q ss_pred -------------------hhhhhhhcCC-CeEEEeceeeeccCCC--------Ccccccchh-HHHhHHHHHHHHH---
Q 028525 77 -------------------ISNAGSLKGV-QHVILLSQLSVYRGSG--------GIQALMKGN-ARKLAEQDESMLM--- 124 (208)
Q Consensus 77 -------------------~~~a~~~~gv-~~~v~~Ss~~~~~~~~--------~~~~~~~~~-~~~~~~~~e~~l~--- 124 (208)
+.+++...+. +|||++||.++|+... +..+...+. .|. .+|.+++
T Consensus 90 ~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~---~~e~~~~~~~ 166 (336)
T 2hun_A 90 RSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSPYSATKA---ASDMLVLGWT 166 (336)
T ss_dssp HHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTBCCCCCSHHHHHHH---HHHHHHHHHH
T ss_pred hhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCCCCCCCCccHHHHH---HHHHHHHHHH
Confidence 2234555565 7999999998875321 112211111 222 3444443
Q ss_pred -hcCCCEEEEeccccccCCCCc--------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC
Q 028525 125 -ASGIPYTIIRTGVLQNTPGGK--------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNG 188 (208)
Q Consensus 125 -~~~~~~tivRp~~~~~~~~~~--------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~ 188 (208)
+.+++++++||+.+++..... ..+. ++.+.....+++++|+|++++.+++++. .++.|+++++
T Consensus 167 ~~~~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~-~g~~~~v~~~ 245 (336)
T 2hun_A 167 RTYNLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGE-SREIYNISAG 245 (336)
T ss_dssp HHTTCEEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHHHCC-TTCEEEECCS
T ss_pred HHhCCCEEEEeeeeeeCcCCCcCchHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHhCCC-CCCEEEeCCC
Confidence 468999999999998643211 0111 1222334578899999999999987643 5789999987
Q ss_pred C-cchhhHHHHHHHHhhhc
Q 028525 189 E-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 189 ~-~~~~e~~~~~~~~~~~~ 206 (208)
. .+..|+++.+.+.++.+
T Consensus 246 ~~~s~~e~~~~i~~~~g~~ 264 (336)
T 2hun_A 246 EEKTNLEVVKIILRLMGKG 264 (336)
T ss_dssp CEECHHHHHHHHHHHTTCC
T ss_pred CcccHHHHHHHHHHHhCCC
Confidence 6 49999999999998864
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=161.60 Aligned_cols=192 Identities=13% Similarity=0.047 Sum_probs=138.8
Q ss_pred cccCccHHHHHHHHHh--CCCcEEEEEcCch-------------hhhhhcCCceEEEEcCCCCHHHHHHH-hcCCCEEEE
Q 028525 8 KRKKMNFRMVILSLIV--KRTRIKALVKDKR-------------NAMESFGTYVESMAGDASNKKFLKTA-LRGVRSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~--~g~~V~~~~R~~~-------------~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~ 71 (208)
+++|+||++|+++|++ +||+|++++|+.+ +.......+++++.+|++|++++.++ ..++|+||+
T Consensus 17 GatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~D~vih 96 (362)
T 3sxp_A 17 GGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLEKLHFDYLFH 96 (362)
T ss_dssp TTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHHTTSCCSEEEE
T ss_pred CCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHhhccCCCEEEE
Confidence 4699999999999999 9999999999764 12223345689999999999999999 789999998
Q ss_pred cCC--C------------------chhhhhhhcCCCeEEEeceeeeccCCCC-------cccccchhHHHhHHHHHHHHH
Q 028525 72 PSE--G------------------FISNAGSLKGVQHVILLSQLSVYRGSGG-------IQALMKGNARKLAEQDESMLM 124 (208)
Q Consensus 72 ~~~--~------------------~~~~a~~~~gv~~~v~~Ss~~~~~~~~~-------~~~~~~~~~~~~~~~~e~~l~ 124 (208)
+++ . .+.+++++.+++ ||++||.++|+.... ..+...|.. .+..+|.+++
T Consensus 97 ~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS~~vyg~~~~~~~E~~~~~p~~~Y~~--sK~~~E~~~~ 173 (362)
T 3sxp_A 97 QAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASSAGVYGNTKAPNVVGKNESPENVYGF--SKLCMDEFVL 173 (362)
T ss_dssp CCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEEGGGGCSCCSSBCTTSCCCCSSHHHH--HHHHHHHHHH
T ss_pred CCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCcHHHhCCCCCCCCCCCCCCCCChhHH--HHHHHHHHHH
Confidence 732 1 024566777887 999999988863221 112111111 1224677777
Q ss_pred hcC--CCEEEEeccccccCCCCc------------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEE
Q 028525 125 ASG--IPYTIIRTGVLQNTPGGK------------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIF 183 (208)
Q Consensus 125 ~~~--~~~tivRp~~~~~~~~~~------------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~ 183 (208)
... ++++++||+.+++..... .... ++.+.....+++++|+|++++.+++++. .+ +|
T Consensus 174 ~~~~~~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ai~~~~~~~~-~g-~~ 251 (362)
T 3sxp_A 174 SHSNDNVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKAMKAQK-SG-VY 251 (362)
T ss_dssp HTTTTSCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEEECEEHHHHHHHHHHHTTCSS-CE-EE
T ss_pred HHhccCCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEEccEEHHHHHHHHHHHHhcCC-CC-EE
Confidence 643 899999999988643211 0111 1222334568999999999999998765 45 99
Q ss_pred EEeeCC-cchhhHHHHHHHHhh
Q 028525 184 EVVNGE-EKVSDWKKCFSRLME 204 (208)
Q Consensus 184 ~i~~~~-~~~~e~~~~~~~~~~ 204 (208)
|++++. .+..|+++.+.+..+
T Consensus 252 ~i~~~~~~s~~e~~~~i~~~~g 273 (362)
T 3sxp_A 252 NVGYSQARSYNEIVSILKEHLG 273 (362)
T ss_dssp EESCSCEEEHHHHHHHHHHHHC
T ss_pred EeCCCCCccHHHHHHHHHHHcC
Confidence 999776 499999999999887
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=160.11 Aligned_cols=194 Identities=11% Similarity=-0.031 Sum_probs=138.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh-----hhh-cCCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCCC-c--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA-----MES-FGTYVESMAGDASNKKFLKTALRG--VRSIICPSEG-F-- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-----~~~-~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~~-~-- 76 (208)
++||+||++|+++|+++||+|++++|+.++. ... ...+++++.+|++|++++.+++++ +|+||++++. .
T Consensus 21 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~ 100 (335)
T 1rpn_A 21 GITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVG 100 (335)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCCHH
T ss_pred CCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEEEECccccchh
Confidence 5799999999999999999999999987541 111 124689999999999999999985 6999987321 0
Q ss_pred -------------------hhhhhhhcCC-CeEEEeceeeeccCCC--------Ccccccchh-HHHhHHHHHHHHH---
Q 028525 77 -------------------ISNAGSLKGV-QHVILLSQLSVYRGSG--------GIQALMKGN-ARKLAEQDESMLM--- 124 (208)
Q Consensus 77 -------------------~~~a~~~~gv-~~~v~~Ss~~~~~~~~--------~~~~~~~~~-~~~~~~~~e~~l~--- 124 (208)
+.+++...++ ++||++||.++|+... +..+...+. .|. .+|.+++
T Consensus 101 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~---~~e~~~~~~~ 177 (335)
T 1rpn_A 101 ASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKL---YGHWITVNYR 177 (335)
T ss_dssp HHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHH---HHHHHHHHHH
T ss_pred hhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcccCCCCCChhHHHHH---HHHHHHHHHH
Confidence 2345666786 8999999998886321 111211111 222 3455544
Q ss_pred -hcCCCEEEEeccccccCCCCcc------------------c-eeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEE
Q 028525 125 -ASGIPYTIIRTGVLQNTPGGKQ------------------G-FQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFE 184 (208)
Q Consensus 125 -~~~~~~tivRp~~~~~~~~~~~------------------~-~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~ 184 (208)
+.+++++++||+.+++...... . ..++.+.....+++++|+|++++.+++++. ++.||
T Consensus 178 ~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~--~~~~n 255 (335)
T 1rpn_A 178 ESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK--ADDYV 255 (335)
T ss_dssp HHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSSS--CCCEE
T ss_pred HHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHHHHHHHHhcCC--CCEEE
Confidence 3599999999998876421110 0 112233344568999999999999998765 47899
Q ss_pred EeeCC-cchhhHHHHHHHHhhhc
Q 028525 185 VVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 185 i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
++++. .+..|+++.+.+.+|.+
T Consensus 256 i~~~~~~s~~e~~~~i~~~~g~~ 278 (335)
T 1rpn_A 256 VATGVTTTVRDMCQIAFEHVGLD 278 (335)
T ss_dssp ECCSCEEEHHHHHHHHHHTTTCC
T ss_pred EeCCCCccHHHHHHHHHHHhCCC
Confidence 99876 59999999999998764
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-23 Score=161.50 Aligned_cols=188 Identities=10% Similarity=0.053 Sum_probs=122.7
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCCC---------
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG--VRSIICPSEG--------- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~~--------- 75 (208)
-++||+||++|+++|+++||+|++++|+.++ .+ ++.+|++|++++.+++++ +|+||++++.
T Consensus 8 tGatG~iG~~l~~~L~~~g~~V~~~~r~~~~------~~--~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~ 79 (315)
T 2ydy_A 8 TGATGLLGRAVHKEFQQNNWHAVGCGFRRAR------PK--FEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQ 79 (315)
T ss_dssp ETTTSHHHHHHHHHHHTTTCEEEEEC--------------------------CHHHHHHHCCSEEEECC-----------
T ss_pred ECCCcHHHHHHHHHHHhCCCeEEEEccCCCC------CC--eEEecCCCHHHHHHHHHhhCCCEEEECCcccChhhhhcC
Confidence 3679999999999999999999999987644 12 788999999999999985 8999987220
Q ss_pred -------------chhhhhhhcCCCeEEEeceeeeccCC-------CCcccccchhHHHhHHHHHHHHHhcCCCEEEEec
Q 028525 76 -------------FISNAGSLKGVQHVILLSQLSVYRGS-------GGIQALMKGNARKLAEQDESMLMASGIPYTIIRT 135 (208)
Q Consensus 76 -------------~~~~a~~~~gv~~~v~~Ss~~~~~~~-------~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp 135 (208)
.+.+++...++ +||++||.++|+.. .+..+...+.. .+..+|.+++..+++++++||
T Consensus 80 ~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~~~~~~~~~E~~~~~~~~~Y~~--sK~~~e~~~~~~~~~~~~lR~ 156 (315)
T 2ydy_A 80 PDAASQLNVDASGNLAKEAAAVGA-FLIYISSDYVFDGTNPPYREEDIPAPLNLYGK--TKLDGEKAVLENNLGAAVLRI 156 (315)
T ss_dssp --------CHHHHHHHHHHHHHTC-EEEEEEEGGGSCSSSCSBCTTSCCCCCSHHHH--HHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchHHHcCCCCCCCCCCCCCCCcCHHHH--HHHHHHHHHHHhCCCeEEEee
Confidence 02345666777 99999999888641 11112111111 122568888888899999999
Q ss_pred cccccCCCC---c-------------cceeeecCCcCCCcccHHHHHHHHHHHhhCC---CCCCcEEEEeeCC-cchhhH
Q 028525 136 GVLQNTPGG---K-------------QGFQFEEGCAANGSLSKEDAAFICVEALESI---PQTGLIFEVVNGE-EKVSDW 195 (208)
Q Consensus 136 ~~~~~~~~~---~-------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~---~~~~~~~~i~~~~-~~~~e~ 195 (208)
+.+++.... . ....+ .+.....+++++|+|++++.+++++ ...++.||++++. .+..|+
T Consensus 157 ~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e~ 235 (315)
T 2ydy_A 157 PILYGEVEKLEESAVTVMFDKVQFSNKSANM-DHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSGNEQMTKYEM 235 (315)
T ss_dssp CSEECSCSSGGGSTTGGGHHHHHCCSSCEEE-ECSSBBCCEEHHHHHHHHHHHHHHHHTCTTCCEEEECCCSCCBCHHHH
T ss_pred eeeeCCCCcccccHHHHHHHHHHhcCCCeee-ccCceECcEEHHHHHHHHHHHHHhhccccCCCCeEEEcCCCcccHHHH
Confidence 999853222 0 00111 1233457789999999999998764 3467899999866 599999
Q ss_pred HHHHHHHhhhc
Q 028525 196 KKCFSRLMEKT 206 (208)
Q Consensus 196 ~~~~~~~~~~~ 206 (208)
++.+.+.+|.+
T Consensus 236 ~~~i~~~~g~~ 246 (315)
T 2ydy_A 236 ACAIADAFNLP 246 (315)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHhCCC
Confidence 99999998865
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=159.46 Aligned_cols=184 Identities=11% Similarity=0.090 Sum_probs=132.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCC--C--------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSE--G-------- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~--~-------- 75 (208)
++||+||++|+++|+++||+|+++.|+. .+|++|.+++.++++ ++|+||++++ .
T Consensus 10 GatG~iG~~l~~~L~~~g~~v~~~~r~~--------------~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~ 75 (321)
T 1e6u_A 10 GHRGMVGSAIRRQLEQRGDVELVLRTRD--------------ELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTY 75 (321)
T ss_dssp TTTSHHHHHHHHHHTTCTTEEEECCCTT--------------TCCTTCHHHHHHHHHHHCCSEEEECCCCCCCHHHHHHC
T ss_pred CCCcHHHHHHHHHHHhCCCeEEEEecCc--------------cCCccCHHHHHHHHHhcCCCEEEEcCeecCCcchhhhC
Confidence 5799999999999999999999988762 379999999999998 9999998722 1
Q ss_pred -------------chhhhhhhcCCCeEEEeceeeeccCCC------------CcccccchhHHHhHHHHHHHHHh----c
Q 028525 76 -------------FISNAGSLKGVQHVILLSQLSVYRGSG------------GIQALMKGNARKLAEQDESMLMA----S 126 (208)
Q Consensus 76 -------------~~~~a~~~~gv~~~v~~Ss~~~~~~~~------------~~~~~~~~~~~~~~~~~e~~l~~----~ 126 (208)
.+.+++.+.++++|||+||.++|+... +..+....+.. .+..+|++++. .
T Consensus 76 ~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~-sK~~~E~~~~~~~~~~ 154 (321)
T 1e6u_A 76 PADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAI-AKIAGIKLCESYNRQY 154 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCccccccCCCCCCCCccHH-HHHHHHHHHHHHHHHh
Confidence 023456778899999999999886321 11111101111 11234555543 5
Q ss_pred CCCEEEEeccccccCCCCc-----------------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCCCC---
Q 028525 127 GIPYTIIRTGVLQNTPGGK-----------------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIPQT--- 179 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~~~~-----------------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~--- 179 (208)
+++++++||+.+++..... ..+. ++.+.....+++++|+|++++.+++++...
T Consensus 155 ~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~~~~~~~~~~~~~~~~ 234 (321)
T 1e6u_A 155 GRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLE 234 (321)
T ss_dssp CCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHHHHHHHHHHHhCccccccc
Confidence 9999999999998743220 0111 222334467899999999999999876542
Q ss_pred -----CcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 180 -----GLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 180 -----~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
+++||++++. .+..|+++.+.+.++.+
T Consensus 235 ~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~ 267 (321)
T 1e6u_A 235 NTQPMLSHINVGTGVDCTIRELAQTIAKVVGYK 267 (321)
T ss_dssp TSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCC
T ss_pred ccccCCceEEeCCCCCccHHHHHHHHHHHhCCC
Confidence 6899998766 59999999999998864
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=158.04 Aligned_cols=178 Identities=14% Similarity=0.066 Sum_probs=134.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCC--C--------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSE--G-------- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~--~-------- 75 (208)
++||+||++++++|+++||+|++++|. .+|++|.+++.++++ ++|+||++++ .
T Consensus 12 GatG~iG~~l~~~L~~~g~~V~~~~r~---------------~~D~~d~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~ 76 (287)
T 3sc6_A 12 GANGQLGKQLQEELNPEEYDIYPFDKK---------------LLDITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKER 76 (287)
T ss_dssp STTSHHHHHHHHHSCTTTEEEEEECTT---------------TSCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCH
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEeccc---------------ccCCCCHHHHHHHHHhcCCCEEEECCcccChHHHhcCH
Confidence 579999999999999999999999982 389999999999998 7999998732 1
Q ss_pred ------------chhhhhhhcCCCeEEEeceeeeccCC--------CCcccccchhHHHhHHHHHHHHHhcCCCEEEEec
Q 028525 76 ------------FISNAGSLKGVQHVILLSQLSVYRGS--------GGIQALMKGNARKLAEQDESMLMASGIPYTIIRT 135 (208)
Q Consensus 76 ------------~~~~a~~~~gv~~~v~~Ss~~~~~~~--------~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp 135 (208)
.+.+++++.++ ||||+||.++|+.. .+..+...+.. .+..+|++++....+++++||
T Consensus 77 ~~~~~~n~~~~~~l~~~~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~--sK~~~E~~~~~~~~~~~ilR~ 153 (287)
T 3sc6_A 77 DLAYVINAIGARNVAVASQLVGA-KLVYISTDYVFQGDRPEGYDEFHNPAPINIYGA--SKYAGEQFVKELHNKYFIVRT 153 (287)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCCCCSSCBCTTSCCCCCSHHHH--HHHHHHHHHHHHCSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-eEEEEchhhhcCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHHHHHhCCCcEEEee
Confidence 03456677788 79999999888532 11222222111 122578888888889999999
Q ss_pred cccccCCCCc------------cceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHHHHH
Q 028525 136 GVLQNTPGGK------------QGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKCFSRL 202 (208)
Q Consensus 136 ~~~~~~~~~~------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~~~ 202 (208)
+.+++..... ..+.+ .++....+++.+|+|++++.+++++. ++.||++++. .+..|+++.+.+.
T Consensus 154 ~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~v~Dva~~~~~~~~~~~--~~~~~i~~~~~~s~~e~~~~i~~~ 230 (287)
T 3sc6_A 154 SWLYGKYGNNFVKTMIRLGKEREEISV-VADQIGSPTYVADLNVMINKLIHTSL--YGTYHVSNTGSCSWFEFAKKIFSY 230 (287)
T ss_dssp CSEECSSSCCHHHHHHHHHTTCSEEEE-ECSCEECCEEHHHHHHHHHHHHTSCC--CEEEECCCBSCEEHHHHHHHHHHH
T ss_pred eeecCCCCCcHHHHHHHHHHcCCCeEe-ecCcccCceEHHHHHHHHHHHHhCCC--CCeEEEcCCCcccHHHHHHHHHHH
Confidence 9998743211 11222 23345678999999999999998876 7899999876 5999999999999
Q ss_pred hhhc
Q 028525 203 MEKT 206 (208)
Q Consensus 203 ~~~~ 206 (208)
.|.+
T Consensus 231 ~g~~ 234 (287)
T 3sc6_A 231 ANMK 234 (287)
T ss_dssp HTCC
T ss_pred cCCC
Confidence 9864
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.8e-22 Score=159.65 Aligned_cols=194 Identities=12% Similarity=0.000 Sum_probs=136.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-----hhhh-------cCCceEEEEcCCCCHHHHHHHhcC--CCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-----AMES-------FGTYVESMAGDASNKKFLKTALRG--VRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-----~~~~-------~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~ 73 (208)
+++|+||++|+++|+++|++|++++|+.+. .... ...+++++.+|++|++++.+++++ +|+||+++
T Consensus 31 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A 110 (375)
T 1t2a_A 31 GITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLG 110 (375)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCCCEEEECC
Confidence 469999999999999999999999998653 2211 124689999999999999999986 69999873
Q ss_pred CC-c---------------------hhhhhhhcCC---CeEEEeceeeeccCCC--------Ccccccchh-HHHhHHHH
Q 028525 74 EG-F---------------------ISNAGSLKGV---QHVILLSQLSVYRGSG--------GIQALMKGN-ARKLAEQD 119 (208)
Q Consensus 74 ~~-~---------------------~~~a~~~~gv---~~~v~~Ss~~~~~~~~--------~~~~~~~~~-~~~~~~~~ 119 (208)
+. . +.+++...++ ++||++||.++|+... +..+...|. .|. .+
T Consensus 111 ~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~---~~ 187 (375)
T 1t2a_A 111 AQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKL---YA 187 (375)
T ss_dssp SCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCCSHHHHHHH---HH
T ss_pred CcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccCCCCCCChhHHHHH---HH
Confidence 21 0 2345666777 7999999998886321 112222211 222 34
Q ss_pred HHHHH----hcCCCEEEEeccccccCCCCcc------------------c-eeeecCCcCCCcccHHHHHHHHHHHhhCC
Q 028525 120 ESMLM----ASGIPYTIIRTGVLQNTPGGKQ------------------G-FQFEEGCAANGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 120 e~~l~----~~~~~~tivRp~~~~~~~~~~~------------------~-~~~~~~~~~~~~v~~~Dva~~~~~~l~~~ 176 (208)
|.+++ +.+++++++||+.+++...... . ..++.+.....+++++|+|++++.+++++
T Consensus 188 e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~ 267 (375)
T 1t2a_A 188 YWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQND 267 (375)
T ss_dssp HHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeeeEEHHHHHHHHHHHHhcC
Confidence 44443 3599999999988775321110 0 11223334467899999999999999876
Q ss_pred CCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 177 PQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 177 ~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
. ++.||++++. .+..|+++.+.+.+|.+
T Consensus 268 ~--~~~~ni~~~~~~s~~e~~~~i~~~~g~~ 296 (375)
T 1t2a_A 268 E--PEDFVIATGEVHSVREFVEKSFLHIGKT 296 (375)
T ss_dssp S--CCCEEECCSCCEEHHHHHHHHHHHTTCC
T ss_pred C--CceEEEeCCCcccHHHHHHHHHHHhCCC
Confidence 5 4789999876 49999999999998764
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-22 Score=160.45 Aligned_cols=194 Identities=12% Similarity=0.088 Sum_probs=136.7
Q ss_pred cccCccHHHHHHHHH-hCCCcEEEEEcCchhh---------hhh------c-----CCc---eEEEEcCCCCHHHHHHHh
Q 028525 8 KRKKMNFRMVILSLI-VKRTRIKALVKDKRNA---------MES------F-----GTY---VESMAGDASNKKFLKTAL 63 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll-~~g~~V~~~~R~~~~~---------~~~------~-----~~~---v~~v~~Dl~d~~~l~~~~ 63 (208)
+++|+||++|+++|+ ++||+|++++|+.... ... . ..+ ++++.+|++|++++.+++
T Consensus 9 GatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 88 (397)
T 1gy8_A 9 GGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNEDFLNGVF 88 (397)
T ss_dssp TTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCHHHHHHHH
Confidence 579999999999999 9999999999975431 111 0 124 899999999999999999
Q ss_pred c--C-CCEEEEcCC-Cc---------------------hhhhhhhcCCCeEEEeceeeeccCCC----------------
Q 028525 64 R--G-VRSIICPSE-GF---------------------ISNAGSLKGVQHVILLSQLSVYRGSG---------------- 102 (208)
Q Consensus 64 ~--~-~d~vi~~~~-~~---------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~---------------- 102 (208)
+ + +|+|||+++ .. +.+++.+.++++||++||.++|+...
T Consensus 89 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~E~~~ 168 (397)
T 1gy8_A 89 TRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAK 168 (397)
T ss_dssp HHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCCCBCTTSC
T ss_pred HhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCcccccccccCcCccCC
Confidence 8 7 999998832 10 23456678899999999998875332
Q ss_pred --CcccccchhHHHhHHHHHHHHH----hcCCCEEEEeccccccCCCC----------cc--------------------
Q 028525 103 --GIQALMKGNARKLAEQDESMLM----ASGIPYTIIRTGVLQNTPGG----------KQ-------------------- 146 (208)
Q Consensus 103 --~~~~~~~~~~~~~~~~~e~~l~----~~~~~~tivRp~~~~~~~~~----------~~-------------------- 146 (208)
+..+|.. .|. .+|.+++ +.+++++++||+.+++.... ..
T Consensus 169 ~~p~~~Y~~--sK~---~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (397)
T 1gy8_A 169 KSPESPYGE--SKL---IAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLT 243 (397)
T ss_dssp CBCSSHHHH--HHH---HHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC----
T ss_pred CCCCCchHH--HHH---HHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHHhcCccc
Confidence 0122222 222 3455444 35999999999999864210 00
Q ss_pred ---------ceee-e------cCCcCCCcccHHHHHHHHHHHhhCCCCC-----C---cEEEEeeCC-cchhhHHHHHHH
Q 028525 147 ---------GFQF-E------EGCAANGSLSKEDAAFICVEALESIPQT-----G---LIFEVVNGE-EKVSDWKKCFSR 201 (208)
Q Consensus 147 ---------~~~~-~------~~~~~~~~v~~~Dva~~~~~~l~~~~~~-----~---~~~~i~~~~-~~~~e~~~~~~~ 201 (208)
.+.+ + .+.....+++++|+|++++.+++.+... + ++||++++. .++.|+++.+.+
T Consensus 244 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~ 323 (397)
T 1gy8_A 244 IHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEVARK 323 (397)
T ss_dssp -------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHHHHHHH
T ss_pred cccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCcccHHHHHHHHHH
Confidence 0000 0 1122246789999999999999765433 3 799998766 599999999999
Q ss_pred Hhhhc
Q 028525 202 LMEKT 206 (208)
Q Consensus 202 ~~~~~ 206 (208)
.++.+
T Consensus 324 ~~g~~ 328 (397)
T 1gy8_A 324 TTGHP 328 (397)
T ss_dssp HHCCC
T ss_pred HhCCC
Confidence 98764
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=157.44 Aligned_cols=191 Identities=14% Similarity=0.033 Sum_probs=135.6
Q ss_pred ccccCccHHHHHHHHHhC--CCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCCCc------
Q 028525 7 MKRKKMNFRMVILSLIVK--RTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSEGF------ 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~--g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~~------ 76 (208)
-+++|+||++|+++|+++ ||+|++++|+.++.. +++++.+|++|++++.++++ ++|+||++++..
T Consensus 5 tGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-----~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~ 79 (317)
T 3ajr_A 5 TGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG-----GIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEK 79 (317)
T ss_dssp ESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT-----TCCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCHHHHHH
T ss_pred EcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc-----CceEEEecCCCHHHHHHHHhhcCCcEEEECCcccCCcccc
Confidence 357999999999999998 899999998765422 57889999999999999998 899999883210
Q ss_pred ---------------hhhhhhhcCCCeEEEeceeeeccCCC------------CcccccchhHHHhHH-HHHHHHHhcCC
Q 028525 77 ---------------ISNAGSLKGVQHVILLSQLSVYRGSG------------GIQALMKGNARKLAE-QDESMLMASGI 128 (208)
Q Consensus 77 ---------------~~~a~~~~gv~~~v~~Ss~~~~~~~~------------~~~~~~~~~~~~~~~-~~e~~l~~~~~ 128 (208)
+.+++.+.++++||++||.++|+... +..+|.. .|...+ .++.+.+..++
T Consensus 80 ~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~p~~~Y~~--sK~~~e~~~~~~~~~~~~ 157 (317)
T 3ajr_A 80 DPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSITITRPRTMFGV--TKIAAELLGQYYYEKFGL 157 (317)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSSSCCCCCSHHHH--HHHHHHHHHHHHHHHHCC
T ss_pred ChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCccccccCCCCchHHH--HHHHHHHHHHHHHHhcCC
Confidence 23456678999999999999886421 1122222 222221 12223345699
Q ss_pred CEEEEeccccccCC---CCc---------------cc-eeeecCCcCCCcccHHHHHHHHHHHhhCCCC---CCcEEEEe
Q 028525 129 PYTIIRTGVLQNTP---GGK---------------QG-FQFEEGCAANGSLSKEDAAFICVEALESIPQ---TGLIFEVV 186 (208)
Q Consensus 129 ~~tivRp~~~~~~~---~~~---------------~~-~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~---~~~~~~i~ 186 (208)
+++++||+.+++.. ... .. ..+..+.....+++++|+|++++.+++++.. .++.||++
T Consensus 158 ~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~g~~~~i~ 237 (317)
T 3ajr_A 158 DVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEADRDKLVLRNGYNVT 237 (317)
T ss_dssp EEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHHHHHHHCCGGGCSSCSCEECC
T ss_pred eEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHHHHHHHhCCccccccCceEecC
Confidence 99999988887632 110 00 1112223345678999999999999987653 35899998
Q ss_pred eCCcchhhHHHHHHHHhh
Q 028525 187 NGEEKVSDWKKCFSRLME 204 (208)
Q Consensus 187 ~~~~~~~e~~~~~~~~~~ 204 (208)
++..+..|+++.+.+..+
T Consensus 238 ~~~~s~~e~~~~i~~~~~ 255 (317)
T 3ajr_A 238 AYTFTPSELYSKIKERIP 255 (317)
T ss_dssp SEEECHHHHHHHHHTTCC
T ss_pred CccccHHHHHHHHHHHCC
Confidence 654688999999988776
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=156.96 Aligned_cols=186 Identities=12% Similarity=0.067 Sum_probs=124.3
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----------
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF---------- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~---------- 76 (208)
-++||+||++|+++|+++||+|++++|++.+. . +..| +...+.++++|+||++++..
T Consensus 6 TGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~------~---~~~~----~~~~~~l~~~d~vihla~~~i~~~~~~~~~ 72 (298)
T 4b4o_A 6 GGGTGFIGTALTQLLNARGHEVTLVSRKPGPG------R---ITWD----ELAASGLPSCDAAVNLAGENILNPLRRWNE 72 (298)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT------E---EEHH----HHHHHCCCSCSEEEECCCCCSSCTTSCCCH
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC------e---eecc----hhhHhhccCCCEEEEeccCcccchhhhhhh
Confidence 36799999999999999999999999986431 1 1222 23345678999999862210
Q ss_pred ----------------hhhhhhhcCC--CeEEEeceeeeccCCC--------CcccccchhHHHhHHHHHHHHHhcCCCE
Q 028525 77 ----------------ISNAGSLKGV--QHVILLSQLSVYRGSG--------GIQALMKGNARKLAEQDESMLMASGIPY 130 (208)
Q Consensus 77 ----------------~~~a~~~~gv--~~~v~~Ss~~~~~~~~--------~~~~~~~~~~~~~~~~~e~~l~~~~~~~ 130 (208)
+.++++..++ ++||++||.++|+... +..+...+.......+.+......++++
T Consensus 73 ~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~p~~~~~~~~~~~~~~e~~~~~~~~~~~~ 152 (298)
T 4b4o_A 73 TFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDSPGGDFDFFSNLVTKWEAAARLPGDSTRQ 152 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTCCCSCSSHHHHHHHHHHHHHCCSSSSSEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccCCccccchhHHHHHHHHHHHHhhccCCce
Confidence 1233445554 4688889998886321 1111111111111111222233468999
Q ss_pred EEEeccccccCCCC-----------ccceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCc-chhhHHHH
Q 028525 131 TIIRTGVLQNTPGG-----------KQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEE-KVSDWKKC 198 (208)
Q Consensus 131 tivRp~~~~~~~~~-----------~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~-~~~e~~~~ 198 (208)
+++||+.+++..+. +....++.+.+...+||++|+++++..+++++... ..||++++.. +.+|+++.
T Consensus 153 ~~~r~~~v~g~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~ihv~Dva~a~~~~~~~~~~~-g~yn~~~~~~~t~~e~~~~ 231 (298)
T 4b4o_A 153 VVVRSGVVLGRGGGAMGHMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILTHALEANHVH-GVLNGVAPSSATNAEFAQT 231 (298)
T ss_dssp EEEEECEEECTTSHHHHHHHHHHHTTCCCCBTTSCSBCCEEEHHHHHHHHHHHHHCTTCC-EEEEESCSCCCBHHHHHHH
T ss_pred eeeeeeeEEcCCCCchhHHHHHHhcCCcceecccCceeecCcHHHHHHHHHHHHhCCCCC-CeEEEECCCccCHHHHHHH
Confidence 99999999875321 11122445566688999999999999999987654 5999998664 99999999
Q ss_pred HHHHhhhc
Q 028525 199 FSRLMEKT 206 (208)
Q Consensus 199 ~~~~~~~~ 206 (208)
+++.++++
T Consensus 232 ia~~lgrp 239 (298)
T 4b4o_A 232 FGAALGRR 239 (298)
T ss_dssp HHHHHTCC
T ss_pred HHHHhCcC
Confidence 99999875
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-22 Score=159.31 Aligned_cols=189 Identities=14% Similarity=0.069 Sum_probs=135.2
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCchhh-hhhcCCceEEEEcCCCCHHHHHHHhc-----CCCEEEEcCC--C---
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKRNA-MESFGTYVESMAGDASNKKFLKTALR-----GVRSIICPSE--G--- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~-~~~~~~~v~~v~~Dl~d~~~l~~~~~-----~~d~vi~~~~--~--- 75 (208)
++||+||++|+++|+++| ++|++++|+.... .... .++. +.+|++|.+.+.++++ ++|+||++++ .
T Consensus 53 GatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~-~~~~-~~~d~~~~~~~~~~~~~~~~~~~d~Vih~A~~~~~~~ 130 (357)
T 2x6t_A 53 GGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNL-VDLN-IADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTE 130 (357)
T ss_dssp TTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGGGGT-TTSC-CSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCCCTTC
T ss_pred CCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchhhcc-cCce-EeeecCcHHHHHHHHhhcccCCCCEEEECCcccCCcc
Confidence 469999999999999999 9999999986552 1111 2344 7799999999999997 4999998722 1
Q ss_pred -c--------------hhhhhhhcCCCeEEEeceeeeccCCCC-----------cccccchhHHHhHHHHHHHHHh----
Q 028525 76 -F--------------ISNAGSLKGVQHVILLSQLSVYRGSGG-----------IQALMKGNARKLAEQDESMLMA---- 125 (208)
Q Consensus 76 -~--------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~-----------~~~~~~~~~~~~~~~~e~~l~~---- 125 (208)
. +.+++...++ +||++||.++|+.... ..+|.. .|. .+|.+++.
T Consensus 131 ~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~--sK~---~~E~~~~~~~~~ 204 (357)
T 2x6t_A 131 WDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVFGY--SKF---LFDEYVRQILPE 204 (357)
T ss_dssp CCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGCSCSSCCCSSGGGCCCSSHHHH--HHH---HHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcchHHhCCCCCCCcCCcCCCCCCChhHH--HHH---HHHHHHHHHHHH
Confidence 0 2345667788 9999999988863221 112221 222 34555543
Q ss_pred cCCCEEEEeccccccCCCC------c------------cce-eeecCCc-CCCcccHHHHHHHHHHHhhCCCCCCcEEEE
Q 028525 126 SGIPYTIIRTGVLQNTPGG------K------------QGF-QFEEGCA-ANGSLSKEDAAFICVEALESIPQTGLIFEV 185 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~------~------------~~~-~~~~~~~-~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i 185 (208)
.+++++++||+.+++.... . ... .++.+.. ...+++++|+|++++.+++++. ++.||+
T Consensus 205 ~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~--~~~~~i 282 (357)
T 2x6t_A 205 ANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV--SGIFNL 282 (357)
T ss_dssp CSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHHHHHHHHHCC--CEEEEE
T ss_pred cCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHHHHHHHhcCC--CCeEEe
Confidence 4899999999999864321 0 001 1122223 4467899999999999998766 889999
Q ss_pred eeCC-cchhhHHHHHHHHhhhc
Q 028525 186 VNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 186 ~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
+++. .+..|+++.+.+.++.+
T Consensus 283 ~~~~~~s~~e~~~~i~~~~g~~ 304 (357)
T 2x6t_A 283 GTGRAESFQAVADATLAYHKKG 304 (357)
T ss_dssp SCSCCEEHHHHHHHHHHHHTCC
T ss_pred cCCCcccHHHHHHHHHHHcCCC
Confidence 8766 59999999999998864
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=158.46 Aligned_cols=191 Identities=15% Similarity=0.067 Sum_probs=128.9
Q ss_pred ccccCccHHHHHHHHHhCC-CcEEEEEcCchhh--hhhcCCceEEEEcCCCCHHHHHHHhcC-----CCEEEEcCC--C-
Q 028525 7 MKRKKMNFRMVILSLIVKR-TRIKALVKDKRNA--MESFGTYVESMAGDASNKKFLKTALRG-----VRSIICPSE--G- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~--~~~~~~~v~~v~~Dl~d~~~l~~~~~~-----~d~vi~~~~--~- 75 (208)
-++||+||++|+++|+++| ++|++++|+.+.. .... ++. +.+|++|.+.+.+++++ +|+||++++ .
T Consensus 5 tGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~--~~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~~~~~ 81 (310)
T 1eq2_A 5 TGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLV--DLN-IADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSST 81 (310)
T ss_dssp ETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHH--TSC-CSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCCCT
T ss_pred EcCccHHHHHHHHHHHHCCCcEEEEEccCCCCchhhhcC--cce-eccccccHHHHHHHHhccccCCCcEEEECcccccC
Confidence 4679999999999999999 9999999987642 1111 234 77999999999999985 899998722 1
Q ss_pred ---c--------------hhhhhhhcCCCeEEEeceeeeccCCCC--------cccccchh-HHHhHHHHHHHHHh----
Q 028525 76 ---F--------------ISNAGSLKGVQHVILLSQLSVYRGSGG--------IQALMKGN-ARKLAEQDESMLMA---- 125 (208)
Q Consensus 76 ---~--------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~--------~~~~~~~~-~~~~~~~~e~~l~~---- 125 (208)
. +.+++.+.++ |||++||.++|+.... ..+...+. .|. .+|.+++.
T Consensus 82 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~---~~e~~~~~~~~~ 157 (310)
T 1eq2_A 82 TEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKF---LFDEYVRQILPE 157 (310)
T ss_dssp TCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHHH---HHHHHHHHHGGG
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeHHHhCCCCCCCCCCCCCCCCCChhHHHHH---HHHHHHHHHHHH
Confidence 0 2345667788 9999999988863221 11111111 222 35565553
Q ss_pred cCCCEEEEeccccccCCCC------c------------cce-eeecCCc-CCCcccHHHHHHHHHHHhhCCCCCCcEEEE
Q 028525 126 SGIPYTIIRTGVLQNTPGG------K------------QGF-QFEEGCA-ANGSLSKEDAAFICVEALESIPQTGLIFEV 185 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~------~------------~~~-~~~~~~~-~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i 185 (208)
.+++++++||+.+++.... . ..+ .++.+.. ...+++++|+|++++.+++++. ++.||+
T Consensus 158 ~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~~~~~--~~~~~i 235 (310)
T 1eq2_A 158 ANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV--SGIFNL 235 (310)
T ss_dssp CSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCC--CEEEEE
T ss_pred cCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHHHHhcCC--CCeEEE
Confidence 4899999999999865321 0 001 1222334 5578999999999999998776 889999
Q ss_pred eeCC-cchhhHHHHHHHHhhhc
Q 028525 186 VNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 186 ~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
+++. .+..|+++.+.+.++.+
T Consensus 236 ~~~~~~s~~e~~~~i~~~~g~~ 257 (310)
T 1eq2_A 236 GTGRAESFQAVADATLAYHKKG 257 (310)
T ss_dssp SCSCCBCHHHHHHHC-------
T ss_pred eCCCccCHHHHHHHHHHHcCCC
Confidence 8765 59999999999988764
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-21 Score=154.31 Aligned_cols=196 Identities=10% Similarity=0.048 Sum_probs=138.4
Q ss_pred ccccCccHHHHHHHHHhC-CCcEEEEEcCch--h---hhhhc-CCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCCC-c
Q 028525 7 MKRKKMNFRMVILSLIVK-RTRIKALVKDKR--N---AMESF-GTYVESMAGDASNKKFLKTALR--GVRSIICPSEG-F 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~-g~~V~~~~R~~~--~---~~~~~-~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~-~ 76 (208)
-+++|+||++|+++|+++ |++|++++|+.. . ..... ..+++++.+|++|++++.++++ ++|+|||+++. .
T Consensus 6 TGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~ 85 (361)
T 1kew_A 6 TGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESH 85 (361)
T ss_dssp ESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCC
T ss_pred ECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEECCCCcC
Confidence 357999999999999998 799999999752 1 11111 2468999999999999999998 89999988321 0
Q ss_pred ---------------------hhhhhhhc--CCC-------eEEEeceeeeccCCC------------------Cccccc
Q 028525 77 ---------------------ISNAGSLK--GVQ-------HVILLSQLSVYRGSG------------------GIQALM 108 (208)
Q Consensus 77 ---------------------~~~a~~~~--gv~-------~~v~~Ss~~~~~~~~------------------~~~~~~ 108 (208)
+.+++... +++ +||++||.++|+... +..+..
T Consensus 86 ~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~~~~~~~~ 165 (361)
T 1kew_A 86 VDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSS 165 (361)
T ss_dssp HHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSCCCCCS
T ss_pred hhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCCCCCCCCC
Confidence 23445556 887 999999988875321 111211
Q ss_pred chh-HHHhHHHHHHHHH----hcCCCEEEEeccccccCCCCcc--------------cee-eecCCcCCCcccHHHHHHH
Q 028525 109 KGN-ARKLAEQDESMLM----ASGIPYTIIRTGVLQNTPGGKQ--------------GFQ-FEEGCAANGSLSKEDAAFI 168 (208)
Q Consensus 109 ~~~-~~~~~~~~e~~l~----~~~~~~tivRp~~~~~~~~~~~--------------~~~-~~~~~~~~~~v~~~Dva~~ 168 (208)
.+. .|. .+|.+++ +.+++++++||+.+++...... .+. ++.+.....+++++|+|++
T Consensus 166 ~Y~~sK~---~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 242 (361)
T 1kew_A 166 PYSASKA---SSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARA 242 (361)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHH
T ss_pred ccHHHHH---HHHHHHHHHHHHhCCcEEEEeeceeECCCCCcccHHHHHHHHHHcCCCceEcCCCceeEeeEEHHHHHHH
Confidence 111 222 3455444 3599999999999987542110 111 1222333567899999999
Q ss_pred HHHHhhCCCCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 169 CVEALESIPQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 169 ~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
++.+++++ ..++.|+++++. .+..|+++.+.+.++.+
T Consensus 243 ~~~~~~~~-~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~ 280 (361)
T 1kew_A 243 LHMVVTEG-KAGETYNIGGHNEKKNLDVVFTICDLLDEI 280 (361)
T ss_dssp HHHHHHHC-CTTCEEEECCCCEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CCCCEEEecCCCeeeHHHHHHHHHHHhCCc
Confidence 99999765 457899999876 59999999999998864
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=9.5e-22 Score=153.17 Aligned_cols=177 Identities=15% Similarity=0.082 Sum_probs=132.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCCC-c--------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSEG-F-------- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~-~-------- 76 (208)
++||+||++|+++|+++||+|++++|+ .+|++|++++.++++ ++|+||++++. .
T Consensus 19 GatG~iG~~l~~~L~~~g~~V~~~~r~---------------~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~ 83 (292)
T 1vl0_A 19 GANGQLGREIQKQLKGKNVEVIPTDVQ---------------DLDITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQY 83 (292)
T ss_dssp STTSHHHHHHHHHHTTSSEEEEEECTT---------------TCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCH
T ss_pred CCCChHHHHHHHHHHhCCCeEEeccCc---------------cCCCCCHHHHHHHHHhcCCCEEEECCccCCHHHHhcCH
Confidence 579999999999999999999999986 379999999999998 79999988321 0
Q ss_pred -------------hhhhhhhcCCCeEEEeceeeeccCCC--------CcccccchhHHHhHHHHHHHHHhcCCCEEEEec
Q 028525 77 -------------ISNAGSLKGVQHVILLSQLSVYRGSG--------GIQALMKGNARKLAEQDESMLMASGIPYTIIRT 135 (208)
Q Consensus 77 -------------~~~a~~~~gv~~~v~~Ss~~~~~~~~--------~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp 135 (208)
+.+++...++ |||++||.++|+... +..+...+.. .+..+|.+++....+++++||
T Consensus 84 ~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS~~v~~~~~~~~~~E~~~~~~~~~Y~~--sK~~~E~~~~~~~~~~~~lR~ 160 (292)
T 1vl0_A 84 DLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGK--TKLEGENFVKALNPKYYIVRT 160 (292)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCCSSCBCTTSCCCCCSHHHH--HHHHHHHHHHHHCSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-eEEEechHHeECCCCCCCCCCCCCCCCccHHHH--HHHHHHHHHHhhCCCeEEEee
Confidence 2345666788 999999998876321 1112211111 122568888887889999999
Q ss_pred cccccCCCCc------------cceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHHHHH
Q 028525 136 GVLQNTPGGK------------QGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKCFSRL 202 (208)
Q Consensus 136 ~~~~~~~~~~------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~~~ 202 (208)
+.+++. ... ..+.. .++....+++++|+|++++.+++++ .++.|+++++. .+..|+++.+.+.
T Consensus 161 ~~v~G~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~v~Dva~~~~~~~~~~--~~~~~~i~~~~~~s~~e~~~~i~~~ 236 (292)
T 1vl0_A 161 AWLYGD-GNNFVKTMINLGKTHDELKV-VHDQVGTPTSTVDLARVVLKVIDEK--NYGTFHCTCKGICSWYDFAVEIFRL 236 (292)
T ss_dssp CSEESS-SSCHHHHHHHHHHHCSEEEE-ESSCEECCEEHHHHHHHHHHHHHHT--CCEEEECCCBSCEEHHHHHHHHHHH
T ss_pred eeeeCC-CcChHHHHHHHHhcCCcEEe-ecCeeeCCccHHHHHHHHHHHHhcC--CCcEEEecCCCCccHHHHHHHHHHH
Confidence 999854 221 01111 1233467789999999999999876 67899999765 5999999999999
Q ss_pred hhhc
Q 028525 203 MEKT 206 (208)
Q Consensus 203 ~~~~ 206 (208)
++.+
T Consensus 237 ~g~~ 240 (292)
T 1vl0_A 237 TGID 240 (292)
T ss_dssp HCCC
T ss_pred hCCC
Confidence 8864
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=154.38 Aligned_cols=187 Identities=16% Similarity=0.168 Sum_probs=137.2
Q ss_pred cccCccHHHHHHHHHhC-CC-cEEEEEcCchhhhh----hcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc-----
Q 028525 8 KRKKMNFRMVILSLIVK-RT-RIKALVKDKRNAME----SFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF----- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~-g~-~V~~~~R~~~~~~~----~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~----- 76 (208)
++||+||++++++|+++ |+ +|++++|++.+... ....+++++.+|++|.+++.++++++|+||++++-.
T Consensus 28 GatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~Aa~~~~~~~ 107 (344)
T 2gn4_A 28 GGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHAAALKHVPIA 107 (344)
T ss_dssp TTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEECCCCCCHHHH
T ss_pred CCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEECCCCCCCCch
Confidence 36999999999999999 97 99999998766322 123579999999999999999999999999883210
Q ss_pred -----------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHh-------cCCCEEE
Q 028525 77 -----------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMA-------SGIPYTI 132 (208)
Q Consensus 77 -----------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~-------~~~~~ti 132 (208)
+.+++...++++||++||..++. +..+|.. .|. .+|.+++. .++++++
T Consensus 108 ~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~~---p~~~Y~~--sK~---~~E~~~~~~~~~~~~~g~~~~~ 179 (344)
T 2gn4_A 108 EYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAAN---PINLYGA--TKL---CSDKLFVSANNFKGSSQTQFSV 179 (344)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSS---CCSHHHH--HHH---HHHHHHHHGGGCCCSSCCEEEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccCC---CccHHHH--HHH---HHHHHHHHHHHHhCCCCcEEEE
Confidence 23456778999999999987654 2344543 222 34666653 4799999
Q ss_pred EeccccccCCCC-----------cc-ceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCcchhhHHHHHH
Q 028525 133 IRTGVLQNTPGG-----------KQ-GFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVSDWKKCFS 200 (208)
Q Consensus 133 vRp~~~~~~~~~-----------~~-~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~~~~e~~~~~~ 200 (208)
+|||.+++.... +. .+.+..+.....+++.+|+|++++.+++++. .+++|++.++..++.|+++.+.
T Consensus 180 vRpg~v~g~~~~~i~~~~~~~~~g~~~~~i~~~~~~r~~i~v~D~a~~v~~~l~~~~-~g~~~~~~~~~~s~~el~~~i~ 258 (344)
T 2gn4_A 180 VRYGNVVGSRGSVVPFFKKLVQNKASEIPITDIRMTRFWITLDEGVSFVLKSLKRMH-GGEIFVPKIPSMKMTDLAKALA 258 (344)
T ss_dssp ECCCEETTCTTSHHHHHHHHHHHTCCCEEESCTTCEEEEECHHHHHHHHHHHHHHCC-SSCEEEECCCEEEHHHHHHHHC
T ss_pred EEeccEECCCCCHHHHHHHHHHcCCCceEEeCCCeEEeeEEHHHHHHHHHHHHhhcc-CCCEEecCCCcEEHHHHHHHHH
Confidence 999999864321 11 2223222223457899999999999998654 5789998766568899998887
Q ss_pred HHh
Q 028525 201 RLM 203 (208)
Q Consensus 201 ~~~ 203 (208)
+..
T Consensus 259 ~~~ 261 (344)
T 2gn4_A 259 PNT 261 (344)
T ss_dssp TTC
T ss_pred HhC
Confidence 543
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=157.34 Aligned_cols=185 Identities=9% Similarity=0.058 Sum_probs=130.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCC--C--------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG--VRSIICPSE--G-------- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~--~-------- 75 (208)
++||+||++|+++|+++|+ +.... ...++++.+|++|++++.+++++ +|+|||+++ +
T Consensus 13 GatG~iG~~l~~~L~~~g~------~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~ 81 (319)
T 4b8w_A 13 GGSGLVGKAIQKVVADGAG------LPGED-----WVFVSSKDADLTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIKY 81 (319)
T ss_dssp TCSSHHHHHHHHHHHTTTC------CTTCE-----EEECCTTTCCTTSHHHHHHHHHHSCCSEEEECCCCCCCHHHHTTC
T ss_pred CCCcHHHHHHHHHHHhcCC------ccccc-----ccccCceecccCCHHHHHHHHhhcCCCEEEECceecccccccccC
Confidence 5799999999999999998 21111 12456668999999999999987 899998722 1
Q ss_pred -------------chhhhhhhcCCCeEEEeceeeeccCCC------------Cccccc-chh-HHHhHHHHHHHHH----
Q 028525 76 -------------FISNAGSLKGVQHVILLSQLSVYRGSG------------GIQALM-KGN-ARKLAEQDESMLM---- 124 (208)
Q Consensus 76 -------------~~~~a~~~~gv~~~v~~Ss~~~~~~~~------------~~~~~~-~~~-~~~~~~~~e~~l~---- 124 (208)
.+.+++++.+++||||+||.++|+... +..+.. .+. .|. .+|++++
T Consensus 82 ~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~---~~E~~~~~~~~ 158 (319)
T 4b8w_A 82 NLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKR---MIDVQNRAYFQ 158 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGGGGBSCCCSSSHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCccccccccCCCCCCcchHHHHHH---HHHHHHHHHHH
Confidence 034567788999999999999886321 111111 011 222 3455443
Q ss_pred hcCCCEEEEeccccccCCCCc----------------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCC-CCC
Q 028525 125 ASGIPYTIIRTGVLQNTPGGK----------------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIP-QTG 180 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~----------------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~~~ 180 (208)
..+++++++||+.+++..... ..+. ++.+.....+++++|+|++++.+++++. ..+
T Consensus 159 ~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~ 238 (319)
T 4b8w_A 159 QYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEP 238 (319)
T ss_dssp HHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEEHHHHHHHHHHHHHHCCCSSC
T ss_pred hhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCeeEEEEeHHHHHHHHHHHHhccccCCc
Confidence 479999999999998743210 0111 1223344577999999999999998754 457
Q ss_pred cEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 181 LIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 181 ~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
++||++++. .+..|+++.+.+..|.+
T Consensus 239 ~~~ni~~~~~~s~~e~~~~i~~~~g~~ 265 (319)
T 4b8w_A 239 IILSVGEEDEVSIKEAAEAVVEAMDFH 265 (319)
T ss_dssp EEECCCGGGCEEHHHHHHHHHHHTTCC
T ss_pred eEEEecCCCceeHHHHHHHHHHHhCCC
Confidence 899999766 49999999999999865
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-22 Score=154.17 Aligned_cols=184 Identities=18% Similarity=0.126 Sum_probs=135.1
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCC--C------c
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG--VRSIICPSE--G------F 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~--~------~ 76 (208)
-++||+||++|+++|+ +||+|++++|+.. ++.+|++|++++.+++++ +|+||++++ . .
T Consensus 6 tGatG~iG~~l~~~L~-~g~~V~~~~r~~~-----------~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~ 73 (299)
T 1n2s_A 6 FGKTGQVGWELQRSLA-PVGNLIALDVHSK-----------EFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESE 73 (299)
T ss_dssp ECTTSHHHHHHHHHTT-TTSEEEEECTTCS-----------SSCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTC
T ss_pred ECCCCHHHHHHHHHhh-cCCeEEEeccccc-----------cccccCCCHHHHHHHHHhcCCCEEEECcccCCHhhhhcC
Confidence 3679999999999999 8999999999762 357899999999999986 999998732 1 0
Q ss_pred --------------hhhhhhhcCCCeEEEeceeeeccCCC--------CcccccchhHHHhHHHHHHHHHhcCCCEEEEe
Q 028525 77 --------------ISNAGSLKGVQHVILLSQLSVYRGSG--------GIQALMKGNARKLAEQDESMLMASGIPYTIIR 134 (208)
Q Consensus 77 --------------~~~a~~~~gv~~~v~~Ss~~~~~~~~--------~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivR 134 (208)
+.++++..++ ||||+||.++|+... +..+...+.. .+..+|++++....+++++|
T Consensus 74 ~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~--sK~~~E~~~~~~~~~~~ilR 150 (299)
T 1n2s_A 74 PELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETDATSPLNVYGK--TKLAGEKALQDNCPKHLIFR 150 (299)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTSCCCCSSHHHH--HHHHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccEEeCCCCCCCCCCCCCCCccHHHH--HHHHHHHHHHHhCCCeEEEe
Confidence 2345666777 899999998876321 1112111111 12256888888777999999
Q ss_pred ccccccCCCCc------------cceeeecCCcCCCcccHHHHHHHHHHHhhCCC--C-CCcEEEEeeCC-cchhhHHHH
Q 028525 135 TGVLQNTPGGK------------QGFQFEEGCAANGSLSKEDAAFICVEALESIP--Q-TGLIFEVVNGE-EKVSDWKKC 198 (208)
Q Consensus 135 p~~~~~~~~~~------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~-~~~~~~i~~~~-~~~~e~~~~ 198 (208)
|+.+++..... ..+.. .++....+++.+|+|++++.+++++. . .++.||++++. .+..|+++.
T Consensus 151 p~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~ 229 (299)
T 1n2s_A 151 TSWVYAGKGNNFAKTMLRLAKERQTLSV-INDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAAL 229 (299)
T ss_dssp ECSEECSSSCCHHHHHHHHHHHCSEEEE-ECSCEECCEEHHHHHHHHHHHHHHHHHCGGGCEEEECCCBSCEEHHHHHHH
T ss_pred eeeecCCCcCcHHHHHHHHHhcCCCEEe-ecCcccCCeeHHHHHHHHHHHHHHhccccccCceEEEeCCCCCCHHHHHHH
Confidence 99998753221 11111 22344678899999999999998762 3 47899999866 599999999
Q ss_pred HHHHhhhc
Q 028525 199 FSRLMEKT 206 (208)
Q Consensus 199 ~~~~~~~~ 206 (208)
+.+.+|.+
T Consensus 230 i~~~~g~~ 237 (299)
T 1n2s_A 230 VFDEARKA 237 (299)
T ss_dssp HHHHHHHH
T ss_pred HHHHhCCC
Confidence 99998875
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.4e-22 Score=161.41 Aligned_cols=185 Identities=15% Similarity=0.136 Sum_probs=130.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh------------------hhhcCCceEEEEcCCCCHHHHHHHhcCCCEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA------------------MESFGTYVESMAGDASNKKFLKTALRGVRSI 69 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~------------------~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~v 69 (208)
++||+||++|+++|+++|++|++++|+.++. ......++.++.+|++|++++. ++.++|+|
T Consensus 76 GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-~~~~~d~V 154 (427)
T 4f6c_A 76 GATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-LPENMDTI 154 (427)
T ss_dssp CTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC-CSSCCSEE
T ss_pred cCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC-CcCCCCEE
Confidence 4699999999999999999999999998721 1112357999999999988888 77889999
Q ss_pred EEcCCCc-------------------hhhhhhhcCCCeEEEeceeeeccCC-------------------CCcccccchh
Q 028525 70 ICPSEGF-------------------ISNAGSLKGVQHVILLSQLSVYRGS-------------------GGIQALMKGN 111 (208)
Q Consensus 70 i~~~~~~-------------------~~~a~~~~gv~~~v~~Ss~~~~~~~-------------------~~~~~~~~~~ 111 (208)
|++++.. +.+++.. ++++||++||.++ +.. .+...|..
T Consensus 155 ih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~~~~~~~~~Y~~-- 230 (427)
T 4f6c_A 155 IHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYKGQLLTSPYTR-- 230 (427)
T ss_dssp EECCCCC-------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGG-GSEECSSCSCCEECTTCSCSSCCCCSHHHH--
T ss_pred EECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHh-CCCccCCCCCccccccccccCCCCCCchHH--
Confidence 9873210 2345555 7899999999887 210 01122221
Q ss_pred HHHhHHHHHHHHHh---cCCCEEEEeccccccCCCCcc---------------------ceeeecCCcCCCcccHHHHHH
Q 028525 112 ARKLAEQDESMLMA---SGIPYTIIRTGVLQNTPGGKQ---------------------GFQFEEGCAANGSLSKEDAAF 167 (208)
Q Consensus 112 ~~~~~~~~e~~l~~---~~~~~tivRp~~~~~~~~~~~---------------------~~~~~~~~~~~~~v~~~Dva~ 167 (208)
.|. .+|.+++. .+++++++|||.+++...... .+..+.++....+++++|+|+
T Consensus 231 sK~---~~E~~~~~~~~~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~DvA~ 307 (427)
T 4f6c_A 231 SKF---YSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTAR 307 (427)
T ss_dssp HHH---HHHHHHHHHHHTTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEHHHHTCEECCEEHHHHHH
T ss_pred HHH---HHHHHHHHHHHcCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCCccccceEEEeeHHHHHH
Confidence 222 35666654 799999999999987543221 000111234466899999999
Q ss_pred HHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHHHH
Q 028525 168 ICVEALESIPQTGLIFEVVNGE-EKVSDWKKCFSR 201 (208)
Q Consensus 168 ~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~~ 201 (208)
+++.++..+. .+++||++++. .+..|+++.+.+
T Consensus 308 ai~~~~~~~~-~g~~~~l~~~~~~s~~el~~~i~~ 341 (427)
T 4f6c_A 308 QIVALAQVNT-PQIIYHVLSPNKMPVKSLLECVKR 341 (427)
T ss_dssp HHHHHTTSCC-CCSEEEESCSCCEEHHHHHHHHHS
T ss_pred HHHHHHcCCC-CCCEEEecCCCCCcHHHHHHHHHH
Confidence 9999998877 88999999866 489999998876
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-22 Score=154.02 Aligned_cols=180 Identities=12% Similarity=-0.042 Sum_probs=129.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC----c-------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG----F------- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~----~------- 76 (208)
+.||+||++|+++|+++||+|++++|++.+.. ..+++++.+|++|++++.++++++|+||++++. .
T Consensus 9 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~ 85 (267)
T 3ay3_A 9 GAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA---EAHEEIVACDLADAQAVHDLVKDCDGIIHLGGVSVERPWNDILQA 85 (267)
T ss_dssp STTSHHHHHHGGGGGGTEEEEEECCSSCCCCC---CTTEEECCCCTTCHHHHHHHHTTCSEEEECCSCCSCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc---CCCccEEEccCCCHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHH
Confidence 57999999999999999999999999876422 246899999999999999999999999987321 1
Q ss_pred -------hhhhhhhcCCCeEEEeceeeeccCCC------------CcccccchhHHHhHHHHHHHH----HhcCCCEEEE
Q 028525 77 -------ISNAGSLKGVQHVILLSQLSVYRGSG------------GIQALMKGNARKLAEQDESML----MASGIPYTII 133 (208)
Q Consensus 77 -------~~~a~~~~gv~~~v~~Ss~~~~~~~~------------~~~~~~~~~~~~~~~~~e~~l----~~~~~~~tiv 133 (208)
+.+++...+++|||++||..+++... +..+|.. .|. .+|.++ +..+++++++
T Consensus 86 n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~~~~~~~~~Y~~--sK~---~~e~~~~~~~~~~gi~~~~l 160 (267)
T 3ay3_A 86 NIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGL--SKC---FGEDLASLYYHKFDIETLNI 160 (267)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTTSCCCCCSHHHH--HHH---HHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCCCCCCCCChHHH--HHH---HHHHHHHHHHHHcCCCEEEE
Confidence 23456678899999999998875321 1122222 222 234444 3469999999
Q ss_pred eccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCc-chhhHHHHHHHHhhh
Q 028525 134 RTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEE-KVSDWKKCFSRLMEK 205 (208)
Q Consensus 134 Rp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~-~~~e~~~~~~~~~~~ 205 (208)
||+.+++.+..+ .....+++.+|+|++++.+++++...+..|++.++.. +..++.++ +.+|.
T Consensus 161 rp~~v~~~~~~~--------~~~~~~~~~~dva~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~lg~ 223 (267)
T 3ay3_A 161 RIGSCFPKPKDA--------RMMATWLSVDDFMRLMKRAFVAPKLGCTVVYGASANTESWWDNDKS--AFLGW 223 (267)
T ss_dssp EECBCSSSCCSH--------HHHHHBCCHHHHHHHHHHHHHSSCCCEEEEEECCSCSSCCBCCGGG--GGGCC
T ss_pred eceeecCCCCCC--------CeeeccccHHHHHHHHHHHHhCCCCCceeEecCCCccccccCHHHH--HHcCC
Confidence 999987433211 1224578999999999999988765567788775443 55555554 44443
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=155.17 Aligned_cols=194 Identities=9% Similarity=0.022 Sum_probs=132.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------cCCceEEE-EcCCCCHHHHHHHhcCCCEEEEcCC--C--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------FGTYVESM-AGDASNKKFLKTALRGVRSIICPSE--G-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~~~~v~~v-~~Dl~d~~~l~~~~~~~d~vi~~~~--~-- 75 (208)
+++|+||++|+++|+++||+|++++|+.++.... .+.+++++ .+|++|++++.++++++|+|||+++ .
T Consensus 18 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A~~~~~~ 97 (342)
T 1y1p_A 18 GANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFS 97 (342)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEECCCCCSCC
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEEEeCCCCCCC
Confidence 4699999999999999999999999987653211 12468888 8999999999999999999998732 1
Q ss_pred -c--------------hhhhhh-hcCCCeEEEeceeeeccCCCC----------------------------cccccchh
Q 028525 76 -F--------------ISNAGS-LKGVQHVILLSQLSVYRGSGG----------------------------IQALMKGN 111 (208)
Q Consensus 76 -~--------------~~~a~~-~~gv~~~v~~Ss~~~~~~~~~----------------------------~~~~~~~~ 111 (208)
. +.+++. ..+++|||++||.+++....+ ..+...|.
T Consensus 98 ~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 177 (342)
T 1y1p_A 98 NKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYA 177 (342)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSCTTSTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhccccccccccchHHHH
Confidence 0 234454 357899999999988632110 01111111
Q ss_pred -HHHhHHHHHHHHHh------cCCCEEEEeccccccCCCCcc----ce-------------e-eecCCcCCCcccHHHHH
Q 028525 112 -ARKLAEQDESMLMA------SGIPYTIIRTGVLQNTPGGKQ----GF-------------Q-FEEGCAANGSLSKEDAA 166 (208)
Q Consensus 112 -~~~~~~~~e~~l~~------~~~~~tivRp~~~~~~~~~~~----~~-------------~-~~~~~~~~~~v~~~Dva 166 (208)
.|. .+|.+++. .+++++++||+.+++...... .+ . ++. .....+++++|+|
T Consensus 178 ~sK~---~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~Dva 253 (342)
T 1y1p_A 178 ASKT---EAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALAL-MPPQYYVSAVDIG 253 (342)
T ss_dssp HHHH---HHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHT-CCSEEEEEHHHHH
T ss_pred HHHH---HHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCcccccc-CCcCCEeEHHHHH
Confidence 222 34554432 278899999999886432110 00 0 111 1234678999999
Q ss_pred HHHHHHhhCCCCCCcEEEEeeCCcchhhHHHHHHHHhhh
Q 028525 167 FICVEALESIPQTGLIFEVVNGEEKVSDWKKCFSRLMEK 205 (208)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~ 205 (208)
++++.+++++...++.+...++..+..|+++.+.+..+.
T Consensus 254 ~a~~~~~~~~~~~g~~~~~~g~~~s~~e~~~~i~~~~~~ 292 (342)
T 1y1p_A 254 LLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPS 292 (342)
T ss_dssp HHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCcccCCceEEEeCCCCCHHHHHHHHHHHCCC
Confidence 999999987655565554443446999999999998875
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=152.02 Aligned_cols=195 Identities=10% Similarity=-0.035 Sum_probs=133.8
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhh-----hhhc------CCceEEEEcCCCCHHHHHHHhcC--CCEEEEcC
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNA-----MESF------GTYVESMAGDASNKKFLKTALRG--VRSIICPS 73 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-----~~~~------~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~ 73 (208)
-+++|+||++++++|+++|++|++++|+.++. .... ..+++++.+|++|++++.+++++ +|+|||++
T Consensus 7 tGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A 86 (372)
T 1db3_A 7 TGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNLG 86 (372)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSEEEECC
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCCEEEECC
Confidence 46799999999999999999999999986531 1111 24688999999999999999985 69999872
Q ss_pred CC--------c--------------hhhhhhhcCC---CeEEEeceeeeccCCC--------Ccccccchh-HHHhHHHH
Q 028525 74 EG--------F--------------ISNAGSLKGV---QHVILLSQLSVYRGSG--------GIQALMKGN-ARKLAEQD 119 (208)
Q Consensus 74 ~~--------~--------------~~~a~~~~gv---~~~v~~Ss~~~~~~~~--------~~~~~~~~~-~~~~~~~~ 119 (208)
+. . +.+++...++ ++||++||.++|+... +..+...+. .|. .+
T Consensus 87 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~~~~~~~~~Y~~sK~---~~ 163 (372)
T 1db3_A 87 AMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKL---YA 163 (372)
T ss_dssp CCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHHH---HH
T ss_pred cccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCccCCCCCCChHHHHHH---HH
Confidence 21 0 2345666777 7999999998876321 111221111 222 33
Q ss_pred HHHHH----hcCCCEEEEeccccccCCCCc-----------------c--ceeeecCCcCCCcccHHHHHHHHHHHhhCC
Q 028525 120 ESMLM----ASGIPYTIIRTGVLQNTPGGK-----------------Q--GFQFEEGCAANGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 120 e~~l~----~~~~~~tivRp~~~~~~~~~~-----------------~--~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~ 176 (208)
|.+++ +.+++++++||..+++..... . ...++.+.....+++++|+|++++.+++++
T Consensus 164 e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~ 243 (372)
T 1db3_A 164 YWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQE 243 (372)
T ss_dssp HHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeeeeEHHHHHHHHHHHHhcC
Confidence 44443 468999999998876532110 0 111233344467899999999999999866
Q ss_pred CCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 177 PQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 177 ~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
. ++.||++++. .+..|+++.+.+.+|.+
T Consensus 244 ~--~~~~ni~~~~~~s~~e~~~~i~~~~g~~ 272 (372)
T 1db3_A 244 Q--PEDFVIATGVQYSVRQFVEMAAAQLGIK 272 (372)
T ss_dssp S--CCCEEECCCCCEEHHHHHHHHHHTTTEE
T ss_pred C--CceEEEcCCCceeHHHHHHHHHHHhCCC
Confidence 4 4789999876 59999999999988763
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.3e-21 Score=153.89 Aligned_cols=194 Identities=8% Similarity=-0.036 Sum_probs=135.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-----hhhhc------CC-ceEEEEcCCCCHHHHHHHhcC--CCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-----AMESF------GT-YVESMAGDASNKKFLKTALRG--VRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-----~~~~~------~~-~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~ 73 (208)
+++|+||++|+++|+++||+|++++|+.++ ..... .. +++++.+|++|++++.+++++ +|+||+++
T Consensus 35 GatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A 114 (381)
T 1n7h_A 35 GITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPDEVYNLA 114 (381)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred cCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCCEEEECC
Confidence 579999999999999999999999998754 21111 12 688999999999999999986 69999873
Q ss_pred CC-c---------------------hhhhhhhcCCC-----eEEEeceeeeccCCC-------Ccccccchh-HHHhHHH
Q 028525 74 EG-F---------------------ISNAGSLKGVQ-----HVILLSQLSVYRGSG-------GIQALMKGN-ARKLAEQ 118 (208)
Q Consensus 74 ~~-~---------------------~~~a~~~~gv~-----~~v~~Ss~~~~~~~~-------~~~~~~~~~-~~~~~~~ 118 (208)
+. . +.+++...+++ +||++||.++|+... +..+...+. .|. .
T Consensus 115 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~~~~E~~~~~~~~~Y~~sK~---~ 191 (381)
T 1n7h_A 115 AQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKC---A 191 (381)
T ss_dssp SCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTTSCCCCCSHHHHHHH---H
T ss_pred cccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCCCCCCCCCCCCCCchHHHHH---H
Confidence 21 0 23345555665 999999999886321 112221111 222 3
Q ss_pred HHHHHH----hcCCCEEEEeccccccCCCCcc-------------------ceeeecCCcCCCcccHHHHHHHHHHHhhC
Q 028525 119 DESMLM----ASGIPYTIIRTGVLQNTPGGKQ-------------------GFQFEEGCAANGSLSKEDAAFICVEALES 175 (208)
Q Consensus 119 ~e~~l~----~~~~~~tivRp~~~~~~~~~~~-------------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~ 175 (208)
+|.+++ ..+++++++|+..+++...... ...++.+.....+++++|+|++++.++++
T Consensus 192 ~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~ 271 (381)
T 1n7h_A 192 AHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQ 271 (381)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceeeeEEHHHHHHHHHHHHhC
Confidence 444443 3589999999987765321110 01122223345689999999999999987
Q ss_pred CCCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 176 IPQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 176 ~~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
+. ++.|+++++. .+..|+++.+.+..+.+
T Consensus 272 ~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~ 301 (381)
T 1n7h_A 272 EK--PDDYVVATEEGHTVEEFLDVSFGYLGLN 301 (381)
T ss_dssp SS--CCEEEECCSCEEEHHHHHHHHHHHTTCC
T ss_pred CC--CCeEEeeCCCCCcHHHHHHHHHHHcCCC
Confidence 65 4799999876 49999999999998753
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=156.05 Aligned_cols=172 Identities=13% Similarity=0.048 Sum_probs=129.8
Q ss_pred ccccCccHHHHHHHHHhCCC-cEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC----------
Q 028525 7 MKRKKMNFRMVILSLIVKRT-RIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG---------- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~---------- 75 (208)
-++||+||++|+++|+++|+ +|+.++|+ .|++++.++++++|+||++++.
T Consensus 6 tGatG~iG~~l~~~L~~~g~~~v~~~d~~-------------------~d~~~l~~~~~~~d~Vih~a~~~~~~~~~~~~ 66 (369)
T 3st7_A 6 TGAKGFVGKNLKADLTSTTDHHIFEVHRQ-------------------TKEEELESALLKADFIVHLAGVNRPEHDKEFS 66 (369)
T ss_dssp ETTTSHHHHHHHHHHHHHCCCEEEECCTT-------------------CCHHHHHHHHHHCSEEEECCCSBCTTCSTTCS
T ss_pred ECCCCHHHHHHHHHHHhCCCCEEEEECCC-------------------CCHHHHHHHhccCCEEEECCcCCCCCCHHHHH
Confidence 36799999999999999998 66666554 7899999999999999987221
Q ss_pred --------chhhhhhhcCCC-eEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHH----hcCCCEEEEeccccccCC
Q 028525 76 --------FISNAGSLKGVQ-HVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLM----ASGIPYTIIRTGVLQNTP 142 (208)
Q Consensus 76 --------~~~~a~~~~gv~-~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~----~~~~~~tivRp~~~~~~~ 142 (208)
.+.+++++.+++ +||++||.+++. ..+|.. .|. .+|++++ +.+++++++||+.+++..
T Consensus 67 ~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~----~~~Y~~--sK~---~~E~~~~~~~~~~g~~~~i~R~~~v~G~~ 137 (369)
T 3st7_A 67 LGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ----DNPYGE--SKL---QGEQLLREYAEEYGNTVYIYRWPNLFGKW 137 (369)
T ss_dssp SSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS----CSHHHH--HHH---HHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC----CCCchH--HHH---HHHHHHHHHHHHhCCCEEEEECCceeCCC
Confidence 145677888887 999999999886 334443 332 3455554 379999999999998753
Q ss_pred CCc----------------cceeeecCCcCCCcccHHHHHHHHHHHhhCCCCC-CcEEEEeeCC-cchhhHHHHHHHHhh
Q 028525 143 GGK----------------QGFQFEEGCAANGSLSKEDAAFICVEALESIPQT-GLIFEVVNGE-EKVSDWKKCFSRLME 204 (208)
Q Consensus 143 ~~~----------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~-~~~~~i~~~~-~~~~e~~~~~~~~~~ 204 (208)
... ..+.+..+.....+++++|+|++++.+++++... ++.|+++++. .+..|+++.+.+..+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g 217 (369)
T 3st7_A 138 CKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQ 217 (369)
T ss_dssp CCTTSSCHHHHHHHHHHTTCCCCCSCTTCEEEEEEHHHHHHHHHHHHHTCCCEETTEECCSCCEEEEHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHcCCCeEecCCCeEEEEEEHHHHHHHHHHHHhCCcccCCceEEeCCCCceeHHHHHHHHHHHhC
Confidence 211 1111222333356789999999999999988764 8999999765 499999999999988
Q ss_pred hc
Q 028525 205 KT 206 (208)
Q Consensus 205 ~~ 206 (208)
.+
T Consensus 218 ~~ 219 (369)
T 3st7_A 218 SR 219 (369)
T ss_dssp HH
T ss_pred CC
Confidence 65
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-21 Score=152.01 Aligned_cols=194 Identities=12% Similarity=0.042 Sum_probs=135.3
Q ss_pred cccCccHHHHHHHHHhCC-------CcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-CCCEEEEcCCCc---
Q 028525 8 KRKKMNFRMVILSLIVKR-------TRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-GVRSIICPSEGF--- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-------~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-~~d~vi~~~~~~--- 76 (208)
+++|+||++|+++|+++| ++|++++|+.++.......+++++.+|++|++++.++++ ++|+||++++..
T Consensus 21 Ga~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~A~~~~~~ 100 (342)
T 2hrz_A 21 GAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVEARPDVIFHLAAIVSGE 100 (342)
T ss_dssp TTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTSTTHHHHHHHTCCSEEEECCCCCHHH
T ss_pred CCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCHHHHHHHHhcCCCEEEECCccCccc
Confidence 469999999999999999 899999998754332223578999999999999999995 899999883311
Q ss_pred ------------------hhhhhhhcC-----CCeEEEeceeeeccCCC-----------CcccccchhHHHhHHHHHHH
Q 028525 77 ------------------ISNAGSLKG-----VQHVILLSQLSVYRGSG-----------GIQALMKGNARKLAEQDESM 122 (208)
Q Consensus 77 ------------------~~~a~~~~g-----v~~~v~~Ss~~~~~~~~-----------~~~~~~~~~~~~~~~~~e~~ 122 (208)
+.+++.+.+ +++||++||..+|+... +..+|.. .|. .+|.+
T Consensus 101 ~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~~~~~Y~~--sK~---~~e~~ 175 (342)
T 2hrz_A 101 AELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGT--QKA---ICELL 175 (342)
T ss_dssp HHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTTCCCCCSSHHHH--HHH---HHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCCCCCCCcchHHH--HHH---HHHHH
Confidence 223455555 89999999998886421 1222322 222 34554
Q ss_pred HH----hcCCCEEEEeccccccCCCCcc----c--------------eee-ecCCcCCCcccHHHHHHHHHHHhhCCCC-
Q 028525 123 LM----ASGIPYTIIRTGVLQNTPGGKQ----G--------------FQF-EEGCAANGSLSKEDAAFICVEALESIPQ- 178 (208)
Q Consensus 123 l~----~~~~~~tivRp~~~~~~~~~~~----~--------------~~~-~~~~~~~~~v~~~Dva~~~~~~l~~~~~- 178 (208)
++ ..+++++++|++.++..++... . ..+ ..+.....+++++|+|++++.+++.+..
T Consensus 176 ~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~~~~~~~~~~~~~ 255 (342)
T 2hrz_A 176 LSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPRSAVGFLIHGAMIDVEK 255 (342)
T ss_dssp HHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCEEEEECHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCccceeeEehHHHHHHHHHHHhccccc
Confidence 44 3478999999988875443210 0 001 0111113357899999999999987643
Q ss_pred --CCcEEEEeeCCcchhhHHHHHHHHhhhc
Q 028525 179 --TGLIFEVVNGEEKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 179 --~~~~~~i~~~~~~~~e~~~~~~~~~~~~ 206 (208)
.++.||+++...+..|+++.+.+.++.+
T Consensus 256 ~~~~~~~ni~g~~~s~~e~~~~i~~~~g~~ 285 (342)
T 2hrz_A 256 VGPRRNLSMPGLSATVGEQIEALRKVAGEK 285 (342)
T ss_dssp HCSCCEEECCCEEEEHHHHHHHHHHHHCHH
T ss_pred cCCccEEEcCCCCCCHHHHHHHHHHHcCcc
Confidence 5789999643459999999999988764
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=153.58 Aligned_cols=183 Identities=13% Similarity=0.019 Sum_probs=128.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh----hhhh----cCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC--C--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN----AMES----FGTYVESMAGDASNKKFLKTALRGVRSIICPSE--G-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~----~~~~----~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~--~-- 75 (208)
++||+||++|+++|+++||+|++++|+.+. .... ...+++++.+|++ ++|+||++++ .
T Consensus 14 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~----------~~d~vi~~a~~~~~~ 83 (321)
T 3vps_A 14 GGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS----------DVRLVYHLASHKSVP 83 (321)
T ss_dssp TTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT----------TEEEEEECCCCCCHH
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc----------cCCEEEECCccCChH
Confidence 579999999999999999999999998762 1111 1134566666665 7999998732 1
Q ss_pred -----------------chhhhhhhcCCCeEEEeceeeeccCCC--------Ccccccchh-HHHhHHHHHHHHHh----
Q 028525 76 -----------------FISNAGSLKGVQHVILLSQLSVYRGSG--------GIQALMKGN-ARKLAEQDESMLMA---- 125 (208)
Q Consensus 76 -----------------~~~~a~~~~gv~~~v~~Ss~~~~~~~~--------~~~~~~~~~-~~~~~~~~e~~l~~---- 125 (208)
.+.+++.+.++++|||+||.++|+... +..+...+. .|. .+|.+++.
T Consensus 84 ~~~~~~~~~~~n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~~~~~p~~~Y~~sK~---~~E~~~~~~~~~ 160 (321)
T 3vps_A 84 RSFKQPLDYLDNVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKV---GLEMVAGAHQRA 160 (321)
T ss_dssp HHTTSTTTTHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHH---HHHHHHHHHHHS
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCCCCCCCCChhHHHHH---HHHHHHHHHHHH
Confidence 034567778999999999999886321 112221111 222 34555543
Q ss_pred cCC-CEEEEeccccccCCCCc--------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC
Q 028525 126 SGI-PYTIIRTGVLQNTPGGK--------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE 189 (208)
Q Consensus 126 ~~~-~~tivRp~~~~~~~~~~--------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~ 189 (208)
.++ +++++||+.+++..... ..+. ++.+.....+++++|+|++++.+++++.. + .||++++.
T Consensus 161 ~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~-g-~~~i~~~~ 238 (321)
T 3vps_A 161 SVAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLP-S-VVNFGSGQ 238 (321)
T ss_dssp SSSCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGGSCCC-S-EEEESCSC
T ss_pred cCCCceEEEEeccccCcCCCCCChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHhcCCC-C-eEEecCCC
Confidence 689 99999999998754321 1111 22334446789999999999999988766 6 99999876
Q ss_pred -cchhhHHHHHHHHhhhc
Q 028525 190 -EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 190 -~~~~e~~~~~~~~~~~~ 206 (208)
.+..|+++.+. .+|.+
T Consensus 239 ~~s~~e~~~~i~-~~g~~ 255 (321)
T 3vps_A 239 SLSVNDVIRILQ-ATSPA 255 (321)
T ss_dssp CEEHHHHHHHHH-TTCTT
T ss_pred cccHHHHHHHHH-HhCCC
Confidence 49999999999 88765
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=149.10 Aligned_cols=188 Identities=12% Similarity=0.052 Sum_probs=130.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh----hhhhc-CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC-Cc-----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN----AMESF-GTYVESMAGDASNKKFLKTALRGVRSIICPSE-GF----- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~----~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~-~~----- 76 (208)
++||+||++|+++|+++||+|++++|+.+. ..... ..+++++.+|+.|. ++.++|+||++++ ..
T Consensus 34 GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~d~vih~A~~~~~~~~~ 108 (343)
T 2b69_A 34 GGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP-----LYIEVDQIYHLASPASPPNYM 108 (343)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSC-----CCCCCSEEEECCSCCSHHHHT
T ss_pred cCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhccCCceEEEeCccCCh-----hhcCCCEEEECccccCchhhh
Confidence 469999999999999999999999997542 11111 24689999999885 3678999998732 10
Q ss_pred ----------------hhhhhhhcCCCeEEEeceeeeccCCC-------------Ccccccchh-HHHhHHHHHHHH---
Q 028525 77 ----------------ISNAGSLKGVQHVILLSQLSVYRGSG-------------GIQALMKGN-ARKLAEQDESML--- 123 (208)
Q Consensus 77 ----------------~~~a~~~~gv~~~v~~Ss~~~~~~~~-------------~~~~~~~~~-~~~~~~~~e~~l--- 123 (208)
+.+++.+.++ +||++||.++|+... +..+...+. .|. .+|.++
T Consensus 109 ~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~---~~E~~~~~~ 184 (343)
T 2b69_A 109 YNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKR---VAETMCYAY 184 (343)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHH---HHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHhCC-cEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchHHHHH---HHHHHHHHH
Confidence 2345666776 899999998885321 111111111 222 344444
Q ss_pred -HhcCCCEEEEeccccccCCCC---c-------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEE
Q 028525 124 -MASGIPYTIIRTGVLQNTPGG---K-------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEV 185 (208)
Q Consensus 124 -~~~~~~~tivRp~~~~~~~~~---~-------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i 185 (208)
++.+++++++||+.+++.... . ..+. ++.+.....+++++|+|++++.+++.+. ++.||+
T Consensus 185 ~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~--~~~~~i 262 (343)
T 2b69_A 185 MKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNV--SSPVNL 262 (343)
T ss_dssp HHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSSC--CSCEEE
T ss_pred HHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHHhcCC--CCeEEe
Confidence 346999999999999864321 1 0111 2223334568899999999999987653 678999
Q ss_pred eeCC-cchhhHHHHHHHHhhhc
Q 028525 186 VNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 186 ~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
+++. .+..|+++.+.+..|.+
T Consensus 263 ~~~~~~s~~e~~~~i~~~~g~~ 284 (343)
T 2b69_A 263 GNPEEHTILEFAQLIKNLVGSG 284 (343)
T ss_dssp SCCCEEEHHHHHHHHHHHHTCC
T ss_pred cCCCCCcHHHHHHHHHHHhCCC
Confidence 9866 49999999999998865
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=149.42 Aligned_cols=195 Identities=17% Similarity=0.128 Sum_probs=133.4
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchh----hh---hhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCCC-c
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRN----AM---ESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSEG-F 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~----~~---~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~-~ 76 (208)
-+++|+||++++++|+++||+|++++|.... .. ...+.+++++.+|++|++++.++++ ++|+||++++. .
T Consensus 6 TGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih~A~~~~ 85 (338)
T 1udb_A 6 TGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKA 85 (338)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEECCSCCC
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEECCccCc
Confidence 3679999999999999999999999874321 11 1113468899999999999999987 48999987321 0
Q ss_pred ---------------------hhhhhhhcCCCeEEEeceeeeccCCC--------C----cccccchhHHHhHHHHHHHH
Q 028525 77 ---------------------ISNAGSLKGVQHVILLSQLSVYRGSG--------G----IQALMKGNARKLAEQDESML 123 (208)
Q Consensus 77 ---------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~--------~----~~~~~~~~~~~~~~~~e~~l 123 (208)
+.+++++.++++||++||.++|+... + ..+|.. .|. .+|.++
T Consensus 86 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~~Y~~--sK~---~~e~~~ 160 (338)
T 1udb_A 86 VGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGK--SKL---MVEQIL 160 (338)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHH--HHH---HHHHHH
T ss_pred cccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCcccCCCCCCChHHH--HHH---HHHHHH
Confidence 23456677899999999998875321 1 112222 222 344444
Q ss_pred H----hc-CCCEEEEeccccccCCC--------C---c--------------ccee-ee------cCCcCCCcccHHHHH
Q 028525 124 M----AS-GIPYTIIRTGVLQNTPG--------G---K--------------QGFQ-FE------EGCAANGSLSKEDAA 166 (208)
Q Consensus 124 ~----~~-~~~~tivRp~~~~~~~~--------~---~--------------~~~~-~~------~~~~~~~~v~~~Dva 166 (208)
+ +. +++++++||+.+++... . . ..+. ++ .+.+...+++++|+|
T Consensus 161 ~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva 240 (338)
T 1udb_A 161 TDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLA 240 (338)
T ss_dssp HHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHH
T ss_pred HHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEEHHHHH
Confidence 3 23 79999999987765310 0 0 0011 11 111224678999999
Q ss_pred HHHHHHhhCCC--CCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 167 FICVEALESIP--QTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 167 ~~~~~~l~~~~--~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
++++.+++.+. ..+++||++++. .+..|+++.+.+.++.+
T Consensus 241 ~a~~~~l~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~ 283 (338)
T 1udb_A 241 DGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKP 283 (338)
T ss_dssp HHHHHHHHHHTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhhhhccCCCcEEEecCCCceeHHHHHHHHHHHhCCC
Confidence 99999987642 224789998766 49999999999998864
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-21 Score=151.89 Aligned_cols=190 Identities=10% Similarity=0.070 Sum_probs=128.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh---hhhh--cC---CceEEEEcCCCCHHHHHHHhcCCCEEEEcCC--C--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN---AMES--FG---TYVESMAGDASNKKFLKTALRGVRSIICPSE--G-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~---~~~~--~~---~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~--~-- 75 (208)
+++|+||++|+++|+++||+|++++|+.+. .... .. .+++++.+|++|++++.++++++|+|||+++ .
T Consensus 12 GatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~ 91 (337)
T 2c29_D 12 GASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHVATPMDFE 91 (337)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEEECCCCCCSS
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEEEeccccCCC
Confidence 569999999999999999999999998763 1111 11 2588999999999999999999999998721 1
Q ss_pred -c----------------hhhhhhhcC-CCeEEEeceeee-ccCCC---------------------CcccccchhHHHh
Q 028525 76 -F----------------ISNAGSLKG-VQHVILLSQLSV-YRGSG---------------------GIQALMKGNARKL 115 (208)
Q Consensus 76 -~----------------~~~a~~~~g-v~~~v~~Ss~~~-~~~~~---------------------~~~~~~~~~~~~~ 115 (208)
. +.+++.+.+ ++||||+||.++ +.... +.++|.. .|.
T Consensus 92 ~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~--sK~- 168 (337)
T 2c29_D 92 SKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFV--SKT- 168 (337)
T ss_dssp CSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTTHHHHH--HHH-
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCCccchHHH--HHH-
Confidence 0 123455566 899999999874 32110 0011221 222
Q ss_pred HHHHHHHH----HhcCCCEEEEeccccccCCCCcc---cee------eecCC-----cCCCcccHHHHHHHHHHHhhCCC
Q 028525 116 AEQDESML----MASGIPYTIIRTGVLQNTPGGKQ---GFQ------FEEGC-----AANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 116 ~~~~e~~l----~~~~~~~tivRp~~~~~~~~~~~---~~~------~~~~~-----~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
.+|.++ +..+++++++||+.+++...... .+. .+.+. ....+++++|+|++++.+++++.
T Consensus 169 --~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 246 (337)
T 2c29_D 169 --LAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLFENPK 246 (337)
T ss_dssp --HHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHHHTHHHHTCGGGHHHHTEEEEEEHHHHHHHHHHHHHCTT
T ss_pred --HHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCCccccccCCCCEEEHHHHHHHHHHHhcCcc
Confidence 234433 34699999999999986432211 000 00000 01237899999999999998754
Q ss_pred CCCcEEEEeeCCcchhhHHHHHHHHh
Q 028525 178 QTGLIFEVVNGEEKVSDWKKCFSRLM 203 (208)
Q Consensus 178 ~~~~~~~i~~~~~~~~e~~~~~~~~~ 203 (208)
. +..|+++++..+++|+++.+.+..
T Consensus 247 ~-~~~~~~~~~~~s~~e~~~~i~~~~ 271 (337)
T 2c29_D 247 A-EGRYICSSHDCIILDLAKMLREKY 271 (337)
T ss_dssp C-CEEEEECCEEEEHHHHHHHHHHHC
T ss_pred c-CceEEEeCCCCCHHHHHHHHHHHC
Confidence 4 346776655568999999998865
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=149.15 Aligned_cols=194 Identities=8% Similarity=-0.073 Sum_probs=135.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh----hhc--CCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCCC-c--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM----ESF--GTYVESMAGDASNKKFLKTALRG--VRSIICPSEG-F-- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~----~~~--~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~~-~-- 76 (208)
++||+||++|+++|+++||+|++++|+.++.. ... ..+++++.+|++|++++.+++++ +|+|||+++. .
T Consensus 10 GatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~ 89 (345)
T 2z1m_A 10 GIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVG 89 (345)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHH
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEECCCCcchh
Confidence 57999999999999999999999999876421 111 23689999999999999999985 5999988321 0
Q ss_pred -------------------hhhhhhhcCC-CeEEEeceeeeccCC--------CCcccccchh-HHHhHHHHHHHHH---
Q 028525 77 -------------------ISNAGSLKGV-QHVILLSQLSVYRGS--------GGIQALMKGN-ARKLAEQDESMLM--- 124 (208)
Q Consensus 77 -------------------~~~a~~~~gv-~~~v~~Ss~~~~~~~--------~~~~~~~~~~-~~~~~~~~e~~l~--- 124 (208)
+.+++.+.++ ++||++||.++|+.. .+..+...|. .|. .+|.+++
T Consensus 90 ~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~~~~~Y~~sK~---~~e~~~~~~~ 166 (345)
T 2z1m_A 90 VSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKL---FGHWITVNYR 166 (345)
T ss_dssp HHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHH---HHHHHHHHHH
T ss_pred hhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCccCCCCCCChhHHHHH---HHHHHHHHHH
Confidence 2344566787 899999999887531 1112222111 222 3344443
Q ss_pred -hcCCCEEEEeccccccCCCCcc-------------------ceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEE
Q 028525 125 -ASGIPYTIIRTGVLQNTPGGKQ-------------------GFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFE 184 (208)
Q Consensus 125 -~~~~~~tivRp~~~~~~~~~~~-------------------~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~ 184 (208)
+.+++++++|+..+++...... ...++.+.....+++.+|+|++++.+++++. ++.||
T Consensus 167 ~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~~~~~~~~~--~~~~~ 244 (345)
T 2z1m_A 167 EAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPE--PDDYV 244 (345)
T ss_dssp HHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHHHHHHTSSS--CCCEE
T ss_pred HHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHHHHHHhCCC--CceEE
Confidence 3589999999877665321110 0112222333568899999999999998765 37899
Q ss_pred EeeCC-cchhhHHHHHHHHhhhc
Q 028525 185 VVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 185 i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
++++. .+..|+++.+.+.+|.+
T Consensus 245 i~~~~~~s~~e~~~~i~~~~g~~ 267 (345)
T 2z1m_A 245 IATGETHTVREFVEKAAKIAGFD 267 (345)
T ss_dssp ECCSCCEEHHHHHHHHHHHTTCC
T ss_pred EeCCCCccHHHHHHHHHHHhCCC
Confidence 99876 49999999999998864
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.6e-21 Score=151.97 Aligned_cols=196 Identities=12% Similarity=0.068 Sum_probs=138.3
Q ss_pred ccccCccHHHHHHHHHhCC-----CcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC---CCEEEEcCCC---
Q 028525 7 MKRKKMNFRMVILSLIVKR-----TRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG---VRSIICPSEG--- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g-----~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~---~d~vi~~~~~--- 75 (208)
-++||+||++|+++|+++| |+|++++|++++.. ....+++++.+|++|++++.+++++ +|+|||+++.
T Consensus 7 tGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~a~~~~~ 85 (364)
T 2v6g_A 7 VGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-HEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVTWANRS 85 (364)
T ss_dssp ETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-CCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEECCCCCCS
T ss_pred ECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-cccCceEEEEeecCCHHHHHHHHhcCCCCCEEEECCCCCcc
Confidence 3679999999999999999 99999999876543 2234789999999999999999998 9999988321
Q ss_pred c--------------hhhhhhhc--CCCeEE-------EeceeeeccCCC----Cc---ccccc-hhHHHhHHHHHHHHH
Q 028525 76 F--------------ISNAGSLK--GVQHVI-------LLSQLSVYRGSG----GI---QALMK-GNARKLAEQDESMLM 124 (208)
Q Consensus 76 ~--------------~~~a~~~~--gv~~~v-------~~Ss~~~~~~~~----~~---~~~~~-~~~~~~~~~~e~~l~ 124 (208)
. +.+++.+. ++++|| |+||.++|+... +. .+..+ ...+. .+|++++
T Consensus 86 ~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~~~~~~~~y~---~~E~~~~ 162 (364)
T 2v6g_A 86 TEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYY---DLEDIML 162 (364)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSCCCSSCCHHH---HHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCccccCCccchhhH---HHHHHHH
Confidence 0 23456666 799998 789988875321 10 00000 00111 2455554
Q ss_pred h----cC-CCEEEEeccccccCCCCcc-c-------ee-e----ecCC--c--------CCCcccHHHHHHHHHHHhhCC
Q 028525 125 A----SG-IPYTIIRTGVLQNTPGGKQ-G-------FQ-F----EEGC--A--------ANGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 125 ~----~~-~~~tivRp~~~~~~~~~~~-~-------~~-~----~~~~--~--------~~~~v~~~Dva~~~~~~l~~~ 176 (208)
+ .+ ++++++||+.+++...... . +. + +... . ....++++|+|++++.+++++
T Consensus 163 ~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~v~Dva~a~~~~~~~~ 242 (364)
T 2v6g_A 163 EEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDP 242 (364)
T ss_dssp HHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSCHHHHHSCBCCEEHHHHHHHHHHHHHCG
T ss_pred HHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCCcccccccCCCCcHHHHHHHHHHHHhCC
Confidence 3 55 9999999999987432210 0 00 1 1110 1 123456699999999999887
Q ss_pred CCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 177 PQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 177 ~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
...++.||++++. .+..|+++.+.+.+|.+
T Consensus 243 ~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~ 273 (364)
T 2v6g_A 243 YAKNEAFNVSNGDVFKWKHFWKVLAEQFGVE 273 (364)
T ss_dssp GGTTEEEEECCSCCBCHHHHHHHHHHHHTCC
T ss_pred CCCCceEEecCCCcCCHHHHHHHHHHHhCCC
Confidence 6678899999876 59999999999998865
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=163.81 Aligned_cols=187 Identities=16% Similarity=0.168 Sum_probs=133.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh------------------hhhcCCceEEEEcCCCCHHHHHHHhcCCCEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA------------------MESFGTYVESMAGDASNKKFLKTALRGVRSI 69 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~------------------~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~v 69 (208)
++||+||++|+++|+++|++|++++|+.++. ......+++++.+|+.|++.+. ++.++|+|
T Consensus 157 GatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-~~~~~D~V 235 (508)
T 4f6l_B 157 GATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-LPENMDTI 235 (508)
T ss_dssp CTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-CSSCCSEE
T ss_pred CCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-CccCCCEE
Confidence 5699999999999999999999999987731 1122458999999999988877 77889999
Q ss_pred EEcCCCc-------------------hhhhhhhcCCCeEEEeceeee--ccC----------CC------CcccccchhH
Q 028525 70 ICPSEGF-------------------ISNAGSLKGVQHVILLSQLSV--YRG----------SG------GIQALMKGNA 112 (208)
Q Consensus 70 i~~~~~~-------------------~~~a~~~~gv~~~v~~Ss~~~--~~~----------~~------~~~~~~~~~~ 112 (208)
|++++.. +.+++.. ++++|||+||.++ +.. .. +...|.. .
T Consensus 236 ih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS~~vG~~~~~~~~~~~~~E~~~~~~~~~~~~Y~~--s 312 (508)
T 4f6l_B 236 IHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTR--S 312 (508)
T ss_dssp EECCCC--------CCHHHHHHHHHHHHHHHHT-TTCEEEEEEESCTTSEECTTCSCCEECTTCSCSSBCCCSHHHH--H
T ss_pred EECCceecCCCCHHHHhhhHHHHHHHHHHHHHh-CCCcEEEeCChhhccCCccCCcCcccccccccccccCCCcHHH--H
Confidence 9883210 2344555 7789999999887 110 00 1122221 2
Q ss_pred HHhHHHHHHHHHh---cCCCEEEEeccccccCCCCcc---c-----e-----------eeec--CCcCCCcccHHHHHHH
Q 028525 113 RKLAEQDESMLMA---SGIPYTIIRTGVLQNTPGGKQ---G-----F-----------QFEE--GCAANGSLSKEDAAFI 168 (208)
Q Consensus 113 ~~~~~~~e~~l~~---~~~~~tivRp~~~~~~~~~~~---~-----~-----------~~~~--~~~~~~~v~~~Dva~~ 168 (208)
|. .+|++++. .|++++++||+.+++....+. . + .+.. +.....+++++|+|++
T Consensus 313 K~---~~E~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~v~v~DvA~a 389 (508)
T 4f6l_B 313 KF---YSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQ 389 (508)
T ss_dssp HH---HHHHHHHHHHHTTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEETTGGGSEEECEEHHHHHHH
T ss_pred HH---HHHHHHHHHHHcCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCCCccCceEEEEcHHHHHHH
Confidence 22 35666654 799999999999987533211 0 0 0111 2333568899999999
Q ss_pred HHHHhhCCCCCCcEEEEeeCC-cchhhHHHHHHHH
Q 028525 169 CVEALESIPQTGLIFEVVNGE-EKVSDWKKCFSRL 202 (208)
Q Consensus 169 ~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~~~ 202 (208)
++.++.++. .+++||++++. .+..|+++.+.+.
T Consensus 390 i~~~~~~~~-~~~~~nl~~~~~~s~~el~~~i~~~ 423 (508)
T 4f6l_B 390 IVALAQVNT-PQIIYHVLSPNKMPVKSLLECVKRK 423 (508)
T ss_dssp HHHHTTBCC-SCSEEEESCSCEEEHHHHHHHHHSS
T ss_pred HHHHHhCCC-CCCEEEeCCCCCCCHHHHHHHHHHc
Confidence 999998877 78999999877 4899999888753
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-20 Score=153.87 Aligned_cols=190 Identities=13% Similarity=0.105 Sum_probs=136.2
Q ss_pred cccCccHHHHHHHHHhC---CCcEEEEEcCchhhh------h---------------hcCCceEEEEcCCC------CHH
Q 028525 8 KRKKMNFRMVILSLIVK---RTRIKALVKDKRNAM------E---------------SFGTYVESMAGDAS------NKK 57 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~---g~~V~~~~R~~~~~~------~---------------~~~~~v~~v~~Dl~------d~~ 57 (208)
++||+||++|+++|+++ |++|++++|+.+... + ....+++++.+|++ |.+
T Consensus 80 GatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~~~~~gld~~ 159 (478)
T 4dqv_A 80 GATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQP 159 (478)
T ss_dssp CTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTTSGGGGCCHH
T ss_pred CCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECCCcccCCCHH
Confidence 46999999999999999 899999999875421 0 11257999999998 778
Q ss_pred HHHHHhcCCCEEEEcCCC------------------chhhhhhhcCCCeEEEeceeeeccCCCCc---------------
Q 028525 58 FLKTALRGVRSIICPSEG------------------FISNAGSLKGVQHVILLSQLSVYRGSGGI--------------- 104 (208)
Q Consensus 58 ~l~~~~~~~d~vi~~~~~------------------~~~~a~~~~gv~~~v~~Ss~~~~~~~~~~--------------- 104 (208)
++.++++++|+||++++. .+.+++...++++|||+||.++|....+.
T Consensus 160 ~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~~~~~~E~~~~~p~~~~~ 239 (478)
T 4dqv_A 160 MWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTR 239 (478)
T ss_dssp HHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSCTTTCCSSSCHHHHCCEE
T ss_pred HHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccCCCCcCCcccccccCccc
Confidence 899999999999988321 03456777889999999999887632110
Q ss_pred -------ccccchhHHHhHHHHHHHHHh----cCCCEEEEeccccccCCC-Cc--c--ce------------eeec----
Q 028525 105 -------QALMKGNARKLAEQDESMLMA----SGIPYTIIRTGVLQNTPG-GK--Q--GF------------QFEE---- 152 (208)
Q Consensus 105 -------~~~~~~~~~~~~~~~e~~l~~----~~~~~tivRp~~~~~~~~-~~--~--~~------------~~~~---- 152 (208)
..|.. .|. .+|.+++. .+++++++||+.+++... .+ . .+ ....
T Consensus 240 ~~~~~~~~~Y~~--sK~---~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~~~~~g~~P~~~~~ 314 (478)
T 4dqv_A 240 TVDGGWAGGYGT--SKW---AGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMATGIAPRSFYE 314 (478)
T ss_dssp ECCTTSEECHHH--HHH---HHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHHHHHHCEEESCSBC
T ss_pred ccccccccchHH--HHH---HHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHHHHHHcCcccccccc
Confidence 01222 222 34555553 599999999999987422 11 0 00 0000
Q ss_pred -------CCcCCCcccHHHHHHHHHHHhhC----CCCCCcEEEEeeCC---cchhhHHHHHHHH
Q 028525 153 -------GCAANGSLSKEDAAFICVEALES----IPQTGLIFEVVNGE---EKVSDWKKCFSRL 202 (208)
Q Consensus 153 -------~~~~~~~v~~~Dva~~~~~~l~~----~~~~~~~~~i~~~~---~~~~e~~~~~~~~ 202 (208)
+.....+++++|+|++++.++.+ +...+++||++++. .+..|+++++.++
T Consensus 315 ~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~~l~~~ 378 (478)
T 4dqv_A 315 PDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIEA 378 (478)
T ss_dssp CCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHHHHHHT
T ss_pred cccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHHHHHHc
Confidence 02235779999999999999876 55668999999865 4789999999885
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=161.07 Aligned_cols=193 Identities=11% Similarity=0.058 Sum_probs=139.0
Q ss_pred cccCccHHHHHHHHHhC-CCcEEEEEcCchhhhhhc-CCceEEEEcCCCCHHH-HHHHhcCCCEEEEcCC--Cc------
Q 028525 8 KRKKMNFRMVILSLIVK-RTRIKALVKDKRNAMESF-GTYVESMAGDASNKKF-LKTALRGVRSIICPSE--GF------ 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~-g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~~~-l~~~~~~~d~vi~~~~--~~------ 76 (208)
++||+||++|+++|+++ ||+|++++|+.++..... ..+++++.+|++|.++ +.++++++|+|||+++ ..
T Consensus 322 GatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~~~~~v~~v~~Dl~d~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~ 401 (660)
T 1z7e_A 322 GVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRN 401 (660)
T ss_dssp TTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGTTCTTEEEEECCTTTCHHHHHHHHHHCSEEEECCCCCCTHHHHHS
T ss_pred cCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhccCCceEEEECCCCCcHHHHHHhhcCCCEEEECceecCccccccC
Confidence 46999999999999998 899999999877644332 3479999999999765 7788899999998722 10
Q ss_pred --------------hhhhhhhcCCCeEEEeceeeeccCCCCc------------------ccccchhHHHhHHHHHHHHH
Q 028525 77 --------------ISNAGSLKGVQHVILLSQLSVYRGSGGI------------------QALMKGNARKLAEQDESMLM 124 (208)
Q Consensus 77 --------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~------------------~~~~~~~~~~~~~~~e~~l~ 124 (208)
+.+++.+.+ +|||++||.++|+..... +.|.. .|. .+|.+++
T Consensus 402 ~~~~~~~Nv~gt~~ll~aa~~~~-~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y~~--sK~---~~E~~~~ 475 (660)
T 1z7e_A 402 PLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSV--SKQ---LLDRVIW 475 (660)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTHHHHH--HHH---HHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhC-CEEEEEecHHHcCCCCCcccCCCccccccCcccCCCCCcHH--HHH---HHHHHHH
Confidence 234566677 899999999888532110 01211 222 3455553
Q ss_pred ----hcCCCEEEEeccccccCCCC---------c-------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 125 ----ASGIPYTIIRTGVLQNTPGG---------K-------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 125 ----~~~~~~tivRp~~~~~~~~~---------~-------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
+.+++++++||+.+++.... . ..+. ++.+.....+++++|+|++++.+++++.
T Consensus 476 ~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~ 555 (660)
T 1z7e_A 476 AYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAG 555 (660)
T ss_dssp HHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHHHHHHHHCGG
T ss_pred HHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHHHHHHHhCcc
Confidence 46999999999999864321 0 0011 1222334568999999999999998765
Q ss_pred --CCCcEEEEeeCC--cchhhHHHHHHHHhhhc
Q 028525 178 --QTGLIFEVVNGE--EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 178 --~~~~~~~i~~~~--~~~~e~~~~~~~~~~~~ 206 (208)
..+++|+++++. .++.|+++.+.+..+.+
T Consensus 556 ~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~ 588 (660)
T 1z7e_A 556 NRCDGEIINIGNPENEASIEELGEMLLASFEKH 588 (660)
T ss_dssp GTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHC
T ss_pred ccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCC
Confidence 467899999874 59999999999988764
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=143.50 Aligned_cols=171 Identities=10% Similarity=0.021 Sum_probs=125.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC----Cc-------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE----GF------- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~----~~------- 76 (208)
+.+|+||++++++|+++|++|++++|++.+.. ..+++++.+|++|++++.++++++|+||++++ ..
T Consensus 10 Gasg~IG~~la~~L~~~G~~V~~~~r~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~~~~~~~~~~~~~ 86 (267)
T 3rft_A 10 GAAGQLGRVMRERLAPMAEILRLADLSPLDPA---GPNEECVQCDLADANAVNAMVAGCDGIVHLGGISVEKPFEQILQG 86 (267)
T ss_dssp STTSHHHHHHHHHTGGGEEEEEEEESSCCCCC---CTTEEEEECCTTCHHHHHHHHTTCSEEEECCSCCSCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCEEEEEecCCcccc---CCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCCcCcCCHHHHHHH
Confidence 46999999999999999999999999976643 45799999999999999999999999998732 11
Q ss_pred -------hhhhhhhcCCCeEEEeceeeeccCC---------CCcccccchh-HHHhHHH-HHHHHHhcCCCEEEEecccc
Q 028525 77 -------ISNAGSLKGVQHVILLSQLSVYRGS---------GGIQALMKGN-ARKLAEQ-DESMLMASGIPYTIIRTGVL 138 (208)
Q Consensus 77 -------~~~a~~~~gv~~~v~~Ss~~~~~~~---------~~~~~~~~~~-~~~~~~~-~e~~l~~~~~~~tivRp~~~ 138 (208)
+.+++.+.+++|||++||.++++.. .+..+...|. .|...+. ++.+.++.++++++|||+.+
T Consensus 87 N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~a~~~g~~~~~vr~~~v 166 (267)
T 3rft_A 87 NIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKFGQETALVRIGSC 166 (267)
T ss_dssp HTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECBC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCeEEEEEeecc
Confidence 3456777889999999999887421 1112222221 2332221 22233357999999999999
Q ss_pred ccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC
Q 028525 139 QNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE 189 (208)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~ 189 (208)
++.+... .....+++.+|+++++..+++.+...+.++++.++.
T Consensus 167 ~~~~~~~--------~~~~~~~~~~d~a~~~~~~~~~~~~~~~~~~~~s~~ 209 (267)
T 3rft_A 167 TPEPNNY--------RMLSTWFSHDDFVSLIEAVFRAPVLGCPVVWGASAN 209 (267)
T ss_dssp SSSCCST--------THHHHBCCHHHHHHHHHHHHHCSCCCSCEEEECCCC
T ss_pred cCCCCCC--------CceeeEEcHHHHHHHHHHHHhCCCCCceEEEEeCCC
Confidence 8654322 222457899999999999999887766777777654
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=161.75 Aligned_cols=196 Identities=12% Similarity=0.052 Sum_probs=136.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh-------hhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCCC-c-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA-------MESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSEG-F- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-------~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~-~- 76 (208)
+++|+||++|+++|+++|++|++++|+.... ......+++++.+|++|++++.++++ ++|+||++++. .
T Consensus 18 GatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~Vih~A~~~~~ 97 (699)
T 1z45_A 18 GGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAV 97 (699)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEECCSCCCH
T ss_pred CCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCEEEECCcccCc
Confidence 4699999999999999999999999975431 11124578999999999999999998 89999987321 0
Q ss_pred --------------------hhhhhhhcCCCeEEEeceeeeccCCC------------Ccccccchh-HHHhHHHHHHHH
Q 028525 77 --------------------ISNAGSLKGVQHVILLSQLSVYRGSG------------GIQALMKGN-ARKLAEQDESML 123 (208)
Q Consensus 77 --------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~------------~~~~~~~~~-~~~~~~~~e~~l 123 (208)
+.+++++.++++||++||.++|+... +..+...+. .|. .+|.++
T Consensus 98 ~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~~~~~p~~~Y~~sK~---~~E~~~ 174 (699)
T 1z45_A 98 GESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKY---AIENIL 174 (699)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHHHHH---HHHHHH
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCccccCCCCCCChHHHHHH---HHHHHH
Confidence 23456677899999999998875311 111111111 222 345555
Q ss_pred Hh------cCCCEEEEeccccccCCCC-----------cc--------------cee-ee------cCCcCCCcccHHHH
Q 028525 124 MA------SGIPYTIIRTGVLQNTPGG-----------KQ--------------GFQ-FE------EGCAANGSLSKEDA 165 (208)
Q Consensus 124 ~~------~~~~~tivRp~~~~~~~~~-----------~~--------------~~~-~~------~~~~~~~~v~~~Dv 165 (208)
+. .+++++++||+.+++.... .. .+. ++ .+.....+++++|+
T Consensus 175 ~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dv 254 (699)
T 1z45_A 175 NDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDL 254 (699)
T ss_dssp HHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEECEEEHHHH
T ss_pred HHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccCCCCCeeEeeEEHHHH
Confidence 43 6899999999988763110 00 000 11 11223467899999
Q ss_pred HHHHHHHhhCC------CCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 166 AFICVEALESI------PQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 166 a~~~~~~l~~~------~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
|++++.+++.+ ...+++||++++. .++.|+++.+.+.++.+
T Consensus 255 a~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~ 302 (699)
T 1z45_A 255 AKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGID 302 (699)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCC
Confidence 99999988642 2235789999876 49999999999998864
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=149.68 Aligned_cols=194 Identities=13% Similarity=0.091 Sum_probs=129.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh------hh-cCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC-C-C---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM------ES-FGTYVESMAGDASNKKFLKTALRGVRSIICPS-E-G--- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~------~~-~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~-~-~--- 75 (208)
+++|+||++|+++|+++||+|++++|+.++.. .. ...+++++.+|++|++++.++++++|+|||++ . .
T Consensus 16 GatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A~~~~~~~ 95 (338)
T 2rh8_A 16 GGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVATPVHFAS 95 (338)
T ss_dssp CTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEESSCCCC--
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeCCccCCCC
Confidence 56999999999999999999999999865321 11 12368899999999999999999999999762 1 1
Q ss_pred ------c----------hhhhhhhcC-CCeEEEeceeee-cc-----C------CC--------Cc----ccccchhHHH
Q 028525 76 ------F----------ISNAGSLKG-VQHVILLSQLSV-YR-----G------SG--------GI----QALMKGNARK 114 (208)
Q Consensus 76 ------~----------~~~a~~~~g-v~~~v~~Ss~~~-~~-----~------~~--------~~----~~~~~~~~~~ 114 (208)
. +.+++.+.+ ++||||+||.++ +. . .. +. ++|..+ |.
T Consensus 96 ~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~s--K~ 173 (338)
T 2rh8_A 96 EDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPAS--KT 173 (338)
T ss_dssp -------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------CCCCCCTTS--CC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCCccchHHHH--HH
Confidence 0 124455665 999999999763 21 0 00 00 124432 22
Q ss_pred hHHH-HHHHHHhcCCCEEEEeccccccCCCCcc-c--ee-e---ecCC--------------cCCCcccHHHHHHHHHHH
Q 028525 115 LAEQ-DESMLMASGIPYTIIRTGVLQNTPGGKQ-G--FQ-F---EEGC--------------AANGSLSKEDAAFICVEA 172 (208)
Q Consensus 115 ~~~~-~e~~l~~~~~~~tivRp~~~~~~~~~~~-~--~~-~---~~~~--------------~~~~~v~~~Dva~~~~~~ 172 (208)
..+. +..+.+..+++++++||+.+++...... . +. + ..+. ....+++++|+|++++.+
T Consensus 174 ~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 253 (338)
T 2rh8_A 174 LAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCRAHIFV 253 (338)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCccccccccccccccCcccEEEHHHHHHHHHHH
Confidence 2221 2223334699999999999986532111 0 00 0 0000 011589999999999999
Q ss_pred hhCCCCCCcEEEEeeCCcchhhHHHHHHHHhh
Q 028525 173 LESIPQTGLIFEVVNGEEKVSDWKKCFSRLME 204 (208)
Q Consensus 173 l~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~ 204 (208)
++++.. +..|+++++..++.|+++.+.+..+
T Consensus 254 ~~~~~~-~~~~~~~~~~~s~~e~~~~l~~~~~ 284 (338)
T 2rh8_A 254 AEKESA-SGRYICCAANTSVPELAKFLSKRYP 284 (338)
T ss_dssp HHCTTC-CEEEEECSEEECHHHHHHHHHHHCT
T ss_pred HcCCCc-CCcEEEecCCCCHHHHHHHHHHhCC
Confidence 986544 4568877555689999999887654
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=158.44 Aligned_cols=188 Identities=16% Similarity=0.125 Sum_probs=125.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc-----------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF----------- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~----------- 76 (208)
++||+||++|+++|+++||+|++++|+.++.. .+.+|+.|. +.+++.++|+||++++..
T Consensus 154 GatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~--------~v~~d~~~~--~~~~l~~~D~Vih~A~~~~~~~~~~~~~~ 223 (516)
T 3oh8_A 154 GSRGLVGRALTAQLQTGGHEVIQLVRKEPKPG--------KRFWDPLNP--ASDLLDGADVLVHLAGEPIFGRFNDSHKE 223 (516)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESSSCCTT--------CEECCTTSC--CTTTTTTCSEEEECCCC-----CCGGGHH
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCCCCcc--------ceeecccch--hHHhcCCCCEEEECCCCccccccchhHHH
Confidence 57999999999999999999999999876532 256777653 356788999999872210
Q ss_pred ------------hhhh-hhhcCCCeEEEeceeeeccCCCC------cc--cccch-hHHHhHHHHHHHHHhcCCCEEEEe
Q 028525 77 ------------ISNA-GSLKGVQHVILLSQLSVYRGSGG------IQ--ALMKG-NARKLAEQDESMLMASGIPYTIIR 134 (208)
Q Consensus 77 ------------~~~a-~~~~gv~~~v~~Ss~~~~~~~~~------~~--~~~~~-~~~~~~~~~e~~l~~~~~~~tivR 134 (208)
+.++ ++..++++|||+||.++|+.... .. +...+ ..+...+....+....+++++++|
T Consensus 224 ~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~~~~~~~~y~~~~~~~E~~~~~~~~~gi~~~ilR 303 (516)
T 3oh8_A 224 AIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEESESGDDFLAEVCRDWEHATAPASDAGKRVAFIR 303 (516)
T ss_dssp HHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTTSCCCSSHHHHHHHHHHHTTHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCCCCCCcChHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 1234 45678999999999998861110 01 11111 011111122233456799999999
Q ss_pred ccccccCCCC-----------ccceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCc-chhhHHHHHHHH
Q 028525 135 TGVLQNTPGG-----------KQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEE-KVSDWKKCFSRL 202 (208)
Q Consensus 135 p~~~~~~~~~-----------~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~-~~~e~~~~~~~~ 202 (208)
|+.+++.... +....++.+.+...+++++|+|++++.+++++.. +..||++++.. +..|+++.+.+.
T Consensus 304 p~~v~Gp~~~~~~~~~~~~~~g~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~-~g~~ni~~~~~~s~~el~~~i~~~ 382 (516)
T 3oh8_A 304 TGVALSGRGGMLPLLKTLFSTGLGGKFGDGTSWFSWIAIDDLTDIYYRAIVDAQI-SGPINAVAPNPVSNADMTKILATS 382 (516)
T ss_dssp ECEEEBTTBSHHHHHHHTTC---CCCCTTSCCEECEEEHHHHHHHHHHHHHCTTC-CEEEEESCSCCEEHHHHHHHTTC-
T ss_pred eeEEECCCCChHHHHHHHHHhCCCcccCCCCceEceEeHHHHHHHHHHHHhCccc-CCcEEEECCCCCCHHHHHHHHHHH
Confidence 9999874321 0011122333446789999999999999987764 45899998664 999999999888
Q ss_pred hhhc
Q 028525 203 MEKT 206 (208)
Q Consensus 203 ~~~~ 206 (208)
+|++
T Consensus 383 ~g~~ 386 (516)
T 3oh8_A 383 MHRP 386 (516)
T ss_dssp ----
T ss_pred hCCC
Confidence 7764
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=146.78 Aligned_cols=194 Identities=14% Similarity=0.086 Sum_probs=125.8
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEc-Cchh---hh--hhcC---CceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC--
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVK-DKRN---AM--ESFG---TYVESMAGDASNKKFLKTALRGVRSIICPSEG-- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R-~~~~---~~--~~~~---~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~-- 75 (208)
-++||+||++|+++|+++||+|++++| +++. .. .... .+++++.+|++|++++.++++++|+|||+++.
T Consensus 7 TGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~ 86 (322)
T 2p4h_X 7 TGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFHTASPID 86 (322)
T ss_dssp ESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEECCCCC-
T ss_pred ECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEEcCCccc
Confidence 467999999999999999999999998 6532 11 1111 25788999999999999999999999987311
Q ss_pred -------c------------hhhhhhhc-CCCeEEEeceeeecc-CCCC---c--------------c----cccchhHH
Q 028525 76 -------F------------ISNAGSLK-GVQHVILLSQLSVYR-GSGG---I--------------Q----ALMKGNAR 113 (208)
Q Consensus 76 -------~------------~~~a~~~~-gv~~~v~~Ss~~~~~-~~~~---~--------------~----~~~~~~~~ 113 (208)
. +.+++.+. +++|||++||.+++. .... . . +|.. .|
T Consensus 87 ~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~~~Y~~--sK 164 (322)
T 2p4h_X 87 FAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAV--SK 164 (322)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTTHHHHH--HH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCcccccHHH--HH
Confidence 0 12345555 789999999987432 1100 0 0 1222 23
Q ss_pred HhHHH-HHHHHHhcCCCEEEEeccccccCCCCcc---ce------eeecC----CcCCCcccHHHHHHHHHHHhhCCCCC
Q 028525 114 KLAEQ-DESMLMASGIPYTIIRTGVLQNTPGGKQ---GF------QFEEG----CAANGSLSKEDAAFICVEALESIPQT 179 (208)
Q Consensus 114 ~~~~~-~e~~l~~~~~~~tivRp~~~~~~~~~~~---~~------~~~~~----~~~~~~v~~~Dva~~~~~~l~~~~~~ 179 (208)
...+. +.++.+..+++++++||+.+++...... .. ..+.. .....+++++|+|++++.+++++...
T Consensus 165 ~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~ 244 (322)
T 2p4h_X 165 TLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENSVPG 244 (322)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGGCCEEEEEEEEHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCccCcCCCcCEEEHHHHHHHHHHHhhCcCCC
Confidence 22221 2222334799999999999986432110 00 00100 00124789999999999999876544
Q ss_pred CcEEEEeeCCcchhhHHHHHHHHh
Q 028525 180 GLIFEVVNGEEKVSDWKKCFSRLM 203 (208)
Q Consensus 180 ~~~~~i~~~~~~~~e~~~~~~~~~ 203 (208)
+ .|++.+...++.|+++.+.+..
T Consensus 245 g-~~~~~~~~~s~~e~~~~i~~~~ 267 (322)
T 2p4h_X 245 G-RYNCSPFIVPIEEMSQLLSAKY 267 (322)
T ss_dssp E-EEECCCEEEEHHHHHHHHHHHC
T ss_pred C-CEEEcCCCCCHHHHHHHHHHhC
Confidence 5 4885433358999999988765
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-21 Score=144.60 Aligned_cols=167 Identities=12% Similarity=0.034 Sum_probs=123.1
Q ss_pred cccCccHHHHHHHHHhCCC--cEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc---------
Q 028525 8 KRKKMNFRMVILSLIVKRT--RIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF--------- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~--~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~--------- 76 (208)
++||+||++++++|+++|+ +|++++|++++ ...+++++.+|++|++++.+++ +|+||++++..
T Consensus 12 GatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~----~~~~~~~~~~D~~~~~~~~~~~--~d~vi~~a~~~~~~~~~~~~ 85 (215)
T 2a35_A 12 GATGLTGEHLLDRILSEPTLAKVIAPARKALA----EHPRLDNPVGPLAELLPQLDGS--IDTAFCCLGTTIKEAGSEEA 85 (215)
T ss_dssp CTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----CCTTEECCBSCHHHHGGGCCSC--CSEEEECCCCCHHHHSSHHH
T ss_pred CCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc----cCCCceEEeccccCHHHHHHhh--hcEEEECeeeccccCCCHHH
Confidence 4699999999999999998 99999998776 2347889999999999888887 99999883211
Q ss_pred -----------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCC-EEEEeccccccCCCC
Q 028525 77 -----------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIP-YTIIRTGVLQNTPGG 144 (208)
Q Consensus 77 -----------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~-~tivRp~~~~~~~~~ 144 (208)
+.+++.+.++++||++||.+++.. +..+|.. .| ..+|++++..+++ ++++||+.+++....
T Consensus 86 ~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~--~~~~y~~--sK---~~~e~~~~~~~~~~~~~vrp~~v~g~~~~ 158 (215)
T 2a35_A 86 FRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK--SSIFYNR--VK---GELEQALQEQGWPQLTIARPSLLFGPREE 158 (215)
T ss_dssp HHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT--CSSHHHH--HH---HHHHHHHTTSCCSEEEEEECCSEESTTSC
T ss_pred HHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCCC--CccHHHH--HH---HHHHHHHHHcCCCeEEEEeCceeeCCCCc
Confidence 234566788999999999988763 2233432 22 2568888888999 999999999865432
Q ss_pred cccee-e-----ecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC
Q 028525 145 KQGFQ-F-----EEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE 189 (208)
Q Consensus 145 ~~~~~-~-----~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~ 189 (208)
..... + ...+....+++.+|+|++++.+++++. ++.|++++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~--~~~~~i~~~~ 207 (215)
T 2a35_A 159 FRLAEILAAPIARILPGKYHGIEACDLARALWRLALEEG--KGVRFVESDE 207 (215)
T ss_dssp EEGGGGTTCCCC----CHHHHHHHHHHHHHHHHHHTCCC--SEEEEEEHHH
T ss_pred chHHHHHHHhhhhccCCCcCcEeHHHHHHHHHHHHhcCC--CCceEEcHHH
Confidence 11000 0 000112356888999999999998775 7899998644
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.2e-19 Score=136.24 Aligned_cols=182 Identities=14% Similarity=0.005 Sum_probs=128.5
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCCCc--------
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG--VRSIICPSEGF-------- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~~~-------- 76 (208)
-++||+||++++++|+ +||+|++++|+++.. .+ +.+|++|++++.+++++ +|+||++++..
T Consensus 6 tGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~-----~~---~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~ 76 (273)
T 2ggs_A 6 TGASGQLGIELSRLLS-ERHEVIKVYNSSEIQ-----GG---YKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIE 76 (273)
T ss_dssp ETTTSHHHHHHHHHHT-TTSCEEEEESSSCCT-----TC---EECCTTSHHHHHHHHHHHCCSEEEECCCCCCHHHHHHC
T ss_pred ECCCChhHHHHHHHHh-cCCeEEEecCCCcCC-----CC---ceeccCCHHHHHHHHHhcCCCEEEECCcccChhhhhhC
Confidence 3679999999999999 489999999987431 22 78999999999999986 99999883210
Q ss_pred --------------hhhhhhhcCCCeEEEeceeeeccCCCC-------cccccchhHHHhHHHHHHHHHhcCCCEEEEec
Q 028525 77 --------------ISNAGSLKGVQHVILLSQLSVYRGSGG-------IQALMKGNARKLAEQDESMLMASGIPYTIIRT 135 (208)
Q Consensus 77 --------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~-------~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp 135 (208)
+.+++...++ +||++||.++|..... ..+...+.. .+..+|.+++. ++++++||
T Consensus 77 ~~~~~~~n~~~~~~l~~~~~~~~~-~iv~~SS~~~~~~~~~~~~e~~~~~~~~~Y~~--sK~~~e~~~~~--~~~~~iR~ 151 (273)
T 2ggs_A 77 KEKAYKINAEAVRHIVRAGKVIDS-YIVHISTDYVFDGEKGNYKEEDIPNPINYYGL--SKLLGETFALQ--DDSLIIRT 151 (273)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTTC-EEEEEEEGGGSCSSSCSBCTTSCCCCSSHHHH--HHHHHHHHHCC--TTCEEEEE
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCC-eEEEEecceeEcCCCCCcCCCCCCCCCCHHHH--HHHHHHHHHhC--CCeEEEec
Confidence 2344556676 8999999988753211 111111111 12245666666 89999999
Q ss_pred cccccCCC----------CccceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCcchhhHHHHHHHHhhh
Q 028525 136 GVLQNTPG----------GKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVSDWKKCFSRLMEK 205 (208)
Q Consensus 136 ~~~~~~~~----------~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~ 205 (208)
+.+++... .+..... .+. ...+++.+|+|++++.+++++. ++.|++++...+..|+++.+.+.+|.
T Consensus 152 ~~v~G~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~dva~~i~~~~~~~~--~g~~~i~~~~~s~~e~~~~~~~~~g~ 227 (273)
T 2ggs_A 152 SGIFRNKGFPIYVYKTLKEGKTVFA-FKG-YYSPISARKLASAILELLELRK--TGIIHVAGERISRFELALKIKEKFNL 227 (273)
T ss_dssp CCCBSSSSHHHHHHHHHHTTCCEEE-ESC-EECCCBHHHHHHHHHHHHHHTC--CEEEECCCCCEEHHHHHHHHHHHTTC
T ss_pred cccccccHHHHHHHHHHHcCCCEEe-ecC-CCCceEHHHHHHHHHHHHhcCc--CCeEEECCCcccHHHHHHHHHHHhCC
Confidence 99985211 0011111 111 4567899999999999998654 56999997335999999999999886
Q ss_pred c
Q 028525 206 T 206 (208)
Q Consensus 206 ~ 206 (208)
+
T Consensus 228 ~ 228 (273)
T 2ggs_A 228 P 228 (273)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=137.83 Aligned_cols=171 Identities=13% Similarity=0.090 Sum_probs=123.2
Q ss_pred cccCccHHHHHHHHHhCCC--cEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc---------
Q 028525 8 KRKKMNFRMVILSLIVKRT--RIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF--------- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~--~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~--------- 76 (208)
+++|+||++++++|+++|+ +|++++|++++.......++.++.+|++|++++.++++++|+||++++..
T Consensus 25 Gasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~ 104 (242)
T 2bka_A 25 GASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGF 104 (242)
T ss_dssp CTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcccccCCcccc
Confidence 3599999999999999999 99999998876433222468899999999999999999999999884321
Q ss_pred ----------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCC-EEEEeccccccCCCCc
Q 028525 77 ----------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIP-YTIIRTGVLQNTPGGK 145 (208)
Q Consensus 77 ----------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~-~tivRp~~~~~~~~~~ 145 (208)
+.+++.+.++++||++||.+++.. +..+|.. .| ..+|.+++..+++ +++||||.+++.....
T Consensus 105 ~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~--~~~~Y~~--sK---~~~e~~~~~~~~~~~~~vrpg~v~~~~~~~ 177 (242)
T 2bka_A 105 VRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS--SNFLYLQ--VK---GEVEAKVEELKFDRYSVFRPGVLLCDRQES 177 (242)
T ss_dssp HHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT--CSSHHHH--HH---HHHHHHHHTTCCSEEEEEECCEEECTTGGG
T ss_pred eeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCC--CcchHHH--HH---HHHHHHHHhcCCCCeEEEcCceecCCCCCC
Confidence 234566778999999999988763 2234433 22 2468888888995 9999999997653211
Q ss_pred cc--ee----ee-cC--CcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEe
Q 028525 146 QG--FQ----FE-EG--CAANGSLSKEDAAFICVEALESIPQTGLIFEVV 186 (208)
Q Consensus 146 ~~--~~----~~-~~--~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~ 186 (208)
.. .. .. .+ .....+++.+|+|++++.++.++... ..+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~-~~~~~~ 226 (242)
T 2bka_A 178 RPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDK-QMELLE 226 (242)
T ss_dssp SHHHHHHHHHHCSCCTTGGGGTEEEHHHHHHHHHHHHTSCCCS-SEEEEE
T ss_pred cHHHHHHHHhhcccCccccCCcccCHHHHHHHHHHHHhCcccc-CeeEee
Confidence 00 00 00 01 01235789999999999999876653 455554
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.2e-18 Score=131.33 Aligned_cols=202 Identities=13% Similarity=0.093 Sum_probs=121.4
Q ss_pred Cchhhhc-----cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----h-----cCCceEEEEcCCCCHHHHHHHhc--
Q 028525 1 MGPMKKM-----KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----S-----FGTYVESMAGDASNKKFLKTALR-- 64 (208)
Q Consensus 1 ~~~~~~~-----~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~-----~~~~v~~v~~Dl~d~~~l~~~~~-- 64 (208)
|.+|.++ +++|.||++++++|+++|++|++++|++++..+ . .+.++.++.+|++|++++.++++
T Consensus 1 m~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (278)
T 1spx_A 1 MTRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT 80 (278)
T ss_dssp -CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHH
Confidence 5566443 469999999999999999999999999765321 1 12358899999999999998887
Q ss_pred -----CCCEEEEcCC----C---------c-----------------h----hhhhhhcCCCeEEEeceeee-ccCCCCc
Q 028525 65 -----GVRSIICPSE----G---------F-----------------I----SNAGSLKGVQHVILLSQLSV-YRGSGGI 104 (208)
Q Consensus 65 -----~~d~vi~~~~----~---------~-----------------~----~~a~~~~gv~~~v~~Ss~~~-~~~~~~~ 104 (208)
++|++|++++ + . . ...+++.+ ++||++||... +.+..+.
T Consensus 81 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~ 159 (278)
T 1spx_A 81 LGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHATPDF 159 (278)
T ss_dssp HHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCCTTS
T ss_pred HHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEecccccccCCCCc
Confidence 7999998732 1 1 0 01122345 79999999876 5443334
Q ss_pred ccccchhHHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCccce----e---------eecCCcCCCcccHHHHHHHH
Q 028525 105 QALMKGNARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGF----Q---------FEEGCAANGSLSKEDAAFIC 169 (208)
Q Consensus 105 ~~~~~~~~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~----~---------~~~~~~~~~~v~~~Dva~~~ 169 (208)
..|..+++-. +.+.....+...++++++||||++.......... . +........+.+.+|+|+++
T Consensus 160 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v 239 (278)
T 1spx_A 160 PYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVI 239 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTTSSCBCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhcCCCcCCCCHHHHHHHH
Confidence 4454433211 1111112233469999999999986543211000 0 00001123467889999999
Q ss_pred HHHhhCCC---CCCcEEEEeeCCc-chhhHHHHHHHHh
Q 028525 170 VEALESIP---QTGLIFEVVNGEE-KVSDWKKCFSRLM 203 (208)
Q Consensus 170 ~~~l~~~~---~~~~~~~i~~~~~-~~~e~~~~~~~~~ 203 (208)
+.++.++. ..|+.+++.+|.. +..++++++.+++
T Consensus 240 ~~l~s~~~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 240 AFLADRKTSSYIIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp HHHHCHHHHTTCCSCEEEESTTGGGC------------
T ss_pred HHHcCccccCcccCcEEEECCCcccccCcccccHHHHh
Confidence 99887543 3488999987754 8899999888754
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-18 Score=131.23 Aligned_cols=193 Identities=7% Similarity=0.012 Sum_probs=129.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcC--CceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFG--TYVESMAGDASNKKFLKTALR-------GVRSIICPSE- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~--~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~- 74 (208)
+++|.||++++++|+++|++|++++|+.++... ... .++.++.+|++|++++.++++ ++|+||++++
T Consensus 23 GasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~Ag~ 102 (278)
T 2bgk_A 23 GGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGV 102 (278)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 469999999999999999999999998765321 122 268999999999999998886 7899998722
Q ss_pred -----Cc----------------------hh----hhhhhcCCCeEEEeceeeeccCCC-CcccccchhHHHhHHH-HH-
Q 028525 75 -----GF----------------------IS----NAGSLKGVQHVILLSQLSVYRGSG-GIQALMKGNARKLAEQ-DE- 120 (208)
Q Consensus 75 -----~~----------------------~~----~a~~~~gv~~~v~~Ss~~~~~~~~-~~~~~~~~~~~~~~~~-~e- 120 (208)
.. +. ..+.+.+.++||++||..++.... +...|...+ ...+. ++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~Y~~sK--~a~~~~~~~ 180 (278)
T 2bgk_A 103 LSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATK--HAVLGLTTS 180 (278)
T ss_dssp CCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTTSCHHHHHHH--HHHHHHHHH
T ss_pred cCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCCCCCcchHHHH--HHHHHHHHH
Confidence 10 00 112335678999999998776433 344454432 22111 11
Q ss_pred --HHHHhcCCCEEEEeccccccCCCCcc-c---ee---e--ecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEee
Q 028525 121 --SMLMASGIPYTIIRTGVLQNTPGGKQ-G---FQ---F--EEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVN 187 (208)
Q Consensus 121 --~~l~~~~~~~tivRp~~~~~~~~~~~-~---~~---~--~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~ 187 (208)
..+...+++++++|||.+........ . .. + ..+.....+++.+|+|++++.++.++. ..|+.|++.+
T Consensus 181 la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~g 260 (278)
T 2bgk_A 181 LCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDG 260 (278)
T ss_dssp HHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSCSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred HHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhcccccccccCCHHHHHHHHHHHcCcccccCCCCEEEECC
Confidence 11224699999999999865432211 0 00 0 011122457789999999999987543 3488999987
Q ss_pred CC-cchhhHHHHHHHH
Q 028525 188 GE-EKVSDWKKCFSRL 202 (208)
Q Consensus 188 ~~-~~~~e~~~~~~~~ 202 (208)
|. .+..|+++.+.++
T Consensus 261 g~~~~~~e~~~~i~~~ 276 (278)
T 2bgk_A 261 GYTRTNPAFPTALKHG 276 (278)
T ss_dssp TGGGCCTHHHHHSCSC
T ss_pred cccccCCccchhhhhh
Confidence 66 4889998887654
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.6e-17 Score=124.91 Aligned_cols=191 Identities=13% Similarity=0.098 Sum_probs=127.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCCc-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEGF- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~~- 76 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++ ++|+||++++..
T Consensus 12 Gas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~ 91 (281)
T 3m1a_A 12 GASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVLVNNAGRTQ 91 (281)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCEE
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCEEEECCCcCC
Confidence 469999999999999999999999999876432 234579999999999999998886 789999873210
Q ss_pred -----------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHH-HHHHH---H
Q 028525 77 -----------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAE-QDESM---L 123 (208)
Q Consensus 77 -----------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~-~~e~~---l 123 (208)
....+++.+.++||++||...+.+..+..+|..+++ ..+ .++.+ +
T Consensus 92 ~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~--a~~~~~~~la~e~ 169 (281)
T 3m1a_A 92 VGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKA--ALEQLSEGLADEV 169 (281)
T ss_dssp ECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHH--HHHHHHHHHHHHH
T ss_pred CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCCCCCchHHHHHHH--HHHHHHHHHHHHh
Confidence 012245567889999999987765555566655332 211 12222 2
Q ss_pred HhcCCCEEEEeccccccCCCCcccee-----------------eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEe
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQGFQ-----------------FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVV 186 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~~~~-----------------~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~ 186 (208)
...+++++++|||.+........... +........+.+.+|+|++++.+++++.. +..|+++
T Consensus 170 ~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~~~~~~~~-~~~~~l~ 248 (281)
T 3m1a_A 170 APFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLVQGSDGSQPGDPAKAAAAIRLALDTEKT-PLRLALG 248 (281)
T ss_dssp GGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHHHC-----CBCHHHHHHHHHHHHHSSSC-CSEEEES
T ss_pred hccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHHhhccCCCCCCHHHHHHHHHHHHhCCCC-CeEEecC
Confidence 23799999999999864322111000 00011223457789999999999987754 5688888
Q ss_pred eCCc-chhhHHHHHHH
Q 028525 187 NGEE-KVSDWKKCFSR 201 (208)
Q Consensus 187 ~~~~-~~~e~~~~~~~ 201 (208)
++.. .+.+....+.+
T Consensus 249 s~~~~~i~g~~~~i~~ 264 (281)
T 3m1a_A 249 GDAVDFLTGHLDSVRA 264 (281)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 6554 44444444433
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-17 Score=124.15 Aligned_cols=183 Identities=10% Similarity=0.036 Sum_probs=121.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++.... .+.++.++.+|++|++++.++++ ++|+||++++
T Consensus 18 GasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag 97 (255)
T 1fmc_A 18 GAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAG 97 (255)
T ss_dssp TTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3699999999999999999999999987653211 23468899999999999998886 7999998722
Q ss_pred ----Cc---------------------hhh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHH
Q 028525 75 ----GF---------------------ISN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 75 ----~~---------------------~~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
.. +.+ .+++.+.++||++||...+.+..+...|...+... +.+.....+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~ 177 (255)
T 1fmc_A 98 GGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDL 177 (255)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 10 011 12356778999999998776544455555433211 111111122
Q ss_pred HhcCCCEEEEeccccccCCCCc---cce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCc
Q 028525 124 MASGIPYTIIRTGVLQNTPGGK---QGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEE 190 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~---~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~ 190 (208)
...+++++++|||.+....... ... .+........+.+.+|+|++++.++.++. ..++.|++.+|..
T Consensus 178 ~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~ 251 (255)
T 1fmc_A 178 GEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGGV 251 (255)
T ss_dssp HTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred hhcCcEEEEEecccCcchhhhhccChHHHHHHHhcCCcccCCCHHHHHHHHHHHhCCccccCCCcEEEECCcee
Confidence 3458999999999986431100 000 01111222456789999999999987643 2478999987654
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=122.02 Aligned_cols=181 Identities=13% Similarity=0.079 Sum_probs=120.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ .....+.++.+|++|++++.++++ ++|++|++++
T Consensus 14 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~ 93 (260)
T 1nff_A 14 GGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILN 93 (260)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 469999999999999999999999999766432 222358889999999999999887 7999998732
Q ss_pred -Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 75 -GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 75 -~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
+. ....+++.+.++||++||...+.+..+...|..+++.. +.+.....+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~ 173 (260)
T 1nff_A 94 IGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGP 173 (260)
T ss_dssp CBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCCCCchhHHHHHHHHHHHHHHHHHHhCc
Confidence 10 01224456778999999998776444444555433211 11111122334
Q ss_pred cCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.++++++||||++...........+. ......+.+.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 174 ~gi~v~~v~Pg~v~t~~~~~~~~~~~-~~~~~~~~~~~dvA~~v~~l~s~~~~~~~G~~~~v~gG~ 238 (260)
T 1nff_A 174 SGIRVNSIHPGLVKTPMTDWVPEDIF-QTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGT 238 (260)
T ss_dssp GTEEEEEEEECCBCSGGGTTSCTTCS-CCSSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cCcEEEEEEeCCCCCCccccchhhHH-hCccCCCCCHHHHHHHHHHHhCccccCCcCCEEEECCCe
Confidence 69999999999986532110000000 1112345678999999999987543 247899998764
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=129.44 Aligned_cols=196 Identities=11% Similarity=0.072 Sum_probs=127.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------cCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------FGTYVESMAGDASNKKFLKTALRG-------VRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|+.++.... .+.++.++.+|++|++++.++++. +|+||+++
T Consensus 33 GasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~A 112 (302)
T 1w6u_A 33 GGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNA 112 (302)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3699999999999999999999999997653211 145689999999999999888754 59999873
Q ss_pred C----Cc----------------------hhh----hhh-hcCCCeEEEeceeeeccCCCCcccccchhHHHhHH-HHHH
Q 028525 74 E----GF----------------------ISN----AGS-LKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAE-QDES 121 (208)
Q Consensus 74 ~----~~----------------------~~~----a~~-~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~-~~e~ 121 (208)
+ +. +.. .+. +.+..+||++||..++.+..+...|..++ ...+ .++.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK--~a~~~~~~~ 190 (302)
T 1w6u_A 113 AGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAK--AGVEAMSKS 190 (302)
T ss_dssp CCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTTCHHHHHHH--HHHHHHHHH
T ss_pred CCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCCCCcchhHHHH--HHHHHHHHH
Confidence 2 10 001 122 34567999999987765444444555433 2211 1111
Q ss_pred ---HHHhcCCCEEEEeccccccCCCCcc----ce---eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCC
Q 028525 122 ---MLMASGIPYTIIRTGVLQNTPGGKQ----GF---QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGE 189 (208)
Q Consensus 122 ---~l~~~~~~~tivRp~~~~~~~~~~~----~~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~ 189 (208)
.+...+++++++|||.+........ .. .+........+.+.+|+|++++.++.++.. .|+.|++.+|.
T Consensus 191 la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 270 (302)
T 1w6u_A 191 LAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAFLCSDYASWINGAVIKFDGGE 270 (302)
T ss_dssp HHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred HHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcCCcCCCCCHHHHHHHHHHHcCCcccccCCCEEEECCCe
Confidence 2233789999999999865311110 00 011111223467889999999999875432 57899998765
Q ss_pred c-chhhHHHHHHHHhhh
Q 028525 190 E-KVSDWKKCFSRLMEK 205 (208)
Q Consensus 190 ~-~~~e~~~~~~~~~~~ 205 (208)
. +.+++++.+.++.++
T Consensus 271 ~~~~~~~~~~~~~~~g~ 287 (302)
T 1w6u_A 271 EVLISGEFNDLRKVTKE 287 (302)
T ss_dssp HHHHHSTTGGGGGCCHH
T ss_pred eeccCCccccchhhccc
Confidence 4 667777666655543
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=120.80 Aligned_cols=182 Identities=11% Similarity=0.074 Sum_probs=120.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----h---cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----S---FGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~---~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|+.++..+ . .+.++.++.+|++|++++.++++ ++|+||+++
T Consensus 9 GasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~A 88 (250)
T 2cfc_A 9 GASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNA 88 (250)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 579999999999999999999999998765321 1 13468999999999999998886 789999872
Q ss_pred C----Cc---h--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHH
Q 028525 74 E----GF---I--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQ 118 (208)
Q Consensus 74 ~----~~---~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~ 118 (208)
+ +. + ...+.+.+.++||++||...+.+..+...|...+... +.+.
T Consensus 89 g~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~ 168 (250)
T 2cfc_A 89 GITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKS 168 (250)
T ss_dssp CCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCCCchhHHHHHHHHHHHHHH
Confidence 2 10 0 1123345778999999988765444444555433211 1111
Q ss_pred HHHHHHhcCCCEEEEeccccccCCCCc-c---ce--eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCC
Q 028525 119 DESMLMASGIPYTIIRTGVLQNTPGGK-Q---GF--QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGE 189 (208)
Q Consensus 119 ~e~~l~~~~~~~tivRp~~~~~~~~~~-~---~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~ 189 (208)
....+...+++++++|||.+....... . .+ .+........+.+.+|+|++++.++.++.. .|+.+++.+|.
T Consensus 169 l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 247 (250)
T 2cfc_A 169 VAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTAAQVADAVMFLAGEDATYVNGAALVMDGAY 247 (250)
T ss_dssp HHHHHGGGTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSTTCTTCCSCEEEESTTG
T ss_pred HHHHhcccCeEEEEEEeCcCccCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhhcccCCEEEECCce
Confidence 111223459999999999986543211 0 00 011111223456889999999999876543 48888887553
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=126.67 Aligned_cols=174 Identities=7% Similarity=0.021 Sum_probs=115.7
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc----CCCEEEEcCC--C---c-
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR----GVRSIICPSE--G---F- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~----~~d~vi~~~~--~---~- 76 (208)
-+++|+||++++++|+++|++|++++|++++... .+.+|++|++++.++++ ++|+||++++ . .
T Consensus 7 tGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~ 79 (255)
T 2dkn_A 7 TGSASGIGAALKELLARAGHTVIGIDRGQADIEA-------DLSTPGGRETAVAAVLDRCGGVLDGLVCCAGVGVTAANS 79 (255)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-------CTTSHHHHHHHHHHHHHHHTTCCSEEEECCCCCTTSSCH
T ss_pred eCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc-------cccCCcccHHHHHHHHHHcCCCccEEEECCCCCCcchhH
Confidence 3579999999999999999999999998765431 16789999999999886 7999998722 1 1
Q ss_pred -------------hhh----hhhhcCCCeEEEeceeeeccCC--------------------------CCcccccchhHH
Q 028525 77 -------------ISN----AGSLKGVQHVILLSQLSVYRGS--------------------------GGIQALMKGNAR 113 (208)
Q Consensus 77 -------------~~~----a~~~~gv~~~v~~Ss~~~~~~~--------------------------~~~~~~~~~~~~ 113 (208)
+.+ .+.+.+.++||++||..++... .+...|.. .|
T Consensus 80 ~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~--sK 157 (255)
T 2dkn_A 80 GLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQGQTHLAYAG--SK 157 (255)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHHHHHHHCCHHHHHHH--HH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhhhccccCCcchhHHH--HH
Confidence 111 2334567899999999887533 11122322 22
Q ss_pred HhHHHHHHHH-------HhcCCCEEEEeccccccCCCCc-------cce-eeecCCcCCCcccHHHHHHHHHHHhhCCC-
Q 028525 114 KLAEQDESML-------MASGIPYTIIRTGVLQNTPGGK-------QGF-QFEEGCAANGSLSKEDAAFICVEALESIP- 177 (208)
Q Consensus 114 ~~~~~~e~~l-------~~~~~~~tivRp~~~~~~~~~~-------~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~- 177 (208)
.. .|.+. ...+++++++|||.+....... ... ....+ ....+++.+|+|++++.++.++.
T Consensus 158 ~a---~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dva~~~~~l~~~~~~ 233 (255)
T 2dkn_A 158 YA---VTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQASKADPRYGESTRRFVA-PLGRGSEPREVAEAIAFLLGPQAS 233 (255)
T ss_dssp HH---HHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHHHHHCTTTHHHHHSCCC-TTSSCBCHHHHHHHHHHHHSGGGT
T ss_pred HH---HHHHHHHHHHHHhhcCcEEEEEcCCcccchhhhhcccchhhHHHHHHHHH-HhcCCCCHHHHHHHHHHHhCCCcc
Confidence 21 22222 2368999999999986431100 000 00001 33467899999999999998663
Q ss_pred -CCCcEEEEeeCCc-chh
Q 028525 178 -QTGLIFEVVNGEE-KVS 193 (208)
Q Consensus 178 -~~~~~~~i~~~~~-~~~ 193 (208)
..++.|++.+|.. +++
T Consensus 234 ~~~G~~~~v~gg~~~~~~ 251 (255)
T 2dkn_A 234 FIHGSVLFVDGGMDALMR 251 (255)
T ss_dssp TCCSCEEEESTTHHHHHC
T ss_pred cceeeEEEecCCeEeeee
Confidence 4588999986653 443
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=120.60 Aligned_cols=181 Identities=11% Similarity=0.109 Sum_probs=118.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|+.++.... .+.++.++.+|++|++++.++++ ++|+||+++
T Consensus 14 GasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~A 93 (248)
T 2pnf_A 14 GSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNA 93 (248)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSSCCSEEEECC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 4699999999999999999999999987653221 24468899999999999998886 789999873
Q ss_pred C----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 E----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+ +. ....+.+.+.++||++||...+.+..+...|...+... +.+....
T Consensus 94 g~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~ 173 (248)
T 2pnf_A 94 GITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAK 173 (248)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 2 10 01123456788999999986554333344454432211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCcc--ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQ--GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~--~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+...+++++++|||++........ .. .+........+.+.+|+|++++.++.++. ..|+.|++.+|
T Consensus 174 e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 246 (248)
T 2pnf_A 174 ELAPRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQIPLGRFGSPEEVANVVLFLCSELASYITGEVIHVNGG 246 (248)
T ss_dssp HHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HhcccCeEEEEEEeceecCchhhhccHHHHHHHHhcCCCCCccCHHHHHHHHHHHhCchhhcCCCcEEEeCCC
Confidence 2334689999999999864321110 00 01111122456789999999999987542 34889998755
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.8e-16 Score=118.68 Aligned_cols=181 Identities=12% Similarity=0.088 Sum_probs=119.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---c-----CCceEEEEcCCCCHHHHHHHhc------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---F-----GTYVESMAGDASNKKFLKTALR------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~-----~~~v~~v~~Dl~d~~~l~~~~~------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|++++..+. . +.++.++.+|++|++++.++++ ++|++|+++
T Consensus 14 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~gid~lv~~A 93 (260)
T 2z1n_A 14 AGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLGGADILVYST 93 (260)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 4699999999999999999999999987653221 1 2268899999999999998886 699999873
Q ss_pred C----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 E----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+ +. ....+.+.+.++||++||...+.+..+...|..+++-. +.+....
T Consensus 94 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~ 173 (260)
T 2z1n_A 94 GGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLAL 173 (260)
T ss_dssp CCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHTHHHHHHHHHHHH
T ss_pred CCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 2 11 01223456778999999998776544444555433211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCC----------ccc-e----eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEE
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGG----------KQG-F----QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFE 184 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~----------~~~-~----~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~ 184 (208)
.+...+++++.|+||++...... ... . .+........+.+.+|+|++++.++.++. ..|+.++
T Consensus 174 e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~l~s~~~~~~tG~~i~ 253 (260)
T 2z1n_A 174 ELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIPMGRVGKPEELASVVAFLASEKASFITGAVIP 253 (260)
T ss_dssp HHGGGTEEEEEEEECHHHHCCCC-----------------------CCTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEE
T ss_pred HHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHHhcCCCCCccCHHHHHHHHHHHhCccccCCCCCEEE
Confidence 23346899999999998654322 000 0 01011112335578999999999987643 3578888
Q ss_pred EeeC
Q 028525 185 VVNG 188 (208)
Q Consensus 185 i~~~ 188 (208)
+.+|
T Consensus 254 vdGG 257 (260)
T 2z1n_A 254 VDGG 257 (260)
T ss_dssp ESTT
T ss_pred eCCC
Confidence 8754
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=120.72 Aligned_cols=181 Identities=12% Similarity=0.101 Sum_probs=118.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cC--CceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FG--TYVESMAGDASNKKFLKTALR-------GVRSIICPSE- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~--~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~- 74 (208)
+++|.||++++++|+++|++|++++|+.++.... .. .++.++.+|++|++++.++++ .+|+||++++
T Consensus 13 GasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~Ag~ 92 (251)
T 1zk4_A 13 GGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGI 92 (251)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 4699999999999999999999999987653221 11 468999999999999988876 4899998732
Q ss_pred ---Cc--------------------------hhhhhhhcCC-CeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 75 ---GF--------------------------ISNAGSLKGV-QHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 75 ---~~--------------------------~~~a~~~~gv-~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
+. ....+++.+. ++||++||...+.+..+...|..++... +.+.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~~a~e 172 (251)
T 1zk4_A 93 AVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALD 172 (251)
T ss_dssp CCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCCCCCccchHHHHHHHHHHHHHHHH
Confidence 10 0122445566 7999999988776544445555433211 11111111
Q ss_pred HH--hcCCCEEEEeccccccCCCCc--ccee---eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 123 LM--ASGIPYTIIRTGVLQNTPGGK--QGFQ---FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 123 l~--~~~~~~tivRp~~~~~~~~~~--~~~~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+. ..+++++++|||++....... .... +........+.+.+|+|++++.++.++. ..|+.+++.+|
T Consensus 173 ~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 247 (251)
T 1zk4_A 173 CALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEPNDIAYICVYLASNESKFATGSEFVVDGG 247 (251)
T ss_dssp HHHTTCSEEEEEEEECCBCCHHHHTSTTHHHHHTSTTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hcccCCCeEEEEEeeCcCcchhhhhcCchhhhHHHhhcCCCCCCcCHHHHHHHHHHHcCcccccccCcEEEECCC
Confidence 22 568999999999986431100 0000 1111122346788999999999987653 34788888755
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=120.52 Aligned_cols=182 Identities=13% Similarity=0.085 Sum_probs=120.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~-- 75 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+..+.++.+|++|++++.++++ ++|++|++++-
T Consensus 15 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~ 94 (259)
T 4e6p_A 15 GSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFD 94 (259)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCEEEECCCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC
Confidence 358999999999999999999999999876432 234578999999999999998886 78999987321
Q ss_pred --ch----------------------hh----hhhhcC-CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHH
Q 028525 76 --FI----------------------SN----AGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLM 124 (208)
Q Consensus 76 --~~----------------------~~----a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~ 124 (208)
.+ .+ .+.+.+ -.+||++||...+.+..+...|..+++-. +.+.....+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~ 174 (259)
T 4e6p_A 95 LAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLI 174 (259)
T ss_dssp CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCCCCChHHHHHHHHHHHHHHHHHHHhh
Confidence 10 01 122333 45899999998776554455565533211 1111112233
Q ss_pred hcCCCEEEEeccccccCCCCcc--------------c-eeeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEee
Q 028525 125 ASGIPYTIIRTGVLQNTPGGKQ--------------G-FQFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVN 187 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~~--------------~-~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~ 187 (208)
..+++++.|+||.+........ . ..+....+...+.+.+|+|++++.++..+.. .|+.|++.+
T Consensus 175 ~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdg 254 (259)
T 4e6p_A 175 KHRINVNAIAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFLASAESDYIVSQTYNVDG 254 (259)
T ss_dssp GGTEEEEEEEECCBCSTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCTHHHHHHHHHTTSGGGTTCCSCEEEEST
T ss_pred hcCCEEEEEEECCCccchhhhhhhhhhhhccCChHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECc
Confidence 4689999999999864321100 0 0011112234567889999999988865432 489999986
Q ss_pred CC
Q 028525 188 GE 189 (208)
Q Consensus 188 ~~ 189 (208)
|.
T Consensus 255 G~ 256 (259)
T 4e6p_A 255 GN 256 (259)
T ss_dssp TS
T ss_pred Ch
Confidence 64
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=120.48 Aligned_cols=179 Identities=14% Similarity=0.073 Sum_probs=119.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc--CCceEEEEcCCCCHHHHHHHhcC---CCEEEEcCC----Cc--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF--GTYVESMAGDASNKKFLKTALRG---VRSIICPSE----GF-- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~~---~d~vi~~~~----~~-- 76 (208)
+++|.||++++++|+++|++|++++|+.++..+.. ..+++++.+|++|++++.++++. +|+||++++ ..
T Consensus 14 GasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~ 93 (244)
T 1cyd_A 14 GAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAALVIMQPFL 93 (244)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCCCCCCBCGG
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEECCcccCCCCcc
Confidence 46999999999999999999999999976643221 13578889999999999999873 699998732 10
Q ss_pred --------------------hhh----hhhhcC-CCeEEEeceeeeccCCCCcccccchhHHHhHH-HHHH---HHHhcC
Q 028525 77 --------------------ISN----AGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARKLAE-QDES---MLMASG 127 (208)
Q Consensus 77 --------------------~~~----a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~-~~e~---~l~~~~ 127 (208)
+.+ .+.+.+ .++||++||..++.+..+...|...+ ...+ .++. .+...+
T Consensus 94 ~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK--~a~~~~~~~~a~~~~~~g 171 (244)
T 1cyd_A 94 EVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTK--GAMTMLTKAMAMELGPHK 171 (244)
T ss_dssp GCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHH--HHHHHHHHHHHHHHGGGT
T ss_pred cCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCCCCcchhHHHH--HHHHHHHHHHHHHhhhcC
Confidence 011 122345 67999999998776544445555432 2211 1111 122368
Q ss_pred CCEEEEeccccccCCCC----ccce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 128 IPYTIIRTGVLQNTPGG----KQGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 128 ~~~tivRp~~~~~~~~~----~~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
++++++|||.+...... ...+ .+........+++.+|+|++++.++.++. ..|+.+++.+|
T Consensus 172 i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 240 (244)
T 1cyd_A 172 IRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAG 240 (244)
T ss_dssp EEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSSEEEESTT
T ss_pred eEEEEEecCcccCccccccccCHHHHHHHHhcCCccCCCCHHHHHHHHHHHhCchhhcccCCEEEECCC
Confidence 99999999998643211 0000 01111223567899999999999997653 24788888755
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=118.94 Aligned_cols=163 Identities=15% Similarity=0.029 Sum_probs=105.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc--CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF--GTYVESMAGDASNKKFLKTALR-------GVRSIICPSE---- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~---- 74 (208)
+++|.||++++++|+++|++|++++|+.++..... -.++.++.+|++|++++.++++ ++|++|++++
T Consensus 12 GasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~Ag~~~~ 91 (234)
T 2ehd_A 12 GASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALVNNAGVGVM 91 (234)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCC
Confidence 46999999999999999999999999877643221 1268899999999999888775 6799998732
Q ss_pred Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhc
Q 028525 75 GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMAS 126 (208)
Q Consensus 75 ~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~ 126 (208)
+. ....+++.+.++||++||...+.+..+...|...+... +.+.....+...
T Consensus 92 ~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~ 171 (234)
T 2ehd_A 92 KPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREA 171 (234)
T ss_dssp SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCCCCCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 11 01224456788999999988776444444554433211 111111223347
Q ss_pred CCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 127 GIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
+++++++|||++....... . . .. ..+++.+|+|++++.++.++.
T Consensus 172 gi~v~~v~Pg~v~t~~~~~--~--~--~~-~~~~~~~dvA~~~~~l~~~~~ 215 (234)
T 2ehd_A 172 NVRVVNVLPGSVDTGFAGN--T--P--GQ-AWKLKPEDVAQAVLFALEMPG 215 (234)
T ss_dssp TEEEEEEECC-----------------------CCHHHHHHHHHHHHHSCC
T ss_pred CcEEEEEEeCCCcCCcccc--c--c--cc-cCCCCHHHHHHHHHHHhCCCc
Confidence 8999999999885432211 1 0 00 125789999999999998765
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=122.11 Aligned_cols=182 Identities=12% Similarity=0.070 Sum_probs=120.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---c----CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---F----GTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~----~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|+.++..+. . +.++.++.+|++|++++.++++ ++|++|+++
T Consensus 14 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~A 93 (263)
T 3ai3_A 14 GSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGGADILVNNA 93 (263)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHSSCSEEEECC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4699999999999999999999999997653221 1 4568899999999999988886 789999873
Q ss_pred C----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 E----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+ +. ....+.+.+.++||++||...+.+..+...|..+++-. +.+....
T Consensus 94 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~ 173 (263)
T 3ai3_A 94 GTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTKAALMMFSKTLAT 173 (263)
T ss_dssp CCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 2 10 01123446778999999998776544444555433211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCcc-------------ce--eeecC-CcCCCcccHHHHHHHHHHHhhCCC--CCCcEE
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQ-------------GF--QFEEG-CAANGSLSKEDAAFICVEALESIP--QTGLIF 183 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~-------------~~--~~~~~-~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~ 183 (208)
.+...++++++||||++........ .. .+... .+...+.+.+|+|++++.++.++. ..|+.|
T Consensus 174 e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~ 253 (263)
T 3ai3_A 174 EVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEHAPIKRFASPEELANFFVFLCSERATYSVGSAY 253 (263)
T ss_dssp HHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHCTTCSCBCHHHHHHHHHHHTSTTCTTCCSCEE
T ss_pred HhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHcCccccCCCCcEE
Confidence 2334699999999999864311000 00 00000 122446788999999999987654 247889
Q ss_pred EEeeCC
Q 028525 184 EVVNGE 189 (208)
Q Consensus 184 ~i~~~~ 189 (208)
++.+|.
T Consensus 254 ~vdgG~ 259 (263)
T 3ai3_A 254 FVDGGM 259 (263)
T ss_dssp EESTTC
T ss_pred EECCCc
Confidence 988654
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.5e-16 Score=118.30 Aligned_cols=182 Identities=13% Similarity=0.024 Sum_probs=107.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHh--------cCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTAL--------RGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~--------~~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.+++ .++|+||+++
T Consensus 21 GasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~id~li~~A 100 (266)
T 1xq1_A 21 GGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNL 100 (266)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 3699999999999999999999999987653221 1346889999999999988887 4689999773
Q ss_pred C----Cc----------------------hhhh----hhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 E----GF----------------------ISNA----GSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~----~~----------------------~~~a----~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+ +. +.++ +++.+.++||++||..++.+..+...|...++.. +.+....
T Consensus 101 g~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~ 180 (266)
T 1xq1_A 101 GAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLAC 180 (266)
T ss_dssp CC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccCCCCCchHHHHHHHHHHHHHHHHH
Confidence 2 10 0111 2456788999999988765444444555433211 1111111
Q ss_pred HHHhcCCCEEEEeccccccCCCCcc--c-e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQ--G-F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~--~-~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.+...++++++||||++........ . + .+........+.+.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 181 e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 255 (266)
T 1xq1_A 181 EWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGGL 255 (266)
T ss_dssp HHGGGTCEEEEEECCSCC-------------------------CCGGGGHHHHHHHTSGGGTTCCSCEEECCCCE
T ss_pred HHhHhCcEEEEEeeCCCccchhhhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCcEEEEcCCc
Confidence 2233699999999999865432110 0 0 00000111235678999999999887543 347889888654
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-16 Score=119.80 Aligned_cols=182 Identities=14% Similarity=0.079 Sum_probs=120.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 21 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv~~Ag 100 (260)
T 2zat_A 21 ASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAA 100 (260)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3599999999999999999999999987653221 23468889999999999888876 7899998732
Q ss_pred -----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 75 -----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 75 -----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+.+ ...+++.+.++||++||...+.+..+...|...++-. +.+....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~ 180 (260)
T 2zat_A 101 VNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAV 180 (260)
T ss_dssp CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 110 0123456778999999998876544445555433211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCcc---ce---eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQ---GF---QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGE 189 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~---~~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~ 189 (208)
.+...+++++.|+||++........ .. .+....+...+.+.+|+|++++.++.++.. .|+.+++.+|.
T Consensus 181 e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~ 256 (260)
T 2zat_A 181 ELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDASYITGETVVVGGGT 256 (260)
T ss_dssp HHGGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHHHHHHTCSSCBCGGGGHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred HhcccCeEEEEEEECcccCccchhcccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccCCccCCEEEECCCc
Confidence 2334689999999999864332110 00 010111223467889999999999876542 57899988664
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-16 Score=119.16 Aligned_cols=187 Identities=12% Similarity=0.028 Sum_probs=119.4
Q ss_pred Cchhhhc-----cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cCCceEEEEcCCCCHHHHHHHhc-------C
Q 028525 1 MGPMKKM-----KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FGTYVESMAGDASNKKFLKTALR-------G 65 (208)
Q Consensus 1 ~~~~~~~-----~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~-------~ 65 (208)
|+.|..+ +++|.||++++++|+++|++|++++|+.++ .+. .. . .++.+|++|++++.++++ +
T Consensus 1 M~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~-~-~~~~~D~~~~~~~~~~~~~~~~~~g~ 77 (256)
T 2d1y_A 1 MGLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIG-G-AFFQVDLEDERERVRFVEEAAYALGR 77 (256)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHT-C-EEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhh-C-CEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 5556443 469999999999999999999999998765 221 12 3 788999999999888775 6
Q ss_pred CCEEEEcCC----Cc----------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH-
Q 028525 66 VRSIICPSE----GF----------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK- 114 (208)
Q Consensus 66 ~d~vi~~~~----~~----------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~- 114 (208)
+|++|++++ +. . ...+++.+.++||++||...+.+..+...|..+++-.
T Consensus 78 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~ 157 (256)
T 2d1y_A 78 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLV 157 (256)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCTTBHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCCCCChhHHHHHHHHH
Confidence 799998732 10 0 1123345678999999987665443444555433211
Q ss_pred -hHHHHHHHHHhcCCCEEEEeccccccCCCC--------ccce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCc
Q 028525 115 -LAEQDESMLMASGIPYTIIRTGVLQNTPGG--------KQGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGL 181 (208)
Q Consensus 115 -~~~~~e~~l~~~~~~~tivRp~~~~~~~~~--------~~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~ 181 (208)
+.+.....+...+++++.|+||.+...... .... .+....+...+.+.+|+|++++.++.++. ..|+
T Consensus 158 ~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~s~~~~~~~G~ 237 (256)
T 2d1y_A 158 NLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLFLASEKASFITGA 237 (256)
T ss_dssp HHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSC
T ss_pred HHHHHHHHHHhhcCeEEEEEeeCCccCchhhhccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCC
Confidence 111111223346899999999988532100 0000 01111122446788999999999987653 3578
Q ss_pred EEEEeeCCc
Q 028525 182 IFEVVNGEE 190 (208)
Q Consensus 182 ~~~i~~~~~ 190 (208)
.+++.+|..
T Consensus 238 ~~~v~gG~~ 246 (256)
T 2d1y_A 238 ILPVDGGMT 246 (256)
T ss_dssp EEEESTTGG
T ss_pred EEEECCCcc
Confidence 899886643
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=116.92 Aligned_cols=182 Identities=11% Similarity=0.011 Sum_probs=117.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEc-Cchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVK-DKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R-~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++| +.++..+. .+.++.++.+|++|++++.++++ ++|+||+++
T Consensus 14 GasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~A 93 (261)
T 1gee_A 14 GSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNA 93 (261)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 36999999999999999999999999 65442211 13468899999999999988876 789999872
Q ss_pred C----Cch--------------------------hhhhhhcC-CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 74 E----GFI--------------------------SNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 74 ~----~~~--------------------------~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
+ ... ...+.+.+ .++||++||...+.+..+...|..+++-. +.+...
T Consensus 94 g~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la 173 (261)
T 1gee_A 94 GLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLA 173 (261)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCCCCCccHHHHHHHHHHHHHHHHH
Confidence 2 100 11233445 67999999988765444444555433211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc---c-e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ---G-F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~---~-~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
..+...+++++++|||.+........ . . .+........+.+.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 174 ~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 250 (261)
T 1gee_A 174 LEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGM 250 (261)
T ss_dssp HHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHhcccCeEEEEEeeCCcCCchhhhcccChhHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCcEEEEcCCc
Confidence 22234689999999999864321110 0 0 01111122346788999999999987543 357888888654
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=117.01 Aligned_cols=180 Identities=14% Similarity=0.036 Sum_probs=117.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++... ..+.++.++.+|++|++++.++++ ++|+||++++
T Consensus 20 GasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~Ag 99 (260)
T 3awd_A 20 GGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACAG 99 (260)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 369999999999999999999999998765321 124468999999999999988875 6899998722
Q ss_pred -----Cch----------------------hh----hhhhcCCCeEEEeceeeeccCCCCc--ccccchhHHHhHH-HHH
Q 028525 75 -----GFI----------------------SN----AGSLKGVQHVILLSQLSVYRGSGGI--QALMKGNARKLAE-QDE 120 (208)
Q Consensus 75 -----~~~----------------------~~----a~~~~gv~~~v~~Ss~~~~~~~~~~--~~~~~~~~~~~~~-~~e 120 (208)
... .+ .+.+.+..+||++||...+....+. ..|...+ ...+ .++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~Y~~sK--~a~~~~~~ 177 (260)
T 3awd_A 100 ICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASK--AGVHQYIR 177 (260)
T ss_dssp CCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSSCCHHHHHHH--HHHHHHHH
T ss_pred CCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccCCCCCccccHHHH--HHHHHHHH
Confidence 110 01 1233567899999998766432222 3444422 2211 111
Q ss_pred H---HHHhcCCCEEEEeccccccCCCC-cc---ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 121 S---MLMASGIPYTIIRTGVLQNTPGG-KQ---GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 121 ~---~l~~~~~~~tivRp~~~~~~~~~-~~---~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
. .+...++++++||||.+...... .. .+ .+........+.+.+|+|++++.++.++. ..++.|++.+|.
T Consensus 178 ~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 257 (260)
T 3awd_A 178 SLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTPMGRVGQPDEVASVVQFLASDAASLMTGAIVNVDAGF 257 (260)
T ss_dssp HHHHHHGGGTEEEEEEEECCBCCTTTHHHHTCHHHHHHHHHTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHhhhcCeEEEEEEeeeeccchhhcccCChHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCchhccCCCcEEEECCce
Confidence 1 12236899999999998654322 10 00 01111122456789999999999987543 357889988653
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.4e-16 Score=119.51 Aligned_cols=180 Identities=11% Similarity=0.020 Sum_probs=118.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE---- 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~---- 74 (208)
++|.||++++++|+++|++|++++|+.++..+ ....++.++.+|++|++++.++++ ++|++|++++
T Consensus 20 as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~ 99 (263)
T 3ak4_A 20 GSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTM 99 (263)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECCCCCCC
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCC
Confidence 59999999999999999999999999766432 222368899999999999998887 7899998732
Q ss_pred Cch--------------------------hhhhhhcC-CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 75 GFI--------------------------SNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 75 ~~~--------------------------~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
+.+ ...+.+.+ ..+||++||...+.+..+...|..+++-. +.+.....+..
T Consensus 100 ~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~ 179 (263)
T 3ak4_A 100 RPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAP 179 (263)
T ss_dssp CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCchhHHHHHHHHHHHHHHHHHHHhH
Confidence 110 01123345 67999999988765443444555433211 11111122334
Q ss_pred cCCCEEEEeccccccCCCCc-------------cce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 126 SGIPYTIIRTGVLQNTPGGK-------------QGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~-------------~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.++++++||||++....... ... .+....+...+.+.+|+|++++.++.++. ..|+.+++.+|
T Consensus 180 ~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG 259 (263)
T 3ak4_A 180 KNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLTPLGRIEEPEDVADVVVFLASDAARFMTGQGINVTGG 259 (263)
T ss_dssp GTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred cCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECcC
Confidence 69999999999985432100 000 01111122446788999999999987653 35788998865
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-16 Score=118.46 Aligned_cols=188 Identities=13% Similarity=0.089 Sum_probs=120.2
Q ss_pred Cchhhhc-----cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc-CCceEEEEcCCCCHHHHHHHh---cCCCEEEE
Q 028525 1 MGPMKKM-----KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF-GTYVESMAGDASNKKFLKTAL---RGVRSIIC 71 (208)
Q Consensus 1 ~~~~~~~-----~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~---~~~d~vi~ 71 (208)
|+.|+++ +++|.||++++++|+++|++|++++|++++..+.. -.++.++.+|++|++++.+++ .++|++|+
T Consensus 1 m~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~ 80 (246)
T 2ag5_A 1 MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFN 80 (246)
T ss_dssp CCTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEE
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhccCceEEEeeCCCHHHHHHHHHHhCCCCEEEE
Confidence 5666543 36999999999999999999999999987654322 126889999999999988775 36899998
Q ss_pred cCC----Cch----------------------h----hhhhhcCCCeEEEeceeeeccCCC-CcccccchhHHH--hHHH
Q 028525 72 PSE----GFI----------------------S----NAGSLKGVQHVILLSQLSVYRGSG-GIQALMKGNARK--LAEQ 118 (208)
Q Consensus 72 ~~~----~~~----------------------~----~a~~~~gv~~~v~~Ss~~~~~~~~-~~~~~~~~~~~~--~~~~ 118 (208)
+++ +.+ . ..+.+.+.++||++||...+.... +...|..++.-. +.+.
T Consensus 81 ~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~~sK~a~~~~~~~ 160 (246)
T 2ag5_A 81 VAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKS 160 (246)
T ss_dssp CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCTTBHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCCCCCCccHHHHHHHHHHHHHH
Confidence 732 110 0 113345778999999987665332 334454432211 1111
Q ss_pred HHHHHHhcCCCEEEEeccccccCCCCc--------cce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEe
Q 028525 119 DESMLMASGIPYTIIRTGVLQNTPGGK--------QGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVV 186 (208)
Q Consensus 119 ~e~~l~~~~~~~tivRp~~~~~~~~~~--------~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~ 186 (208)
....+...++++++||||++....... ... .+........+.+.+|+|++++.++.++. ..|+.+.+.
T Consensus 161 la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~i~vd 240 (246)
T 2ag5_A 161 VAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAEEIAMLCVYLASDESAYVTGNPVIID 240 (246)
T ss_dssp HHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTSSCEEHHHHHHHHHHHHSGGGTTCCSCEEEEC
T ss_pred HHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEEC
Confidence 111223469999999999986432110 000 01011122346788999999999987543 347888887
Q ss_pred eC
Q 028525 187 NG 188 (208)
Q Consensus 187 ~~ 188 (208)
+|
T Consensus 241 gG 242 (246)
T 2ag5_A 241 GG 242 (246)
T ss_dssp TT
T ss_pred CC
Confidence 55
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-15 Score=115.95 Aligned_cols=182 Identities=11% Similarity=-0.012 Sum_probs=120.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 12 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv~nAg~~~ 91 (254)
T 1hdc_A 12 GGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGIST 91 (254)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 469999999999999999999999999766432 123468889999999999988886 7899998732
Q ss_pred -Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 75 -GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 75 -~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
+. ....+++.+.++||++||...+.+..+...|..+++-. +.+.....+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~ 171 (254)
T 1hdc_A 92 GMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGT 171 (254)
T ss_dssp CSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCCchhHHHHHHHHHHHHHHHHHHhhh
Confidence 10 01234456778999999988775444444555433211 11111122334
Q ss_pred cCCCEEEEeccccccCCCCc--cce--eeecCCcCCCcc-cHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 126 SGIPYTIIRTGVLQNTPGGK--QGF--QFEEGCAANGSL-SKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~--~~~--~~~~~~~~~~~v-~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.+++++.||||++....... ... .+........+. +.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 172 ~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 242 (254)
T 1hdc_A 172 DRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGGW 242 (254)
T ss_dssp GTEEEEEEEECSBCCHHHHHHTCCCSTTSCTTSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred cCeEEEEEecccCcCccccccchhHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCchhcCCCCCEEEECCCc
Confidence 68999999999985421100 000 010111123456 89999999999987653 357888888664
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-16 Score=120.84 Aligned_cols=199 Identities=14% Similarity=0.114 Sum_probs=132.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----h--cCC---ceEEEEcCCCCHHHHHHHhc-------CCCEEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----S--FGT---YVESMAGDASNKKFLKTALR-------GVRSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~--~~~---~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~ 71 (208)
+++|.||++++++|+++|++|++++|+.++..+ . .+. .+.++.+|++|++++.++++ +.|++|+
T Consensus 18 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~ 97 (281)
T 3svt_A 18 GGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWHGRLHGVVH 97 (281)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 358999999999999999999999999765321 1 112 68899999999999888875 5799998
Q ss_pred cCCC-----ch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHH
Q 028525 72 PSEG-----FI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQ 118 (208)
Q Consensus 72 ~~~~-----~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~ 118 (208)
+++. .+ ...+.+.+-.+||++||...+.+..+...|..+++-. +.+.
T Consensus 98 nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~l~~~ 177 (281)
T 3svt_A 98 CAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQL 177 (281)
T ss_dssp CCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCTTCTHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCCCCChhHHHHHHHHHHHHHH
Confidence 7331 10 0113334556999999998776555555665533211 1111
Q ss_pred HHHHHHhcCCCEEEEeccccccCCCCc----cce--eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCCc
Q 028525 119 DESMLMASGIPYTIIRTGVLQNTPGGK----QGF--QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGEE 190 (208)
Q Consensus 119 ~e~~l~~~~~~~tivRp~~~~~~~~~~----~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~~ 190 (208)
.-..+...++++..|+||++....... ... .+........+.+.+|+|++++.++.++.. .|+.+++.+|..
T Consensus 178 la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG~~ 257 (281)
T 3svt_A 178 AADELGASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCTPLPRQGEVEDVANMAMFLLSDAASFVTGQVINVDGGQM 257 (281)
T ss_dssp HHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHHCSSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHhhhcCeEEEEEEeCcCcCcchhhcccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcccCCCCCCEEEeCCChh
Confidence 111233468999999999985432110 000 011111224456789999999998876543 589999987664
Q ss_pred -c-hhhHHHHHHHHhhhc
Q 028525 191 -K-VSDWKKCFSRLMEKT 206 (208)
Q Consensus 191 -~-~~e~~~~~~~~~~~~ 206 (208)
. ..++.+.+.+.++.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~ 275 (281)
T 3svt_A 258 LRRGPDFSAMLEPVFGRD 275 (281)
T ss_dssp GSCCCCCHHHHHHHHCTT
T ss_pred cccCCcchhccccccCCc
Confidence 3 778999998888764
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=115.08 Aligned_cols=179 Identities=13% Similarity=0.048 Sum_probs=118.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc--CCceEEEEcCCCCHHHHHHHhc---CCCEEEEcCC----Cch-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF--GTYVESMAGDASNKKFLKTALR---GVRSIICPSE----GFI- 77 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~---~~d~vi~~~~----~~~- 77 (208)
+++|.||++++++|+++|++|++++|+.++..+.. ..+++++.+|++|++++.++++ ++|+||++++ ...
T Consensus 14 GasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~ 93 (244)
T 3d3w_A 14 GAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNAAVALLQPFL 93 (244)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECCCCCCCBCGG
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEECCccCCCcchh
Confidence 46999999999999999999999999977643221 1257888999999999999986 4799998732 100
Q ss_pred ---------------------h----hhhhhcC-CCeEEEeceeeeccCCCCcccccchhHHHhHHH-HHH---HHHhcC
Q 028525 78 ---------------------S----NAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-DES---MLMASG 127 (208)
Q Consensus 78 ---------------------~----~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~e~---~l~~~~ 127 (208)
. ..+.+.+ .++||++||...+.+..+...|..++ ...+. ++. .+...+
T Consensus 94 ~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK--~a~~~~~~~la~e~~~~~ 171 (244)
T 3d3w_A 94 EVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTK--GALDMLTKVMALELGPHK 171 (244)
T ss_dssp GCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHH--HHHHHHHHHHHHHHGGGT
T ss_pred hCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCCCCCchHHHHH--HHHHHHHHHHHHHhcccC
Confidence 1 1122345 67999999988776544445555433 22111 111 122368
Q ss_pred CCEEEEeccccccCCCCc----cce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 128 IPYTIIRTGVLQNTPGGK----QGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 128 ~~~tivRp~~~~~~~~~~----~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
++++++|||.+....... ... .+....+...+++.+|+|++++.++.++. ..|+.|++.+|
T Consensus 172 i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 240 (244)
T 3d3w_A 172 IRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240 (244)
T ss_dssp EEEEEEEECCBTTTTHHHHSCSTTHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred eEEEEEEeccccccchhhhccChHHHHHHHhhCCCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 999999999986532110 000 01111223456789999999999997643 35788998765
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-15 Score=115.75 Aligned_cols=181 Identities=13% Similarity=0.123 Sum_probs=118.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEc-Cchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVK-DKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R-~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++| +.++..+ ..+.++.++.+|++|++++.++++ ++|++|+++
T Consensus 11 Gas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~nA 90 (246)
T 2uvd_A 11 GASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNA 90 (246)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 46999999999999999999999999 6554321 123468899999999999988886 689999873
Q ss_pred C----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 E----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+ +. ....+++.+.++||++||...+.+..+...|..++.-. +.+....
T Consensus 91 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~ 170 (246)
T 2uvd_A 91 GVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAK 170 (246)
T ss_dssp CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTBHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 2 11 01123446778999999987654433344555433211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCcc--ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQ--GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~--~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+...+++++.|+||++........ .. .+........+.+.+|+|++++.++.++. ..|+.+++.+|
T Consensus 171 e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 243 (246)
T 2uvd_A 171 ELASRNITVNAIAPGFIATDMTDVLDENIKAEMLKLIPAAQFGEAQDIANAVTFFASDQSKYITGQTLNVDGG 243 (246)
T ss_dssp HHGGGTEEEEEEEECSBGGGCSSCCCTTHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HhhhcCeEEEEEEeccccCcchhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCCCCCEEEECcC
Confidence 2345799999999999864322110 00 01011122346788999999999986543 24788888755
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-16 Score=119.49 Aligned_cols=181 Identities=14% Similarity=0.039 Sum_probs=118.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-h-hhh--cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-A-MES--FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE-- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~-~~~--~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~-- 74 (208)
+++|.||++++++|+++|++|++++|+.+. . .+. .+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 11 Gas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag~~ 90 (255)
T 2q2v_A 11 GSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGVDILVNNAGIQ 90 (255)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSCSEEEECCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 469999999999999999999999998753 1 111 13468889999999999999887 7999998732
Q ss_pred --Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHH
Q 028525 75 --GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLM 124 (208)
Q Consensus 75 --~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~ 124 (208)
+. ....+++.+.++||++||...+.+..+...|...+.-. +.+.....+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~ 170 (255)
T 2q2v_A 91 HVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETA 170 (255)
T ss_dssp CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 11 01224456778999999988775444444554433211 1111111122
Q ss_pred hcCCCEEEEeccccccCCCCcc-----ce---------ee-ecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEee
Q 028525 125 ASGIPYTIIRTGVLQNTPGGKQ-----GF---------QF-EEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVN 187 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~~-----~~---------~~-~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~ 187 (208)
..+++++.|+||.+........ .. .+ ....+...+.+.+|+|++++.++.++. ..|+.|++.+
T Consensus 171 ~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdg 250 (255)
T 2q2v_A 171 TSNVTCNAICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEKQPSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDG 250 (255)
T ss_dssp TSSEEEEEEEESSBCCHHHHHHHHHHHHHTCCHHHHHHHHHTTTCTTCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ccCcEEEEEeeCCCcCcchhhhcccccccccchHHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECC
Confidence 3689999999999854321100 00 01 111222456788999999999887654 2478898875
Q ss_pred C
Q 028525 188 G 188 (208)
Q Consensus 188 ~ 188 (208)
|
T Consensus 251 G 251 (255)
T 2q2v_A 251 G 251 (255)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-16 Score=115.36 Aligned_cols=160 Identities=14% Similarity=0.051 Sum_probs=109.0
Q ss_pred chhhhc--cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC---CCEEEEcCC--
Q 028525 2 GPMKKM--KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG---VRSIICPSE-- 74 (208)
Q Consensus 2 ~~~~~~--~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~---~d~vi~~~~-- 74 (208)
|||+.. +++|+||++++++|+ +|++|++++|+.+ .+.+|++|++++.+++++ +|+||++++
T Consensus 2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-----------~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag~~ 69 (202)
T 3d7l_A 2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-----------DVTVDITNIDSIKKMYEQVGKVDAIVSATGSA 69 (202)
T ss_dssp CSCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-----------SEECCTTCHHHHHHHHHHHCCEEEEEECCCCC
T ss_pred CCcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-----------ceeeecCCHHHHHHHHHHhCCCCEEEECCCCC
Confidence 566543 579999999999999 9999999999864 468999999999998875 799998732
Q ss_pred --Cc----------------------hhhhhhhc---CCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHH---
Q 028525 75 --GF----------------------ISNAGSLK---GVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLM--- 124 (208)
Q Consensus 75 --~~----------------------~~~a~~~~---gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~--- 124 (208)
+. +.+++... + ++||++||...+.+..+...|... |. ..|.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~~~~~~~Y~~s--K~---~~~~~~~~~~ 143 (202)
T 3d7l_A 70 TFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK-GSFTLTTGIMMEDPIVQGASAAMA--NG---AVTAFAKSAA 143 (202)
T ss_dssp CCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE-EEEEEECCGGGTSCCTTCHHHHHH--HH---HHHHHHHHHT
T ss_pred CCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC-CEEEEEcchhhcCCCCccHHHHHH--HH---HHHHHHHHHH
Confidence 11 01112222 3 689999998776544333444432 22 2233333
Q ss_pred ---hcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEE
Q 028525 125 ---ASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEV 185 (208)
Q Consensus 125 ---~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i 185 (208)
..+++++++|||.+...... +........+++.+|+|++++.++. ....|+.|++
T Consensus 144 ~e~~~gi~v~~v~pg~v~~~~~~-----~~~~~~~~~~~~~~dva~~~~~~~~-~~~~G~~~~v 201 (202)
T 3d7l_A 144 IEMPRGIRINTVSPNVLEESWDK-----LEPFFEGFLPVPAAKVARAFEKSVF-GAQTGESYQV 201 (202)
T ss_dssp TSCSTTCEEEEEEECCBGGGHHH-----HGGGSTTCCCBCHHHHHHHHHHHHH-SCCCSCEEEE
T ss_pred HHccCCeEEEEEecCccCCchhh-----hhhhccccCCCCHHHHHHHHHHhhh-ccccCceEec
Confidence 24899999999998653211 1112233567899999999998884 3445778876
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=8e-16 Score=117.94 Aligned_cols=182 Identities=19% Similarity=0.142 Sum_probs=115.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---c---C-------CceEEEEcCCCCHHHHHHHhcCC--------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---F---G-------TYVESMAGDASNKKFLKTALRGV-------- 66 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~---~-------~~v~~v~~Dl~d~~~l~~~~~~~-------- 66 (208)
+++|.||++++++|+++|++|++++|+.++..+. . + .++.++.+|++|++++.++++.+
T Consensus 14 GasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i~ 93 (264)
T 2pd6_A 14 GAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQVQACFSRPP 93 (264)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHHHHHHHSSCC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 4699999999999999999999999997663221 1 1 45889999999999998887653
Q ss_pred CEEEEcCC----Cc----------------------hh----hhhhhcC-CCeEEEeceeeeccCCCCcccccchhHHH-
Q 028525 67 RSIICPSE----GF----------------------IS----NAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK- 114 (208)
Q Consensus 67 d~vi~~~~----~~----------------------~~----~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~- 114 (208)
|+||++++ +. +. ..+.+.+ .++||++||...+.+..+...|..++...
T Consensus 94 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~ 173 (264)
T 2pd6_A 94 SVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVI 173 (264)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCCTTBHHHHHHHHHHH
T ss_pred eEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCCCCChhhHHHHHHHH
Confidence 99998732 10 00 1123345 57999999986654443444554433211
Q ss_pred -hHHHHHHHHHhcCCCEEEEeccccccCCCCcc--cee--eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEee
Q 028525 115 -LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQ--GFQ--FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVN 187 (208)
Q Consensus 115 -~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~--~~~--~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~ 187 (208)
+.+.....+...+++++++|||++........ ... +........+.+.+|+|++++.++.++. ..|+.+++.+
T Consensus 174 ~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~g 253 (264)
T 2pd6_A 174 GLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEMIPMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTG 253 (264)
T ss_dssp HHHHHHHHHHGGGTEEEEEEEECSBCSCC----------CTGGGCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred HHHHHHHHHhhhcCeEEEEEeeecccccchhhcCHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECC
Confidence 11111122334799999999999865432110 000 0011112345688999999999987543 3578888886
Q ss_pred CC
Q 028525 188 GE 189 (208)
Q Consensus 188 ~~ 189 (208)
|.
T Consensus 254 g~ 255 (264)
T 2pd6_A 254 GL 255 (264)
T ss_dssp TC
T ss_pred Cc
Confidence 54
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.9e-16 Score=116.56 Aligned_cols=181 Identities=12% Similarity=0.097 Sum_probs=111.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEE-EcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKAL-VKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~-~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|+++ .|++++... ..+.++.++.+|++|++++.++++ ++|+||+++
T Consensus 12 GasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~A 91 (247)
T 2hq1_A 12 GSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGRIDILVNNA 91 (247)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 469999999999999999999999 566544221 124468999999999999988886 789999872
Q ss_pred C----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 E----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+ +. ....+.+.+.++||++||.....+..+..+|...+... +.+....
T Consensus 92 g~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~ 171 (247)
T 2hq1_A 92 GITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAK 171 (247)
T ss_dssp ---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC---------CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCCCCcHhHHHHHHHHHHHHHHHH
Confidence 2 00 01123346778999999985543333334454432211 1111111
Q ss_pred HHHhcCCCEEEEeccccccCCCCc--cce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGK--QGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~--~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+...++++++++||++....... ... .+........+.+.+|+|++++.++.++. ..++.|++.+|
T Consensus 172 e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 244 (247)
T 2hq1_A 172 EFAAKGIYCNAVAPGIIKTDMTDVLPDKVKEMYLNNIPLKRFGTPEEVANVVGFLASDDSNYITGQVINIDGG 244 (247)
T ss_dssp HHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHcCcEEEEEEEEEEeccchhhcchHHHHHHHhhCCCCCCCCHHHHHHHHHHHcCcccccccCcEEEeCCC
Confidence 233468999999999875321100 000 01111222456789999999999887543 35789999765
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-15 Score=113.53 Aligned_cols=181 Identities=13% Similarity=0.004 Sum_probs=116.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCc-hhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDK-RNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE-- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~-~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~-- 74 (208)
+++|.||++++++|+++|++|++++|++ ++..+ ..+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 14 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 93 (249)
T 2ew8_A 14 GGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIY 93 (249)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4699999999999999999999999988 55322 124568899999999999888763 6899998732
Q ss_pred --Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHH
Q 028525 75 --GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLM 124 (208)
Q Consensus 75 --~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~ 124 (208)
+. ....+++.+.++||++||...+.+..+...|..+++-. +.+.....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~ 173 (249)
T 2ew8_A 94 PLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLG 173 (249)
T ss_dssp CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCSSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 11 01124456778999999998776544445555433211 1111112233
Q ss_pred hcCCCEEEEeccccccCCCC-ccc-e--eeecC--CcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 125 ASGIPYTIIRTGVLQNTPGG-KQG-F--QFEEG--CAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~-~~~-~--~~~~~--~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..+++++.|+||++...... ... . ..... .....+.+.+|+|++++.++.++. ..|+.+++.+|
T Consensus 174 ~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdGG 245 (249)
T 2ew8_A 174 KDGITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVPLDLTGAAAFLASDDASFITGQTLAVDGG 245 (249)
T ss_dssp GGTEEEEEEEECCC------------------CTTSSSCSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSS
T ss_pred hcCcEEEEEecCcCcCccchhccccchhhHHHHhhCccCCCCCHHHHHHHHHHHcCcccCCCCCcEEEECCC
Confidence 46899999999998643321 100 0 00000 112345678999999999987543 35788888755
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-15 Score=115.54 Aligned_cols=177 Identities=13% Similarity=0.078 Sum_probs=117.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----Cc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE----GF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----~~ 76 (208)
+++|.||++++++|+++|++|++++|+.++... ..+.++.+|++|++++.++++ ++|++|++++ ..
T Consensus 35 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~ 111 (260)
T 3un1_A 35 GASQGIGAGLVRAYRDRNYRVVATSRSIKPSAD---PDIHTVAGDISKPETADRIVREGIERFGRIDSLVNNAGVFLAKP 111 (260)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESSCCCCSS---TTEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc---CceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC
Confidence 358999999999999999999999998765432 368999999999999998886 7899998732 11
Q ss_pred ----------------------hhh----hhhhcCCCeEEEeceeeeccCC--CCcccccchhHHHhHH-HHHHH---HH
Q 028525 77 ----------------------ISN----AGSLKGVQHVILLSQLSVYRGS--GGIQALMKGNARKLAE-QDESM---LM 124 (208)
Q Consensus 77 ----------------------~~~----a~~~~gv~~~v~~Ss~~~~~~~--~~~~~~~~~~~~~~~~-~~e~~---l~ 124 (208)
..+ .+.+.+..+||++||...+.+. .+...|..+ |...+ .++.+ +.
T Consensus 112 ~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~s--Kaa~~~l~~~la~e~~ 189 (260)
T 3un1_A 112 FVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALASLT--KGGLNAVTRSLAMEFS 189 (260)
T ss_dssp GGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCBTTCCCHHHHHH--HHHHHHHHHHHHHHTT
T ss_pred hhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCCCCCccHHHHHH--HHHHHHHHHHHHHHhC
Confidence 011 1345677899999998765422 222334332 22111 11111 22
Q ss_pred hcCCCEEEEeccccccCCCCccce-eeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC
Q 028525 125 ASGIPYTIIRTGVLQNTPGGKQGF-QFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE 189 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~ 189 (208)
..+++++.|+||++.......... .+....+...+.+.+|+|++++.+.+.+...|+.+++.+|.
T Consensus 190 ~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~p~~r~~~~~dva~av~~L~~~~~itG~~i~vdGG~ 255 (260)
T 3un1_A 190 RSGVRVNAVSPGVIKTPMHPAETHSTLAGLHPVGRMGEIRDVVDAVLYLEHAGFITGEILHVDGGQ 255 (260)
T ss_dssp TTTEEEEEEEECCBCCTTSCGGGHHHHHTTSTTSSCBCHHHHHHHHHHHHHCTTCCSCEEEESTTG
T ss_pred cCCeEEEEEeecCCCCCCCCHHHHHHHhccCCCCCCcCHHHHHHHHHHhcccCCCCCcEEEECCCe
Confidence 358999999999986543222111 11122233456678999999998855444568999998654
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-15 Score=114.19 Aligned_cols=181 Identities=14% Similarity=0.055 Sum_probs=116.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc-CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF-GTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG---- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~---- 75 (208)
+++|.||++++++|+++|++|++++|+.++..+.. ..++.++.+|++|++++.++++ ++|++|++++.
T Consensus 34 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~ 113 (260)
T 3gem_A 34 GASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAE 113 (260)
T ss_dssp STTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEEEECCCCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCccCCC
Confidence 35899999999999999999999999987642221 2258899999999999988875 57999987321
Q ss_pred c-------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHh--cCC
Q 028525 76 F-------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMA--SGI 128 (208)
Q Consensus 76 ~-------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~--~~~ 128 (208)
. ....+.+.+..+||++||...+.+..+...|..+++-... .++.+-.+ .++
T Consensus 114 ~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~-l~~~la~e~~~~I 192 (260)
T 3gem_A 114 TPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAGLES-LTLSFAARFAPLV 192 (260)
T ss_dssp CTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCCSSCHHHHHHHHHHHH-HHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCCCcHhHHHHHHHHHH-HHHHHHHHHCCCC
Confidence 0 0112344566799999998877655445556553321110 11111111 269
Q ss_pred CEEEEeccccccCCCCccce--eeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC
Q 028525 129 PYTIIRTGVLQNTPGGKQGF--QFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE 189 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~~~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~ 189 (208)
+++.|+||++.......... .+..........+.+|+|++++.+++.+...|+.+++.+|.
T Consensus 193 rvn~v~PG~v~t~~~~~~~~~~~~~~~~p~~r~~~~edva~~v~~L~~~~~itG~~i~vdGG~ 255 (260)
T 3gem_A 193 KVNGIAPALLMFQPKDDAAYRANALAKSALGIEPGAEVIYQSLRYLLDSTYVTGTTLTVNGGR 255 (260)
T ss_dssp EEEEEEECTTCC---------------CCSCCCCCTHHHHHHHHHHHHCSSCCSCEEEESTTT
T ss_pred EEEEEeecccccCCCCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhhCCCCCCCEEEECCCc
Confidence 99999999985432211111 01111112334467999999999986555678999988654
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.6e-16 Score=118.29 Aligned_cols=180 Identities=12% Similarity=0.121 Sum_probs=117.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcC-chhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKD-KRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~-~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|+ +++.... .+.++.++.+|++|++++.++++ ++|+||+++
T Consensus 14 GasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~vi~~A 93 (258)
T 3afn_B 14 GSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGGIDVLINNA 93 (258)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSSCSEEEECC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 469999999999999999999999998 5543211 14468999999999999999887 799999873
Q ss_pred CC-----ch--------------------------hhhhhhcC--C---CeEEEeceeeecc-CCCCcccccchhHHHhH
Q 028525 74 EG-----FI--------------------------SNAGSLKG--V---QHVILLSQLSVYR-GSGGIQALMKGNARKLA 116 (208)
Q Consensus 74 ~~-----~~--------------------------~~a~~~~g--v---~~~v~~Ss~~~~~-~~~~~~~~~~~~~~~~~ 116 (208)
+. .. ...+.+.+ . .+||++||...+. +..+...|..++ ...
T Consensus 94 g~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~Y~~sK--~a~ 171 (258)
T 3afn_B 94 GGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAK--AFL 171 (258)
T ss_dssp CCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCCCTTCHHHHHHH--HHH
T ss_pred CCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCCCCCchHHHHHH--HHH
Confidence 21 00 00122222 2 6899999987664 333344555433 221
Q ss_pred HH-HHH---HHHhcCCCEEEEeccccccCCCCcc--ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC---CCCcEEEE
Q 028525 117 EQ-DES---MLMASGIPYTIIRTGVLQNTPGGKQ--GF--QFEEGCAANGSLSKEDAAFICVEALESIP---QTGLIFEV 185 (208)
Q Consensus 117 ~~-~e~---~l~~~~~~~tivRp~~~~~~~~~~~--~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~---~~~~~~~i 185 (208)
+. ++. .+...+++++++|||.+........ .+ .+........+++.+|+|++++.++.++. ..++.|++
T Consensus 172 ~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v 251 (258)
T 3afn_B 172 HNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADKTQDVRDRISNGIPMGRFGTAEEMAPAFLFFASHLASGYITGQVLDI 251 (258)
T ss_dssp HHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTCCHHHHHHHHTTCTTCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHhhcccCeEEEEEeCCCcccccccccCHHHHHHHhccCCCCcCCCHHHHHHHHHHHhCcchhccccCCEEeE
Confidence 11 111 1223589999999999865322110 00 01111222456789999999999987543 25788998
Q ss_pred eeCC
Q 028525 186 VNGE 189 (208)
Q Consensus 186 ~~~~ 189 (208)
.+|.
T Consensus 252 ~gg~ 255 (258)
T 3afn_B 252 NGGQ 255 (258)
T ss_dssp STTS
T ss_pred CCCc
Confidence 8654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-16 Score=121.32 Aligned_cols=188 Identities=12% Similarity=0.064 Sum_probs=122.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----hc----CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----SF----GTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~~----~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++++|+.++..+ .. +.++.++.+|++|++++.++++ ++|++|++
T Consensus 14 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~ 93 (267)
T 2gdz_A 14 GAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNN 93 (267)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 469999999999999999999999998765321 11 2358899999999999988875 46999987
Q ss_pred CCC----c------------------hhhhhhhcC---CCeEEEeceeeeccCCCCcccccchhHHH--hHHH--HHHHH
Q 028525 73 SEG----F------------------ISNAGSLKG---VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQ--DESML 123 (208)
Q Consensus 73 ~~~----~------------------~~~a~~~~g---v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~--~e~~l 123 (208)
++. . ....+.+.+ .++||++||...+.+..+...|..+++-. +.+. .+..+
T Consensus 94 Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~~ala~e~ 173 (267)
T 2gdz_A 94 AGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANL 173 (267)
T ss_dssp CCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 321 1 012233332 57999999998776444444555433211 1111 12234
Q ss_pred HhcCCCEEEEeccccccCCCCcc--ceeee----------cCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCc-
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQ--GFQFE----------EGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEE- 190 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~--~~~~~----------~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~- 190 (208)
...+++++.|+||++........ ..... .+....++++.+|+|++++.++.++...|+++++.++..
T Consensus 174 ~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s~~~~~G~~~~v~gg~~~ 253 (267)
T 2gdz_A 174 MNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGI 253 (267)
T ss_dssp HTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHHHHCCBCHHHHHHHHHHHHHCTTCSSCEEEEETTTEE
T ss_pred ccCCcEEEEEecCcCcchhhhccccccccchhhhHHHHHHHHhccccCCCHHHHHHHHHHHhcCcCCCCcEEEecCCCcc
Confidence 45799999999998853211000 00000 000112356889999999999987766789999987653
Q ss_pred chhhH
Q 028525 191 KVSDW 195 (208)
Q Consensus 191 ~~~e~ 195 (208)
++.|+
T Consensus 254 ~~~~~ 258 (267)
T 2gdz_A 254 HFQDY 258 (267)
T ss_dssp EECCC
T ss_pred cccCc
Confidence 55554
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.6e-16 Score=116.74 Aligned_cols=183 Identities=11% Similarity=0.095 Sum_probs=117.5
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEE-EcCchhhhhh------cCCceEE-EEcCCCCHHHHHHHhc-------CCCEEEE
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKAL-VKDKRNAMES------FGTYVES-MAGDASNKKFLKTALR-------GVRSIIC 71 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~-~R~~~~~~~~------~~~~v~~-v~~Dl~d~~~l~~~~~-------~~d~vi~ 71 (208)
-+++|.||++++++|+++|++|+++ .|+.++..+. .+.++.. +.+|++|.+++.++++ ++|+||+
T Consensus 7 TGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~ 86 (245)
T 2ph3_A 7 TGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGGLDTLVN 86 (245)
T ss_dssp TTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3579999999999999999999998 7876653221 1335666 8999999999888864 7899998
Q ss_pred cCC----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHH
Q 028525 72 PSE----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 72 ~~~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~ 119 (208)
+++ +. ....+++.+.++||++||...+.+..+...|...+... +.+..
T Consensus 87 ~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~l 166 (245)
T 2ph3_A 87 NAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNPGQANYVASKAGLIGFTRAV 166 (245)
T ss_dssp CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCSSBHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCCCCCcchHHHHHHHHHHHHHH
Confidence 732 10 01224456788999999986554333344454432211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCc--cce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGK--QGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~--~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
...+...+++++++|||++....... ... .+........+++.+|+|++++.++.++. ..|+.|++.+|.
T Consensus 167 a~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 242 (245)
T 2ph3_A 167 AKEYAQRGITVNAVAPGFIETEMTERLPQEVKEAYLKQIPAGRFGRPEEVAEAVAFLVSEKAGYITGQTLCVDGGL 242 (245)
T ss_dssp HHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred HHHHHHcCeEEEEEEEEeecCcchhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcccccccCCEEEECCCC
Confidence 12233458999999999985421110 000 01111122456789999999999987653 247889988654
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=115.61 Aligned_cols=181 Identities=14% Similarity=0.066 Sum_probs=117.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 9 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg 88 (256)
T 1geg_A 9 GAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAG 88 (256)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 5799999999999999999999999987653221 13468899999999999998886 7899998732
Q ss_pred ----Cch--------------------------hhhhhhcC-CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 75 ----GFI--------------------------SNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 75 ----~~~--------------------------~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+.+ ...+.+.+ ..+||++||...+.+..+...|..++.-. +.+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~ 168 (256)
T 1geg_A 89 VAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAAR 168 (256)
T ss_dssp CCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 110 11233445 67999999987665443344555433211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCc-------------cc--eeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEE
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGK-------------QG--FQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFE 184 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~-------------~~--~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~ 184 (208)
.+...+++++.|+||++....... .. ..+....+...+.+.+|+|++++.++.++. ..|+.+.
T Consensus 169 e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~ 248 (256)
T 1geg_A 169 DLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVAACVSYLASPDSDYMTGQSLL 248 (256)
T ss_dssp HHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEE
T ss_pred HHHHcCeEEEEEEECCCccchhhhhhhhccccccCChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEE
Confidence 233468999999999985421100 00 001111122346788999999999987553 3578888
Q ss_pred EeeC
Q 028525 185 VVNG 188 (208)
Q Consensus 185 i~~~ 188 (208)
+.+|
T Consensus 249 vdGG 252 (256)
T 1geg_A 249 IDGG 252 (256)
T ss_dssp ESSS
T ss_pred eCCC
Confidence 8755
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-15 Score=114.73 Aligned_cols=182 Identities=11% Similarity=0.052 Sum_probs=119.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------c--CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------F--GTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~--~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++++|+.++..+. . +.++.++.+|++|++++.++++ ++|++|++
T Consensus 20 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~n 99 (267)
T 1iy8_A 20 GGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNN 99 (267)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3699999999999999999999999997653221 1 4568899999999999988876 68999987
Q ss_pred CC-----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHH
Q 028525 73 SE-----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 73 ~~-----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~ 119 (208)
++ +.+ ...+++.+.++||++||...+.+..+...|..+++-. +.+..
T Consensus 100 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~l 179 (267)
T 1iy8_A 100 AGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNS 179 (267)
T ss_dssp CCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCSSBHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccCCCCCccHHHHHHHHHHHHHHH
Confidence 22 110 1224456778999999988765444444555433211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCc------cce------eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEE
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGK------QGF------QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEV 185 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~------~~~------~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i 185 (208)
...+...+++++.|+||++....... ... .+........+.+.+|+|++++.++.++. ..|+.+++
T Consensus 180 a~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~v 259 (267)
T 1iy8_A 180 AVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFLLSDDASYVNATVVPI 259 (267)
T ss_dssp HHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEE
T ss_pred HHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccCCCCCCcCHHHHHHHHHHHcCccccCCCCCEEEE
Confidence 12233469999999999885421100 000 01111122345688999999999987553 35788888
Q ss_pred eeCC
Q 028525 186 VNGE 189 (208)
Q Consensus 186 ~~~~ 189 (208)
.+|.
T Consensus 260 dGG~ 263 (267)
T 1iy8_A 260 DGGQ 263 (267)
T ss_dssp STTT
T ss_pred CCCc
Confidence 7553
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=115.45 Aligned_cols=181 Identities=11% Similarity=0.004 Sum_probs=118.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++ .+|++|++++
T Consensus 13 Gas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~ 92 (253)
T 1hxh_A 13 GGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILL 92 (253)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEEEECCCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 469999999999999999999999998766432 224568899999999999888775 3699998732
Q ss_pred -Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 75 -GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 75 -~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
+. ....+++.+ ++||++||...+.+..+...|..+++.. +.+.....+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~ 171 (253)
T 1hxh_A 93 PGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRK 171 (253)
T ss_dssp CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcCCCCCCccHHHHHHHHHHHHHHHHHHhhh
Confidence 10 011244456 8999999998776544444555433211 11111122333
Q ss_pred c--CCCEEEEeccccccCCCCc---cce--e-eec---CCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 126 S--GIPYTIIRTGVLQNTPGGK---QGF--Q-FEE---GCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 126 ~--~~~~tivRp~~~~~~~~~~---~~~--~-~~~---~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
. ++++++||||++....... ... . +.. ......+.+.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 172 ~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 248 (253)
T 1hxh_A 172 QGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVLFLASDESSVMSGSELHADNSI 248 (253)
T ss_dssp HTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHBCBTTTBTTCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSSC
T ss_pred cCCCeEEEEEEeCCccCchhhhccchhhhHHHHhhhhccCccCCCCCHHHHHHHHHHHcCccccCCCCcEEEECCCc
Confidence 4 8999999999986421100 000 0 111 1112345688999999999987653 347888887653
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.8e-15 Score=113.65 Aligned_cols=182 Identities=12% Similarity=0.029 Sum_probs=119.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++ ++|+||++++
T Consensus 19 GasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~ 98 (265)
T 2o23_A 19 GGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAV 98 (265)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEEEECCccCC
Confidence 369999999999999999999999998765322 224578999999999999998887 7999998722
Q ss_pred -C----------c------------------hhh----hhhhc------CCCeEEEeceeeeccCCCCcccccchhHHH-
Q 028525 75 -G----------F------------------ISN----AGSLK------GVQHVILLSQLSVYRGSGGIQALMKGNARK- 114 (208)
Q Consensus 75 -~----------~------------------~~~----a~~~~------gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~- 114 (208)
. . +.+ .+.+. +..+||++||...+.+..+...|...++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~ 178 (265)
T 2o23_A 99 ASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIV 178 (265)
T ss_dssp CCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCTTCHHHHHHHHHHH
T ss_pred CCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCCCCCCchhHHHHHHHH
Confidence 0 0 001 12222 567999999988765444444555433211
Q ss_pred -hHHHHHHHHHhcCCCEEEEeccccccCCCCcccee----eecCCcC-CCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC
Q 028525 115 -LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQ----FEEGCAA-NGSLSKEDAAFICVEALESIPQTGLIFEVVNG 188 (208)
Q Consensus 115 -~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~----~~~~~~~-~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~ 188 (208)
+.+.....+...++++++|+||++........... +...... ..+.+.+|+|++++.+++.+...|+.+.+.+|
T Consensus 179 ~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~G~~i~vdgG 258 (265)
T 2o23_A 179 GMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPFPSRLGDPAEYAHLVQAIIENPFLNGEVIRLDGA 258 (265)
T ss_dssp HHHHHHHHHHGGGTEEEEEEEECCBCCC----------CHHHHTCSSSCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred HHHHHHHHHHhhcCcEEEEEEeccccCccccccCHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhhcCccCceEEEECCC
Confidence 11111222334689999999999854322110000 0011112 34678899999999999866567889988765
Q ss_pred C
Q 028525 189 E 189 (208)
Q Consensus 189 ~ 189 (208)
-
T Consensus 259 ~ 259 (265)
T 2o23_A 259 I 259 (265)
T ss_dssp C
T ss_pred E
Confidence 3
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.5e-16 Score=117.15 Aligned_cols=179 Identities=12% Similarity=0.088 Sum_probs=116.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCce-EEEEcCCCCHHHHHHHh------cCCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYV-ESMAGDASNKKFLKTAL------RGVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v-~~v~~Dl~d~~~l~~~~------~~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++ .++.+|++|++++.+++ .++|+||++++
T Consensus 18 GasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~li~~Ag~~~ 97 (254)
T 2wsb_A 18 GAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSILVNSAGIAR 97 (254)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCcEEEECCccCC
Confidence 369999999999999999999999999776432 123356 88999999999998887 36899998732
Q ss_pred -Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCc--ccccchhHHHhHHH-HH---H
Q 028525 75 -GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGI--QALMKGNARKLAEQ-DE---S 121 (208)
Q Consensus 75 -~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~--~~~~~~~~~~~~~~-~e---~ 121 (208)
+. ....+++.+.++||++||...+...... ..|...+ ...+. ++ .
T Consensus 98 ~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~Y~~sK--~a~~~~~~~~~~ 175 (254)
T 2wsb_A 98 LHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASK--GAVHQLTRALAA 175 (254)
T ss_dssp CBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSSCBHHHHHHH--HHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCCCCCcchHHHHHH--HHHHHHHHHHHH
Confidence 10 0112345678899999998776533222 3454422 21111 11 1
Q ss_pred HHHhcCCCEEEEeccccccCCCCc----cce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGK----QGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~----~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+...+++++++|||.+....... ... .+........+.+.+|+|++++.++.++. ..|+.+++.+|
T Consensus 176 ~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 250 (254)
T 2wsb_A 176 EWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMTPMGRCGEPSEIAAAALFLASPAASYVTGAILAVDGG 250 (254)
T ss_dssp HHGGGTEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHhhcCeEEEEEEecccCchhhhccccChHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 223358999999999986432110 000 01111122446788999999999986543 35788888755
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=117.27 Aligned_cols=178 Identities=13% Similarity=0.111 Sum_probs=115.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEc-Cchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVK-DKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R-~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++| +.++..+ ..+.++.++.+|++|++++.++++ ++|+||+++
T Consensus 28 GasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~A 107 (274)
T 1ja9_A 28 GAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNS 107 (274)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 46999999999999999999999999 5443221 124568899999999999998886 789999773
Q ss_pred C----Cc----------------------hhhhhh-h--cCCCeEEEeceeeec-cCCCCcccccchhHHHhHHH-HHHH
Q 028525 74 E----GF----------------------ISNAGS-L--KGVQHVILLSQLSVY-RGSGGIQALMKGNARKLAEQ-DESM 122 (208)
Q Consensus 74 ~----~~----------------------~~~a~~-~--~gv~~~v~~Ss~~~~-~~~~~~~~~~~~~~~~~~~~-~e~~ 122 (208)
+ +. +.+++. . .+ ++||++||...+ ....+...|...+ ...+. ++.+
T Consensus 108 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~~~~~~~~Y~~sK--~a~~~~~~~~ 184 (274)
T 1ja9_A 108 GMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSIAAVMTGIPNHALYAGSK--AAVEGFCRAF 184 (274)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCGGGTCCSCCSCHHHHHHH--HHHHHHHHHH
T ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEcChHhccCCCCCCchHHHHH--HHHHHHHHHH
Confidence 2 10 001111 1 24 699999998876 4333344454432 22111 1111
Q ss_pred ---HHhcCCCEEEEeccccccCCCC------------c---cce--eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CC
Q 028525 123 ---LMASGIPYTIIRTGVLQNTPGG------------K---QGF--QFEEGCAANGSLSKEDAAFICVEALESIPQ--TG 180 (208)
Q Consensus 123 ---l~~~~~~~tivRp~~~~~~~~~------------~---~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~ 180 (208)
+...+++++++|||.+...... . ... .+........+++.+|+|++++.++.++.. .|
T Consensus 185 ~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~l~~~~~~~~~G 264 (274)
T 1ja9_A 185 AVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSALCQEESEWING 264 (274)
T ss_dssp HHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCS
T ss_pred HHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhcCCCCCccCHHHHHHHHHHHhCcccccccC
Confidence 2235899999999988542110 0 000 011112234577899999999999876542 58
Q ss_pred cEEEEeeC
Q 028525 181 LIFEVVNG 188 (208)
Q Consensus 181 ~~~~i~~~ 188 (208)
+.|++.+|
T Consensus 265 ~~~~v~gG 272 (274)
T 1ja9_A 265 QVIKLTGG 272 (274)
T ss_dssp CEEEESTT
T ss_pred cEEEecCC
Confidence 89998865
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=114.74 Aligned_cols=182 Identities=12% Similarity=0.076 Sum_probs=119.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc---CCCEEEEcCC----Cc-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR---GVRSIICPSE----GF- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~---~~d~vi~~~~----~~- 76 (208)
+++|.||++++++|+++|++|++++|+.++..+ ....++.++.+|++|.+++.++++ ++|++|++++ +.
T Consensus 21 Gas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~ 100 (249)
T 3f9i_A 21 GASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDILVCNAGITSDTLA 100 (249)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEEEECCC-------
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEEEECCCCCCCCcc
Confidence 469999999999999999999999999876432 234578999999999999999987 5799998732 10
Q ss_pred ---------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCCC
Q 028525 77 ---------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGIP 129 (208)
Q Consensus 77 ---------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~~ 129 (208)
+ ...+.+.+..+||++||...+.+..+...|..+++-. +.+.....+...+++
T Consensus 101 ~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 180 (249)
T 3f9i_A 101 IRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGIT 180 (249)
T ss_dssp ------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CCSCSHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHcCcE
Confidence 0 1123445667999999988776554455565533211 111111223346899
Q ss_pred EEEEeccccccCCCCccc----eeeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCC
Q 028525 130 YTIIRTGVLQNTPGGKQG----FQFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGE 189 (208)
Q Consensus 130 ~tivRp~~~~~~~~~~~~----~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~ 189 (208)
++.++||.+......... ..+........+.+.+|+|++++.++.++.. .|+.+++.+|.
T Consensus 181 v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG~ 246 (249)
T 3f9i_A 181 VNAVAPGFIKSDMTDKLNEKQREAIVQKIPLGTYGIPEDVAYAVAFLASNNASYITGQTLHVNGGM 246 (249)
T ss_dssp EEEEEECCBC------CCHHHHHHHHHHCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred EEEEecCccccCcccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCccCCccCcEEEECCCE
Confidence 999999998643221100 0011112234567789999999999876543 48999988654
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.3e-15 Score=112.96 Aligned_cols=197 Identities=11% Similarity=-0.027 Sum_probs=129.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 18 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~ 97 (271)
T 3tzq_B 18 GACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSD 97 (271)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 358999999999999999999999999876322 235578999999999999998886 7899998722
Q ss_pred C-c------------------------hhh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHH
Q 028525 75 G-F------------------------ISN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 75 ~-~------------------------~~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
. . ..+ .+.+.+..+||++||...+....+...|..+++-. +.+.....+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~ 177 (271)
T 3tzq_B 98 PADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQY 177 (271)
T ss_dssp TTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSBCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 1 0 001 13456778999999998776555555565533211 111111223
Q ss_pred HhcCCCEEEEeccccccCCCCcc---ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCc-chhhH
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQ---GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEE-KVSDW 195 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~---~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~-~~~e~ 195 (208)
...+++++.|+||.+........ .. .+........+.+.+|+|++++.++.++. ..|+.+++.+|.. ....+
T Consensus 178 ~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~~~~~~~ 257 (271)
T 3tzq_B 178 GRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHHLAGRIGEPHEIAELVCFLASDRAAFITGQVIAADSGLLAHLPGL 257 (271)
T ss_dssp GGGTEEEEEEEECCBCCTTTC---CHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTTBCTTH
T ss_pred hhcCEEEEEEEeCCCcCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcccCCcCCCEEEECCCccccCCCc
Confidence 34789999999999865432210 00 01111222445678999999999987654 3589999987743 33445
Q ss_pred HHHHHHHhh
Q 028525 196 KKCFSRLME 204 (208)
Q Consensus 196 ~~~~~~~~~ 204 (208)
.+......+
T Consensus 258 ~~~~~~~~~ 266 (271)
T 3tzq_B 258 PQIRASVAE 266 (271)
T ss_dssp HHHHHHHHH
T ss_pred cccCCcccc
Confidence 555544443
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=114.98 Aligned_cols=182 Identities=12% Similarity=0.102 Sum_probs=121.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ .....+..+.+|++|++++.++++ ++|++|++++
T Consensus 16 Gas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~ 95 (248)
T 3op4_A 16 GASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITR 95 (248)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 358999999999999999999999999876322 233467889999999999988886 7899998732
Q ss_pred -Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 75 -GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 75 -~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
+.+ ...+.+.+..+||++||...+.+..+...|..+++-. +.+..-..+..
T Consensus 96 ~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~ 175 (248)
T 3op4_A 96 DNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVAS 175 (248)
T ss_dssp CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 1123345667999999987765554555565533211 11111122334
Q ss_pred cCCCEEEEeccccccCCCCccc----eeeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQG----FQFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGE 189 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~~----~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~ 189 (208)
.+++++.|+||.+......... ..+....+...+.+.+|+|++++.++.++.. .|+.+++.+|-
T Consensus 176 ~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdgG~ 245 (248)
T 3op4_A 176 RGVTVNTVAPGFIETDMTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGM 245 (248)
T ss_dssp GTEEEEEEEECSBSSTTTTTSCHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred hCeEEEEEeeCCCCCchhhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCccCCccCcEEEECCCe
Confidence 6899999999998643321100 0011112234566889999999998875533 48889887653
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-15 Score=117.01 Aligned_cols=181 Identities=15% Similarity=0.157 Sum_probs=116.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|+++.|++++..+. .+.++.++.+|++|++++.++++ ++|+||++++
T Consensus 51 GasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~id~li~~Ag 130 (285)
T 2c07_A 51 GAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNVDILVNNAG 130 (285)
T ss_dssp STTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEECCC
T ss_pred CCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3699999999999999999999998887653221 13468899999999999988874 6899998722
Q ss_pred ----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 75 ----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 75 ----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
+. ....+.+.+.++||++||...+.+..+...|...+... +.+.....
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e 210 (285)
T 2c07_A 131 ITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKE 210 (285)
T ss_dssp CCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 10 01123345778999999987655443444555433211 11111122
Q ss_pred HHhcCCCEEEEeccccccCCCCccc--e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQG--F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~~--~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+...++++++||||.+......... . .+........+++.+|+|++++.++.++. ..|+.+++.+|
T Consensus 211 ~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~~G~~i~v~gG 282 (285)
T 2c07_A 211 LASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIPAGRMGTPEEVANLACFLSSDKSGYINGRVFVIDGG 282 (285)
T ss_dssp HGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHhCcEEEEEEeCcEecCchhhcCHHHHHHHHhhCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCEEEeCCC
Confidence 3346899999999998543221100 0 00111122346789999999999987653 35788888755
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-15 Score=114.75 Aligned_cols=181 Identities=13% Similarity=0.034 Sum_probs=116.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-hhhh---c----CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-AMES---F----GTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~~~---~----~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++++|+.++ ..+. . +.++.++.+|++|++++.++++ ++|++|++
T Consensus 11 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~lv~~ 90 (260)
T 1x1t_A 11 GSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNN 90 (260)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred CCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 468999999999999999999999998765 3221 1 4468899999999999988875 68999987
Q ss_pred CC----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 73 SE----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 73 ~~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
++ +. ....+++.+.++||++||...+.+..+...|..+++-. +.+...
T Consensus 91 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la 170 (260)
T 1x1t_A 91 AGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTA 170 (260)
T ss_dssp CCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCCCCCchHHHHHHHHHHHHHHHH
Confidence 32 11 01123445678999999988765444444555433211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc-------------ce--ee-ecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcE
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ-------------GF--QF-EEGCAANGSLSKEDAAFICVEALESIP--QTGLI 182 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~-------------~~--~~-~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~ 182 (208)
..+...+++++.|+||++........ .. .+ ....+...+.+.+|+|++++.++.++. ..|+.
T Consensus 171 ~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dva~~~~~l~s~~~~~~tG~~ 250 (260)
T 1x1t_A 171 LETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGTT 250 (260)
T ss_dssp HHHTTTTEEEEEEEECCBCC------------------------CHHHHCTTCCCBCHHHHHHHHHHHHSGGGTTCCSCE
T ss_pred HHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhChhhcCCCCCE
Confidence 12234689999999999864321110 00 00 000112345678999999999987543 35788
Q ss_pred EEEeeC
Q 028525 183 FEVVNG 188 (208)
Q Consensus 183 ~~i~~~ 188 (208)
+++.+|
T Consensus 251 ~~vdgG 256 (260)
T 1x1t_A 251 VSVDGG 256 (260)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 888755
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=114.77 Aligned_cols=181 Identities=13% Similarity=0.130 Sum_probs=116.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEE-EcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKAL-VKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~-~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|+++ .|+.++... ..+.++.++.+|++|++++.++++ ++|++|+++
T Consensus 8 GasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~A 87 (244)
T 1edo_A 8 GASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNA 87 (244)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCSEEEECC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 579999999999999999999995 787654321 124468899999999999998886 689999872
Q ss_pred C----Cc----------------------hh----hhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 E----GF----------------------IS----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~----~~----------------------~~----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+ +. +. ..+.+.+.++||++||...+.+..+...|...+... +.+....
T Consensus 88 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~ 167 (244)
T 1edo_A 88 GITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAR 167 (244)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCCCCCccchhhHHHHHHHHHHHHH
Confidence 2 10 01 112335778999999986654433444554433211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCc--cce--eeecCCcCCCcccHHHHHHHHHHHhhCCC---CCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGK--QGF--QFEEGCAANGSLSKEDAAFICVEALESIP---QTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~--~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~---~~~~~~~i~~~ 188 (208)
.+...+++++++|||++....... ... .+........+.+.+|+|++++.++..+. ..|+.|++.+|
T Consensus 168 e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG 241 (244)
T 1edo_A 168 EGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRTGQPENVAGLVEFLALSPAASYITGQAFTIDGG 241 (244)
T ss_dssp HHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSCTTCSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTT
T ss_pred HhhhcCCEEEEEeeCccccchhhhcChHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCccCCcCCCEEEeCCC
Confidence 233468999999999985421110 000 01111122346788999999999985443 24788888755
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-15 Score=114.52 Aligned_cols=183 Identities=14% Similarity=0.092 Sum_probs=118.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cC-CceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FG-TYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~-~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+ .++.++.+|++|++++.++++ ++|++|+++
T Consensus 17 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA 96 (262)
T 3pk0_A 17 GGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANA 96 (262)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 3589999999999999999999999998763221 12 468999999999999988876 789999873
Q ss_pred C----Cc--------------------------hhhhhhhcCCCeEEEeceeeec-cCCCCcccccchhHHH--hHHHHH
Q 028525 74 E----GF--------------------------ISNAGSLKGVQHVILLSQLSVY-RGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 74 ~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~-~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
+ .. ....+.+.+..+||++||.... .+..+...|..+++-. +.+...
T Consensus 97 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~Y~asK~a~~~l~~~la 176 (262)
T 3pk0_A 97 GVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAA 176 (262)
T ss_dssp CCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTBCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCCCChhhHHHHHHHHHHHHHHH
Confidence 2 11 0112344577899999998754 3333344555433211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCC--Cccce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCc
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPG--GKQGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEE 190 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~--~~~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~ 190 (208)
..+...+++++.|+||.+..... ..... .+........+.+.+|+|++++.++.++. ..|+.+++.+|..
T Consensus 177 ~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~ 252 (262)
T 3pk0_A 177 IELAPHKITVNAIMPGNIMTEGLLENGEEYIASMARSIPAGALGTPEDIGHLAAFLATKEAGYITGQAIAVDGGQV 252 (262)
T ss_dssp HHHGGGTCEEEEEEECSBCCHHHHTTCHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHhhCcEEEEEEeCcCcCccccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCcCCEEEECCCee
Confidence 22334799999999999854211 01000 01111222445678999999999887554 3588999886653
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.8e-16 Score=119.42 Aligned_cols=182 Identities=9% Similarity=0.048 Sum_probs=118.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|++++..+. .+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 29 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~~Ag 108 (277)
T 2rhc_B 29 GATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAG 108 (277)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 3699999999999999999999999997653211 13468899999999999888876 6899998732
Q ss_pred ----Cch----------------------hh----h--hhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 75 ----GFI----------------------SN----A--GSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 75 ----~~~----------------------~~----a--~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
+.+ .+ . +.+.+.++||++||...+.+..+...|..+++-. +.+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la 188 (277)
T 2rhc_B 109 RPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALG 188 (277)
T ss_dssp CCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccCCCCCccHHHHHHHHHHHHHHHH
Confidence 110 11 1 3334667999999987665443444555433211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc------------c-e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEE
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ------------G-F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIF 183 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~------------~-~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~ 183 (208)
..+...++++++|+||++........ . . .+....+...+.+.+|+|++++.++.++. ..|+.+
T Consensus 189 ~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~~ 268 (277)
T 2rhc_B 189 LELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLIGPGAAAVTAQAL 268 (277)
T ss_dssp HHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred HHHHHhCcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEE
Confidence 22334689999999999854321100 0 0 00011122446788999999999987653 357889
Q ss_pred EEeeCC
Q 028525 184 EVVNGE 189 (208)
Q Consensus 184 ~i~~~~ 189 (208)
++.+|-
T Consensus 269 ~vdGG~ 274 (277)
T 2rhc_B 269 NVCGGL 274 (277)
T ss_dssp EESTTC
T ss_pred EECCCc
Confidence 988653
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-15 Score=114.75 Aligned_cols=181 Identities=12% Similarity=0.095 Sum_probs=118.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCc------------hhhh------hhcCCceEEEEcCCCCHHHHHHHhc------
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDK------------RNAM------ESFGTYVESMAGDASNKKFLKTALR------ 64 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~------------~~~~------~~~~~~v~~v~~Dl~d~~~l~~~~~------ 64 (208)
++|.||++++++|+++|++|++++|++ +... ...+.++.++.+|++|++++.++++
T Consensus 18 as~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 97 (281)
T 3s55_A 18 GARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTL 97 (281)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 589999999999999999999999973 2111 1124578999999999999988876
Q ss_pred -CCCEEEEcCC----Cc----------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH
Q 028525 65 -GVRSIICPSE----GF----------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR 113 (208)
Q Consensus 65 -~~d~vi~~~~----~~----------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~ 113 (208)
++|++|++++ +. . ...+.+.+..+||++||...+.+..+...|..+++-
T Consensus 98 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a 177 (281)
T 3s55_A 98 GGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWG 177 (281)
T ss_dssp TCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCTTCHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcCCCCCCchhHHHHHH
Confidence 7899998732 10 0 111344567799999999877655455556553321
Q ss_pred H--hHHHHHHHHHhcCCCEEEEeccccccCCCCcc----cee--e-------------ecCCcCCCcccHHHHHHHHHHH
Q 028525 114 K--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQ----GFQ--F-------------EEGCAANGSLSKEDAAFICVEA 172 (208)
Q Consensus 114 ~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~----~~~--~-------------~~~~~~~~~v~~~Dva~~~~~~ 172 (208)
. +.+..-..+...++++..|+||++........ .+. + ........+.+.+|+|++++.+
T Consensus 178 ~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~L 257 (281)
T 3s55_A 178 VIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFL 257 (281)
T ss_dssp HHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHHHHHHHHCSSSCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhHHHHHHHhhhccCcCCCCHHHHHHHHHHH
Confidence 1 11111111224689999999999865432210 000 0 0011124567889999999999
Q ss_pred hhCCCC--CCcEEEEeeCC
Q 028525 173 LESIPQ--TGLIFEVVNGE 189 (208)
Q Consensus 173 l~~~~~--~~~~~~i~~~~ 189 (208)
+.++.. .|+.+++.+|.
T Consensus 258 ~s~~~~~itG~~i~vdgG~ 276 (281)
T 3s55_A 258 VDEASSHITGTVLPIDAGA 276 (281)
T ss_dssp HSGGGTTCCSCEEEESTTG
T ss_pred cCCcccCCCCCEEEECCCc
Confidence 876543 48899998664
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=119.05 Aligned_cols=193 Identities=10% Similarity=0.030 Sum_probs=123.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCC---ceEEEEcCCCCHHHHHHHhc-------CCCEEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGT---YVESMAGDASNKKFLKTALR-------GVRSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~---~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~ 71 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+. ++.++.+|++|++++.++++ ++|++|+
T Consensus 33 Gas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvn 112 (297)
T 1xhl_A 33 GSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKFGKIDILVN 112 (297)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3599999999999999999999999997653221 122 68899999999999988876 6899998
Q ss_pred cCC----Cc--h--------------------------hhhhhhcCCCeEEEeceeeeccCC-CCcccccchhHHH--hH
Q 028525 72 PSE----GF--I--------------------------SNAGSLKGVQHVILLSQLSVYRGS-GGIQALMKGNARK--LA 116 (208)
Q Consensus 72 ~~~----~~--~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~-~~~~~~~~~~~~~--~~ 116 (208)
+++ +. + ...+.+.+ .+||++||...+.+. .+...|..+++-. +.
T Consensus 113 nAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~~~~~~~Y~asKaa~~~l~ 191 (297)
T 1xhl_A 113 NAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQAHSGYPYYACAKAALDQYT 191 (297)
T ss_dssp CCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSCCTTSHHHHHHHHHHHHHH
T ss_pred CCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCCCCCcchHHHHHHHHHHHH
Confidence 722 11 1 01133345 799999998776543 3334454433211 11
Q ss_pred HHHHHHHHhcCCCEEEEeccccccCCCCcc-----------ce--eeecCCcCCCcccHHHHHHHHHHHhhCC---CCCC
Q 028525 117 EQDESMLMASGIPYTIIRTGVLQNTPGGKQ-----------GF--QFEEGCAANGSLSKEDAAFICVEALESI---PQTG 180 (208)
Q Consensus 117 ~~~e~~l~~~~~~~tivRp~~~~~~~~~~~-----------~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~---~~~~ 180 (208)
+.....+...+++++.|+||++........ .. .+........+.+.+|+|++++.++.++ ...|
T Consensus 192 ~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~l~s~~~~~~itG 271 (297)
T 1xhl_A 192 RCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFLADRNLSSYIIG 271 (297)
T ss_dssp HHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCS
T ss_pred HHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCccC
Confidence 111122335799999999999854321100 00 0001111234578899999999998754 2458
Q ss_pred cEEEEeeCCc-chhhHHHHHHH
Q 028525 181 LIFEVVNGEE-KVSDWKKCFSR 201 (208)
Q Consensus 181 ~~~~i~~~~~-~~~e~~~~~~~ 201 (208)
+.+++.+|.. ...+.+.++.+
T Consensus 272 ~~i~vdGG~~~~~~~~~~~~~~ 293 (297)
T 1xhl_A 272 QSIVADGGSTLVMGMQTHDLMS 293 (297)
T ss_dssp CEEEESTTGGGCCGGGGSCHHH
T ss_pred cEEEECCCccccccccccchhh
Confidence 8898886653 55555444443
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.7e-16 Score=114.16 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=109.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cCCceEEEEcCCCCHHHHHHHhc---CCCEEEEcCC----Cc-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FGTYVESMAGDASNKKFLKTALR---GVRSIICPSE----GF- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~---~~d~vi~~~~----~~- 76 (208)
+++|.||++++++|+++ +|++++|++++.... .. . .++.+|++|++++.++++ ++|+||++++ +.
T Consensus 7 Gasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~-~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~ 82 (207)
T 2yut_A 7 GATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVG-A-RALPADLADELEAKALLEEAGPLDLLVHAVGKAGRASV 82 (207)
T ss_dssp TTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHT-C-EECCCCTTSHHHHHHHHHHHCSEEEEEECCCCCCCBCS
T ss_pred cCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhcc-C-cEEEeeCCCHHHHHHHHHhcCCCCEEEECCCcCCCCCh
Confidence 57999999999999988 999999987664322 12 2 888999999999999998 8999998722 10
Q ss_pred ---------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCCCEEEE
Q 028525 77 ---------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGIPYTII 133 (208)
Q Consensus 77 ---------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~~~tiv 133 (208)
+.+++.+.+.++||++||..++.+..+...|...+... +.+.....+...+++++++
T Consensus 83 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v 162 (207)
T 2yut_A 83 REAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKELLREGVHLVLV 162 (207)
T ss_dssp CC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHSSTTBHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred hhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhccCCCCcchHHHHHHHHHHHHHHHHHHHhhhCCEEEEE
Confidence 12234445678999999998876555555565433211 1111112223469999999
Q ss_pred eccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 134 RTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 134 Rp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
|||.+...... ..+.....+++.+|+|++++.+++++..
T Consensus 163 ~pg~v~t~~~~------~~~~~~~~~~~~~dva~~~~~~~~~~~~ 201 (207)
T 2yut_A 163 RLPAVATGLWA------PLGGPPKGALSPEEAARKVLEGLFREPV 201 (207)
T ss_dssp CCCCBCSGGGG------GGTSCCTTCBCHHHHHHHHHHHHC--CC
T ss_pred ecCcccCCCcc------ccCCCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 99998643211 1122336678999999999999986653
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-15 Score=112.93 Aligned_cols=165 Identities=12% Similarity=0.078 Sum_probs=112.4
Q ss_pred cccCccHHHHHHHHHhCCC-------cEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCC
Q 028525 8 KRKKMNFRMVILSLIVKRT-------RIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVR 67 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~-------~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d 67 (208)
+++|.||++++++|+++|+ +|++++|+.++.... .+.++.++.+|++|++++.++++ ++|
T Consensus 9 GasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 88 (244)
T 2bd0_A 9 GAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVERYGHID 88 (244)
T ss_dssp TTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHHTSCCS
T ss_pred CCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHHHhCCCCC
Confidence 5799999999999999999 999999987653221 13468899999999999988886 689
Q ss_pred EEEEcCC----Cc----------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--h
Q 028525 68 SIICPSE----GF----------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--L 115 (208)
Q Consensus 68 ~vi~~~~----~~----------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~ 115 (208)
+||++++ +. + ...+.+.+.++||++||..++.+..+...|...++.. +
T Consensus 89 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~ 168 (244)
T 2bd0_A 89 CLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGL 168 (244)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHH
T ss_pred EEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCCCCCCchhHHHHHHHHHH
Confidence 9998732 10 0 0113345778999999998776544445555433211 1
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 116 AEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 116 ~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
.+.....+...+++++++|||++....... . .. .....+++.+|+|++++.++.++.
T Consensus 169 ~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~--~~-~~~~~~~~~~dva~~~~~l~~~~~ 225 (244)
T 2bd0_A 169 VETMRLYARKCNVRITDVQPGAVYTPMWGK--V--DD-EMQALMMMPEDIAAPVVQAYLQPS 225 (244)
T ss_dssp HHHHHHHHTTTTEEEEEEEECCBCSTTTCC--C--CS-TTGGGSBCHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHhhccCcEEEEEECCCccchhhhh--c--cc-cccccCCCHHHHHHHHHHHHhCCc
Confidence 111112233468999999999986543221 1 01 112356789999999999998665
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.6e-15 Score=113.76 Aligned_cols=181 Identities=13% Similarity=0.021 Sum_probs=117.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCc-hhhhh----h---cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDK-RNAME----S---FGTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~-~~~~~----~---~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++++|+. +.... . .+..+.++.+|++|++++.++++ ++|++|++
T Consensus 32 Gas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~n 111 (281)
T 3v2h_A 32 GSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFGGADILVNN 111 (281)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHTSSCSEEEEC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHCCCCCEEEEC
Confidence 3689999999999999999999999954 32211 1 13578999999999999988876 68999987
Q ss_pred CCC----c----------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 73 SEG----F----------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 73 ~~~----~----------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
++. . + ...+.+.+..+||++||...+.+......|..+++-. +.+...
T Consensus 112 Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la 191 (281)
T 3v2h_A 112 AGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVA 191 (281)
T ss_dssp CCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCCCCchHHHHHHHHHHHHHHHHH
Confidence 321 1 0 1123456677999999988776544445565533211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc--------ce--------eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcE
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ--------GF--------QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLI 182 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~--------~~--------~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~ 182 (208)
..+...++++..|+||++........ .. .+....+...+.+.+|+|++++.++.++. ..|+.
T Consensus 192 ~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~a~~itG~~ 271 (281)
T 3v2h_A 192 LEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKFITVEQVASLALYLAGDDAAQITGTH 271 (281)
T ss_dssp HHHGGGTEEEEEEEECSBCC----------------------------CCTTCSCBCHHHHHHHHHHHHSSGGGGCCSCE
T ss_pred HHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHcCCCcCCCCCcE
Confidence 22334689999999999864321110 00 01111223456788999999999987654 35889
Q ss_pred EEEeeC
Q 028525 183 FEVVNG 188 (208)
Q Consensus 183 ~~i~~~ 188 (208)
+++.+|
T Consensus 272 i~vdGG 277 (281)
T 3v2h_A 272 VSMDGG 277 (281)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 998755
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=111.01 Aligned_cols=177 Identities=11% Similarity=0.034 Sum_probs=111.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----Cc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE----GF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----~~ 76 (208)
+++|.||++++++|+++|++|++++|+.+.. ..++.++.+|++|++++.++++ ++|++|++++ +.
T Consensus 14 Gas~giG~~ia~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~ 89 (250)
T 2fwm_X 14 GAGKGIGYATALAFVEAGAKVTGFDQAFTQE----QYPFATEVMDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGA 89 (250)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCCCSS----CCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEECCCCCCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCchhhh----cCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCC
Confidence 4699999999999999999999999987531 1237889999999999998886 6899998732 11
Q ss_pred ----------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCC
Q 028525 77 ----------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGI 128 (208)
Q Consensus 77 ----------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~ 128 (208)
. ...+++.+.++||++||...+.+..+...|..++... +.+.....+...++
T Consensus 90 ~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi 169 (250)
T 2fwm_X 90 TDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGV 169 (250)
T ss_dssp TTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred cccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCCCCchHHHHHHHHHHHHHHHHHHhCccCC
Confidence 0 1123456778999999998776544444555433211 11111122334699
Q ss_pred CEEEEeccccccCCCCcc----ce---eeec-------CCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 129 PYTIIRTGVLQNTPGGKQ----GF---QFEE-------GCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~~~----~~---~~~~-------~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
++++||||++........ .. .+.. ..+.....+.+|+|++++.++.++. ..|+.+.+.+|
T Consensus 170 ~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 245 (250)
T 2fwm_X 170 RCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDLASHITLQDIVVDGG 245 (250)
T ss_dssp EEEEEEECCC------------------------------------CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEEEEECCcccCccccccccChhHHHHHHhhhhhcccccCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 999999999864321110 00 0100 1111235678999999999987653 35788888755
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.2e-15 Score=114.37 Aligned_cols=181 Identities=14% Similarity=0.033 Sum_probs=116.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh-------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME-------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~-------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++ ++|++|+++
T Consensus 28 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lvnnA 107 (267)
T 1vl8_A 28 GGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAA 107 (267)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 469999999999999999999999999765321 124568889999999999988876 689999873
Q ss_pred C----Cch--------------------------hhhhhhcCCCeEEEeceee-eccCCCCcccccchhHHH--hHHHHH
Q 028525 74 E----GFI--------------------------SNAGSLKGVQHVILLSQLS-VYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 74 ~----~~~--------------------------~~a~~~~gv~~~v~~Ss~~-~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
+ +.+ ...+++.+.++||++||.. ...+..+...|..+++-. +.+...
T Consensus 108 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~Y~asK~a~~~~~~~la 187 (267)
T 1vl8_A 108 GINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALA 187 (267)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhccCCCCChhHHHHHHHHHHHHHHHH
Confidence 2 110 1123455678999999987 443333334454432211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc----ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ----GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~----~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..+...++++++|+||++........ .. .+........+.+.+|+|++++.++.++. ..|+.+.+.+|
T Consensus 188 ~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG 263 (267)
T 1vl8_A 188 KEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGG 263 (267)
T ss_dssp HHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHhcccCeEEEEEEeccCccccccccccChHHHHHHHhhCCCCCCcCHHHHHHHHHHHcCccccCCcCCeEEECCC
Confidence 22334699999999999854322110 00 00011122346788999999999987543 34788887754
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5e-15 Score=112.58 Aligned_cols=181 Identities=13% Similarity=0.097 Sum_probs=119.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCc-hhhh------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDK-RNAM------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~-~~~~------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|+. ++.. ...+.++.++.+|++|++++.++++ ++|++|+++
T Consensus 11 Gas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA 90 (246)
T 3osu_A 11 GASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNA 90 (246)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4689999999999999999999988754 3211 1124468899999999999988886 789999873
Q ss_pred C----Cc----------------------hhh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 E----GF----------------------ISN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~----~~----------------------~~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+ +. ..+ .+.+.+..+||++||...+.+..+...|..+++-. +.+....
T Consensus 91 g~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~ 170 (246)
T 3osu_A 91 GITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAAR 170 (246)
T ss_dssp CCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 2 10 011 12456777999999987765544455565533211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCccc--e--eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQG--F--QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~~--~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
.+...+++++.|+||.+......... . .+....+...+.+.+|+|++++.++.++.. .|+.+++.+|
T Consensus 171 e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdgG 243 (246)
T 3osu_A 171 ELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG 243 (246)
T ss_dssp HHGGGTEEEEEEEECSBGGGCCSCSCHHHHHHHHTTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HhcccCeEEEEEEECCCcCCcccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence 23356899999999998654322100 0 011122234456779999999998876543 4889998865
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-15 Score=113.04 Aligned_cols=181 Identities=14% Similarity=0.088 Sum_probs=117.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc-CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----C
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF-GTYVESMAGDASNKKFLKTALR-------GVRSIICPSE----G 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----~ 75 (208)
+++|.||++++++|+++|++|++++|+.++..+.. ..++.++.+|++|++++.++++ ++|++|++++ +
T Consensus 12 Gas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lvn~Ag~~~~~ 91 (245)
T 1uls_A 12 GAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVHYAGITRDN 91 (245)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCC
Confidence 46999999999999999999999999987643321 1147889999999999988875 4799998732 1
Q ss_pred ch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcC
Q 028525 76 FI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASG 127 (208)
Q Consensus 76 ~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~ 127 (208)
.+ ...+++.+.++||++||.. ..+..+...|..+++-. +.+.....+...+
T Consensus 92 ~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~g 170 (245)
T 1uls_A 92 FHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YLGNLGQANYAASMAGVVGLTRTLALELGRWG 170 (245)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GGCCTTCHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred ChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-hcCCCCchhHHHHHHHHHHHHHHHHHHHhHhC
Confidence 10 1123345678999999988 43333334454433211 1111222344579
Q ss_pred CCEEEEeccccccCCCCccc--e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 128 IPYTIIRTGVLQNTPGGKQG--F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 128 ~~~tivRp~~~~~~~~~~~~--~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
++++.|+||++......... . .+........+.+.+|+|++++.++.++. ..|+.+.+.+|.
T Consensus 171 i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 238 (245)
T 1uls_A 171 IRVNTLAPGFIETRMTAKVPEKVREKAIAATPLGRAGKPLEVAYAALFLLSDESSFITGQVLFVDGGR 238 (245)
T ss_dssp EEEEEEEECSBCCTTTSSSCHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred eEEEEEEeCcCcCcchhhcCHHHHHHHHhhCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECCCc
Confidence 99999999998543321100 0 00011112346788999999999987543 357888887553
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=6e-15 Score=113.86 Aligned_cols=181 Identities=12% Similarity=0.030 Sum_probs=116.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHh--------cCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTAL--------RGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~--------~~~d~vi~~~~ 74 (208)
++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.+++ .++|++|++++
T Consensus 29 as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~id~lv~nAg 108 (273)
T 1ae1_A 29 GSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAG 108 (273)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSCCCEEEECCC
T ss_pred CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCcEEEECCC
Confidence 589999999999999999999999997653221 2346889999999999998887 46899998732
Q ss_pred ----Cc----------------------hh----hhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 75 ----GF----------------------IS----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 75 ----~~----------------------~~----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
+. .. ..+++.+.++||++||...+.+..+...|..+++-. +.+.....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e 188 (273)
T 1ae1_A 109 VVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACE 188 (273)
T ss_dssp CCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 10 00 123445678999999998776544445555433211 11111122
Q ss_pred HHhcCCCEEEEeccccccCCCCccce------e----eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQGF------Q----FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~~~------~----~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
+...+++++.|+||++.......... . +........+.+.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 189 ~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 267 (273)
T 1ae1_A 189 WAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFPAASYITGQIIWADGGF 267 (273)
T ss_dssp HGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCcCCCEEEECCCc
Confidence 33469999999999986533211000 0 0000112345678999999999886543 257888887653
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-15 Score=114.25 Aligned_cols=180 Identities=12% Similarity=0.095 Sum_probs=115.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC---
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG--- 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~--- 75 (208)
++|.||++++++|+++|++|++..|+.++..+ ..+.++.++.+|++|++++.++++ ++|++|++++.
T Consensus 35 as~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~ 114 (266)
T 3grp_A 35 ATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRD 114 (266)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCEEEECCCCC--
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 58899999999999999999999999876432 235578999999999999988875 68999987321
Q ss_pred -c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhc
Q 028525 76 -F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMAS 126 (208)
Q Consensus 76 -~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~ 126 (208)
. ....+.+.+..+||++||...+.+..+...|..+++-. +.+..-..+...
T Consensus 115 ~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~ 194 (266)
T 3grp_A 115 GLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIASR 194 (266)
T ss_dssp ---CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCCCCchhHHHHHHHHHHHHHHHHHHhhhh
Confidence 0 01123446677999999987765444445555433211 111111223346
Q ss_pred CCCEEEEeccccccCCCCc--cc--eeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 127 GIPYTIIRTGVLQNTPGGK--QG--FQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~~~~--~~--~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
++++..|+||++....... .. ..+....+...+.+.+|+|++++.++.++. ..|+.+++.+|
T Consensus 195 gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~~~~itG~~i~vdGG 262 (266)
T 3grp_A 195 NITVNCIAPGFIKSAMTDKLNEKQKEAIMAMIPMKRMGIGEEIAFATVYLASDEAAYLTGQTLHINGG 262 (266)
T ss_dssp TEEEEEEEECSBCSHHHHTCCHHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcEEEEEeeCcCCCchhhccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 8999999999985421100 00 001111223445678999999999887554 25888988755
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-15 Score=115.37 Aligned_cols=170 Identities=17% Similarity=0.060 Sum_probs=108.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------c--CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------F--GTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~--~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
++|.||++++++|+++|++|++++|+.++.... . ...+.++.+|++|++++.++++ ++|+||+++
T Consensus 40 asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~vi~~A 119 (279)
T 1xg5_A 40 ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNA 119 (279)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECC
T ss_pred CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 599999999999999999999999987653221 1 1357889999999999888876 789999873
Q ss_pred C----Cc--------------------------hhhhhhhcCC--CeEEEeceeeecc--CCCCcccccchhHHH--hHH
Q 028525 74 E----GF--------------------------ISNAGSLKGV--QHVILLSQLSVYR--GSGGIQALMKGNARK--LAE 117 (208)
Q Consensus 74 ~----~~--------------------------~~~a~~~~gv--~~~v~~Ss~~~~~--~~~~~~~~~~~~~~~--~~~ 117 (208)
+ .. ....+++.++ ++||++||...+. +..+...|...++.. +.+
T Consensus 120 g~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~sK~a~~~~~~ 199 (279)
T 1xg5_A 120 GLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTE 199 (279)
T ss_dssp CCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSCGGGHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccCCCCCCchhHHHHHHHHHHHH
Confidence 2 10 1123445665 7999999988763 222333444432211 111
Q ss_pred HHHHHHH--hcCCCEEEEeccccccCCCC----ccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 118 QDESMLM--ASGIPYTIIRTGVLQNTPGG----KQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 118 ~~e~~l~--~~~~~~tivRp~~~~~~~~~----~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
.....+. ..+++++.|+||++...... ..............+++.+|+|++++.++..+..
T Consensus 200 ~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~i~~l~~~~~~ 266 (279)
T 1xg5_A 200 GLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEAVIYVLSTPAH 266 (279)
T ss_dssp HHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHHC---CBCHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHhhcCCCeEEEEEecCcccchhhhhhcccChhHHhhhcccccCCCHHHHHHHHHHHhcCCcc
Confidence 1112233 46899999999998543210 0000000001123467889999999999987653
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-15 Score=114.98 Aligned_cols=171 Identities=11% Similarity=0.034 Sum_probs=116.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC----c
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG----F 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~----~ 76 (208)
+++|.||++++++|+++|++|++++|+.++..+....++.++.+|++|.+++.++++ ++|++|++++. .
T Consensus 23 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~ 102 (266)
T 3p19_A 23 GASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQ 102 (266)
T ss_dssp STTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEECCCCCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEEECCCcCCCCC
Confidence 468999999999999999999999999887665555578999999999999988886 67999987321 0
Q ss_pred --------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCC
Q 028525 77 --------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGI 128 (208)
Q Consensus 77 --------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~ 128 (208)
....+.+.+..+||++||...+.+..+...|..+++-. +.+.....+...++
T Consensus 103 ~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi 182 (266)
T 3p19_A 103 IDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAASNV 182 (266)
T ss_dssp TTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCCCCCchHHHHHHHHHHHHHHHHHHhcccCc
Confidence 01123456778999999998776554455565533211 11111122334799
Q ss_pred CEEEEeccccccCCCCccc---ee--eec-CCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 129 PYTIIRTGVLQNTPGGKQG---FQ--FEE-GCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~~~~---~~--~~~-~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
+++.|+||++......... .. +.. ......+.+.+|+|++++.++.++..
T Consensus 183 ~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~av~~l~~~~~~ 238 (266)
T 3p19_A 183 RVMTIAPSAVKTELLSHTTSQQIKDGYDAWRVDMGGVLAADDVARAVLFAYQQPQN 238 (266)
T ss_dssp EEEEEEECSBSSSGGGGCSCHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCTT
T ss_pred EEEEEeeCccccchhhcccchhhhHHHHhhcccccCCCCHHHHHHHHHHHHcCCCC
Confidence 9999999998643211100 00 000 01224467889999999999988764
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=111.36 Aligned_cols=182 Identities=14% Similarity=0.054 Sum_probs=115.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~-- 75 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+..+.++.+|++|++++.++++ ++|++|++++.
T Consensus 14 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~ 93 (257)
T 3tpc_A 14 GASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHGLVNCAGTAP 93 (257)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 468999999999999999999999998876432 223468899999999999998886 78999987221
Q ss_pred --c--------------------------hh----hhhhh------cCCCeEEEeceeeeccCCCCcccccchhHHH--h
Q 028525 76 --F--------------------------IS----NAGSL------KGVQHVILLSQLSVYRGSGGIQALMKGNARK--L 115 (208)
Q Consensus 76 --~--------------------------~~----~a~~~------~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~ 115 (208)
. .. ..+.+ .+..+||++||...+.+..+...|..+++-. +
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~ 173 (257)
T 3tpc_A 94 GEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAASKGGVAAL 173 (257)
T ss_dssp CCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHH
T ss_pred CCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCCCCCcchHHHHHHHHHH
Confidence 0 00 11222 1456899999988776554455565533211 1
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccCCCCccc----eeeecCCcC-CCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC
Q 028525 116 AEQDESMLMASGIPYTIIRTGVLQNTPGGKQG----FQFEEGCAA-NGSLSKEDAAFICVEALESIPQTGLIFEVVNGE 189 (208)
Q Consensus 116 ~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~----~~~~~~~~~-~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~ 189 (208)
.+.....+...+++++.|+||++......... ..+...... ..+.+.+|+|++++.+++++...|+.+++.+|-
T Consensus 174 ~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~~r~~~~~dva~~v~~l~s~~~itG~~i~vdGG~ 252 (257)
T 3tpc_A 174 TLPAARELARFGIRVVTIAPGIFDTPMMAGMPQDVQDALAASVPFPPRLGRAEEYAALVKHICENTMLNGEVIRLDGAL 252 (257)
T ss_dssp HHHHHHHHGGGTEEEEEEEECCBSCC--------------CCSSSSCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTTC
T ss_pred HHHHHHHHHHcCeEEEEEEeCCCCChhhccCCHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcccCCcCCcEEEECCCc
Confidence 11111223347899999999998653321100 001111122 345678999999999998755568999988654
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-14 Score=110.29 Aligned_cols=182 Identities=12% Similarity=0.064 Sum_probs=119.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 13 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 13 GGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNAA 92 (257)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4689999999999999999999999998763221 23468899999999999988875 6799998733
Q ss_pred C----c----------------------hhh----hh-hhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 75 G----F----------------------ISN----AG-SLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 75 ~----~----------------------~~~----a~-~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
. . ..+ .+ ++.+..+||++||...+.+..+...|..+++-. +.+..-.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~ 172 (257)
T 3imf_A 93 GNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAV 172 (257)
T ss_dssp CCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 1 1 011 12 334467999999988776544445565533211 1111112
Q ss_pred HHH-hcCCCEEEEeccccccCCCCcccee-------eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 122 MLM-ASGIPYTIIRTGVLQNTPGGKQGFQ-------FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 122 ~l~-~~~~~~tivRp~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.+. ..+++++.|+||.+........... +..........+.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 173 e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 250 (257)
T 3imf_A 173 EWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSVPLGRLGTPEEIAGLAYYLCSDEAAYINGTCMTMDGGQ 250 (257)
T ss_dssp HHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCCc
Confidence 232 4699999999999864322111000 0011122345678999999999987654 358889888654
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-15 Score=115.61 Aligned_cols=181 Identities=10% Similarity=0.039 Sum_probs=117.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCC---ceEEEEcCCCCHHHHHHHhc-------CCCEEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGT---YVESMAGDASNKKFLKTALR-------GVRSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~---~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~ 71 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+. ++.++.+|++|++++.++++ ++|++|+
T Consensus 13 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~ 92 (280)
T 1xkq_A 13 GSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVN 92 (280)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4689999999999999999999999997653221 122 68899999999999888875 6899998
Q ss_pred cCC----Cc----h--------------------------hhhhhhcCCCeEEEeceeeeccCC-CCcccccchhHHH--
Q 028525 72 PSE----GF----I--------------------------SNAGSLKGVQHVILLSQLSVYRGS-GGIQALMKGNARK-- 114 (208)
Q Consensus 72 ~~~----~~----~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~-~~~~~~~~~~~~~-- 114 (208)
+++ +. + ...+.+.+ ++||++||...+... .+...|..+++-.
T Consensus 93 nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~~Y~asK~a~~~ 171 (280)
T 1xkq_A 93 NAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQAQPDFLYYAIAKAALDQ 171 (280)
T ss_dssp CCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSCCCSSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCCCCcccHHHHHHHHHHH
Confidence 722 11 1 01122345 799999998876543 3344455433211
Q ss_pred hHHHHHHHHHhcCCCEEEEeccccccCCCCcc-----------ce--eeecCCcCCCcccHHHHHHHHHHHhhCC-C--C
Q 028525 115 LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQ-----------GF--QFEEGCAANGSLSKEDAAFICVEALESI-P--Q 178 (208)
Q Consensus 115 ~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~-----------~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~-~--~ 178 (208)
+.+.....+...+++++.|+||++........ .. .+........+.+.+|+|++++.++.++ . .
T Consensus 172 ~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~pedvA~~v~~l~s~~~~~~~ 251 (280)
T 1xkq_A 172 YTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIILFLADRNLSFYI 251 (280)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTC
T ss_pred HHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcCcccccCc
Confidence 11111122345799999999999864321100 00 0101112234578899999999988654 2 3
Q ss_pred CCcEEEEeeCC
Q 028525 179 TGLIFEVVNGE 189 (208)
Q Consensus 179 ~~~~~~i~~~~ 189 (208)
.|+.+++.+|.
T Consensus 252 tG~~i~vdgG~ 262 (280)
T 1xkq_A 252 LGQSIVADGGT 262 (280)
T ss_dssp CSCEEEESTTG
T ss_pred cCCeEEECCCc
Confidence 58888888654
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-15 Score=114.19 Aligned_cols=183 Identities=13% Similarity=0.059 Sum_probs=122.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+..+.++.+|++|++++.++++ ++|++|++++
T Consensus 34 Gas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~ 113 (277)
T 4dqx_A 34 GGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGT 113 (277)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC
Confidence 358999999999999999999999999876322 234578999999999999988886 6899998732
Q ss_pred -Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 75 -GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 75 -~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
+. ....+++.+..+||++||...+.+..+...|..+++-. +.+.....+..
T Consensus 114 ~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~ 193 (277)
T 4dqx_A 114 TGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDHAK 193 (277)
T ss_dssp CBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCCCCChhHHHHHHHHHHHHHHHHHHhhh
Confidence 10 01123445667999999998776555555665533211 11111122334
Q ss_pred cCCCEEEEeccccccCCCC------ccce-e---eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCc
Q 028525 126 SGIPYTIIRTGVLQNTPGG------KQGF-Q---FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEE 190 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~------~~~~-~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~ 190 (208)
.+++++.|+||.+...... .... . +........+.+.+|+|++++.++.++. ..|+.+++.+|..
T Consensus 194 ~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 270 (277)
T 4dqx_A 194 EGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARAVMDRMGTAEEIAEAMLFLASDRSRFATGSILTVDGGSS 270 (277)
T ss_dssp GTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred cCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhcCcccCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCchh
Confidence 6899999999998532100 0000 0 1111222445678999999999887554 3588999986654
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-15 Score=114.65 Aligned_cols=176 Identities=9% Similarity=0.008 Sum_probs=115.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----Cc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE----GF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----~~ 76 (208)
+++|.||++++++|+++|++|++++|+.++ +.++.++.+|++|++++.++++ ++|++|++++ +.
T Consensus 15 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~ 89 (264)
T 2dtx_A 15 GASMGIGRAIAERFVDEGSKVIDLSIHDPG-----EAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGK 89 (264)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESSCCC-----SCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEecCccc-----CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 369999999999999999999999998755 3468899999999999988876 6899998732 10
Q ss_pred --------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCC
Q 028525 77 --------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGI 128 (208)
Q Consensus 77 --------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~ 128 (208)
....+.+.+.++||++||...+.+..+...|..+++-. +.+.....+... +
T Consensus 90 ~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~-i 168 (264)
T 2dtx_A 90 IESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAPL-L 168 (264)
T ss_dssp TTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHTTT-S
T ss_pred cccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCCCCchhHHHHHHHHHHHHHHHHHHhcCC-c
Confidence 01123345678999999998776544445555433211 111111112224 9
Q ss_pred CEEEEeccccccCCCCc--------c-----ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 129 PYTIIRTGVLQNTPGGK--------Q-----GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~~--------~-----~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
+++.|+||++....... . .. .+....+...+.+.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 169 ~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 246 (264)
T 2dtx_A 169 RCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFLASREASFITGTCLYVDGGL 246 (264)
T ss_dssp EEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred EEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCCc
Confidence 99999999885321100 0 00 00011122456788999999999987653 358888887654
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-15 Score=113.08 Aligned_cols=178 Identities=12% Similarity=0.113 Sum_probs=115.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----Cc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE----GF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----~~ 76 (208)
+++|.||++++++|+++|++|++++|+.++..+.. ++.++.+|++| +++.++++ ++|++|++++ +.
T Consensus 9 Gas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~--~~~~~~~D~~~-~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~ 85 (239)
T 2ekp_A 9 GGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSL--GAVPLPTDLEK-DDPKGLVKRALEALGGLHVLVHAAAVNVRKP 85 (239)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH--TCEEEECCTTT-SCHHHHHHHHHHHHTSCCEEEECCCCCCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhh--CcEEEecCCch-HHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 57999999999999999999999999987744333 37889999998 77666543 6899998732 10
Q ss_pred --------------------------hhhhhhhcCCCeEEEeceeeeccCC--CCcccccchhHHH--hHHHHHHHHHhc
Q 028525 77 --------------------------ISNAGSLKGVQHVILLSQLSVYRGS--GGIQALMKGNARK--LAEQDESMLMAS 126 (208)
Q Consensus 77 --------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~--~~~~~~~~~~~~~--~~~~~e~~l~~~ 126 (208)
....+.+.+.++||++||...+... .+...|..++.-. +.+.....+...
T Consensus 86 ~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~ 165 (239)
T 2ekp_A 86 ALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWARL 165 (239)
T ss_dssp TTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTSCCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred hhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCCCCCCccHHHHHHHHHHHHHHHHHHhhhc
Confidence 0112345678899999998877543 3344454433211 111112223346
Q ss_pred CCCEEEEeccccccCCCCc----cce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 127 GIPYTIIRTGVLQNTPGGK----QGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~~~~----~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
++++++||||++....... ... .+........+.+.+|+|++++.++.++. ..|+.+.+.+|
T Consensus 166 gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 235 (239)
T 2ekp_A 166 GIRVNLLCPGYVETEFTLPLRQNPELYEPITARIPMGRWARPEEIARVAAVLCGDEAEYLTGQAVAVDGG 235 (239)
T ss_dssp TEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CcEEEEEEeCCccCchhhccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCCCCCEEEECCC
Confidence 9999999999985432110 000 01111122345788999999999987543 35788888755
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-15 Score=113.95 Aligned_cols=180 Identities=12% Similarity=0.023 Sum_probs=117.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHh--------cCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTAL--------RGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~--------~~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.+++ .++|++|+++
T Consensus 16 Gas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~id~lv~~A 95 (260)
T 2ae2_A 16 GGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNA 95 (260)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTCCCEEEECC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCCEEEECC
Confidence 3699999999999999999999999997653221 1346889999999999998887 4689999873
Q ss_pred C----Cc----------------------hh----hhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHH-HH--
Q 028525 74 E----GF----------------------IS----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-DE-- 120 (208)
Q Consensus 74 ~----~~----------------------~~----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~e-- 120 (208)
+ +. .. ..+.+.+.++||++||...+.+..+...|..++ ...+. ++
T Consensus 96 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK--~a~~~~~~~l 173 (260)
T 2ae2_A 96 GIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATK--GAMDQLTRCL 173 (260)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCTTCHHHHHHH--HHHHHHHHHH
T ss_pred CCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCCcchHHHHH--HHHHHHHHHH
Confidence 2 11 01 113456778999999988765443444554433 21111 11
Q ss_pred -HHHHhcCCCEEEEeccccccCCC----Cccce-----eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 121 -SMLMASGIPYTIIRTGVLQNTPG----GKQGF-----QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 121 -~~l~~~~~~~tivRp~~~~~~~~----~~~~~-----~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..+...+++++.|+||.+..... ..... .+....+...+.+.+|+|++++.++.++. ..|+.+++.+|
T Consensus 174 a~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG 253 (260)
T 2ae2_A 174 AFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGG 253 (260)
T ss_dssp HHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 11223589999999998854211 00000 01111222446788999999999886543 35788888765
Q ss_pred C
Q 028525 189 E 189 (208)
Q Consensus 189 ~ 189 (208)
.
T Consensus 254 ~ 254 (260)
T 2ae2_A 254 L 254 (260)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=114.94 Aligned_cols=176 Identities=12% Similarity=0.082 Sum_probs=116.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc------CCCEEEEcCC----C--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR------GVRSIICPSE----G-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~------~~d~vi~~~~----~-- 75 (208)
+++|.||++++++|+++|++|++++|+.+ . ..+.++.+|++|++++.++++ ++|++|++++ .
T Consensus 9 GasggiG~~la~~l~~~G~~V~~~~r~~~-~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~ 82 (242)
T 1uay_A 9 GGASGLGRAAALALKARGYRVVVLDLRRE-G-----EDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGVGLAEKI 82 (242)
T ss_dssp TTTSHHHHHHHHHHHHHTCEEEEEESSCC-S-----SSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCCCCCCCCS
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEccCcc-c-----cceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEcccccCcccc
Confidence 57999999999999999999999999875 1 346899999999999999987 7899998722 0
Q ss_pred ----------ch--------------hhh----hhhcC------CCeEEEeceeeeccCCCCcccccchhHHH--hHHHH
Q 028525 76 ----------FI--------------SNA----GSLKG------VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 76 ----------~~--------------~~a----~~~~g------v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~ 119 (208)
.. .++ +.+.+ ..+||++||...+.+..+...|..+++.. +.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~l 162 (242)
T 1uay_A 83 LGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPA 162 (242)
T ss_dssp BCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCCCchhhHHHHHHHHHHHHH
Confidence 10 011 11222 23899999998776544455565433211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCc--cce--eeecCCcC-CCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGK--QGF--QFEEGCAA-NGSLSKEDAAFICVEALESIPQTGLIFEVVNGE 189 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~--~~~--~~~~~~~~-~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~ 189 (208)
...+...++++++||||.+....... ... .+...... ..+.+.+|+|++++.++.++...|+.|++.+|.
T Consensus 163 ~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~G~~~~v~gG~ 237 (242)
T 1uay_A 163 ARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPFPPRLGRPEEYAALVLHILENPMLNGEVVRLDGAL 237 (242)
T ss_dssp HHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCCSSCSCCCHHHHHHHHHHHHHCTTCCSCEEEESTTC
T ss_pred HHHHhhcCcEEEEEEeccCcchhhhccchhHHHHHHhhCCCcccCCCHHHHHHHHHHHhcCCCCCCcEEEEcCCe
Confidence 12233469999999999986432111 000 01111122 346788999999999998755568899988654
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=8.7e-15 Score=111.19 Aligned_cols=182 Identities=11% Similarity=0.054 Sum_probs=120.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+..+.++.+|++|++++.++++ +.|++|++++
T Consensus 12 Gas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~Ag 91 (247)
T 3lyl_A 12 GASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAIDILVNNAG 91 (247)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCCSEEEECCC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 469999999999999999999999999765322 124578999999999999988875 4699998732
Q ss_pred ----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 75 ----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 75 ----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
+.. ...+.+.+..+||++||...+.+..+...|..+++-. +.+.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e 171 (247)
T 3lyl_A 92 ITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYE 171 (247)
T ss_dssp CCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 110 0113345667999999987765544455565533211 11111122
Q ss_pred HHhcCCCEEEEeccccccCCCCccc----eeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQG----FQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~~----~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
+...+++++.|+||++......... ..+....+...+.+.+|+|++++.++.++. ..|+.+++.+|-
T Consensus 172 ~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG~ 244 (247)
T 3lyl_A 172 VASRNITVNVVAPGFIATDMTDKLTDEQKSFIATKIPSGQIGEPKDIAAAVAFLASEEAKYITGQTLHVNGGM 244 (247)
T ss_dssp HGGGTEEEEEEEECSBCCTTTTTSCHHHHHHHHTTSTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred HHHcCeEEEEEeeCcEecccchhccHHHHHHHhhcCCCCCCcCHHHHHHHHHHHhCCCcCCccCCEEEECCCE
Confidence 3346899999999998654322110 001122233456788999999999887554 358899987553
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-15 Score=115.32 Aligned_cols=180 Identities=12% Similarity=0.080 Sum_probs=116.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcC--CceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC--
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFG--TYVESMAGDASNKKFLKTALR-------GVRSIICPSE-- 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~--~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~-- 74 (208)
++|.||++++++|+++|++|++++|+.++..+ ... .++.++.+|++|++++.++++ ++|++|++++
T Consensus 37 as~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~ 116 (276)
T 2b4q_A 37 GSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARLDILVNNAGTS 116 (276)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCCSEEEECCCCC
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 58999999999999999999999998765322 111 168889999999999888875 6899998732
Q ss_pred --Cc--------------------------hhhhhhhcCC----CeEEEeceeeeccCCCCcc-cccchhHHH--hHHHH
Q 028525 75 --GF--------------------------ISNAGSLKGV----QHVILLSQLSVYRGSGGIQ-ALMKGNARK--LAEQD 119 (208)
Q Consensus 75 --~~--------------------------~~~a~~~~gv----~~~v~~Ss~~~~~~~~~~~-~~~~~~~~~--~~~~~ 119 (208)
+. ....+++.+. ++||++||...+.+..... .|..+++-. +.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~~~~~~Y~asK~a~~~~~~~l 196 (276)
T 2b4q_A 117 WGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRML 196 (276)
T ss_dssp CCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCCCCCccccHHHHHHHHHHHHHH
Confidence 10 0112333444 7999999988765433333 555433211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCcc--ce--eeec--CCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGKQ--GF--QFEE--GCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~~--~~--~~~~--~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
...+...+++++.|+||++........ .. .+.. ......+.+.+|+|++++.++.++. ..|+.+.+.+|
T Consensus 197 a~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 273 (276)
T 2b4q_A 197 AKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASIPMGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDGG 273 (276)
T ss_dssp HHHHGGGTEEEEEEEECCCCSTTTHHHHHCHHHHHHHHHTSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHhcccCeEEEEEEeccCcCcchhhcchhHHHHHHhhcCCCCCCcCCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence 122334689999999999864432110 00 0111 1122446688999999999987653 35788888754
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-15 Score=111.51 Aligned_cols=179 Identities=15% Similarity=0.081 Sum_probs=115.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCC-CHHHHHHHhcCCCEEEEcCC----Cc------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDAS-NKKFLKTALRGVRSIICPSE----GF------ 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~-d~~~l~~~~~~~d~vi~~~~----~~------ 76 (208)
+++|.||++++++|+++|++|++++|+.+...+. + .+.++ +|+. +.+.+.+.+.++|++|++++ +.
T Consensus 26 Gas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~-~-~~~~~-~D~~~~~~~~~~~~~~iD~lv~~Ag~~~~~~~~~~~~ 102 (249)
T 1o5i_A 26 AASRGIGRAVADVLSQEGAEVTICARNEELLKRS-G-HRYVV-CDLRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTN 102 (249)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT-C-SEEEE-CCTTTCHHHHHHHSCCCSEEEECCCCCCCBCGGGCCH
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHhh-C-CeEEE-eeHHHHHHHHHHHhcCCCEEEECCCCCCCCChhhCCH
Confidence 3699999999999999999999999997554433 2 56677 9983 34555555558999998732 10
Q ss_pred --------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCCCEEEEe
Q 028525 77 --------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGIPYTIIR 134 (208)
Q Consensus 77 --------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~~~tivR 134 (208)
....+++.+.++||++||..++.+..+...|..+++-. +.+.....+...+++++.|+
T Consensus 103 ~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~ 182 (249)
T 1o5i_A 103 EDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVA 182 (249)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEe
Confidence 01234456778999999998876544444555433211 11111122334799999999
Q ss_pred ccccccCCCCc--cce---eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 135 TGVLQNTPGGK--QGF---QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 135 p~~~~~~~~~~--~~~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
||++....... ... .+........+.+.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 183 Pg~v~t~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~i~~l~s~~~~~~tG~~~~vdgG~ 244 (249)
T 1o5i_A 183 PGWTETERVKELLSEEKKKQVESQIPMRRMAKPEEIASVVAFLCSEKASYLTGQTIVVDGGL 244 (249)
T ss_dssp ECSBCCTTHHHHSCHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred eCCCccCcccccchhhHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCc
Confidence 99986432110 000 11111222446788999999999887543 248889888654
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-14 Score=111.95 Aligned_cols=182 Identities=12% Similarity=0.079 Sum_probs=119.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCch-hhh------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKR-NAM------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~-~~~------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|+++.|+.. ... ...+.++.++.+|++|++++.++++ ++|++|+++
T Consensus 35 Gas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~id~lv~nA 114 (269)
T 4dmm_A 35 GASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNA 114 (269)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 35899999999999999999999998533 211 1124578899999999999988876 689999873
Q ss_pred C----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 E----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+ +.+ ...+.+.+..+||++||...+.+..+...|..+++-. +.+..-.
T Consensus 115 g~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~l~~~la~ 194 (269)
T 4dmm_A 115 GITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAK 194 (269)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 2 110 1123445677999999987765444445565533211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCccc-eeeecCCcCCCcccHHHHHHHHHHHhhCCC---CCCcEEEEeeCC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQG-FQFEEGCAANGSLSKEDAAFICVEALESIP---QTGLIFEVVNGE 189 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~~-~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~---~~~~~~~i~~~~ 189 (208)
.+...+++++.|+||++......... ..+........+.+.+|+|++++.++.++. ..|+.+++.+|-
T Consensus 195 e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdGG~ 266 (269)
T 4dmm_A 195 ELASRGITVNAVAPGFIATDMTSELAAEKLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGL 266 (269)
T ss_dssp HHGGGTCEEEEEEECCBTTSCSCHHHHHHHGGGCTTSSCBCHHHHHHHHHHHHHCGGGGGCCSCEEEESTTS
T ss_pred HHhhhCcEEEEEEECCCcCcccccccHHHHHhcCCCCCCCCHHHHHHHHHHHhCCcccCCCcCCEEEECCCe
Confidence 23346899999999998643322110 001111222445678999999999998753 248899987653
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-14 Score=110.21 Aligned_cols=181 Identities=14% Similarity=0.050 Sum_probs=117.1
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcC-------------chhhh------hhcCCceEEEEcCCCCHHHHHHHhc-----
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKD-------------KRNAM------ESFGTYVESMAGDASNKKFLKTALR----- 64 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~-------------~~~~~------~~~~~~v~~v~~Dl~d~~~l~~~~~----- 64 (208)
++|.||++++++|+++|++|++++|+ .++.. ...+.++.++.+|++|++++.++++
T Consensus 23 as~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 102 (280)
T 3pgx_A 23 AARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAALRELVADGMEQ 102 (280)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999983 33221 1124468899999999999988875
Q ss_pred --CCCEEEEcCC----Cch--------------------------hhhhhhcC-CCeEEEeceeeeccCCCCcccccchh
Q 028525 65 --GVRSIICPSE----GFI--------------------------SNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGN 111 (208)
Q Consensus 65 --~~d~vi~~~~----~~~--------------------------~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~ 111 (208)
++|++|++++ +.+ ...+.+.+ ..+||++||...+.+......|..++
T Consensus 103 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK 182 (280)
T 3pgx_A 103 FGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASK 182 (280)
T ss_dssp HCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCTTBHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhccCCCCchhHHHHH
Confidence 6899998732 110 01133344 56899999988776554455565533
Q ss_pred HHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCcc---------ceee----ecCCcCCCcccHHHHHHHHHHHhhCC
Q 028525 112 ARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQ---------GFQF----EEGCAANGSLSKEDAAFICVEALESI 176 (208)
Q Consensus 112 ~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~---------~~~~----~~~~~~~~~v~~~Dva~~~~~~l~~~ 176 (208)
+-. +.+.....+...+++++.|+||++........ .... ........+.+.+|+|++++.++.++
T Consensus 183 aa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~ 262 (280)
T 3pgx_A 183 HGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPPMPVQPNGFMTADEVADVVAWLAGDG 262 (280)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHHHHHHHHHHCGGGGGGSCCBTTBCSSCBCHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchhhhhhhhhcCchhhhhhhhcccCCCCCCCHHHHHHHHHHHhCcc
Confidence 211 11111122334789999999999865432210 0000 00111124678899999999988755
Q ss_pred C--CCCcEEEEeeCC
Q 028525 177 P--QTGLIFEVVNGE 189 (208)
Q Consensus 177 ~--~~~~~~~i~~~~ 189 (208)
. ..|+.+++.+|.
T Consensus 263 ~~~itG~~i~vdGG~ 277 (280)
T 3pgx_A 263 SGTLTGTQIPVDKGA 277 (280)
T ss_dssp GTTCSSCEEEESTTG
T ss_pred ccCCCCCEEEECCCc
Confidence 4 348889887654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-14 Score=110.36 Aligned_cols=167 Identities=14% Similarity=0.052 Sum_probs=108.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+..+.++.+|++|.+++.++++ .+|++|++++
T Consensus 36 Gas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag 115 (262)
T 3rkr_A 36 GASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAG 115 (262)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3599999999999999999999999998763221 24568999999999999888875 4799998732
Q ss_pred C-----ch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 75 G-----FI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 75 ~-----~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
. .. ...+.+.+..+||++||...+.+..+...|...++-. +.+....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~ 195 (262)
T 3rkr_A 116 VGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAE 195 (262)
T ss_dssp CCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 1 10 1123345677999999998776554455565533211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
.+...+++++.|+||.+....... . .........++.+|+|++++.++.++..
T Consensus 196 e~~~~gi~v~~v~PG~v~t~~~~~--~--~~~~~~~~~~~p~dvA~~v~~l~s~~~~ 248 (262)
T 3rkr_A 196 ELRQHQVRVSLVAPGSVRTEFGVG--L--SAKKSALGAIEPDDIADVVALLATQADQ 248 (262)
T ss_dssp HHGGGTCEEEEEEECCC--------------------CCCHHHHHHHHHHHHTCCTT
T ss_pred HhhhcCcEEEEEecCCCcCCcccc--c--ccccccccCCCHHHHHHHHHHHhcCccc
Confidence 233479999999999985433211 1 1111224567889999999999876553
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-14 Score=108.19 Aligned_cols=180 Identities=8% Similarity=-0.026 Sum_probs=115.0
Q ss_pred ccC-ccHHHHHHHHHhCCCcEEEEEcCchhhhh----h---cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 9 RKK-MNFRMVILSLIVKRTRIKALVKDKRNAME----S---FGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 9 ~~G-~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~---~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
++| .||++++++|+++|++|++++|+.++..+ . ...++.++.+|++|++++.++++ ..|++|+++
T Consensus 30 asg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~A 109 (266)
T 3o38_A 30 AAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNA 109 (266)
T ss_dssp CSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhCCCcEEEECC
Confidence 367 49999999999999999999999765321 1 12478999999999999988875 579999873
Q ss_pred C----Cch----------------------h----hhhhhc-CCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 74 E----GFI----------------------S----NAGSLK-GVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 74 ~----~~~----------------------~----~a~~~~-gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
+ ..+ . ..+.+. +..+||++||...+.+..+...|...++-. +.+...
T Consensus 110 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sKaa~~~~~~~la 189 (266)
T 3o38_A 110 GLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSA 189 (266)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCCCCCchHHHHHHHHHHHHHHHH
Confidence 2 110 0 112223 556899999988776554555565533211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc---c-e-eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ---G-F-QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~---~-~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..+...+++++.|+||++........ . . .+........+.+.+|+|++++.++.++. ..|+.+++.+|
T Consensus 190 ~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG 264 (266)
T 3o38_A 190 IEAVEFGVRINAVSPSIARHKFLEKTSSSELLDRLASDEAFGRAAEPWEVAATIAFLASDYSSYMTGEVVSVSSQ 264 (266)
T ss_dssp HHHGGGTEEEEEEEECCCCC-----------------CCTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred HHHHHcCcEEEEEeCCcccchhhhccCcHHHHHHHHhcCCcCCCCCHHHHHHHHHHHcCccccCccCCEEEEcCC
Confidence 22334789999999998864332110 0 0 01111222455688999999999987643 35888988765
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=112.19 Aligned_cols=183 Identities=16% Similarity=0.084 Sum_probs=120.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 15 Gas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAg 94 (280)
T 3tox_A 15 GASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAG 94 (280)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3589999999999999999999999998763221 13468899999999999988876 6899998732
Q ss_pred -----Cch--------------------------hhhhhhcCCCeEEEeceeeec-cCCCCcccccchhHHH--hHHHHH
Q 028525 75 -----GFI--------------------------SNAGSLKGVQHVILLSQLSVY-RGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 75 -----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~-~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
+.+ ...+.+.+..+||++||...+ .+..+...|..+++-. +.+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~l~~~la 174 (280)
T 3tox_A 95 ALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALA 174 (280)
T ss_dssp CCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTBCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcCCCCCchhHHHHHHHHHHHHHHHH
Confidence 110 112344566799999998876 3333344555433211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc-----ce---eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCc
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ-----GF---QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEE 190 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~-----~~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~ 190 (208)
..+...+++++.|+||.+........ .. .+........+.+.+|+|++++.++.++. ..|+++++.+|..
T Consensus 175 ~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~ 254 (280)
T 3tox_A 175 VELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGAS 254 (280)
T ss_dssp HHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccCccCCCcCHHHHHHHHHHHhCccccCCcCcEEEECCCcc
Confidence 22334689999999999865322110 00 01111122445678999999999987654 3589999986653
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=109.23 Aligned_cols=167 Identities=16% Similarity=0.107 Sum_probs=106.2
Q ss_pred cccCccHHHHHHHHHhCC--CcEEEEEcCchhhhhhc---CCceEEEEcCCCCHHHHHHHhc---------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKR--TRIKALVKDKRNAMESF---GTYVESMAGDASNKKFLKTALR---------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~---------~~d~vi~~~ 73 (208)
+++|.||++++++|+++| ++|++++|+.++..... ..++.++.+|++|++++.++++ ++|+||+++
T Consensus 10 GasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~~id~li~~A 89 (250)
T 1yo6_A 10 GANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNA 89 (250)
T ss_dssp SCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCCCEEEECC
T ss_pred cCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCCCCcEEEECC
Confidence 569999999999999999 99999999877643221 3478999999999999988887 899999872
Q ss_pred C--C---c----------------------hh----hhhhhc------C-----CCeEEEeceeeeccCC-------CCc
Q 028525 74 E--G---F----------------------IS----NAGSLK------G-----VQHVILLSQLSVYRGS-------GGI 104 (208)
Q Consensus 74 ~--~---~----------------------~~----~a~~~~------g-----v~~~v~~Ss~~~~~~~-------~~~ 104 (208)
+ . . +. ..+.+. + ..+||++||...+... .+.
T Consensus 90 g~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~~~~ 169 (250)
T 1yo6_A 90 GVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPV 169 (250)
T ss_dssp CCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTTCCSTTSSSCB
T ss_pred cccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccCCcccccccCCc
Confidence 1 1 0 00 112223 4 6799999998765432 222
Q ss_pred ccccchhHHHhHHH-HHHH---HHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC--
Q 028525 105 QALMKGNARKLAEQ-DESM---LMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ-- 178 (208)
Q Consensus 105 ~~~~~~~~~~~~~~-~e~~---l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~-- 178 (208)
..|..+ |...+. ++.+ +...+++++.||||++....... ..+++.+|+|+.++.++.++..
T Consensus 170 ~~Y~~s--K~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-----------~~~~~~~~~a~~~~~~~~~~~~~~ 236 (250)
T 1yo6_A 170 LAYRMS--KAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK-----------NAALTVEQSTAELISSFNKLDNSH 236 (250)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHTGGGTCEEEEEECCCC------------------------HHHHHHHHHHHTTCCGGG
T ss_pred cHHHHH--HHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC-----------CCCCCHHHHHHHHHHHHhcccccC
Confidence 334332 222111 1111 22358999999999875432111 2457889999999999987652
Q ss_pred CCcEEEEee
Q 028525 179 TGLIFEVVN 187 (208)
Q Consensus 179 ~~~~~~i~~ 187 (208)
.++.+.+.+
T Consensus 237 ~G~~~~~~g 245 (250)
T 1yo6_A 237 NGRFFMRNL 245 (250)
T ss_dssp TTCEEETTE
T ss_pred CCeEEEECC
Confidence 456555443
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=111.17 Aligned_cols=181 Identities=11% Similarity=0.050 Sum_probs=118.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 18 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg 97 (264)
T 3ucx_A 18 GVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNAF 97 (264)
T ss_dssp SCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred CCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence 358899999999999999999999999765322 124578999999999999988875 6799998732
Q ss_pred C-----ch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 75 G-----FI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 75 ~-----~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
. .+ ...+.+.+ .+||++||...+.+..+...|..+++-. +.+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~ 176 (264)
T 3ucx_A 98 RVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-GAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLAT 176 (264)
T ss_dssp SCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-CEEEEECCGGGGCCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEECcchhccCCCccHHHHHHHHHHHHHHHHHHH
Confidence 1 10 01123334 6999999988776544445565533211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCc-------------cce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEE
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGK-------------QGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFE 184 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~-------------~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~ 184 (208)
.+...++++..|+||++....... ... .+........+.+.+|+|++++.++.+.. ..|+.++
T Consensus 177 e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~ 256 (264)
T 3ucx_A 177 ELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGSDLKRLPTEDEVASAILFMASDLASGITGQALD 256 (264)
T ss_dssp HHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSSSSSCCBHHHHHHHHHHHHSGGGTTCCSCEEE
T ss_pred HhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhccCCcccCCCHHHHHHHHHHHcCccccCCCCCEEE
Confidence 234478999999999985421100 000 01111223456688999999999887543 3588999
Q ss_pred EeeCC
Q 028525 185 VVNGE 189 (208)
Q Consensus 185 i~~~~ 189 (208)
+.+|.
T Consensus 257 vdGG~ 261 (264)
T 3ucx_A 257 VNCGE 261 (264)
T ss_dssp ESTTS
T ss_pred ECCCc
Confidence 88654
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=114.34 Aligned_cols=197 Identities=14% Similarity=0.072 Sum_probs=124.7
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcC----------chhhh----h--hcCCceEEEEcCCCCHHHHHHHhc-------C
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKD----------KRNAM----E--SFGTYVESMAGDASNKKFLKTALR-------G 65 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~----------~~~~~----~--~~~~~v~~v~~Dl~d~~~l~~~~~-------~ 65 (208)
++|.||++++++|+++|++|++++|+ .+... + ..+.++.++.+|++|++++.++++ +
T Consensus 35 as~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 114 (322)
T 3qlj_A 35 AGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGLIQTAVETFGG 114 (322)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 58899999999999999999999987 22211 1 123468899999999999988876 7
Q ss_pred CCEEEEcCC----Cch----------------------hhh----hhhc---C---CCeEEEeceeeeccCCCCcccccc
Q 028525 66 VRSIICPSE----GFI----------------------SNA----GSLK---G---VQHVILLSQLSVYRGSGGIQALMK 109 (208)
Q Consensus 66 ~d~vi~~~~----~~~----------------------~~a----~~~~---g---v~~~v~~Ss~~~~~~~~~~~~~~~ 109 (208)
+|++|++++ +.+ .++ +... + -.+||++||...+.+..+...|..
T Consensus 115 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~a 194 (322)
T 3qlj_A 115 LDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQGNYSA 194 (322)
T ss_dssp CCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHCBTTCHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHccCCCCCccHHH
Confidence 899997732 110 011 1111 1 148999999877654444455655
Q ss_pred hhHHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCcc-ceeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEE
Q 028525 110 GNARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQ-GFQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFE 184 (208)
Q Consensus 110 ~~~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~-~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~ 184 (208)
+++-. +.+..-..+...+++++.|+|| +........ ..............+.+|+|.+++.++.... ..|+.++
T Consensus 195 sKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~~~~~~~~~~~~~pedva~~v~~L~s~~~~~itG~~i~ 273 (322)
T 3qlj_A 195 AKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEMMATQDQDFDAMAPENVSPLVVWLGSAEARDVTGKVFE 273 (322)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC--------CCTTCGGGTHHHHHHHTSGGGGGCCSCEEE
T ss_pred HHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhhhhccccccCCCCHHHHHHHHHHHhCccccCCCCCEEE
Confidence 33211 1111112233478999999999 533221111 0001111122345678999999999886544 2588888
Q ss_pred EeeCCc------------------chhhHHHHHHHHhhhc
Q 028525 185 VVNGEE------------------KVSDWKKCFSRLMEKT 206 (208)
Q Consensus 185 i~~~~~------------------~~~e~~~~~~~~~~~~ 206 (208)
+.+|.. ++.|+++.+.++++.+
T Consensus 274 vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~ 313 (322)
T 3qlj_A 274 VEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVADLLGKA 313 (322)
T ss_dssp EETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHHHHHHS
T ss_pred ECCCccccCCCcccccccCccCCCCHHHHHHHHHHHhhcc
Confidence 876542 4589999999988764
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-14 Score=109.87 Aligned_cols=181 Identities=13% Similarity=0.070 Sum_probs=117.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh-h------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA-M------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-~------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|+..+. . +..+.++.++.+|++|++++.++++ ++|++|+++
T Consensus 36 Gas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~nA 115 (271)
T 4iin_A 36 GASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDGGLSYLVNNA 115 (271)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 3589999999999999999999999965431 1 1124478999999999999988885 689999873
Q ss_pred C----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 E----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+ +. ....+++.+..+||++||...+.+..+...|..+++.. +.+....
T Consensus 116 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~ 195 (271)
T 4iin_A 116 GVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNMGQTNYSASKGGMIAMSKSFAY 195 (271)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCCCCCchHhHHHHHHHHHHHHHHHH
Confidence 2 11 01123445677999999987765544455565533211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCccc----eeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQG----FQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~~----~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+...+++++.|+||++......... ..+..........+.+|+|++++.++.++. ..|+.+++.+|
T Consensus 196 e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~i~~l~s~~~~~itG~~i~vdGG 268 (271)
T 4iin_A 196 EGALRNIRFNSVTPGFIETDMNANLKDELKADYVKNIPLNRLGSAKEVAEAVAFLLSDHSSYITGETLKVNGG 268 (271)
T ss_dssp HHHTTTEEEEEEEECSBCCC------------CGGGCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHhCcEEEEEEeCcccCCchhhhcHHHHHHHHhcCCcCCCcCHHHHHHHHHHHhCCCcCCCcCCEEEeCCC
Confidence 23346899999999998543221100 001111222456688999999999987654 35888888755
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-14 Score=111.82 Aligned_cols=169 Identities=14% Similarity=0.091 Sum_probs=109.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE- 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~- 74 (208)
++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|.+++.++++ ++|++|++++
T Consensus 39 as~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lvnnAg~ 118 (301)
T 3tjr_A 39 GASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGI 118 (301)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 589999999999999999999999998763221 23478999999999999988876 6899998732
Q ss_pred ---Cch--------------------------hhhhhhcC-CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 75 ---GFI--------------------------SNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 75 ---~~~--------------------------~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
+.+ ...+.+.+ ..+||++||...+.+..+...|..+++.. +.+.....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e 198 (301)
T 3tjr_A 119 VVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLARE 198 (301)
T ss_dssp CCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 110 01133344 56999999998776554455565533211 11111122
Q ss_pred HHhcCCCEEEEeccccccCCCCc------c--ce------eeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGK------Q--GF------QFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~------~--~~------~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
+...+++++.|+||++....... . .. .++.......+++.+|+|++++.+++.+.
T Consensus 199 ~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 199 VKPNGIGVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVSADDVARLTADAILANR 267 (301)
T ss_dssp HGGGTEEEEEECCSCCCSSHHHHHHHHC----------------------CCCHHHHHHHHHHHHHHTC
T ss_pred hcccCcEEEEEECCccccccccccccccchhhccccChhhhccccccccCCCCHHHHHHHHHHHHhcCC
Confidence 33468999999999985432100 0 00 01111112346789999999999998654
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=110.22 Aligned_cols=181 Identities=15% Similarity=0.081 Sum_probs=117.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh--hhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN--AMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~--~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++++|+.++ ..+. .+.++.++.+|++|++++.++++ ++|++|++
T Consensus 9 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~n 88 (258)
T 3a28_C 9 GGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGGFDVLVNN 88 (258)
T ss_dssp TTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTCCCEEEEC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 579999999999999999999999998765 3211 13468899999999999988876 78999987
Q ss_pred CC----Cch--------------------------hhhhhhcCC-CeEEEeceeeeccCCCCcccccchhHHH--hHHHH
Q 028525 73 SE----GFI--------------------------SNAGSLKGV-QHVILLSQLSVYRGSGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 73 ~~----~~~--------------------------~~a~~~~gv-~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~ 119 (208)
++ +.+ ...+.+.+. ++||++||...+.+..+...|..+++-. +.+..
T Consensus 89 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~l 168 (258)
T 3a28_C 89 AGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAA 168 (258)
T ss_dssp CCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCCCCchhHHHHHHHHHHHHHHH
Confidence 32 110 112334566 7999999988765444444555433211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCc-------------cce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcE
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGK-------------QGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLI 182 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~-------------~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~ 182 (208)
...+...+++++.|+||++....... ... .+........+.+.+|+|++++.++.++. ..|+.
T Consensus 169 a~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~ 248 (258)
T 3a28_C 169 AQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIALGRPSVPEDVAGLVSFLASENSNYVTGQV 248 (258)
T ss_dssp HHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCE
T ss_pred HHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhcCCCCCccCHHHHHHHHHHHhCcccCCCCCCE
Confidence 12233468999999999885321100 000 01011112345678999999999987553 35788
Q ss_pred EEEeeC
Q 028525 183 FEVVNG 188 (208)
Q Consensus 183 ~~i~~~ 188 (208)
+.+.+|
T Consensus 249 i~vdGG 254 (258)
T 3a28_C 249 MLVDGG 254 (258)
T ss_dssp EEESSS
T ss_pred EEECCC
Confidence 888755
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=110.94 Aligned_cols=183 Identities=9% Similarity=0.023 Sum_probs=121.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 19 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg 98 (256)
T 3gaf_A 19 GAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAG 98 (256)
T ss_dssp SCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 358999999999999999999999998765322 124578999999999999888876 7899998722
Q ss_pred ----Cc---------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHH
Q 028525 75 ----GF---------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 75 ----~~---------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
.. . ...+++.+..+||++||...+.+..+...|..+++-. +.+.....+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~ 178 (256)
T 3gaf_A 99 GGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDV 178 (256)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 10 0 1123455667999999998776554555565533211 111111223
Q ss_pred HhcCCCEEEEeccccccCCCC----ccc-eeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCc
Q 028525 124 MASGIPYTIIRTGVLQNTPGG----KQG-FQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEE 190 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~----~~~-~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~ 190 (208)
...++++..|+||.+...... ... ..+....+...+.+.+|+|++++.++.+.. ..|+.+++.+|..
T Consensus 179 ~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~L~s~~~~~itG~~i~vdgG~~ 252 (256)
T 3gaf_A 179 GPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKHTPLGRLGEAQDIANAALFLCSPAAAWISGQVLTVSGGGV 252 (256)
T ss_dssp GGGTEEEEEEEECCBCCHHHHHHCCHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred hhhCcEEEEEEEccccCchhhhccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCcccCccCCEEEECCCcc
Confidence 346899999999998542110 000 001111222445678999999999887543 3589999987654
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-14 Score=106.61 Aligned_cols=179 Identities=12% Similarity=0.027 Sum_probs=114.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ....++.++.+|++|++++.++++ ++|++|++++
T Consensus 7 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~ 86 (248)
T 3asu_A 7 GATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLAL 86 (248)
T ss_dssp TTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEECCCCCC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcCC
Confidence 578999999999999999999999999766432 223468899999999999999886 5799998732
Q ss_pred --Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHH-HHH---H
Q 028525 75 --GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-DES---M 122 (208)
Q Consensus 75 --~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~e~---~ 122 (208)
+.+ ...+.+.+..+||++||...+.+..+...|..+++ ..+. ++. .
T Consensus 87 ~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKa--a~~~~~~~la~e 164 (248)
T 3asu_A 87 GMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKA--FVRQFSLNLRTD 164 (248)
T ss_dssp CCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHH--HHHHHHHHHHHH
T ss_pred CCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccCCCCCchHHHHHH--HHHHHHHHHHHH
Confidence 110 01133456789999999887654444445554332 1111 111 1
Q ss_pred HHhcCCCEEEEeccccc-cCCCCcc----ceeeecCCcCCCcccHHHHHHHHHHHhhCCCC-CCcEEEEeeC
Q 028525 123 LMASGIPYTIIRTGVLQ-NTPGGKQ----GFQFEEGCAANGSLSKEDAAFICVEALESIPQ-TGLIFEVVNG 188 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~-~~~~~~~----~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~-~~~~~~i~~~ 188 (208)
+...+++++.|+||++. ....... ............+.+.+|+|++++.++.++.. .++.+.+..+
T Consensus 165 ~~~~gi~v~~v~PG~v~gT~~~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~l~s~~~~~~g~~i~v~~~ 236 (248)
T 3asu_A 165 LHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMPV 236 (248)
T ss_dssp TTTSCCEEEEEEECSBCC----------------------CCBCHHHHHHHHHHHHHSCTTCCCCEEEECCT
T ss_pred hhhcCcEEEEEeccccccCcchhhcccCchHHHHHHHhccCCCCHHHHHHHHHHHhcCCccceeeEEEEccc
Confidence 22368999999999986 3321110 00000000112346889999999999987653 4666666544
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.2e-15 Score=112.07 Aligned_cols=182 Identities=11% Similarity=0.080 Sum_probs=120.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc------CCCEEEEcCCC------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR------GVRSIICPSEG------ 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~------~~d~vi~~~~~------ 75 (208)
+++|.||++++++|+++|++|++++|+.++..+..+..+.++.+|++|++++.++++ ++|++|++++.
T Consensus 16 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~lv~nAg~~~~~~~ 95 (257)
T 3tl3_A 16 GGASGLGLATTKRLLDAGAQVVVLDIRGEDVVADLGDRARFAAADVTDEAAVASALDLAETMGTLRIVVNCAGTGNAIRV 95 (257)
T ss_dssp TTTSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECGGGSHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCchHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCCEEEECCCCCCCccc
Confidence 358999999999999999999999998777655556689999999999999998886 78999987321
Q ss_pred ------c------------------hh----hhhhh--------cCCCeEEEeceeeeccCCCCcccccchhHHH--hHH
Q 028525 76 ------F------------------IS----NAGSL--------KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAE 117 (208)
Q Consensus 76 ------~------------------~~----~a~~~--------~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~ 117 (208)
. .. ..+.+ .+-.+||++||...+.+..+...|..+++-. +.+
T Consensus 96 ~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~ 175 (257)
T 3tl3_A 96 LSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTL 175 (257)
T ss_dssp HHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCCCCCccHHHHHHHHHHHHH
Confidence 0 00 11222 2345899999988765433344455433211 111
Q ss_pred HHHHHHHhcCCCEEEEeccccccCCCCccc--e--eeecCCcC-CCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC
Q 028525 118 QDESMLMASGIPYTIIRTGVLQNTPGGKQG--F--QFEEGCAA-NGSLSKEDAAFICVEALESIPQTGLIFEVVNGE 189 (208)
Q Consensus 118 ~~e~~l~~~~~~~tivRp~~~~~~~~~~~~--~--~~~~~~~~-~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~ 189 (208)
.....+...+++++.|+||++......... . .+...... ..+.+.+|+|++++.+++++...|+.+++.+|-
T Consensus 176 ~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~r~~~p~dva~~v~~l~s~~~itG~~i~vdGG~ 252 (257)
T 3tl3_A 176 PIARDLASHRIRVMTIAPGLFDTPLLASLPEEARASLGKQVPHPSRLGNPDEYGALAVHIIENPMLNGEVIRLDGAI 252 (257)
T ss_dssp HHHHHHGGGTEEEEEEEECSBCCTTC---CHHHHHHHHHTSSSSCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTTC
T ss_pred HHHHHhcccCcEEEEEEecCccChhhhhccHHHHHHHHhcCCCCCCccCHHHHHHHHHHHhcCCCCCCCEEEECCCc
Confidence 111223346899999999998543321100 0 01111122 456688999999999998765678999887654
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-14 Score=109.11 Aligned_cols=179 Identities=9% Similarity=-0.030 Sum_probs=111.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 35 Gas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~ 114 (272)
T 4dyv_A 35 GAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGA 114 (272)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 358899999999999999999999999876432 234578999999999999998886 7899998722
Q ss_pred --Cch--------------------------hhhhhhcC--CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 75 --GFI--------------------------SNAGSLKG--VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 75 --~~~--------------------------~~a~~~~g--v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
..+ ...+.+.+ -.+||++||...+.+..+...|..+++-. +.+.....
T Consensus 115 ~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e 194 (272)
T 4dyv_A 115 PAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLD 194 (272)
T ss_dssp CSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 110 01233333 46999999988776554455565533211 11111122
Q ss_pred HHhcCCCEEEEeccccccCCCCcc--cee-eecCCcCCCcccHHHHHHHHHHHhhCCCCC-CcEEEEe
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQ--GFQ-FEEGCAANGSLSKEDAAFICVEALESIPQT-GLIFEVV 186 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~--~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~-~~~~~i~ 186 (208)
+...++++..|+||.+........ ... .........+.+.+|+|++++.++.++... ...+.+.
T Consensus 195 ~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~v~fL~s~~~~~~~~~i~i~ 262 (272)
T 4dyv_A 195 GRVHDIACGQIDIGNADTPMAQKMKAGVPQADLSIKVEPVMDVAHVASAVVYMASLPLDANVQFMTIM 262 (272)
T ss_dssp HGGGTEEEEEEEEEECC------------------------CHHHHHHHHHHHHHSCTTSCCCEEEEE
T ss_pred hCccCEEEEEEEECcccChhhhhhcccchhhhhcccccCCCCHHHHHHHHHHHhCCCCcCccceEEEe
Confidence 334689999999998854322110 000 000111234567899999999999987653 3344444
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-14 Score=112.47 Aligned_cols=181 Identities=11% Similarity=0.030 Sum_probs=114.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-----------cCCceEEEEcCCCCHHHHHHHhc-------CCCEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-----------FGTYVESMAGDASNKKFLKTALR-------GVRSI 69 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-----------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~v 69 (208)
+++|.||++++++|+++|++|++++|+.++.... .+.++.++.+|++|++++.++++ ++|+|
T Consensus 25 GasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l 104 (303)
T 1yxm_A 25 GGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFL 104 (303)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 3699999999999999999999999987653211 23468999999999999988886 48999
Q ss_pred EEcCC----Cc----------------------hhhhh----hhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHH
Q 028525 70 ICPSE----GF----------------------ISNAG----SLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAE 117 (208)
Q Consensus 70 i~~~~----~~----------------------~~~a~----~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~ 117 (208)
|++++ +. +.+++ .+.+.++||++||.. ..+......|...++.. +.+
T Consensus 105 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~~~~~~~~Y~~sK~a~~~~~~ 183 (303)
T 1yxm_A 105 VNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAGFPLAVHSGAARAGVYNLTK 183 (303)
T ss_dssp EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTCCTTCHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-ccCCCcchhhHHHHHHHHHHHH
Confidence 98733 10 01111 123356899999987 43322233443322111 111
Q ss_pred HHHHHHHhcCCCEEEEeccccccCC--CCccc---eee---ecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEee
Q 028525 118 QDESMLMASGIPYTIIRTGVLQNTP--GGKQG---FQF---EEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVN 187 (208)
Q Consensus 118 ~~e~~l~~~~~~~tivRp~~~~~~~--~~~~~---~~~---~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~ 187 (208)
.....+...++++++||||++.... ..... ... ........+.+.+|+|++++.++.++. ..|+.+++.+
T Consensus 184 ~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~g 263 (303)
T 1yxm_A 184 SLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDG 263 (303)
T ss_dssp HHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred HHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhcCcccCCCCHHHHHHHHHHHhCcccccCCCcEEEECC
Confidence 1111122358999999999986541 11100 000 001112345678999999999986543 3578899886
Q ss_pred CC
Q 028525 188 GE 189 (208)
Q Consensus 188 ~~ 189 (208)
|.
T Consensus 264 G~ 265 (303)
T 1yxm_A 264 GR 265 (303)
T ss_dssp TG
T ss_pred Ce
Confidence 64
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=8.2e-15 Score=112.52 Aligned_cols=188 Identities=14% Similarity=0.130 Sum_probs=118.6
Q ss_pred Cchhhhc-----cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------C
Q 028525 1 MGPMKKM-----KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------G 65 (208)
Q Consensus 1 ~~~~~~~-----~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~ 65 (208)
|+.|+.+ +++|.||++++++|+++|++|++++|+.++..+ ....++.++.+|++|++++.++++ .
T Consensus 1 m~~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (263)
T 2a4k_A 1 MGRLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGR 80 (263)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 6666544 469999999999999999999999999876432 223468899999999999888875 4
Q ss_pred CCEEEEcCC----Cc----------------------hhhhhhh--cCCCeEEEeceeeeccCCCCcccccchhH--HHh
Q 028525 66 VRSIICPSE----GF----------------------ISNAGSL--KGVQHVILLSQLSVYRGSGGIQALMKGNA--RKL 115 (208)
Q Consensus 66 ~d~vi~~~~----~~----------------------~~~a~~~--~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~ 115 (208)
+|++|++++ +. ..+++.. ....+||++||...+ ...+...|..+++ ..+
T Consensus 81 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-~~~~~~~Y~asK~a~~~~ 159 (263)
T 2a4k_A 81 LHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-GAFGLAHYAAGKLGVVGL 159 (263)
T ss_dssp CCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-CHHHHHHHHHCSSHHHHH
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc-CCCCcHHHHHHHHHHHHH
Confidence 699998722 11 0111111 114599999998876 3222334443321 111
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccCCCCcc-c-e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 116 AEQDESMLMASGIPYTIIRTGVLQNTPGGKQ-G-F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 116 ~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~-~-~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.+.....+...++++++|+||++........ . . .+........+.+.+|+|++++.++.++. ..|+.+.+.+|.
T Consensus 160 ~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdgG~ 239 (263)
T 2a4k_A 160 ARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPLGRAGRPEEVAQAALFLLSEESAYITGQALYVDGGR 239 (263)
T ss_dssp HHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHHhhhhCcEEEEEEeCcCcCchhhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCcCCEEEECCCc
Confidence 1111122344689999999999864322110 0 0 01011122346788999999999987553 347888887654
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=112.19 Aligned_cols=181 Identities=15% Similarity=0.081 Sum_probs=116.7
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---c---C-CceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---F---G-TYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~---~-~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
++|.||++++++|+++|++|++++|+.++..+. . + .++.++.+|++|++++.++++ ++|++|++++
T Consensus 49 as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg 128 (293)
T 3rih_A 49 GTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGALDVVCANAG 128 (293)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 588999999999999999999999998763221 1 1 468899999999998887764 5799998732
Q ss_pred ----Cc----------------------hhh----hhhhcCCCeEEEeceeeec-cCCCCcccccchhHHH--hHHHHHH
Q 028525 75 ----GF----------------------ISN----AGSLKGVQHVILLSQLSVY-RGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 75 ----~~----------------------~~~----a~~~~gv~~~v~~Ss~~~~-~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+. ..+ .+.+.+..+||++||.... ....+...|..+++-. +.+..-.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~~~~~~~~Y~asKaa~~~l~~~la~ 208 (293)
T 3rih_A 129 IFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVTGYPGWSHYGASKAAQLGFMRTAAI 208 (293)
T ss_dssp CCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTBBCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11 011 1345677899999998754 3333344555433211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCC--ccce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGG--KQGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~--~~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.+...+++++.|+||++...... .... .+........+...+|+|++++.++.++. ..|+++++.+|.
T Consensus 209 e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~ 282 (293)
T 3rih_A 209 ELAPRGVTVNAILPGNILTEGLVDMGEEYISGMARSIPMGMLGSPVDIGHLAAFLATDEAGYITGQAIVVDGGQ 282 (293)
T ss_dssp HHGGGTCEEEEEEECSBCCHHHHHTCHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHhhhCeEEEEEecCCCcCcchhhccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 23346999999999998642110 0000 01111222344578999999999886543 358899988665
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=112.41 Aligned_cols=182 Identities=16% Similarity=0.060 Sum_probs=119.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~-- 75 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++ ++|++|++++.
T Consensus 36 Gas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~ 115 (277)
T 3gvc_A 36 GAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVH 115 (277)
T ss_dssp TTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 358999999999999999999999999776332 235578999999999999888775 67999987321
Q ss_pred --c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 76 --F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 76 --~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
. ....+.+.+..+||++||...+.+..+...|..+++-. +.+.....+..
T Consensus 116 ~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~ 195 (277)
T 3gvc_A 116 LASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRS 195 (277)
T ss_dssp CBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 0 01123345667999999988776544455565533211 11111122334
Q ss_pred cCCCEEEEeccccccCCCCc-----c-cee--eec---CCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 126 SGIPYTIIRTGVLQNTPGGK-----Q-GFQ--FEE---GCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~-----~-~~~--~~~---~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.+++++.|+||.+....... . ... ... ......+.+.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 196 ~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~ 272 (277)
T 3gvc_A 196 SGIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMIARLQGRMAAPEEMAGIVVFLLSDDASMITGTTQIADGGT 272 (277)
T ss_dssp GTEEEEEEEECSBCCHHHHHHHTCC------CCHHHHHHHHHSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cCeEEEEEeeCCccCchHHHhhhcchhhHHHHhhhhhhhccccCCCCHHHHHHHHHHHcCCccCCccCcEEEECCcc
Confidence 78999999999985421100 0 000 000 0111345678999999999987553 358899988664
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-14 Score=108.20 Aligned_cols=182 Identities=10% Similarity=0.012 Sum_probs=117.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-hhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-AME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|+++.|+... ... ..+.++.++.+|++|.+++.++++ +.|++|+++
T Consensus 32 Gas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nA 111 (269)
T 3gk3_A 32 GGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADFGKVDVLINNA 111 (269)
T ss_dssp TTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 358999999999999999999999854432 211 123578999999999999988876 789999873
Q ss_pred C----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 E----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+ .. ....+.+.+..+||++||...+.+..+...|..+++-. +.+....
T Consensus 112 g~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~ 191 (269)
T 3gk3_A 112 GITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLAL 191 (269)
T ss_dssp CCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTBHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 2 10 01113345667999999987765544455565533211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCccc--e---eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQG--F---QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~~--~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.+...+++++.|+||++......... . .+........+.+.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 192 e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~ 266 (269)
T 3gk3_A 192 ETAKRGITVNTVSPGYLATAMVEAVPQDVLEAKILPQIPVGRLGRPDEVAALIAFLCSDDAGFVTGADLAINGGM 266 (269)
T ss_dssp HHGGGTEEEEEEEECSBCCTTTTC-------CCSGGGCTTSSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTS
T ss_pred HhhhcCCEEEEEecCcccchhhhhhchhHHHHHhhhcCCcCCccCHHHHHHHHHHHhCCCcCCeeCcEEEECCCE
Confidence 23346899999999998643321110 0 01111122345578999999999987654 358899988654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-14 Score=109.24 Aligned_cols=187 Identities=13% Similarity=0.109 Sum_probs=119.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 15 Gas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~ 94 (255)
T 4eso_A 15 GGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSE 94 (255)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEEEEECCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 468999999999999999999999999876432 224578999999999999887764 5799998732
Q ss_pred -Cch----------------------hhhhhh--cCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcC
Q 028525 75 -GFI----------------------SNAGSL--KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASG 127 (208)
Q Consensus 75 -~~~----------------------~~a~~~--~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~ 127 (208)
+.+ .+++.. ..-.+||++||...+.+..+...|..+++-. +.+.....+...+
T Consensus 95 ~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~g 174 (255)
T 4eso_A 95 LEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLPRG 174 (255)
T ss_dssp CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBCTTBHHHHHHHHHHHHHHHHHHHHTGGGT
T ss_pred CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCCCCchHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 110 011111 1124899999988776544455565533211 1111111223468
Q ss_pred CCEEEEeccccccCCCCcccee----------eecCCcCCCcccHHHHHHHHHHHhhCCC-CCCcEEEEeeCCc-chhh
Q 028525 128 IPYTIIRTGVLQNTPGGKQGFQ----------FEEGCAANGSLSKEDAAFICVEALESIP-QTGLIFEVVNGEE-KVSD 194 (208)
Q Consensus 128 ~~~tivRp~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~i~~~~~-~~~e 194 (208)
++++.|+||.+........... +....+.....+.+|+|++++.++.+.. ..|+.+++.+|-. ++.+
T Consensus 175 i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~itG~~i~vdGG~~~~l~~ 253 (255)
T 4eso_A 175 IRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPMKRNGTADEVARAVLFLAFEATFTTGAKLAVDGGLGQKLST 253 (255)
T ss_dssp CEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHHTCTTCCSCEEEESTTTTTTBCC
T ss_pred cEEEEEecCcccCcccccccCChhhHHHHHHHHhccCCCCCCcCHHHHHHHHHHHcCcCcCccCCEEEECCCccccCcC
Confidence 9999999999864322110000 0001122345578999999999887633 3588899886654 5444
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=111.71 Aligned_cols=181 Identities=14% Similarity=0.044 Sum_probs=118.1
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 28 as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg 107 (266)
T 4egf_A 28 ATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAG 107 (266)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHTSCSEEEEECC
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 589999999999999999999999987653221 34578999999999998888775 7899997722
Q ss_pred ----Cch--------------------------hhhhhhcC-CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 75 ----GFI--------------------------SNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 75 ----~~~--------------------------~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
..+ ...+.+.+ -.+||++||...+.+..+...|...++-. +.+....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~l~~~la~ 187 (266)
T 4egf_A 108 ISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLAR 187 (266)
T ss_dssp CCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCCCCChHHHHHHHHHHHHHHHHHH
Confidence 110 01123333 45899999998776554455565533211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCC----ccc--eeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGG----KQG--FQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~----~~~--~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.+...+++++.|+||++...... ... ..+....+...+.+.+|+|++++.++.++. ..|+.+++.+|-
T Consensus 188 e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~ 263 (266)
T 4egf_A 188 ELGPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARIPLGRFAVPHEVSDAVVWLASDAASMINGVDIPVDGGY 263 (266)
T ss_dssp HHGGGTEEEEEEEESCBCSHHHHHHTCSHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHhhhCeEEEEEEeCCCcCchhhhhccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCcEEEECCCc
Confidence 23346899999999998542110 000 001111222445678999999999887643 358889887553
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-15 Score=112.68 Aligned_cols=176 Identities=13% Similarity=0.084 Sum_probs=112.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcCC----Cc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG-------VRSIICPSE----GF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~~----~~ 76 (208)
+++|.||++++++|+++|++|++++|++++.. .+.++.+|++|++++.++++. +|++|++++ +.
T Consensus 28 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-----~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~ 102 (253)
T 2nm0_A 28 GGNRGIGLAIARAFADAGDKVAITYRSGEPPE-----GFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQL 102 (253)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-----TSEEEECCTTSHHHHHHHHHHHHHHTCSCSEEEEECSCCTTTC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc-----cceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 36999999999999999999999999876533 378899999999998888753 699997622 10
Q ss_pred ----------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCC
Q 028525 77 ----------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGI 128 (208)
Q Consensus 77 ----------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~ 128 (208)
. ...+.+.+.++||++||...+.+..+...|...++-. +.+.....+...++
T Consensus 103 ~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi 182 (253)
T 2nm0_A 103 LMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGSAGQANYAASKAGLVGFARSLARELGSRNI 182 (253)
T ss_dssp ---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSE
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcCe
Confidence 0 1123345778999999987654322233444322111 11111122334689
Q ss_pred CEEEEeccccccCCCCccc--e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 129 PYTIIRTGVLQNTPGGKQG--F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~~~~--~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+++.|+||++......... . .+........+.+.+|+|++++.++.++. ..|+.+.+.+|
T Consensus 183 ~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~i~~l~s~~~~~~tG~~i~vdGG 248 (253)
T 2nm0_A 183 TFNVVAPGFVDTDMTKVLTDEQRANIVSQVPLGRYARPEEIAATVRFLASDDASYITGAVIPVDGG 248 (253)
T ss_dssp EEEEEEECSBCC---------CHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEEEEEeCcCcCcchhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCcCcEEEECCc
Confidence 9999999987543211100 0 00011122346788999999999987653 35788888754
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=111.36 Aligned_cols=183 Identities=13% Similarity=0.090 Sum_probs=119.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEE-EcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKAL-VKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~-~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++. .|+.++..+ ..+.++.++.+|++|++++.++++ ..|++|+++
T Consensus 11 Gas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 90 (258)
T 3oid_A 11 GSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNA 90 (258)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred cCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 468999999999999999999997 777654321 123478999999999999888875 459999873
Q ss_pred C----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 E----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+ +.+ ...+++.+..+||++||...+.+..+...|..+++-. +.+....
T Consensus 91 g~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~ 170 (258)
T 3oid_A 91 ASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAV 170 (258)
T ss_dssp CCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 2 110 1123455667999999998776544455565533211 1111111
Q ss_pred HHHhcCCCEEEEeccccccCCCCccc----e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCc
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQG----F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEE 190 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~~----~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~ 190 (208)
.+...++++..|+||++......... . .+....+...+.+.+|+|++++.++.++. ..|+.+++.+|..
T Consensus 171 e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdGG~~ 247 (258)
T 3oid_A 171 ELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIKDMVDTVEFLVSSKADMIRGQTIIVDGGRS 247 (258)
T ss_dssp HTGGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHHCTTSSCBCHHHHHHHHHHHTSSTTTTCCSCEEEESTTGG
T ss_pred HHhhcCcEEEEEeeCCCcChhhhhcccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcccCCccCCEEEECCCcc
Confidence 12236899999999998543211100 0 00111122456678999999999987654 3589999987654
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.7e-15 Score=112.15 Aligned_cols=180 Identities=11% Similarity=0.094 Sum_probs=113.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh-------hhcCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM-------ESFGTYVESMAGDASNKKFLKTALRG-------VRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~-------~~~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|+.++.. ...+.++.++.+|++|++++.++++. +|++|+++
T Consensus 21 GasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~A 100 (265)
T 1h5q_A 21 GGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANA 100 (265)
T ss_dssp TTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCSEEEEEECC
T ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 35999999999999999999999999755421 11245789999999999998887753 79999873
Q ss_pred C----Cc----------------------hhh----hhhhcC-CCeEEEeceeeeccCCCC-------cccccchhHHHh
Q 028525 74 E----GF----------------------ISN----AGSLKG-VQHVILLSQLSVYRGSGG-------IQALMKGNARKL 115 (208)
Q Consensus 74 ~----~~----------------------~~~----a~~~~g-v~~~v~~Ss~~~~~~~~~-------~~~~~~~~~~~~ 115 (208)
+ +. +.+ .+.+.+ .++||++||...+....+ ...|..+ |..
T Consensus 101 g~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~Y~~s--K~a 178 (265)
T 1h5q_A 101 GVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSS--KAA 178 (265)
T ss_dssp CCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEETTEECSCHHHHHH--HHH
T ss_pred CcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccccccccccccccHHH--HHH
Confidence 2 10 001 122333 479999999876542211 2233332 221
Q ss_pred HHH-HH---HHHHhcCCCEEEEeccccccCCCCcc--ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEE
Q 028525 116 AEQ-DE---SMLMASGIPYTIIRTGVLQNTPGGKQ--GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEV 185 (208)
Q Consensus 116 ~~~-~e---~~l~~~~~~~tivRp~~~~~~~~~~~--~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i 185 (208)
.+. ++ ..+...++++++||||++........ .. .+........+.+.+|+|++++.++.++. ..|+.|++
T Consensus 179 ~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v 258 (265)
T 1h5q_A 179 CSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLNRFAQPEEMTGQAILLLSDHATYMTGGEYFI 258 (265)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEE
T ss_pred HHHHHHHHHHHHHhcCcEEEEEecCccccccccccchhHHHHHHhcCcccCCCCHHHHHHHHHhhccCchhcCcCcEEEe
Confidence 111 11 12233589999999999864321110 00 01111122346788999999999987653 35888998
Q ss_pred eeCC
Q 028525 186 VNGE 189 (208)
Q Consensus 186 ~~~~ 189 (208)
.+|.
T Consensus 259 ~gG~ 262 (265)
T 1h5q_A 259 DGGQ 262 (265)
T ss_dssp CTTG
T ss_pred cCCE
Confidence 8653
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-14 Score=109.45 Aligned_cols=183 Identities=16% Similarity=0.048 Sum_probs=115.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh----h---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM----E---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~----~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|+++.|+..... + ..+.++.++.+|++|++++.++++ ++|++|+++
T Consensus 14 Gas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~lv~~A 93 (264)
T 3i4f_A 14 AGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFGKIDFLINNA 93 (264)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred CCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 46899999999999999999999988765421 1 123468999999999999998886 789999873
Q ss_pred C------Cch----------------------h----hhhhhcCCCeEEEeceeeecc--CCCCcccccchhHHH--hHH
Q 028525 74 E------GFI----------------------S----NAGSLKGVQHVILLSQLSVYR--GSGGIQALMKGNARK--LAE 117 (208)
Q Consensus 74 ~------~~~----------------------~----~a~~~~gv~~~v~~Ss~~~~~--~~~~~~~~~~~~~~~--~~~ 117 (208)
+ ... . ..+++.+..+||++||.+.+. +..+...|..+++-. +.+
T Consensus 94 g~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~~~Y~asKaa~~~~~~ 173 (264)
T 3i4f_A 94 GPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLTK 173 (264)
T ss_dssp CCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCCCCTTCHHHHHHHHHHHHHHH
T ss_pred cccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccCCCCCCchhHHHHHHHHHHHH
Confidence 3 110 1 113556778999999885442 222233444432211 111
Q ss_pred HHHHHHHhcCCCEEEEeccccccCCCCccc----eeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCc
Q 028525 118 QDESMLMASGIPYTIIRTGVLQNTPGGKQG----FQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEE 190 (208)
Q Consensus 118 ~~e~~l~~~~~~~tivRp~~~~~~~~~~~~----~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~ 190 (208)
.....+...+++++.|+||++......... ..+........+.+.+|+|++++.++.++. ..|+.+++.+|-.
T Consensus 174 ~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdGG~~ 252 (264)
T 3i4f_A 174 TVAYEEAEYGITANMVCPGDIIGEMKEATIQEARQLKEHNTPIGRSGTGEDIARTISFLCEDDSDMITGTIIEVTGAVD 252 (264)
T ss_dssp HHHHHHGGGTEEEEEEEECCCCGGGGSCCHHHHHHC--------CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESCSCC
T ss_pred HHHHHhhhcCcEEEEEccCCccCccchhccHHHHHHHhhcCCCCCCcCHHHHHHHHHHHcCcccCCCCCcEEEEcCcee
Confidence 111223346899999999998654321110 001111122345678999999999987654 3489999986553
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.8e-14 Score=110.31 Aligned_cols=170 Identities=11% Similarity=0.048 Sum_probs=107.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCC--ceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGT--YVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~--~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++.+|+.++..+. .+. ++.++.+|++|++++.++++ ++|++|++
T Consensus 15 Gas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~lv~n 94 (319)
T 3ioy_A 15 GGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFGPVSILCNN 94 (319)
T ss_dssp TTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 4699999999999999999999999998763221 122 68999999999999988875 46999987
Q ss_pred CC----Cch--------------------------hhhhhhc------CCCeEEEeceeeeccCCCCcccccchhHHH--
Q 028525 73 SE----GFI--------------------------SNAGSLK------GVQHVILLSQLSVYRGSGGIQALMKGNARK-- 114 (208)
Q Consensus 73 ~~----~~~--------------------------~~a~~~~------gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~-- 114 (208)
++ +.+ ...+.+. +..+||++||...+.+......|..+++-.
T Consensus 95 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~~~~~~Y~aSKaal~~ 174 (319)
T 3ioy_A 95 AGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRG 174 (319)
T ss_dssp CCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCCSSSHHHHHHHHHHHH
T ss_pred CCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCCCCCHHHHHHHHHHHH
Confidence 32 110 0112222 356899999998776544445565533211
Q ss_pred hHHHHHHHHHhcCCCEEEEeccccccCCCCccce---ee-------ec---C---CcCCCcccHHHHHHHHHHHhhCCC
Q 028525 115 LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGF---QF-------EE---G---CAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 115 ~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~---~~-------~~---~---~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
+.+.....+...+++++.|+||++.......... .+ .. . ......++.+|+|+.++.+++++.
T Consensus 175 ~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~vA~~~~~al~~~~ 253 (319)
T 3ioy_A 175 LSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDKTAVERLAGVHEFGMEPDVIGARVIEAMKANR 253 (319)
T ss_dssp HHHHHHHHHGGGTCEEEEECCCCBC-----------------------------CCGGGSSBCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhcCCEEEEEEcCeEccCcccccccCchhhcccccchhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHcCC
Confidence 2221112244579999999999986432211000 00 00 0 000112688999999999998764
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-14 Score=108.96 Aligned_cols=182 Identities=13% Similarity=0.049 Sum_probs=108.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEc-Cchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVK-DKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R-~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++| +.++..+ ..+.++.++.+|++|++++.++++ ++|++|+++
T Consensus 36 Gas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA 115 (280)
T 4da9_A 36 GGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNA 115 (280)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHSCCCEEEEEC
T ss_pred cCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 35899999999999999999999996 4433211 124578999999999999888876 789999773
Q ss_pred CC------ch--------------------------hhhhhhcC---CCeEEEeceeeeccCCCCcccccchhHHH--hH
Q 028525 74 EG------FI--------------------------SNAGSLKG---VQHVILLSQLSVYRGSGGIQALMKGNARK--LA 116 (208)
Q Consensus 74 ~~------~~--------------------------~~a~~~~g---v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~ 116 (208)
+. .+ ...+.+.+ ..+||++||...+.+..+...|..+++-. +.
T Consensus 116 g~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~ 195 (280)
T 4da9_A 116 GIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFS 195 (280)
T ss_dssp C------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------CCHHHHHHHHHHHHHH
T ss_pred CccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCCCCccHHHHHHHHHHHHH
Confidence 21 00 01123333 45899999988765444445565533211 11
Q ss_pred HHHHHHHHhcCCCEEEEeccccccCCCCcc--ce--eeec-CCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 117 EQDESMLMASGIPYTIIRTGVLQNTPGGKQ--GF--QFEE-GCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 117 ~~~e~~l~~~~~~~tivRp~~~~~~~~~~~--~~--~~~~-~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
+..-..+...++++..|+||++........ .. .+.. ..+...+.+.+|+|++++.++.++. ..|+.+++.+|-
T Consensus 196 ~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 275 (280)
T 4da9_A 196 QGLALRLAETGIAVFEVRPGIIRSDMTAAVSGKYDGLIESGLVPMRRWGEPEDIGNIVAGLAGGQFGFATGSVIQADGGL 275 (280)
T ss_dssp HHHHHHHTTTTEEEEEEEECCBCC----------------------CCBCHHHHHHHHHHHHTSTTGGGTTCEEEESTTC
T ss_pred HHHHHHHHHhCcEEEEEeecCCcCCchhhcchhHHHHHhhcCCCcCCcCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 111112334689999999999864322110 00 0101 1122345578999999999987655 358899987553
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=109.30 Aligned_cols=179 Identities=15% Similarity=0.098 Sum_probs=100.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 16 Gas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag 95 (253)
T 3qiv_A 16 GSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAA 95 (253)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4699999999999999999999999987763221 24568899999999999988886 7899998732
Q ss_pred C---c------------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHH
Q 028525 75 G---F------------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 75 ~---~------------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~ 119 (208)
- . ....+.+.+..+||++||...+. +...|...++-. +.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---~~~~Y~asK~a~~~~~~~l 172 (253)
T 3qiv_A 96 IFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL---YSNYYGLAKVGINGLTQQL 172 (253)
T ss_dssp CCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--------------CCHHHHHHHHHHH
T ss_pred cCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC---CCchhHHHHHHHHHHHHHH
Confidence 1 0 01123455677999999988763 233465543211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCcc---ce--eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGKQ---GF--QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGE 189 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~~---~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~ 189 (208)
...+...+++++.|+||++........ .. .+........+.+.+|+|++++.++.++.. .|+.|++.+|.
T Consensus 173 a~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG~ 249 (253)
T 3qiv_A 173 SRELGGRNIRINAIAPGPIDTEANRTTTPKEMVDDIVKGLPLSRMGTPDDLVGMCLFLLSDEASWITGQIFNVDGGQ 249 (253)
T ss_dssp HHHTTTTTEEEEEEEC-------------------------------CCHHHHHHHHHHSGGGTTCCSCEEEC----
T ss_pred HHHHhhcCeEEEEEEecCCcccchhhcCcHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCe
Confidence 111223589999999999865322110 00 011111122344569999999998875543 58999988664
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=111.45 Aligned_cols=182 Identities=12% Similarity=0.097 Sum_probs=119.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+..+.++.+|++|++++.++++ .+|++|++++
T Consensus 31 Gas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg 110 (279)
T 3sju_A 31 GVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAG 110 (279)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence 468999999999999999999999999775322 124468999999999999888875 6799998732
Q ss_pred ----Cc----------------------hhh------hhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 75 ----GF----------------------ISN------AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 75 ----~~----------------------~~~------a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
+. ..+ .+.+.+..+||++||...+.+..+...|..+++-. +.+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la 190 (279)
T 3sju_A 111 RNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVG 190 (279)
T ss_dssp CCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCCCCChhHHHHHHHHHHHHHHHH
Confidence 11 011 13345667999999998776544455565533211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCc------c------c---eeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEE
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGK------Q------G---FQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIF 183 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~------~------~---~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~ 183 (208)
..+...+++++.|+||++....... . . ..+........+.+.+|+|++++.++.++. ..|+.+
T Consensus 191 ~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~a~~itG~~i 270 (279)
T 3sju_A 191 FELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKIPLGRYSTPEEVAGLVGYLVTDAAASITAQAL 270 (279)
T ss_dssp HHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSSGGGGCCSCEE
T ss_pred HHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCcCCcEE
Confidence 1223468999999999985321100 0 0 001111222445678999999999887654 358889
Q ss_pred EEeeCC
Q 028525 184 EVVNGE 189 (208)
Q Consensus 184 ~i~~~~ 189 (208)
++.+|-
T Consensus 271 ~vdGG~ 276 (279)
T 3sju_A 271 NVCGGL 276 (279)
T ss_dssp EESTTC
T ss_pred EECCCc
Confidence 987653
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-14 Score=109.81 Aligned_cols=181 Identities=12% Similarity=0.083 Sum_probs=120.0
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc------CCCEEEEc-CC----
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR------GVRSIICP-SE---- 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~------~~d~vi~~-~~---- 74 (208)
++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|.+++.++++ +.|++|++ ++
T Consensus 38 as~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~lv~~aag~~~~ 117 (281)
T 3ppi_A 38 GAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVA 117 (281)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEEEECCCCCCCC
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeEEEccCccccc
Confidence 58999999999999999999999999876432 235579999999999999998886 46899976 21
Q ss_pred Cch---------------------------hh----hhhh------cCCCeEEEeceeeeccCCCCcccccchhHHH--h
Q 028525 75 GFI---------------------------SN----AGSL------KGVQHVILLSQLSVYRGSGGIQALMKGNARK--L 115 (208)
Q Consensus 75 ~~~---------------------------~~----a~~~------~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~ 115 (208)
... .. .+.. .+-.+||++||...+.+..+...|..+++-. +
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~ 197 (281)
T 3ppi_A 118 QRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAYAAAKAGVIGL 197 (281)
T ss_dssp CCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHH
T ss_pred ccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccCCCCCCcccHHHHHHHHHH
Confidence 000 00 1111 2445899999998776554555565533211 1
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccCCCCc--cc--eeeecCCcC-CCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC
Q 028525 116 AEQDESMLMASGIPYTIIRTGVLQNTPGGK--QG--FQFEEGCAA-NGSLSKEDAAFICVEALESIPQTGLIFEVVNGE 189 (208)
Q Consensus 116 ~~~~e~~l~~~~~~~tivRp~~~~~~~~~~--~~--~~~~~~~~~-~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~ 189 (208)
.+.....+...+++++.|+||++....... .. ..+...... ..+.+.+|+|++++.++.++...|+.+++.+|.
T Consensus 198 ~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~v~~l~s~~~~tG~~i~vdGG~ 276 (281)
T 3ppi_A 198 TIAAARDLSSAGIRVNTIAPGTMKTPIMESVGEEALAKFAANIPFPKRLGTPDEFADAAAFLLTNGYINGEVMRLDGAQ 276 (281)
T ss_dssp HHHHHHHHGGGTEEEEEEEECSBCCHHHHTTCHHHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHCSSCCSCEEEESTTC
T ss_pred HHHHHHHHhhcCeEEEEEecCcCCchhhhcccHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHcCCCcCCcEEEECCCc
Confidence 111112233468999999999985321100 00 001111122 456788999999999998766678999988654
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-14 Score=107.75 Aligned_cols=182 Identities=12% Similarity=0.027 Sum_probs=114.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+..+.++.+|++|.+++.++++ ++|++|++++
T Consensus 16 Gas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~ 95 (261)
T 3n74_A 16 GAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVDILVNNAGIGH 95 (261)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCccCC
Confidence 358999999999999999999999999876432 335578999999999999988876 6799998722
Q ss_pred --Cch--------------------------hhhhhhcC----CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 75 --GFI--------------------------SNAGSLKG----VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 75 --~~~--------------------------~~a~~~~g----v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
... ...+.+.+ ..+||++||...+.+......|...++-. +.+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la 175 (261)
T 3n74_A 96 KPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALA 175 (261)
T ss_dssp CSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCCCCccHHHHHHHHHHHHHHHHH
Confidence 110 01122221 44799999988766544444555533211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc------ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ------GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~------~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
..+...+++++.|+||.+........ .. .+....+...+.+.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 176 ~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG~ 254 (261)
T 3n74_A 176 IELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRDSIPMGRLLKPDDLAEAAAFLCSPQASMITGVALDVDGGR 254 (261)
T ss_dssp HHHGGGTEEEEEEEEC-------------------------CTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred HHhhhcCcEEEEEecCcccChhhhhhcccCcHHHHHHHhhcCCcCCCcCHHHHHHHHHHHcCCcccCcCCcEEEecCCc
Confidence 22334689999999998754321110 00 01111222456788999999999986543 358899988654
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=110.61 Aligned_cols=176 Identities=11% Similarity=0.095 Sum_probs=111.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----Cc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE----GF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----~~ 76 (208)
+++|.||++++++|+++|++|++++|++++..+ +..+.+|++|++++.++++ ++|++|++++ +.
T Consensus 22 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-----~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~ 96 (247)
T 1uzm_A 22 GGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG-----LFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAF 96 (247)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT-----SEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECSCCC---
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH-----hcCeeccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 469999999999999999999999998765432 2248899999999888875 5799997622 10
Q ss_pred ----------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCC
Q 028525 77 ----------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGI 128 (208)
Q Consensus 77 ----------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~ 128 (208)
. ...+++.+.++||++||...+.+..+...|..++.-. +.+.....+...++
T Consensus 97 ~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi 176 (247)
T 1uzm_A 97 LMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIARELSKANV 176 (247)
T ss_dssp --CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----CCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred hhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCCCCChhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 0 1123446778999999987654333344454433211 11111122334699
Q ss_pred CEEEEeccccccCCCCc--cce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 129 PYTIIRTGVLQNTPGGK--QGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~~--~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
++++|+||++....... ... .+........+.+.+|+|++++.++.++. ..|+.+++.+|
T Consensus 177 ~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~i~vdgG 242 (247)
T 1uzm_A 177 TANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGG 242 (247)
T ss_dssp EEEEEEECSBCCHHHHHSCHHHHHHHGGGCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEEEEEeCCCcccchhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCCcCCEEEECCC
Confidence 99999999985321100 000 01111112346788999999999987543 35788888755
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.8e-14 Score=108.19 Aligned_cols=179 Identities=15% Similarity=0.117 Sum_probs=115.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----h--cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----S--FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~--~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ . .+..+.++.+|++|++++.++++ ++|++|++++
T Consensus 35 Gas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg 114 (283)
T 3v8b_A 35 GAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANAG 114 (283)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 358899999999999999999999999765322 1 13468899999999999888875 6899998722
Q ss_pred -----Cc----------------------h----hhhhhhcCCCeEEEeceeeecc--CCCCcccccchhHHHhHH-HHH
Q 028525 75 -----GF----------------------I----SNAGSLKGVQHVILLSQLSVYR--GSGGIQALMKGNARKLAE-QDE 120 (208)
Q Consensus 75 -----~~----------------------~----~~a~~~~gv~~~v~~Ss~~~~~--~~~~~~~~~~~~~~~~~~-~~e 120 (208)
+. . ...+++.+..+||++||...+. +..+...|..+++ ... .++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~~~Y~asKa--a~~~l~~ 192 (283)
T 3v8b_A 115 INGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKA--AQVAIVQ 192 (283)
T ss_dssp CCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCSTTCHHHHHHHH--HHHHHHH
T ss_pred CCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCCCCCCchHHHHHHH--HHHHHHH
Confidence 11 0 1123556778999999987654 3333444554332 111 111
Q ss_pred HH---HHhcCCCEEEEeccccccCCCCcccee--------eec---CCcC--CCcccHHHHHHHHHHHhhCCC--CCCcE
Q 028525 121 SM---LMASGIPYTIIRTGVLQNTPGGKQGFQ--------FEE---GCAA--NGSLSKEDAAFICVEALESIP--QTGLI 182 (208)
Q Consensus 121 ~~---l~~~~~~~tivRp~~~~~~~~~~~~~~--------~~~---~~~~--~~~v~~~Dva~~~~~~l~~~~--~~~~~ 182 (208)
.+ +...++++..|+||++........... ... ..+. ......+|+|++++.++.+.. ..|+.
T Consensus 193 ~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~pedvA~~v~fL~s~~a~~itG~~ 272 (283)
T 3v8b_A 193 QLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPITDGQPGRSEDVAELIRFLVSERARHVTGSP 272 (283)
T ss_dssp HHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHHHHSCCCBCTTCSCGGGTTCCBCHHHHHHHHHHHTSGGGTTCCSCE
T ss_pred HHHHHhCccCcEEEEEEeCCCcCCcccccccccchhhhhhhhhhhhcCccccCCCCCHHHHHHHHHHHcCccccCCcCCE
Confidence 11 223689999999999864332211000 000 0011 233467999999999887544 24788
Q ss_pred EEEeeC
Q 028525 183 FEVVNG 188 (208)
Q Consensus 183 ~~i~~~ 188 (208)
+++.+|
T Consensus 273 i~vdGG 278 (283)
T 3v8b_A 273 VWIDGG 278 (283)
T ss_dssp EEESTT
T ss_pred EEECcC
Confidence 888755
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-14 Score=109.52 Aligned_cols=181 Identities=11% Similarity=0.037 Sum_probs=114.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cC--CceEEEEcCCCCHHHHHHHhcCC-------CEEEEcCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FG--TYVESMAGDASNKKFLKTALRGV-------RSIICPSE- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~--~~v~~v~~Dl~d~~~l~~~~~~~-------d~vi~~~~- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .. .++.++.+|++|++++.++++.+ |++|++++
T Consensus 28 Gas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG~ 107 (272)
T 2nwq_A 28 GATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGL 107 (272)
T ss_dssp STTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCEEEECCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 4689999999999999999999999997663321 11 26889999999999999998654 99998722
Q ss_pred ----Cch--------------------------hhhhhhcCCC-eEEEeceeeeccCCCCcccccchhHHHhHHHHHHHH
Q 028525 75 ----GFI--------------------------SNAGSLKGVQ-HVILLSQLSVYRGSGGIQALMKGNARKLAEQDESML 123 (208)
Q Consensus 75 ----~~~--------------------------~~a~~~~gv~-~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l 123 (208)
+.+ ...+.+.+.. +||++||...+.+..+...|...+ ...+..-+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~~~~~~~Y~asK--aa~~~l~~~l 185 (272)
T 2nwq_A 108 ALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTK--AFVEQFSLNL 185 (272)
T ss_dssp CCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSCCTTCHHHHHHH--HHHHHHHHHH
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccCCCCCchHHHHH--HHHHHHHHHH
Confidence 110 1123455667 999999988765443344454432 2111111112
Q ss_pred H----hcCCCEEEEeccccccCCCCcc----ceeeecCCcCCCcccHHHHHHHHHHHhhCCCC-CCcEEEEeeCCc
Q 028525 124 M----ASGIPYTIIRTGVLQNTPGGKQ----GFQFEEGCAANGSLSKEDAAFICVEALESIPQ-TGLIFEVVNGEE 190 (208)
Q Consensus 124 ~----~~~~~~tivRp~~~~~~~~~~~----~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~-~~~~~~i~~~~~ 190 (208)
. ..+++++.|+||.+........ ............+.+.+|+|++++.++.++.. .++.+.+..+..
T Consensus 186 a~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~v~~l~s~~~~~~g~~i~v~~~~~ 261 (272)
T 2nwq_A 186 RCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARYDKTYAGAHPIQPEDIAETIFWIMNQPAHLNINSLEIMPVSQ 261 (272)
T ss_dssp HTTCTTSCCEEEEEEECSBC--------------------CCCCBCHHHHHHHHHHHHTSCTTEEEEEEEEEETTE
T ss_pred HHHhCccCeEEEEEEcCCCcCcchhcccccchHHHHHhhccCCCCCHHHHHHHHHHHhCCCccCccceEEEeeccC
Confidence 2 3589999999999854322110 00000000112347889999999999986543 356666665543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=111.02 Aligned_cols=164 Identities=10% Similarity=0.055 Sum_probs=108.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.++++ ++|+||++++
T Consensus 38 GasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~li~~Ag 117 (272)
T 1yb1_A 38 GAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAG 117 (272)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCCSEEEECCC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECCC
Confidence 3599999999999999999999999987653221 13468999999999999988875 6899998732
Q ss_pred ----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 75 ----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 75 ----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
+. ....+.+.+.++||++||..++.+..+...|...++.. +.+.....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~l~~~la~e 197 (272)
T 1yb1_A 118 VVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDE 197 (272)
T ss_dssp CCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 11 01123446778999999988765433333454432211 11111111
Q ss_pred HH---hcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 123 LM---ASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 123 l~---~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
+. ..++++++||||++........ . ......++.+|+|++++.++.++.
T Consensus 198 ~~~~~~~gi~v~~v~Pg~v~t~~~~~~-~-----~~~~~~~~~~dva~~i~~~~~~~~ 249 (272)
T 1yb1_A 198 LAALQITGVKTTCLCPNFVNTGFIKNP-S-----TSLGPTLEPEEVVNRLMHGILTEQ 249 (272)
T ss_dssp HHHTTCTTEEEEEEEETHHHHCSTTCT-H-----HHHCCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCCeEEEEEeCCcccCCccccc-c-----ccccCCCCHHHHHHHHHHHHHcCC
Confidence 22 2489999999998854332111 0 112346789999999999998664
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-14 Score=109.29 Aligned_cols=180 Identities=12% Similarity=0.065 Sum_probs=111.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cCCceEEEEcCCCCHHHHHHHhc---CCCEEEEcCCC----c-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FGTYVESMAGDASNKKFLKTALR---GVRSIICPSEG----F- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~---~~d~vi~~~~~----~- 76 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.++++ ++|++|++++- .
T Consensus 23 Gas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv~nAg~~~~~~~ 102 (291)
T 3rd5_A 23 GANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVLINNAGIMAVPYA 102 (291)
T ss_dssp CCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEEEECCCCCSCCCC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEEEECCcCCCCccc
Confidence 3599999999999999999999999998764332 34578999999999999999997 45999987321 0
Q ss_pred -------------------hhhhhhhcCCCeEEEeceeeeccCC-------------CCcccccchhHHH--hHHHHHHH
Q 028525 77 -------------------ISNAGSLKGVQHVILLSQLSVYRGS-------------GGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 77 -------------------~~~a~~~~gv~~~v~~Ss~~~~~~~-------------~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
+.+++.....+|||++||...+... .+...|..+++-. +.+.....
T Consensus 103 ~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e 182 (291)
T 3rd5_A 103 LTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQSKLANLLFTSELQRR 182 (291)
T ss_dssp BCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCSSSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCcccccccccCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 1122333445699999998766421 1112233322110 11111112
Q ss_pred HHhcC--CCEEEEeccccccCCCCccceeee----cCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEee
Q 028525 123 LMASG--IPYTIIRTGVLQNTPGGKQGFQFE----EGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVN 187 (208)
Q Consensus 123 l~~~~--~~~tivRp~~~~~~~~~~~~~~~~----~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~ 187 (208)
+...+ ++++.|+||.+...........+. ......-..+.+|+|+.++.++.++...|+.+.+.+
T Consensus 183 ~~~~g~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~l~~~~~~~G~~~~vdg 253 (291)
T 3rd5_A 183 LTAAGSPLRALAAHPGYSHTNLQGASGRKLGDALMSAATRVVATDADFGARQTLYAASQDLPGDSFVGPRF 253 (291)
T ss_dssp HHHTTCCCEEEEECCSGGGSCC--------------------CHHHHHHHHHHHHHHHSCCCTTCEEEETT
T ss_pred HhhCCCCEEEEEeeCCCCccccccccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCceeCCcc
Confidence 33345 999999999985433221100000 000111123579999999999988655678887753
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=111.29 Aligned_cols=178 Identities=9% Similarity=0.015 Sum_probs=115.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALRG-------VRSIICPS- 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~- 73 (208)
+++|.||++++++|+++|++|++++|+.++... ..+.++.++.+|++|++++.++++. +|+||+++
T Consensus 41 GasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~Ag 120 (279)
T 3ctm_A 41 GSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGTIDVFVANAG 120 (279)
T ss_dssp TTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECGG
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 359999999999999999999999998764221 1245688999999999999888764 89999872
Q ss_pred ---C-C----c-----------------------hhhhhhhcCCCeEEEeceeeeccC--CCCcccccchhHHHhHH-HH
Q 028525 74 ---E-G----F-----------------------ISNAGSLKGVQHVILLSQLSVYRG--SGGIQALMKGNARKLAE-QD 119 (208)
Q Consensus 74 ---~-~----~-----------------------~~~a~~~~gv~~~v~~Ss~~~~~~--~~~~~~~~~~~~~~~~~-~~ 119 (208)
. + . +...+++.+.++||++||...+.. ..+...|...+ ...+ .+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~Y~~sK--~a~~~~~ 198 (279)
T 3ctm_A 121 VTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQAPYNTAK--AACTHLA 198 (279)
T ss_dssp GSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC---CCHHHHHHHH--HHHHHHH
T ss_pred ccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCCCCCCcccHHHHH--HHHHHHH
Confidence 1 1 1 012344567889999999876543 23333444322 2211 11
Q ss_pred HHHH---HhcCCCEEEEeccccccCCCCcc--ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 120 ESML---MASGIPYTIIRTGVLQNTPGGKQ--GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 120 e~~l---~~~~~~~tivRp~~~~~~~~~~~--~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+.+- ...+ +++.|+||++........ .. .+........+.+.+|+|++++.++.++. ..|+.+++.+|
T Consensus 199 ~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdgG 275 (279)
T 3ctm_A 199 KSLAIEWAPFA-RVNTISPGYIDTDITDFASKDMKAKWWQLTPLGREGLTQELVGGYLYLASNASTFTTGSDVVIDGG 275 (279)
T ss_dssp HHHHHHTTTTC-EEEEEEECSBSSTTTSSCCHHHHHHHHHHSTTCSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHhcccC-CEEEEeccCCccccccccChHHHHHHHHhCCccCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 1111 1246 999999999865432110 00 01011122346788999999999987643 35788888755
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=108.63 Aligned_cols=181 Identities=15% Similarity=0.164 Sum_probs=119.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 13 Gas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~ 92 (247)
T 3rwb_A 13 GAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDILVNNASIVP 92 (247)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC
Confidence 468999999999999999999999999876432 235578999999999999988886 6899998732
Q ss_pred -Cc----------------------hh----hhhhhcC-CCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHHHH
Q 028525 75 -GF----------------------IS----NAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESMLM 124 (208)
Q Consensus 75 -~~----------------------~~----~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~l~ 124 (208)
.. .. ..+.+.+ ..+||++||...+.+..+...|..+++- .+.+.....+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~ 172 (247)
T 3rwb_A 93 FVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATELG 172 (247)
T ss_dssp CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 11 01 1244455 5799999998776554445556553321 11111112233
Q ss_pred hcCCCEEEEeccccccCCCC--c--cceeeecC-CcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 125 ASGIPYTIIRTGVLQNTPGG--K--QGFQFEEG-CAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~--~--~~~~~~~~-~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..+++++.|+||++...... . ....+... .......+.+|+|++++.++.++. ..|+.+++.+|
T Consensus 173 ~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG 243 (247)
T 3rwb_A 173 KYNITANAVTPGLIESDGVKASPHNEAFGFVEMLQAMKGKGQPEHIADVVSFLASDDARWITGQTLNVDAG 243 (247)
T ss_dssp GGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHHSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hcCeEEEEEeeCcCcCccccccChhHHHHHHhcccccCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 47999999999998532110 0 00000000 122345678999999999887653 35788888755
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.8e-14 Score=106.06 Aligned_cols=169 Identities=11% Similarity=0.064 Sum_probs=110.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 14 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~lv~nAg 93 (247)
T 2jah_A 14 GASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAG 93 (247)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4699999999999999999999999987653221 13468899999999999988875 6899998732
Q ss_pred ----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHH
Q 028525 75 ----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESM 122 (208)
Q Consensus 75 ----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 122 (208)
+. ....+.+.+ .+||++||...+.+..+...|..+++- .+.+.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e 172 (247)
T 2jah_A 94 IMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQE 172 (247)
T ss_dssp CCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 11 011233455 799999998876544444455543321 111112233
Q ss_pred HHhcCCCEEEEeccccccCCCCcc--c-e--eeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQ--G-F--QFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~--~-~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
+...+++++.|+||++........ . . .+.......++.+.+|+|++++.++.++.
T Consensus 173 ~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~v~~l~s~~~ 232 (247)
T 2jah_A 173 VTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQRISQIRKLQAQDIAEAVRYAVTAPH 232 (247)
T ss_dssp HGGGTCEEEEEEECSBSSSGGGGCCCHHHHHHHHHHTTTSCCBCHHHHHHHHHHHHHSCT
T ss_pred hcccCcEEEEEECCCCCCcchhcccchhhHHHHHhcccccCCCCHHHHHHHHHHHhCCCc
Confidence 445799999999999854321110 0 0 00000011124789999999999998654
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=110.21 Aligned_cols=181 Identities=12% Similarity=0.023 Sum_probs=115.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEc-Cchhhhhh---c----CCceEEEEcCCCCH----HHHHHHhc-------CCCE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVK-DKRNAMES---F----GTYVESMAGDASNK----KFLKTALR-------GVRS 68 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R-~~~~~~~~---~----~~~v~~v~~Dl~d~----~~l~~~~~-------~~d~ 68 (208)
+++|.||++++++|+++|++|++++| +.++..+. . +.++.++.+|++|+ +++.++++ ++|+
T Consensus 18 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~~g~id~ 97 (276)
T 1mxh_A 18 GGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDV 97 (276)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHHHHhcCCCCE
Confidence 46999999999999999999999999 76543211 1 45688999999999 88888775 7899
Q ss_pred EEEcCC----C------------------c---------------hhhhhhh---cCC------CeEEEeceeeeccCCC
Q 028525 69 IICPSE----G------------------F---------------ISNAGSL---KGV------QHVILLSQLSVYRGSG 102 (208)
Q Consensus 69 vi~~~~----~------------------~---------------~~~a~~~---~gv------~~~v~~Ss~~~~~~~~ 102 (208)
+|++++ . . +.+++.. .+. .+||++||...+.+..
T Consensus 98 lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 177 (276)
T 1mxh_A 98 LVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLP 177 (276)
T ss_dssp EEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGGGGSCCT
T ss_pred EEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEECchhhcCCCC
Confidence 998732 1 0 0011111 344 7999999988776544
Q ss_pred CcccccchhHHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCcc-ce--eeecCCcCCC-cccHHHHHHHHHHHhhCC
Q 028525 103 GIQALMKGNARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQ-GF--QFEEGCAANG-SLSKEDAAFICVEALESI 176 (208)
Q Consensus 103 ~~~~~~~~~~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~-~~--~~~~~~~~~~-~v~~~Dva~~~~~~l~~~ 176 (208)
+...|..+++-. +.+.....+...+++++.|+||.+... .... .. .+........ +.+.+|+|++++.++.++
T Consensus 178 ~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~~~~~~~~~~~~~~p~~r~~~~~~dva~~v~~l~s~~ 256 (276)
T 1mxh_A 178 GFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-PAMPQETQEEYRRKVPLGQSEASAAQIADAIAFLVSKD 256 (276)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-SSSCHHHHHHHHTTCTTTSCCBCHHHHHHHHHHHHSGG
T ss_pred CCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-ccCCHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCcc
Confidence 444555533211 111111223346999999999998654 2100 00 0101111223 678999999999998754
Q ss_pred CC--CCcEEEEeeCC
Q 028525 177 PQ--TGLIFEVVNGE 189 (208)
Q Consensus 177 ~~--~~~~~~i~~~~ 189 (208)
.. .|+.+++.+|-
T Consensus 257 ~~~~tG~~~~vdgG~ 271 (276)
T 1mxh_A 257 AGYITGTTLKVDGGL 271 (276)
T ss_dssp GTTCCSCEEEESTTG
T ss_pred ccCccCcEEEECCch
Confidence 32 47888887553
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=110.63 Aligned_cols=180 Identities=12% Similarity=0.038 Sum_probs=114.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 14 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~nAg 93 (262)
T 1zem_A 14 GAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAG 93 (262)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 4689999999999999999999999987653221 13468899999999998887775 6899998732
Q ss_pred ---C--ch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHH
Q 028525 75 ---G--FI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDES 121 (208)
Q Consensus 75 ---~--~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~ 121 (208)
. .+ ...+.+.+..+||++||...+.+......|..+++- .+.+....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~ 173 (262)
T 1zem_A 94 YQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAAL 173 (262)
T ss_dssp CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCTTBHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCCCchHHHHHHHHHHHHHHHHH
Confidence 1 00 012334567799999998776544344455543321 11111122
Q ss_pred HHHhcCCCEEEEeccccccCCCCc-----------------cc-e-e-eecCCcCCCcccHHHHHHHHHHHhhCCC--CC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGK-----------------QG-F-Q-FEEGCAANGSLSKEDAAFICVEALESIP--QT 179 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~-----------------~~-~-~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~ 179 (208)
.+...+++++.|+||++....... .. . . +....+...+.+.+|+|++++.++.++. ..
T Consensus 174 e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~it 253 (262)
T 1zem_A 174 DLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMT 253 (262)
T ss_dssp HHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTSTTSSCBCGGGSHHHHHHHHSGGGTTCC
T ss_pred HHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCcC
Confidence 234579999999999874321100 00 0 0 0001112334577999999999887543 24
Q ss_pred CcEEEEee
Q 028525 180 GLIFEVVN 187 (208)
Q Consensus 180 ~~~~~i~~ 187 (208)
|+.+.+.+
T Consensus 254 G~~i~vdG 261 (262)
T 1zem_A 254 GVNLPIAG 261 (262)
T ss_dssp SCEEEESC
T ss_pred CcEEecCC
Confidence 77777654
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-14 Score=110.02 Aligned_cols=181 Identities=10% Similarity=0.064 Sum_probs=118.7
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE- 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~- 74 (208)
++|.||++++++|+++|++|++++|+.++..+ ..+..+..+.+|++|++++.++++ ++|++|++++
T Consensus 36 as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 115 (270)
T 3ftp_A 36 ASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGALNVLVNNAGI 115 (270)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 58899999999999999999999998765321 123468899999999999988876 6899998732
Q ss_pred ---Cc----------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHH
Q 028525 75 ---GF----------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 75 ---~~----------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
+. + ...+.+.+..+||++||...+.+..+...|..+++-. +.+.....+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~ 195 (270)
T 3ftp_A 116 TQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREI 195 (270)
T ss_dssp CCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 10 0 1122345567999999987765544455565533211 111111223
Q ss_pred HhcCCCEEEEeccccccCCCCc---cc-eeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGK---QG-FQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~---~~-~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
...+++++.|+||++....... .. ..+........+.+.+|+|++++.++..+. ..|+.+++.+|.
T Consensus 196 ~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 267 (270)
T 3ftp_A 196 GSRGITVNCVAPGFIDTDMTKGLPQEQQTALKTQIPLGRLGSPEDIAHAVAFLASPQAGYITGTTLHVNGGM 267 (270)
T ss_dssp GGGTEEEEEEEECSBCSHHHHHSCHHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred hhhCeEEEEEEeCCCcCcchhhcCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCCcCCccCcEEEECCCc
Confidence 3468999999999885321100 00 001111223445688999999999886443 358899988654
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.4e-14 Score=107.92 Aligned_cols=180 Identities=15% Similarity=0.115 Sum_probs=114.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcC------------chhhh------hhcCCceEEEEcCCCCHHHHHHHhc-----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKD------------KRNAM------ESFGTYVESMAGDASNKKFLKTALR----- 64 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~------------~~~~~------~~~~~~v~~v~~Dl~d~~~l~~~~~----- 64 (208)
+++|.||++++++|+++|++|++++|+ .++.. ...+.++.++.+|++|++++.++++
T Consensus 20 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 99 (278)
T 3sx2_A 20 GAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLSAALQAGLDE 99 (278)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999999987 22211 1124578999999999999998886
Q ss_pred --CCCEEEEcCCC----c------------------h----hhhhhhcC-CCeEEEeceeeeccCC----CCcccccchh
Q 028525 65 --GVRSIICPSEG----F------------------I----SNAGSLKG-VQHVILLSQLSVYRGS----GGIQALMKGN 111 (208)
Q Consensus 65 --~~d~vi~~~~~----~------------------~----~~a~~~~g-v~~~v~~Ss~~~~~~~----~~~~~~~~~~ 111 (208)
++|++|++++- . . ...+.+.+ ..+||++||...+... .+...|..++
T Consensus 100 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~Y~asK 179 (278)
T 3sx2_A 100 LGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAK 179 (278)
T ss_dssp HCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCCCSSHHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCccCCCCchHhHHHH
Confidence 78999987321 0 0 11133333 5689999998765432 1222344322
Q ss_pred HHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCccc----e-----------eeecCCcCCCcccHHHHHHHHHHHhh
Q 028525 112 ARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQG----F-----------QFEEGCAANGSLSKEDAAFICVEALE 174 (208)
Q Consensus 112 ~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~----~-----------~~~~~~~~~~~v~~~Dva~~~~~~l~ 174 (208)
+-. +.+.....+...+++++.|+||++......... . .+....+ ..+.+.+|+|++++.++.
T Consensus 180 aa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~p~dvA~~v~~l~s 258 (278)
T 3sx2_A 180 HGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNAMP-VEVLAPEDVANAVAWLVS 258 (278)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHHHHHHHCC--CTTSCSSS-CSSBCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhhHHHHHhhccchhhhhhhhhhhcC-cCcCCHHHHHHHHHHHhC
Confidence 111 111111223346899999999998654322100 0 0011111 355678999999999987
Q ss_pred CCC--CCCcEEEEeeC
Q 028525 175 SIP--QTGLIFEVVNG 188 (208)
Q Consensus 175 ~~~--~~~~~~~i~~~ 188 (208)
++. ..|+.+++.+|
T Consensus 259 ~~~~~itG~~i~vdGG 274 (278)
T 3sx2_A 259 DQARYITGVTLPVDAG 274 (278)
T ss_dssp GGGTTCCSCEEEESTT
T ss_pred cccccccCCEEeECCC
Confidence 543 35888988755
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=110.77 Aligned_cols=182 Identities=10% Similarity=-0.002 Sum_probs=118.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh-------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME-------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~-------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++ ++|++|+++
T Consensus 34 Gas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 113 (277)
T 4fc7_A 34 GGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCA 113 (277)
T ss_dssp TTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 358899999999999999999999999765321 124578999999999999888875 689999873
Q ss_pred CC----ch----------------------hh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 EG----FI----------------------SN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~~----~~----------------------~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+. .. .+ .+.+.+..+||++||...+.+......|..+++-. +.+....
T Consensus 114 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~ 193 (277)
T 4fc7_A 114 AGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAV 193 (277)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 31 10 01 12334556999999987765444444555433211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCC-----ccc-e-eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGG-----KQG-F-QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~-----~~~-~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.+...++++..|+||++...... ... . .+........+.+.+|+|++++.++.+.. ..|+.+++.+|.
T Consensus 194 e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~fL~s~~~~~itG~~i~vdGG~ 270 (277)
T 4fc7_A 194 EWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVLYLASPLASYVTGAVLVADGGA 270 (277)
T ss_dssp HHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTH
T ss_pred HhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhccCCCCCCcCHHHHHHHHHHHcCCccCCcCCCEEEECCCc
Confidence 23346899999999998643110 000 0 01111222445678999999999987543 358889888664
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-14 Score=107.51 Aligned_cols=170 Identities=11% Similarity=-0.011 Sum_probs=105.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc------CCCEEEEcCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR------GVRSIICPSE- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~------~~d~vi~~~~- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.++++ +.|++|++++
T Consensus 14 Gas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id~lv~nAg~ 93 (252)
T 3h7a_A 14 GAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLEVTIFNVGA 93 (252)
T ss_dssp CCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCceEEEECCCc
Confidence 4689999999999999999999999998763221 24578999999999999998886 5799998732
Q ss_pred ---Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHH
Q 028525 75 ---GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 75 ---~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
+. ....+++.+..+||++||...+.+..+...|..+++-. +.+.....+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~ 173 (252)
T 3h7a_A 94 NVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMAREL 173 (252)
T ss_dssp CCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 11 01123455667999999988776544455565533211 111111223
Q ss_pred HhcCCCE-EEEeccccccCCCCcc-cee---eecCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 124 MASGIPY-TIIRTGVLQNTPGGKQ-GFQ---FEEGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 124 ~~~~~~~-tivRp~~~~~~~~~~~-~~~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
...++++ +.|+||.+........ ... +.... ..+..+.+|+|++++.++.++..
T Consensus 174 ~~~gi~v~n~v~PG~v~T~~~~~~~~~~~~~~~~~~-~~~~~~pedvA~~~~~l~s~~~~ 232 (252)
T 3h7a_A 174 MPKNIHVAHLIIDSGVDTAWVRERREQMFGKDALAN-PDLLMPPAAVAGAYWQLYQQPKS 232 (252)
T ss_dssp GGGTEEEEEEEEC----------------------------CCHHHHHHHHHHHHHCCGG
T ss_pred hhcCCEEEEEecCCccCChhhhccchhhhhhhhhcC-CccCCCHHHHHHHHHHHHhCchh
Confidence 3468999 8999998854322111 000 11111 12377889999999999986653
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=111.42 Aligned_cols=175 Identities=9% Similarity=-0.003 Sum_probs=107.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCC----CEEEEcCC--C---c--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGV----RSIICPSE--G---F-- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~----d~vi~~~~--~---~-- 76 (208)
+++|.||++++++|+++|++|++++|+.++... . +.+|++|++++.++++.+ |++|++++ . .
T Consensus 8 Gas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~------~-~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~~~~~~~ 80 (257)
T 1fjh_A 8 GCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA------D-LSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLG 80 (257)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC------C-TTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCTTCSSHH
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc------c-cccCCCCHHHHHHHHHHhCCCCCEEEECCCCCCCcccHH
Confidence 579999999999999999999999998765431 1 678999999999998654 99998732 1 1
Q ss_pred ----------------hhhhhhhcCCCeEEEeceeeeccC----------------------------CCCcccccchhH
Q 028525 77 ----------------ISNAGSLKGVQHVILLSQLSVYRG----------------------------SGGIQALMKGNA 112 (208)
Q Consensus 77 ----------------~~~a~~~~gv~~~v~~Ss~~~~~~----------------------------~~~~~~~~~~~~ 112 (208)
....+.+.+.++||++||...+.. ..+...|..++.
T Consensus 81 ~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 160 (257)
T 1fjh_A 81 NVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKN 160 (257)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhhhhhcccCCCCccHHHHHHH
Confidence 011234566789999999887621 111122322221
Q ss_pred HH--hHHHHHHHHHhcCCCEEEEeccccccCCCCcc---ce--eeec--CCcCCCcccHHHHHHHHHHHhhCCC--CCCc
Q 028525 113 RK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQ---GF--QFEE--GCAANGSLSKEDAAFICVEALESIP--QTGL 181 (208)
Q Consensus 113 ~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~---~~--~~~~--~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~ 181 (208)
.. +.+.....+...+++++.|+||.+........ .. .+.. ......+.+.+|+|++++.++..+. ..|+
T Consensus 161 a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~tG~ 240 (257)
T 1fjh_A 161 ALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPPMGRRAEPSEMASVIAFLMSPAASYVHGA 240 (257)
T ss_dssp HHHHHHHHTHHHHHHTTCEEEEEEECC---------------------CCCSTTSCCCTHHHHHHHHHHTSGGGTTCCSC
T ss_pred HHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhccchhHHHHHHhcccccCCCCCHHHHHHHHHHHhCchhcCCcCC
Confidence 00 11111112334689999999999864322111 00 0000 1112345788999999999987653 3478
Q ss_pred EEEEeeCC
Q 028525 182 IFEVVNGE 189 (208)
Q Consensus 182 ~~~i~~~~ 189 (208)
.+.+.+|.
T Consensus 241 ~~~vdgG~ 248 (257)
T 1fjh_A 241 QIVIDGGI 248 (257)
T ss_dssp EEEESTTH
T ss_pred EEEECCCc
Confidence 88887553
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.4e-14 Score=108.88 Aligned_cols=181 Identities=16% Similarity=0.148 Sum_probs=114.8
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchh--h------hhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRN--A------MESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~--~------~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
++|.||++++++|+++|++|++..|+.+. . .+..+.++.++.+|++|++++.++++ ++|++|+++
T Consensus 57 as~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nA 136 (294)
T 3r3s_A 57 GDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALGGLDILALVA 136 (294)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHTCCCEEEECC
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 58999999999999999999999887332 1 11224578899999999999888774 689999872
Q ss_pred C-----Cch----------------------hhhhhhc--CCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 74 E-----GFI----------------------SNAGSLK--GVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 74 ~-----~~~----------------------~~a~~~~--gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
+ ..+ .+++... .-.+||++||...+.+......|..+++-. +.+.....
T Consensus 137 g~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e 216 (294)
T 3r3s_A 137 GKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQ 216 (294)
T ss_dssp CCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 2 110 1111111 124899999998876554455565533211 11111122
Q ss_pred HHhcCCCEEEEeccccccCC---C-Cccce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 123 LMASGIPYTIIRTGVLQNTP---G-GKQGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~---~-~~~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
+...+++++.|+||++.... . ..... .+........+.+.+|+|++++.++.++. ..|+++++.+|.
T Consensus 217 ~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 291 (294)
T 3r3s_A 217 VAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGE 291 (294)
T ss_dssp HGGGTCEEEEEEECSBCSHHHHTTTSCGGGSTTTTTTSTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HhhcCeEEEEEecCcCccccccccCCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 33469999999999986422 0 00000 01111122345677999999999887554 348899988653
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=111.70 Aligned_cols=181 Identities=15% Similarity=0.089 Sum_probs=119.8
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE- 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~- 74 (208)
++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 34 as~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~ 113 (271)
T 4ibo_A 34 SSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGIDVDILVNNAGI 113 (271)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCCCCEEEECCCC
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC
Confidence 589999999999999999999999987763221 24578899999999999998886 6899998732
Q ss_pred ---Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHH
Q 028525 75 ---GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 75 ---~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
+.+ ...+.+.+..+||++||.....+..+...|...++-. +.+..-..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~ 193 (271)
T 4ibo_A 114 QFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARATVAPYTVAKGGIKMLTRAMAAEW 193 (271)
T ss_dssp CCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 110 1123445667999999988765544455565533211 111111223
Q ss_pred HhcCCCEEEEeccccccCCCCcc----ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQ----GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~----~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
...++++..|+||.+........ .. .+....+...+.+.+|+|++++.++..+. ..|+.+++.+|.
T Consensus 194 ~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~ 267 (271)
T 4ibo_A 194 AQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTPAKRWGKPQELVGTAVFLSASASDYVNGQIIYVDGGM 267 (271)
T ss_dssp GGGTEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHHSTTCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred hhhCeEEEEEEeccEeCcchhhcccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCcEEEECCCe
Confidence 34789999999999854321110 00 01111222445678999999998887543 358899988664
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=106.41 Aligned_cols=179 Identities=12% Similarity=-0.012 Sum_probs=111.5
Q ss_pred CccHHHHHHHHHhCCCcEEEEEcCch---hhhhhc--CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----
Q 028525 11 KMNFRMVILSLIVKRTRIKALVKDKR---NAMESF--GTYVESMAGDASNKKFLKTALR-------GVRSIICPSE---- 74 (208)
Q Consensus 11 G~iG~~l~~~Ll~~g~~V~~~~R~~~---~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~---- 74 (208)
|.||++++++|+++|++|++++|+.+ ...+.. ..++.++.+|++|++++.++++ ++|++|++++
T Consensus 33 ~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~ 112 (285)
T 2p91_A 33 RSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWGSLDIIVHSIAYAPK 112 (285)
T ss_dssp TSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSCCCEEEECCCCCCG
T ss_pred CcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCc
Confidence 79999999999999999999999874 111111 1247889999999999988875 6799998722
Q ss_pred ----Cch----------------------hhhhhhc---CCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHH
Q 028525 75 ----GFI----------------------SNAGSLK---GVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 75 ----~~~----------------------~~a~~~~---gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
+.+ .+++... .-.+||++||...+.+..+...|..+++-. +.+.....+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~ 192 (285)
T 2p91_A 113 EEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVVPHYNVMGIAKAALESTVRYLAYDI 192 (285)
T ss_dssp GGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBCTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 110 0111111 236999999987665433344454433211 111111223
Q ss_pred HhcCCCEEEEeccccccCCCCccc-e-e----eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQG-F-Q----FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~~-~-~----~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
...+++++.|+||.+......... . . +..........+.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 193 ~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgg~ 266 (285)
T 2p91_A 193 AKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPFGKPITIEDVGDTAVFLCSDWARAITGEVVHVDNGY 266 (285)
T ss_dssp HTTTCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred cccCcEEEEEEeCcccCchhhcccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCcccCCCCCEEEECCCc
Confidence 346899999999998653321100 0 0 0001112335678999999999986543 247888888664
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-14 Score=108.70 Aligned_cols=182 Identities=12% Similarity=0.072 Sum_probs=118.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh---hh--hcCCceEEEEcCCCCHHHHHHHhc------CCCEEEEcCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA---ME--SFGTYVESMAGDASNKKFLKTALR------GVRSIICPSE-- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~---~~--~~~~~v~~v~~Dl~d~~~l~~~~~------~~d~vi~~~~-- 74 (208)
+++|.||++++++|+++|++|++++|+.... .+ ..+.++.++.+|++|.+++.++.+ ++|++|++++
T Consensus 38 Gas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD~lv~nAg~~ 117 (273)
T 3uf0_A 38 GAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRVDVLVNNAGII 117 (273)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCCcEEEECCCCC
Confidence 3589999999999999999999999875321 11 123468899999999998877754 6899998732
Q ss_pred --Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHH
Q 028525 75 --GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLM 124 (208)
Q Consensus 75 --~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~ 124 (208)
+.+ ...+.+.+..+||++||...+.+..+...|..+++-. +.+.....+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~ 197 (273)
T 3uf0_A 118 ARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWA 197 (273)
T ss_dssp CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Confidence 110 1123456778999999998776554555565533211 1111112233
Q ss_pred hcCCCEEEEeccccccCCCCc----cce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 125 ASGIPYTIIRTGVLQNTPGGK----QGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~----~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
..++++..|+||++....... ... .+........+.+.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 198 ~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~v~~L~s~~a~~itG~~i~vdGG~ 270 (273)
T 3uf0_A 198 GRGVGVNALAPGYVVTANTAALRADDERAAEITARIPAGRWATPEDMVGPAVFLASDAASYVHGQVLAVDGGW 270 (273)
T ss_dssp GGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHHSTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred hcCcEEEEEEeCCCcCCchhhcccCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCCcCCEEEECcCc
Confidence 478999999999986432110 000 01111222455678999999999887643 358899988654
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=106.44 Aligned_cols=181 Identities=14% Similarity=0.112 Sum_probs=110.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEE-EcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKAL-VKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~-~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|+++ .|+.+.... ..+.++.++.+|++|.+++.++++ ++|++|+++
T Consensus 33 Gas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nA 112 (272)
T 4e3z_A 33 GGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNA 112 (272)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 369999999999999999999887 555543221 124578999999999999988875 679999872
Q ss_pred C-----Cch----------------------hh----hhhh---cCCCeEEEeceeeeccCCC-CcccccchhHHH--hH
Q 028525 74 E-----GFI----------------------SN----AGSL---KGVQHVILLSQLSVYRGSG-GIQALMKGNARK--LA 116 (208)
Q Consensus 74 ~-----~~~----------------------~~----a~~~---~gv~~~v~~Ss~~~~~~~~-~~~~~~~~~~~~--~~ 116 (208)
+ ..+ .. .+.+ .+..+||++||...+.... ....|..+++-. +.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~~~ 192 (272)
T 4e3z_A 113 GIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAAIDTFT 192 (272)
T ss_dssp CCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCTTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCCCCcchhHHHHHHHHHHH
Confidence 2 110 00 1111 1356899999987654332 333455433211 11
Q ss_pred HHHHHHHHhcCCCEEEEeccccccCCCCccc-----eeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 117 EQDESMLMASGIPYTIIRTGVLQNTPGGKQG-----FQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 117 ~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+.....+...+++++.|+||.+......... ..+........+.+.+|+|++++.++.++. ..|+.|++.+|
T Consensus 193 ~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~edvA~~i~~l~s~~~~~~tG~~i~vdgG 271 (272)
T 4e3z_A 193 IGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDRAREMAPSVPMQRAGMPEEVADAILYLLSPSASYVTGSILNVSGG 271 (272)
T ss_dssp HHHHHHHGGGTEEEEEEEECSBC------------------CCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHcCcEEEEEecCCCcCCcccccCChHHHHHHhhcCCcCCCcCHHHHHHHHHHHhCCccccccCCEEeecCC
Confidence 1111223346899999999998653321100 001111222345568999999999987544 34888998755
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-13 Score=105.56 Aligned_cols=179 Identities=16% Similarity=0.079 Sum_probs=109.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCch-----hh---h---hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKR-----NA---M---ESFGTYVESMAGDASNKKFLKTALR-------GVRSI 69 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~-----~~---~---~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~v 69 (208)
+++|.||++++++|+++|++|++.+|+.. +. . ...+.++.++.+|++|++++.++++ ++|++
T Consensus 12 Gas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~iD~l 91 (324)
T 3u9l_A 12 GASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIGEDGRIDVL 91 (324)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCCEE
Confidence 46999999999999999999999998732 11 1 1124578999999999999999887 78999
Q ss_pred EEcCC----Cc----------------------hhh----hhhhcCCCeEEEeceeeeccC-CCCcccccchhHHH--hH
Q 028525 70 ICPSE----GF----------------------ISN----AGSLKGVQHVILLSQLSVYRG-SGGIQALMKGNARK--LA 116 (208)
Q Consensus 70 i~~~~----~~----------------------~~~----a~~~~gv~~~v~~Ss~~~~~~-~~~~~~~~~~~~~~--~~ 116 (208)
|++++ +. ..+ .+++.+.++||++||...... ......|..+++-. +.
T Consensus 92 VnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~~~~~~~Y~asKaa~~~~~ 171 (324)
T 3u9l_A 92 IHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAAMDAIA 171 (324)
T ss_dssp EECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCCSSCHHHHHHHHHHHHHH
T ss_pred EECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCCCCcchhHHHHHHHHHHHH
Confidence 98733 11 011 235567889999999877632 22334455533211 11
Q ss_pred HHHHHHHHhcCCCEEEEeccccccCCCC----cccee------eec-CCc-------------CCCcccHHHHHHHHHHH
Q 028525 117 EQDESMLMASGIPYTIIRTGVLQNTPGG----KQGFQ------FEE-GCA-------------ANGSLSKEDAAFICVEA 172 (208)
Q Consensus 117 ~~~e~~l~~~~~~~tivRp~~~~~~~~~----~~~~~------~~~-~~~-------------~~~~v~~~Dva~~~~~~ 172 (208)
+.....+...|+++++|+||.+...... ..... +.. +.. .....+.+|+|++++.+
T Consensus 172 ~~la~el~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~vA~aiv~~ 251 (324)
T 3u9l_A 172 VQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHARQAEYEAGPNAGLGEEIKKAFAAIVPPDADVSLVADAIVRV 251 (324)
T ss_dssp HHHHHHHHTTTEEEEEEEECCC---------CBCCSCHHHHHHHHHTTTTTHHHHHHHHHHHTSCTTCCTHHHHHHHHHH
T ss_pred HHHHHHhhhhCcEEEEEECCccccCchhhcccCCchHHHHHHhhccccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 1111223346999999999998532110 00000 000 000 01124669999999999
Q ss_pred hhCCCCC-CcEEEEe
Q 028525 173 LESIPQT-GLIFEVV 186 (208)
Q Consensus 173 l~~~~~~-~~~~~i~ 186 (208)
++.+... ...+.+.
T Consensus 252 ~~~~~~~~~~~~~~g 266 (324)
T 3u9l_A 252 VGTASGKRPFRVHVD 266 (324)
T ss_dssp HTSCTTCCCSEEEEC
T ss_pred hcCCCCCCCeEEEeC
Confidence 9877532 3344444
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.1e-14 Score=104.79 Aligned_cols=164 Identities=11% Similarity=0.035 Sum_probs=106.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhcCC----CEEEEcCC----Cc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALRGV----RSIICPSE----GF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~~~----d~vi~~~~----~~ 76 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|.+++.++++.+ |++|++++ +.
T Consensus 8 Gas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~Ag~~~~~~ 87 (230)
T 3guy_A 8 GASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSAGSGYFGL 87 (230)
T ss_dssp STTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECCCCCCCSC
T ss_pred cCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeCCcCCCCc
Confidence 579999999999999999999999999876432 23457899999999999999999765 89998732 11
Q ss_pred h----------------------h----hhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHH---HHhcC
Q 028525 77 I----------------------S----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESM---LMASG 127 (208)
Q Consensus 77 ~----------------------~----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~---l~~~~ 127 (208)
+ . ..+.+.+. +||++||...+.+..+...|..+++-... .++.+ +...+
T Consensus 88 ~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~iv~isS~~~~~~~~~~~~Y~asKaa~~~-~~~~la~e~~~~g 165 (230)
T 3guy_A 88 LQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPV-NVVMIMSTAAQQPKAQESTYCAVKWAVKG-LIESVRLELKGKP 165 (230)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC-EEEEECCGGGTSCCTTCHHHHHHHHHHHH-HHHHHHHHTTTSS
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEeecccCCCCCCCchhHHHHHHHHH-HHHHHHHHHHhcC
Confidence 0 0 11223333 89999998877654445556553321110 11111 22358
Q ss_pred CCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 128 IPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 128 ~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
+++..|+||.+....... .........+.+.+|+|++++.++.++.
T Consensus 166 i~v~~v~PG~v~t~~~~~----~~~~~~~~~~~~~~dvA~~i~~l~~~~~ 211 (230)
T 3guy_A 166 MKIIAVYPGGMATEFWET----SGKSLDTSSFMSAEDAALMIHGALANIG 211 (230)
T ss_dssp CEEEEEEECCC--------------------CCCHHHHHHHHHHHCCEET
T ss_pred eEEEEEECCcccChHHHh----cCCCCCcccCCCHHHHHHHHHHHHhCcC
Confidence 999999999985432211 1111123456788999999999987655
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=110.95 Aligned_cols=177 Identities=12% Similarity=0.059 Sum_probs=115.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----Cc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE----GF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----~~ 76 (208)
+++|.||++++++|+++|++|++++|+.+.... ...+.+|++|.+++.++++ ++|++|++++ +.
T Consensus 35 Gas~gIG~aia~~la~~G~~V~~~~r~~~~~~~-----~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~lvnnAg~~~~~~ 109 (266)
T 3uxy_A 35 GAAGGIGGAVVTALRAAGARVAVADRAVAGIAA-----DLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGR 109 (266)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEECSSCCTTSCC-----SEECCCCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHh-----hhccCcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCC
Confidence 358999999999999999999999998765432 2445799999988877764 6899998732 11
Q ss_pred ----------------------hh----hhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCC
Q 028525 77 ----------------------IS----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGI 128 (208)
Q Consensus 77 ----------------------~~----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~ 128 (208)
.. ..+++.+..+||++||...+.+..+...|..+++-. +.+.....+...++
T Consensus 110 ~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI 189 (266)
T 3uxy_A 110 ITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDHAPQGI 189 (266)
T ss_dssp GGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred hhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 01 123556778999999988776544455565533211 11111122334689
Q ss_pred CEEEEeccccccCCCCc----cc-------eeeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCC
Q 028525 129 PYTIIRTGVLQNTPGGK----QG-------FQFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGE 189 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~~----~~-------~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~ 189 (208)
+++.|+||.+....... .. ..+..........+.+|+|++++.++.++.. .|+.+++.+|.
T Consensus 190 ~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 263 (266)
T 3uxy_A 190 RINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTVPLGRIAEPEDIADVVLFLASDAARYLCGSLVEVNGGK 263 (266)
T ss_dssp EEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred EEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECcCE
Confidence 99999999985421100 00 0011112234556889999999999876543 48889987654
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-14 Score=109.56 Aligned_cols=178 Identities=12% Similarity=0.092 Sum_probs=116.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----Cc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE----GF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----~~ 76 (208)
+++|.||++++++|+++|++|++++|+.+... ..+..+.+|++|++++.++++ ++|++|++++ +.
T Consensus 21 Gas~GIG~aia~~l~~~G~~V~~~~r~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~ 96 (269)
T 3vtz_A 21 GGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV----NVSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSP 96 (269)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCC--CT----TSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc----CceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCC
Confidence 35899999999999999999999999876643 257888999999999988876 6899998732 11
Q ss_pred h--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHh--cCC
Q 028525 77 I--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMA--SGI 128 (208)
Q Consensus 77 ~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~--~~~ 128 (208)
. ...+.+.+..+||++||...+.+......|..+++-... .++.+-.+ .++
T Consensus 97 ~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~-l~~~la~e~~~~i 175 (269)
T 3vtz_A 97 LHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLG-LTRSVAIDYAPKI 175 (269)
T ss_dssp GGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTTCHHHHHHHHHHHH-HHHHHHHHHTTTE
T ss_pred cccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCCChhHHHHHHHHHH-HHHHHHHHhcCCC
Confidence 0 112344667799999999887655445556553321110 11111111 279
Q ss_pred CEEEEeccccccCCCCc---------c---c-e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCc
Q 028525 129 PYTIIRTGVLQNTPGGK---------Q---G-F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEE 190 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~~---------~---~-~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~ 190 (208)
+++.|+||++....... . . . .+........+.+.+|+|++++.++.++. ..|+.+++.+|-.
T Consensus 176 ~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 254 (269)
T 3vtz_A 176 RCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHPMGRIGRPEEVAEVVAFLASDRSSFITGACLTVDGGLL 254 (269)
T ss_dssp EEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred EEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCCcc
Confidence 99999999985421100 0 0 0 01111122445678999999999887554 3588999986653
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=107.06 Aligned_cols=181 Identities=12% Similarity=0.069 Sum_probs=116.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE- 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~- 74 (208)
++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 40 as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 119 (276)
T 3r1i_A 40 ASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGI 119 (276)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 58999999999999999999999998765322 123468899999999999998886 7899998732
Q ss_pred ---Cch--------------------------hhhhhhcCC-CeEEEeceeeeccCC--CCcccccchhHHH--hHHHHH
Q 028525 75 ---GFI--------------------------SNAGSLKGV-QHVILLSQLSVYRGS--GGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 75 ---~~~--------------------------~~a~~~~gv-~~~v~~Ss~~~~~~~--~~~~~~~~~~~~~--~~~~~e 120 (208)
..+ ...+.+.+. .+||++||...+... .+...|..+++-. +.+...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~asKaa~~~l~~~la 199 (276)
T 3r1i_A 120 VSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMA 199 (276)
T ss_dssp CCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCCCCCcchHHHHHHHHHHHHHHHH
Confidence 110 011333443 689999998765422 2334455433211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCccce---eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQGF---QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~~~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
..+...+++++.|+||++.......... .+........+.+.+|+|++++.++.++. ..|+++++.+|-
T Consensus 200 ~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 273 (276)
T 3r1i_A 200 VELAPHQIRVNSVSPGYIRTELVEPLADYHALWEPKIPLGRMGRPEELTGLYLYLASAASSYMTGSDIVIDGGY 273 (276)
T ss_dssp HHHGGGTEEEEEEEECCBCSTTTGGGGGGHHHHGGGSTTSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHhhcCcEEEEEeeCCCcCCccccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCcEEEECcCc
Confidence 2233468999999999986433221100 01111122445678999999999887544 357888887654
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-14 Score=107.58 Aligned_cols=181 Identities=12% Similarity=0.034 Sum_probs=113.0
Q ss_pred cccCccHHHHHHHHHhCCCc-EEEEEcCchh--hhh---hc-CCceEEEEcCCCCH-HHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTR-IKALVKDKRN--AME---SF-GTYVESMAGDASNK-KFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~-V~~~~R~~~~--~~~---~~-~~~v~~v~~Dl~d~-~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||++++++|+++|++ |++++|+... ..+ .. +.++.++.+|++|+ +++.++++ ++|++|++
T Consensus 12 Gas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~id~lv~~ 91 (254)
T 1sby_A 12 AALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILING 91 (254)
T ss_dssp TTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhcCCCCEEEEC
Confidence 46999999999999999997 9999998632 211 11 23688999999998 88877765 78999987
Q ss_pred CCC----c--------------hhhh----hhhcC---CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 73 SEG----F--------------ISNA----GSLKG---VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 73 ~~~----~--------------~~~a----~~~~g---v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
++- . +.++ +.+.+ ..+||++||...+.+..+...|..++... +.+.....+..
T Consensus 92 Ag~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~ 171 (254)
T 1sby_A 92 AGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPI 171 (254)
T ss_dssp CCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCCCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 331 1 0111 22222 45899999998776544444555433211 11111112334
Q ss_pred cCCCEEEEeccccccCCCCccceeee-cC-----CcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQGFQFE-EG-----CAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE 189 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~~~~~~-~~-----~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~ 189 (208)
.+++++.|+||++............. .. .......+.+|+|++++.+++ ....++.|++.+|.
T Consensus 172 ~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~i~~~~~-~~~~G~~~~v~gG~ 240 (254)
T 1sby_A 172 TGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIE-ANKNGAIWKLDLGT 240 (254)
T ss_dssp HSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTTSCCEEHHHHHHHHHHHHH-HCCTTCEEEEETTE
T ss_pred CCeEEEEEecCCccCccccccchhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHH-cCCCCCEEEEeCCc
Confidence 79999999999985431110000000 00 001223478999999999886 34457889988664
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=8.1e-14 Score=106.37 Aligned_cols=182 Identities=12% Similarity=0.067 Sum_probs=117.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEE-cCchhhh------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALV-KDKRNAM------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~-R~~~~~~------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++ |+.++.. ...+.++.++.+|++|.+++.++++ ++|++|+++
T Consensus 20 Gas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~~A 99 (256)
T 3ezl_A 20 GGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNA 99 (256)
T ss_dssp TTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 4699999999999999999999988 4443321 1123468999999999999988886 579999873
Q ss_pred C----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 E----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+ .. ....+.+.+..+||++||...+.+..+...|..+++-. +.+....
T Consensus 100 g~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~ 179 (256)
T 3ezl_A 100 GITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQ 179 (256)
T ss_dssp CCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGSCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccCCCCCcccHHHHHHHHHHHHHHHH
Confidence 2 10 01123456778999999988776555555665533211 1111112
Q ss_pred HHHhcCCCEEEEeccccccCCCCc--cce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGK--QGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~--~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.+...+++++.|+||++....... ... .+........+.+.+|+|++++.++.++. ..|+.+++.+|-
T Consensus 180 e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~ 253 (256)
T 3ezl_A 180 EVATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATIPVRRLGSPDEIGSIVAWLASEESGFSTGADFSLNGGL 253 (256)
T ss_dssp HHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred HHHHhCCEEEEEEECcccCccccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCE
Confidence 233468999999999885321110 000 01111222445678999999999886543 358889987553
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=104.39 Aligned_cols=165 Identities=12% Similarity=0.060 Sum_probs=106.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG-- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~-- 75 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++ ..|++|++++.
T Consensus 10 Gas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~ 89 (235)
T 3l6e_A 10 GAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGE 89 (235)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEEEEECCCC-
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEEEECCCCCC
Confidence 568999999999999999999999999876432 223368999999999999888875 57999976321
Q ss_pred --c----------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 76 --F----------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 76 --~----------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
. . ...+.+.+ .+||++||...+.+......|..+++-. +.+.....+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~ 168 (235)
T 3l6e_A 90 FGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG-GVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELKD 168 (235)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EEEEEECCEECCSSCSSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEEeCHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHhhc
Confidence 0 0 01122333 2899999988776544445555533211 11111111224
Q ss_pred cCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
.+++++.|+||++........ . ......+.+.+|+|++++.++.++..
T Consensus 169 ~gi~v~~v~PG~v~T~~~~~~-~----~~~~~~~~~pedvA~~v~~l~~~~~~ 216 (235)
T 3l6e_A 169 SPLRLVNLYPSGIRSEFWDNT-D----HVDPSGFMTPEDAAAYMLDALEARSS 216 (235)
T ss_dssp SSEEEEEEEEEEECCCC----------------CBCHHHHHHHHHHHTCCCSS
T ss_pred cCCEEEEEeCCCccCcchhcc-C----CCCCcCCCCHHHHHHHHHHHHhCCCC
Confidence 689999999999854321111 0 01123567889999999999976553
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-13 Score=106.60 Aligned_cols=181 Identities=8% Similarity=0.010 Sum_probs=113.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh-h------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA-M------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-~------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|+.++. . ...+.++.++.+|++|.+++.++++ ++|++|+++
T Consensus 36 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv~~A 115 (283)
T 1g0o_A 36 GAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNS 115 (283)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3599999999999999999999999986541 1 1124468899999999998887764 689999873
Q ss_pred C----Cc----------------------hhhhhhh--cCCCeEEEeceeeeccCCCC-cccccchhHHH--hHHHHHHH
Q 028525 74 E----GF----------------------ISNAGSL--KGVQHVILLSQLSVYRGSGG-IQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 74 ~----~~----------------------~~~a~~~--~gv~~~v~~Ss~~~~~~~~~-~~~~~~~~~~~--~~~~~e~~ 122 (208)
+ +. +.+++.. .+..+||++||...+....+ ...|..+++-. +.+.....
T Consensus 116 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e 195 (283)
T 1g0o_A 116 GVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAID 195 (283)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 2 11 0112222 25579999999876543322 44455433211 11111122
Q ss_pred HHhcCCCEEEEeccccccCCCCc-------------cce--eeec--CCcCCCcccHHHHHHHHHHHhhCCC--CCCcEE
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGK-------------QGF--QFEE--GCAANGSLSKEDAAFICVEALESIP--QTGLIF 183 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~-------------~~~--~~~~--~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~ 183 (208)
+...+++++.|+||.+....... ... .+.. ......+.+.+|+|++++.++.++. ..|+.+
T Consensus 196 ~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i 275 (283)
T 1g0o_A 196 MADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVI 275 (283)
T ss_dssp HGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred hcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHHhCccccCcCCCEE
Confidence 33469999999999985421000 000 0100 1122345678999999999987543 347888
Q ss_pred EEeeC
Q 028525 184 EVVNG 188 (208)
Q Consensus 184 ~i~~~ 188 (208)
++.+|
T Consensus 276 ~vdgG 280 (283)
T 1g0o_A 276 GIDGG 280 (283)
T ss_dssp EESTT
T ss_pred EeCCC
Confidence 88755
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-13 Score=106.35 Aligned_cols=181 Identities=15% Similarity=0.117 Sum_probs=116.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhh-------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAM-------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~-------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
++|.||++++++|+++|++|++++|+.++.. +..+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 55 as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg 134 (291)
T 3ijr_A 55 GDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVA 134 (291)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 5899999999999999999999999875421 1124478899999999999888875 6899998722
Q ss_pred -----Cch----------------------hhhhhh--cCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHH
Q 028525 75 -----GFI----------------------SNAGSL--KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 75 -----~~~----------------------~~a~~~--~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
..+ .+++.. ....+||++||...+....+...|..+++-. +.+.....+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~ 214 (291)
T 3ijr_A 135 QQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSL 214 (291)
T ss_dssp CCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 110 111111 1234899999988776544455565533211 111111223
Q ss_pred HhcCCCEEEEeccccccCCCC----ccc-eeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 124 MASGIPYTIIRTGVLQNTPGG----KQG-FQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~----~~~-~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
...++++..|+||.+...... ... ..+........+.+.+|+|++++.++.++. ..|+.+++.+|-
T Consensus 215 ~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 287 (291)
T 3ijr_A 215 VQKGIRVNGVAPGPIWTPLIPSSFDEKKVSQFGSNVPMQRPGQPYELAPAYVYLASSDSSYVTGQMIHVNGGV 287 (291)
T ss_dssp GGGTCEEEEEEECSBCSTHHHHHSCHHHHHHTTTTSTTSSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESSSC
T ss_pred hhcCEEEEEEeeCCCcCCcccccCCHHHHHHHHccCCCCCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCCc
Confidence 346999999999998643210 000 001112223445678999999999887654 358888887553
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-13 Score=103.70 Aligned_cols=181 Identities=15% Similarity=0.074 Sum_probs=116.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEc-Cchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVK-DKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R-~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|+++.+ +.++..+ ..+.++.++.+|++|++++.++++ ..|++|+++
T Consensus 33 Gas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~nA 112 (267)
T 4iiu_A 33 GASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHGAWYGVVSNA 112 (267)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccEEEECC
Confidence 46899999999999999999988764 4433211 124578999999999999988876 689999873
Q ss_pred C----Cc----------------------hhhhh-----hhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 74 E----GF----------------------ISNAG-----SLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 74 ~----~~----------------------~~~a~-----~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
+ +. +.+++ ++.+..+||++||...+.+..+...|..+++-. +.+...
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la 192 (267)
T 4iiu_A 113 GIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGNRGQVNYSAAKAGIIGATKALA 192 (267)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCCCCCchhHHHHHHHHHHHHHHH
Confidence 2 11 01111 245667999999987765444445565533211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcccee---eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQGFQ---FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~~~~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..+...+++++.|+||.+........... .........+.+.+|+|++++.++.++. ..|+.+++.+|
T Consensus 193 ~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~p~~~~~~~edva~~~~~L~s~~~~~itG~~i~vdGG 265 (267)
T 4iiu_A 193 IELAKRKITVNCIAPGLIDTGMIEMEESALKEAMSMIPMKRMGQAEEVAGLASYLMSDIAGYVTRQVISINGG 265 (267)
T ss_dssp HHHGGGTEEEEEEEECSBCSTTCCCCHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHhhcCeEEEEEEEeeecCCcccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCccCCEEEeCCC
Confidence 22334689999999999865432211000 1111222446688999999999887543 35888888765
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.6e-13 Score=102.57 Aligned_cols=181 Identities=13% Similarity=0.010 Sum_probs=115.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcC-------------chhhh------hhcCCceEEEEcCCCCHHHHHHHhc-----
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKD-------------KRNAM------ESFGTYVESMAGDASNKKFLKTALR----- 64 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~-------------~~~~~------~~~~~~v~~v~~Dl~d~~~l~~~~~----- 64 (208)
++|.||++++++|+++|++|++++|+ .++.. ...+..+.++.+|++|++++.++++
T Consensus 19 as~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 98 (277)
T 3tsc_A 19 AARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLRKVVDDGVAA 98 (277)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 58899999999999999999999983 22221 1124568899999999999988875
Q ss_pred --CCCEEEEcCC----Cch--------------------------hhhhhhcC-CCeEEEeceeeeccCCCCcccccchh
Q 028525 65 --GVRSIICPSE----GFI--------------------------SNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGN 111 (208)
Q Consensus 65 --~~d~vi~~~~----~~~--------------------------~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~ 111 (208)
.+|++|++++ ..+ ...+.+.+ -.+||++||...+........|..++
T Consensus 99 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK 178 (277)
T 3tsc_A 99 LGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASK 178 (277)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCSSCHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCCCCCCchhhHHHH
Confidence 4899998732 110 01133333 46899999998776544445565533
Q ss_pred HHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCcc------------ceee--ecCCcCCCcccHHHHHHHHHHHhhC
Q 028525 112 ARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQ------------GFQF--EEGCAANGSLSKEDAAFICVEALES 175 (208)
Q Consensus 112 ~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~------------~~~~--~~~~~~~~~v~~~Dva~~~~~~l~~ 175 (208)
+-. +.+.....+...++++..|+||++........ .... ..........+.+|+|++++.++.+
T Consensus 179 aa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~~pedvA~~v~~L~s~ 258 (277)
T 3tsc_A 179 HAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHVLTPFLPDWVAEPEDIADTVCWLASD 258 (277)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHHHHHHHHHHHHTCGGGTTTTCCSSSCSCBCHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccchhhhhhhhcccccHHHHHHhhhccCCCCCCHHHHHHHHHHHhCc
Confidence 211 11111122334689999999999854322110 0000 0000112356789999999999876
Q ss_pred CC--CCCcEEEEeeCC
Q 028525 176 IP--QTGLIFEVVNGE 189 (208)
Q Consensus 176 ~~--~~~~~~~i~~~~ 189 (208)
+. ..|+.+++.+|.
T Consensus 259 ~~~~itG~~i~vdGG~ 274 (277)
T 3tsc_A 259 ESRKVTAAQIPVDQGS 274 (277)
T ss_dssp GGTTCCSCEEEESTTG
T ss_pred cccCCcCCEEeeCCCc
Confidence 54 358888887653
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.3e-13 Score=102.59 Aligned_cols=170 Identities=9% Similarity=-0.045 Sum_probs=109.0
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
++|.||++++++|+++|++|++++|+.++..+. ....+.++.+|++|++++.++++ ..|++|++++
T Consensus 41 as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG 120 (281)
T 4dry_A 41 GGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAG 120 (281)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 588999999999999999999999998753221 12235899999999999888875 5699998732
Q ss_pred -----Cch--------------------------hhhhhhcC--CCeEEEeceeeeccCCCCcccccchhHHH--hHHHH
Q 028525 75 -----GFI--------------------------SNAGSLKG--VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 75 -----~~~--------------------------~~a~~~~g--v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~ 119 (208)
..+ ...+.+.+ ..+||++||...+.+..+...|..+++-. +.+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaa~~~l~~~l 200 (281)
T 4dry_A 121 SNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHAITGLTKST 200 (281)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCCCCChhHHHHHHHHHHHHHHH
Confidence 110 01133333 46999999988776554555565533211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCccceeeec---CCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEE---GCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~---~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
...+...++++..|+||++.............. ........+.+|+|++++.++.++..
T Consensus 201 a~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~v~fL~s~~~~ 262 (281)
T 4dry_A 201 ALDGRMHDIACGQIDIGNAATDMTARMSTGVLQANGEVAAEPTIPIEHIAEAVVYMASLPLS 262 (281)
T ss_dssp HHHHGGGTEEEEEEEEECBCC-------CEEECTTSCEEECCCBCHHHHHHHHHHHHHSCTT
T ss_pred HHHhcccCeEEEEEEECcCcChhhhhhcchhhhhhhcccccCCCCHHHHHHHHHHHhCCCcc
Confidence 122334799999999999864322110000000 01123456889999999999988765
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.2e-13 Score=103.17 Aligned_cols=180 Identities=13% Similarity=0.046 Sum_probs=115.8
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcC----------------chhhhh------hcCCceEEEEcCCCCHHHHHHHhc--
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKD----------------KRNAME------SFGTYVESMAGDASNKKFLKTALR-- 64 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~----------------~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-- 64 (208)
++|.||++++++|+++|++|++++|+ .++..+ ..+.++.++.+|++|++++.++++
T Consensus 19 as~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 98 (286)
T 3uve_A 19 AARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYDALKAAVDSG 98 (286)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 58899999999999999999999987 222111 123468899999999999988875
Q ss_pred -----CCCEEEEcCC----Cc-h--------------------------hhhhhhcC-CCeEEEeceeeeccCCCCcccc
Q 028525 65 -----GVRSIICPSE----GF-I--------------------------SNAGSLKG-VQHVILLSQLSVYRGSGGIQAL 107 (208)
Q Consensus 65 -----~~d~vi~~~~----~~-~--------------------------~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~ 107 (208)
++|++|++++ .. + ...+.+.+ -.+||++||...+.+......|
T Consensus 99 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y 178 (286)
T 3uve_A 99 VEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHY 178 (286)
T ss_dssp HHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTCHHH
T ss_pred HHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchhhccCCCCccHH
Confidence 6899998722 10 0 01123333 4589999998877654444556
Q ss_pred cchhHHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCccc----ee----------------eecCCcCCCcccHHHH
Q 028525 108 MKGNARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQG----FQ----------------FEEGCAANGSLSKEDA 165 (208)
Q Consensus 108 ~~~~~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~----~~----------------~~~~~~~~~~v~~~Dv 165 (208)
..+++-. +.+..-..+...++++..|+||++......... +. +....+ ..+.+.+|+
T Consensus 179 ~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~r~~~p~dv 257 (286)
T 3uve_A 179 VAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQMFHTLP-IPWVEPIDI 257 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHHHTTCSSS-CSCBCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchhhhccccccccchhhHHHHHHhhhccC-CCcCCHHHH
Confidence 5533211 111111223347899999999998654321100 00 000111 345678999
Q ss_pred HHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 166 AFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 166 a~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
|++++.++.+.. ..|+.+++.+|.
T Consensus 258 A~~v~fL~s~~a~~itG~~i~vdGG~ 283 (286)
T 3uve_A 258 SNAVLFFASDEARYITGVTLPIDAGS 283 (286)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHcCccccCCcCCEEeECCcc
Confidence 999999987553 348889887553
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-13 Score=107.13 Aligned_cols=181 Identities=14% Similarity=0.073 Sum_probs=114.9
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcC------------chhhh------hhcCCceEEEEcCCCCHHHHHHHhc------
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKD------------KRNAM------ESFGTYVESMAGDASNKKFLKTALR------ 64 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~------------~~~~~------~~~~~~v~~v~~Dl~d~~~l~~~~~------ 64 (208)
++|.||++++++|+++|++|++++|+ .++.. ...+.++.++.+|++|++++.++++
T Consensus 54 as~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 133 (317)
T 3oec_A 54 AARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQAVVDEALAEF 133 (317)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 58899999999999999999999876 22211 1124578999999999999988875
Q ss_pred -CCCEEEEcCC----Cc----------------------h----hhhhhhcC-CCeEEEeceeeeccCCCCcccccchhH
Q 028525 65 -GVRSIICPSE----GF----------------------I----SNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNA 112 (208)
Q Consensus 65 -~~d~vi~~~~----~~----------------------~----~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~ 112 (208)
++|++|++++ +. + ...+.+.+ -.+||++||...+.+..+...|..+++
T Consensus 134 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKa 213 (317)
T 3oec_A 134 GHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKH 213 (317)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSSCCTTBHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcCCCCCCcchHHHHH
Confidence 6899998732 11 0 01122333 458999999887765444555655332
Q ss_pred HH--hHHHHHHHHHhcCCCEEEEeccccccCCCCc------------cce-----e-eec-CCcCCCcccHHHHHHHHHH
Q 028525 113 RK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGK------------QGF-----Q-FEE-GCAANGSLSKEDAAFICVE 171 (208)
Q Consensus 113 ~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~------------~~~-----~-~~~-~~~~~~~v~~~Dva~~~~~ 171 (208)
-. +.+.....+...+++++.|+||++....... ... . +.. ......+.+.+|+|++++.
T Consensus 214 a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~pedvA~av~f 293 (317)
T 3oec_A 214 GVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPHLENPTREDAAELFSQLTLLPIPWVEPEDVSNAVAW 293 (317)
T ss_dssp HHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCHHHHHHHCTTCSSCCHHHHHHHHTTTCSSSSSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCeEEEEEecCcccCccccchhhhhhhhhhccccchhHHHHHHhhhccCCCCCCCHHHHHHHHHH
Confidence 11 1111112233469999999999985421100 000 0 000 0111455688999999999
Q ss_pred HhhCCC--CCCcEEEEeeCC
Q 028525 172 ALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 172 ~l~~~~--~~~~~~~i~~~~ 189 (208)
++.+.. ..|+.+++.+|.
T Consensus 294 L~s~~a~~itG~~i~vdGG~ 313 (317)
T 3oec_A 294 LASDEARYIHGAAIPVDGGQ 313 (317)
T ss_dssp HTSGGGTTCCSCEEEESTTG
T ss_pred HcCCcccCCCCCEEEECcch
Confidence 886543 358889988654
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-13 Score=104.63 Aligned_cols=182 Identities=9% Similarity=0.013 Sum_probs=116.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------cC-CceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------FG-TYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~~-~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+ .++.++.+|++|++++.++++ ..|++|++
T Consensus 15 Gas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnn 94 (265)
T 3lf2_A 15 GGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLGCASILVNN 94 (265)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHCSCSEEEEC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3588999999999999999999999997653211 22 248899999999999888774 57999987
Q ss_pred CC----Cc----------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 73 SE----GF----------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 73 ~~----~~----------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
++ +. . ...+.+.+..+||++||...+.+......|..+++-. +.+...
T Consensus 95 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la 174 (265)
T 3lf2_A 95 AGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMA 174 (265)
T ss_dssp CCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCCTTBHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCCCCchhhHHHHHHHHHHHHHHH
Confidence 32 11 0 1113345567899999988776554455565533211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCc-----c--cee---e----ec--CCcCCCcccHHHHHHHHHHHhhCCC--CCCcE
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGK-----Q--GFQ---F----EE--GCAANGSLSKEDAAFICVEALESIP--QTGLI 182 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~-----~--~~~---~----~~--~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~ 182 (208)
..+...++++..|+||++....... . ... + .. ..+.....+.+|+|++++.++.+.. ..|+.
T Consensus 175 ~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~~~itG~~ 254 (265)
T 3lf2_A 175 FEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPLGRLGKPIEAARAILFLASPLSAYTTGSH 254 (265)
T ss_dssp HHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSEE
T ss_pred HHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccCCCcCCCcCHHHHHHHHHHHhCchhcCcCCCE
Confidence 2233468999999999885321000 0 000 0 00 0122345578999999999887543 34788
Q ss_pred EEEeeCC
Q 028525 183 FEVVNGE 189 (208)
Q Consensus 183 ~~i~~~~ 189 (208)
+++.+|-
T Consensus 255 i~vdGG~ 261 (265)
T 3lf2_A 255 IDVSGGL 261 (265)
T ss_dssp EEESSSC
T ss_pred EEECCCC
Confidence 8887553
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.4e-13 Score=100.20 Aligned_cols=179 Identities=11% Similarity=0.043 Sum_probs=117.9
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc---CCCEEEEcCC--Cc-------
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR---GVRSIICPSE--GF------- 76 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~---~~d~vi~~~~--~~------- 76 (208)
.++-||+++++.|++.|++|.+.+|+.++..+....++..+.+|++|++++.++++ +.|++|++++ ..
T Consensus 19 as~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAGi~~~~~~~~~~ 98 (242)
T 4b79_A 19 GSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAGISRDREEYDLA 98 (242)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCCCCGGGGGSHH
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCCCCCCcccCCHH
Confidence 47789999999999999999999999887665555678999999999999998886 5699997732 11
Q ss_pred -------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHHHHhcCCCEEEEec
Q 028525 77 -------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESMLMASGIPYTIIRT 135 (208)
Q Consensus 77 -------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~l~~~~~~~tivRp 135 (208)
....+++.+ .+||.+||............|..+++- .+.+..-..+...++++..|.|
T Consensus 99 ~w~~~~~vNl~g~~~~~~~~~p~m~~~~-G~IVnisS~~~~~~~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~P 177 (242)
T 4b79_A 99 TFERVLRLNLSAAMLASQLARPLLAQRG-GSILNIASMYSTFGSADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAP 177 (242)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHC-EEEEEECCGGGTSCCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEeeccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEe
Confidence 011233444 689999999876554445556554321 1112122334457999999999
Q ss_pred cccccCCCCccc----e--eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 136 GVLQNTPGGKQG----F--QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 136 ~~~~~~~~~~~~----~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
|++..+...... . .+....+...+-..+|||.+++.++.+... .|+.+.+.+|
T Consensus 178 G~i~T~m~~~~~~~~~~~~~~~~~~PlgR~g~peeiA~~v~fLaSd~a~~iTG~~l~VDGG 238 (242)
T 4b79_A 178 GWIDTPLGAGLKADVEATRRIMQRTPLARWGEAPEVASAAAFLCGPGASFVTGAVLAVDGG 238 (242)
T ss_dssp CSBCCC-----CCCHHHHHHHHHTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CCCCChhhhcccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCceEEECcc
Confidence 998543211100 0 000111122334569999999998865432 4788887654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-12 Score=98.01 Aligned_cols=164 Identities=10% Similarity=-0.020 Sum_probs=107.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh-------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME-------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~-------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++ ++|++|+++
T Consensus 9 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~A 88 (235)
T 3l77_A 9 GASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDVDVVVANA 88 (235)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSSCSEEEECC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 568999999999999999999999999765321 224578999999999999999886 679999873
Q ss_pred C----Cc----------------------hhh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHH-HHHHH
Q 028525 74 E----GF----------------------ISN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAE-QDESM 122 (208)
Q Consensus 74 ~----~~----------------------~~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~-~~e~~ 122 (208)
+ +. +.+ .++ .+..++|++||............|...+ ...+ .++.+
T Consensus 89 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~~~~ii~~sS~~~~~~~~~~~~Y~~sK--aa~~~~~~~l 165 (235)
T 3l77_A 89 GLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLK-RTGGLALVTTSDVSARLIPYGGGYVSTK--WAARALVRTF 165 (235)
T ss_dssp CCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHH-HHTCEEEEECCGGGSSCCTTCHHHHHHH--HHHHHHHHHH
T ss_pred ccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCcEEEEecchhcccCCCcchHHHHH--HHHHHHHHHH
Confidence 2 11 001 122 2234677777665544333333454432 2111 12111
Q ss_pred -HHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 123 -LMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 123 -l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
+...+++++.|+||++........ . .......+.+.+|+|++++.++.++..
T Consensus 166 ~~~~~~i~v~~v~PG~v~T~~~~~~---~-~~~~~~~~~~p~dva~~v~~l~~~~~~ 218 (235)
T 3l77_A 166 QIENPDVRFFELRPGAVDTYFGGSK---P-GKPKEKGYLKPDEIAEAVRCLLKLPKD 218 (235)
T ss_dssp HHHCTTSEEEEEEECSBSSSTTTCC---S-CCCGGGTCBCHHHHHHHHHHHHTSCTT
T ss_pred hhcCCCeEEEEEeCCcccccccccc---C-CcccccCCCCHHHHHHHHHHHHcCCCC
Confidence 223689999999999854332211 0 111123567889999999999987764
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.8e-13 Score=102.15 Aligned_cols=167 Identities=11% Similarity=0.076 Sum_probs=109.1
Q ss_pred cccCccHHHHHHHHHhCC---CcEEEEEcCchhhh---hh--cCCceEEEEcCCCCHHHHHHHhc---------CCCEEE
Q 028525 8 KRKKMNFRMVILSLIVKR---TRIKALVKDKRNAM---ES--FGTYVESMAGDASNKKFLKTALR---------GVRSII 70 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g---~~V~~~~R~~~~~~---~~--~~~~v~~v~~Dl~d~~~l~~~~~---------~~d~vi 70 (208)
+++|.||++++++|+++| ++|++++|+.++.. +. ...++.++.+|++|.+++.++++ ++|+||
T Consensus 28 GasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~~~id~li 107 (267)
T 1sny_A 28 GCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLF 107 (267)
T ss_dssp CCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGGCCSEEE
T ss_pred CCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHhcCCCCccEEE
Confidence 469999999999999999 99999999876422 11 13478999999999999988886 799999
Q ss_pred EcCC--C---ch----------------------hh----hhhhc------C-----CCeEEEeceeeeccCCC---Ccc
Q 028525 71 CPSE--G---FI----------------------SN----AGSLK------G-----VQHVILLSQLSVYRGSG---GIQ 105 (208)
Q Consensus 71 ~~~~--~---~~----------------------~~----a~~~~------g-----v~~~v~~Ss~~~~~~~~---~~~ 105 (208)
++++ . .+ .+ .+.+. + ..+||++||...+.... +..
T Consensus 108 ~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~ 187 (267)
T 1sny_A 108 NNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMY 187 (267)
T ss_dssp ECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCSTTCCSCCCH
T ss_pred ECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecccccccCCCCCCch
Confidence 8722 1 10 01 11222 2 46899999987765332 333
Q ss_pred cccchhHHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCc
Q 028525 106 ALMKGNARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP--QTGL 181 (208)
Q Consensus 106 ~~~~~~~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~ 181 (208)
.|...++.. +.+.....+...++++++||||++...... ....++.+|+|+.++.++..+. ..+.
T Consensus 188 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-----------~~~~~~~~~~a~~~~~~~~~~~~~~~G~ 256 (267)
T 1sny_A 188 AYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGG-----------SSAPLDVPTSTGQIVQTISKLGEKQNGG 256 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTC-----------TTCSBCHHHHHHHHHHHHHHCCGGGTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCC-----------CCCCCCHHHHHHHHHHHHHhcCcCCCCc
Confidence 444422211 111111122336899999999998543221 1245788999999999987653 2355
Q ss_pred EEEE
Q 028525 182 IFEV 185 (208)
Q Consensus 182 ~~~i 185 (208)
.+.+
T Consensus 257 ~~~~ 260 (267)
T 1sny_A 257 FVNY 260 (267)
T ss_dssp EECT
T ss_pred EEcc
Confidence 4443
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=107.01 Aligned_cols=165 Identities=12% Similarity=0.091 Sum_probs=107.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cC-CceEEEEcCCCCHHHHHHHhc-------CCCEEEEc-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FG-TYVESMAGDASNKKFLKTALR-------GVRSIICP- 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~-~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~- 72 (208)
+++|.||++++++|+++|++|++++|+.++.... .+ .++.++.+|++|.+++.++++ ++|++|++
T Consensus 35 GasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~li~na 114 (286)
T 1xu9_A 35 GASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNH 114 (286)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTSCSEEEECC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3589999999999999999999999997763321 12 368899999999999888775 68999976
Q ss_pred CCCc-------------------------hhh----hhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 73 SEGF-------------------------ISN----AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 73 ~~~~-------------------------~~~----a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
.+.. ... .+++ +.++||++||...+.+..+...|..++... +.+....
T Consensus 115 ag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~l~~ 193 (286)
T 1xu9_A 115 ITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQ-SNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRK 193 (286)
T ss_dssp CCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEEEEEEGGGTSCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH-CCCEEEEECCcccccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 2210 001 1122 236999999988765444444555433211 1111111
Q ss_pred HH--HhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 122 ML--MASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 122 ~l--~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
.+ ...++++++++||++....... .. .+......++.+|+|+.++.+++.+.
T Consensus 194 e~~~~~~~i~v~~v~Pg~v~t~~~~~-~~---~~~~~~~~~~~~~vA~~i~~~~~~~~ 247 (286)
T 1xu9_A 194 EYSVSRVNVSITLCVLGLIDTETAMK-AV---SGIVHMQAAPKEECALEIIKGGALRQ 247 (286)
T ss_dssp HHHHHTCCCEEEEEEECCBCCHHHHH-HS---CGGGGGGCBCHHHHHHHHHHHHHTTC
T ss_pred HHhhcCCCeEEEEeecCccCChhHHH-hc---cccccCCCCCHHHHHHHHHHHHhcCC
Confidence 22 3468999999999874321110 00 11112346789999999999997654
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-13 Score=104.68 Aligned_cols=189 Identities=14% Similarity=0.031 Sum_probs=115.2
Q ss_pred Cchhhhc-----ccc--CccHHHHHHHHHhCCCcEEEEEcCch---hhhhhc--CCceEEEEcCCCCHHHHHHHhc----
Q 028525 1 MGPMKKM-----KRK--KMNFRMVILSLIVKRTRIKALVKDKR---NAMESF--GTYVESMAGDASNKKFLKTALR---- 64 (208)
Q Consensus 1 ~~~~~~~-----~~~--G~iG~~l~~~Ll~~g~~V~~~~R~~~---~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~---- 64 (208)
|+.|+.+ +++ |.||++++++|+++|++|++++|+.+ ...+.. ..++.++.+|++|++++.++++
T Consensus 1 M~~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (275)
T 2pd4_A 1 MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK 80 (275)
T ss_dssp -CTTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHH
Confidence 5656433 346 89999999999999999999999875 221111 1247889999999999988875
Q ss_pred ---CCCEEEEcCC--------Cch----------------------hhhhhhc--CCCeEEEeceeeeccCCCCcccccc
Q 028525 65 ---GVRSIICPSE--------GFI----------------------SNAGSLK--GVQHVILLSQLSVYRGSGGIQALMK 109 (208)
Q Consensus 65 ---~~d~vi~~~~--------~~~----------------------~~a~~~~--gv~~~v~~Ss~~~~~~~~~~~~~~~ 109 (208)
++|++|++++ +.+ .+++... .-.+||++||.....+..+...|..
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a 160 (275)
T 2pd4_A 81 DLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGL 160 (275)
T ss_dssp HTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTCHHHHH
T ss_pred HcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCCCCCchhhHH
Confidence 5699998722 111 0111111 1258999999876654333444554
Q ss_pred hhHHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCccc----e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CC
Q 028525 110 GNARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQG----F--QFEEGCAANGSLSKEDAAFICVEALESIP--QT 179 (208)
Q Consensus 110 ~~~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~----~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~ 179 (208)
+++-. +.+.....+...+++++.|+||.+......... . .+..........+.+|+|++++.++..+. ..
T Consensus 161 sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dva~~~~~l~s~~~~~~t 240 (275)
T 2pd4_A 161 AKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGVS 240 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCC
T ss_pred HHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhccccHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCccccCCC
Confidence 33211 111111223446999999999998543211100 0 00000112335678999999999986543 35
Q ss_pred CcEEEEeeCC
Q 028525 180 GLIFEVVNGE 189 (208)
Q Consensus 180 ~~~~~i~~~~ 189 (208)
|+.+++.+|.
T Consensus 241 G~~~~vdgg~ 250 (275)
T 2pd4_A 241 GEVHFVDAGY 250 (275)
T ss_dssp SCEEEESTTG
T ss_pred CCEEEECCCc
Confidence 7888887553
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-12 Score=102.62 Aligned_cols=180 Identities=13% Similarity=0.082 Sum_probs=115.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcC------------chhhh------hhcCCceEEEEcCCCCHHHHHHHhc------
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKD------------KRNAM------ESFGTYVESMAGDASNKKFLKTALR------ 64 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~------------~~~~~------~~~~~~v~~v~~Dl~d~~~l~~~~~------ 64 (208)
++|.||++++++|+++|++|++++|+ .++.. ...+.++.++.+|++|++++.++++
T Consensus 36 as~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 115 (299)
T 3t7c_A 36 AARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQAAVDDGVTQL 115 (299)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 58899999999999999999999987 22211 1124578999999999999988875
Q ss_pred -CCCEEEEcCC----Cc-h----------------------hh----hhhhc-CCCeEEEeceeeeccCCCCcccccchh
Q 028525 65 -GVRSIICPSE----GF-I----------------------SN----AGSLK-GVQHVILLSQLSVYRGSGGIQALMKGN 111 (208)
Q Consensus 65 -~~d~vi~~~~----~~-~----------------------~~----a~~~~-gv~~~v~~Ss~~~~~~~~~~~~~~~~~ 111 (208)
++|++|++++ +. + .+ .+.+. +..+||++||...+.+......|..++
T Consensus 116 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asK 195 (299)
T 3t7c_A 116 GRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASK 195 (299)
T ss_dssp SCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCCCcchHHHHH
Confidence 6899997722 11 0 01 12222 356999999988776544455565533
Q ss_pred HHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCccc----ee----------------eecCCcCCCcccHHHHHHHH
Q 028525 112 ARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQG----FQ----------------FEEGCAANGSLSKEDAAFIC 169 (208)
Q Consensus 112 ~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~----~~----------------~~~~~~~~~~v~~~Dva~~~ 169 (208)
+-. +.+.....+...++++..|+||++......... +. ..... ...+...+|+|+++
T Consensus 196 aa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~r~~~pedvA~~v 274 (299)
T 3t7c_A 196 HGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVL-PIPYVEPADISNAI 274 (299)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHHHHHSSS-SCSCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhccchhhHHHHHhhhhccc-CcCCCCHHHHHHHH
Confidence 211 111111223346899999999998654321100 00 00001 13456789999999
Q ss_pred HHHhhCCC--CCCcEEEEeeCC
Q 028525 170 VEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 170 ~~~l~~~~--~~~~~~~i~~~~ 189 (208)
+.++.++. ..|+.+++.+|.
T Consensus 275 ~fL~s~~a~~itG~~i~vdGG~ 296 (299)
T 3t7c_A 275 LFLVSDDARYITGVSLPVDGGA 296 (299)
T ss_dssp HHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHhCcccccCcCCEEeeCCCc
Confidence 99987554 348888887553
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-13 Score=110.46 Aligned_cols=169 Identities=12% Similarity=0.117 Sum_probs=111.5
Q ss_pred cccCccHHHHHHHHHhCCCc-EEEEEcCchh------h-h--hhcCCceEEEEcCCCCHHHHHHHhcCC------CEEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTR-IKALVKDKRN------A-M--ESFGTYVESMAGDASNKKFLKTALRGV------RSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~-V~~~~R~~~~------~-~--~~~~~~v~~v~~Dl~d~~~l~~~~~~~------d~vi~ 71 (208)
+++|.||++++++|+++|++ |++++|+... . . +..+.++.++.+|++|.+++.++++.+ |+|||
T Consensus 233 GgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~~g~ld~VIh 312 (486)
T 2fr1_A 233 GGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDVPLSAVFH 312 (486)
T ss_dssp TTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTSCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 46999999999999999986 9999998642 1 1 112456899999999999999999865 99998
Q ss_pred cCC----Cc----------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHh
Q 028525 72 PSE----GF----------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMA 125 (208)
Q Consensus 72 ~~~----~~----------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~ 125 (208)
+++ +. +.+++...+.++||++||........+...|... |...+...+.++.
T Consensus 313 ~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g~~g~~~Yaaa--ka~l~~la~~~~~ 390 (486)
T 2fr1_A 313 AAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAPGLGGYAPG--NAYLDGLAQQRRS 390 (486)
T ss_dssp CCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCTTCTTTHHH--HHHHHHHHHHHHH
T ss_pred CCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCCCCCCHHHHHH--HHHHHHHHHHHHh
Confidence 832 11 1223445678899999998655433344455543 3222222234566
Q ss_pred cCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
.++++++|+||.+.+.........-.....+...++.+|+++++..++..+..
T Consensus 391 ~gi~v~~i~pG~~~~~gm~~~~~~~~~~~~g~~~i~~e~~a~~l~~~l~~~~~ 443 (486)
T 2fr1_A 391 DGLPATAVAWGTWAGSGMAEGPVADRFRRHGVIEMPPETACRALQNALDRAEV 443 (486)
T ss_dssp TTCCCEEEEECCBC------------CTTTTEECBCHHHHHHHHHHHHHTTCS
T ss_pred cCCeEEEEECCeeCCCcccchhHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCC
Confidence 89999999999875431111101000111224568999999999999986653
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.9e-14 Score=106.66 Aligned_cols=181 Identities=9% Similarity=0.070 Sum_probs=118.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------c-CCceEEEEcCCCCHHHHHHHhc---CCCEEEEcCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------F-GTYVESMAGDASNKKFLKTALR---GVRSIICPSE-- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~-~~~v~~v~~Dl~d~~~l~~~~~---~~d~vi~~~~-- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. . ...+..+.+|++|++++.++++ ++|++|++++
T Consensus 17 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~lv~nAg~~ 96 (267)
T 3t4x_A 17 GSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVDILINNLGIF 96 (267)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCSEEEECCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCCEEEECCCCC
Confidence 3588999999999999999999999997653221 1 2357889999999999988886 6899998732
Q ss_pred --Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHH-HHH---H
Q 028525 75 --GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-DES---M 122 (208)
Q Consensus 75 --~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~e~---~ 122 (208)
.. ....+.+.+..+||++||...+.+..+...|..+++ ..+. ++. .
T Consensus 97 ~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKa--a~~~l~~~la~e 174 (267)
T 3t4x_A 97 EPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATKT--MQLSLSRSLAEL 174 (267)
T ss_dssp CCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCCTTCHHHHHHHH--HHHHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCCCcchHHHHHHH--HHHHHHHHHHHH
Confidence 11 011234456679999999987765545555655332 1111 111 1
Q ss_pred HHhcCCCEEEEeccccccCCC--------Ccccee--------e---ecCCcCCCcccHHHHHHHHHHHhhCCC--CCCc
Q 028525 123 LMASGIPYTIIRTGVLQNTPG--------GKQGFQ--------F---EEGCAANGSLSKEDAAFICVEALESIP--QTGL 181 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~--------~~~~~~--------~---~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~ 181 (208)
+...++++..|+||.+..... ...... + ........+.+.+|+|++++.++.+.. ..|+
T Consensus 175 ~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~fL~s~~~~~itG~ 254 (267)
T 3t4x_A 175 TTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENRPTSIIQRLIRPEEIAHLVTFLSSPLSSAINGS 254 (267)
T ss_dssp TTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHHCTTCSSCSCBCTHHHHHHHHHHHSGGGTTCCSC
T ss_pred hCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhccCCcccccCccCHHHHHHHHHHHcCccccCccCC
Confidence 223579999999998753210 000000 0 000112456678999999999887543 3488
Q ss_pred EEEEeeCCc
Q 028525 182 IFEVVNGEE 190 (208)
Q Consensus 182 ~~~i~~~~~ 190 (208)
.+++.+|-.
T Consensus 255 ~i~vdGG~~ 263 (267)
T 3t4x_A 255 ALRIDGGLV 263 (267)
T ss_dssp EEEESTTCS
T ss_pred eEEECCCcc
Confidence 999886653
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-13 Score=106.02 Aligned_cols=181 Identities=10% Similarity=-0.047 Sum_probs=117.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEE-cCchhhhh-------hcCCceEEEEcCCCCHH-----------------HHHHH
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALV-KDKRNAME-------SFGTYVESMAGDASNKK-----------------FLKTA 62 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~-R~~~~~~~-------~~~~~v~~v~~Dl~d~~-----------------~l~~~ 62 (208)
+++|.||++++++|+++|++|++++ |+.++..+ ..+.++.++.+|++|++ ++.++
T Consensus 53 Gas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~~v~~~ 132 (328)
T 2qhx_A 53 GAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLFTRCAEL 132 (328)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CCBCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccccccccccccHHHHHHH
Confidence 3589999999999999999999999 88765321 12446899999999998 88877
Q ss_pred hc-------CCCEEEEcCC----Cc----h--------------h----------------------hhhhhcC------
Q 028525 63 LR-------GVRSIICPSE----GF----I--------------S----------------------NAGSLKG------ 85 (208)
Q Consensus 63 ~~-------~~d~vi~~~~----~~----~--------------~----------------------~a~~~~g------ 85 (208)
++ ++|++|++++ +. . . ..+.+.+
T Consensus 133 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~ 212 (328)
T 2qhx_A 133 VAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGT 212 (328)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSCGGGSCS
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCC
Confidence 75 7899998732 10 0 0 1122344
Q ss_pred CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCcccee---eecCCcCC-Cc
Q 028525 86 VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQ---FEEGCAAN-GS 159 (208)
Q Consensus 86 v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~---~~~~~~~~-~~ 159 (208)
..+||++||...+.+..+...|...++-. +.+.....+...+++++.|+||++.... ...... +....... .+
T Consensus 213 ~g~IV~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~-~~~~~~~~~~~~~~p~~~r~ 291 (328)
T 2qhx_A 213 NYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD-DMPPAVWEGHRSKVPLYQRD 291 (328)
T ss_dssp CEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCC-CSCHHHHHHHHTTCTTTTSC
T ss_pred CcEEEEECchhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCCc-cccHHHHHHHHhhCCCCCCC
Confidence 67999999988765444444555533211 1111112233468999999999986543 211000 10111122 46
Q ss_pred ccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 160 LSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 160 v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.+.+|+|++++.++..+. ..|+.+++.+|-
T Consensus 292 ~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~ 323 (328)
T 2qhx_A 292 SSAAEVSDVVIFLCSSKAKYITGTCVKVDGGY 323 (328)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCHHHHHHHHHHHhCccccCccCcEEEECCCc
Confidence 788999999999986543 347888887553
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=106.53 Aligned_cols=180 Identities=9% Similarity=0.043 Sum_probs=116.7
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc------CCCEEEEcCCC-
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR------GVRSIICPSEG- 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~------~~d~vi~~~~~- 75 (208)
++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|.+++.++++ ++|++|++++.
T Consensus 41 as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~iD~lvnnAg~~ 120 (275)
T 4imr_A 41 SSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPVDILVINASAQ 120 (275)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 58899999999999999999999998765321 124578999999999998888875 68999987321
Q ss_pred ---ch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHH
Q 028525 76 ---FI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLM 124 (208)
Q Consensus 76 ---~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~ 124 (208)
.+ ...+.+.+..+||++||...+.+..+...|..+++-. +.+.....+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~ 200 (275)
T 4imr_A 121 INATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLRPKSVVTAYAATKAAQHNLIQSQARDFA 200 (275)
T ss_dssp CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Confidence 10 1123445677999999988776444444465533211 1111112233
Q ss_pred hcCCCEEEEeccccccCCCCcc----cee---eecCC-cCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 125 ASGIPYTIIRTGVLQNTPGGKQ----GFQ---FEEGC-AANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~~----~~~---~~~~~-~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..++++..|+||++........ ... +.... ........+|+|++++.++.++. ..|+.+++.+|
T Consensus 201 ~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG 274 (275)
T 4imr_A 201 GDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTLNWMGRAGRPEEMVGAALFLASEACSFMTGETIFLTGG 274 (275)
T ss_dssp GGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHHSTTCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred ccCcEEEEEEeccccCcccccccccChHHHHHHHhhcCccCCCcCHHHHHHHHHHHcCcccCCCCCCEEEeCCC
Confidence 4689999999999853211000 000 00000 22334567999999999887553 35788888754
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-13 Score=104.24 Aligned_cols=181 Identities=12% Similarity=0.079 Sum_probs=112.1
Q ss_pred cc--CccHHHHHHHHHhCCCcEEEEEcCch---hhhhhc--CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 9 RK--KMNFRMVILSLIVKRTRIKALVKDKR---NAMESF--GTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 9 ~~--G~iG~~l~~~Ll~~g~~V~~~~R~~~---~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
++ |.||++++++|+++|++|++++|+.+ ...+.. ...+.++.+|++|++++.++++ ++|++|++++
T Consensus 16 as~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag 95 (261)
T 2wyu_A 16 VTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIA 95 (261)
T ss_dssp CCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred CCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 46 89999999999999999999999874 221111 1247889999999999988876 6799998732
Q ss_pred --------Cch----------------------hhhhhhc--CCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 75 --------GFI----------------------SNAGSLK--GVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 75 --------~~~----------------------~~a~~~~--gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
+.+ .+++... .-.+||++||...+.+..+...|..+++-. +.+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la 175 (261)
T 2wyu_A 96 FAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLA 175 (261)
T ss_dssp CCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCCCCchHHHHHHHHHHHHHHHHH
Confidence 110 0111111 124899999987765433344454433211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc-ce-----eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ-GF-----QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~-~~-----~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
..+...+++++.|+||.+........ .. .+........+.+.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 176 ~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~ 252 (261)
T 2wyu_A 176 YELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGY 252 (261)
T ss_dssp HHHGGGTCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHhhhCcEEEEEeeCCCcCchhhhccccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCCc
Confidence 22334699999999999864321110 00 00001112345678999999999986543 247889988664
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=105.93 Aligned_cols=181 Identities=10% Similarity=-0.024 Sum_probs=114.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc--CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF--GTYVESMAGDASNKKFLKTALR-------GVRSIICPSE---- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~---- 74 (208)
+++|.||++++++|+++|++|++++|++++..+.. -.++.++.+|++|++++.++++ ++|++|++++
T Consensus 16 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~ 95 (270)
T 1yde_A 16 GGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPP 95 (270)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 35999999999999999999999999977643211 1248899999999999988875 6899998722
Q ss_pred -Cch----------------------hhh----hhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 75 -GFI----------------------SNA----GSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 75 -~~~----------------------~~a----~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
... .++ +.+. ..+||++||............|...++-. +.+.....+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~ 174 (270)
T 1yde_A 96 PQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS-QGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESP 174 (270)
T ss_dssp CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC-CCEEEEEcCccccCCCCCCcccHHHHHHHHHHHHHHHHHhhh
Confidence 110 011 1222 46999999986554333344555433211 11111122334
Q ss_pred cCCCEEEEeccccccCCCC------ccce-ee---ecCCcCCCcccHHHHHHHHHHHhhCCC-CCCcEEEEeeCC
Q 028525 126 SGIPYTIIRTGVLQNTPGG------KQGF-QF---EEGCAANGSLSKEDAAFICVEALESIP-QTGLIFEVVNGE 189 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~------~~~~-~~---~~~~~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~i~~~~ 189 (208)
.+++++.||||++...... .... .+ ........+.+.+|+|++++.++.+.. ..|+.+.+.+|.
T Consensus 175 ~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~~~~itG~~i~vdGG~ 249 (270)
T 1yde_A 175 YGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRMGQPAEVGAAAVFLASEANFCTGIELLVTGGA 249 (270)
T ss_dssp GTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHHHCTTCCSCEEEESTTT
T ss_pred hCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhcCCCCCCcCHHHHHHHHHHHcccCCCcCCCEEEECCCe
Confidence 7999999999998643110 0000 00 001112334678999999998887533 357889988665
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=105.07 Aligned_cols=166 Identities=12% Similarity=0.026 Sum_probs=106.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------c--C-CceEEEEcCCCCHHHHHHHhc-------CCCEEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------F--G-TYVESMAGDASNKKFLKTALR-------GVRSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~--~-~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~ 71 (208)
+++|.||++++++|+++|++|++++|+.++..+. . . .++.++.+|++|.+++.++++ ++|++|+
T Consensus 14 Gas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn 93 (250)
T 3nyw_A 14 GASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVN 93 (250)
T ss_dssp STTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4689999999999999999999999998753221 1 2 468899999999999888875 5799998
Q ss_pred cCC----Cc-------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 72 PSE----GF-------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 72 ~~~----~~-------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
+++ +. ....+++.+..+||++||.....+..+...|..+++-. +.+...
T Consensus 94 nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la 173 (250)
T 3nyw_A 94 AAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLY 173 (250)
T ss_dssp CCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC-------CCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 732 11 01123445677999999987665333344555433211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
..+...+++++.|+||++....... .........+.+.+|+|++++.++.++.
T Consensus 174 ~e~~~~gi~vn~v~PG~v~T~~~~~----~~~~~~~~~~~~p~dva~~v~~l~s~~~ 226 (250)
T 3nyw_A 174 RELAPLGIRVTTLCPGWVNTDMAKK----AGTPFKDEEMIQPDDLLNTIRCLLNLSE 226 (250)
T ss_dssp HHHGGGTEEEEEEEESSBCSHHHHH----TTCCSCGGGSBCHHHHHHHHHHHHTSCT
T ss_pred HHhhhcCcEEEEEecCcccCchhhh----cCCCcccccCCCHHHHHHHHHHHHcCCC
Confidence 2233468999999999985321110 0011122446789999999999998765
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=106.86 Aligned_cols=182 Identities=9% Similarity=0.009 Sum_probs=117.9
Q ss_pred ccCccHHHHHHHHHhCCC---cEEEEEcCchhhhhh--------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEE
Q 028525 9 RKKMNFRMVILSLIVKRT---RIKALVKDKRNAMES--------FGTYVESMAGDASNKKFLKTALR-------GVRSII 70 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~---~V~~~~R~~~~~~~~--------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi 70 (208)
++|.||++++++|+++|+ +|++..|+.++..+. .+.++.++.+|++|++++.++++ ++|++|
T Consensus 41 as~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lV 120 (287)
T 3rku_A 41 ASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILV 120 (287)
T ss_dssp TTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCGGGCSCCEEE
T ss_pred CCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 589999999999999987 999999997763221 13468899999999999999886 469999
Q ss_pred EcCC-----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHH
Q 028525 71 CPSE-----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAE 117 (208)
Q Consensus 71 ~~~~-----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~ 117 (208)
++++ +.+ ...+++.+..+||++||...+.+..+...|..+++-. +.+
T Consensus 121 nnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaa~~~l~~ 200 (287)
T 3rku_A 121 NNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTD 200 (287)
T ss_dssp ECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHH
T ss_pred ECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCCCCCCchHHHHHHHHHHHHH
Confidence 8722 110 1123456677999999988776544455565533211 111
Q ss_pred HHHHHHHhcCCCEEEEeccccccCCCC----ccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCCc
Q 028525 118 QDESMLMASGIPYTIIRTGVLQNTPGG----KQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGEE 190 (208)
Q Consensus 118 ~~e~~l~~~~~~~tivRp~~~~~~~~~----~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~~ 190 (208)
.....+...+++++.|+||++...... ..............++..+|+|++++.++.++.. .++.+.+.++..
T Consensus 201 ~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~pedvA~~v~~l~s~~~~~i~g~~i~v~~g~~ 279 (287)
T 3rku_A 201 SLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQAKNVYKDTTPLMADDVADLIVYATSRKQNTVIADTLIFPTNQA 279 (287)
T ss_dssp HHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCHHHHHHHHTTSCCEEHHHHHHHHHHHHTSCTTEEEEEEEEEETTEE
T ss_pred HHHHHhhhcCCEEEEEeCCcCcCccccccccCcHHHHHHhhcccCCCCHHHHHHHHHHHhCCCCCeEecceEEeeCCCC
Confidence 111122236899999999998543210 0000000001112345789999999999987653 367777776554
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.8e-13 Score=101.87 Aligned_cols=170 Identities=9% Similarity=0.011 Sum_probs=106.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+..+.++.+|++|++++.++++ ++|++|++++
T Consensus 11 Gas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG 90 (264)
T 3tfo_A 11 GASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAG 90 (264)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4688999999999999999999999997663221 24468889999999999888875 6899998732
Q ss_pred ----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHH
Q 028525 75 ----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLM 124 (208)
Q Consensus 75 ----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~ 124 (208)
+. ....+++.+..+||++||...+........|..+++-... .++.+-.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaal~~-l~~~la~ 169 (264)
T 3tfo_A 91 VMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRA-ISDGLRQ 169 (264)
T ss_dssp CCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHH-HHHHHHH
T ss_pred CCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccCCCChhHHHHHHHHHH-HHHHHHH
Confidence 11 0112344567799999999877654444556553321110 1111111
Q ss_pred h-cCCCEEEEeccccccCCCCccc--eeee-cCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 125 A-SGIPYTIIRTGVLQNTPGGKQG--FQFE-EGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 125 ~-~~~~~tivRp~~~~~~~~~~~~--~~~~-~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
+ .+++++.|+||++......... .... .......+.+.+|+|++++.++.++..
T Consensus 170 e~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~v~~l~s~~~~ 227 (264)
T 3tfo_A 170 ESTNIRVTCVNPGVVESELAGTITHEETMAAMDTYRAIALQPADIARAVRQVIEAPQS 227 (264)
T ss_dssp HCSSEEEEEEEECCC-----------------------CCCHHHHHHHHHHHHHSCTT
T ss_pred hCCCCEEEEEecCCCcCcccccccchhHHHHHHhhhccCCCHHHHHHHHHHHhcCCcc
Confidence 2 3899999999988543221100 0000 000111246789999999999987764
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-12 Score=99.31 Aligned_cols=180 Identities=14% Similarity=0.095 Sum_probs=112.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchh-hh------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRN-AM------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
++|.||++++++|+++|++|+++.|+... .. ...+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 39 as~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg 118 (271)
T 3v2g_A 39 GSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAG 118 (271)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence 58899999999999999999999776532 11 1124578899999999999988886 7899998732
Q ss_pred ----Cch----------------------hhhh-hh-cCCCeEEEeceeeeccC-CCCcccccchhHHH--hHHHHHHHH
Q 028525 75 ----GFI----------------------SNAG-SL-KGVQHVILLSQLSVYRG-SGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 75 ----~~~----------------------~~a~-~~-~gv~~~v~~Ss~~~~~~-~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
+.+ .+++ .. ....+||++||...... ..+...|...++-. +.+..-..+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~ 198 (271)
T 3v2g_A 119 IWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELVPWPGISLYSASKAALAGLTKGLARDL 198 (271)
T ss_dssp CCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCCCSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccCCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 110 1111 11 13458999988654432 23344555433211 111111223
Q ss_pred HhcCCCEEEEeccccccCCCCccce---eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQGF---QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~~~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
...+++++.|+||++.......... .+........+.+.+|+|++++.++.... ..|+.+++.+|
T Consensus 199 ~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG 268 (271)
T 3v2g_A 199 GPRGITVNIVHPGSTDTDMNPADGDHAEAQRERIATGSYGEPQDIAGLVAWLAGPQGKFVTGASLTIDGG 268 (271)
T ss_dssp GGGTCEEEEEEECSBCSSSSCSSCSSHHHHHHTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hhhCeEEEEEecCCCcCCcccccchhHHHHHhcCCCCCCCCHHHHHHHHHHHhCcccCCccCCEEEeCcC
Confidence 3468999999999986533211100 01111122345678999999999886543 35888888755
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-13 Score=103.79 Aligned_cols=181 Identities=11% Similarity=0.041 Sum_probs=111.3
Q ss_pred cc--CccHHHHHHHHHhCCCcEEEEEcCch---hhhhh--cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 9 RK--KMNFRMVILSLIVKRTRIKALVKDKR---NAMES--FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 9 ~~--G~iG~~l~~~Ll~~g~~V~~~~R~~~---~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
++ |.||++++++|+++|++|++++|+.. ...+. ......++.+|++|++++.++++ ++|++|++++
T Consensus 17 as~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag 96 (265)
T 1qsg_A 17 VASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIG 96 (265)
T ss_dssp CCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSSEEEEEECCC
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 46 89999999999999999999999872 11111 11235788999999999988876 5799998722
Q ss_pred --------Cchh-----------------------hhhhhc--CCCeEEEeceeeeccCCCCcccccchhHHH--hHHHH
Q 028525 75 --------GFIS-----------------------NAGSLK--GVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 75 --------~~~~-----------------------~a~~~~--gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~ 119 (208)
+.+. +++... .-.+||++||...+.+..+...|..+++-. +.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~l 176 (265)
T 1qsg_A 97 FAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYM 176 (265)
T ss_dssp CCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTTTHHHHHHHHHHHHHHHH
T ss_pred CCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCCCCchHHHHHHHHHHHHHHHH
Confidence 1110 111111 124899999987765443344455433211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCcc-ce-e----eecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGKQ-GF-Q----FEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGE 189 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~~-~~-~----~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~ 189 (208)
...+...+++++.|+||++........ .. . +........+.+.+|+|++++.++.++.. .++.+++.+|.
T Consensus 177 a~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~ 254 (265)
T 1qsg_A 177 ANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGF 254 (265)
T ss_dssp HHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred HHHhhhcCeEEEEEEeCCCccchhhcccccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCccCCEEEECCCc
Confidence 112223589999999999864321110 00 0 00011123456889999999999875432 47889988664
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-13 Score=102.45 Aligned_cols=179 Identities=14% Similarity=0.110 Sum_probs=110.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcC------------chhhh------hhcCCceEEEEcCCCCHHHHHHHhc------
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKD------------KRNAM------ESFGTYVESMAGDASNKKFLKTALR------ 64 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~------------~~~~~------~~~~~~v~~v~~Dl~d~~~l~~~~~------ 64 (208)
++|.||++++++|+++|++|++++|+ .++.. ...+.++.++.+|++|++++.++++
T Consensus 18 as~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 97 (287)
T 3pxx_A 18 GARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSRELANAVAEF 97 (287)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 58899999999999999999999987 22211 1124578999999999999988876
Q ss_pred -CCCEEEEcCC----Cc--------------------hhhhhh-h-cCCCeEEEeceeeeccCC-----------CCccc
Q 028525 65 -GVRSIICPSE----GF--------------------ISNAGS-L-KGVQHVILLSQLSVYRGS-----------GGIQA 106 (208)
Q Consensus 65 -~~d~vi~~~~----~~--------------------~~~a~~-~-~gv~~~v~~Ss~~~~~~~-----------~~~~~ 106 (208)
++|++|++++ .. +.+++. . .+-.+||++||...+... .+...
T Consensus 98 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~ 177 (287)
T 3pxx_A 98 GKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQPPGAGGPQGPGGAG 177 (287)
T ss_dssp SCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCCC-----CHHHHHH
T ss_pred CCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccccccccccccCCCccch
Confidence 7899998732 10 011111 1 233589999998665311 11122
Q ss_pred ccchhHHHhHHH-HH---HHHHhcCCCEEEEeccccccCCCCccc----ee--------------e-ecCCcCCCcccHH
Q 028525 107 LMKGNARKLAEQ-DE---SMLMASGIPYTIIRTGVLQNTPGGKQG----FQ--------------F-EEGCAANGSLSKE 163 (208)
Q Consensus 107 ~~~~~~~~~~~~-~e---~~l~~~~~~~tivRp~~~~~~~~~~~~----~~--------------~-~~~~~~~~~v~~~ 163 (208)
|...+ ..... ++ ..+...++++..|+||++......... +. . ........+.+.+
T Consensus 178 Y~asK--~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 255 (287)
T 3pxx_A 178 YSYAK--QLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLAFPAMQAMPTPYVEAS 255 (287)
T ss_dssp HHHHH--HHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHGGGGCSSSCSCBCHH
T ss_pred HHHHH--HHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccchhhhhccccccchhHHHHhhhhhhcccCCCCCCHH
Confidence 33322 21111 11 122235999999999998654322100 00 0 0011113456789
Q ss_pred HHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 164 DAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 164 Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
|+|++++.++.+.. ..|+++++.+|.
T Consensus 256 dva~~v~fL~s~~a~~itG~~i~vdGG~ 283 (287)
T 3pxx_A 256 DISNAVCFLASDESRYVTGLQFKVDAGA 283 (287)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHhhHheecchhhcCCCCceEeECchh
Confidence 99999999886543 358889888653
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-13 Score=104.57 Aligned_cols=177 Identities=14% Similarity=0.035 Sum_probs=112.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh-------------hhhcCCceEEEEcCCCCHHHHHHHhc-------CCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA-------------MESFGTYVESMAGDASNKKFLKTALR-------GVR 67 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-------------~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d 67 (208)
+++|.||++++++|+++|++|++++|+.++. ....+.++.++.+|++|++++.++++ ++|
T Consensus 16 Gas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 95 (285)
T 3sc4_A 16 GGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAKTVEQFGGID 95 (285)
T ss_dssp SCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHHHHHHHSCCS
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3588999999999999999999999987631 11124578999999999999988876 789
Q ss_pred EEEEcCC----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCC-CCcccccchhHHH--
Q 028525 68 SIICPSE----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGS-GGIQALMKGNARK-- 114 (208)
Q Consensus 68 ~vi~~~~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~-~~~~~~~~~~~~~-- 114 (208)
++|++++ +. ....+++.+..+||++||.....+. .+...|..+++-.
T Consensus 96 ~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~Y~asKaal~~ 175 (285)
T 3sc4_A 96 ICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKYGMTL 175 (285)
T ss_dssp EEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGGGSCSHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCCCCCCchHHHHHHHHHH
Confidence 9998732 10 0112334466799999998765432 2334454433211
Q ss_pred hHHHHHHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC-CCCcEEEEe
Q 028525 115 LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP-QTGLIFEVV 186 (208)
Q Consensus 115 ~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~i~ 186 (208)
+.+.....+...+++++.|+||++.+.+.... . +..........+.+|+|++++.++.++. ..|+.+.+.
T Consensus 176 ~~~~la~e~~~~gI~vn~v~PG~~v~t~~~~~-~-~~~~~~~~r~~~pedvA~~~~~l~s~~~~~tG~~i~~d 246 (285)
T 3sc4_A 176 CALGIAEELRDAGIASNTLWPRTTVATAAVQN-L-LGGDEAMARSRKPEVYADAAYVVLNKPSSYTGNTLLCE 246 (285)
T ss_dssp HHHHHHHHTGGGTCEEEEEECSSCBCCHHHHH-H-HTSCCCCTTCBCTHHHHHHHHHHHTSCTTCCSCEEEHH
T ss_pred HHHHHHHHhcccCcEEEEEeCCCccccHHHHh-h-ccccccccCCCCHHHHHHHHHHHhCCcccccceEEEEc
Confidence 11111122334789999999996444321111 0 1111122345678999999999998765 345666544
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.9e-13 Score=101.71 Aligned_cols=172 Identities=10% Similarity=0.026 Sum_probs=109.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh-------------hhcCCceEEEEcCCCCHHHHHHHhc-------CCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM-------------ESFGTYVESMAGDASNKKFLKTALR-------GVR 67 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~-------------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d 67 (208)
+++|.||++++++|+++|++|++++|+.++.. ...+.++.++.+|++|++++.++++ ++|
T Consensus 13 Gas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 92 (274)
T 3e03_A 13 GASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAATVDTFGGID 92 (274)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 46899999999999999999999999865311 1124568899999999999888875 689
Q ss_pred EEEEcCCC----ch--------------------------hhhhhhcCCCeEEEeceeeeccC--CCCcccccchhHHH-
Q 028525 68 SIICPSEG----FI--------------------------SNAGSLKGVQHVILLSQLSVYRG--SGGIQALMKGNARK- 114 (208)
Q Consensus 68 ~vi~~~~~----~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~--~~~~~~~~~~~~~~- 114 (208)
++|++++. .. ...+.+.+..+||++||...+.. ..+...|..+++-.
T Consensus 93 ~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~~Y~asKaal~ 172 (274)
T 3e03_A 93 ILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMS 172 (274)
T ss_dssp EEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHHHHHHCHHHHHHHHHHH
T ss_pred EEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCCCCCCCchHHHHHHHHH
Confidence 99987321 10 11234456679999999876543 22233454433211
Q ss_pred -hHHHHHHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEE
Q 028525 115 -LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIF 183 (208)
Q Consensus 115 -~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~ 183 (208)
+.+.....+...++++..|+||++.+.+... . + .........+.+|+|++++.++.++.. .|+.+
T Consensus 173 ~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~~--~-~-~~~~~~~~~~pedvA~~v~~l~s~~~~~itG~~i 240 (274)
T 3e03_A 173 LVTLGLAAEFGPQGVAINALWPRTVIATDAIN--M-L-PGVDAAACRRPEIMADAAHAVLTREAAGFHGQFL 240 (274)
T ss_dssp HHHHHHHHHHGGGTCEEEEEECSBCBCC-----------CCCGGGSBCTHHHHHHHHHHHTSCCTTCCSCEE
T ss_pred HHHHHHHHHhhhcCEEEEEEECCcccccchhh--h-c-ccccccccCCHHHHHHHHHHHhCccccccCCeEE
Confidence 1111112234468999999999654433221 1 1 111123356789999999999876543 46666
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=104.24 Aligned_cols=178 Identities=8% Similarity=0.005 Sum_probs=114.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------cCCceEEEEcCC--CCHHHHHHHhc-------CCCEEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------FGTYVESMAGDA--SNKKFLKTALR-------GVRSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~~~~v~~v~~Dl--~d~~~l~~~~~-------~~d~vi~ 71 (208)
+++|.||++++++|+++|++|++++|+.++..+. ....+.++.+|+ +|.+++.++++ ++|++|+
T Consensus 19 Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~ 98 (252)
T 3f1l_A 19 GASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLH 98 (252)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHHCSCCSEEEE
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 3589999999999999999999999997763221 123688999999 89988888775 6899998
Q ss_pred cCCC-----ch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHH
Q 028525 72 PSEG-----FI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDE 120 (208)
Q Consensus 72 ~~~~-----~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e 120 (208)
+++. .+ ...+++.+..+||++||...+.+..+...|..+++-... .++
T Consensus 99 nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~-l~~ 177 (252)
T 3f1l_A 99 NAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEG-MMQ 177 (252)
T ss_dssp CCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCCTTCHHHHHHHHHHHH-HHH
T ss_pred CCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCCCCCchhHHHHHHHHH-HHH
Confidence 7321 10 112345667799999998876654444556553321110 111
Q ss_pred HHHHh--cCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCc
Q 028525 121 SMLMA--SGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEE 190 (208)
Q Consensus 121 ~~l~~--~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~ 190 (208)
.+-++ ..+++..|.||++..... .. . . .........+.+|+|.+++.++.++. ..|+.+++.+|..
T Consensus 178 ~la~e~~~~irvn~v~PG~v~t~~~-~~-~-~-~~~~~~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdgG~~ 247 (252)
T 3f1l_A 178 VLADEYQQRLRVNCINPGGTRTAMR-AS-A-F-PTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRK 247 (252)
T ss_dssp HHHHHTTTTCEEEEEECCSBSSHHH-HH-H-C-TTCCGGGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSCC--
T ss_pred HHHHHhcCCcEEEEEecCcccCchh-hh-h-C-CccchhccCCHHHHHHHHHHHcCccccCCCCCEEEeCCCcC
Confidence 11112 238999999998853211 00 0 0 11112334577999999999887654 3588999887664
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-12 Score=98.31 Aligned_cols=179 Identities=11% Similarity=0.055 Sum_probs=115.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc--CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF--GTYVESMAGDASNKKFLKTALR-------GVRSIICPSE---- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~--~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~---- 74 (208)
++++.||+++++.|+++|++|.+.+|+.++..+.. ..++..+.+|++|++++.++++ +.|++|++++
T Consensus 9 Gas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVNNAG~~~~ 88 (247)
T 3ged_A 9 GGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVNNACRGSK 88 (247)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred cCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 46788999999999999999999999987644332 3468899999999999888763 5799997632
Q ss_pred Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhc
Q 028525 75 GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMAS 126 (208)
Q Consensus 75 ~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~ 126 (208)
+.+ ...+.+.+ .++|++||.....+......|..+++-. +.+..-..+. .
T Consensus 89 ~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-G~IInisS~~~~~~~~~~~~Y~asKaal~~ltk~lA~ela-~ 166 (247)
T 3ged_A 89 GILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK-GRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLG-P 166 (247)
T ss_dssp CGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CcEEEEeecccccCCCCCHHHHHHHHHHHHHHHHHHHHHC-C
Confidence 110 11233344 5899999988766544445565543211 1111112233 4
Q ss_pred CCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC
Q 028525 127 GIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNG 188 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~ 188 (208)
++++..|.||++.........-......+....-..+|||.+++.++..+--.|+.+.+.+|
T Consensus 167 ~IrVN~I~PG~i~t~~~~~~~~~~~~~~Pl~R~g~pediA~~v~fL~s~~~iTG~~i~VDGG 228 (247)
T 3ged_A 167 DVLVNCIAPGWINVTEQQEFTQEDCAAIPAGKVGTPKDISNMVLFLCQQDFITGETIIVDGG 228 (247)
T ss_dssp TSEEEEEEECSBCCCC---CCHHHHHTSTTSSCBCHHHHHHHHHHHHHCSSCCSCEEEESTT
T ss_pred CCEEEEEecCcCCCCCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhCCCCCCCeEEECcC
Confidence 89999999998843221110000111112233446799999999998754445888888754
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-12 Score=101.20 Aligned_cols=181 Identities=8% Similarity=-0.013 Sum_probs=110.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-hh------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-AM------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|+++.|+... .. ...+.++.++.+|++|++++.++++ +.|++|+++
T Consensus 25 Gas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA 104 (270)
T 3is3_A 25 GSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNS 104 (270)
T ss_dssp CTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 358899999999999999999998876433 11 1124578999999999999988875 679999772
Q ss_pred C----Cch----------------------hhhhhhc--CCCeEEEeceeeec-cCCCCcccccchhHHH--hHHHHHHH
Q 028525 74 E----GFI----------------------SNAGSLK--GVQHVILLSQLSVY-RGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 74 ~----~~~----------------------~~a~~~~--gv~~~v~~Ss~~~~-~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
+ +.+ .+++... .-.+||++||.... .+..+...|..+++-. +.+.....
T Consensus 105 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e 184 (270)
T 3is3_A 105 GVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKD 184 (270)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 2 110 1111111 12489999997633 2223334454433211 11111122
Q ss_pred HHhcCCCEEEEeccccccCCCCcc---------cee-------eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEE
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQ---------GFQ-------FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFE 184 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~---------~~~-------~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~ 184 (208)
+...++++..|+||++........ ... +....+.....+.+|+|++++.++.+.. ..|+.++
T Consensus 185 ~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~ 264 (270)
T 3is3_A 185 CGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANVVGFLVSKEGEWVNGKVLT 264 (270)
T ss_dssp HGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHSTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEE
T ss_pred hcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCccCCccCcEEE
Confidence 334699999999999854321100 000 0001122334567999999999986543 3488888
Q ss_pred EeeC
Q 028525 185 VVNG 188 (208)
Q Consensus 185 i~~~ 188 (208)
+.+|
T Consensus 265 vdGG 268 (270)
T 3is3_A 265 LDGG 268 (270)
T ss_dssp ESTT
T ss_pred eCCC
Confidence 8755
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=8.6e-13 Score=102.47 Aligned_cols=180 Identities=13% Similarity=0.060 Sum_probs=114.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCc-hhhhh-------hcCCceEEEEcCCCC----HHHHHHHhc-------CCCE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDK-RNAME-------SFGTYVESMAGDASN----KKFLKTALR-------GVRS 68 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~-~~~~~-------~~~~~v~~v~~Dl~d----~~~l~~~~~-------~~d~ 68 (208)
+++|.||++++++|+++|++|++++|+. ++..+ ..+.++.++.+|++| ++++.++++ ++|+
T Consensus 30 Gas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~~~~~g~iD~ 109 (288)
T 2x9g_A 30 GAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDV 109 (288)
T ss_dssp TCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHHHHhcCCCCE
Confidence 3589999999999999999999999997 54211 124468899999999 888888775 6899
Q ss_pred EEEcCC----Cch-----hh-------------------------------hhhhcC------CCeEEEeceeeeccCCC
Q 028525 69 IICPSE----GFI-----SN-------------------------------AGSLKG------VQHVILLSQLSVYRGSG 102 (208)
Q Consensus 69 vi~~~~----~~~-----~~-------------------------------a~~~~g------v~~~v~~Ss~~~~~~~~ 102 (208)
+|++++ ..+ .+ .+.+.+ ..+||++||...+.+..
T Consensus 110 lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 189 (288)
T 2x9g_A 110 LVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCM 189 (288)
T ss_dssp EEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEEECCTTTTSCCT
T ss_pred EEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEEecccccCCCC
Confidence 998722 101 00 112223 46999999988765444
Q ss_pred CcccccchhHHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCccc-e--eeecCCcCCCc-ccHHHHHHHHHHHhhCC
Q 028525 103 GIQALMKGNARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQG-F--QFEEGCAANGS-LSKEDAAFICVEALESI 176 (208)
Q Consensus 103 ~~~~~~~~~~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~-~--~~~~~~~~~~~-v~~~Dva~~~~~~l~~~ 176 (208)
+...|..+++-. +.+.....+...+++++.|+||.+.... .... . .+......... .+.+|+|++++.++..+
T Consensus 190 ~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~~~~~~~~~~~~~~p~~r~~~~pedvA~~v~~l~s~~ 268 (288)
T 2x9g_A 190 AFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-AMGEEEKDKWRRKVPLGRREASAEQIADAVIFLVSGS 268 (288)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-TSCHHHHHHHHHTCTTTSSCCCHHHHHHHHHHHHSGG
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-ccChHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCcc
Confidence 444555533211 1111112233468999999999986543 1100 0 01011112234 68899999999998754
Q ss_pred C--CCCcEEEEeeC
Q 028525 177 P--QTGLIFEVVNG 188 (208)
Q Consensus 177 ~--~~~~~~~i~~~ 188 (208)
. ..|+.+.+.+|
T Consensus 269 ~~~itG~~i~vdGG 282 (288)
T 2x9g_A 269 AQYITGSIIKVDGG 282 (288)
T ss_dssp GTTCCSCEEEESTT
T ss_pred ccCccCCEEEECcc
Confidence 3 34778887754
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.7e-13 Score=103.27 Aligned_cols=180 Identities=11% Similarity=-0.033 Sum_probs=116.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEE-cCchhhhh-------hcCCceEEEEcCCCCHH-----------------HHHHH
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALV-KDKRNAME-------SFGTYVESMAGDASNKK-----------------FLKTA 62 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~-R~~~~~~~-------~~~~~v~~v~~Dl~d~~-----------------~l~~~ 62 (208)
+++|.||++++++|+++|++|++++ |+.++..+ ..+.++.++.+|++|++ ++.++
T Consensus 16 Gas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~~~v~~~ 95 (291)
T 1e7w_A 16 GAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLFTRCAEL 95 (291)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccccccchHHHHHHH
Confidence 3589999999999999999999999 88765321 12456899999999998 88887
Q ss_pred hc-------CCCEEEEcCC----Cc----h--------------h----------------------hhhhhcC------
Q 028525 63 LR-------GVRSIICPSE----GF----I--------------S----------------------NAGSLKG------ 85 (208)
Q Consensus 63 ~~-------~~d~vi~~~~----~~----~--------------~----------------------~a~~~~g------ 85 (208)
++ .+|++|++++ +. . . ..+.+.+
T Consensus 96 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~~~~~ 175 (291)
T 1e7w_A 96 VAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGT 175 (291)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCGGGSCS
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 75 6899998732 10 0 0 1122344
Q ss_pred CCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCc-cce--eeecCCcCC-Cc
Q 028525 86 VQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGK-QGF--QFEEGCAAN-GS 159 (208)
Q Consensus 86 v~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~-~~~--~~~~~~~~~-~~ 159 (208)
..+||++||...+.+..+...|..+++-. +.+.....+...+++++.|+||++.... .. ... .+....... .+
T Consensus 176 ~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~-~~~~~~~~~~~~~~p~~~r~ 254 (291)
T 1e7w_A 176 NYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD-DMPPAVWEGHRSKVPLYQRD 254 (291)
T ss_dssp CEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG-GSCHHHHHHHHTTCTTTTSC
T ss_pred CcEEEEEechhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCccCCc-cCCHHHHHHHHhhCCCCCCC
Confidence 57999999988765444444555533211 1111122234568999999999974332 10 000 000111112 45
Q ss_pred ccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 160 LSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 160 v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+.+|+|++++.++..+. ..|+.+.+.+|
T Consensus 255 ~~pedvA~~v~~l~s~~~~~itG~~i~vdGG 285 (291)
T 1e7w_A 255 SSAAEVSDVVIFLCSSKAKYITGTCVKVDGG 285 (291)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCHHHHHHHHHHHhCCcccCccCcEEEECCC
Confidence 678999999999987543 35778887755
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=103.13 Aligned_cols=177 Identities=11% Similarity=0.033 Sum_probs=113.8
Q ss_pred cccCccHHHHHHHHHh-CCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-----CCCEEEEcCCC----ch
Q 028525 8 KRKKMNFRMVILSLIV-KRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-----GVRSIICPSEG----FI 77 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~-~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-----~~d~vi~~~~~----~~ 77 (208)
+++|.||++++++|++ .|++|++..|+.+.. ...+.++.+|++|++++.++++ ++|++|++++. .+
T Consensus 11 Gas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~id~lv~nAg~~~~~~~ 86 (244)
T 4e4y_A 11 GGSKGIGKAVVELLLQNKNHTVINIDIQQSFS----AENLKFIKADLTKQQDITNVLDIIKNVSFDGIFLNAGILIKGSI 86 (244)
T ss_dssp TTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC----CTTEEEEECCTTCHHHHHHHHHHTTTCCEEEEEECCCCCCCBCT
T ss_pred CCCChHHHHHHHHHHhcCCcEEEEeccccccc----cccceEEecCcCCHHHHHHHHHHHHhCCCCEEEECCccCCCCCc
Confidence 4689999999999999 789999999876522 2357899999999999999886 67999987321 10
Q ss_pred ----------------------hhhhhhc--CCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCCCEE
Q 028525 78 ----------------------SNAGSLK--GVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGIPYT 131 (208)
Q Consensus 78 ----------------------~~a~~~~--gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~~~t 131 (208)
.+++... .-.+||++||...+.+..+...|..+++-. +.+.....+...+++++
T Consensus 87 ~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~ 166 (244)
T 4e4y_A 87 FDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVN 166 (244)
T ss_dssp TTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred ccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCCCCCchhHHHHHHHHHHHHHHHHHHHHcCeEEE
Confidence 0111111 014899999988776544445565533211 11111122335699999
Q ss_pred EEeccccccCCCCcc--------------c-eeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 132 IIRTGVLQNTPGGKQ--------------G-FQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 132 ivRp~~~~~~~~~~~--------------~-~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.|+||.+........ . ..+........+.+.+|+|++++.++.++. ..|+.+++.+|
T Consensus 167 ~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG 240 (244)
T 4e4y_A 167 TVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQPQEIAELVIFLLSDKSKFMTGGLIPIDGG 240 (244)
T ss_dssp EEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHhcCccccccCCeEeECCC
Confidence 999999853211000 0 001111223456688999999999987654 34788888755
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-12 Score=99.81 Aligned_cols=184 Identities=13% Similarity=0.126 Sum_probs=110.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcC-chhhh----h--hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKD-KRNAM----E--SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~-~~~~~----~--~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|+++.|+ .+... + ..+.++.++.+|++|++++.++++ ++|++|+++
T Consensus 15 Gas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 94 (259)
T 3edm_A 15 GAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGEIHGLVHVA 94 (259)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEECC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 358899999999999999999998554 33321 1 124468899999999999988886 679999873
Q ss_pred CCc-----h----------------------hhhhhhc--CCCeEEEeceeeec-cCCCCcccccchhHHHhHHHHHHHH
Q 028525 74 EGF-----I----------------------SNAGSLK--GVQHVILLSQLSVY-RGSGGIQALMKGNARKLAEQDESML 123 (208)
Q Consensus 74 ~~~-----~----------------------~~a~~~~--gv~~~v~~Ss~~~~-~~~~~~~~~~~~~~~~~~~~~e~~l 123 (208)
+.. + .+++... .-.+||++||...+ .+..+...|..+++-... .++.+-
T Consensus 95 g~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~-l~~~la 173 (259)
T 3edm_A 95 GGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGGGPGALAYATSKGAVMT-FTRGLA 173 (259)
T ss_dssp CCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCCSTTCHHHHHHHHHHHH-HHHHHH
T ss_pred CccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCCCCCcHHHHHHHHHHHH-HHHHHH
Confidence 210 0 0111111 12389999998776 433344456553321111 111111
Q ss_pred Hh--cCCCEEEEeccccccCCCCcc--c-e--eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCCcch
Q 028525 124 MA--SGIPYTIIRTGVLQNTPGGKQ--G-F--QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGEEKV 192 (208)
Q Consensus 124 ~~--~~~~~tivRp~~~~~~~~~~~--~-~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~~~~ 192 (208)
.+ ..+++..|+||.+........ . . .+....+.....+.+|+|++++.++.++.. .|+.+++.+|....
T Consensus 174 ~e~~~~I~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGg~~~~ 251 (259)
T 3edm_A 174 KEVGPKIRVNAVCPGMISTTFHDTFTKPEVRERVAGATSLKREGSSEDVAGLVAFLASDDAAYVTGACYDINGGVLFS 251 (259)
T ss_dssp HHHTTTCEEEEEEECCBCC----------------------CCBCHHHHHHHHHHHHSGGGTTCCSCEEEESBCSSBC
T ss_pred HHHCCCCEEEEEEECCCcCcccccccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEECCCcCCC
Confidence 11 249999999999854322110 0 0 011111223455789999999998875532 58999998776543
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-13 Score=102.09 Aligned_cols=176 Identities=12% Similarity=-0.025 Sum_probs=98.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc-CCceEEEEcCCCCHHHHH---HHh---cCCCEEEEcCC----Cc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF-GTYVESMAGDASNKKFLK---TAL---RGVRSIICPSE----GF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~~~l~---~~~---~~~d~vi~~~~----~~ 76 (208)
+++|.||++++++|++ |++|++++|+.++..... ..++.++.+|+.|.++.. +.+ .++|++|++++ +.
T Consensus 12 Gas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~~Ag~~~~~~ 90 (245)
T 3e9n_A 12 GATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVHAAAVARDTT 90 (245)
T ss_dssp STTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEECC-------
T ss_pred cCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEEEECCCcCCCCc
Confidence 4699999999999987 999999999987644322 246899999998875421 122 25799998732 10
Q ss_pred --------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCC
Q 028525 77 --------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGI 128 (208)
Q Consensus 77 --------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~ 128 (208)
....+++.+ .+||++||...+.+..+...|..+++.. +.+.....+...++
T Consensus 91 ~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi 169 (245)
T 3e9n_A 91 IEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANNGI 169 (245)
T ss_dssp ---CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC----------CHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred hhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEcCcccccCCCCchHHHHHHHHHHHHHHHHHHHhhhcCe
Confidence 001123334 6899999988776544455565533211 11111112234689
Q ss_pred CEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEe
Q 028525 129 PYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVV 186 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~ 186 (208)
+++.|+||.+....................+++.+|+|++++.+++.+. .+.++++.
T Consensus 170 ~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~dvA~~i~~l~~~~~-~~~~~~i~ 226 (245)
T 3e9n_A 170 RVSTVSPGPTNTPMLQGLMDSQGTNFRPEIYIEPKEIANAIRFVIDAGE-TTQITNVD 226 (245)
T ss_dssp EEEEEEECCC----------------CCGGGSCHHHHHHHHHHHHTSCT-TEEEEEEE
T ss_pred EEEEEecCCccCchhhhhhhhhhcccccccCCCHHHHHHHHHHHHcCCC-ccceeeeE
Confidence 9999999998653322110001111122446788999999999998665 34666654
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9.7e-13 Score=101.80 Aligned_cols=181 Identities=9% Similarity=0.034 Sum_probs=114.5
Q ss_pred ccCc--cHHHHHHHHHhCCCcEEEEEcCc--hhhhhh--cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-
Q 028525 9 RKKM--NFRMVILSLIVKRTRIKALVKDK--RNAMES--FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE- 74 (208)
Q Consensus 9 ~~G~--iG~~l~~~Ll~~g~~V~~~~R~~--~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~- 74 (208)
++|. ||++++++|+++|++|++++|+. +...+. ...++.++.+|++|.+++.++++ ..|++|++++
T Consensus 34 asg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nAg~ 113 (280)
T 3nrc_A 34 LLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDGLDAIVHSIAF 113 (280)
T ss_dssp CCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSSCCEEEECCCC
T ss_pred CCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 4555 99999999999999999999987 332222 12358899999999999888875 4699998722
Q ss_pred -------Cch-----------------------hhhhh---hcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHH
Q 028525 75 -------GFI-----------------------SNAGS---LKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 75 -------~~~-----------------------~~a~~---~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~ 119 (208)
+.. .+++. .....+||++||...+.+..+...|..+++-. +.+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~~~~l 193 (280)
T 3nrc_A 114 APRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMPSYNTMGVAKASLEATVRYT 193 (280)
T ss_dssp CCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSCCTTTHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccCCCCchhhHHHHHHHHHHHHHH
Confidence 110 00111 11246999999988776544445555433211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCccc----e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGKQG----F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~~~----~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
...+...+++++.|+||.+......... . .+..........+.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 194 a~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~~~~pedvA~~v~~l~s~~~~~~tG~~i~vdgG~ 271 (280)
T 3nrc_A 194 ALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSPLKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAGY 271 (280)
T ss_dssp HHHHGGGTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHSTTCSCCCHHHHHHHHHHTTSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHcCcEEEEEeeccccchhhhcCcchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcccCCcCCcEEEECCCc
Confidence 1223347899999999998643211100 0 00011122445678999999999887543 358899988665
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-12 Score=99.46 Aligned_cols=158 Identities=13% Similarity=-0.016 Sum_probs=102.7
Q ss_pred cccCccHHHHHHHHHh-CCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIV-KRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~-~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|++ +|++|++++|+.++.... .+.++.++.+|++|.+++.++++ ++|+||+++
T Consensus 11 GasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~A 90 (276)
T 1wma_A 11 GGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNA 90 (276)
T ss_dssp SCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSEEEEEECC
T ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 4699999999999999 999999999987653211 13468999999999999998886 789999873
Q ss_pred CCc--------------------------hhhhhhhc--CCCeEEEeceeeeccC--C----------------------
Q 028525 74 EGF--------------------------ISNAGSLK--GVQHVILLSQLSVYRG--S---------------------- 101 (208)
Q Consensus 74 ~~~--------------------------~~~a~~~~--gv~~~v~~Ss~~~~~~--~---------------------- 101 (208)
+.. +.+++... ...+||++||..++.. .
T Consensus 91 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 170 (276)
T 1wma_A 91 GIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGL 170 (276)
T ss_dssp CCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSSCCHHHHHHH
T ss_pred cccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhccccccchhhhhhh
Confidence 210 01111111 1248999999766521 0
Q ss_pred -----------------CCcccccchhHH--HhHHHHHHHHHh----cCCCEEEEeccccccCCCCccceeeecCCcCCC
Q 028525 102 -----------------GGIQALMKGNAR--KLAEQDESMLMA----SGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANG 158 (208)
Q Consensus 102 -----------------~~~~~~~~~~~~--~~~~~~e~~l~~----~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~ 158 (208)
.+...|..++.. .+.+.....+.. .+++++.|+||++....... ..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~-----------~~ 239 (276)
T 1wma_A 171 MNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP-----------KA 239 (276)
T ss_dssp HHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT-----------TC
T ss_pred hhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc-----------cc
Confidence 011233332211 111111112223 58999999999985432211 24
Q ss_pred cccHHHHHHHHHHHhhCC
Q 028525 159 SLSKEDAAFICVEALESI 176 (208)
Q Consensus 159 ~v~~~Dva~~~~~~l~~~ 176 (208)
+.+.+|+|+.++.++..+
T Consensus 240 ~~~~~~~a~~~~~l~~~~ 257 (276)
T 1wma_A 240 TKSPEEGAETPVYLALLP 257 (276)
T ss_dssp SBCHHHHTHHHHHHHSCC
T ss_pred cCChhHhhhhHhhhhcCc
Confidence 578999999999999755
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-13 Score=103.02 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=111.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC-------CCEEEEcCCC-----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG-------VRSIICPSEG----- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~-------~d~vi~~~~~----- 75 (208)
+++|.||++++++|+++|++|++++|+.++.. -..+.+|++|.+++.++++. +|++|++++.
T Consensus 29 Gas~gIG~~la~~l~~~G~~V~~~~r~~~~~~------~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~ 102 (251)
T 3orf_A 29 GGSGALGAEVVKFFKSKSWNTISIDFRENPNA------DHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGN 102 (251)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS------SEEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECCCCCCCBC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCccccc------ccceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCC
Confidence 46999999999999999999999999986643 14567899999998888753 4999987321
Q ss_pred -c---------------------hhhhhhhc--CCCeEEEeceeeeccCCCCcccccchhHHHhHHH-HHHHHH-----h
Q 028525 76 -F---------------------ISNAGSLK--GVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-DESMLM-----A 125 (208)
Q Consensus 76 -~---------------------~~~a~~~~--gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~e~~l~-----~ 125 (208)
. +.+++... .-.+||++||...+.+..+...|...+ ...+. ++.+-. .
T Consensus 103 ~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK--aa~~~~~~~la~e~~~~~ 180 (251)
T 3orf_A 103 ASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRTSGMIAYGATK--AATHHIIKDLASENGGLP 180 (251)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHH--HHHHHHHHHHTSTTSSSC
T ss_pred cccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccCCCCCchhHHHH--HHHHHHHHHHHHHhcccC
Confidence 0 01111111 124899999988776544445555433 21111 111111 2
Q ss_pred cCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhC---CCCCCcEEEEeeCC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALES---IPQTGLIFEVVNGE 189 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~---~~~~~~~~~i~~~~ 189 (208)
.+++++.|+||++..... .. +........+.+.+|+|++++.++.+ +...|+.+++.++.
T Consensus 181 ~gi~v~~v~PG~v~t~~~-~~---~~~~~~~~~~~~~~dva~~i~~l~~~~~~~~~tG~~i~v~~g~ 243 (251)
T 3orf_A 181 AGSTSLGILPVTLDTPTN-RK---YMSDANFDDWTPLSEVAEKLFEWSTNSDSRPTNGSLVKFETKS 243 (251)
T ss_dssp TTCEEEEEEESCBCCHHH-HH---HCTTSCGGGSBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEET
T ss_pred CCcEEEEEecCcCcCcch-hh---hcccccccccCCHHHHHHHHHHHhcCccccCCcceEEEEecCC
Confidence 579999999998843211 10 11112234567889999999999987 23468899988654
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.9e-13 Score=101.19 Aligned_cols=180 Identities=9% Similarity=0.013 Sum_probs=113.4
Q ss_pred cccCccHHHHHHHHHhCC--CcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-
Q 028525 8 KRKKMNFRMVILSLIVKR--TRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~- 74 (208)
+++|.||++++++|+++| +.|++..|+.++..+ ..+.++.++.+|++|++++.++++ +.|++|++++
T Consensus 9 Gas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~ 88 (254)
T 3kzv_A 9 GVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGV 88 (254)
T ss_dssp STTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEEECCC
T ss_pred CCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCccEEEECCcc
Confidence 568999999999999985 789889998776432 234578999999999999988875 6799997622
Q ss_pred ----Cc----------------------h----hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHH
Q 028525 75 ----GF----------------------I----SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLM 124 (208)
Q Consensus 75 ----~~----------------------~----~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~ 124 (208)
+. . ...+++.+ .+||++||...+.+..+...|..+++-... .++.+-.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~~~~~~~~Y~asK~a~~~-~~~~la~ 166 (254)
T 3kzv_A 89 LEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNMYFSSWGAYGSSKAALNH-FAMTLAN 166 (254)
T ss_dssp CCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCCSSCCSHHHHHHHHHHHH-HHHHHHH
T ss_pred cCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhccCCCCcchHHHHHHHHHH-HHHHHHh
Confidence 10 0 01124445 799999998877654444556553321110 1111111
Q ss_pred h-cCCCEEEEeccccccCCCCccceee-------------ecCCcCCCcccHHHHHHHHHHHhhCCC---CCCcEEEEee
Q 028525 125 A-SGIPYTIIRTGVLQNTPGGKQGFQF-------------EEGCAANGSLSKEDAAFICVEALESIP---QTGLIFEVVN 187 (208)
Q Consensus 125 ~-~~~~~tivRp~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~~Dva~~~~~~l~~~~---~~~~~~~i~~ 187 (208)
+ .++++..|+||++............ ..........+.+|+|++++.++.++. ..|+.+++.+
T Consensus 167 e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~dva~~v~~L~s~~~~~~itG~~i~vdg 246 (254)
T 3kzv_A 167 EERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVYAKLALHGIPDGVNGQYLSYND 246 (254)
T ss_dssp HCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHHTTC----CHHHHHHHHHHHHHCCCGGGTTCEEETTC
T ss_pred hccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHHhcCCcCCcccHHHHHHHHHhhcccCCCCccEEEecC
Confidence 2 5899999999998643321110000 000011234566999999999987663 3578888775
Q ss_pred CC
Q 028525 188 GE 189 (208)
Q Consensus 188 ~~ 189 (208)
+.
T Consensus 247 ~~ 248 (254)
T 3kzv_A 247 PA 248 (254)
T ss_dssp GG
T ss_pred cc
Confidence 44
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-12 Score=98.43 Aligned_cols=183 Identities=13% Similarity=0.027 Sum_probs=115.3
Q ss_pred cccCc--cHHHHHHHHHhCCCcEEEEEcCchhh---h---hhcCC-ceEEEEcCCCCHHHHHHHhc-------CCCEEEE
Q 028525 8 KRKKM--NFRMVILSLIVKRTRIKALVKDKRNA---M---ESFGT-YVESMAGDASNKKFLKTALR-------GVRSIIC 71 (208)
Q Consensus 8 ~~~G~--iG~~l~~~Ll~~g~~V~~~~R~~~~~---~---~~~~~-~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~ 71 (208)
+++|. ||++++++|+++|++|+++.|+.+.. . ...+. ++.++.+|++|++++.++++ .+|++|+
T Consensus 14 Gasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~ 93 (266)
T 3oig_A 14 GVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAH 93 (266)
T ss_dssp CCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHHSCCCEEEE
T ss_pred cCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHhCCeeEEEE
Confidence 35777 99999999999999999999986431 1 11222 68999999999999888875 5799998
Q ss_pred cCC--------Cch----------------------hhhhhhc--CCCeEEEeceeeeccCCCCcccccchhHHH--hHH
Q 028525 72 PSE--------GFI----------------------SNAGSLK--GVQHVILLSQLSVYRGSGGIQALMKGNARK--LAE 117 (208)
Q Consensus 72 ~~~--------~~~----------------------~~a~~~~--gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~ 117 (208)
+++ ... .+++... .-.+||++||...+.+......|..+++-. +.+
T Consensus 94 ~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~ 173 (266)
T 3oig_A 94 CIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVMPNYNVMGVAKASLDASVK 173 (266)
T ss_dssp CCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCTTTHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccccCCCcchhHHHHHHHHHHHH
Confidence 722 110 0111111 124899999988776544444555433211 111
Q ss_pred HHHHHHHhcCCCEEEEeccccccCCCCcc-c---e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 118 QDESMLMASGIPYTIIRTGVLQNTPGGKQ-G---F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 118 ~~e~~l~~~~~~~tivRp~~~~~~~~~~~-~---~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.....+...+++++.|+||.+........ . . .+..........+.+|+|++++.++.++. ..|+.+++.+|-
T Consensus 174 ~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdGG~ 253 (266)
T 3oig_A 174 YLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGF 253 (266)
T ss_dssp HHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHhhcCcEEEEEecCcccccccccccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCchhcCcCCEEEECCCe
Confidence 11122334689999999999854221110 0 0 00011122445688999999999987643 458889988655
Q ss_pred c
Q 028525 190 E 190 (208)
Q Consensus 190 ~ 190 (208)
.
T Consensus 254 ~ 254 (266)
T 3oig_A 254 H 254 (266)
T ss_dssp G
T ss_pred E
Confidence 3
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-13 Score=104.27 Aligned_cols=172 Identities=10% Similarity=0.043 Sum_probs=110.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc---------CCCEEEEcCC----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR---------GVRSIICPSE---- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~---------~~d~vi~~~~---- 74 (208)
+++|.||++++++|+++|++|++++|++++.. ....++.+|++|++++.++++ ++|++|++++
T Consensus 14 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~lv~~Ag~~~~ 89 (241)
T 1dhr_A 14 GGRGALGSRCVQAFRARNWWVASIDVVENEEA----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAG 89 (241)
T ss_dssp TTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc----CCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEEEEcccccCC
Confidence 36999999999999999999999999876533 235778899999999888875 5799998732
Q ss_pred Cch-----------------------hhhhhhc--CCCeEEEeceeeeccCCCCcccccchhHHHhHHH-HHHH---HH-
Q 028525 75 GFI-----------------------SNAGSLK--GVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-DESM---LM- 124 (208)
Q Consensus 75 ~~~-----------------------~~a~~~~--gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~e~~---l~- 124 (208)
+.. .+++... .-.+||++||...+.+..+...|..++ ...+. ++.+ +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK--~a~~~~~~~la~e~~~ 167 (241)
T 1dhr_A 90 GNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAK--GAVHQLCQSLAGKNSG 167 (241)
T ss_dssp BCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHH--HHHHHHHHHHTSTTSS
T ss_pred CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCCCCchHHHHHH--HHHHHHHHHHHHHhcc
Confidence 100 0111110 125899999988776444444554432 21111 1111 12
Q ss_pred -hcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCC
Q 028525 125 -ASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGE 189 (208)
Q Consensus 125 -~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~ 189 (208)
..+++++.|+||++..... .. . . ........++.+|+|++++.++..+.. .|+.+.+.++.
T Consensus 168 ~~~gi~v~~v~PG~v~T~~~-~~-~-~-~~~~~~~~~~~~~vA~~v~~l~~~~~~~~~G~~~~v~g~~ 231 (241)
T 1dhr_A 168 MPSGAAAIAVLPVTLDTPMN-RK-S-M-PEADFSSWTPLEFLVETFHDWITGNKRPNSGSLIQVVTTD 231 (241)
T ss_dssp CCTTCEEEEEEESCEECHHH-HH-H-S-TTSCGGGSEEHHHHHHHHHHHHTTTTCCCTTCEEEEEEET
T ss_pred CCCCeEEEEEecCcccCccc-cc-c-C-cchhhccCCCHHHHHHHHHHHhcCCCcCccceEEEEeCCC
Confidence 3469999999998743211 10 0 0 011123456789999999999876542 47888887644
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-13 Score=104.01 Aligned_cols=172 Identities=6% Similarity=-0.007 Sum_probs=110.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc---------CCCEEEEcCC----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR---------GVRSIICPSE---- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~---------~~d~vi~~~~---- 74 (208)
+++|.||++++++|+++|++|++++|++++.. ....++.+|++|++++.++++ ++|++|++++
T Consensus 10 Gas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~ 85 (236)
T 1ooe_A 10 GGKGALGSAILEFFKKNGYTVLNIDLSANDQA----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAG 85 (236)
T ss_dssp TTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEecCccccc----cccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEEECCcccCC
Confidence 56999999999999999999999999876633 235778899999999888775 6799998732
Q ss_pred ----Cch-------------------hhhhhhc--CCCeEEEeceeeeccCCCCcccccchhHHHhHHH-HHHH---HH-
Q 028525 75 ----GFI-------------------SNAGSLK--GVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQ-DESM---LM- 124 (208)
Q Consensus 75 ----~~~-------------------~~a~~~~--gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~-~e~~---l~- 124 (208)
... .+++... ...+||++||...+.+..+...|..++ ...+. ++.+ +.
T Consensus 86 ~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK--~a~~~~~~~la~e~~~ 163 (236)
T 1ooe_A 86 GSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTPSMIGYGMAK--AAVHHLTSSLAAKDSG 163 (236)
T ss_dssp BCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHH--HHHHHHHHHHHSTTSS
T ss_pred CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccCCCCcHHHHHHH--HHHHHHHHHHHHHhcc
Confidence 110 0111111 124899999988775444444554432 21111 1111 11
Q ss_pred -hcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC---CCCcEEEEeeCC
Q 028525 125 -ASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP---QTGLIFEVVNGE 189 (208)
Q Consensus 125 -~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~---~~~~~~~i~~~~ 189 (208)
..+++++.|+||++..... .. . . ........++.+|+|++++.++..+. ..|+.+.+.++.
T Consensus 164 ~~~gi~v~~v~Pg~v~t~~~-~~-~-~-~~~~~~~~~~~~dvA~~i~~~l~s~~~~~~~G~~~~v~gg~ 228 (236)
T 1ooe_A 164 LPDNSAVLTIMPVTLDTPMN-RK-W-M-PNADHSSWTPLSFISEHLLKWTTETSSRPSSGALLKITTEN 228 (236)
T ss_dssp CCTTCEEEEEEESCBCCHHH-HH-H-S-TTCCGGGCBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEET
T ss_pred cCCCeEEEEEecCcccCcch-hh-c-C-CCccccccCCHHHHHHHHHHHHcCCCcccccccEEEEecCC
Confidence 3469999999998753211 10 0 0 01112345678999999987774433 248888887654
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-12 Score=103.78 Aligned_cols=173 Identities=10% Similarity=-0.014 Sum_probs=109.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhh-------------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCE
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAM-------------ESFGTYVESMAGDASNKKFLKTALR-------GVRS 68 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~-------------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~ 68 (208)
++|.||++++++|+++|++|++++|+.++.. ...+..+.++.+|++|++++.++++ ++|+
T Consensus 53 as~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iDi 132 (346)
T 3kvo_A 53 ASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKAIKKFGGIDI 132 (346)
T ss_dssp TTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 5889999999999999999999999876411 1124468899999999999988886 7899
Q ss_pred EEEcCCC----c----------------------h----hhhhhhcCCCeEEEeceeeeccC--CCCcccccchhHHH--
Q 028525 69 IICPSEG----F----------------------I----SNAGSLKGVQHVILLSQLSVYRG--SGGIQALMKGNARK-- 114 (208)
Q Consensus 69 vi~~~~~----~----------------------~----~~a~~~~gv~~~v~~Ss~~~~~~--~~~~~~~~~~~~~~-- 114 (208)
+|++++. . + ...+++.+..+||++||...+.. ..+...|...++-.
T Consensus 133 lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~~~~~~~~Y~aSKaal~~ 212 (346)
T 3kvo_A 133 LVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAYTIAKYGMSM 212 (346)
T ss_dssp EEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGGGTSSSHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCCCCCCchHHHHHHHHHHH
Confidence 9987321 0 0 11234556779999999876643 22333454432211
Q ss_pred hHHHHHHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC-CCcEEEEe
Q 028525 115 LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ-TGLIFEVV 186 (208)
Q Consensus 115 ~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~-~~~~~~i~ 186 (208)
+.+.....+. .++++..|.||.+.+.+... .+..........+.+|+|++++.++.+... .|+.+ +.
T Consensus 213 l~~~la~e~~-~gIrvn~v~PG~~i~T~~~~---~~~~~~~~~r~~~pedvA~~v~~L~s~~~~itG~~i-vd 280 (346)
T 3kvo_A 213 YVLGMAEEFK-GEIAVNALWPKTAIHTAAMD---MLGGPGIESQCRKVDIIADAAYSIFQKPKSFTGNFV-ID 280 (346)
T ss_dssp HHHHHHHHTT-TTCEEEEEECSBCBCCHHHH---HHCC--CGGGCBCTHHHHHHHHHHHTSCTTCCSCEE-EH
T ss_pred HHHHHHHHhc-CCcEEEEEeCCCccccHHHH---hhccccccccCCCHHHHHHHHHHHHhcCCCCCceEE-EC
Confidence 1111111122 68999999999644432111 011111123345779999999999987333 45655 44
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-12 Score=99.81 Aligned_cols=182 Identities=8% Similarity=-0.006 Sum_probs=112.9
Q ss_pred ccCc--cHHHHHHHHHhCCCcEEEEEcCchhh---hhh--cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 9 RKKM--NFRMVILSLIVKRTRIKALVKDKRNA---MES--FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 9 ~~G~--iG~~l~~~Ll~~g~~V~~~~R~~~~~---~~~--~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
++|. ||++++++|+++|++|++..|+.... .+. ...++.++.+|++|++++.++++ ++|++|++++
T Consensus 39 asg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG 118 (293)
T 3grk_A 39 VANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWGKLDFLVHAIG 118 (293)
T ss_dssp CCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred CCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 3666 99999999999999999999985421 111 11358899999999999988875 6799998732
Q ss_pred --------Cch----------------------hhhhhh--cCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 75 --------GFI----------------------SNAGSL--KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 75 --------~~~----------------------~~a~~~--~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
+.+ .+++.. ..-.+||++||...+.+......|..+++-. +.+..-
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la 198 (293)
T 3grk_A 119 FSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVMPNYNVMGVAKAALEASVKYLA 198 (293)
T ss_dssp CCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBCTTTTHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCCCchHHHHHHHHHHHHHHHHHH
Confidence 110 011111 1235899999988776444444555433211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCccc---e---eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCc
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQG---F---QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEE 190 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~~---~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~ 190 (208)
..+...++++..|+||++......... . .+..........+.+|+|++++.++.+.. ..|+.+++.+|-.
T Consensus 199 ~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 276 (293)
T 3grk_A 199 VDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLRRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADSGYH 276 (293)
T ss_dssp HHHGGGTEEEEEEEECCCCC------CCHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHhHhCCEEEEEecCCCcchhhhcccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCCcceEEEECCCcc
Confidence 223346899999999998643221100 0 00011122445678999999999887543 3588898886653
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=99.50 Aligned_cols=189 Identities=12% Similarity=0.016 Sum_probs=116.0
Q ss_pred cc--CccHHHHHHHHHhCCCcEEEEEcCchh---hhhh--cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 9 RK--KMNFRMVILSLIVKRTRIKALVKDKRN---AMES--FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 9 ~~--G~iG~~l~~~Ll~~g~~V~~~~R~~~~---~~~~--~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
++ |.||++++++|+++|++|++++|+... ..+. ....+.++.+|++|++++.++++ +.|++|++++
T Consensus 22 a~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg 101 (271)
T 3ek2_A 22 LLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWDSLDGLVHSIG 101 (271)
T ss_dssp CCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHCSCEEEEEECCC
T ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 46 899999999999999999999998543 1111 12358899999999999988886 5699998722
Q ss_pred --------Cch-----------------------hhhhhhc--CCCeEEEeceeeeccCCCCcccccchhHHH--hHHHH
Q 028525 75 --------GFI-----------------------SNAGSLK--GVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQD 119 (208)
Q Consensus 75 --------~~~-----------------------~~a~~~~--gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~ 119 (208)
+.. .+++... ...+||++||...+.+..+...|..+++-. +.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~l 181 (271)
T 3ek2_A 102 FAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIPNYNTMGLAKAALEASVRYL 181 (271)
T ss_dssp CCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTTTHHHHHHHHHHHHHHHH
T ss_pred cCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccCCCCccchhHHHHHHHHHHHHH
Confidence 110 0111111 124899999988776544444555433211 11111
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCccc---e---eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCc-
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGKQG---F---QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEE- 190 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~~~---~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~- 190 (208)
...+...+++++.|+||.+......... . .+........+.+.+|+|++++.++.++. ..|+.+++.+|..
T Consensus 182 a~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG~~~ 261 (271)
T 3ek2_A 182 AVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNA 261 (271)
T ss_dssp HHHHHTTTCEEEEEEECCC-----CCCHHHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSEEEEESTTGGG
T ss_pred HHHHHhcCcEEEEEecCcccchhhhcccchHHHHHHHHhcCCcCCCCCHHHHHHHHHHHcCcccCCeeeeEEEECCCeee
Confidence 1223456899999999998643322100 0 00011122445678999999999987543 3588999987664
Q ss_pred chhhHHH
Q 028525 191 KVSDWKK 197 (208)
Q Consensus 191 ~~~e~~~ 197 (208)
+..++.+
T Consensus 262 ~~~~~~~ 268 (271)
T 3ek2_A 262 VVGGMAG 268 (271)
T ss_dssp BCCCC--
T ss_pred ehhhhhh
Confidence 5555543
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.4e-12 Score=97.95 Aligned_cols=178 Identities=9% Similarity=-0.025 Sum_probs=112.7
Q ss_pred ccHHHHHHHHHhCCCcEEEEEcCchhh---hhh--cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-----
Q 028525 12 MNFRMVILSLIVKRTRIKALVKDKRNA---MES--FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE----- 74 (208)
Q Consensus 12 ~iG~~l~~~Ll~~g~~V~~~~R~~~~~---~~~--~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----- 74 (208)
.||++++++|+++|++|++++|+.+.. .+. ....+.++.+|++|++++.++++ ++|++|++++
T Consensus 43 GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~ 122 (296)
T 3k31_A 43 SLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGSLDFVVHAVAFSDKN 122 (296)
T ss_dssp SHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCCCHH
T ss_pred CHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCcc
Confidence 899999999999999999999986431 111 11247889999999999988885 5799998732
Q ss_pred ---Cch----------------------hhhhhh--cCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 75 ---GFI----------------------SNAGSL--KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 75 ---~~~----------------------~~a~~~--~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
..+ .+++.. ..-.+||++||...+.+......|..+++-. +.+.....+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~ 202 (296)
T 3k31_A 123 ELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKVVPHYNVMGVCKAALEASVKYLAVDLGK 202 (296)
T ss_dssp HHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCTTTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccCCCCchhhHHHHHHHHHHHHHHHHHHhh
Confidence 110 011111 1134899999988765444444555433211 11111122344
Q ss_pred cCCCEEEEeccccccCCCCccce------eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQGF------QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~~~------~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.++++..|+||++.......... .+........+...+|+|++++.++.+.. ..|+.+++.+|-
T Consensus 203 ~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~ 274 (296)
T 3k31_A 203 QQIRVNAISAGPVRTLASSGISDFHYILTWNKYNSPLRRNTTLDDVGGAALYLLSDLGRGTTGETVHVDCGY 274 (296)
T ss_dssp TTEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cCcEEEEEEECCCcCchhhcccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCccCCccCCEEEECCCc
Confidence 68999999999986533221100 00011122345678999999999987543 358899988665
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-12 Score=98.35 Aligned_cols=177 Identities=12% Similarity=0.053 Sum_probs=108.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------cCCceEEEEcCCCCHHHHHHHhc--------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------FGTYVESMAGDASNKKFLKTALR--------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~~~~v~~v~~Dl~d~~~l~~~~~--------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++++|+.++..+. .+.++.++.+|++|++++.++++ ..|++|+++
T Consensus 12 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~id~lvnnA 91 (260)
T 2qq5_A 12 GASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNA 91 (260)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCceEEEECC
Confidence 4689999999999999999999999987653221 13468899999999998877753 469999875
Q ss_pred C-C----------ch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--
Q 028525 74 E-G----------FI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK-- 114 (208)
Q Consensus 74 ~-~----------~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~-- 114 (208)
+ + .+ ...+.+.+..+||++||...+... +...|..+++-.
T Consensus 92 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-~~~~Y~asK~a~~~ 170 (260)
T 2qq5_A 92 YAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYM-FNVPYGVGKAACDK 170 (260)
T ss_dssp CTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSCC-SSHHHHHHHHHHHH
T ss_pred ccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCCC-CCCchHHHHHHHHH
Confidence 2 1 00 012334566799999998766432 233454432211
Q ss_pred hHHHHHHHHHhcCCCEEEEeccccccCCCCcc--ceeee-c---C---CcCCCcccHHHHHHHHHHHhhCCCC---CCcE
Q 028525 115 LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQ--GFQFE-E---G---CAANGSLSKEDAAFICVEALESIPQ---TGLI 182 (208)
Q Consensus 115 ~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~--~~~~~-~---~---~~~~~~v~~~Dva~~~~~~l~~~~~---~~~~ 182 (208)
+.+.....+...+++++.|+||++........ ..... . . .......+.+|+|++++.++.++.. .|+.
T Consensus 171 ~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~va~~v~~l~s~~~~~~itG~~ 250 (260)
T 2qq5_A 171 LAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSAETTELSGKCVVALATDPNILSLSGKV 250 (260)
T ss_dssp HHHHHHHHHGGGTCEEEEEECCCSCTTTC----------------------CHHHHHHHHHHHHHHHHTCTTGGGGTTCE
T ss_pred HHHHHHHHhccCCeEEEEEecCccccHHHHHhhccccccchhHHHHHHhhhccCCCHHHHHHHHHHHhcCccccccccee
Confidence 11111122334699999999999854322110 00000 0 0 0001123569999999999876542 3555
Q ss_pred EEE
Q 028525 183 FEV 185 (208)
Q Consensus 183 ~~i 185 (208)
+..
T Consensus 251 i~~ 253 (260)
T 2qq5_A 251 LPS 253 (260)
T ss_dssp EEH
T ss_pred ech
Confidence 543
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-12 Score=97.08 Aligned_cols=181 Identities=17% Similarity=0.062 Sum_probs=112.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEE-cCchhhhh------hcCCceEEEEcCCCCHHHHHHHhcC-------------CC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALV-KDKRNAME------SFGTYVESMAGDASNKKFLKTALRG-------------VR 67 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~-R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~~-------------~d 67 (208)
+++|.||++++++|+++|++|+++. |+.++..+ ..+..+.++.+|++|.+++.++++. +|
T Consensus 14 Gas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~id 93 (255)
T 3icc_A 14 GASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFD 93 (255)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHHHHHSSSCEE
T ss_pred CCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhcccccCCccc
Confidence 4689999999999999999999874 44443211 1244688899999999988877643 89
Q ss_pred EEEEcCC----Cch----------------------hhhhh-h-cCCCeEEEeceeeeccCCCCcccccchhHHH--hHH
Q 028525 68 SIICPSE----GFI----------------------SNAGS-L-KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAE 117 (208)
Q Consensus 68 ~vi~~~~----~~~----------------------~~a~~-~-~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~ 117 (208)
++|++++ +.. .+++. . .+..+||++||...+.+......|..+++-. +.+
T Consensus 94 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~ 173 (255)
T 3icc_A 94 ILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPDFIAYSMTKGAINTMTF 173 (255)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCCCCcchhHHhHHHHHHHHH
Confidence 9998732 110 01111 1 1234899999988776544445555533211 111
Q ss_pred HHHHHHHhcCCCEEEEeccccccCCCCcc---c--ee-eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 118 QDESMLMASGIPYTIIRTGVLQNTPGGKQ---G--FQ-FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 118 ~~e~~l~~~~~~~tivRp~~~~~~~~~~~---~--~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.....+...+++++.|+||++........ . .. ...........+.+|+|++++.++..+. ..|+.+++.+|
T Consensus 174 ~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG 252 (255)
T 3icc_A 174 TLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTISAFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGG 252 (255)
T ss_dssp HHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred HHHHHHHhcCeEEEEEEEeeecccchhhhcccHHHHHhhhccCCcCCCCCHHHHHHHHHHHhCcccCCccCCEEEecCC
Confidence 11122334689999999999865432110 0 00 0111122445678999999998886543 35888988765
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-12 Score=99.68 Aligned_cols=180 Identities=13% Similarity=0.013 Sum_probs=110.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCc-hhhh------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDK-RNAM------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~-~~~~------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
+++|.||++++++|+++|++|++..++. +... ...+.++.++.+|++|++++.++++ ++|++|+++
T Consensus 34 Gas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lvnnA 113 (267)
T 3u5t_A 34 GASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNA 113 (267)
T ss_dssp SCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 3589999999999999999999985543 3221 1124568899999999999988875 679999873
Q ss_pred C----Cch----------------------hhh-hhh-cCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHH---H
Q 028525 74 E----GFI----------------------SNA-GSL-KGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDES---M 122 (208)
Q Consensus 74 ~----~~~----------------------~~a-~~~-~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~---~ 122 (208)
+ +.+ ..+ +.. ..-.+||++||............|..+++-... .++. .
T Consensus 114 G~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~-l~~~la~e 192 (267)
T 3u5t_A 114 GIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLHPSYGIYAAAKAGVEA-MTHVLSKE 192 (267)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCCTTCHHHHHHHHHHHH-HHHHHHHH
T ss_pred CCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCCCCchHHHHHHHHHHH-HHHHHHHH
Confidence 2 110 011 111 112489999998766544444455543321110 1111 1
Q ss_pred HHhcCCCEEEEeccccccCCCCc---cce--eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGK---QGF--QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~---~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
+...++++..|+||++....... ... .+....+.....+.+|+|++++.++..... .|+.+++.+|
T Consensus 193 ~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 265 (267)
T 3u5t_A 193 LRGRDITVNAVAPGPTATDLFLEGKSDEVRDRFAKLAPLERLGTPQDIAGAVAFLAGPDGAWVNGQVLRANGG 265 (267)
T ss_dssp TTTSCCEEEEEEECCBC-----------CHHHHHTSSTTCSCBCHHHHHHHHHHHHSTTTTTCCSEEEEESSS
T ss_pred hhhhCCEEEEEEECCCcCccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 22368999999999985432111 000 011112224456789999999998875542 5788888755
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-12 Score=98.68 Aligned_cols=180 Identities=13% Similarity=0.073 Sum_probs=113.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
+++|.||++++++|+++|++|++++|+.++..+ ..+.++.++.+|++|++++.++++ +.|++|++++
T Consensus 12 Gas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~ 91 (281)
T 3zv4_A 12 GGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWD 91 (281)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEECCCCCCC
T ss_pred CCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCc
Confidence 468999999999999999999999999876432 234578999999999998888775 5799997722
Q ss_pred --Cch--------------------------h----hhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHH
Q 028525 75 --GFI--------------------------S----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESM 122 (208)
Q Consensus 75 --~~~--------------------------~----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 122 (208)
... . ..+.+.+ .++|++||...+.+......|..+++-... .++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaa~~~-l~~~l 169 (281)
T 3zv4_A 92 YSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR-GSVVFTISNAGFYPNGGGPLYTATKHAVVG-LVRQM 169 (281)
T ss_dssp TTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTSSSSSCHHHHHHHHHHHH-HHHHH
T ss_pred cccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CeEEEEecchhccCCCCCchhHHHHHHHHH-HHHHH
Confidence 110 0 0122233 589999998877654444556553321111 11111
Q ss_pred HHh--cCCCEEEEeccccccCCCCccce-----e---------eecCCcCCCcccHHHHHHHHHHHhhCCC---CCCcEE
Q 028525 123 LMA--SGIPYTIIRTGVLQNTPGGKQGF-----Q---------FEEGCAANGSLSKEDAAFICVEALESIP---QTGLIF 183 (208)
Q Consensus 123 l~~--~~~~~tivRp~~~~~~~~~~~~~-----~---------~~~~~~~~~~v~~~Dva~~~~~~l~~~~---~~~~~~ 183 (208)
-.+ ..+++..|+||++.......... . +..........+.+|+|.+++.++.++. ..|+.+
T Consensus 170 a~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~~~~itG~~i 249 (281)
T 3zv4_A 170 AFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPIGRMPALEEYTGAYVFFATRGDSLPATGALL 249 (281)
T ss_dssp HHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTCTTSSCCCGGGGSHHHHHHHSTTTSTTCSSCEE
T ss_pred HHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcCCCCCCCCHHHHHHHHHHhhcccccccccCcEE
Confidence 111 23999999999985432111000 0 0001112334567999999999987443 358889
Q ss_pred EEeeCC
Q 028525 184 EVVNGE 189 (208)
Q Consensus 184 ~i~~~~ 189 (208)
++.+|-
T Consensus 250 ~vdGG~ 255 (281)
T 3zv4_A 250 NYDGGM 255 (281)
T ss_dssp EESSSG
T ss_pred EECCCC
Confidence 887654
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=107.84 Aligned_cols=168 Identities=14% Similarity=0.081 Sum_probs=110.1
Q ss_pred cccCccHHHHHHHHHhCCC-cEEEEEcCchh------h-hhh--cCCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCC-
Q 028525 8 KRKKMNFRMVILSLIVKRT-RIKALVKDKRN------A-MES--FGTYVESMAGDASNKKFLKTALRG--VRSIICPSE- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~------~-~~~--~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~- 74 (208)
+++|.||++++++|+++|+ +|+++.|+... . .++ .+.++.++.+|++|.+++.++++. +|+|||+++
T Consensus 266 GgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld~VVh~AGv 345 (511)
T 2z5l_A 266 GGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPNAVFHTAGI 345 (511)
T ss_dssp TTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCSEEEECCCC
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCcEEEECCcc
Confidence 4699999999999999999 58888998642 1 111 234688999999999999999975 899998832
Q ss_pred ---Cc----------------------hhhhhhhc-CCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCC
Q 028525 75 ---GF----------------------ISNAGSLK-GVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGI 128 (208)
Q Consensus 75 ---~~----------------------~~~a~~~~-gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~ 128 (208)
+. +.+++... +.++||++||........+...|.. +|...+..-+.++..++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~~g~~~Yaa--aKa~ld~la~~~~~~gi 423 (511)
T 2z5l_A 346 LDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGNAGQGAYAA--ANAALDALAERRRAAGL 423 (511)
T ss_dssp CCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCCTTBHHHHH--HHHHHHHHHHHHHTTTC
T ss_pred cCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCCCCCHHHHH--HHHHHHHHHHHHHHcCC
Confidence 11 11223333 6789999999865433333445544 23322222234566899
Q ss_pred CEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 129 PYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
++++|+||.+.+..-................++.+|+++++..++..+.
T Consensus 424 ~v~sv~pG~~~~tgm~~~~~~~~~~~~g~~~l~~e~~a~~l~~al~~~~ 472 (511)
T 2z5l_A 424 PATSVAWGLWGGGGMAAGAGEESLSRRGLRAMDPDAAVDALLGAMGRND 472 (511)
T ss_dssp CCEEEEECCBCSTTCCCCHHHHHHHHHTBCCBCHHHHHHHHHHHHHHTC
T ss_pred cEEEEECCcccCCcccccccHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999987332111110000000123457899999999999998654
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-12 Score=96.70 Aligned_cols=180 Identities=13% Similarity=0.045 Sum_probs=107.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-----cCCceEEEEcCCCCHHHHHHH----hcCCCEEEEcCC---C
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-----FGTYVESMAGDASNKKFLKTA----LRGVRSIICPSE---G 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-----~~~~v~~v~~Dl~d~~~l~~~----~~~~d~vi~~~~---~ 75 (208)
+++|.||++++++|+++|++|++++|+.++.... .+..+..+ |..+.+.+.+. +.++|++|++++ .
T Consensus 8 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~--d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~ 85 (254)
T 1zmt_A 8 NVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPM--SEQEPAELIEAVTSAYGQVDVLVSNDIFAPE 85 (254)
T ss_dssp STTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEEC--CCCSHHHHHHHHHHHHSCCCEEEEECCCCCC
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEE--CHHHHHHHHHHHHHHhCCCCEEEECCCcCCC
Confidence 5789999999999999999999999987653221 12234433 65554443332 237899997722 1
Q ss_pred --ch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 76 --FI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 76 --~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
.+ ...+.+.+..+||++||...+.+..+...|..++.-. +.+.....+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~ 165 (254)
T 1zmt_A 86 FQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGE 165 (254)
T ss_dssp CCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCCCCchHHHHHHHHHHHHHHHHHHHhhh
Confidence 00 1123345677999999988765444444555433211 11111122334
Q ss_pred cCCCEEEEeccccccCCCCcc---ce---------eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQ---GF---------QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~---~~---------~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.+++++.|+||++++...... .+ .+........+.+.+|+|++++.++.++. ..|+.+++.+|.
T Consensus 166 ~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 243 (254)
T 1zmt_A 166 YNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGF 243 (254)
T ss_dssp GTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSSSCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTTC
T ss_pred cCcEEEEEecCccccccccccCCCcccccChHHHHHHhccCCCCCCcCHHHHHHHHHHHhCcccCCccCCEEEECCCc
Confidence 699999999999843211000 00 00000112345678999999999987654 257888887654
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-12 Score=98.45 Aligned_cols=183 Identities=15% Similarity=0.041 Sum_probs=109.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh---hh----h--hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN---AM----E--SFGTYVESMAGDASNKKFLKTALR-------GVRSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~---~~----~--~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~ 71 (208)
+++|.||++++++|+++|++|+++.|.... .. + ..+.++.++.+|++|++++.++++ ++|++|+
T Consensus 18 Gas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvn 97 (262)
T 3ksu_A 18 GGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAIN 97 (262)
T ss_dssp TCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 358899999999999999999999876432 11 1 123468899999999999998886 6799998
Q ss_pred cCC----Cch----------------------hhhh-hh-cCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 72 PSE----GFI----------------------SNAG-SL-KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 72 ~~~----~~~----------------------~~a~-~~-~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+++ +.+ .+++ .. .+..+||++||...+........|..+++-. +.+....
T Consensus 98 nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~ 177 (262)
T 3ksu_A 98 TVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAASK 177 (262)
T ss_dssp CCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHCCCCC-----CHHHHHHHHHHH
T ss_pred CCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCCCCCchhHHHHHHHHHHHHHHHH
Confidence 732 110 0111 11 1335899999987665433444565543211 1111111
Q ss_pred HHHhcCCCEEEEeccccccCCC----Cccce-eeecCCcCCCcccHHHHHHHHHHHhhCCC-CCCcEEEEeeCCc
Q 028525 122 MLMASGIPYTIIRTGVLQNTPG----GKQGF-QFEEGCAANGSLSKEDAAFICVEALESIP-QTGLIFEVVNGEE 190 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~----~~~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~i~~~~~ 190 (208)
.+...++++..|+||++..... ..... .+..........+.+|+|++++.++.+.. ..|+.+++.+|..
T Consensus 178 e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~~L~s~~~~itG~~i~vdGg~~ 252 (262)
T 3ksu_A 178 ELMKQQISVNAIAPGPMDTSFFYGQETKESTAFHKSQAMGNQLTKIEDIAPIIKFLTTDGWWINGQTIFANGGYT 252 (262)
T ss_dssp HTTTTTCEEEEEEECCCCTHHHHTCC------------CCCCSCCGGGTHHHHHHHHTTTTTCCSCEEEESTTCC
T ss_pred HHHHcCcEEEEEeeCCCcCccccccCchHHHHHHHhcCcccCCCCHHHHHHHHHHHcCCCCCccCCEEEECCCcc
Confidence 2233689999999998753210 00000 01111122345677999999999987632 2478888886654
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=98.93 Aligned_cols=174 Identities=8% Similarity=-0.029 Sum_probs=109.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh-------cCCceEEEEcCC--CCHHHHHHHhc-------CCCEEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES-------FGTYVESMAGDA--SNKKFLKTALR-------GVRSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~-------~~~~v~~v~~Dl--~d~~~l~~~~~-------~~d~vi~ 71 (208)
+++|.||++++++|+++|++|++++|+.++..+. ....+.++..|+ +|.+++.++++ ++|++|+
T Consensus 21 Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~g~id~lv~ 100 (247)
T 3i1j_A 21 GAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEFGRLDGLLH 100 (247)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHHHSCCSEEEE
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 3699999999999999999999999997763221 124577788887 88888877764 6899998
Q ss_pred cCC-----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHH
Q 028525 72 PSE-----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQ 118 (208)
Q Consensus 72 ~~~-----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~ 118 (208)
+++ ..+ ...+++.+..+||++||...+.+..+...|...++-. +.+.
T Consensus 101 nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~ 180 (247)
T 3i1j_A 101 NASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRANWGAYGVSKFATEGLMQT 180 (247)
T ss_dssp CCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCCCCCcchhHHHHHHHHHHHHH
Confidence 732 100 0113445667999999987765544445555433211 1111
Q ss_pred HHHHHHh-cCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEE
Q 028525 119 DESMLMA-SGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEV 185 (208)
Q Consensus 119 ~e~~l~~-~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i 185 (208)
....+.. .++++..|+||++..... .. . . .........+.+|+|++++.++.+.. ..|+.+++
T Consensus 181 la~e~~~~~~i~v~~v~PG~v~t~~~-~~-~-~-~~~~~~~~~~p~dva~~~~~l~s~~~~~itG~~i~~ 246 (247)
T 3i1j_A 181 LADELEGVTAVRANSINPGATRTGMR-AQ-A-Y-PDENPLNNPAPEDIMPVYLYLMGPDSTGINGQALNA 246 (247)
T ss_dssp HHHHHTTTSSEEEEEEECCCCSSHHH-HH-H-S-TTSCGGGSCCGGGGTHHHHHHHSGGGTTCCSCEEEC
T ss_pred HHHHhcCCCCeEEEEEecCcccCccc-hh-c-c-cccCccCCCCHHHHHHHHHHHhCchhccccCeeecC
Confidence 1111222 578999999998743211 00 0 0 11112334567999999999886543 24666553
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=5.3e-12 Score=99.78 Aligned_cols=171 Identities=13% Similarity=0.081 Sum_probs=106.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh---hh---------cCCceEEEEcCCCCHHHHHHHhcC-----CCEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM---ES---------FGTYVESMAGDASNKKFLKTALRG-----VRSII 70 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~---~~---------~~~~v~~v~~Dl~d~~~l~~~~~~-----~d~vi 70 (208)
+.+|.||++++++|+++|++|+++.|+..+.. .. .+.++.++.+|++|.+++.++++. +|++|
T Consensus 9 Gas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~g~iD~lV 88 (327)
T 1jtv_A 9 GCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEGRVDVLV 88 (327)
T ss_dssp CCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTSCCSEEE
T ss_pred CCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhcCCCCEEE
Confidence 56899999999999999999999887644311 11 124689999999999999999875 79999
Q ss_pred EcCC----Cch----------------------h----hhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHH
Q 028525 71 CPSE----GFI----------------------S----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQ 118 (208)
Q Consensus 71 ~~~~----~~~----------------------~----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~ 118 (208)
++++ +.+ . ..+++.+..+||++||...+........|..++.-. +.+.
T Consensus 89 nnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~~~~~~Y~aSK~a~~~~~~~ 168 (327)
T 1jtv_A 89 CNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCES 168 (327)
T ss_dssp ECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTTCHHHHHHHHHHHHHHHH
T ss_pred ECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCCCCChHHHHHHHHHHHHHHH
Confidence 8732 110 0 113456778999999988765433344455433211 1111
Q ss_pred HHHHHHhcCCCEEEEeccccccCCCCccce----eeecCCc---------------C-CC-cccHHHHHHHHHHHhhCCC
Q 028525 119 DESMLMASGIPYTIIRTGVLQNTPGGKQGF----QFEEGCA---------------A-NG-SLSKEDAAFICVEALESIP 177 (208)
Q Consensus 119 ~e~~l~~~~~~~tivRp~~~~~~~~~~~~~----~~~~~~~---------------~-~~-~v~~~Dva~~~~~~l~~~~ 177 (208)
....+...+++++.|+||.+.........- .+..... . .. .++.+|+|+.++.++..+.
T Consensus 169 la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~i~~l~~~~~ 248 (327)
T 1jtv_A 169 LAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTALRAPK 248 (327)
T ss_dssp HHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHCBCHHHHHHHHHHHHHCSS
T ss_pred HHHHhhhcCcEEEEEEeCcccChHHhhhhhcchhhhccCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHcCCC
Confidence 112233479999999999986433211000 0000000 0 01 2478999999999998654
Q ss_pred C
Q 028525 178 Q 178 (208)
Q Consensus 178 ~ 178 (208)
.
T Consensus 249 ~ 249 (327)
T 1jtv_A 249 P 249 (327)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=6.2e-12 Score=96.44 Aligned_cols=178 Identities=7% Similarity=-0.031 Sum_probs=112.4
Q ss_pred cc--CccHHHHHHHHHhCCCcEEEEEcCchhh-----h---hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEE
Q 028525 9 RK--KMNFRMVILSLIVKRTRIKALVKDKRNA-----M---ESFGTYVESMAGDASNKKFLKTALR-------GVRSIIC 71 (208)
Q Consensus 9 ~~--G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-----~---~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~ 71 (208)
++ |.||++++++|+++|++|+++.|+..+. . +..+.++.++.+|++|++++.++++ ..|++|+
T Consensus 28 as~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~ 107 (267)
T 3gdg_A 28 ASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVADFGQIDAFIA 107 (267)
T ss_dssp CCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 46 7999999999999999999999876432 1 1224578999999999999888875 5699998
Q ss_pred cCC----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCC--CCcccccchhHHHhHH-H
Q 028525 72 PSE----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGS--GGIQALMKGNARKLAE-Q 118 (208)
Q Consensus 72 ~~~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~--~~~~~~~~~~~~~~~~-~ 118 (208)
+++ .. ....+.+.+..+||++||...+... .+...|..++ ...+ .
T Consensus 108 nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~sK--~a~~~~ 185 (267)
T 3gdg_A 108 NAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSYNVAK--AGCIHM 185 (267)
T ss_dssp CCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCSSSCCHHHHHHH--HHHHHH
T ss_pred CCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccCCCCCCCcchHHH--HHHHHH
Confidence 732 10 0112345566799999998765432 2334454433 2111 1
Q ss_pred HHHHHHh--cCCCEEEEeccccccCCCCccc----eeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 119 DESMLMA--SGIPYTIIRTGVLQNTPGGKQG----FQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 119 ~e~~l~~--~~~~~tivRp~~~~~~~~~~~~----~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
++.+-++ ..+++..|.||++......... ..+....+.....+.+|+|++++.++.+.. ..|+.+++.+|
T Consensus 186 ~~~la~e~~~~i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~r~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG 263 (267)
T 3gdg_A 186 ARSLANEWRDFARVNSISPGYIDTGLSDFVPKETQQLWHSMIPMGRDGLAKELKGAYVYFASDASTYTTGADLLIDGG 263 (267)
T ss_dssp HHHHHHHTTTTCEEEEEEECCEECSCGGGSCHHHHHHHHTTSTTSSCEETHHHHHHHHHHHSTTCTTCCSCEEEESTT
T ss_pred HHHHHHHhccCcEEEEEECCccccchhhhCCHHHHHHHHhcCCCCCCcCHHHHHhHhheeecCccccccCCEEEECCc
Confidence 2111112 2388999999998543221100 001111222445567999999999887543 34788888754
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-12 Score=95.65 Aligned_cols=166 Identities=13% Similarity=0.052 Sum_probs=107.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc---CCCEEEEcCCC-----ch--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR---GVRSIICPSEG-----FI-- 77 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~---~~d~vi~~~~~-----~~-- 77 (208)
+++|.||++++++|+++|++|++++|+.+ +|++|++++.++++ ++|++|++++. ..
T Consensus 13 Gas~gIG~~~a~~l~~~G~~V~~~~r~~~--------------~D~~~~~~v~~~~~~~g~id~lv~nAg~~~~~~~~~~ 78 (223)
T 3uce_A 13 GGTSGIGAELAKQLESEHTIVHVASRQTG--------------LDISDEKSVYHYFETIGAFDHLIVTAGSYAPAGKVVD 78 (223)
T ss_dssp TTTSHHHHHHHHHHCSTTEEEEEESGGGT--------------CCTTCHHHHHHHHHHHCSEEEEEECCCCCCCCSCTTT
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEecCCcc--------------cCCCCHHHHHHHHHHhCCCCEEEECCCCCCCCCCccc
Confidence 46899999999999999999999998764 89999999998886 57999987221 00
Q ss_pred --------------------hhhhhhc--CCCeEEEeceeeeccCCCCcccccchhHHHhHH-HHHHHHHh-cCCCEEEE
Q 028525 78 --------------------SNAGSLK--GVQHVILLSQLSVYRGSGGIQALMKGNARKLAE-QDESMLMA-SGIPYTII 133 (208)
Q Consensus 78 --------------------~~a~~~~--gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~-~~e~~l~~-~~~~~tiv 133 (208)
.+++... .-.+||++||...+.+..+...|...+ ...+ .++.+-++ ..+++..|
T Consensus 79 ~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~asK--~a~~~~~~~la~e~~~i~vn~v 156 (223)
T 3uce_A 79 VEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVVANTYVKAAIN--AAIEATTKVLAKELAPIRVNAI 156 (223)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCCTTCHHHHHHH--HHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCCCCchHHHHHH--HHHHHHHHHHHHhhcCcEEEEE
Confidence 0111111 124899999988776544445555433 2111 12222122 23999999
Q ss_pred eccccccCCCCccc--e------eeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC
Q 028525 134 RTGVLQNTPGGKQG--F------QFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE 189 (208)
Q Consensus 134 Rp~~~~~~~~~~~~--~------~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~ 189 (208)
+||++......... . .+....+...+.+.+|+|++++.+++.+...|+.+++.+|.
T Consensus 157 ~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~tG~~i~vdgG~ 220 (223)
T 3uce_A 157 SPGLTKTEAYKGMNADDRDAMYQRTQSHLPVGKVGEASDIAMAYLFAIQNSYMTGTVIDVDGGA 220 (223)
T ss_dssp EECSBCSGGGTTSCHHHHHHHHHHHHHHSTTCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTTG
T ss_pred EeCCCcchhhhhcchhhHHHHHHHHhhcCCCCCccCHHHHHHHHHHHccCCCCCCcEEEecCCe
Confidence 99998643211100 0 00111223455678999999999998655678999987653
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-11 Score=93.27 Aligned_cols=181 Identities=13% Similarity=0.061 Sum_probs=117.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
++++-||+++++.|+++|++|.+.+|+.++..+ ..+.++..+.+|++|++++.++++ +.|++|++++
T Consensus 14 Gas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 14 GAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 357789999999999999999999999876321 124568899999999999888763 5699997632
Q ss_pred -----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHH
Q 028525 75 -----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDES 121 (208)
Q Consensus 75 -----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~ 121 (208)
..+ ...+.+++-.+||++||.....+......|...++- .+.+..-.
T Consensus 94 i~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~~~~~~Y~asKaal~~ltr~lA~ 173 (254)
T 4fn4_A 94 IMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAA 173 (254)
T ss_dssp CCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 111 123555666799999999876554444556554321 11222223
Q ss_pred HHHhcCCCEEEEeccccccCCCCccc----ee---eec-CCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQG----FQ---FEE-GCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~~----~~---~~~-~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
.+...++++..|.||++..+...... .. +.. .......-..+|||.+++.++.+... .|+.+.+.+|
T Consensus 174 ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~R~g~pediA~~v~fLaSd~a~~iTG~~i~VDGG 250 (254)
T 4fn4_A 174 HYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRLAEPEDIANVIVFLASDEASFVNGDAVVVDGG 250 (254)
T ss_dssp HHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHTTCCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEeCCC
Confidence 34567999999999998543211100 00 000 00112234579999999998865442 4788877643
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.5e-11 Score=91.24 Aligned_cols=181 Identities=10% Similarity=0.042 Sum_probs=115.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh-----hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM-----ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~-----~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~- 74 (208)
++++-||+++++.|++.|++|.+..|+.++.. ...+.++..+.+|++|++++.++++ ..|++|++++
T Consensus 14 Gas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iDiLVNnAGi 93 (258)
T 4gkb_A 14 GGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRLDGLVNNAGV 93 (258)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 35778999999999999999999999876421 1234578999999999988877763 5799997732
Q ss_pred --Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHH
Q 028525 75 --GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLM 124 (208)
Q Consensus 75 --~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~ 124 (208)
.. ....+++.+ .+||++||.....+......|..+++-. +.+..-..+.
T Consensus 94 ~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G~IVnisS~~~~~~~~~~~~Y~asKaav~~ltr~lA~ela 172 (258)
T 4gkb_A 94 NDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATR-GAIVNISSKTAVTGQGNTSGYCASKGAQLALTREWAVALR 172 (258)
T ss_dssp CCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTHHHHCCSSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEeehhhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 11 011233333 5899999988765544455565543211 1122223345
Q ss_pred hcCCCEEEEeccccccCCCCccceee----------ecCCcC-CCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeCC
Q 028525 125 ASGIPYTIIRTGVLQNTPGGKQGFQF----------EEGCAA-NGSLSKEDAAFICVEALESIPQ--TGLIFEVVNGE 189 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~~~~~~----------~~~~~~-~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~~ 189 (208)
..|+++..|.||.+............ ....+. ..+-..+|||.+++.++.+... .|+.+.+.+|-
T Consensus 173 ~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plg~R~g~peeiA~~v~fLaS~~a~~iTG~~i~VDGG~ 250 (258)
T 4gkb_A 173 EHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPLGRRFTTPDEIADTAVFLLSPRASHTTGEWLFVDGGY 250 (258)
T ss_dssp GGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred ccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCchhcCccCCeEEECCCc
Confidence 68999999999998543221100000 000111 2344679999999988865442 57888887553
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-11 Score=94.65 Aligned_cols=178 Identities=7% Similarity=-0.010 Sum_probs=107.4
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhh-h---hhcCCceEEEEcCCCCHHHHHHHhc----------CCCEEEEcCC-
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNA-M---ESFGTYVESMAGDASNKKFLKTALR----------GVRSIICPSE- 74 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-~---~~~~~~v~~v~~Dl~d~~~l~~~~~----------~~d~vi~~~~- 74 (208)
+|.||++++++|+++|++|++++|+.++. . +..+.++.++.+|++|++++.++++ ++|++|++++
T Consensus 18 s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~~~~iD~lv~nAg~ 97 (269)
T 2h7i_A 18 DSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGF 97 (269)
T ss_dssp TTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCTTCCEEEEEECCCC
T ss_pred CCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCCCCCceEEEECCcc
Confidence 78999999999999999999999987552 2 2223468899999999999988876 7899998721
Q ss_pred --------Cch----------------------hhhhh-h-cCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 75 --------GFI----------------------SNAGS-L-KGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 75 --------~~~----------------------~~a~~-~-~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
..+ .+++. . ..-.+||++||...+. ......|..+++-. +.+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~-~~~~~~Y~asKaa~~~l~~~la 176 (269)
T 2h7i_A 98 MPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA-MPAYNWMTVAKSALESVNRFVA 176 (269)
T ss_dssp CCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC-CTTTHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc-cCchHHHHHHHHHHHHHHHHHH
Confidence 110 01111 1 0114899999876532 12222333322111 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCC-------ccce---------eeecCCcCC-CcccHHHHHHHHHHHhhCCCC--CCc
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGG-------KQGF---------QFEEGCAAN-GSLSKEDAAFICVEALESIPQ--TGL 181 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~-------~~~~---------~~~~~~~~~-~~v~~~Dva~~~~~~l~~~~~--~~~ 181 (208)
..+...+++++.|+||++...... .... .+....+.. .....+|+|++++.++.+... .|+
T Consensus 177 ~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~rr~~~p~dvA~~v~~L~s~~~~~itG~ 256 (269)
T 2h7i_A 177 REAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGD 256 (269)
T ss_dssp HHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCHHHHHHHHHHHSSSCTTCCSE
T ss_pred HHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHHhhhccCCcccCCCCHHHHHHHHHHHhCchhccCcce
Confidence 223446999999999987432100 0000 000001112 245679999999999875432 467
Q ss_pred EEEEeeC
Q 028525 182 IFEVVNG 188 (208)
Q Consensus 182 ~~~i~~~ 188 (208)
.+.+.+|
T Consensus 257 ~i~vdGG 263 (269)
T 2h7i_A 257 IIYADGG 263 (269)
T ss_dssp EEEESTT
T ss_pred EEEecCC
Confidence 7777654
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=100.82 Aligned_cols=182 Identities=13% Similarity=0.056 Sum_probs=112.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh--hhhhc-CCceEEEEcCCCCHHHHHHHhc-------C-CCEEEEcCC--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN--AMESF-GTYVESMAGDASNKKFLKTALR-------G-VRSIICPSE-- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~--~~~~~-~~~v~~v~~Dl~d~~~l~~~~~-------~-~d~vi~~~~-- 74 (208)
+++|.||++++++|+++|++|+++.|+... ..+.. ..++.++.+|++|.+++.++++ + +|+||++++
T Consensus 220 GgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id~lV~nAGv~ 299 (454)
T 3u0b_A 220 GAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGIT 299 (454)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCSEEEECCCCC
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCceEEEECCccc
Confidence 358999999999999999999999987533 11111 1246889999999998888774 3 899998732
Q ss_pred --Cch----------------------hhhh----hhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHH
Q 028525 75 --GFI----------------------SNAG----SLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLM 124 (208)
Q Consensus 75 --~~~----------------------~~a~----~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~ 124 (208)
+.+ .+++ ...+..+||++||............|...++-. +.+..-..+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~~g~~~YaasKaal~~l~~~la~e~~ 379 (454)
T 3u0b_A 300 RDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTNYATTKAGMIGLAEALAPVLA 379 (454)
T ss_dssp CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 110 1111 222566999999987665444445565533211 1211223344
Q ss_pred hcCCCEEEEeccccccCCCCccceee----ecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 125 ASGIPYTIIRTGVLQNTPGGKQGFQF----EEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~~~~~~----~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
..+++++.|+||++............ ............+|+|++++.++.... ..|+++++.+|.
T Consensus 380 ~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~l~r~g~pedvA~~v~fL~s~~a~~itG~~i~vdGG~ 450 (454)
T 3u0b_A 380 DKGITINAVAPGFIETKMTEAIPLATREVGRRLNSLFQGGQPVDVAELIAYFASPASNAVTGNTIRVCGQA 450 (454)
T ss_dssp TTTCEEEEEEECSBCC----------CHHHHHSBTTSSCBCHHHHHHHHHHHHCGGGTTCCSCEEEESSSB
T ss_pred hcCcEEEEEEcCcccChhhhhcchhhHHHHHhhccccCCCCHHHHHHHHHHHhCCccCCCCCcEEEECCcc
Confidence 57999999999998543221100000 000111223467999999998886543 357888887553
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.5e-11 Score=91.17 Aligned_cols=179 Identities=11% Similarity=0.020 Sum_probs=106.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEE-E--cCchhhhhhcC--CceEEEEcCCCCHHHHHHHh----cCCCEEEEcCC----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKAL-V--KDKRNAMESFG--TYVESMAGDASNKKFLKTAL----RGVRSIICPSE---- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~-~--R~~~~~~~~~~--~~v~~v~~Dl~d~~~l~~~~----~~~d~vi~~~~---- 74 (208)
+++|.||++++++|+++|++|+++ . |+.++..+... .+.++. |..+.+.+.+.+ .++|++|++++
T Consensus 8 Gas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~ 85 (244)
T 1zmo_A 8 HARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTIAL--AEQKPERLVDATLQHGEAIDTIVSNDYIPRP 85 (244)
T ss_dssp STTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHSTTEEEC--CCCCGGGHHHHHGGGSSCEEEEEECCCCCTT
T ss_pred CCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHhCCCccc--CHHHHHHHHHHHHHHcCCCCEEEECCCcCCC
Confidence 579999999999999999999999 6 98766432110 233332 555544433332 25799998721
Q ss_pred ---Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHH
Q 028525 75 ---GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESML 123 (208)
Q Consensus 75 ---~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l 123 (208)
+.+ ...+.+.+..+||++||...+.+..+...|..+++-. +.+.....+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~ 165 (244)
T 1zmo_A 86 MNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTL 165 (244)
T ss_dssp GGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 110 0123345678999999988776444445555533211 111111223
Q ss_pred HhcCCCEEEEeccccccCCC---Ccc---ce--eeec-CCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 124 MASGIPYTIIRTGVLQNTPG---GKQ---GF--QFEE-GCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~---~~~---~~--~~~~-~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
...+++++.|+||++..... ... .. .+.. ........+.+|+|++++.++.++.. .|+.+.+.+|
T Consensus 166 ~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pe~vA~~v~~l~s~~~~~~tG~~i~vdgG 241 (244)
T 1zmo_A 166 SRDGILLYAIGPNFFNNPTYFPTSDWENNPELRERVDRDVPLGRLGRPDEMGALITFLASRRAAPIVGQFFAFTGG 241 (244)
T ss_dssp GGGTEEEEEEEESSBCBTTTBCHHHHHHCHHHHHHHHHHCTTCSCBCHHHHHHHHHHHHTTTTGGGTTCEEEESTT
T ss_pred hhcCcEEEEEeeCCCcCCcccccccccchHHHHHHHhcCCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEeCCC
Confidence 34689999999998854332 110 00 0000 11123456789999999999876542 4788887755
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-10 Score=88.72 Aligned_cols=177 Identities=10% Similarity=0.011 Sum_probs=109.4
Q ss_pred ccHHHHHHHHHhCCCcEEEEEcCchhhh-------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC--
Q 028525 12 MNFRMVILSLIVKRTRIKALVKDKRNAM-------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG-- 75 (208)
Q Consensus 12 ~iG~~l~~~Ll~~g~~V~~~~R~~~~~~-------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~-- 75 (208)
-||+++++.|+++|++|.+..|+.+... +..+.++.++.+|++|++++.++++ +.|++|++++.
T Consensus 19 GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD~lvnnAg~~~ 98 (256)
T 4fs3_A 19 SIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFAN 98 (256)
T ss_dssp CHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCCCC
T ss_pred hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEecccccc
Confidence 6999999999999999999999876521 1123468899999999998887764 57999976220
Q ss_pred ------chh----------------------hhh-h-hcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHHH
Q 028525 76 ------FIS----------------------NAG-S-LKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESML 123 (208)
Q Consensus 76 ------~~~----------------------~a~-~-~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~l 123 (208)
... .++ . ...-.+||++||.....+......|..+++- .+.+..-..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaal~~ltr~lA~El 178 (256)
T 4fs3_A 99 MEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLALDL 178 (256)
T ss_dssp GGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 000 001 0 1122489999998876544444555553321 1111122334
Q ss_pred HhcCCCEEEEeccccccCCCCcc----ce--eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQ----GF--QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~----~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
...|+++..|.||++........ .. .+....+.......+|||.+++.++.+... .|+++.+.+|
T Consensus 179 a~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R~g~peevA~~v~fL~Sd~a~~iTG~~i~VDGG 251 (256)
T 4fs3_A 179 GPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSG 251 (256)
T ss_dssp GGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCCEEEECcC
Confidence 45799999999998753221110 00 000011123344679999999998865432 4788877644
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=93.41 Aligned_cols=180 Identities=12% Similarity=0.019 Sum_probs=115.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE- 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~- 74 (208)
+++-||+++++.|+++|++|.+.+|+.++..+ ..+.++..+.+|++|++++.++++ +.|++|++++
T Consensus 17 as~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNAG~ 96 (255)
T 4g81_D 17 SARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNAGI 96 (255)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEECCCC
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECCCC
Confidence 57889999999999999999999998765321 124468889999999999888763 4699997732
Q ss_pred ---Cch--------------------------hhhhh-hcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHHH
Q 028525 75 ---GFI--------------------------SNAGS-LKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDESM 122 (208)
Q Consensus 75 ---~~~--------------------------~~a~~-~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~~ 122 (208)
+.+ ...+. +.+-.+||++||.....+......|..+++ ..+.+..-..
T Consensus 97 ~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaal~~ltr~lA~e 176 (255)
T 4g81_D 97 QYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAE 176 (255)
T ss_dssp CCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 110 11232 335569999999987665444555655432 1111222233
Q ss_pred HHhcCCCEEEEeccccccCCCCc----cce-e-eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGK----QGF-Q-FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~----~~~-~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+...++++..|.||++..+.... ... . +....+...+-..+|+|.+++.++.+.. -.|+.+.+.+|
T Consensus 177 la~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R~g~pediA~~v~fL~S~~a~~iTG~~i~VDGG 250 (255)
T 4g81_D 177 WAQFNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPSQRWGRPEELIGTAIFLSSKASDYINGQIIYVDGG 250 (255)
T ss_dssp HGGGTEEEEEEEECSBCCGGGHHHHTCHHHHHHHHHHSTTCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hcccCeEEEEEeeCCCCCchhhcccCCHHHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhCCCcCCEEEECCC
Confidence 44679999999999985322110 000 0 0001112233456999999998886543 24788888755
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-11 Score=92.20 Aligned_cols=178 Identities=13% Similarity=0.038 Sum_probs=112.0
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhh---hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC---
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAM---ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG--- 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~---~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~--- 75 (208)
+++-||+++++.|++.|++|.+..|+.+++. +..+.++..+.+|++|++++.++++ +.|++|++++.
T Consensus 37 as~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNAG~~~~ 116 (273)
T 4fgs_A 37 ATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSM 116 (273)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEEEEECCCCCCC
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 4778999999999999999999999987642 2345678899999999999888764 45999976321
Q ss_pred -ch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhc
Q 028525 76 -FI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMAS 126 (208)
Q Consensus 76 -~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~ 126 (208)
.+ ...+++. .++|++||.....+......|...++-. +.+..-..+...
T Consensus 117 ~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~--G~IInisS~~~~~~~~~~~~Y~asKaav~~ltr~lA~Ela~~ 194 (273)
T 4fgs_A 117 LPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARG--SSVVLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDLKDR 194 (273)
T ss_dssp CCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE--EEEEEECCGGGGSCCTTCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhC--CeEEEEeehhhccCCCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 10 1113333 3799999987765444445565543211 111111223357
Q ss_pred CCCEEEEeccccccCCCCcc----cee-------eecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 127 GIPYTIIRTGVLQNTPGGKQ----GFQ-------FEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~~~~~----~~~-------~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
|+++..|.||.+........ ... +....+....-..+|||.+++.++.+... .|+.+.+.+|
T Consensus 195 gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peeiA~~v~FLaSd~a~~iTG~~i~VDGG 269 (273)
T 4fgs_A 195 GIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMGRVGRAEEVAAAALFLASDDSSFVTGAELFVDGG 269 (273)
T ss_dssp CEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCCeEeECcC
Confidence 89999999998743221110 000 00001112334569999999998865442 4788887654
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-10 Score=89.41 Aligned_cols=65 Identities=9% Similarity=-0.072 Sum_probs=52.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----h---cCCceEEEEcCCCCH-HHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----S---FGTYVESMAGDASNK-KFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~---~~~~v~~v~~Dl~d~-~~l~~~~~-------~~d~vi~~ 72 (208)
+++|.||++++++|+++|++|++++|+.++..+ + .+.++.++.+|++|+ +++.++++ ++|++|++
T Consensus 19 Gas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~g~iD~lv~n 98 (311)
T 3o26_A 19 GGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNN 98 (311)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEC
T ss_pred cCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 358999999999999999999999999875321 1 124689999999998 77766654 78999987
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.7e-11 Score=89.06 Aligned_cols=181 Identities=14% Similarity=0.117 Sum_probs=115.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-h---hhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCC----Cch
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-A---MESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSE----GFI 77 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~---~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~----~~~ 77 (208)
++++-||+++++.|++.|++|.+.+|+..+ . ....+.++..+.+|++|++++.++++ +.|++|++++ ..+
T Consensus 16 Gas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVNNAGi~~~~~~ 95 (247)
T 4hp8_A 16 GANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILVNNAGIIRRADS 95 (247)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEECCCCCCCCCG
T ss_pred CcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEECCCCCCCCCc
Confidence 357889999999999999999999998643 1 12234578899999999998888775 4799997732 110
Q ss_pred --------------------------hhhhhhcC-CCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHHHHHhcCC
Q 028525 78 --------------------------SNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDESMLMASGI 128 (208)
Q Consensus 78 --------------------------~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~~l~~~~~ 128 (208)
...+.+.+ -.+||.+||............|..+++ ..+.+..-..+...++
T Consensus 96 ~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~~~~~Y~asKaav~~ltr~lA~Ela~~gI 175 (247)
T 4hp8_A 96 VEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGIRVPSYTAAKHGVAGLTKLLANEWAAKGI 175 (247)
T ss_dssp GGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCSSCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred ccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCe
Confidence 11233344 469999999887654444455655442 1111212233446799
Q ss_pred CEEEEeccccccCCCCc----cc--eeeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 129 PYTIIRTGVLQNTPGGK----QG--FQFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~~----~~--~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
++..|.||++..+.... .. ..+....+....-..+|||.+++.++.+... .|+.+.+.+|
T Consensus 176 rVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~PlgR~g~peeiA~~v~fLaSd~a~~iTG~~i~VDGG 243 (247)
T 4hp8_A 176 NVNAIAPGYIETNNTEALRADAARNKAILERIPAGRWGHSEDIAGAAVFLSSAAADYVHGAILNVDGG 243 (247)
T ss_dssp EEEEEEECSBCSGGGHHHHTSHHHHHHHHTTCTTSSCBCTHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred EEEEEeeCCCCCcchhhcccCHHHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECcc
Confidence 99999999985322110 00 0011111122333569999999988865442 4788877644
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.5e-11 Score=94.79 Aligned_cols=174 Identities=11% Similarity=-0.041 Sum_probs=103.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEc---------Cchhhhh----hcCCceEEEEcCCCCHHHHHHHh-------cCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVK---------DKRNAME----SFGTYVESMAGDASNKKFLKTAL-------RGVR 67 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R---------~~~~~~~----~~~~~v~~v~~Dl~d~~~l~~~~-------~~~d 67 (208)
+++|.||++++++|+++|++|++.+| +.++..+ ....+ ..+.+|+.|.+++.+++ .++|
T Consensus 16 Gas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD 94 (319)
T 1gz6_A 16 GAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG-GKAVANYDSVEAGEKLVKTALDTFGRID 94 (319)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT-CEEEEECCCGGGHHHHHHHHHHHTSCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhC-CeEEEeCCCHHHHHHHHHHHHHHcCCCC
Confidence 35899999999999999999999754 4443211 11111 12357999988766654 3689
Q ss_pred EEEEcCC----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--h
Q 028525 68 SIICPSE----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--L 115 (208)
Q Consensus 68 ~vi~~~~----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~ 115 (208)
++|++++ ..+ ...+++.+..+||++||........+...|..++.-. +
T Consensus 95 ~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~~~~~~Y~aSK~a~~~~ 174 (319)
T 1gz6_A 95 VVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLLGL 174 (319)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCCCCHHHHHHHHHHHHH
Confidence 9998732 110 1123456678999999976543333344454433211 1
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC-CCcEEEEeeC
Q 028525 116 AEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ-TGLIFEVVNG 188 (208)
Q Consensus 116 ~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~-~~~~~~i~~~ 188 (208)
.+.....+...+++++.|+||.+ ... ... . . +.......+.+|+|..++.++..+.. .|+.|++.+|
T Consensus 175 ~~~la~el~~~gI~vn~v~PG~~-t~~-~~~-~-~--~~~~~~~~~p~dvA~~~~~l~s~~~~~tG~~~~v~GG 242 (319)
T 1gz6_A 175 ANTLVIEGRKNNIHCNTIAPNAG-SRM-TET-V-M--PEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAG 242 (319)
T ss_dssp HHHHHHHTGGGTEEEEEEEEECC-STT-TGG-G-S--CHHHHHHSCGGGTHHHHHHHTSTTCCCCSCEEEEETT
T ss_pred HHHHHHHhcccCEEEEEEeCCCc-ccc-ccc-c-C--ChhhhccCCHHHHHHHHHHHhCchhhcCCCEEEECCC
Confidence 11111122346899999999986 221 111 1 0 01112245779999999998876543 4777776543
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=88.83 Aligned_cols=175 Identities=11% Similarity=0.031 Sum_probs=106.4
Q ss_pred cccCccHHHHHHHHHh---CCCcEEEEEcCchhhhhh---c-----CCceEEEEcCCCCHHHHHHHhc---------CCC
Q 028525 8 KRKKMNFRMVILSLIV---KRTRIKALVKDKRNAMES---F-----GTYVESMAGDASNKKFLKTALR---------GVR 67 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~---~g~~V~~~~R~~~~~~~~---~-----~~~v~~v~~Dl~d~~~l~~~~~---------~~d 67 (208)
+++|.||++++++|++ +|++|++++|+.++..+. . +.++.++.+|++|++++.++++ ..|
T Consensus 13 Gas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~g~~d 92 (259)
T 1oaa_A 13 GASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQ 92 (259)
T ss_dssp SCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHHSCCCTTCC
T ss_pred CCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhccccccCC
Confidence 4689999999999999 899999999987653221 1 3468899999999998887763 357
Q ss_pred --EEEEcCC------Cchh-----------------------hh----hhhc--CCCeEEEeceeeeccCCCCcccccch
Q 028525 68 --SIICPSE------GFIS-----------------------NA----GSLK--GVQHVILLSQLSVYRGSGGIQALMKG 110 (208)
Q Consensus 68 --~vi~~~~------~~~~-----------------------~a----~~~~--gv~~~v~~Ss~~~~~~~~~~~~~~~~ 110 (208)
++|++++ ..+. ++ +.+. +..+||++||...+.+..+...|..+
T Consensus 93 ~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as 172 (259)
T 1oaa_A 93 RLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAG 172 (259)
T ss_dssp EEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred ccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcCCCCCccHHHHH
Confidence 8887721 1000 01 1222 34689999999877654444455543
Q ss_pred hHHHhHHH-HHHHHHh-cCCCEEEEeccccccCCCCc-------cce--eeecCCcCCCcccHHHHHHHHHHHhhCCCC-
Q 028525 111 NARKLAEQ-DESMLMA-SGIPYTIIRTGVLQNTPGGK-------QGF--QFEEGCAANGSLSKEDAAFICVEALESIPQ- 178 (208)
Q Consensus 111 ~~~~~~~~-~e~~l~~-~~~~~tivRp~~~~~~~~~~-------~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~- 178 (208)
++ ..+. ++.+-.+ .+++++.|+||++....... ... .+....+...+.+.+|+|++++.++.+...
T Consensus 173 Ka--a~~~~~~~la~e~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~~~~~~i 250 (259)
T 1oaa_A 173 KA--ARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQKDTFQ 250 (259)
T ss_dssp HH--HHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHHHTTCSBCHHHHHHHHHHHHHHCCSC
T ss_pred HH--HHHHHHHHHHhhCCCceEEEecCCCcCcchHHHHhhccCChhHHHHHHHhhhcCCcCCHHHHHHHHHHHHhhcccc
Confidence 32 1111 1111112 35889999999874321100 000 000000123456789999999998875333
Q ss_pred CCcEEE
Q 028525 179 TGLIFE 184 (208)
Q Consensus 179 ~~~~~~ 184 (208)
.|+.++
T Consensus 251 tG~~i~ 256 (259)
T 1oaa_A 251 SGAHVD 256 (259)
T ss_dssp TTEEEE
T ss_pred CCcEEe
Confidence 344444
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-10 Score=87.80 Aligned_cols=178 Identities=11% Similarity=0.058 Sum_probs=111.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC------C
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE------G 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~------~ 75 (208)
+++-||+++++.|+++|++|.+..|+..+.. .....+.+|++|++++.++++ +.|++|++++ +
T Consensus 19 as~GIG~aia~~la~~Ga~V~~~~r~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~ 94 (261)
T 4h15_A 19 GTKGAGAATVSLFLELGAQVLTTARARPEGL----PEELFVEADLTTKEGCAIVAEATRQRLGGVDVIVHMLGGSSAAGG 94 (261)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEEESSCCTTS----CTTTEEECCTTSHHHHHHHHHHHHHHTSSCSEEEECCCCCCCCSS
T ss_pred cCcHHHHHHHHHHHHcCCEEEEEECCchhCC----CcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCccCCC
Confidence 4778999999999999999999999865422 223568899999998887764 4699997622 1
Q ss_pred ch--------------------------hhhhhhcCCCeEEEeceeeeccCC-CCcccccchhH--HHhHHHHHHHHHhc
Q 028525 76 FI--------------------------SNAGSLKGVQHVILLSQLSVYRGS-GGIQALMKGNA--RKLAEQDESMLMAS 126 (208)
Q Consensus 76 ~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~-~~~~~~~~~~~--~~~~~~~e~~l~~~ 126 (208)
.+ ...+.+.+-.++|++||.....+. .....|..+++ ..+.+..-..+...
T Consensus 95 ~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~~~~~~~Y~asKaal~~lt~~lA~Ela~~ 174 (261)
T 4h15_A 95 GFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPLPESTTAYAAAKAALSTYSKAMSKEVSPK 174 (261)
T ss_dssp CGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTTCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCCCCccHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 10 112455666799999998765432 22334444332 11112222334457
Q ss_pred CCCEEEEeccccccCCCC----------ccc------ee--eecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEe
Q 028525 127 GIPYTIIRTGVLQNTPGG----------KQG------FQ--FEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVV 186 (208)
Q Consensus 127 ~~~~tivRp~~~~~~~~~----------~~~------~~--~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~ 186 (208)
|+++..|.||++...... ... .. .....+...+-..+|||.+++.++.+... .|+.+.+.
T Consensus 175 gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peevA~~v~fLaS~~a~~itG~~i~VD 254 (261)
T 4h15_A 175 GVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGGIPLGRPAKPEEVANLIAFLASDRAASITGAEYTID 254 (261)
T ss_dssp TEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred CeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCchhcCccCcEEEEC
Confidence 999999999988432100 000 00 00011123344679999999988865432 47888887
Q ss_pred eCCc
Q 028525 187 NGEE 190 (208)
Q Consensus 187 ~~~~ 190 (208)
+|-.
T Consensus 255 GG~v 258 (261)
T 4h15_A 255 GGTV 258 (261)
T ss_dssp TTCS
T ss_pred CcCc
Confidence 6643
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=6.5e-10 Score=92.24 Aligned_cols=168 Identities=14% Similarity=0.071 Sum_probs=108.5
Q ss_pred cccCccHHHHHHHHHhCCC-cEEEEEcCchh---h------hhhcCCceEEEEcCCCCHHHHHHHhcC------CCEEEE
Q 028525 8 KRKKMNFRMVILSLIVKRT-RIKALVKDKRN---A------MESFGTYVESMAGDASNKKFLKTALRG------VRSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~---~------~~~~~~~v~~v~~Dl~d~~~l~~~~~~------~d~vi~ 71 (208)
+++|.||++++++|+++|+ +|+++.|+... . .+..+.++.++.+|++|.+++.++++. +|+||+
T Consensus 246 GgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g~ld~vVh 325 (496)
T 3mje_A 246 GGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDAPLTAVFH 325 (496)
T ss_dssp TCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTSCEEEEEE
T ss_pred CCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 4699999999999999998 67788886432 1 111245789999999999999999863 589998
Q ss_pred cCC---C--c----------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHH
Q 028525 72 PSE---G--F----------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLM 124 (208)
Q Consensus 72 ~~~---~--~----------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~ 124 (208)
+++ . . +.+++...+..+||++||........+...|...+ ...+..-+.++
T Consensus 326 ~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~g~~g~~~YaAaK--a~ldala~~~~ 403 (496)
T 3mje_A 326 SAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVWGSGGQPGYAAAN--AYLDALAEHRR 403 (496)
T ss_dssp CCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHTTCTTCHHHHHHH--HHHHHHHHHHH
T ss_pred CCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcCCCCCcHHHHHHH--HHHHHHHHHHH
Confidence 722 1 1 11233445678999999987654444444555533 22222223566
Q ss_pred hcCCCEEEEeccccccCCCCccceeee-cCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 125 ASGIPYTIIRTGVLQNTPGGKQGFQFE-EGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~~~~~~~-~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
..|++++.|.||.+.+........... ....+...++.++.+.++..++..+.
T Consensus 404 ~~Gi~v~sV~pG~w~~~gm~~~~~~~~~l~~~g~~~l~pe~~~~~l~~~l~~~~ 457 (496)
T 3mje_A 404 SLGLTASSVAWGTWGEVGMATDPEVHDRLVRQGVLAMEPEHALGALDQMLENDD 457 (496)
T ss_dssp HTTCCCEEEEECEESSSCC------CHHHHHTTEEEECHHHHHHHHHHHHHHTC
T ss_pred hcCCeEEEEECCcccCCccccChHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCC
Confidence 789999999999875322111100000 00112335688999999999987654
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.2e-10 Score=75.23 Aligned_cols=85 Identities=19% Similarity=0.093 Sum_probs=69.8
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----hhhhhhh
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF----ISNAGSL 83 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~----~~~a~~~ 83 (208)
+.|.+|+.+++.|+++| ++|++++|++++.......++.++.+|+.|.+++.++++++|+||++.+.. +..++.+
T Consensus 12 G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~ 91 (118)
T 3ic5_A 12 GAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLTPIIAKAAKA 91 (118)
T ss_dssp CCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchhhHHHHHHHHH
Confidence 34999999999999999 999999999887655445578899999999999999999999999885432 4556777
Q ss_pred cCCCeEEEec
Q 028525 84 KGVQHVILLS 93 (208)
Q Consensus 84 ~gv~~~v~~S 93 (208)
.|+++|.+.+
T Consensus 92 ~g~~~~~~~~ 101 (118)
T 3ic5_A 92 AGAHYFDLTE 101 (118)
T ss_dssp TTCEEECCCS
T ss_pred hCCCEEEecC
Confidence 8887765443
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.1e-10 Score=93.71 Aligned_cols=168 Identities=11% Similarity=0.035 Sum_probs=102.9
Q ss_pred cccCccHHHHHHHHHhCCCc-EEEE-EcCc-------------hh---h-h--hhcCCceEEEEcCCCCHHHHHHHhcC-
Q 028525 8 KRKKMNFRMVILSLIVKRTR-IKAL-VKDK-------------RN---A-M--ESFGTYVESMAGDASNKKFLKTALRG- 65 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~-V~~~-~R~~-------------~~---~-~--~~~~~~v~~v~~Dl~d~~~l~~~~~~- 65 (208)
+++|.||.+++++|+++|++ |+.+ .|+. ++ . . ...+.++.++.+|++|.+++.++++.
T Consensus 258 GgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i 337 (525)
T 3qp9_A 258 GAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAEAAARLLAGV 337 (525)
T ss_dssp STTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHTS
T ss_pred CCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHHHHHHHHHHH
Confidence 46899999999999999998 4445 6763 11 1 1 11245789999999999999999875
Q ss_pred -----CCEEEEcCC----Cch----------------------hhhh----hhcC-CCeEEEeceeeeccCCCCcccccc
Q 028525 66 -----VRSIICPSE----GFI----------------------SNAG----SLKG-VQHVILLSQLSVYRGSGGIQALMK 109 (208)
Q Consensus 66 -----~d~vi~~~~----~~~----------------------~~a~----~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~ 109 (208)
+|+|||+++ +.+ .+++ ++.+ ..+||++||+...........|..
T Consensus 338 ~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g~~g~~~Yaa 417 (525)
T 3qp9_A 338 SDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWGGAGQGAYAA 417 (525)
T ss_dssp CTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTCCTTCHHHHH
T ss_pred HhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCCCCCCHHHHH
Confidence 489998732 110 1111 2222 679999999876654444445544
Q ss_pred hhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 110 GNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 110 ~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
.+ ...+..-..++..+++++.|.||.+..+........-.........++.+++++++..++..+.
T Consensus 418 aK--a~l~~lA~~~~~~gi~v~sI~pG~~~tgm~~~~~~~~~~~~~g~~~l~pee~a~~l~~~l~~~~ 483 (525)
T 3qp9_A 418 GT--AFLDALAGQHRADGPTVTSVAWSPWEGSRVTEGATGERLRRLGLRPLAPATALTALDTALGHGD 483 (525)
T ss_dssp HH--HHHHHHHTSCCSSCCEEEEEEECCBTTSGGGSSHHHHHHHHTTBCCBCHHHHHHHHHHHHHHTC
T ss_pred HH--HHHHHHHHHHHhCCCCEEEEECCccccccccchhhHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Confidence 22 2221111122346899999999998222111110000000122456789999999999998654
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=92.58 Aligned_cols=174 Identities=12% Similarity=-0.054 Sum_probs=99.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEc---------Cchhhh----hhcCCceEEEEcCCCCHHHHHHHhc-------CCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVK---------DKRNAM----ESFGTYVESMAGDASNKKFLKTALR-------GVR 67 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R---------~~~~~~----~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d 67 (208)
+++|.||++++++|+++|++|++++| +.++.. +....+.. +.+|+.|.+++.++++ .+|
T Consensus 26 Gas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~D~~d~~~~~~~~~~~~~~~g~iD 104 (613)
T 3oml_A 26 GAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGE-AVADYNSVIDGAKVIETAIKAFGRVD 104 (613)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCC-EEECCCCGGGHHHHHC----------
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCe-EEEEeCCHHHHHHHHHHHHHHCCCCc
Confidence 35889999999999999999999987 332211 11111222 3479999988888775 469
Q ss_pred EEEEcCC----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--h
Q 028525 68 SIICPSE----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--L 115 (208)
Q Consensus 68 ~vi~~~~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~ 115 (208)
++|++++ .. ....+++.+..+||++||............|..+++-. +
T Consensus 105 iLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~~~~~~~Y~asKaal~~l 184 (613)
T 3oml_A 105 ILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGL 184 (613)
T ss_dssp CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCCCChHHHHHHHHHHHH
Confidence 9997632 10 01123556667999999987655444445565533211 1
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC-CCCcEEEEeeC
Q 028525 116 AEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP-QTGLIFEVVNG 188 (208)
Q Consensus 116 ~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~i~~~ 188 (208)
.+..-..+...++.+..|.||.+.. .... . . +.........+|+|.+++.++.+.. ..|+.+++.+|
T Consensus 185 t~~la~e~~~~gI~vn~v~Pg~~t~-~~~~--~-~--~~~~~~~~~pedvA~~v~~L~s~~~~~tG~~i~vdGG 252 (613)
T 3oml_A 185 ANTVAIEGARNNVLCNVIVPTAASR-MTEG--I-L--PDILFNELKPKLIAPVVAYLCHESCEDNGSYIESAAG 252 (613)
T ss_dssp HHHHHHHHGGGTEEEEEEEEC-------CC--C-C--CHHHHTTCCGGGTHHHHHHTTSTTCCCCSCEEEEETT
T ss_pred HHHHHHHhCccCeEEEEEECCCCCh-hhhh--c-c--chhhhhcCCHHHHHHHHHHhcCCCcCCCceEEEECCC
Confidence 1111122344689999999997422 1111 0 0 0111233577999999999887653 24777777644
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=98.82 E-value=5.7e-09 Score=82.40 Aligned_cols=127 Identities=13% Similarity=0.020 Sum_probs=77.6
Q ss_pred CccHHHHHHHHHhCCCcEEEEEcCc---------hhh---hhh------cCCceEEEEcCCCCH--H-------------
Q 028525 11 KMNFRMVILSLIVKRTRIKALVKDK---------RNA---MES------FGTYVESMAGDASNK--K------------- 57 (208)
Q Consensus 11 G~iG~~l~~~Ll~~g~~V~~~~R~~---------~~~---~~~------~~~~v~~v~~Dl~d~--~------------- 57 (208)
+.||++++++|+++|++|++.+|++ ++. ... ....+.++.+|+++. +
T Consensus 14 ~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~D 93 (329)
T 3lt0_A 14 NGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTANDIDEETKNNKRYN 93 (329)
T ss_dssp SSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGGGCCHHHHTSHHHH
T ss_pred CchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchhhhhhhhccccccc
Confidence 3799999999999999999777554 211 110 112367888888876 5
Q ss_pred -----HHHHHhc-------CCCEEEEcCC------Cch--------------------------hhhhhhcCCCeEEEec
Q 028525 58 -----FLKTALR-------GVRSIICPSE------GFI--------------------------SNAGSLKGVQHVILLS 93 (208)
Q Consensus 58 -----~l~~~~~-------~~d~vi~~~~------~~~--------------------------~~a~~~~gv~~~v~~S 93 (208)
++.++++ ..|++|++++ ..+ ...+++. .+||++|
T Consensus 94 lsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~--g~Iv~is 171 (329)
T 3lt0_A 94 MLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIMKPQ--SSIISLT 171 (329)
T ss_dssp TCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE--EEEEEEE
T ss_pred ccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhC--CeEEEEe
Confidence 5555543 4699998732 110 0112222 5899999
Q ss_pred eeeeccCCCCcc-cccchhHHH--hHHHHHHHHHh-cCCCEEEEeccccc
Q 028525 94 QLSVYRGSGGIQ-ALMKGNARK--LAEQDESMLMA-SGIPYTIIRTGVLQ 139 (208)
Q Consensus 94 s~~~~~~~~~~~-~~~~~~~~~--~~~~~e~~l~~-~~~~~tivRp~~~~ 139 (208)
|.....+..... .|..+++-. +.+.....+.. .++++..|.||++.
T Consensus 172 S~~~~~~~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~ 221 (329)
T 3lt0_A 172 YHASQKVVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLK 221 (329)
T ss_dssp CGGGTSCCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_pred CccccCCCCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceee
Confidence 987665433332 555543211 11222233445 69999999999875
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-07 Score=73.69 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=58.0
Q ss_pred CeEEEeceeeeccCCCCc-ccccchhHHH--hHHHHHHHHH-hcCCCEEEEeccccccCCCCccce--e----eecCCcC
Q 028525 87 QHVILLSQLSVYRGSGGI-QALMKGNARK--LAEQDESMLM-ASGIPYTIIRTGVLQNTPGGKQGF--Q----FEEGCAA 156 (208)
Q Consensus 87 ~~~v~~Ss~~~~~~~~~~-~~~~~~~~~~--~~~~~e~~l~-~~~~~~tivRp~~~~~~~~~~~~~--~----~~~~~~~ 156 (208)
.+||++||...+.+.... ..|..+++-. +.+.....+. ..+++++.|+||++.......... . +......
T Consensus 171 g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~ 250 (297)
T 1d7o_A 171 GASISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFIDTMIEYSYNNAPI 250 (297)
T ss_dssp EEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSCCSHHHHHHHHHHHHSSS
T ss_pred ceEEEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccccchhhhccccHHHHHHhhccCCC
Confidence 589999998765433232 3555533211 1111112233 369999999999986433221000 0 0000112
Q ss_pred CCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 157 NGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 157 ~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
....+.+|+|++++.++.++. ..|+.+++.+|-
T Consensus 251 ~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdgG~ 285 (297)
T 1d7o_A 251 QKTLTADEVGNAAAFLVSPLASAITGATIYVDNGL 285 (297)
T ss_dssp CCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 334678999999999886543 247888887653
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.2e-08 Score=68.29 Aligned_cols=82 Identities=15% Similarity=0.114 Sum_probs=64.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCCc-----hhhhhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTA-LRGVRSIICPSEGF-----ISNAGS 82 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~~-----~~~a~~ 82 (208)
+.|.+|+.+++.|.++|++|++++|++++.......++.++.+|.+|++.+.++ +.++|+||.+.+.. ....++
T Consensus 13 G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n~~~~~~a~ 92 (141)
T 3llv_A 13 GSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEFNLKILKALR 92 (141)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHHHHHHHHHHH
Confidence 579999999999999999999999998876544445688999999999998876 46789999885533 234455
Q ss_pred hcCCCeEE
Q 028525 83 LKGVQHVI 90 (208)
Q Consensus 83 ~~gv~~~v 90 (208)
+.+..+++
T Consensus 93 ~~~~~~ii 100 (141)
T 3llv_A 93 SVSDVYAI 100 (141)
T ss_dssp HHCCCCEE
T ss_pred HhCCceEE
Confidence 66655554
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=98.73 E-value=8.7e-08 Score=75.21 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=47.4
Q ss_pred CeEEEeceeeeccCCCCc-ccccchhH--HHhHHHHHHHHHh-cCCCEEEEeccccccCCCCccc------e--e----e
Q 028525 87 QHVILLSQLSVYRGSGGI-QALMKGNA--RKLAEQDESMLMA-SGIPYTIIRTGVLQNTPGGKQG------F--Q----F 150 (208)
Q Consensus 87 ~~~v~~Ss~~~~~~~~~~-~~~~~~~~--~~~~~~~e~~l~~-~~~~~tivRp~~~~~~~~~~~~------~--~----~ 150 (208)
.+||++||.....+.... ..|..+++ ..+.+.....+.. .+++++.|+||++......... + . +
T Consensus 185 g~Iv~isS~~~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 264 (319)
T 2ptg_A 185 GSALALSYIASEKVIPGYGGGMSSAKAALESDCRTLAFEAGRARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYS 264 (319)
T ss_dssp EEEEEEEECC------------------THHHHHHHHHHHHHHHCCEEEEEEECCCC-----------------------
T ss_pred ceEEEEeccccccccCccchhhHHHHHHHHHHHHHHHHHhccccCeeEEEEeeCCccChhhhhcccccchhhHHHHHHHH
Confidence 589999998765433222 35655432 1122211223443 6999999999998543211100 0 0 0
Q ss_pred ecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 151 EEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 151 ~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
..........+.+|+|++++.++.+.. ..|+.+.+.+|-
T Consensus 265 ~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdGG~ 305 (319)
T 2ptg_A 265 EANAPLQKELESDDVGRAALFLLSPLARAVTGATLYVDNGL 305 (319)
T ss_dssp --------CCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred hccCCCCCCCCHHHHHHHHHHHhCcccCCccCCEEEECCCc
Confidence 000011234567999999999887533 347788877553
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-07 Score=65.13 Aligned_cols=86 Identities=8% Similarity=-0.016 Sum_probs=65.8
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCCc------hhhhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTA-LRGVRSIICPSEGF------ISNAG 81 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~~------~~~a~ 81 (208)
+.|.+|+.+++.|.+.|++|++++|++++.......+..++.+|.+|++.+.++ +.++|+||++.+.. ....+
T Consensus 13 G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~ 92 (144)
T 2hmt_A 13 GLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLL 92 (144)
T ss_dssp CCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchHHHHHHHHHH
Confidence 469999999999999999999999988775443334567888999998888776 77899999885432 23445
Q ss_pred hhcCCCeEEEece
Q 028525 82 SLKGVQHVILLSQ 94 (208)
Q Consensus 82 ~~~gv~~~v~~Ss 94 (208)
+..+.++++..++
T Consensus 93 ~~~~~~~ii~~~~ 105 (144)
T 2hmt_A 93 KELDIPNIWVKAQ 105 (144)
T ss_dssp HHTTCSEEEEECC
T ss_pred HHcCCCeEEEEeC
Confidence 6677777765544
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-08 Score=79.54 Aligned_cols=132 Identities=10% Similarity=0.025 Sum_probs=79.8
Q ss_pred cccCccHHHHHHHHHhCCC-------cEEEEEcCch--hh----hhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRT-------RIKALVKDKR--NA----MESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~-------~V~~~~R~~~--~~----~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+++|+||++++..|+++|+ +|+++++.+. +. ..+....+.++ +|+.+.+++.++++++|+||++++
T Consensus 11 GaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~-~di~~~~~~~~a~~~~D~Vih~Ag 89 (327)
T 1y7t_A 11 GAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL-AGLEATDDPKVAFKDADYALLVGA 89 (327)
T ss_dssp STTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTE-EEEEEESCHHHHTTTCSEEEECCC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhccccccc-CCeEeccChHHHhCCCCEEEECCC
Confidence 4589999999999999886 8999988642 11 11111122333 577776677889999999998721
Q ss_pred -----Cc---------------hhhhhhhcC-CC-eEEEeceee-e--c---c---CCCCcccccchhHHHhHHH-HHHH
Q 028525 75 -----GF---------------ISNAGSLKG-VQ-HVILLSQLS-V--Y---R---GSGGIQALMKGNARKLAEQ-DESM 122 (208)
Q Consensus 75 -----~~---------------~~~a~~~~g-v~-~~v~~Ss~~-~--~---~---~~~~~~~~~~~~~~~~~~~-~e~~ 122 (208)
+. +.+++++.+ .+ +|+++|+.. . + . ...+..+|.. .+...++ ...+
T Consensus 90 ~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~~~~~~~~~p~~~yg~--tkl~~er~~~~~ 167 (327)
T 1y7t_A 90 APRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAM--TRLDHNRAKAQL 167 (327)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEEC--CHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHHHHHcCCCChhheecc--chHHHHHHHHHH
Confidence 11 234566664 54 777776532 1 1 1 1123334444 2222221 1122
Q ss_pred HHhcCCCEEEEeccccccCC
Q 028525 123 LMASGIPYTIIRTGVLQNTP 142 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~ 142 (208)
-+..+++.+.+||..++++.
T Consensus 168 a~~~g~~~~~vr~~~V~G~h 187 (327)
T 1y7t_A 168 AKKTGTGVDRIRRMTVWGNH 187 (327)
T ss_dssp HHHHTCCGGGEECCEEEBCS
T ss_pred HHHhCcChhheeeeEEEcCC
Confidence 23469999999999887754
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=7.4e-08 Score=75.51 Aligned_cols=178 Identities=13% Similarity=0.067 Sum_probs=96.4
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCch-----------hhh--hhcCCc-----eEEEEcCC------------C-----
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKR-----------NAM--ESFGTY-----VESMAGDA------------S----- 54 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~-----------~~~--~~~~~~-----v~~v~~Dl------------~----- 54 (208)
+|.||++++++|+++|++|++++|++. +.. .....+ +.++.+|+ +
T Consensus 20 s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~ 99 (315)
T 2o2s_A 20 SHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDKPEDVPQDIKDNKRY 99 (315)
T ss_dssp SSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSSTTSSCHHHHTCGGG
T ss_pred CCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccccccchhhhhhhccccc
Confidence 678999999999999999999987531 111 111111 24444443 2
Q ss_pred ---CHHHHHHHh-------cCCCEEEEcCC------Cchh----------------------hhh-hh--cCCCeEEEec
Q 028525 55 ---NKKFLKTAL-------RGVRSIICPSE------GFIS----------------------NAG-SL--KGVQHVILLS 93 (208)
Q Consensus 55 ---d~~~l~~~~-------~~~d~vi~~~~------~~~~----------------------~a~-~~--~gv~~~v~~S 93 (208)
|++++.+++ .++|++|++++ ..+. +++ .. .+ .+||++|
T Consensus 100 ~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~Iv~is 178 (315)
T 2o2s_A 100 AGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFGPIMNEG-GSAVTLS 178 (315)
T ss_dssp SSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHSTTEEEE-EEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhcC-CEEEEEe
Confidence 133444443 26799998732 1110 011 00 12 5899999
Q ss_pred eeeeccCCCCc-ccccchhHHH--hHHHHHHHHH-hcCCCEEEEeccccccCCCC-----c-cce--e----eecCCcCC
Q 028525 94 QLSVYRGSGGI-QALMKGNARK--LAEQDESMLM-ASGIPYTIIRTGVLQNTPGG-----K-QGF--Q----FEEGCAAN 157 (208)
Q Consensus 94 s~~~~~~~~~~-~~~~~~~~~~--~~~~~e~~l~-~~~~~~tivRp~~~~~~~~~-----~-~~~--~----~~~~~~~~ 157 (208)
|.......... ..|..+++-. +.+.....+. ..+++++.|+||++...... . ..+ . +.......
T Consensus 179 S~~~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 258 (315)
T 2o2s_A 179 YLAAERVVPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAASAIGKSGEKSFIDYAIDYSYNNAPLR 258 (315)
T ss_dssp EGGGTSCCTTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCHHHHHTTCSSSSCHHHHHHHHHHHHSSSC
T ss_pred cccccccCCCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccchhhhhccccccchhHHHHHHHHhccCCCC
Confidence 98766433222 2455533211 1111112233 36999999999987432100 0 000 0 00001112
Q ss_pred CcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 158 GSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 158 ~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
...+.+|+|++++.++.... ..|+.+.+.+|
T Consensus 259 r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 291 (315)
T 2o2s_A 259 RDLHSDDVGGAALFLLSPLARAVSGVTLYVDNG 291 (315)
T ss_dssp CCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CCCCHHHHHHHHHHHhCchhccCcCCEEEECCC
Confidence 34577999999999887533 24777777655
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-07 Score=65.13 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=63.0
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCc-hh---hhhhcCCceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCCc-----hh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDK-RN---AMESFGTYVESMAGDASNKKFLKTA-LRGVRSIICPSEGF-----IS 78 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~-~~---~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~~-----~~ 78 (208)
+.|.+|+.+++.|.+.|++|++++|++ ++ .......++.++.+|.+|++.+.++ ++++|+||.+.+.. ..
T Consensus 10 G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~ 89 (153)
T 1id1_A 10 GHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDADNAFVV 89 (153)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCChHHHHHHH
Confidence 579999999999999999999999975 32 2323345789999999999999887 88999999885543 22
Q ss_pred hhhhhc-CCCeEEE
Q 028525 79 NAGSLK-GVQHVIL 91 (208)
Q Consensus 79 ~a~~~~-gv~~~v~ 91 (208)
..++.. +..+++-
T Consensus 90 ~~a~~~~~~~~ii~ 103 (153)
T 1id1_A 90 LSAKDMSSDVKTVL 103 (153)
T ss_dssp HHHHHHTSSSCEEE
T ss_pred HHHHHHCCCCEEEE
Confidence 334444 5555543
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-06 Score=74.72 Aligned_cols=174 Identities=11% Similarity=-0.031 Sum_probs=101.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCc-hhhhh-h--cCCceEEEEcCC-CCHHHHHHH----hcCCCEEEEcCC----C
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDK-RNAME-S--FGTYVESMAGDA-SNKKFLKTA----LRGVRSIICPSE----G 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~-~~~~~-~--~~~~v~~v~~Dl-~d~~~l~~~----~~~~d~vi~~~~----~ 75 (208)
.++-||+++++.|+++|++|++.+|+. +...+ . .+..+..+.+|+ ++.+.+.+. +...|++|++++ .
T Consensus 330 as~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iDiLVnNAGi~~~~ 409 (604)
T 2et6_A 330 AGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTIDILVNNAGILRDR 409 (604)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCB
T ss_pred cchHHHHHHHHHHHHCCCEEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 477899999999999999999988643 22211 1 233456677888 554443322 346899998732 1
Q ss_pred c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcC
Q 028525 76 F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASG 127 (208)
Q Consensus 76 ~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~ 127 (208)
. ....+++.+-.+||++||............|..+++-. +.+..-..+...+
T Consensus 410 ~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~~~~~~Y~asKaal~~lt~~la~El~~~g 489 (604)
T 2et6_A 410 SFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNN 489 (604)
T ss_dssp CTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred ChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCCCChhHHHHHHHHHHHHHHHHHHhCccC
Confidence 1 01124445556999999987654333344555533211 1121223345579
Q ss_pred CCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC-CCCcEEEEeeC
Q 028525 128 IPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP-QTGLIFEVVNG 188 (208)
Q Consensus 128 ~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~i~~~ 188 (208)
+++..|.||. ..+-... . +. .........+|+|..++.++.... ..|+.+.+.+|
T Consensus 490 IrVn~v~PG~--~T~m~~~-~-~~--~~~~~~~~pe~vA~~v~~L~s~~~~itG~~~~vdGG 545 (604)
T 2et6_A 490 IKVNIVAPHA--ETAMTLS-I-MR--EQDKNLYHADQVAPLLVYLGTDDVPVTGETFEIGGG 545 (604)
T ss_dssp EEEEEEEECC--CCCC-------------CCSSCGGGTHHHHHHTTSTTCCCCSCEEEEETT
T ss_pred eEEEEEcCCC--CCccccc-c-Cc--hhhccCCCHHHHHHHHHHHhCCccCCCCcEEEECCC
Confidence 9999999994 2221111 1 11 111233477999999998876543 35677776654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.51 E-value=4.4e-07 Score=62.08 Aligned_cols=83 Identities=18% Similarity=0.049 Sum_probs=63.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC-CceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCCc-----hhhhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG-TYVESMAGDASNKKFLKTA-LRGVRSIICPSEGF-----ISNAG 81 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~~-----~~~a~ 81 (208)
+.|.+|+.+++.|.+.|++|++++|++++...... .++.++.+|..+++.+.++ +.++|+||++.+.. ....+
T Consensus 11 G~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~ 90 (140)
T 1lss_A 11 GIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVNLMSSLLA 90 (140)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHHHHHHHHH
Confidence 67999999999999999999999998876543321 2577889999998888765 67899999885432 23445
Q ss_pred hhcCCCeEEE
Q 028525 82 SLKGVQHVIL 91 (208)
Q Consensus 82 ~~~gv~~~v~ 91 (208)
+..+.+++|.
T Consensus 91 ~~~~~~~ii~ 100 (140)
T 1lss_A 91 KSYGINKTIA 100 (140)
T ss_dssp HHTTCCCEEE
T ss_pred HHcCCCEEEE
Confidence 5667777764
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=77.06 Aligned_cols=167 Identities=17% Similarity=0.136 Sum_probs=105.7
Q ss_pred cccCccHHHHHHHHH-hCCCc-EEEEEcCchh---h----hh--hcCCceEEEEcCCCCHHHHHHHhcC------CCEEE
Q 028525 8 KRKKMNFRMVILSLI-VKRTR-IKALVKDKRN---A----ME--SFGTYVESMAGDASNKKFLKTALRG------VRSII 70 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll-~~g~~-V~~~~R~~~~---~----~~--~~~~~v~~v~~Dl~d~~~l~~~~~~------~d~vi 70 (208)
+++|.||++++++|+ ++|++ |++++|+..+ . .+ ..+.++.++.+|++|.+++.++++. .|++|
T Consensus 537 Gg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~~~~~id~lV 616 (795)
T 3slk_A 537 GGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIPDEHPLTAVV 616 (795)
T ss_dssp TTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTSCEEEEE
T ss_pred cCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHhCCCEEEE
Confidence 358899999999999 78985 8888998432 1 11 1245688999999999999999864 48999
Q ss_pred EcCC----Cchh-------------------hhhh--hcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHh
Q 028525 71 CPSE----GFIS-------------------NAGS--LKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMA 125 (208)
Q Consensus 71 ~~~~----~~~~-------------------~a~~--~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~ 125 (208)
++++ +.+. ...+ .... +||++||............|...+ .+.+..-++++.
T Consensus 617 nnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~l-~iV~~SS~ag~~g~~g~~~YaAak--a~~~alA~~~~~ 693 (795)
T 3slk_A 617 HAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPDV-ALVLFSSVSGVLGSGGQGNYAAAN--SFLDALAQQRQS 693 (795)
T ss_dssp ECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTTS-EEEEEEETHHHHTCSSCHHHHHHH--HHHHHHHHHHHH
T ss_pred ECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhCC-EEEEEccHHhcCCCCCCHHHHHHH--HHHHHHHHHHHH
Confidence 8732 1110 0111 1223 899999987665444455565533 333333345667
Q ss_pred cCCCEEEEeccccccCCCCcc---ceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQ---GFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~---~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
.|++++.|.||.+....-... ...-.........++.++....+..++..+.
T Consensus 694 ~Gi~v~sI~pG~v~t~g~~~~~~~~~~~~~~~~g~~~l~~~e~~~~~~~~l~~~~ 748 (795)
T 3slk_A 694 RGLPTRSLAWGPWAEHGMASTLREAEQDRLARSGLLPISTEEGLSQFDAACGGAH 748 (795)
T ss_dssp TTCCEEEEEECCCSCCCHHHHHHHHHHHHHHHTTBCCCCHHHHHHHHHHHHTSSC
T ss_pred cCCeEEEEECCeECcchhhccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Confidence 899999999998753211000 0000000123456778888888888887654
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-06 Score=61.54 Aligned_cols=85 Identities=13% Similarity=-0.013 Sum_probs=64.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc-CCceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCCc-----hhhhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF-GTYVESMAGDASNKKFLKTA-LRGVRSIICPSEGF-----ISNAG 81 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~~-----~~~a~ 81 (208)
+.|.+|+.+++.|.+.|++|++++|++++..... ..++.++.+|..+++.+.++ +.++|+||.+.+.. ....+
T Consensus 26 G~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~~~~~~~~ 105 (155)
T 2g1u_A 26 GCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDSTNFFISMNA 105 (155)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHHHHHHHHHH
Confidence 5899999999999999999999999988765544 34677888999998888776 77899999885432 22344
Q ss_pred hh-cCCCeEEEec
Q 028525 82 SL-KGVQHVILLS 93 (208)
Q Consensus 82 ~~-~gv~~~v~~S 93 (208)
+. .+..+++...
T Consensus 106 ~~~~~~~~iv~~~ 118 (155)
T 2g1u_A 106 RYMFNVENVIARV 118 (155)
T ss_dssp HHTSCCSEEEEEC
T ss_pred HHHCCCCeEEEEE
Confidence 44 5666665443
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.2e-07 Score=61.19 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=57.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTA-LRGVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~ 75 (208)
+-|.+|+.+++.|.+.|++|+++++++++.......++.++.+|.++++.+.++ +.++|+||.+.+.
T Consensus 14 G~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 81 (140)
T 3fwz_A 14 GYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPN 81 (140)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSC
T ss_pred CcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCC
Confidence 689999999999999999999999999886554445789999999999988776 5789999988553
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.9e-07 Score=65.68 Aligned_cols=82 Identities=9% Similarity=-0.020 Sum_probs=63.5
Q ss_pred ccCccHHHHHHHHHhC-CCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHH--hcCCCEEEEcCCCc-----hhhh
Q 028525 9 RKKMNFRMVILSLIVK-RTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTA--LRGVRSIICPSEGF-----ISNA 80 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~-g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~--~~~~d~vi~~~~~~-----~~~a 80 (208)
+.|.+|+.+++.|.+. |++|++++|++++.......++.++.+|.+|++.+.++ +.++|.||.+.+.. ....
T Consensus 46 G~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~~~~~~~~ 125 (183)
T 3c85_A 46 GMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQGNQTALEQ 125 (183)
T ss_dssp CCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChHHHHHHHHH
Confidence 6899999999999999 99999999998876544444688899999999988887 78899999885533 2234
Q ss_pred hhhcC-CCeEE
Q 028525 81 GSLKG-VQHVI 90 (208)
Q Consensus 81 ~~~~g-v~~~v 90 (208)
++..+ ..+++
T Consensus 126 ~~~~~~~~~ii 136 (183)
T 3c85_A 126 LQRRNYKGQIA 136 (183)
T ss_dssp HHHTTCCSEEE
T ss_pred HHHHCCCCEEE
Confidence 45555 34444
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=98.32 E-value=9.3e-07 Score=66.22 Aligned_cols=80 Identities=14% Similarity=0.011 Sum_probs=63.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCCc-----hhhhhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTA-LRGVRSIICPSEGF-----ISNAGS 82 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~~-----~~~a~~ 82 (208)
+-|.+|+.+++.|.+.|+ |++++|++++..... .++.++.+|.+|++.+.++ +.++|.||.+.+.. ....++
T Consensus 16 G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~ 93 (234)
T 2aef_A 16 GWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIR 93 (234)
T ss_dssp SCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHHHHHHHHHH
Confidence 579999999999999999 999999988765444 5689999999999999888 78999999885432 234455
Q ss_pred hcCCC-eEE
Q 028525 83 LKGVQ-HVI 90 (208)
Q Consensus 83 ~~gv~-~~v 90 (208)
+.+.+ ++|
T Consensus 94 ~~~~~~~ii 102 (234)
T 2aef_A 94 KIDESVRII 102 (234)
T ss_dssp HHCSSSEEE
T ss_pred HHCCCCeEE
Confidence 56654 443
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=4.5e-06 Score=78.06 Aligned_cols=173 Identities=10% Similarity=0.011 Sum_probs=100.6
Q ss_pred ccCc-cHHHHHHHHHhCCCcEEEE-EcCchhhh----h---hc---CCceEEEEcCCCCHHHHHHHhc------------
Q 028525 9 RKKM-NFRMVILSLIVKRTRIKAL-VKDKRNAM----E---SF---GTYVESMAGDASNKKFLKTALR------------ 64 (208)
Q Consensus 9 ~~G~-iG~~l~~~Ll~~g~~V~~~-~R~~~~~~----~---~~---~~~v~~v~~Dl~d~~~l~~~~~------------ 64 (208)
+++. ||+++++.|+++|++|+++ .|+.++.. + .. +.++.++.+|++|.+++.++++
T Consensus 683 ASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~i~~~~~~~G~G 762 (1887)
T 2uv8_A 683 AGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIYDTEKNGGLG 762 (1887)
T ss_dssp CCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHHHSCTTTTSCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHHHHHhccccccC
Confidence 4776 9999999999999999998 46654421 1 11 3468899999999999988773
Q ss_pred -CCCEEEEcCC----C-chh------------------------hhhh------hcCCCeEEEeceeeeccCCCCccccc
Q 028525 65 -GVRSIICPSE----G-FIS------------------------NAGS------LKGVQHVILLSQLSVYRGSGGIQALM 108 (208)
Q Consensus 65 -~~d~vi~~~~----~-~~~------------------------~a~~------~~gv~~~v~~Ss~~~~~~~~~~~~~~ 108 (208)
..|++|++++ + .+. .++. +.+-.+||++||.....+ ....|.
T Consensus 763 ~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag~~g--g~~aYa 840 (1887)
T 2uv8_A 763 WDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTFG--GDGMYS 840 (1887)
T ss_dssp CCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTTCSS--CBTTHH
T ss_pred CCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHhccC--CCchHH
Confidence 4799998722 2 100 1111 112258999999865543 233454
Q ss_pred chhHHHhHHHHHHHHHh---cCCCEEEEecccccc-CCCCccce--eeecCCcCCCcccHHHHHHHHHHHhhCC-C--CC
Q 028525 109 KGNARKLAEQDESMLMA---SGIPYTIIRTGVLQN-TPGGKQGF--QFEEGCAANGSLSKEDAAFICVEALESI-P--QT 179 (208)
Q Consensus 109 ~~~~~~~~~~~e~~l~~---~~~~~tivRp~~~~~-~~~~~~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~-~--~~ 179 (208)
.+++-... .+.+.+.. ..++++.|.||++.. ........ .... .......+.+|+|.+++.++..+ . ..
T Consensus 841 ASKAAL~~-Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~~~~~~~~~-~~plr~~sPEEVA~avlfLaSd~~as~iT 918 (1887)
T 2uv8_A 841 ESKLSLET-LFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAEGIE-KMGVRTFSQKEMAFNLLGLLTPEVVELCQ 918 (1887)
T ss_dssp HHHHHGGG-HHHHHHHSSCTTTEEEEEEEECCEECC-----CCTTHHHHH-TTSCCCEEHHHHHHHHHGGGSHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHhCCCeEEEEEEecccccccccccchhHHHHHH-hcCCCCCCHHHHHHHHHHHhCCCcccccc
Confidence 43321111 11222332 128899999999862 21111000 0000 01113457899999999888654 1 13
Q ss_pred CcEEEE
Q 028525 180 GLIFEV 185 (208)
Q Consensus 180 ~~~~~i 185 (208)
++.+.+
T Consensus 919 Gq~I~V 924 (1887)
T 2uv8_A 919 KSPVMA 924 (1887)
T ss_dssp HSCEEE
T ss_pred CcEEEE
Confidence 566665
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-06 Score=63.16 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=64.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc-CCceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCCc-----hhhhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF-GTYVESMAGDASNKKFLKTA-LRGVRSIICPSEGF-----ISNAG 81 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~~-----~~~a~ 81 (208)
+.|.+|+++++.|.++|++|+++++++++..... ..++.++.+|.+|++.+.++ +.++|+||.+.+.. ....+
T Consensus 7 G~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a 86 (218)
T 3l4b_C 7 GGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNLFIAQLV 86 (218)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHHHHHHHHH
Confidence 5799999999999999999999999988754432 13678999999999999887 78899999885543 22334
Q ss_pred hh-cCCCeEEE
Q 028525 82 SL-KGVQHVIL 91 (208)
Q Consensus 82 ~~-~gv~~~v~ 91 (208)
+. .+..++|-
T Consensus 87 ~~~~~~~~iia 97 (218)
T 3l4b_C 87 MKDFGVKRVVS 97 (218)
T ss_dssp HHTSCCCEEEE
T ss_pred HHHcCCCeEEE
Confidence 43 57767653
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=5.1e-06 Score=77.59 Aligned_cols=173 Identities=10% Similarity=-0.021 Sum_probs=101.5
Q ss_pred ccCc-cHHHHHHHHHhCCCcEEEEE-cCchhhh-------hhc---CCceEEEEcCCCCHHHHHHHhc-----------C
Q 028525 9 RKKM-NFRMVILSLIVKRTRIKALV-KDKRNAM-------ESF---GTYVESMAGDASNKKFLKTALR-----------G 65 (208)
Q Consensus 9 ~~G~-iG~~l~~~Ll~~g~~V~~~~-R~~~~~~-------~~~---~~~v~~v~~Dl~d~~~l~~~~~-----------~ 65 (208)
++|. ||++++++|+++|++|++++ |+..+.. ... +..+.++.+|++|.+++.++++ .
T Consensus 660 ASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~i~~~~~~~G~~ 739 (1878)
T 2uv9_A 660 AGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNYIYDTKNGLGWD 739 (1878)
T ss_dssp CCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHHHCSSSSCCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHhhcccCCC
Confidence 5777 99999999999999999985 5444321 111 3468899999999999988873 4
Q ss_pred CCEEEEcCC----C-ch------h------------------hh------hhhcCCCeEEEeceeeeccCCCCcccccch
Q 028525 66 VRSIICPSE----G-FI------S------------------NA------GSLKGVQHVILLSQLSVYRGSGGIQALMKG 110 (208)
Q Consensus 66 ~d~vi~~~~----~-~~------~------------------~a------~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~ 110 (208)
.|++|++++ + .+ . .+ +.+.+-.+||++||.....+ ....|...
T Consensus 740 IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~g--g~~aYaAS 817 (1878)
T 2uv9_A 740 LDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTFG--NDGLYSES 817 (1878)
T ss_dssp CSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSSS--CCSSHHHH
T ss_pred CcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhccC--CchHHHHH
Confidence 799998722 2 10 0 00 01112258999999865433 23345443
Q ss_pred hHHHhHHHHHHHHHh---cCCCEEEEeccccc-cCCCCccce--eeecCCcCCCcccHHHHHHHHHHHhhCCC---CCCc
Q 028525 111 NARKLAEQDESMLMA---SGIPYTIIRTGVLQ-NTPGGKQGF--QFEEGCAANGSLSKEDAAFICVEALESIP---QTGL 181 (208)
Q Consensus 111 ~~~~~~~~~e~~l~~---~~~~~tivRp~~~~-~~~~~~~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~---~~~~ 181 (208)
++-... .+..++.. ..++++.|.||++. ......... .... .......+.+|+|.+++.++.... ..++
T Consensus 818 KAAL~a-Lt~~laAeEla~~IrVNaVaPG~V~gT~m~~~~~~~~~~~~-~~plr~~sPeEVA~avlfLaSd~a~s~iTGq 895 (1878)
T 2uv9_A 818 KLALET-LFNRWYSESWGNYLTICGAVIGWTRGTGLMSANNLVAEGVE-KLGVRTFSQQEMAFNLLGLMAPAIVNLCQSD 895 (1878)
T ss_dssp HHHHTT-HHHHHHHSTTTTTEEEEEEEECCBCCTTSCSHHHHTHHHHH-TTTCCCBCHHHHHHHHHHHHSHHHHHHHTTS
T ss_pred HHHHHH-HHHHHHHHHcCCCeEEEEEEecceecCcccccchhhHHHHH-hcCCCCCCHHHHHHHHHHHhCCcccccccCc
Confidence 321111 12222222 23899999999875 222111000 0000 011134578999999998876442 2356
Q ss_pred EEEE
Q 028525 182 IFEV 185 (208)
Q Consensus 182 ~~~i 185 (208)
.+.+
T Consensus 896 ~I~V 899 (1878)
T 2uv9_A 896 PVFA 899 (1878)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 6665
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.23 E-value=4.2e-06 Score=68.71 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=56.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC--CceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG--TYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~--~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
++|.+|+++++.|++.|++|++++|+.++...... .++..+.+|+.|.+++.++++++|+||++++
T Consensus 10 GaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~ 77 (450)
T 1ff9_A 10 GSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP 77 (450)
T ss_dssp CCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC
T ss_pred CCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCc
Confidence 69999999999999999999999999877544322 2477889999999999999999999998843
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=68.28 Aligned_cols=173 Identities=14% Similarity=-0.024 Sum_probs=96.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCc---------hhhh----hhcCCceEEEEcCCCCHHHHHHH-------hcCCCE
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDK---------RNAM----ESFGTYVESMAGDASNKKFLKTA-------LRGVRS 68 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~---------~~~~----~~~~~~v~~v~~Dl~d~~~l~~~-------~~~~d~ 68 (208)
.++-||+++++.|+++|++|++.+|+. ++.. +....+-+. ..|+.|.+++.++ +...|+
T Consensus 16 as~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~-~~d~~d~~~~~~~v~~~~~~~G~iDi 94 (604)
T 2et6_A 16 AGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVA-VADYNNVLDGDKIVETAVKNFGTVHV 94 (604)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEE-EEECCCTTCHHHHHHHHHHHHSCCCE
T ss_pred CCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeE-EEEcCCHHHHHHHHHHHHHHcCCCCE
Confidence 477899999999999999999987754 2211 111111122 2466665333222 346899
Q ss_pred EEEcCC----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hH
Q 028525 69 IICPSE----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LA 116 (208)
Q Consensus 69 vi~~~~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~ 116 (208)
+|++++ +. ....+++.+-.+||++||............|..+++-. +.
T Consensus 95 LVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~~~~~~~Y~asKaal~~lt 174 (604)
T 2et6_A 95 IINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQANYASAKSALLGFA 174 (604)
T ss_dssp EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTBHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCCCchHHHHHHHHHHHHH
Confidence 997732 11 01124445556999999986554333344555533211 11
Q ss_pred HHHHHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCC-CCcEEEEeeC
Q 028525 117 EQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ-TGLIFEVVNG 188 (208)
Q Consensus 117 ~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~-~~~~~~i~~~ 188 (208)
+..-..+...|+++..|.|+. ..+-... . . ..........+|+|..++.++..+.. .|+.+.+.+|
T Consensus 175 ~~la~El~~~gIrVn~v~Pg~--~T~m~~~-~-~--~~~~~~~~~pe~vA~~v~~L~s~~~~itG~~~~vdgG 241 (604)
T 2et6_A 175 ETLAKEGAKYNIKANAIAPLA--RSRMTES-I-M--PPPMLEKLGPEKVAPLVLYLSSAENELTGQFFEVAAG 241 (604)
T ss_dssp HHHHHHHGGGTEEEEEEEECC--CCHHHHT-T-S--CHHHHTTCSHHHHHHHHHHHTSSSCCCCSCEEEEETT
T ss_pred HHHHHHhCccCeEEEEEccCC--cCccccc-c-C--ChhhhccCCHHHHHHHHHHHhCCcccCCCCEEEECCC
Confidence 112223445799999999973 2110000 0 0 00011235789999999998876532 3677776644
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.2e-06 Score=66.33 Aligned_cols=82 Identities=17% Similarity=0.095 Sum_probs=62.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----hhhhhhhc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF----ISNAGSLK 84 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~----~~~a~~~~ 84 (208)
+.|++|+.+++.|. +.++|.+.+|+.+++.... ..+..+..|..|.+++.++++++|+||++.|.. +.++|.++
T Consensus 23 GaG~vG~~~~~~L~-~~~~v~~~~~~~~~~~~~~-~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~~~v~~~~~~~ 100 (365)
T 3abi_A 23 GAGNIGRAIAWDLK-DEFDVYIGDVNNENLEKVK-EFATPLKVDASNFDKLVEVMKEFELVIGALPGFLGFKSIKAAIKS 100 (365)
T ss_dssp CCSHHHHHHHHHHT-TTSEEEEEESCHHHHHHHT-TTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh-cCCCeEEEEcCHHHHHHHh-ccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcccchHHHHHHhc
Confidence 57999999998876 4689999999987765443 457888999999999999999999999986543 33445555
Q ss_pred CCCeEEEec
Q 028525 85 GVQHVILLS 93 (208)
Q Consensus 85 gv~~~v~~S 93 (208)
|+ +++-+|
T Consensus 101 g~-~yvD~s 108 (365)
T 3abi_A 101 KV-DMVDVS 108 (365)
T ss_dssp TC-EEEECC
T ss_pred Cc-ceEeee
Confidence 54 344333
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.3e-05 Score=63.56 Aligned_cols=64 Identities=5% Similarity=-0.020 Sum_probs=49.4
Q ss_pred ccCccHHH--HHHHHHhCCCcEEEEEcCchh---------------hh---hhcCCceEEEEcCCCCHHHHHHHhc----
Q 028525 9 RKKMNFRM--VILSLIVKRTRIKALVKDKRN---------------AM---ESFGTYVESMAGDASNKKFLKTALR---- 64 (208)
Q Consensus 9 ~~G~iG~~--l~~~Ll~~g~~V~~~~R~~~~---------------~~---~~~~~~v~~v~~Dl~d~~~l~~~~~---- 64 (208)
+++.||.+ +++.|.++|++|+++.|+... .. ...+..+..+.+|++|++++.++++
T Consensus 68 assGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~v~~~v~~i~~ 147 (418)
T 4eue_A 68 ASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNETKDKVIKYIKD 147 (418)
T ss_dssp CSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 57789999 999999999999999986432 11 1224468889999999998887764
Q ss_pred ---CCCEEEEc
Q 028525 65 ---GVRSIICP 72 (208)
Q Consensus 65 ---~~d~vi~~ 72 (208)
..|++|++
T Consensus 148 ~~G~IDiLVnN 158 (418)
T 4eue_A 148 EFGKIDLFVYS 158 (418)
T ss_dssp TTCCEEEEEEC
T ss_pred HcCCCCEEEEC
Confidence 35999976
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-05 Score=64.43 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=49.5
Q ss_pred ccCccHHHHHHHHHh-CCCcEEEEEcCchhhh------------------hhcCCceEEEEcCCCCHHHHHHHhc-----
Q 028525 9 RKKMNFRMVILSLIV-KRTRIKALVKDKRNAM------------------ESFGTYVESMAGDASNKKFLKTALR----- 64 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~-~g~~V~~~~R~~~~~~------------------~~~~~~v~~v~~Dl~d~~~l~~~~~----- 64 (208)
+++-||+++++.|++ .|++|.+..|+.+... ...+..+..+.+|++|++++.++++
T Consensus 69 ASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v~~~v~~i~~~ 148 (422)
T 3s8m_A 69 ASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAARAQVIELIKTE 148 (422)
T ss_dssp CSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 477899999999999 9999999998754311 1123457889999999988777653
Q ss_pred ---CCCEEEEc
Q 028525 65 ---GVRSIICP 72 (208)
Q Consensus 65 ---~~d~vi~~ 72 (208)
.+|++|++
T Consensus 149 ~~G~IDiLVNN 159 (422)
T 3s8m_A 149 MGGQVDLVVYS 159 (422)
T ss_dssp SCSCEEEEEEC
T ss_pred cCCCCCEEEEc
Confidence 46999976
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.8e-06 Score=78.80 Aligned_cols=174 Identities=11% Similarity=0.005 Sum_probs=97.9
Q ss_pred ccCc-cHHHHHHHHHhCCCcEEEE-EcCchhhh---hhc-------CCceEEEEcCCCCHHHHHHHhc------------
Q 028525 9 RKKM-NFRMVILSLIVKRTRIKAL-VKDKRNAM---ESF-------GTYVESMAGDASNKKFLKTALR------------ 64 (208)
Q Consensus 9 ~~G~-iG~~l~~~Ll~~g~~V~~~-~R~~~~~~---~~~-------~~~v~~v~~Dl~d~~~l~~~~~------------ 64 (208)
++|. ||++++++|+++|++|+++ .|+.++.. +.. +..+.++.+|++|.+++.++++
T Consensus 484 ASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~I~e~~~~~GfG 563 (1688)
T 2pff_A 484 AGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIYDTEKNGGLG 563 (1688)
T ss_dssp CSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHHHHSCTTSSSCC
T ss_pred CChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHHHHHhccccccC
Confidence 4676 9999999999999999998 46554321 111 3357889999999999888763
Q ss_pred -CCCEEEEcCC----C-ch------------------------hhhh------hhcCCCeEEEeceeeeccCCCCccccc
Q 028525 65 -GVRSIICPSE----G-FI------------------------SNAG------SLKGVQHVILLSQLSVYRGSGGIQALM 108 (208)
Q Consensus 65 -~~d~vi~~~~----~-~~------------------------~~a~------~~~gv~~~v~~Ss~~~~~~~~~~~~~~ 108 (208)
.+|++|++++ + .+ ..++ .+.+-.+||++||.....+ ....|.
T Consensus 564 ~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG~~G--g~saYa 641 (1688)
T 2pff_A 564 WDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTFG--GDGMYS 641 (1688)
T ss_dssp CCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTTTSS--CBTTHH
T ss_pred CCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHhccC--CchHHH
Confidence 4799997621 2 10 0111 1112258999999765433 233444
Q ss_pred chhHHHhHHHHHHHHHh---cCCCEEEEecccccc-CCCCccceeee-cCCcCCCcccHHHHHHHHHHHhhCCC---CCC
Q 028525 109 KGNARKLAEQDESMLMA---SGIPYTIIRTGVLQN-TPGGKQGFQFE-EGCAANGSLSKEDAAFICVEALESIP---QTG 180 (208)
Q Consensus 109 ~~~~~~~~~~~e~~l~~---~~~~~tivRp~~~~~-~~~~~~~~~~~-~~~~~~~~v~~~Dva~~~~~~l~~~~---~~~ 180 (208)
.+++-... .+.+.+.. ..++++.|.||++.. ........... .........+.+|+|.+++.++..+. ..+
T Consensus 642 ASKAAL~a-LttrsLAeEla~~IRVNaVaPG~V~TT~M~~~~e~~~~~l~~iplR~~sPEEVA~aIlFLaSd~sAs~ITG 720 (1688)
T 2pff_A 642 ESKLSLET-LFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAEGIEKMGVRTFSQKEMAFNLLGLLTPEVVELCQK 720 (1688)
T ss_dssp HHHHHHTH-HHHHTTTSSCTTTEECCCCCCCCCCCCSSSCTTTTCSTTTSSSSCCCCCCCTTHHHHHHHTSTTHHHHHTT
T ss_pred HHHHHHHH-HHHHHHHHHcCCCeEEEEEEECcCcCCcccCCchHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCccccccC
Confidence 42221110 00111221 127788888998852 21111000000 00011133467999999999886551 135
Q ss_pred cEEEE
Q 028525 181 LIFEV 185 (208)
Q Consensus 181 ~~~~i 185 (208)
+.+.+
T Consensus 721 q~I~V 725 (1688)
T 2pff_A 721 SPVMA 725 (1688)
T ss_dssp SCCCC
T ss_pred cEEEE
Confidence 55554
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.3e-05 Score=62.03 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=49.7
Q ss_pred ccCccHHHHHHHHHh-CCCcEEEEEcCchhh---------------h---hhcCCceEEEEcCCCCHHHHHHHhc-----
Q 028525 9 RKKMNFRMVILSLIV-KRTRIKALVKDKRNA---------------M---ESFGTYVESMAGDASNKKFLKTALR----- 64 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~-~g~~V~~~~R~~~~~---------------~---~~~~~~v~~v~~Dl~d~~~l~~~~~----- 64 (208)
+++-||+++++.|++ .|++|.++.|+.+.. . ...+..+..+.+|++|++++.++++
T Consensus 55 as~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v~~~v~~i~~~ 134 (405)
T 3zu3_A 55 ASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIKQLTIDAIKQD 134 (405)
T ss_dssp CSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 477899999999999 999999998864321 1 1123457889999999998887764
Q ss_pred --CCCEEEEc
Q 028525 65 --GVRSIICP 72 (208)
Q Consensus 65 --~~d~vi~~ 72 (208)
..|++|++
T Consensus 135 ~G~IDiLVNN 144 (405)
T 3zu3_A 135 LGQVDQVIYS 144 (405)
T ss_dssp TSCEEEEEEC
T ss_pred cCCCCEEEEc
Confidence 46999976
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=5.9e-06 Score=63.82 Aligned_cols=66 Identities=9% Similarity=-0.002 Sum_probs=54.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cC--CceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FG--TYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~--~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
++|.+|+++++.|+++|++|+++.|+.++..+. .. .++.++.+|++|++++.++++.+|+||++++
T Consensus 127 aaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~ag 197 (287)
T 1lu9_A 127 GTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGA 197 (287)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECCC
T ss_pred CCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEECCC
Confidence 489999999999999999999999987663321 11 1467788999999999999999999998843
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2e-05 Score=63.96 Aligned_cols=67 Identities=13% Similarity=0.049 Sum_probs=58.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTA-LRGVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~ 75 (208)
+-|.+|+.+++.|.+.|++|++++++++........++.++.+|.++++.+.++ +.++|+||.+.+.
T Consensus 11 G~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~ 78 (413)
T 3l9w_A 11 GFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDD 78 (413)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSS
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCC
Confidence 579999999999999999999999999886555445789999999999999888 7889999988543
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.7e-05 Score=64.32 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=61.7
Q ss_pred ccCccHHHHHHHHHhCC---CcEEEEEcCchhhhhh---cC----CceEEEEcCCCCHHHHHHHhcC--CCEEEEcCCCc
Q 028525 9 RKKMNFRMVILSLIVKR---TRIKALVKDKRNAMES---FG----TYVESMAGDASNKKFLKTALRG--VRSIICPSEGF 76 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g---~~V~~~~R~~~~~~~~---~~----~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~~~ 76 (208)
+.|.+|+.+++.|+++| .+|.+.+|+.++..+. .. .++..+.+|++|.+++.+++++ +|+||++++..
T Consensus 8 GaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVin~ag~~ 87 (405)
T 4ina_A 8 GAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVLNIALPY 87 (405)
T ss_dssp CCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEEECSCGG
T ss_pred CCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEEECCCcc
Confidence 45999999999999988 3899999998774322 11 2588999999999999999987 89999885432
Q ss_pred ----hhhhhhhcCCC
Q 028525 77 ----ISNAGSLKGVQ 87 (208)
Q Consensus 77 ----~~~a~~~~gv~ 87 (208)
+.+++.++|+.
T Consensus 88 ~~~~v~~a~l~~g~~ 102 (405)
T 4ina_A 88 QDLTIMEACLRTGVP 102 (405)
T ss_dssp GHHHHHHHHHHHTCC
T ss_pred cChHHHHHHHHhCCC
Confidence 34556677775
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.3e-05 Score=64.62 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=55.5
Q ss_pred ccCccHHHHHHHHHhC-CCcEEEEEcCchhhhhhcC-CceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVK-RTRIKALVKDKRNAMESFG-TYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~-g~~V~~~~R~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|.+|+.+++.|++. +++|++++|+.++..+... .++..+.+|+.|.+++.++++++|+||++++
T Consensus 30 GAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp 97 (467)
T 2axq_A 30 GSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIP 97 (467)
T ss_dssp CCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSC
T ss_pred CChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCc
Confidence 5799999999999998 7999999999877543321 2577888999999999999999999999844
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.79 E-value=2.2e-05 Score=61.92 Aligned_cols=77 Identities=13% Similarity=0.010 Sum_probs=61.8
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCCc-----hhhhhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTA-LRGVRSIICPSEGF-----ISNAGS 82 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~~-----~~~a~~ 82 (208)
+-|.+|+.+++.|.++|+ |+++++++++.. ....++.++.+|.+|++.+.++ ++++|+|+.+.+.. ....++
T Consensus 122 G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~ar 199 (336)
T 1lnq_A 122 GWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIR 199 (336)
T ss_dssp SCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHHHHHHHHHHH
Confidence 579999999999999999 999999988766 4446789999999999999988 78899999875432 223455
Q ss_pred hcCCC
Q 028525 83 LKGVQ 87 (208)
Q Consensus 83 ~~gv~ 87 (208)
+.+.+
T Consensus 200 ~~~~~ 204 (336)
T 1lnq_A 200 KIDES 204 (336)
T ss_dssp TTCTT
T ss_pred HHCCC
Confidence 55554
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.66 E-value=5.4e-05 Score=62.31 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=56.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC-CceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG-TYVESMAGDASNKKFLKTA-LRGVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~ 75 (208)
+-|.+|++|++.|.+.||+|+++.++++....... -++.++.||.++++.|.++ ++.+|.+|.+++.
T Consensus 10 G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~ 78 (461)
T 4g65_A 10 GAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNT 78 (461)
T ss_dssp CCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSC
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCC
Confidence 68999999999999999999999999887644321 2588999999999999988 5779999877543
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00022 Score=69.53 Aligned_cols=130 Identities=12% Similarity=0.051 Sum_probs=84.1
Q ss_pred cccCccHHHHHHHHHhCCCc-EEEEEcCchhh-------hhh--cCCceEEEEcCCCCHHHHHHHhc------CCCEEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTR-IKALVKDKRNA-------MES--FGTYVESMAGDASNKKFLKTALR------GVRSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~-V~~~~R~~~~~-------~~~--~~~~v~~v~~Dl~d~~~l~~~~~------~~d~vi~ 71 (208)
+++|.||++++++|+++|++ |++++|+..+. .++ .+.++.++.+|++|.+++.++++ ..|++|+
T Consensus 1891 Ggs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~~g~id~lVn 1970 (2512)
T 2vz8_A 1891 GGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQLGPVGGVFN 1970 (2512)
T ss_dssp STTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHHHSCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 35889999999999999997 77778875431 111 23467888999999999888764 4699998
Q ss_pred cCC----Cc----------------------hhhhhhh--cCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHH
Q 028525 72 PSE----GF----------------------ISNAGSL--KGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESML 123 (208)
Q Consensus 72 ~~~----~~----------------------~~~a~~~--~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l 123 (208)
+++ +. +.+++.. ....+||++||............|... |......-++.
T Consensus 1971 nAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~~g~~~Y~aa--Kaal~~l~~~r 2048 (2512)
T 2vz8_A 1971 LAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNAGQANYGFA--NSAMERICEKR 2048 (2512)
T ss_dssp CCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTCTTCHHHHHH--HHHHHHHHHHH
T ss_pred CCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCCCCcHHHHHH--HHHHHHHHHHH
Confidence 732 11 0011111 123689999998765443333445442 32222223456
Q ss_pred HhcCCCEEEEeccccc
Q 028525 124 MASGIPYTIIRTGVLQ 139 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~ 139 (208)
+..|++...+..|.+.
T Consensus 2049 r~~Gl~~~a~~~g~~~ 2064 (2512)
T 2vz8_A 2049 RHDGLPGLAVQWGAIG 2064 (2512)
T ss_dssp HHTTSCCCEEEECCBC
T ss_pred HHCCCcEEEEEccCcC
Confidence 6789999999887653
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=4.8e-05 Score=59.09 Aligned_cols=64 Identities=11% Similarity=0.040 Sum_probs=45.1
Q ss_pred chhhhc--cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 2 GPMKKM--KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 2 ~~~~~~--~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
|-|++. .+.|..|+.+++.|++.||+|++++|++++...+...+..+. ++..++++++|+||.|
T Consensus 1 G~M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a-------~s~~e~~~~~dvv~~~ 66 (300)
T 3obb_A 1 GHMKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAA-------RSARDAVQGADVVISM 66 (300)
T ss_dssp --CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEEC-------SSHHHHHTTCSEEEEC
T ss_pred CCcCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEc-------CCHHHHHhcCCceeec
Confidence 567764 479999999999999999999999999988655433333321 2234456667777765
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00019 Score=56.38 Aligned_cols=92 Identities=12% Similarity=0.054 Sum_probs=58.7
Q ss_pred hhhhc-cc-cCccHHHHHHHHHhCC--CcEEEEEcCchh--hhhhcCCceE-EEEcCCCCHHHHHHHhcCCCEEEEcC--
Q 028525 3 PMKKM-KR-KKMNFRMVILSLIVKR--TRIKALVKDKRN--AMESFGTYVE-SMAGDASNKKFLKTALRGVRSIICPS-- 73 (208)
Q Consensus 3 ~~~~~-~~-~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~--~~~~~~~~v~-~v~~Dl~d~~~l~~~~~~~d~vi~~~-- 73 (208)
|||.. .+ +|++|..++..|+++| ++|+++++++++ ..++...... .+.+ +.+.+++.++++++|+||++.
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~-~~~t~d~~~al~gaDvVi~~ag~ 86 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRG-FLGQQQLEAALTGMDLIIVPAGV 86 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEE-EESHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEE-EeCCCCHHHHcCCCCEEEEcCCc
Confidence 45443 24 8999999999999998 899999977652 1111111111 1122 334567788999999999872
Q ss_pred C---Cc---------------hhhhhhhcCCCeEEEecee
Q 028525 74 E---GF---------------ISNAGSLKGVQHVILLSQL 95 (208)
Q Consensus 74 ~---~~---------------~~~a~~~~gv~~~v~~Ss~ 95 (208)
+ +. +.+++.+.+.+.+|+++|-
T Consensus 87 ~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SN 126 (326)
T 1smk_A 87 PRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN 126 (326)
T ss_dssp CCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 2 11 2234556677777777763
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00026 Score=52.17 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=45.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|.+|+.+++.|.+.|++|++++|++++.......++.+. ++.++++++|+||.+.+
T Consensus 35 G~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~--------~~~~~~~~~DvVi~av~ 92 (215)
T 2vns_A 35 GSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT--------FQEEAVSSPEVIFVAVF 92 (215)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE--------EHHHHTTSCSEEEECSC
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee--------cHHHHHhCCCEEEECCC
Confidence 69999999999999999999999999877554433345432 34567889999998843
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.32 E-value=9.2e-05 Score=58.27 Aligned_cols=63 Identities=6% Similarity=-0.065 Sum_probs=43.0
Q ss_pred ccCccHHHHHHHHHhCCC-------cEEEEEcC----chhhh----hhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRT-------RIKALVKD----KRNAM----ESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-------~V~~~~R~----~~~~~----~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+|++|++++..|+.+|+ +|+.++++ .++.. ++......+ ..|+...+++.++++++|+||++
T Consensus 13 aaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~~~i~~~~~~~~al~~aD~Vi~~ 90 (329)
T 1b8p_A 13 AAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-LAGMTAHADPMTAFKDADVALLV 90 (329)
T ss_dssp TTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-EEEEEEESSHHHHTTTCSEEEEC
T ss_pred CCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-cCcEEEecCcHHHhCCCCEEEEe
Confidence 479999999999998885 79998887 43221 111111111 23555556677899999999987
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00023 Score=56.47 Aligned_cols=80 Identities=11% Similarity=-0.044 Sum_probs=48.4
Q ss_pred cccCccHHHHHHHHHhCC-----C-cEEEEEcCch--h-hhhhcC-----CceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKR-----T-RIKALVKDKR--N-AMESFG-----TYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-----~-~V~~~~R~~~--~-~~~~~~-----~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.||++|+.|++.|++++ + +++++.++.+ + .....+ ..+.+ .|+ +++ .+.++|+||+|.
T Consensus 16 GATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~--~~~-~~~----~~~~~DvVf~al 88 (352)
T 2nqt_A 16 GASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVV--EPT-EAA----VLGGHDAVFLAL 88 (352)
T ss_dssp TTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBC--EEC-CHH----HHTTCSEEEECC
T ss_pred CCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeee--ccC-CHH----HhcCCCEEEECC
Confidence 359999999999999887 3 7888864332 2 221111 11222 233 333 356899999985
Q ss_pred CCc----hhhhhhhcCCCeEEEeceee
Q 028525 74 EGF----ISNAGSLKGVQHVILLSQLS 96 (208)
Q Consensus 74 ~~~----~~~a~~~~gv~~~v~~Ss~~ 96 (208)
+.. ....+ ++|+ ++|-+|+..
T Consensus 89 g~~~s~~~~~~~-~~G~-~vIDlSa~~ 113 (352)
T 2nqt_A 89 PHGHSAVLAQQL-SPET-LIIDCGADF 113 (352)
T ss_dssp TTSCCHHHHHHS-CTTS-EEEECSSTT
T ss_pred CCcchHHHHHHH-hCCC-EEEEECCCc
Confidence 432 34445 6675 677777653
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00072 Score=53.77 Aligned_cols=62 Identities=6% Similarity=-0.199 Sum_probs=43.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|.+|..+++.|++.||+|++++|++++.......++.. ..+.+++.+..+..|+||.+.
T Consensus 28 IGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~----~~s~~e~~~~a~~~DvVi~~v 89 (358)
T 4e21_A 28 IGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAG----ARSIEEFCAKLVKPRVVWLMV 89 (358)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBC----CSSHHHHHHHSCSSCEEEECS
T ss_pred ECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEE----eCCHHHHHhcCCCCCEEEEeC
Confidence 36999999999999999999999999988765544333331 234444333333349999873
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0009 Score=49.75 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=43.0
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHH----HHhcCCCEEEEc
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLK----TALRGVRSIICP 72 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~----~~~~~~d~vi~~ 72 (208)
+|.+|.+++++|+++|++|+.+.|+.+... ..+.++.++ |.+..+++. +.+.++|++|++
T Consensus 28 SG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~-~~~~~~~~~--~v~s~~em~~~v~~~~~~~Dili~a 91 (232)
T 2gk4_A 28 TGHLGKIITETLLSAGYEVCLITTKRALKP-EPHPNLSIR--EITNTKDLLIEMQERVQDYQVLIHS 91 (232)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEECTTSCCC-CCCTTEEEE--ECCSHHHHHHHHHHHGGGCSEEEEC
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCccccc-cCCCCeEEE--EHhHHHHHHHHHHHhcCCCCEEEEc
Confidence 899999999999999999999999764211 112356655 444544444 344678999987
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00045 Score=53.55 Aligned_cols=58 Identities=5% Similarity=-0.193 Sum_probs=37.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|..|+.+++.|++.||+|++++|++++...+...+..+. ++..++++++|+||.+
T Consensus 11 IGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~-------~s~~e~~~~~dvvi~~ 68 (297)
T 4gbj_A 11 LGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVV-------ENAIDAITPGGIVFSV 68 (297)
T ss_dssp ECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEEC-------SSGGGGCCTTCEEEEC
T ss_pred EecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEe-------CCHHHHHhcCCceeee
Confidence 479999999999999999999999999988655544444432 1223466778888876
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00061 Score=53.88 Aligned_cols=66 Identities=11% Similarity=-0.041 Sum_probs=43.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCC-ceEEEEc------CCC-CHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGT-YVESMAG------DAS-NKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~-~v~~v~~------Dl~-d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|.+|+.++..|.+.||+|++++|++++....... ++.+... .+. ..+++.+++.++|+||.+.+
T Consensus 11 G~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 84 (359)
T 1bg6_A 11 GLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP 84 (359)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence 699999999999999999999999988764332211 2221110 010 11234456788999998844
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0024 Score=53.80 Aligned_cols=75 Identities=13% Similarity=-0.022 Sum_probs=59.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHh-cCCCEEEEcCCCc-----hhhhhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTAL-RGVRSIICPSEGF-----ISNAGS 82 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~-~~~d~vi~~~~~~-----~~~a~~ 82 (208)
+-|.+|+++++.|.+.|++|+++++++++..+. ..++.+|.+|++.+.++= +.+|++|.+.+.. ....++
T Consensus 355 G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~----~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~~ni~~~~~ak 430 (565)
T 4gx0_A 355 GHGRIGCAAAAFLDRKPVPFILIDRQESPVCND----HVVVYGDATVGQTLRQAGIDRASGIIVTTNDDSTNIFLTLACR 430 (565)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCS----SCEEESCSSSSTHHHHHTTTSCSEEEECCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECChHHHhhc----CCEEEeCCCCHHHHHhcCccccCEEEEECCCchHHHHHHHHHH
Confidence 579999999999999999999999998876543 278999999999998873 6789999885433 223455
Q ss_pred hcCCC
Q 028525 83 LKGVQ 87 (208)
Q Consensus 83 ~~gv~ 87 (208)
+.+.+
T Consensus 431 ~l~~~ 435 (565)
T 4gx0_A 431 HLHSH 435 (565)
T ss_dssp HHCSS
T ss_pred HHCCC
Confidence 66654
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00039 Score=53.87 Aligned_cols=67 Identities=6% Similarity=-0.181 Sum_probs=44.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEE--------cCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMA--------GDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~--------~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..|.+.||+|++++|++++.......++.+.. .+..+.+++.++++++|+||.+.+
T Consensus 9 iG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~ 83 (316)
T 2ew2_A 9 AGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK 83 (316)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred ECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence 4799999999999999999999999988764333222333221 112233333334457899888743
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.002 Score=50.33 Aligned_cols=60 Identities=8% Similarity=-0.103 Sum_probs=46.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|..+++.|++.||+|++++|++++.......++... .++.++++++|+||.+.+
T Consensus 37 IG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~-------~~~~e~~~~aDvVi~~vp 96 (320)
T 4dll_A 37 LGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIH-------EQARAAARDADIVVSMLE 96 (320)
T ss_dssp ECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEE-------SSHHHHHTTCSEEEECCS
T ss_pred ECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEee-------CCHHHHHhcCCEEEEECC
Confidence 369999999999999999999999999887655444344332 234467788999998844
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00053 Score=53.33 Aligned_cols=60 Identities=12% Similarity=-0.001 Sum_probs=43.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.+++.|++.||+|++++|++++.......++.. . +++.++++++|+||.+.+
T Consensus 15 IG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~---~~~~e~~~~aDvVi~~vp 74 (306)
T 3l6d_A 15 IGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHL----C---ESVKAALSASPATIFVLL 74 (306)
T ss_dssp ECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEE----C---SSHHHHHHHSSEEEECCS
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCee----c---CCHHHHHhcCCEEEEEeC
Confidence 36999999999999999999999999988754432223322 1 233456677899998744
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0058 Score=50.24 Aligned_cols=82 Identities=15% Similarity=0.160 Sum_probs=63.7
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCCc-----hhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTA-LRGVRSIICPSEGF-----ISN 79 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~~-----~~~ 79 (208)
+-|.+|.++++.| +++++|.++.++.++... .+ ++..++.||.+|++-|.++ +..+|+++.+++.. ...
T Consensus 242 GgG~ig~~lA~~L-~~~~~v~iIE~d~~r~~~la~~l-~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~l 319 (461)
T 4g65_A 242 GGGNIGASLAKRL-EQTYSVKLIERNLQRAEKLSEEL-ENTIVFCGDAADQELLTEENIDQVDVFIALTNEDETNIMSAM 319 (461)
T ss_dssp CCSHHHHHHHHHH-TTTSEEEEEESCHHHHHHHHHHC-TTSEEEESCTTCHHHHHHTTGGGCSEEEECCSCHHHHHHHHH
T ss_pred cchHHHHHHHHHh-hhcCceEEEecCHHHHHHHHHHC-CCceEEeccccchhhHhhcCchhhcEEEEcccCcHHHHHHHH
Confidence 6999999999986 567999999999877432 23 3688999999999988887 56789999875542 234
Q ss_pred hhhhcCCCeEEEe
Q 028525 80 AGSLKGVQHVILL 92 (208)
Q Consensus 80 a~~~~gv~~~v~~ 92 (208)
.|++.|+++.|-.
T Consensus 320 lAk~~gv~kvIa~ 332 (461)
T 4g65_A 320 LAKRMGAKKVMVL 332 (461)
T ss_dssp HHHHTTCSEEEEE
T ss_pred HHHHcCCcccccc
Confidence 5778899987654
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00098 Score=51.21 Aligned_cols=60 Identities=7% Similarity=-0.102 Sum_probs=44.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.+++.|.+.||+|++++|++++.......++... +++.++++++|+||.+.+
T Consensus 7 IG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~~~aDvvi~~vp 66 (287)
T 3pef_A 7 IGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERA-------ATPCEVVESCPVTFAMLA 66 (287)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEEC-------SSHHHHHHHCSEEEECCS
T ss_pred EeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeec-------CCHHHHHhcCCEEEEEcC
Confidence 479999999999999999999999999887554333333321 234456677899998844
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0012 Score=51.03 Aligned_cols=59 Identities=3% Similarity=-0.267 Sum_probs=43.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|..+++.|++.||+|++++|++++.......++.+ . +++.++++ +|+||.+.+
T Consensus 21 IG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~---~~~~~~~~-aDvvi~~vp 79 (296)
T 3qha_A 21 IGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATL----A---DSVADVAA-ADLIHITVL 79 (296)
T ss_dssp ECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEE----C---SSHHHHTT-SSEEEECCS
T ss_pred ECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEE----c---CCHHHHHh-CCEEEEECC
Confidence 36999999999999999999999999988754433333432 1 23445667 899998844
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0014 Score=50.56 Aligned_cols=60 Identities=8% Similarity=-0.018 Sum_probs=43.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.+++.|.+.||+|++++|++++.......++.+ ..+ ..+++.++|+||.+.+
T Consensus 10 iG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~---~~~~~~~~D~vi~~vp 69 (301)
T 3cky_A 10 IGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQA----CEN---NQKVAAASDIIFTSLP 69 (301)
T ss_dssp ECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEE----CSS---HHHHHHHCSEEEECCS
T ss_pred ECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCee----cCC---HHHHHhCCCEEEEECC
Confidence 37999999999999999999999999987754433334432 123 3345567899988754
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00075 Score=51.84 Aligned_cols=60 Identities=7% Similarity=-0.088 Sum_probs=43.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|..+++.|++.||+|++++|++++.......++.+ ..+ ..++++++|+||.+.+
T Consensus 7 iG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~---~~~~~~~advvi~~v~ 66 (287)
T 3pdu_A 7 LGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQ----ASS---PAEVCAACDITIAMLA 66 (287)
T ss_dssp ECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEE----CSC---HHHHHHHCSEEEECCS
T ss_pred EccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCee----cCC---HHHHHHcCCEEEEEcC
Confidence 47999999999999999999999999988754432223332 123 3456677899998844
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0027 Score=49.47 Aligned_cols=65 Identities=9% Similarity=0.054 Sum_probs=50.3
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcC---chhhhhhc---C--CceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKD---KRNAMESF---G--TYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~---~~~~~~~~---~--~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.+|++++..|.+.|. +|+++.|+ .+++.++. . .++.+...++.+.+++.+.+.++|+||+++
T Consensus 161 GaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaT 234 (315)
T 3tnl_A 161 GAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNAT 234 (315)
T ss_dssp CCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECc
Confidence 578999999999999997 89999999 55543221 1 124455567888888888999999999883
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0019 Score=50.08 Aligned_cols=61 Identities=7% Similarity=-0.193 Sum_probs=44.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|..++..|++.||+|++++|++++.......+......|+. ++++++|+||.+.+
T Consensus 13 IG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~------e~~~~aDvvi~~vp 73 (303)
T 3g0o_A 13 VGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAR------EFAGVVDALVILVV 73 (303)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSST------TTTTTCSEEEECCS
T ss_pred ECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHH------HHHhcCCEEEEECC
Confidence 47999999999999999999999999988754433233333223332 35677899888744
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0017 Score=51.80 Aligned_cols=61 Identities=8% Similarity=-0.005 Sum_probs=49.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.+++.|...|++|++++|++++.... .+.. +..|..+.+++.+++.++|+||.+
T Consensus 173 GaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~---~~~~~~~~~~l~~~~~~~DvVi~~ 236 (369)
T 2eez_A 173 GGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGR---VITLTATEANIKKSVQHADLLIGA 236 (369)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTS---EEEEECCHHHHHHHHHHCSEEEEC
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCce---EEEecCCHHHHHHHHhCCCEEEEC
Confidence 469999999999999999999999998764322 2322 456777888899999999999987
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00015 Score=53.07 Aligned_cols=63 Identities=8% Similarity=-0.102 Sum_probs=42.6
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCC-ceEEEE-cCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGT-YVESMA-GDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~-~v~~v~-~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+|.+|+.+++.|++.|++|++++|++++....... +. .+. .|+. .+++.++++++|+||++.+
T Consensus 9 ~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~D~Vi~~~~ 73 (212)
T 1jay_A 9 TGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR-IAGDASIT-GMKNEDAAEACDIAVLTIP 73 (212)
T ss_dssp TSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH-HHSSCCEE-EEEHHHHHHHCSEEEECSC
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-ccccCCCC-hhhHHHHHhcCCEEEEeCC
Confidence 99999999999999999999999987764322110 10 000 1121 1345567788999999844
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0014 Score=51.05 Aligned_cols=60 Identities=5% Similarity=-0.022 Sum_probs=44.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|..+++.|++.||+|++++|++++.......++.. . +++.++++++|+||.+.+
T Consensus 27 IG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~----~---~~~~~~~~~aDvvi~~vp 86 (310)
T 3doj_A 27 LGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASV----C---ESPAEVIKKCKYTIAMLS 86 (310)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEE----C---SSHHHHHHHCSEEEECCS
T ss_pred ECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeE----c---CCHHHHHHhCCEEEEEcC
Confidence 37999999999999999999999999988755443233332 1 233456677899998744
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.002 Score=50.95 Aligned_cols=79 Identities=6% Similarity=-0.126 Sum_probs=46.6
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCchh---hhhhcC--CceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCch----h
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKRN---AMESFG--TYVESMAGDASNKKFLKTALRGVRSIICPSEGFI----S 78 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~---~~~~~~--~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~~----~ 78 (208)
.||++|+.+++.|.++. .+++++.++.+. .....+ .+.. ...+.+.+ + +.++|+||.|++... .
T Consensus 12 AtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~--~~~~~~~~---~-~~~vDvV~~a~g~~~s~~~a 85 (345)
T 2ozp_A 12 ASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRT--NLKFVPPE---K-LEPADILVLALPHGVFAREF 85 (345)
T ss_dssp TTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTC--CCBCBCGG---G-CCCCSEEEECCCTTHHHHTH
T ss_pred CCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcc--cccccchh---H-hcCCCEEEEcCCcHHHHHHH
Confidence 49999999999998775 488888764332 111100 0000 11122322 2 578999999865432 2
Q ss_pred hhhhhcCCCeEEEece
Q 028525 79 NAGSLKGVQHVILLSQ 94 (208)
Q Consensus 79 ~a~~~~gv~~~v~~Ss 94 (208)
..+.++|+ ++|-+|+
T Consensus 86 ~~~~~aG~-~VId~Sa 100 (345)
T 2ozp_A 86 DRYSALAP-VLVDLSA 100 (345)
T ss_dssp HHHHTTCS-EEEECSS
T ss_pred HHHHHCCC-EEEEcCc
Confidence 34456676 4777776
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0044 Score=49.99 Aligned_cols=62 Identities=8% Similarity=0.069 Sum_probs=48.9
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEE
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIIC 71 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~ 71 (208)
+.|.+|+.+++.+.+.|++|++++ ++.............+.+|+.|.+.+.+..+.+|+++.
T Consensus 31 GgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~ 92 (403)
T 3k5i_A 31 GGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTA 92 (403)
T ss_dssp CCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEE
Confidence 689999999999999999999999 54332222222234678999999999999999998875
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0014 Score=51.73 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=46.2
Q ss_pred ccCccHHHHHHHHHhCCC---cEEEEEc-C-chhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----hhh
Q 028525 9 RKKMNFRMVILSLIVKRT---RIKALVK-D-KRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF----ISN 79 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~---~V~~~~R-~-~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~----~~~ 79 (208)
.||++|+.+++.|++++| +++++.. + ..+... +. +.++...|+ |++ .+.++|+||.|.+.. ...
T Consensus 14 AtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~-~~-g~~i~~~~~-~~~----~~~~~DvV~~a~g~~~s~~~a~ 86 (340)
T 2hjs_A 14 ATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG-FA-ESSLRVGDV-DSF----DFSSVGLAFFAAAAEVSRAHAE 86 (340)
T ss_dssp TTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE-ET-TEEEECEEG-GGC----CGGGCSEEEECSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccc-cC-CcceEEecC-CHH----HhcCCCEEEEcCCcHHHHHHHH
Confidence 499999999999997764 4565542 2 212111 11 122222232 222 256899999986643 234
Q ss_pred hhhhcCCCeEEEeceee
Q 028525 80 AGSLKGVQHVILLSQLS 96 (208)
Q Consensus 80 a~~~~gv~~~v~~Ss~~ 96 (208)
.+.++|++ +|.+|+..
T Consensus 87 ~~~~aG~k-vId~Sa~~ 102 (340)
T 2hjs_A 87 RARAAGCS-VIDLSGAL 102 (340)
T ss_dssp HHHHTTCE-EEETTCTT
T ss_pred HHHHCCCE-EEEeCCCC
Confidence 45567885 66777643
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0028 Score=48.70 Aligned_cols=60 Identities=8% Similarity=-0.166 Sum_probs=44.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.+++.|++.|++|++++|++++.......++.+. .+. .++++++|+||.+.+
T Consensus 6 iG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~----~~~---~~~~~~~Dvvi~~vp 65 (296)
T 2gf2_A 6 IGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVV----SSP---ADVAEKADRIITMLP 65 (296)
T ss_dssp ECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEEC----SSH---HHHHHHCSEEEECCS
T ss_pred EeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeec----CCH---HHHHhcCCEEEEeCC
Confidence 469999999999999999999999999877554433344321 233 345667899998843
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00081 Score=51.65 Aligned_cols=58 Identities=3% Similarity=-0.110 Sum_probs=41.3
Q ss_pred cc-CccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RK-KMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~-G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+. |.+|+.+++.|++.||+|++++|++++.......++.. .+ ..++++++|+||.+.+
T Consensus 18 G~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~-----~~---~~~~~~~aDvVi~av~ 76 (286)
T 3c24_A 18 GAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPL-----TD---GDGWIDEADVVVLALP 76 (286)
T ss_dssp TTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCC-----CC---SSGGGGTCSEEEECSC
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCc-----CC---HHHHhcCCCEEEEcCC
Confidence 45 99999999999999999999999887643322122221 22 2346678999998843
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0034 Score=48.08 Aligned_cols=59 Identities=10% Similarity=-0.013 Sum_probs=44.6
Q ss_pred cccCccHHHHHHHHHhCCC---cEEEEEcCchhhhhhcCC-ceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRT---RIKALVKDKRNAMESFGT-YVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~---~V~~~~R~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|.+|+.+++.|++.|+ +|++++|++++....... ++.+. .| ..++++++|+||.+.
T Consensus 9 IG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~----~~---~~~~~~~aDvVilav 71 (280)
T 3tri_A 9 IGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTT----QD---NRQGALNADVVVLAV 71 (280)
T ss_dssp ESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEE----SC---HHHHHSSCSEEEECS
T ss_pred EcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEe----CC---hHHHHhcCCeEEEEe
Confidence 4799999999999999999 999999998875443322 44432 12 345778999999884
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0042 Score=44.73 Aligned_cols=85 Identities=14% Similarity=0.003 Sum_probs=53.1
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHH---HHHHHhc--CCCEEEEcCCCchh----h
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKK---FLKTALR--GVRSIICPSEGFIS----N 79 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~---~l~~~~~--~~d~vi~~~~~~~~----~ 79 (208)
.+|.+|..+++.+...|++|++++|++++.......+...+ .|..+.+ .+.+... ++|++|.+.++... +
T Consensus 47 a~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~ 125 (198)
T 1pqw_A 47 ATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYV-GDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQ 125 (198)
T ss_dssp TTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEE-EETTCSTHHHHHHHHTTTCCEEEEEECCCTHHHHHHHH
T ss_pred CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEE-eeCCcHHHHHHHHHHhCCCCCeEEEECCchHHHHHHHH
Confidence 47899999999999999999999998776432222233322 3665543 3333332 58999987544322 2
Q ss_pred hhhhcCCCeEEEeceee
Q 028525 80 AGSLKGVQHVILLSQLS 96 (208)
Q Consensus 80 a~~~~gv~~~v~~Ss~~ 96 (208)
.++..| ++|.+++..
T Consensus 126 ~l~~~G--~~v~~g~~~ 140 (198)
T 1pqw_A 126 ILAPGG--RFIELGKKD 140 (198)
T ss_dssp TEEEEE--EEEECSCGG
T ss_pred HhccCC--EEEEEcCCC
Confidence 222233 788887654
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0014 Score=44.83 Aligned_cols=61 Identities=7% Similarity=0.007 Sum_probs=43.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC-CceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG-TYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|.+|+.+++.|.+.|++|++++|++++...+.. -++... ...+ +.+++.++|+||.+++
T Consensus 28 G~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~--~~~~---~~~~~~~~Divi~at~ 89 (144)
T 3oj0_A 28 GNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYV--LIND---IDSLIKNNDVIITATS 89 (144)
T ss_dssp CCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEE--ECSC---HHHHHHTCSEEEECSC
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceE--eecC---HHHHhcCCCEEEEeCC
Confidence 69999999999999999999999999877533211 122322 2333 4557789999998843
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0044 Score=47.93 Aligned_cols=61 Identities=7% Similarity=-0.044 Sum_probs=45.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|.+|+.+++.|...|.+|++++|++++.......+++.+. .+++.++++++|+|+.+.+
T Consensus 164 G~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~-----~~~l~~~l~~aDvVi~~~p 224 (300)
T 2rir_A 164 GLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFH-----TDELKEHVKDIDICINTIP 224 (300)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEE-----GGGHHHHSTTCSEEEECCS
T ss_pred cccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEc-----hhhHHHHhhCCCEEEECCC
Confidence 689999999999999999999999998764322112344332 2456778899999998744
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.003 Score=49.16 Aligned_cols=59 Identities=7% Similarity=-0.130 Sum_probs=41.9
Q ss_pred cccCccHHHHHHHHHhCCC-cEEEEEcCc--hhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRT-RIKALVKDK--RNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~-~V~~~~R~~--~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|.+|..+++.|++.|| +|++++|++ ++.......++.. ..+ ..++++++|+||.+.
T Consensus 30 IG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~----~~~---~~e~~~~aDvVi~~v 91 (312)
T 3qsg_A 30 IGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSC----KAS---VAEVAGECDVIFSLV 91 (312)
T ss_dssp ECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEE----CSC---HHHHHHHCSEEEECS
T ss_pred ECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEE----eCC---HHHHHhcCCEEEEec
Confidence 3699999999999999999 999999973 4433222223332 123 345677899999883
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0058 Score=47.59 Aligned_cols=83 Identities=7% Similarity=-0.079 Sum_probs=51.0
Q ss_pred cccCccHHHHHHHHHhCCC--cEEEEEc--Cchhhh----hh------cCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRT--RIKALVK--DKRNAM----ES------FGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~--~V~~~~R--~~~~~~----~~------~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.+|++|++++..|+.+++ ++..+++ +..+.. .+ .+..+++...+ +++.++++++|+||+++
T Consensus 7 GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~al~gaD~Vi~~A 82 (313)
T 1hye_A 7 GASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DENLRIIDESDVVIITS 82 (313)
T ss_dssp TTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGGGGTTCSEEEECC
T ss_pred CCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cchHHHhCCCCEEEECC
Confidence 4579999999999998874 5777777 433221 01 11123333221 12456899999999872
Q ss_pred --C---Cc---------------hhhhhhhcCCCeEEEecee
Q 028525 74 --E---GF---------------ISNAGSLKGVQHVILLSQL 95 (208)
Q Consensus 74 --~---~~---------------~~~a~~~~gv~~~v~~Ss~ 95 (208)
+ +. +.+++++.+ +++++++|-
T Consensus 83 g~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SN 123 (313)
T 1hye_A 83 GVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITN 123 (313)
T ss_dssp SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSS
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecC
Confidence 2 11 234566677 878888764
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0045 Score=52.16 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=55.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCC-ceEEEEcCCCCHHHHHHH-hcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGT-YVESMAGDASNKKFLKTA-LRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~ 72 (208)
+-|.+|+.+++.|.+.|++|++++.+++........ ++.++.+|.++++.+.++ ++.++.+|.+
T Consensus 134 G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~t 199 (565)
T 4gx0_A 134 GIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIAN 199 (565)
T ss_dssp SCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEEC
T ss_pred CCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEEe
Confidence 589999999999999999999999998876555445 799999999999999887 4678998874
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0056 Score=47.18 Aligned_cols=61 Identities=11% Similarity=-0.051 Sum_probs=45.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|.+|+.+++.|...|.+|++++|++++.......+++++ +.+++.++++++|+|+.+.+
T Consensus 162 G~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-----~~~~l~~~l~~aDvVi~~~p 222 (293)
T 3d4o_A 162 GLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPF-----HISKAAQELRDVDVCINTIP 222 (293)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEE-----EGGGHHHHTTTCSEEEECCS
T ss_pred eeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeec-----ChhhHHHHhcCCCEEEECCC
Confidence 69999999999999999999999998866432211234433 23456778899999998744
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0026 Score=49.57 Aligned_cols=60 Identities=7% Similarity=-0.150 Sum_probs=42.4
Q ss_pred ccCccHHHHHHHHHhCCC--cEEEEEcCchhhhhhcCCceE-EEEcCCCCHHHHHH-HhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRT--RIKALVKDKRNAMESFGTYVE-SMAGDASNKKFLKT-ALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~--~V~~~~R~~~~~~~~~~~~v~-~v~~Dl~d~~~l~~-~~~~~d~vi~~~~ 74 (208)
+.|.+|..+++.|.+.|+ +|++++|++++.......++. ....|+ .+ +++++|+||.|.+
T Consensus 40 G~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~------~~~~~~~aDvVilavp 103 (314)
T 3ggo_A 40 GVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSI------AKVEDFSPDFVMLSSP 103 (314)
T ss_dssp SCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCT------TGGGGGCCSEEEECSC
T ss_pred eeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCH------HHHhhccCCEEEEeCC
Confidence 699999999999999999 999999998764332222221 111222 24 5778999998844
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0046 Score=51.04 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=43.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC----CceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG----TYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~----~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..|.+.||+|.+++|++++...... .++.. ..+.+++.+.++.+|+||.+.+
T Consensus 11 IG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVilavp 77 (474)
T 2iz1_A 11 VGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVF----TKTLEEFVGSLEKPRRIMLMVQ 77 (474)
T ss_dssp ECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEE----CSSHHHHHHTBCSSCEEEECCC
T ss_pred EeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEE----eCCHHHHHhhccCCCEEEEEcc
Confidence 379999999999999999999999999876433221 13321 2344443333345899998833
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0052 Score=48.40 Aligned_cols=80 Identities=13% Similarity=0.045 Sum_probs=47.1
Q ss_pred cccCccHHHHHHHHHhCC---CcEEEEEcC--chhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----hh
Q 028525 8 KRKKMNFRMVILSLIVKR---TRIKALVKD--KRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF----IS 78 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g---~~V~~~~R~--~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~----~~ 78 (208)
+.||++|+.+++.|++++ .+++++... ..+.....+..+.+ .+++ ++ .+.++|+||.|++.. ..
T Consensus 10 GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~--~~~~-~~----~~~~vDvVf~a~g~~~s~~~a 82 (336)
T 2r00_A 10 GATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRV--QNVE-EF----DWSQVHIALFSAGGELSAKWA 82 (336)
T ss_dssp TTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEE--EEGG-GC----CGGGCSEEEECSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEE--ecCC-hH----HhcCCCEEEECCCchHHHHHH
Confidence 349999999999999873 567777632 21211111112222 2322 22 346899999986643 23
Q ss_pred hhhhhcCCCeEEEecee
Q 028525 79 NAGSLKGVQHVILLSQL 95 (208)
Q Consensus 79 ~a~~~~gv~~~v~~Ss~ 95 (208)
..+.++|+ ++|-.|+.
T Consensus 83 ~~~~~~G~-~vId~s~~ 98 (336)
T 2r00_A 83 PIAAEAGV-VVIDNTSH 98 (336)
T ss_dssp HHHHHTTC-EEEECSST
T ss_pred HHHHHcCC-EEEEcCCc
Confidence 34556777 46666654
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.011 Score=43.76 Aligned_cols=58 Identities=7% Similarity=-0.064 Sum_probs=43.1
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHh----cCCCEEEEc
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTAL----RGVRSIICP 72 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~----~~~d~vi~~ 72 (208)
+|.+|.+++++|+++|++|+++.|+.+ .. .+.+++ ..|+++.+++.+++ .++|++|++
T Consensus 33 Sg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~--~~~g~~--~~dv~~~~~~~~~v~~~~~~~Dili~~ 94 (226)
T 1u7z_A 33 SGKMGFAIAAAAARRGANVTLVSGPVS-LP--TPPFVK--RVDVMTALEMEAAVNASVQQQNIFIGC 94 (226)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECSCC-CC--CCTTEE--EEECCSHHHHHHHHHHHGGGCSEEEEC
T ss_pred ccHHHHHHHHHHHHCCCEEEEEECCcc-cc--cCCCCe--EEccCcHHHHHHHHHHhcCCCCEEEEC
Confidence 689999999999999999999988652 11 122444 45788866665554 568999987
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.012 Score=47.04 Aligned_cols=61 Identities=11% Similarity=-0.012 Sum_probs=49.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEE
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIIC 71 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~ 71 (208)
+.|.+|+.+++.+.+.|++|++++.++........+ ..+..|++|.+.+.+..+.+|+|..
T Consensus 19 G~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad--~~~~~~~~d~~~l~~~~~~~dvi~~ 79 (377)
T 3orq_A 19 GGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAH--EFIQAKYDDEKALNQLGQKCDVITY 79 (377)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSS--EEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCC--EEEECCCCCHHHHHHHHHhCCccee
Confidence 689999999999999999999998765432212222 4667999999999999999998876
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0017 Score=53.02 Aligned_cols=66 Identities=8% Similarity=-0.146 Sum_probs=44.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEE-------------EcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESM-------------AGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v-------------~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|.+|..++..|.+.||+|++++|++++..........+. .+.+.-..++.++++++|+||.|.
T Consensus 6 IG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvviiaV 84 (436)
T 1mv8_A 6 FGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICV 84 (436)
T ss_dssp ECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEEECC
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEEEEEc
Confidence 479999999999999999999999999887544322111100 011111123345678899999883
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.00084 Score=49.56 Aligned_cols=60 Identities=3% Similarity=-0.182 Sum_probs=42.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEE-EEcCchhhhhhcCC-ceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKA-LVKDKRNAMESFGT-YVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~-~~R~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|..+++.|.+.|++|++ .+|++++....... ++.... ++. ++++++|+||.+.+
T Consensus 29 IG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~---~~~----~~~~~aDvVilavp 90 (220)
T 4huj_A 29 IGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKA---VEL----KDALQADVVILAVP 90 (220)
T ss_dssp EECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEE---CCH----HHHTTSSEEEEESC
T ss_pred ECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCccc---ChH----HHHhcCCEEEEeCC
Confidence 36999999999999999999999 88888765432111 222221 222 34678999998844
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0053 Score=48.80 Aligned_cols=80 Identities=10% Similarity=0.051 Sum_probs=47.4
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCchh---hhhh---cCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----h
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKRN---AMES---FGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF----I 77 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~---~~~~---~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~----~ 77 (208)
.+|++|+.+++.|.++. .+++++.+..+. .... +...+ ..|+.-.+ .+.+.++|+||.|+|.. .
T Consensus 24 AtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v---~~dl~~~~--~~~~~~vDvVf~atp~~~s~~~ 98 (359)
T 1xyg_A 24 ASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQK---LPTLVSVK--DADFSTVDAVFCCLPHGTTQEI 98 (359)
T ss_dssp CSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSC---CCCCBCGG--GCCGGGCSEEEECCCTTTHHHH
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcc---cccceecc--hhHhcCCCEEEEcCCchhHHHH
Confidence 39999999999999876 488888765322 1111 11111 13333222 33556899999985532 2
Q ss_pred hhhhhhcCCCeEEEecee
Q 028525 78 SNAGSLKGVQHVILLSQL 95 (208)
Q Consensus 78 ~~a~~~~gv~~~v~~Ss~ 95 (208)
...+ ++|+ ++|-.|+.
T Consensus 99 a~~~-~aG~-~VId~sa~ 114 (359)
T 1xyg_A 99 IKEL-PTAL-KIVDLSAD 114 (359)
T ss_dssp HHTS-CTTC-EEEECSST
T ss_pred HHHH-hCCC-EEEECCcc
Confidence 3334 5666 56677763
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0087 Score=46.19 Aligned_cols=29 Identities=10% Similarity=-0.133 Sum_probs=26.3
Q ss_pred cc-cCccHHHHHHHHHhCCCcEEEEEcCch
Q 028525 8 KR-KKMNFRMVILSLIVKRTRIKALVKDKR 36 (208)
Q Consensus 8 ~~-~G~iG~~l~~~Ll~~g~~V~~~~R~~~ 36 (208)
.+ .|.+|..++..|.+.|++|++++|++.
T Consensus 27 IGg~G~mG~~la~~l~~~G~~V~~~~~~~~ 56 (298)
T 2pv7_A 27 VGGYGKLGGLFARYLRASGYPISILDREDW 56 (298)
T ss_dssp ETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred EcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence 36 999999999999999999999998764
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0031 Score=47.30 Aligned_cols=59 Identities=8% Similarity=-0.025 Sum_probs=42.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchh--------------hhhhcCC-ceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRN--------------AMESFGT-YVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~--------------~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.+|..+++.|++.||+|++++|++++ ....... +.. ...+..++++++|+||.+.
T Consensus 26 G~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~e~~~~aDvVilav 98 (245)
T 3dtt_A 26 GTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHV-------HLAAFADVAAGAELVVNAT 98 (245)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTC-------EEEEHHHHHHHCSEEEECS
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCce-------eccCHHHHHhcCCEEEEcc
Confidence 69999999999999999999999999876 2221110 111 1123455777899999884
Q ss_pred C
Q 028525 74 E 74 (208)
Q Consensus 74 ~ 74 (208)
+
T Consensus 99 p 99 (245)
T 3dtt_A 99 E 99 (245)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0052 Score=48.46 Aligned_cols=63 Identities=8% Similarity=0.002 Sum_probs=45.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHH-HHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKK-FLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~-~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|..+++.|.+.|++|++++|++++.......++.. ..+.+ .+..+.+++|+||++.+
T Consensus 14 IG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~----~~~~~e~~~~a~~~aDlVilavP 77 (341)
T 3ktd_A 14 LGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDV----SADLEATLQRAAAEDALIVLAVP 77 (341)
T ss_dssp ECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCE----ESCHHHHHHHHHHTTCEEEECSC
T ss_pred EeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCee----eCCHHHHHHhcccCCCEEEEeCC
Confidence 36999999999999999999999999987654332234432 13433 34445667899998844
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0041 Score=47.85 Aligned_cols=60 Identities=12% Similarity=0.005 Sum_probs=43.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..|.+.|++|++++|++++.......++.. ..+. .++++++|+||.+.+
T Consensus 11 iG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~---~~~~~~~D~vi~~v~ 70 (299)
T 1vpd_A 11 IGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAET----ASTA---KAIAEQCDVIITMLP 70 (299)
T ss_dssp ECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE----CSSH---HHHHHHCSEEEECCS
T ss_pred ECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCee----cCCH---HHHHhCCCEEEEECC
Confidence 46999999999999999999999999987654332223332 2233 345667899998854
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.002 Score=50.38 Aligned_cols=67 Identities=6% Similarity=-0.070 Sum_probs=45.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEc--CchhhhhhcCCce------EEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVK--DKRNAMESFGTYV------ESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R--~~~~~~~~~~~~v------~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..|.+.||+|++++| ++++.......+. +.......+++++.++++++|+||.+.+
T Consensus 6 iG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (335)
T 1txg_A 6 LGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (335)
T ss_dssp ESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred ECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence 46899999999999999999999999 7766443322221 1000012223355667889999998844
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.029 Score=42.09 Aligned_cols=85 Identities=6% Similarity=-0.070 Sum_probs=57.4
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCc-------------------hhhhh------hcCC--ceEEEEcCCCCHHHHH
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDK-------------------RNAME------SFGT--YVESMAGDASNKKFLK 60 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~-------------------~~~~~------~~~~--~v~~v~~Dl~d~~~l~ 60 (208)
+.|.+|+++++.|...|. ++++++++. .|... ...+ .++.+..+++ .+.+.
T Consensus 38 G~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~-~~~~~ 116 (249)
T 1jw9_B 38 GLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLD-DAELA 116 (249)
T ss_dssp CCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCC-HHHHH
T ss_pred eeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccCC-HhHHH
Confidence 589999999999999995 899998876 33211 1122 3455555565 45677
Q ss_pred HHhcCCCEEEEcCCCc-----hhhhhhhcCCCeEEEecee
Q 028525 61 TALRGVRSIICPSEGF-----ISNAGSLKGVQHVILLSQL 95 (208)
Q Consensus 61 ~~~~~~d~vi~~~~~~-----~~~a~~~~gv~~~v~~Ss~ 95 (208)
+.+.++|+||.+.+.. +.+++.+.+++ +|..+..
T Consensus 117 ~~~~~~DvVi~~~d~~~~~~~l~~~~~~~~~p-~i~~~~~ 155 (249)
T 1jw9_B 117 ALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVP-LVSGAAI 155 (249)
T ss_dssp HHHHTSSEEEECCSSHHHHHHHHHHHHHHTCC-EEEEEEE
T ss_pred HHHhCCCEEEEeCCCHHHHHHHHHHHHHcCCC-EEEeeec
Confidence 7889999999886543 33456666764 5555443
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0031 Score=52.13 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=44.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCC---ceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGT---YVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~---~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|.+|..++..|++.||+|++++|++++....... +..+.. ..+++++.+.++++|+||++
T Consensus 10 IGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~--~~s~~e~v~~l~~aDvVil~ 75 (484)
T 4gwg_A 10 IGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVG--AQSLKEMVSKLKKPRRIILL 75 (484)
T ss_dssp ECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEE--CSSHHHHHHTBCSSCEEEEC
T ss_pred EChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceec--cCCHHHHHhhccCCCEEEEe
Confidence 4799999999999999999999999998875443211 111111 23555555555678988877
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0072 Score=49.93 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=42.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC----CceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG----TYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~----~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|.+|+.++..|++.||+|++++|++++...... .++.. ..+++++.+.++.+|+||++.
T Consensus 21 IGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVil~V 86 (480)
T 2zyd_A 21 VGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVP----YYTVKEFVESLETPRRILLMV 86 (480)
T ss_dssp ECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEE----CSSHHHHHHTBCSSCEEEECS
T ss_pred EccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEE----eCCHHHHHhCCCCCCEEEEEC
Confidence 379999999999999999999999999887543321 13322 234444333333489999883
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0044 Score=50.82 Aligned_cols=66 Identities=8% Similarity=-0.030 Sum_probs=44.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEE-------------EcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESM-------------AGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v-------------~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|.+|..++..|.+.||+|++++|++++...+......+. .+.+.-..++.++++++|+||.|.
T Consensus 8 IG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvViiaV 86 (450)
T 3gg2_A 8 VGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADIIFIAV 86 (450)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEEEECC
T ss_pred ECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEEEEEc
Confidence 479999999999999999999999999887443221100000 011111123456788999999883
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0076 Score=46.11 Aligned_cols=59 Identities=8% Similarity=-0.054 Sum_probs=46.0
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.+|+.++..|.+.|. +|+++.|+.++..++.. .+..+ ..+++.+++.++|+||+++
T Consensus 124 GaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~-~~~~~-----~~~~~~~~~~~aDiVInaT 183 (277)
T 3don_A 124 GAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSL-NINKI-----NLSHAESHLDEFDIIINTT 183 (277)
T ss_dssp CCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS-CCEEE-----CHHHHHHTGGGCSEEEECC
T ss_pred CCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-hcccc-----cHhhHHHHhcCCCEEEECc
Confidence 689999999999999998 89999999988654432 23322 3456677788999999883
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0044 Score=48.08 Aligned_cols=80 Identities=5% Similarity=0.025 Sum_probs=50.3
Q ss_pred ccCccHHHHHHHHHhCCC--cEEEEEc--Cchhhhh----h-----cCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC--
Q 028525 9 RKKMNFRMVILSLIVKRT--RIKALVK--DKRNAME----S-----FGTYVESMAGDASNKKFLKTALRGVRSIICPS-- 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~--~V~~~~R--~~~~~~~----~-----~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~-- 73 (208)
++|++|+.++..|+.+++ ++..+++ +..+... + ....+++.. + + .++++++|+||+++
T Consensus 8 AaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~aDvVi~~ag~ 80 (303)
T 1o6z_A 8 AAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--G----YEDTAGSDVVVITAGI 80 (303)
T ss_dssp TTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--C----GGGGTTCSEEEECCCC
T ss_pred CCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--C----HHHhCCCCEEEEcCCC
Confidence 499999999999998875 5777777 5433211 0 112334433 2 2 35689999999872
Q ss_pred C---Cc---------------hhhhhhhcCCCeEEEecee
Q 028525 74 E---GF---------------ISNAGSLKGVQHVILLSQL 95 (208)
Q Consensus 74 ~---~~---------------~~~a~~~~gv~~~v~~Ss~ 95 (208)
+ +. +.+++++.+.+.+++++|-
T Consensus 81 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN 120 (303)
T 1o6z_A 81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120 (303)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 2 11 2234556677778887764
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.017 Score=43.59 Aligned_cols=60 Identities=15% Similarity=0.056 Sum_probs=45.7
Q ss_pred cccCccHHHHHHHHHhCCC-cEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRT-RIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|..|++++..|++.|. +|+++.|+.++..++.. .+..+ + .+++.+++.++|+||+++
T Consensus 114 iGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~-~~~~~--~---~~~~~~~~~~aDiVInat 174 (253)
T 3u62_A 114 VGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDF-PVKIF--S---LDQLDEVVKKAKSLFNTT 174 (253)
T ss_dssp ECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCS-SCEEE--E---GGGHHHHHHTCSEEEECS
T ss_pred ECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-HcccC--C---HHHHHhhhcCCCEEEECC
Confidence 4689999999999999997 89999999988665432 23322 2 244567788999999883
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0049 Score=48.17 Aligned_cols=60 Identities=8% Similarity=-0.053 Sum_probs=42.1
Q ss_pred cccCccHHHHHHHHHhCC----CcEEEEEcCch--hhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKR----TRIKALVKDKR--NAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g----~~V~~~~R~~~--~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|..++..|++.| |+|++++|+++ +.......++.+. .+. .++++++|+||.+.+
T Consensus 28 IG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~----~~~---~e~~~~aDvVilav~ 93 (322)
T 2izz_A 28 IGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLT----PHN---KETVQHSDVLFLAVK 93 (322)
T ss_dssp ESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEE----SCH---HHHHHHCSEEEECSC
T ss_pred ECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEe----CCh---HHHhccCCEEEEEeC
Confidence 369999999999999999 89999999875 4332221234432 122 345667999998843
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0035 Score=51.25 Aligned_cols=65 Identities=9% Similarity=-0.047 Sum_probs=45.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEE-------------cCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMA-------------GDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~-------------~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|.+|..++..|.+.||+|++++|++++...+......+.. +.+.=.+++.++++++|+||.|
T Consensus 14 IGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvvii~ 91 (446)
T 4a7p_A 14 IGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAVFIA 91 (446)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEEEEC
T ss_pred EcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEEEEE
Confidence 4799999999999999999999999999886544321111000 1111112345678899999988
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.007 Score=47.00 Aligned_cols=60 Identities=2% Similarity=-0.129 Sum_probs=43.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..|.+.|++|++++|++++.......++.+ ..+ ..+++.++|+||.+.+
T Consensus 36 IG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~---~~~~~~~~DvVi~av~ 95 (316)
T 2uyy_A 36 LGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARL----GRT---PAEVVSTCDITFACVS 95 (316)
T ss_dssp ECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEE----CSC---HHHHHHHCSEEEECCS
T ss_pred EcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEE----cCC---HHHHHhcCCEEEEeCC
Confidence 36999999999999999999999999987754332223332 123 3345677999998854
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.019 Score=44.80 Aligned_cols=55 Identities=20% Similarity=0.122 Sum_probs=43.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|++|++++|++.+.. ++....+ ..++.++++.+|+|+++
T Consensus 146 G~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~-----~~~~~~~----~~~l~ell~~aDiV~l~ 200 (315)
T 3pp8_A 146 GAGVLGAKVAESLQAWGFPLRCWSRSRKSWP-----GVESYVG----REELRAFLNQTRVLINL 200 (315)
T ss_dssp CCSHHHHHHHHHHHTTTCCEEEEESSCCCCT-----TCEEEES----HHHHHHHHHTCSEEEEC
T ss_pred eeCHHHHHHHHHHHHCCCEEEEEcCCchhhh-----hhhhhcc----cCCHHHHHhhCCEEEEe
Confidence 6999999999999999999999999876432 2332222 36788899999999977
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0024 Score=52.74 Aligned_cols=72 Identities=10% Similarity=-0.142 Sum_probs=46.7
Q ss_pred chhhh-ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcC-------------CCCHHHHHHHhcCCC
Q 028525 2 GPMKK-MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGD-------------ASNKKFLKTALRGVR 67 (208)
Q Consensus 2 ~~~~~-~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~D-------------l~d~~~l~~~~~~~d 67 (208)
|.|+. ..+.|.+|..++..|.+.||+|++++|++++...+......+..-+ +.-..++.++++++|
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aD 86 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGD 86 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCS
T ss_pred CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCC
Confidence 45554 3579999999999999999999999999887544332211110000 110112335677899
Q ss_pred EEEEcC
Q 028525 68 SIICPS 73 (208)
Q Consensus 68 ~vi~~~ 73 (208)
+||.|.
T Consensus 87 vviiaV 92 (478)
T 2y0c_A 87 VQFIAV 92 (478)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 999883
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0056 Score=46.14 Aligned_cols=54 Identities=13% Similarity=0.074 Sum_probs=39.5
Q ss_pred cccCccHHHHHHHHHhCC----CcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKR----TRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g----~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..|++.| |+|++++|++++ .++.+ ..+. .++++++|+||.+.+
T Consensus 10 iG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~----~~~~---~~~~~~~D~vi~~v~ 67 (262)
T 2rcy_A 10 MGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNY----MSSN---EELARHCDIIVCAVK 67 (262)
T ss_dssp ECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEE----CSCH---HHHHHHCSEEEECSC
T ss_pred ECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEE----eCCH---HHHHhcCCEEEEEeC
Confidence 479999999999999999 799999998765 12332 1232 345667899998733
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0086 Score=47.81 Aligned_cols=64 Identities=6% Similarity=-0.073 Sum_probs=47.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCC------------------CCHHHHHHHhcCCCEEE
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDA------------------SNKKFLKTALRGVRSII 70 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl------------------~d~~~l~~~~~~~d~vi 70 (208)
+.|.+|..+++.|...|.+|++++|++.+......-+.+++..+. .+.+.+.++++++|+||
T Consensus 191 G~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI 270 (381)
T 3p2y_A 191 GVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITKFDIVI 270 (381)
T ss_dssp SCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHTTCSEEE
T ss_pred CchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhcCCEEE
Confidence 589999999999999999999999998774433222345443221 12467888999999999
Q ss_pred Ec
Q 028525 71 CP 72 (208)
Q Consensus 71 ~~ 72 (208)
.+
T Consensus 271 ~t 272 (381)
T 3p2y_A 271 TT 272 (381)
T ss_dssp EC
T ss_pred EC
Confidence 76
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.014 Score=45.08 Aligned_cols=61 Identities=16% Similarity=0.010 Sum_probs=44.7
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCchhhhhh---cCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDKRNAMES---FGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.+|+.++..|++.|. +|+++.|+.++..++ .+.... +..+.+++.+++.++|+||+++
T Consensus 148 GaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~----~~~~~~~~~~~~~~aDivIn~t 212 (297)
T 2egg_A 148 GAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS----AYFSLAEAETRLAEYDIIINTT 212 (297)
T ss_dssp CCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSC----CEECHHHHHHTGGGCSEEEECS
T ss_pred CcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccC----ceeeHHHHHhhhccCCEEEECC
Confidence 689999999999999997 999999998775432 221110 1223456777888999999883
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.003 Score=52.03 Aligned_cols=65 Identities=3% Similarity=-0.108 Sum_probs=42.7
Q ss_pred cccCccHHHHHHHHHhC--CCcEEEEEcCchhhhhhcCCceEEEE------------cCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVK--RTRIKALVKDKRNAMESFGTYVESMA------------GDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~--g~~V~~~~R~~~~~~~~~~~~v~~v~------------~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|.+|..++..|++. ||+|++++|++++...+......+.. ..+.-..++.++++++|+||.|
T Consensus 11 IG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDvViia 89 (467)
T 2q3e_A 11 IGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFIS 89 (467)
T ss_dssp ECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSEEEEC
T ss_pred ECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCEEEEE
Confidence 47999999999999998 89999999998875443211111000 0111012234567789999988
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0032 Score=52.06 Aligned_cols=65 Identities=6% Similarity=-0.121 Sum_probs=43.0
Q ss_pred cccCccHHHHHHHHHhC--CCcEEEEEcCchhhhhhcCCceEEEEcC------------CCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVK--RTRIKALVKDKRNAMESFGTYVESMAGD------------ASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~--g~~V~~~~R~~~~~~~~~~~~v~~v~~D------------l~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|.+|..++..|.+. ||+|++++|++++...+......+..-+ +.-.+++.++++++|+||.|
T Consensus 15 IG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDvvii~ 93 (481)
T 2o3j_A 15 VGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADLIFIS 93 (481)
T ss_dssp ECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSEEEEC
T ss_pred ECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCEEEEe
Confidence 37999999999999998 7999999999887654432111111111 10011233567789999988
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.029 Score=38.96 Aligned_cols=67 Identities=7% Similarity=-0.055 Sum_probs=48.9
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhh------h---hhcCCceEEEEcCCCCH--HHHHHHhc------CCCEEEE
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNA------M---ESFGTYVESMAGDASNK--KFLKTALR------GVRSIIC 71 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~------~---~~~~~~v~~v~~Dl~d~--~~l~~~~~------~~d~vi~ 71 (208)
.+|.++.+.++.|.+.|++|++..|+.... . +..+..+..+.+|++++ +++.++++ |-|++|+
T Consensus 24 ~s~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dVLVn 103 (157)
T 3gxh_A 24 SSGLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVH 103 (157)
T ss_dssp EEBCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCEEEE
T ss_pred EcCCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 488999999999999999999888764321 1 11233456678899998 88777652 3399999
Q ss_pred cCCC
Q 028525 72 PSEG 75 (208)
Q Consensus 72 ~~~~ 75 (208)
|.++
T Consensus 104 nAgg 107 (157)
T 3gxh_A 104 CLAN 107 (157)
T ss_dssp CSBS
T ss_pred CCCC
Confidence 8554
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.018 Score=47.53 Aligned_cols=63 Identities=16% Similarity=0.052 Sum_probs=45.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC-----CceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG-----TYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~-----~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..|.+.||+|.+++|++++...... .++.. ..+.+++.+.++++|+||.+.+
T Consensus 8 IG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~----~~~~~e~v~~l~~aDvVilaVp 75 (482)
T 2pgd_A 8 IGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLG----AHSLEEMVSKLKKPRRIILLVK 75 (482)
T ss_dssp ECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEE----CSSHHHHHHHBCSSCEEEECSC
T ss_pred EChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEE----eCCHHHHHhhccCCCEEEEeCC
Confidence 479999999999999999999999999887543321 23321 2355554444568999998843
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0098 Score=45.54 Aligned_cols=61 Identities=10% Similarity=-0.020 Sum_probs=41.6
Q ss_pred cccCccHHHHHHHHHhC--CCcEEEEEcCchhhhhhcCCceE-EEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVK--RTRIKALVKDKRNAMESFGTYVE-SMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~--g~~V~~~~R~~~~~~~~~~~~v~-~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..|.+. +++|++++|++++.......++. ....|+. ++++++|+||.+.+
T Consensus 12 IG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~------~~~~~aDvVilavp 75 (290)
T 3b1f_A 12 AGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFK------VFAALADVIILAVP 75 (290)
T ss_dssp ECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTT------TTGGGCSEEEECSC
T ss_pred EeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHH------HhhcCCCEEEEcCC
Confidence 47999999999999987 68999999987764332212221 1222332 35678999998854
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0052 Score=46.27 Aligned_cols=60 Identities=10% Similarity=-0.064 Sum_probs=43.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCC-ceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGT-YVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.+++.|.+.|++|.+++|++++....... ++.+ ..+ +.++++++|+||.+.+
T Consensus 9 iG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~----~~~---~~~~~~~~D~Vi~~v~ 69 (259)
T 2ahr_A 9 IGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPY----AMS---HQDLIDQVDLVILGIK 69 (259)
T ss_dssp ECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCB----CSS---HHHHHHTCSEEEECSC
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEe----eCC---HHHHHhcCCEEEEEeC
Confidence 4799999999999999999999999998765432211 2221 223 3456678999998854
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.011 Score=46.95 Aligned_cols=79 Identities=9% Similarity=-0.041 Sum_probs=45.7
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCchh----hhhhcCC-----------ceEEEEcCCCCHHHHHHHhc-CCCEEEE
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKRN----AMESFGT-----------YVESMAGDASNKKFLKTALR-GVRSIIC 71 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~----~~~~~~~-----------~v~~v~~Dl~d~~~l~~~~~-~~d~vi~ 71 (208)
.||++|+.+++.|.++. .+|+++.|+.+. .....+. .+.+... |+++ .++ ++|+||.
T Consensus 16 AtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~DvV~~ 89 (354)
T 1ys4_A 16 ATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPT---DPKH---EEFEDVDIVFS 89 (354)
T ss_dssp TTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEES---CTTS---GGGTTCCEEEE
T ss_pred cCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeC---CHHH---HhcCCCCEEEE
Confidence 49999999999998764 688888764322 1111111 1111111 2222 335 8999999
Q ss_pred cCCCc----hhhhhhhcCCCeEEEece
Q 028525 72 PSEGF----ISNAGSLKGVQHVILLSQ 94 (208)
Q Consensus 72 ~~~~~----~~~a~~~~gv~~~v~~Ss 94 (208)
|++.. ....+.++|++ +|-.|+
T Consensus 90 atp~~~~~~~a~~~~~aG~~-VId~s~ 115 (354)
T 1ys4_A 90 ALPSDLAKKFEPEFAKEGKL-IFSNAS 115 (354)
T ss_dssp CCCHHHHHHHHHHHHHTTCE-EEECCS
T ss_pred CCCchHHHHHHHHHHHCCCE-EEECCc
Confidence 96643 23344556764 555554
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.011 Score=46.67 Aligned_cols=28 Identities=7% Similarity=-0.128 Sum_probs=26.3
Q ss_pred ccCccHHHHHHHHHhCC-------CcEEEEEcCch
Q 028525 9 RKKMNFRMVILSLIVKR-------TRIKALVKDKR 36 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-------~~V~~~~R~~~ 36 (208)
+.|.+|..++..|.+.| |+|++++|+++
T Consensus 15 G~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~ 49 (354)
T 1x0v_A 15 GSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED 49 (354)
T ss_dssp CCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred CCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence 69999999999999999 99999999876
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.019 Score=46.26 Aligned_cols=64 Identities=8% Similarity=-0.079 Sum_probs=46.9
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcC----------------CCC------HHHHHHHhcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGD----------------ASN------KKFLKTALRGV 66 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~D----------------l~d------~~~l~~~~~~~ 66 (208)
+.|.+|..+++.|...|.+|++++|++.+.......+.+++..+ +++ .+.+.++++++
T Consensus 197 G~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~a 276 (405)
T 4dio_A 197 GAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQ 276 (405)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHHHHhcCC
Confidence 69999999999999999999999999876433222233443322 222 35888999999
Q ss_pred CEEEEc
Q 028525 67 RSIICP 72 (208)
Q Consensus 67 d~vi~~ 72 (208)
|+||.+
T Consensus 277 DVVI~t 282 (405)
T 4dio_A 277 DIVITT 282 (405)
T ss_dssp SEEEEC
T ss_pred CEEEEC
Confidence 999976
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0061 Score=48.44 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=45.7
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.+++.|...|.+|++++|++++.... ....+..+ ..+.+++.+.+.++|+||.+
T Consensus 174 GaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~DvVI~~ 237 (361)
T 1pjc_A 174 GGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELL---YSNSAEIETAVAEADLLIGA 237 (361)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEE---ECCHHHHHHHHHTCSEEEEC
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEee---eCCHHHHHHHHcCCCEEEEC
Confidence 579999999999999999999999998764332 12223222 23456777888899999987
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.016 Score=48.06 Aligned_cols=62 Identities=10% Similarity=0.015 Sum_probs=43.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC-----CceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG-----TYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~-----~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|.+|+.++..|+++||+|++++|++++...... .++.. ..+++++.+.++.+|+||.+.
T Consensus 16 IGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~----~~s~~e~v~~l~~aDvVil~V 82 (497)
T 2p4q_A 16 IGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIG----ATSIEDFISKLKRPRKVMLLV 82 (497)
T ss_dssp ECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEEC----CSSHHHHHHTSCSSCEEEECC
T ss_pred EeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEE----eCCHHHHHhcCCCCCEEEEEc
Confidence 479999999999999999999999999887543322 23321 234444333334489999883
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.025 Score=44.01 Aligned_cols=65 Identities=11% Similarity=0.021 Sum_probs=47.4
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcC---chhhhhhc---C--CceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKD---KRNAMESF---G--TYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~---~~~~~~~~---~--~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.+|++++..|.+.|. +|+++.|+ .+++.++. . .+..+...++.+.+.+.+.+.++|+||+++
T Consensus 155 GAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINaT 228 (312)
T 3t4e_A 155 GAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGT 228 (312)
T ss_dssp CCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEECS
T ss_pred CcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEEECC
Confidence 589999999999999997 89999999 55543221 1 123444557777655566788899999883
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.016 Score=45.74 Aligned_cols=56 Identities=7% Similarity=-0.171 Sum_probs=41.9
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.||+.+++.|..-|.+|++++|++.+..... ++.++ +++.++++.+|+|+++.
T Consensus 180 GlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g~~~~-------~~l~ell~~sDvV~l~~ 235 (345)
T 4g2n_A 180 GMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--GAIYH-------DTLDSLLGASDIFLIAA 235 (345)
T ss_dssp SCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--TCEEC-------SSHHHHHHTCSEEEECS
T ss_pred EeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--CCeEe-------CCHHHHHhhCCEEEEec
Confidence 6999999999999999999999999864432221 33322 34567888999999773
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0088 Score=47.33 Aligned_cols=57 Identities=9% Similarity=-0.112 Sum_probs=41.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|++|++++|++.........++..+ +++.++++.+|+|+++
T Consensus 171 G~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~-------~~l~ell~~aDvV~l~ 227 (351)
T 3jtm_A 171 GAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFV-------EDLNEMLPKCDVIVIN 227 (351)
T ss_dssp CCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEEC-------SCHHHHGGGCSEEEEC
T ss_pred EeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEc-------CCHHHHHhcCCEEEEC
Confidence 69999999999999999999999988643221111123321 3456788999999976
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.019 Score=45.04 Aligned_cols=56 Identities=7% Similarity=-0.155 Sum_probs=41.0
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.+++.|...|++|++++|+..+.......++... + +.++++++|+|+.+
T Consensus 162 G~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~---l~e~l~~aDvVi~~ 217 (330)
T 2gcg_A 162 GLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-----S---TPELAAQSDFIVVA 217 (330)
T ss_dssp CCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-----C---HHHHHHHCSEEEEC
T ss_pred CcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-----C---HHHHHhhCCEEEEe
Confidence 69999999999999999999999988754322222233321 2 34567789999977
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.013 Score=46.06 Aligned_cols=84 Identities=11% Similarity=-0.060 Sum_probs=51.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHh----c-CCCEEEEcCCC-ch-hh--
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTAL----R-GVRSIICPSEG-FI-SN-- 79 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~----~-~~d~vi~~~~~-~~-~~-- 79 (208)
.+|.+|..+++.+...|++|++++|++++.......+...+ .|+.+.+++.+.+ . ++|+||.+.+. .. ..
T Consensus 178 a~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~ 256 (347)
T 2hcy_A 178 AAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVF-IDFTKEKDIVGAVLKATDGGAHGVINVSVSEAAIEAST 256 (347)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEE-EETTTCSCHHHHHHHHHTSCEEEEEECSSCHHHHHHHT
T ss_pred CCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceE-EecCccHhHHHHHHHHhCCCCCEEEECCCcHHHHHHHH
Confidence 46899999999999999999999998776422211223322 3666433333333 2 68999988554 22 22
Q ss_pred -hhhhcCCCeEEEecee
Q 028525 80 -AGSLKGVQHVILLSQL 95 (208)
Q Consensus 80 -a~~~~gv~~~v~~Ss~ 95 (208)
.++.. .+++.+++.
T Consensus 257 ~~l~~~--G~iv~~g~~ 271 (347)
T 2hcy_A 257 RYVRAN--GTTVLVGMP 271 (347)
T ss_dssp TSEEEE--EEEEECCCC
T ss_pred HHHhcC--CEEEEEeCC
Confidence 22222 378777653
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0072 Score=45.25 Aligned_cols=59 Identities=10% Similarity=-0.024 Sum_probs=43.0
Q ss_pred cccCccHHHHHHHHHhCCC----cEEEEEcCchhhhhhcC-CceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRT----RIKALVKDKRNAMESFG-TYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~----~V~~~~R~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
.+.|.+|+.+++.|++.|| +|++++|++++...... .++.+ ..+. .++++++|+||.+.
T Consensus 8 IG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~----~~~~---~e~~~~aDvVilav 71 (247)
T 3gt0_A 8 IGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTT----TTDN---NEVAKNADILILSI 71 (247)
T ss_dssp ECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEE----CSCH---HHHHHHCSEEEECS
T ss_pred ECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEE----eCCh---HHHHHhCCEEEEEe
Confidence 4799999999999999998 99999999887543321 13332 2233 34566799999884
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.022 Score=46.19 Aligned_cols=62 Identities=10% Similarity=0.015 Sum_probs=49.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.+++.+.+.|++|++++.++........+ ..+..|+.|.+.+.+..+++|+|+.-
T Consensus 42 G~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad--~~~~~~~~d~~~l~~~a~~~D~V~~~ 103 (419)
T 4e4t_A 42 GGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVAD--RHLRAAYDDEAALAELAGLCEAVSTE 103 (419)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSS--EEECCCTTCHHHHHHHHHHCSEEEEC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCC--EEEECCcCCHHHHHHHHhcCCEEEEc
Confidence 689999999999999999999998665432222222 45678999999999999999999864
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.012 Score=45.04 Aligned_cols=59 Identities=7% Similarity=-0.125 Sum_probs=40.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.+++.|.+.||+|++++ ++++.......++.+ ..+ +.++++++|+||.+.+
T Consensus 9 iG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~----~~~---~~~~~~~~D~vi~~vp 67 (295)
T 1yb4_A 9 IGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVN----VET---ARQVTEFADIIFIMVP 67 (295)
T ss_dssp CCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBC----CSS---HHHHHHTCSEEEECCS
T ss_pred EccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcc----cCC---HHHHHhcCCEEEEECC
Confidence 4799999999999999999999988 766543332223221 122 3455677888888743
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0054 Score=46.31 Aligned_cols=58 Identities=5% Similarity=-0.046 Sum_probs=40.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEc--CchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVK--DKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R--~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..|.+.||+|++.+| +++........++. .+. .+++.++|+||.+.+
T Consensus 6 IG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~------~~~---~~~~~~aDvvi~~v~ 65 (264)
T 1i36_A 6 IGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT------ETS---EEDVYSCPVVISAVT 65 (264)
T ss_dssp ESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE------ECC---HHHHHTSSEEEECSC
T ss_pred EechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc------CCH---HHHHhcCCEEEEECC
Confidence 47999999999999999999999877 33333222111333 222 346678999998844
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.002 Score=49.42 Aligned_cols=31 Identities=3% Similarity=-0.121 Sum_probs=28.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA 38 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~ 38 (208)
.+.|.+|+.++..|++.|++|++++|++++.
T Consensus 10 IGaG~mG~~iA~~la~~G~~V~l~d~~~~~~ 40 (283)
T 4e12_A 10 LGTGVLGSQIAFQTAFHGFAVTAYDINTDAL 40 (283)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSSHHHH
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 3799999999999999999999999998763
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.007 Score=46.22 Aligned_cols=58 Identities=9% Similarity=-0.147 Sum_probs=40.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..|.+ |++|++++|++++.......++... + +.+++.++|+||.+.+
T Consensus 7 iG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~--~------~~~~~~~~D~vi~~v~ 64 (289)
T 2cvz_A 7 IGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEA--V------PLERVAEARVIFTCLP 64 (289)
T ss_dssp ECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEE--C------CGGGGGGCSEEEECCS
T ss_pred EcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCccc--C------HHHHHhCCCEEEEeCC
Confidence 4799999999999999 9999999999876433221123322 1 1235567888888744
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.004 Score=49.45 Aligned_cols=67 Identities=16% Similarity=0.060 Sum_probs=44.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc--C------CceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF--G------TYVESMAGDASNKKFLKTALRGVRSIICPSEG 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~--~------~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~ 75 (208)
.+.|.+|..++..|.+.||+|++++|++++..... . +++.+ ...+.-..++.++++++|+||.+.+.
T Consensus 35 IGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l-~~~i~~t~d~~ea~~~aDvVilaVp~ 109 (356)
T 3k96_A 35 LGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPF-PETLKAYCDLKASLEGVTDILIVVPS 109 (356)
T ss_dssp ECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCC-CTTEEEESCHHHHHTTCCEEEECCCH
T ss_pred ECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCcc-CCCeEEECCHHHHHhcCCEEEECCCH
Confidence 37999999999999999999999999977632221 1 11110 00111012345678899999998553
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.014 Score=45.25 Aligned_cols=55 Identities=9% Similarity=-0.184 Sum_probs=41.0
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|++|++++|++++.. ....+++. .+ +.++++++|+|+++
T Consensus 149 G~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~g~~~-----~~---l~ell~~aDvV~l~ 203 (307)
T 1wwk_A 149 GFGRIGYQVAKIANALGMNILLYDPYPNEER-AKEVNGKF-----VD---LETLLKESDVVTIH 203 (307)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HHHTTCEE-----CC---HHHHHHHCSEEEEC
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCChhh-HhhcCccc-----cC---HHHHHhhCCEEEEe
Confidence 6999999999999999999999999876521 11123432 13 44577789999977
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.025 Score=44.31 Aligned_cols=69 Identities=10% Similarity=-0.033 Sum_probs=43.4
Q ss_pred Cchhhhc-cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEE------cC---CCCHHHHHHHhcCCCEEE
Q 028525 1 MGPMKKM-KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMA------GD---ASNKKFLKTALRGVRSII 70 (208)
Q Consensus 1 ~~~~~~~-~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~------~D---l~d~~~l~~~~~~~d~vi 70 (208)
|.+|+.- .+.|.+|..++..|.+.|++|++++|+ +........++.+.. .. .+|++ .+.++|.||
T Consensus 1 M~~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~D~Vi 75 (335)
T 3ghy_A 1 MSLTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAA----ALGEQDVVI 75 (335)
T ss_dssp -CCCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHH----HHCCCSEEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHH----HcCCCCEEE
Confidence 4445432 479999999999999999999999996 333222222333211 11 12443 247899999
Q ss_pred EcCC
Q 028525 71 CPSE 74 (208)
Q Consensus 71 ~~~~ 74 (208)
.+.+
T Consensus 76 lavk 79 (335)
T 3ghy_A 76 VAVK 79 (335)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 8844
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0051 Score=47.98 Aligned_cols=59 Identities=7% Similarity=-0.181 Sum_probs=41.1
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCch-------hhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKR-------NAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~-------~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|..++..|++.| |+|++++|+++ ........++ .. . ++.++++++|+||.+.+
T Consensus 30 IG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~---~~-~----s~~e~~~~aDvVi~avp 96 (317)
T 4ezb_A 30 IGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV---EP-L----DDVAGIACADVVLSLVV 96 (317)
T ss_dssp ECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC---EE-E----SSGGGGGGCSEEEECCC
T ss_pred ECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC---CC-C----CHHHHHhcCCEEEEecC
Confidence 379999999999999999 99999999872 2222222233 11 0 22346778999998843
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.028 Score=43.66 Aligned_cols=27 Identities=4% Similarity=-0.061 Sum_probs=24.9
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCch
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKR 36 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~ 36 (208)
||..|.+++++++++|++|+.+.|+.+
T Consensus 64 SGkmG~aiAe~~~~~Ga~V~lv~g~~s 90 (313)
T 1p9o_A 64 SGRRGATSAEAFLAAGYGVLFLYRARS 90 (313)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEEETTS
T ss_pred CcHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 799999999999999999999998654
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.021 Score=43.37 Aligned_cols=60 Identities=3% Similarity=-0.056 Sum_probs=41.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceE-EEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVE-SMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~-~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.+++.|.+.|++|++++|++++.......++. ... .+.+ ++ .++|+||.+.+
T Consensus 6 iG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~---~~~~---~~-~~~D~vi~av~ 66 (279)
T 2f1k_A 6 VGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAG---QDLS---LL-QTAKIIFLCTP 66 (279)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEE---SCGG---GG-TTCSEEEECSC
T ss_pred EcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCcccc---CCHH---Hh-CCCCEEEEECC
Confidence 4689999999999999999999999998765432222221 111 2322 34 68999998854
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0076 Score=46.41 Aligned_cols=52 Identities=10% Similarity=-0.133 Sum_probs=40.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|++|++++|++.+... ++ ..+++.++++.+|+|+++
T Consensus 129 GlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~-------~~~~l~ell~~aDiV~l~ 180 (290)
T 3gvx_A 129 GYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----DV-------ISESPADLFRQSDFVLIA 180 (290)
T ss_dssp CCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----SE-------ECSSHHHHHHHCSEEEEC
T ss_pred ccCchhHHHHHHHHhhCcEEEEEecccccccc-----cc-------ccCChHHHhhccCeEEEE
Confidence 69999999999999999999999998754321 11 123456678889999977
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.024 Score=44.84 Aligned_cols=80 Identities=9% Similarity=-0.031 Sum_probs=45.8
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCc-h--h-hhhhcCC---------ceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDK-R--N-AMESFGT---------YVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~-~--~-~~~~~~~---------~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.||++|+.+++.|.++. .++.++..+. + + .....+. +.+....|+ |++. +.++|+||.|++
T Consensus 12 AtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~----~~~vDvVf~atp 86 (350)
T 2ep5_A 12 STGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVST-NYED----HKDVDVVLSALP 86 (350)
T ss_dssp CSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECS-SGGG----GTTCSEEEECCC
T ss_pred cCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeC-CHHH----hcCCCEEEECCC
Confidence 49999999999888764 5788886221 1 1 1111110 011112333 3333 368999999866
Q ss_pred Cc----hhhhhhhcCCCeEEEece
Q 028525 75 GF----ISNAGSLKGVQHVILLSQ 94 (208)
Q Consensus 75 ~~----~~~a~~~~gv~~~v~~Ss 94 (208)
.. ....+.++|++ +|-.|+
T Consensus 87 ~~~s~~~a~~~~~aG~~-VId~s~ 109 (350)
T 2ep5_A 87 NELAESIELELVKNGKI-VVSNAS 109 (350)
T ss_dssp HHHHHHHHHHHHHTTCE-EEECSS
T ss_pred hHHHHHHHHHHHHCCCE-EEECCc
Confidence 43 23445567775 555554
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.024 Score=44.66 Aligned_cols=53 Identities=8% Similarity=-0.064 Sum_probs=41.0
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|.+|++++|++++.. ...+.+. ++.++++.+|+|+++
T Consensus 155 GlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~---~~~~~~~--------~l~ell~~aDvV~l~ 207 (343)
T 2yq5_A 155 GVGHIGSAVAEIFSAMGAKVIAYDVAYNPEF---EPFLTYT--------DFDTVLKEADIVSLH 207 (343)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSSCCGGG---TTTCEEC--------CHHHHHHHCSEEEEC
T ss_pred ecCHHHHHHHHHHhhCCCEEEEECCChhhhh---hcccccc--------CHHHHHhcCCEEEEc
Confidence 6999999999999999999999999876522 1223322 455678889999977
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.031 Score=43.95 Aligned_cols=58 Identities=7% Similarity=-0.008 Sum_probs=42.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhh-hhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNA-MESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|.+|..++..|.+.|++|++.+|++++. ......++.+. + +.++++++|+||++.+
T Consensus 23 G~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-----~---~~e~~~~aDvVilavp 81 (338)
T 1np3_A 23 GYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-----D---VKTAVAAADVVMILTP 81 (338)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-----C---HHHHHHTCSEEEECSC
T ss_pred CchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-----c---HHHHHhcCCEEEEeCC
Confidence 699999999999999999999999987652 21112244322 3 3356778999998854
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.012 Score=44.83 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=42.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCC-ceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGT-YVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.+|+.++..|++.|++|+++.|++++..++... ++.+ .+ + +.++++++|+||+++
T Consensus 136 GaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~--~~--~---~~~~~~~aDiVi~at 194 (275)
T 2hk9_A 136 GAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEV--VN--S---PEEVIDKVQVIVNTT 194 (275)
T ss_dssp CCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEE--CS--C---GGGTGGGCSEEEECS
T ss_pred CchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCee--eh--h---HHhhhcCCCEEEEeC
Confidence 689999999999999999999999998775543221 3332 11 2 334667899999883
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.019 Score=41.88 Aligned_cols=41 Identities=7% Similarity=-0.094 Sum_probs=35.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|.+|+.++..|.+.|++|++++|+++ +++++|+||.+.+
T Consensus 26 G~G~mG~~la~~l~~~g~~V~~~~~~~~-------------------------~~~~aD~vi~av~ 66 (209)
T 2raf_A 26 GKGNMGQAIGHNFEIAGHEVTYYGSKDQ-------------------------ATTLGEIVIMAVP 66 (209)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECTTCC-------------------------CSSCCSEEEECSC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCHH-------------------------HhccCCEEEEcCC
Confidence 6999999999999999999999988754 4567899998854
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.062 Score=42.71 Aligned_cols=62 Identities=10% Similarity=0.035 Sum_probs=47.8
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|..|+.+++.|.+.|++|++++.++......... ..+..|+.|.+.+.+.+.++|.|+..
T Consensus 8 g~g~~g~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~~~~~d~v~~~ 69 (380)
T 3ax6_A 8 GGGQLGKMMTLEAKKMGFYVIVLDPTPRSPAGQVAD--EQIVAGFFDSERIEDLVKGSDVTTYD 69 (380)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSTTCTTGGGSS--EEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCc--eEEECCCCCHHHHHHHHhcCCEEEec
Confidence 567889999999999999999998764432111222 35678999999999988899998865
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.021 Score=44.68 Aligned_cols=55 Identities=7% Similarity=-0.015 Sum_probs=42.0
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|++|++++|++..... ..-. ....++.++++.+|+|+++
T Consensus 147 GlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~----~~~~~l~ell~~aDvV~l~ 201 (324)
T 3hg7_A 147 GTGSIGQHIAHTGKHFGMKVLGVSRSGRERAG-----FDQV----YQLPALNKMLAQADVIVSV 201 (324)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSSCCCCTT-----CSEE----ECGGGHHHHHHTCSEEEEC
T ss_pred EECHHHHHHHHHHHhCCCEEEEEcCChHHhhh-----hhcc----cccCCHHHHHhhCCEEEEe
Confidence 69999999999999999999999988743221 1111 1245677889999999976
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.0036 Score=45.50 Aligned_cols=56 Identities=7% Similarity=-0.115 Sum_probs=39.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|.+|+.+++.|.+.|++|++++|+++ .......++.. . +..++++++|+||++
T Consensus 25 IG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~-----~---~~~~~~~~aDvVila 80 (201)
T 2yjz_A 25 FGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEV-----L---CYSEAASRSDVIVLA 80 (201)
Confidence 36999999999999999999999999875 22221112221 1 334567789999987
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0029 Score=48.34 Aligned_cols=33 Identities=9% Similarity=0.077 Sum_probs=23.3
Q ss_pred chhhhc--cccCccHHHHHHHHHh-CCCcEEEEEcC
Q 028525 2 GPMKKM--KRKKMNFRMVILSLIV-KRTRIKALVKD 34 (208)
Q Consensus 2 ~~~~~~--~~~G~iG~~l~~~Ll~-~g~~V~~~~R~ 34 (208)
.+|+.. +.+|++|+.+++.+.+ .++++.++.+.
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~ 39 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALER 39 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 345443 3479999999999885 47888865543
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0082 Score=48.82 Aligned_cols=64 Identities=8% Similarity=-0.145 Sum_probs=42.1
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEE-----------EcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESM-----------AGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v-----------~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.+|..++..|.+ ||+|++++|++++...+......+. .+.+.-..++.++++++|+||.+.
T Consensus 43 GlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDvViiaV 117 (432)
T 3pid_A 43 GTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADYVIIAT 117 (432)
T ss_dssp CCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSEEEECC
T ss_pred CcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCEEEEeC
Confidence 699999999998887 9999999999887544322110000 001111123456788999999883
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.021 Score=45.44 Aligned_cols=57 Identities=4% Similarity=-0.156 Sum_probs=41.0
Q ss_pred ccCccHHHHHHHHHhCCCc-EEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTR-IKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~-V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|++ |++++|++.+.......++..+ . ++.++++.+|+|+++
T Consensus 171 G~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~----~---~l~ell~~aDvV~l~ 228 (364)
T 2j6i_A 171 GAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRV----E---NIEELVAQADIVTVN 228 (364)
T ss_dssp CCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEEC----S---SHHHHHHTCSEEEEC
T ss_pred CcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEec----C---CHHHHHhcCCEEEEC
Confidence 6999999999999999997 9999987644321111233321 1 345678899999977
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.0059 Score=50.37 Aligned_cols=29 Identities=0% Similarity=-0.148 Sum_probs=27.6
Q ss_pred cccCccHHHHHHHHHhC-CC-cEEEEEcCch
Q 028525 8 KRKKMNFRMVILSLIVK-RT-RIKALVKDKR 36 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~-g~-~V~~~~R~~~ 36 (208)
.+.|.+|..++..|++. || +|++++|+++
T Consensus 24 IGlG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 24 LGMGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp ECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred ECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 47999999999999999 99 9999999998
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.021 Score=43.40 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=41.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|..|+.++..|.+.|.+|+++.|+.+++.++..-+++.+ ++.+. .++|+||++
T Consensus 124 lGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~--~~~~l-------~~~DiVIna 179 (269)
T 3phh_A 124 LGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF--MEPPK-------SAFDLIINA 179 (269)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE--SSCCS-------SCCSEEEEC
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe--cHHHh-------ccCCEEEEc
Confidence 368999999999999999999999999988654321123333 34332 279999988
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.0081 Score=45.40 Aligned_cols=60 Identities=12% Similarity=-0.041 Sum_probs=41.4
Q ss_pred cccCccHHHHHHHHHhCCCc-EEEEEcCchhhhhhcCC-ceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTR-IKALVKDKRNAMESFGT-YVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~-V~~~~R~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.+++.|.+.|++ |.+++|++++....... ++.+. . +. .++++++|+||.+.+
T Consensus 16 iG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~-~---~~---~~~~~~~Dvvi~av~ 77 (266)
T 3d1l_A 16 IGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYT-T---DL---AEVNPYAKLYIVSLK 77 (266)
T ss_dssp ECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEE-S---CG---GGSCSCCSEEEECCC
T ss_pred EcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCcee-C---CH---HHHhcCCCEEEEecC
Confidence 36999999999999999999 88999988764332211 33321 2 22 234667899988744
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.028 Score=42.76 Aligned_cols=61 Identities=7% Similarity=-0.125 Sum_probs=42.4
Q ss_pred cccCccHHHHHHHHHhCCC--cEEEEEcCchhhhhhcCCceE-EEEcCCCCHHHHHHHhc-CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRT--RIKALVKDKRNAMESFGTYVE-SMAGDASNKKFLKTALR-GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~--~V~~~~R~~~~~~~~~~~~v~-~v~~Dl~d~~~l~~~~~-~~d~vi~~~~ 74 (208)
.+.|.+|..++..|.+.|+ +|++++|++++.......++. ... .|. .+++. ++|+||.+.+
T Consensus 7 IG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~---~~~---~~~~~~~aDvVilavp 71 (281)
T 2g5c_A 7 VGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGT---TSI---AKVEDFSPDFVMLSSP 71 (281)
T ss_dssp ESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEE---SCG---GGGGGTCCSEEEECSC
T ss_pred EecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCccccc---CCH---HHHhcCCCCEEEEcCC
Confidence 4699999999999999998 899999988764332212222 111 222 24677 8999998844
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.0091 Score=47.39 Aligned_cols=66 Identities=11% Similarity=-0.042 Sum_probs=42.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc--C------CceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF--G------TYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~--~------~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|..++..|.+.||+|++++|++++..... . .+..+ ...+.-..+..+++.++|+||.+.+
T Consensus 21 IG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~aDvVilav~ 94 (366)
T 1evy_A 21 FGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQL-ASNITFTSDVEKAYNGAEIILFVIP 94 (366)
T ss_dssp ECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBC-CTTEEEESCHHHHHTTCSSEEECCC
T ss_pred ECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCccccccccccc-ccceeeeCCHHHHHcCCCEEEECCC
Confidence 47999999999999999999999999876643221 1 01100 0000001123456778999998844
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.011 Score=47.29 Aligned_cols=61 Identities=10% Similarity=-0.077 Sum_probs=46.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhh---hhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAM---ESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~---~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.+++.|...|.+|++++|++++.. +..+..+. .+..+.+++.+.+.++|+||.+
T Consensus 175 G~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~---~~~~~~~~l~~~l~~aDvVi~~ 238 (377)
T 2vhw_A 175 GAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIH---TRYSSAYELEGAVKRADLVIGA 238 (377)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSE---EEECCHHHHHHHHHHCSEEEEC
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeE---eccCCHHHHHHHHcCCCEEEEC
Confidence 5799999999999999999999999987643 22333332 2334566788888899999987
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.079 Score=42.30 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=48.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.+++.+.+.|++|++++.++........+ ..+..++.|.+.+.+.++.+|+|...
T Consensus 21 G~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad--~~~~~~~~d~~~l~~~~~~~dvI~~~ 82 (389)
T 3q2o_A 21 GGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVAD--IEIVASYDDLKAIQHLAEISDVVTYE 82 (389)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCS--EEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred CCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCC--ceEecCcCCHHHHHHHHHhCCEeeec
Confidence 689999999999999999999998765432111111 35568999999999999999988654
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.028 Score=44.20 Aligned_cols=55 Identities=9% Similarity=-0.206 Sum_probs=41.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|++|++++|+.++... ...+++. . ++.++++++|+|+++
T Consensus 172 GlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~~~g~~~-----~---~l~ell~~aDvV~l~ 226 (335)
T 2g76_A 172 GLGRIGREVATRMQSFGMKTIGYDPIISPEVS-ASFGVQQ-----L---PLEEIWPLCDFITVH 226 (335)
T ss_dssp CCSHHHHHHHHHHHTTTCEEEEECSSSCHHHH-HHTTCEE-----C---CHHHHGGGCSEEEEC
T ss_pred eECHHHHHHHHHHHHCCCEEEEECCCcchhhh-hhcCcee-----C---CHHHHHhcCCEEEEe
Confidence 69999999999999999999999998765311 1123432 1 345688899999977
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.019 Score=43.20 Aligned_cols=59 Identities=12% Similarity=-0.054 Sum_probs=41.4
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhhcCC-ceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKRNAMESFGT-YVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..|++.| |+|++++|++++....... ++.+ ..|.. +++ ++|+||.+.+
T Consensus 6 iG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~-~~~~~------~~~-~~D~vi~~v~ 66 (263)
T 1yqg_A 6 LGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVET-SATLP------ELH-SDDVLILAVK 66 (263)
T ss_dssp ECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEE-ESSCC------CCC-TTSEEEECSC
T ss_pred ECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEE-eCCHH------HHh-cCCEEEEEeC
Confidence 468999999999999999 9999999998765433211 3443 23332 245 7888887744
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.065 Score=53.37 Aligned_cols=64 Identities=6% Similarity=-0.060 Sum_probs=48.6
Q ss_pred ccCc-cHHHHHHHHHhCCCcEEEEEcCchh-----hhh---hc---CCceEEEEcCCCCHHHHHHHhc-----------C
Q 028525 9 RKKM-NFRMVILSLIVKRTRIKALVKDKRN-----AME---SF---GTYVESMAGDASNKKFLKTALR-----------G 65 (208)
Q Consensus 9 ~~G~-iG~~l~~~Ll~~g~~V~~~~R~~~~-----~~~---~~---~~~v~~v~~Dl~d~~~l~~~~~-----------~ 65 (208)
+++. ||+++++.|+++|++|++.+|+.++ ..+ .. +..+..+.+|++|.+++.++++ +
T Consensus 2144 As~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~i~~~~~~~fG~ 2223 (3089)
T 3zen_D 2144 ASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEWVGTEQTESLGP 2223 (3089)
T ss_dssp CCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHHTSCCEEEESS
T ss_pred CChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHHHHhhhhhhcCC
Confidence 3556 9999999999999999999998655 211 11 2347788999999999888742 3
Q ss_pred CCEEEEc
Q 028525 66 VRSIICP 72 (208)
Q Consensus 66 ~d~vi~~ 72 (208)
.|++|++
T Consensus 2224 IDILVNN 2230 (3089)
T 3zen_D 2224 QSIHLKD 2230 (3089)
T ss_dssp SEEEECC
T ss_pred CCEEEEC
Confidence 5888866
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.015 Score=46.05 Aligned_cols=56 Identities=2% Similarity=-0.200 Sum_probs=41.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|++|++++|+..... ....+++.+ +++.++++.+|+|+++
T Consensus 167 GlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~g~~~~-------~~l~ell~~aDiV~l~ 222 (352)
T 3gg9_A 167 GYGKIGQLVAGYGRAFGMNVLVWGRENSKER-ARADGFAVA-------ESKDALFEQSDVLSVH 222 (352)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSHHHHHH-HHHTTCEEC-------SSHHHHHHHCSEEEEC
T ss_pred eECHHHHHHHHHHHhCCCEEEEECCCCCHHH-HHhcCceEe-------CCHHHHHhhCCEEEEe
Confidence 6999999999999999999999998754321 112234422 2455678889999976
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.09 Score=38.75 Aligned_cols=62 Identities=10% Similarity=-0.018 Sum_probs=47.1
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchh-hhhhc-CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRN-AMESF-GTYVESMAGDASNKKFLKTALRGVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~ 75 (208)
+.|.+|...++.|++.|.+|++++++... ...+. ..+++++..++.+ + .+.++|.||.+++.
T Consensus 38 GgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~-~----dL~~adLVIaAT~d 101 (223)
T 3dfz_A 38 GGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGE-E----DLLNVFFIVVATND 101 (223)
T ss_dssp CCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCG-G----GSSSCSEEEECCCC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCH-h----HhCCCCEEEECCCC
Confidence 69999999999999999999999887654 22222 2368888887764 2 36789999987543
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=94.80 E-value=0.032 Score=42.77 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=45.0
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCchhhhhh---c---CCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDKRNAMES---F---GTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~~---~---~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.+|+.++..|.+.|. +|+++.|+.++..++ + ...+.+...++.+ +.+.+.++|+||+++
T Consensus 134 GaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~---l~~~l~~~DiVInaT 202 (283)
T 3jyo_A 134 GAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARG---IEDVIAAADGVVNAT 202 (283)
T ss_dssp CCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTT---HHHHHHHSSEEEECS
T ss_pred CCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHH---HHHHHhcCCEEEECC
Confidence 589999999999999997 699999998774332 1 1123444455544 456677899999883
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.026 Score=43.96 Aligned_cols=55 Identities=9% Similarity=-0.155 Sum_probs=41.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|++|++++|++++... ...++.. .+ +.++++++|+|+++
T Consensus 149 G~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~-~~~g~~~-----~~---l~ell~~aDvVvl~ 203 (313)
T 2ekl_A 149 GFGRIGTKVGIIANAMGMKVLAYDILDIREKA-EKINAKA-----VS---LEELLKNSDVISLH 203 (313)
T ss_dssp SCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-HHTTCEE-----CC---HHHHHHHCSEEEEC
T ss_pred eeCHHHHHHHHHHHHCCCEEEEECCCcchhHH-HhcCcee-----cC---HHHHHhhCCEEEEe
Confidence 69999999999999999999999998766321 1123442 13 34567789999977
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.02 Score=44.94 Aligned_cols=53 Identities=6% Similarity=-0.147 Sum_probs=40.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.+|+.+++.|...|++|++++|++.+.. ++.. .. ++.++++.+|+|+++.
T Consensus 171 G~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g~~~----~~---~l~ell~~aDvVil~v 223 (333)
T 3ba1_A 171 GLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----NYTY----YG---SVVELASNSDILVVAC 223 (333)
T ss_dssp CCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----CSEE----ES---CHHHHHHTCSEEEECS
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----Ccee----cC---CHHHHHhcCCEEEEec
Confidence 6999999999999999999999998875432 2221 12 3456788999999773
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.02 Score=44.55 Aligned_cols=50 Identities=8% Similarity=-0.114 Sum_probs=39.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|++|++++|+.++.. .+.. ++.++++.+|+|+++
T Consensus 151 G~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-----------~~~~---~l~ell~~aDvV~l~ 200 (311)
T 2cuk_A 151 GMGRIGQAVAKRALAFGMRVVYHARTPKPLP-----------YPFL---SLEELLKEADVVSLH 200 (311)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSSCCSSS-----------SCBC---CHHHHHHHCSEEEEC
T ss_pred EECHHHHHHHHHHHHCCCEEEEECCCCcccc-----------cccC---CHHHHHhhCCEEEEe
Confidence 6999999999999999999999998765421 2333 345677889999977
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.033 Score=43.14 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=39.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|++|++++|++. .. +. ....++.++++.+|+|+++
T Consensus 131 G~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~----~~-------~~~~~l~ell~~aDvV~l~ 181 (303)
T 1qp8_A 131 GLGEIGTRVGKILAALGAQVRGFSRTPK--EG----PW-------RFTNSLEEALREARAAVCA 181 (303)
T ss_dssp SCSTHHHHHHHHHHHTTCEEEEECSSCC--CS----SS-------CCBSCSHHHHTTCSEEEEC
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCcc--cc----Cc-------ccCCCHHHHHhhCCEEEEe
Confidence 6999999999999999999999998775 11 11 1122345688899999977
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.05 Score=43.52 Aligned_cols=65 Identities=8% Similarity=-0.142 Sum_probs=44.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCC----------------------CHHHHHHHhcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDAS----------------------NKKFLKTALRGV 66 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~----------------------d~~~l~~~~~~~ 66 (208)
+.|.+|..+++.+...|.+|++++|++.+......-+.+++..|.. +.+.+.+.+.++
T Consensus 179 GaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~a 258 (384)
T 1l7d_A 179 GVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKT 258 (384)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHHHHhCCC
Confidence 6899999999999999999999999876642221122333311221 134477888899
Q ss_pred CEEEEcC
Q 028525 67 RSIICPS 73 (208)
Q Consensus 67 d~vi~~~ 73 (208)
|+||.++
T Consensus 259 DvVi~~~ 265 (384)
T 1l7d_A 259 DIAITTA 265 (384)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9999774
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.011 Score=45.01 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=21.8
Q ss_pred ccCccHHHHHHHHHhC-CCcEEEE-EcCch
Q 028525 9 RKKMNFRMVILSLIVK-RTRIKAL-VKDKR 36 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~-g~~V~~~-~R~~~ 36 (208)
.+|++|+.+++.+.+. ++++.++ +|+.+
T Consensus 15 a~G~MG~~i~~~l~~~~~~eLv~~~d~~~~ 44 (272)
T 4f3y_A 15 ASGRMGRMLIEAVLAAPDATLVGALDRTGS 44 (272)
T ss_dssp TTSHHHHHHHHHHHHCTTEEEEEEBCCTTC
T ss_pred CCCHHHHHHHHHHHhCCCCEEEEEEEecCc
Confidence 3999999999999876 5787774 56543
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.024 Score=44.12 Aligned_cols=86 Identities=7% Similarity=-0.130 Sum_probs=51.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCH---HHHHHHhc--CCCEEEEcCCCchh-hhhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNK---KFLKTALR--GVRSIICPSEGFIS-NAGS 82 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~---~~l~~~~~--~~d~vi~~~~~~~~-~a~~ 82 (208)
.+|.+|..+++.+...|++|++++|++++.......+...+ .|..+. +.+.+... ++|++|.++++... .+.+
T Consensus 149 a~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~ 227 (327)
T 1qor_A 149 AAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQV-INYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLD 227 (327)
T ss_dssp TTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEE-EETTTSCHHHHHHHHTTTCCEEEEEECSCGGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEE-EECCCccHHHHHHHHhCCCCceEEEECCchHHHHHHHH
Confidence 47899999999999999999999998766322211122222 355543 33333332 57999988554322 2222
Q ss_pred hc-CCCeEEEecee
Q 028525 83 LK-GVQHVILLSQL 95 (208)
Q Consensus 83 ~~-gv~~~v~~Ss~ 95 (208)
.. .-.+++.+++.
T Consensus 228 ~l~~~G~iv~~g~~ 241 (327)
T 1qor_A 228 CLQRRGLMVSFGNS 241 (327)
T ss_dssp TEEEEEEEEECCCT
T ss_pred HhcCCCEEEEEecC
Confidence 11 11378777654
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.043 Score=45.27 Aligned_cols=65 Identities=8% Similarity=-0.009 Sum_probs=44.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCC-c-----eEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGT-Y-----VESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~-~-----v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..|.+.||+|++++|++++....... + -.+. -..+.+++.+.++++|+||.+.+
T Consensus 7 IG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~--~~~~~~e~v~~l~~aDvVilaVp 77 (478)
T 1pgj_A 7 VGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLK--AFETMEAFAASLKKPRKALILVQ 77 (478)
T ss_dssp ECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEE--ECSCHHHHHHHBCSSCEEEECCC
T ss_pred EChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeE--EECCHHHHHhcccCCCEEEEecC
Confidence 4799999999999999999999999998764332110 1 0111 13355555555557999998833
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.02 Score=44.76 Aligned_cols=56 Identities=11% Similarity=-0.080 Sum_probs=41.7
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.||+.+++.|...|++|++++|++...... . ..+. ..++.++++.+|+|+++.
T Consensus 144 GlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-~---~~~~-----~~~l~ell~~aDvV~l~l 199 (324)
T 3evt_A 144 GTGQIGQSLAAKASALGMHVIGVNTTGHPADHF-H---ETVA-----FTATADALATANFIVNAL 199 (324)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTC-S---EEEE-----GGGCHHHHHHCSEEEECC
T ss_pred CcCHHHHHHHHHHHhCCCEEEEECCCcchhHhH-h---hccc-----cCCHHHHHhhCCEEEEcC
Confidence 699999999999999999999999987553211 1 1111 234567888899999773
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.029 Score=43.23 Aligned_cols=31 Identities=0% Similarity=-0.213 Sum_probs=28.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA 38 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~ 38 (208)
.+.|.+|..++..|++.||+|++++|++++.
T Consensus 21 IG~G~mG~~iA~~la~~G~~V~~~d~~~~~~ 51 (302)
T 1f0y_A 21 IGGGLMGAGIAQVAAATGHTVVLVDQTEDIL 51 (302)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence 3699999999999999999999999997653
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.022 Score=44.74 Aligned_cols=55 Identities=11% Similarity=-0.048 Sum_probs=40.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.+++.|...|++|++++|++++ ......++.. .+ +.++++++|+|+.+
T Consensus 157 G~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-----~~---l~~~l~~aDvVil~ 211 (334)
T 2dbq_A 157 GLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEF-----KP---LEDLLRESDFVVLA 211 (334)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEE-----CC---HHHHHHHCSEEEEC
T ss_pred ccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCccc-----CC---HHHHHhhCCEEEEC
Confidence 69999999999999999999999998765 2111112321 23 44577889999977
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.12 Score=41.02 Aligned_cols=62 Identities=8% Similarity=-0.059 Sum_probs=46.9
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~ 72 (208)
+.|.+|..+++.+.+.|++|++++..+........+ +.+..|+.|.+.+.+.++ ++|+|+..
T Consensus 18 g~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d--~~~~~~~~d~~~l~~~~~~~~~d~v~~~ 81 (391)
T 1kjq_A 18 GSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAH--RSHVINMLDGDALRRVVELEKPHYIVPE 81 (391)
T ss_dssp SCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSS--EEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCEEEEEECCCCCchhhhcc--ceEECCCCCHHHHHHHHHHcCCCEEEEC
Confidence 578889999999999999999998765432111122 456678899998888875 79999865
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.026 Score=38.31 Aligned_cols=72 Identities=7% Similarity=0.058 Sum_probs=44.9
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----hhhhhhhcC
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF----ISNAGSLKG 85 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~----~~~a~~~~g 85 (208)
.|..|..+++.|++.||+|+.+.++.+.. .++.+ ..++.| +.+.+|.++.+.+.. ..+.+...|
T Consensus 26 ~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~G~~~-~~s~~e------l~~~vDlvii~vp~~~v~~v~~~~~~~g 93 (138)
T 1y81_A 26 PAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKC-YRSVRE------LPKDVDVIVFVVPPKVGLQVAKEAVEAG 93 (138)
T ss_dssp TTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEEC-BSSGGG------SCTTCCEEEECSCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----CCeee-cCCHHH------hCCCCCEEEEEeCHHHHHHHHHHHHHcC
Confidence 39999999999999999977766543221 12332 223332 334689999884432 223344578
Q ss_pred CCeEEEec
Q 028525 86 VQHVILLS 93 (208)
Q Consensus 86 v~~~v~~S 93 (208)
++.++..+
T Consensus 94 ~~~i~~~~ 101 (138)
T 1y81_A 94 FKKLWFQP 101 (138)
T ss_dssp CCEEEECT
T ss_pred CCEEEEcC
Confidence 88776655
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.019 Score=45.27 Aligned_cols=52 Identities=4% Similarity=-0.172 Sum_probs=40.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|++|++++|++.+.. .... ..++.++++.+|+|+++
T Consensus 178 GlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~-----~~~~-------~~sl~ell~~aDvVil~ 229 (340)
T 4dgs_A 178 GLGQIGRALASRAEAFGMSVRYWNRSTLSGV-----DWIA-------HQSPVDLARDSDVLAVC 229 (340)
T ss_dssp CCSHHHHHHHHHHHTTTCEEEEECSSCCTTS-----CCEE-------CSSHHHHHHTCSEEEEC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCccccc-----Ccee-------cCCHHHHHhcCCEEEEe
Confidence 6999999999999999999999998875421 1221 13456788899999977
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.079 Score=41.98 Aligned_cols=84 Identities=10% Similarity=0.019 Sum_probs=56.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc-CCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC--chhhh---hh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF-GTYVESMAGDASNKKFLKTALRGVRSIICPSEG--FISNA---GS 82 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~--~~~~a---~~ 82 (208)
+.|.+|..+++.+...|.+|+++++++++..... .-+...+ .|..+.+.+.++..++|+||.+.++ ....+ ++
T Consensus 195 GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v-~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~ 273 (366)
T 1yqd_A 195 GLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSF-LVSRDQEQMQAAAGTLDGIIDTVSAVHPLLPLFGLLK 273 (366)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEE-EETTCHHHHHHTTTCEEEEEECCSSCCCSHHHHHHEE
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceE-EeccCHHHHHHhhCCCCEEEECCCcHHHHHHHHHHHh
Confidence 3689999999999889999999999887643221 2233322 4677777777777789999987442 22222 22
Q ss_pred hcCCCeEEEecee
Q 028525 83 LKGVQHVILLSQL 95 (208)
Q Consensus 83 ~~gv~~~v~~Ss~ 95 (208)
..| +++.+++.
T Consensus 274 ~~G--~iv~~g~~ 284 (366)
T 1yqd_A 274 SHG--KLILVGAP 284 (366)
T ss_dssp EEE--EEEECCCC
T ss_pred cCC--EEEEEccC
Confidence 233 78877653
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.028 Score=43.84 Aligned_cols=87 Identities=11% Similarity=-0.035 Sum_probs=51.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHh----c-CCCEEEEcCCCchh-hhhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTAL----R-GVRSIICPSEGFIS-NAGS 82 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~----~-~~d~vi~~~~~~~~-~a~~ 82 (208)
.+|.+|..+++.+...|++|++++|++++.......+... ..|+.+.+++.+.+ . ++|++|.++++... .+.+
T Consensus 154 a~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~ 232 (333)
T 1v3u_A 154 AAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDA-AFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLS 232 (333)
T ss_dssp TTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE-EEETTSCSCHHHHHHHHCTTCEEEEEESSCHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcE-EEecCCHHHHHHHHHHHhCCCCeEEEECCChHHHHHHHH
Confidence 4789999999999999999999999876643221112222 23665522222222 2 58999988654322 2221
Q ss_pred hc-CCCeEEEeceee
Q 028525 83 LK-GVQHVILLSQLS 96 (208)
Q Consensus 83 ~~-gv~~~v~~Ss~~ 96 (208)
.. .-.+++.++...
T Consensus 233 ~l~~~G~~v~~g~~~ 247 (333)
T 1v3u_A 233 QMKDFGKIAICGAIS 247 (333)
T ss_dssp TEEEEEEEEECCCCC
T ss_pred HHhcCCEEEEEeccc
Confidence 11 113777776544
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.029 Score=43.99 Aligned_cols=87 Identities=8% Similarity=-0.103 Sum_probs=51.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc-CCceEEEEcCCCCH----HHHHHHh-cCCCEEEEcCCCchh-hhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF-GTYVESMAGDASNK----KFLKTAL-RGVRSIICPSEGFIS-NAG 81 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~----~~l~~~~-~~~d~vi~~~~~~~~-~a~ 81 (208)
.+|.+|..+++.+...|++|++.+|++++..... .-+...+ .|+.+. +.+.+.. .++|++|.+.++... .+.
T Consensus 164 a~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~ 242 (345)
T 2j3h_A 164 ASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDA-FNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVL 242 (345)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEE-EETTSCSCSHHHHHHHCTTCEEEEEESSCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceE-EecCCHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHH
Confidence 4789999999999999999999999887643221 1223322 255442 2333332 258999988554322 222
Q ss_pred hhc-CCCeEEEeceee
Q 028525 82 SLK-GVQHVILLSQLS 96 (208)
Q Consensus 82 ~~~-gv~~~v~~Ss~~ 96 (208)
+.. .-.+++.++...
T Consensus 243 ~~l~~~G~~v~~G~~~ 258 (345)
T 2j3h_A 243 VNMNMHGRIAVCGMIS 258 (345)
T ss_dssp TTEEEEEEEEECCCGG
T ss_pred HHHhcCCEEEEEcccc
Confidence 111 113777766443
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=94.51 E-value=0.02 Score=45.26 Aligned_cols=57 Identities=7% Similarity=-0.062 Sum_probs=40.7
Q ss_pred ccCccHHHHHHHHH-hCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLI-VKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll-~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|. ..|++|++++|++.+.......++.++ .+ +.++++.+|+|+.+
T Consensus 170 G~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~---l~ell~~aDvVil~ 227 (348)
T 2w2k_A 170 GLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERV----DS---LEELARRSDCVSVS 227 (348)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEEC----SS---HHHHHHHCSEEEEC
T ss_pred EECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEe----CC---HHHHhccCCEEEEe
Confidence 69999999999999 899999999998754321111123322 23 44567789999977
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=94.50 E-value=0.039 Score=45.40 Aligned_cols=56 Identities=11% Similarity=-0.150 Sum_probs=43.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|.+|++++|++.+..+....++.+ . ++.++++.+|+|+.+
T Consensus 264 G~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-----~---~l~ell~~aDiVi~~ 319 (479)
T 1v8b_A 264 GYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-----V---TLDEIVDKGDFFITC 319 (479)
T ss_dssp CCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-----C---CHHHHTTTCSEEEEC
T ss_pred eeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-----c---CHHHHHhcCCEEEEC
Confidence 6999999999999999999999999987643222334432 1 356788999999977
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.038 Score=43.11 Aligned_cols=86 Identities=6% Similarity=-0.124 Sum_probs=51.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCH---HHHHHHhc--CCCEEEEcCCCch-hhhhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNK---KFLKTALR--GVRSIICPSEGFI-SNAGS 82 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~---~~l~~~~~--~~d~vi~~~~~~~-~~a~~ 82 (208)
.+|.+|..+++.+...|++|++++|++++......-+.+.+ .|+++. +.+.+... ++|++|.++++.. ..+.+
T Consensus 154 a~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~-~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~~~~~~~~~ 232 (333)
T 1wly_A 154 AAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHT-INYSTQDFAEVVREITGGKGVDVVYDSIGKDTLQKSLD 232 (333)
T ss_dssp TTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEE-EETTTSCHHHHHHHHHTTCCEEEEEECSCTTTHHHHHH
T ss_pred CccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE-EECCCHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHH
Confidence 47999999999999999999999998766322211122222 355543 33444442 5899998855432 22222
Q ss_pred hc-CCCeEEEecee
Q 028525 83 LK-GVQHVILLSQL 95 (208)
Q Consensus 83 ~~-gv~~~v~~Ss~ 95 (208)
.. .-.+++.++..
T Consensus 233 ~l~~~G~iv~~g~~ 246 (333)
T 1wly_A 233 CLRPRGMCAAYGHA 246 (333)
T ss_dssp TEEEEEEEEECCCT
T ss_pred hhccCCEEEEEecC
Confidence 11 11267777643
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.024 Score=45.54 Aligned_cols=57 Identities=4% Similarity=-0.195 Sum_probs=40.8
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|++|++++|+..+.......++..+ . ++.++++.+|+|+++
T Consensus 198 GlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~----~---~l~ell~~aDvV~l~ 254 (393)
T 2nac_A 198 AAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWH----A---TREDMYPVCDVVTLN 254 (393)
T ss_dssp CCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEEC----S---SHHHHGGGCSEEEEC
T ss_pred eECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceec----C---CHHHHHhcCCEEEEe
Confidence 69999999999999999999999987644221111123321 1 345688899999976
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.05 Score=44.96 Aligned_cols=56 Identities=9% Similarity=-0.152 Sum_probs=43.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|.+|++++|++.+..+....++.+. ++.++++.+|+|+.+
T Consensus 284 G~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~--------~l~ell~~aDiVi~~ 339 (494)
T 3d64_A 284 GYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVV--------TMEYAADKADIFVTA 339 (494)
T ss_dssp CCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEEC--------CHHHHTTTCSEEEEC
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeC--------CHHHHHhcCCEEEEC
Confidence 69999999999999999999999999876422222344431 366788999999977
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.016 Score=45.52 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=41.9
Q ss_pred hhhhc--cccCccHHHHHHHHHhCCC--c-----EEEEEcCch--h----hhhhc--C-CceEEEEcCCCCHHHHHHHhc
Q 028525 3 PMKKM--KRKKMNFRMVILSLIVKRT--R-----IKALVKDKR--N----AMESF--G-TYVESMAGDASNKKFLKTALR 64 (208)
Q Consensus 3 ~~~~~--~~~G~iG~~l~~~Ll~~g~--~-----V~~~~R~~~--~----~~~~~--~-~~v~~v~~Dl~d~~~l~~~~~ 64 (208)
|||+. ++.|+||++++..|+..+. + +..+++++. + ..++. . ..+. ++...+...++++
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~----~~~~~~~~~~~~~ 78 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLK----DVIATDKEEIAFK 78 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEE----EEEEESCHHHHTT
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccC----CEEEcCCcHHHhC
Confidence 66654 3589999999999988774 5 888888642 2 12111 1 1122 2211233467899
Q ss_pred CCCEEEEc
Q 028525 65 GVRSIICP 72 (208)
Q Consensus 65 ~~d~vi~~ 72 (208)
++|+||++
T Consensus 79 daDvVvit 86 (333)
T 5mdh_A 79 DLDVAILV 86 (333)
T ss_dssp TCSEEEEC
T ss_pred CCCEEEEe
Confidence 99999987
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.065 Score=42.59 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=45.0
Q ss_pred cccCccHHHHHHHHHhCCC---cEEEEEcCch--hhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCch----h
Q 028525 8 KRKKMNFRMVILSLIVKRT---RIKALVKDKR--NAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGFI----S 78 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~---~V~~~~R~~~--~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~~----~ 78 (208)
+.||++|+.|++.|.+++| ++..+.-+.+ +.....+ .+...-+++. + .+.++|+||.|++... .
T Consensus 9 GATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~--~~~~~~~~~~-~----~~~~~Dvvf~a~~~~~s~~~a 81 (366)
T 3pwk_A 9 GATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKD--QDITIEETTE-T----AFEGVDIALFSAGSSTSAKYA 81 (366)
T ss_dssp TTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETT--EEEEEEECCT-T----TTTTCSEEEECSCHHHHHHHH
T ss_pred CCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecC--CCceEeeCCH-H----HhcCCCEEEECCChHhHHHHH
Confidence 5699999999998888765 3444442211 1111111 2222223321 2 3578999999866432 2
Q ss_pred hhhhhcCCCeEEEecee
Q 028525 79 NAGSLKGVQHVILLSQL 95 (208)
Q Consensus 79 ~a~~~~gv~~~v~~Ss~ 95 (208)
..+..+|+ ++|-+|+.
T Consensus 82 ~~~~~~G~-~vIDlSa~ 97 (366)
T 3pwk_A 82 PYAVKAGV-VVVDNTSY 97 (366)
T ss_dssp HHHHHTTC-EEEECSST
T ss_pred HHHHHCCC-EEEEcCCc
Confidence 33445677 46666663
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=94.27 E-value=0.034 Score=44.83 Aligned_cols=60 Identities=13% Similarity=-0.020 Sum_probs=43.3
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCchhhhhhcC-CceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDKRNAMESFG-TYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.+|+.+++.|...|. +|++++|++++..+... -+.++ .++ +++.+.+.++|+||.++
T Consensus 174 GaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~--~~~---~~l~~~l~~aDvVi~at 235 (404)
T 1gpj_A 174 GAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEA--VRF---DELVDHLARSDVVVSAT 235 (404)
T ss_dssp SCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEE--CCG---GGHHHHHHTCSEEEECC
T ss_pred ChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCce--ecH---HhHHHHhcCCCEEEEcc
Confidence 689999999999999998 89999999876422110 12332 233 34666778999999883
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.13 Score=38.49 Aligned_cols=87 Identities=9% Similarity=0.045 Sum_probs=52.2
Q ss_pred cccCccHHHHHHHHHhC-CCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-----CCCEEEEcCCCc-----
Q 028525 8 KRKKMNFRMVILSLIVK-RTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-----GVRSIICPSEGF----- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~-g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-----~~d~vi~~~~~~----- 76 (208)
+.+|.+|+.+++.+.++ ++++.+.....+...+....... +..|++.++...+.+. +.++|+.+++-.
T Consensus 7 Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~~~D-vvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~~~e~~~ 85 (245)
T 1p9l_A 7 GAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTE-VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQ 85 (245)
T ss_dssp TTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHTTCC-EEEECSCTTTHHHHHHHHHHTTCEEEECCCCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhccCCc-EEEEccChHHHHHHHHHHHHcCCCEEEcCCCCCHHHHH
Confidence 45899999999999876 89998877554333222212345 4578888777765542 567766543311
Q ss_pred -hhhhhhhc-CCCeEEEeceee
Q 028525 77 -ISNAGSLK-GVQHVILLSQLS 96 (208)
Q Consensus 77 -~~~a~~~~-gv~~~v~~Ss~~ 96 (208)
+..++++. ++ .+++.+.++
T Consensus 86 ~l~~aa~~~~~~-~vv~a~N~s 106 (245)
T 1p9l_A 86 QVESWLVAKPNT-SVLIAPNFA 106 (245)
T ss_dssp HHHHHHHTSTTC-EEEECSCCC
T ss_pred HHHHHHHhCCCC-CEEEECCcc
Confidence 12334434 55 456666544
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.012 Score=47.89 Aligned_cols=65 Identities=3% Similarity=-0.153 Sum_probs=44.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCC-------------CHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDAS-------------NKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~-------------d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|++|..++-.|.+.||+|++++.++++...+......+.+-++. =..+..+++..+|++|.|
T Consensus 27 iGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~~~I~ 104 (444)
T 3vtf_A 27 LGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDATFIA 104 (444)
T ss_dssp ECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSEEEEC
T ss_pred EccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCceEEE
Confidence 47999999999999999999999999988865443222222221111 112334677889999988
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.11 Score=42.14 Aligned_cols=36 Identities=0% Similarity=-0.201 Sum_probs=31.4
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF 42 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~ 42 (208)
..+.|.+|..++..|++.||+|++++|++++...+.
T Consensus 16 ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~ 51 (431)
T 3ojo_A 16 VVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQ 51 (431)
T ss_dssp EECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred EEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 347999999999999999999999999998865443
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.022 Score=44.65 Aligned_cols=56 Identities=4% Similarity=-0.207 Sum_probs=40.1
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|++|++++|++.+.......++.. . ++.++++.+|+|+++
T Consensus 152 G~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-----~---~l~ell~~aDvV~l~ 207 (330)
T 4e5n_A 152 GMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQ-----V---ACSELFASSDFILLA 207 (330)
T ss_dssp CCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEE-----C---CHHHHHHHCSEEEEC
T ss_pred eeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCcee-----C---CHHHHHhhCCEEEEc
Confidence 6999999999999999999999999873321111113322 1 245678889999976
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.06 Score=42.19 Aligned_cols=85 Identities=9% Similarity=0.024 Sum_probs=53.0
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCH---HHHHHHhc--CCCEEEEcCCCc-hhh---
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNK---KFLKTALR--GVRSIICPSEGF-ISN--- 79 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~---~~l~~~~~--~~d~vi~~~~~~-~~~--- 79 (208)
.+|.+|..+++.+...|++|++++|++++.......+...+ .|+.+. +.+.+... ++|+||.+.++. ...
T Consensus 175 asg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~-~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~ 253 (343)
T 2eih_A 175 AGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADET-VNYTHPDWPKEVRRLTGGKGADKVVDHTGALYFEGVIK 253 (343)
T ss_dssp TTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEE-EETTSTTHHHHHHHHTTTTCEEEEEESSCSSSHHHHHH
T ss_pred CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEE-EcCCcccHHHHHHHHhCCCCceEEEECCCHHHHHHHHH
Confidence 47999999999999999999999998776432211122222 355543 33444443 589999885443 222
Q ss_pred hhhhcCCCeEEEeceee
Q 028525 80 AGSLKGVQHVILLSQLS 96 (208)
Q Consensus 80 a~~~~gv~~~v~~Ss~~ 96 (208)
.++..| +++.+++..
T Consensus 254 ~l~~~G--~~v~~g~~~ 268 (343)
T 2eih_A 254 ATANGG--RIAIAGASS 268 (343)
T ss_dssp HEEEEE--EEEESSCCC
T ss_pred hhccCC--EEEEEecCC
Confidence 233333 788777543
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.054 Score=43.64 Aligned_cols=64 Identities=9% Similarity=-0.024 Sum_probs=44.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCC-------------CH-------HHHHHHhcCCCE
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDAS-------------NK-------KFLKTALRGVRS 68 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~-------------d~-------~~l~~~~~~~d~ 68 (208)
+.|.+|..+++.|...|.+|++++|++.+.......+.+++..|.. +. +.+.+.+.++|+
T Consensus 179 GaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDv 258 (401)
T 1x13_A 179 GAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDI 258 (401)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHHCSE
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHHhCCCCE
Confidence 6899999999999999999999999987643322123444322221 11 247778888999
Q ss_pred EEEc
Q 028525 69 IICP 72 (208)
Q Consensus 69 vi~~ 72 (208)
||.+
T Consensus 259 VI~~ 262 (401)
T 1x13_A 259 IVTT 262 (401)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9976
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.025 Score=44.18 Aligned_cols=56 Identities=7% Similarity=-0.206 Sum_probs=40.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEc-CchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVK-DKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R-~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|...|++|++++| ++++... ...++.+ . . ++.++++++|+|+++
T Consensus 153 G~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~--~--~---~l~ell~~aDvVil~ 209 (320)
T 1gdh_A 153 GFGSIGQALAKRAQGFDMDIDYFDTHRASSSDE-ASYQATF--H--D---SLDSLLSVSQFFSLN 209 (320)
T ss_dssp CCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-HHHTCEE--C--S---SHHHHHHHCSEEEEC
T ss_pred CcCHHHHHHHHHHHHCCCEEEEECCCCcChhhh-hhcCcEE--c--C---CHHHHHhhCCEEEEe
Confidence 6999999999999999999999999 7755311 1113332 1 1 345677889999977
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.12 Score=40.97 Aligned_cols=80 Identities=15% Similarity=-0.017 Sum_probs=44.7
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCch--h-hhhhcC-----------CceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKR--N-AMESFG-----------TYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~--~-~~~~~~-----------~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.||++|..|++.|.+.. .++..+..+.+ + .....+ ..+.+.. + +++ .+.++|+||.|
T Consensus 14 GATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~--~-~~~----~~~~vDvvf~a 86 (359)
T 4dpk_A 14 GATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP--T-DPK----LMDDVDIIFSP 86 (359)
T ss_dssp TTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE--C-CGG----GCTTCCEEEEC
T ss_pred CCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEe--C-CHH----HhcCCCEEEEC
Confidence 359999999999776653 56776654332 1 222111 0122211 1 222 24689999999
Q ss_pred CCCch----hhhhhhcCCCeEEEecee
Q 028525 73 SEGFI----SNAGSLKGVQHVILLSQL 95 (208)
Q Consensus 73 ~~~~~----~~a~~~~gv~~~v~~Ss~ 95 (208)
.+... ...+..+|+ ++|-+|+.
T Consensus 87 ~p~~~s~~~a~~~~~~G~-~vIDlSa~ 112 (359)
T 4dpk_A 87 LPQGAAGPVEEQFAKEGF-PVISNSPD 112 (359)
T ss_dssp CCTTTHHHHHHHHHHTTC-EEEECSST
T ss_pred CChHHHHHHHHHHHHCCC-EEEEcCCC
Confidence 55432 233445677 45666654
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.12 Score=40.97 Aligned_cols=80 Identities=15% Similarity=-0.017 Sum_probs=44.7
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCch--h-hhhhcC-----------CceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKR--N-AMESFG-----------TYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~--~-~~~~~~-----------~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.||++|..|++.|.+.. .++..+..+.+ + .....+ ..+.+.. + +++ .+.++|+||.|
T Consensus 14 GATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~--~-~~~----~~~~vDvvf~a 86 (359)
T 4dpl_A 14 GATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP--T-DPK----LMDDVDIIFSP 86 (359)
T ss_dssp TTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE--C-CGG----GCTTCCEEEEC
T ss_pred CCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEe--C-CHH----HhcCCCEEEEC
Confidence 359999999999776653 56776654332 1 222111 0122211 1 222 24689999999
Q ss_pred CCCch----hhhhhhcCCCeEEEecee
Q 028525 73 SEGFI----SNAGSLKGVQHVILLSQL 95 (208)
Q Consensus 73 ~~~~~----~~a~~~~gv~~~v~~Ss~ 95 (208)
.+... ...+..+|+ ++|-+|+.
T Consensus 87 ~p~~~s~~~a~~~~~~G~-~vIDlSa~ 112 (359)
T 4dpl_A 87 LPQGAAGPVEEQFAKEGF-PVISNSPD 112 (359)
T ss_dssp CCTTTHHHHHHHHHHTTC-EEEECSST
T ss_pred CChHHHHHHHHHHHHCCC-EEEEcCCC
Confidence 55432 233445677 45666654
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=94.06 E-value=0.059 Score=40.88 Aligned_cols=61 Identities=18% Similarity=0.060 Sum_probs=40.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|.+|+.++..|++.|++|+++.|+.++..+. ++..-.+...|+ +++.+ .++|+||++++
T Consensus 126 GaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~---~~~~~--~~~DivVn~t~ 189 (271)
T 1nyt_A 126 GAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSM---DELEG--HEFDLIINATS 189 (271)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCS---GGGTT--CCCSEEEECCS
T ss_pred CCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecH---HHhcc--CCCCEEEECCC
Confidence 578899999999999999999999998764322 111001222333 22222 57999998844
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.078 Score=42.31 Aligned_cols=87 Identities=15% Similarity=0.018 Sum_probs=48.0
Q ss_pred chhhh--ccccCccHHHHHHHHH-hCC---CcEEEEEcCch-h-hhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 2 GPMKK--MKRKKMNFRMVILSLI-VKR---TRIKALVKDKR-N-AMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 2 ~~~~~--~~~~G~iG~~l~~~Ll-~~g---~~V~~~~R~~~-~-~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
|+|++ .+.||++|+.|+++|| ++. .++..++-+.. + .....+. +...-++++++. +.++|+||.|+
T Consensus 3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~--~~~v~~~~~~~~----~~~vDvvf~a~ 76 (377)
T 3uw3_A 3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGKAPSFAKN--ETTLKDATSIDD----LKKCDVIITCQ 76 (377)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTTSBCCTTCCS--CCBCEETTCHHH----HHTCSEEEECS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcCCCHHHcCCC--ceEEEeCCChhH----hcCCCEEEECC
Confidence 45654 3679999999999454 444 34555543211 1 1222111 122224445443 56899999996
Q ss_pred CCch----hhhhhhcCCC-eEEEece
Q 028525 74 EGFI----SNAGSLKGVQ-HVILLSQ 94 (208)
Q Consensus 74 ~~~~----~~a~~~~gv~-~~v~~Ss 94 (208)
+... ...+.++|++ ++|=.|+
T Consensus 77 ~~~~s~~~~~~~~~~G~k~~VID~ss 102 (377)
T 3uw3_A 77 GGDYTNDVFPKLRAAGWNGYWIDAAS 102 (377)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred ChHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 6432 2334567875 5555554
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.05 Score=44.13 Aligned_cols=57 Identities=9% Similarity=-0.020 Sum_probs=43.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+-|.||+.+++.|...|.+|++..+++.+.......++++. ++.++++++|+|+.+.
T Consensus 218 G~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~--------sL~eal~~ADVVilt~ 274 (436)
T 3h9u_A 218 GYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVL--------LVEDVVEEAHIFVTTT 274 (436)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC--------CHHHHTTTCSEEEECS
T ss_pred eeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeec--------CHHHHHhhCCEEEECC
Confidence 69999999999999999999999998766432222334432 4667899999999873
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.013 Score=47.30 Aligned_cols=64 Identities=6% Similarity=-0.141 Sum_probs=41.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEE-----------cCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMA-----------GDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~-----------~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|.+|..++..|.+ ||+|++++|++++...+...+..+.. +.+.-..+..++++++|+||.+
T Consensus 6 IG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvviia 80 (402)
T 1dlj_A 6 AGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVIIA 80 (402)
T ss_dssp ECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEEC
T ss_pred ECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEEe
Confidence 4789999999999998 99999999998875444322221100 0011011233466789999988
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.036 Score=43.53 Aligned_cols=55 Identities=9% Similarity=0.016 Sum_probs=40.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.+++.|...|++|++++|++++... ...++.. .+ +.++++++|+|+.+
T Consensus 153 G~G~iG~~vA~~l~~~G~~V~~~d~~~~~~~~-~~~g~~~-----~~---l~e~l~~aDiVil~ 207 (333)
T 2d0i_A 153 GMGAIGKAIARRLIPFGVKLYYWSRHRKVNVE-KELKARY-----MD---IDELLEKSDIVILA 207 (333)
T ss_dssp CCSHHHHHHHHHHGGGTCEEEEECSSCCHHHH-HHHTEEE-----CC---HHHHHHHCSEEEEC
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCcchhhh-hhcCcee-----cC---HHHHHhhCCEEEEc
Confidence 69999999999999999999999998765211 1112332 13 34567789999977
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.079 Score=41.91 Aligned_cols=85 Identities=12% Similarity=0.055 Sum_probs=51.7
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCC--H-HHHHHHh-cCCCEEEEcCCCchhh----h
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASN--K-KFLKTAL-RGVRSIICPSEGFISN----A 80 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d--~-~~l~~~~-~~~d~vi~~~~~~~~~----a 80 (208)
.+|.+|..+++.+...|++|++++|++++......-+.+.+ .|..+ . +.+.+.. .++|+||.+.++.... .
T Consensus 172 a~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~-~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~ 250 (362)
T 2c0c_A 172 AAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRP-INYKTEPVGTVLKQEYPEGVDVVYESVGGAMFDLAVDA 250 (362)
T ss_dssp TTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEE-EETTTSCHHHHHHHHCTTCEEEEEECSCTHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEE-EecCChhHHHHHHHhcCCCCCEEEECCCHHHHHHHHHH
Confidence 48999999999999999999999998766432211223322 24433 2 2222222 2589999885543222 2
Q ss_pred hhhcCCCeEEEeceee
Q 028525 81 GSLKGVQHVILLSQLS 96 (208)
Q Consensus 81 ~~~~gv~~~v~~Ss~~ 96 (208)
++..| +++.+++..
T Consensus 251 l~~~G--~iv~~g~~~ 264 (362)
T 2c0c_A 251 LATKG--RLIVIGFIS 264 (362)
T ss_dssp EEEEE--EEEECCCGG
T ss_pred HhcCC--EEEEEeCCC
Confidence 22333 788887654
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.11 Score=42.93 Aligned_cols=79 Identities=8% Similarity=-0.029 Sum_probs=51.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC--Cchh-hhhhhcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE--GFIS-NAGSLKG 85 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~--~~~~-~a~~~~g 85 (208)
+.|.||+.+++.|...|++|++++|++.+.......++++ .+. .+++.++|+||.+.+ ..+. ..++...
T Consensus 281 G~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-----~~l---~e~l~~aDvVi~atgt~~~i~~~~l~~mk 352 (494)
T 3ce6_A 281 GYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-----VTV---EEAIGDADIVVTATGNKDIIMLEHIKAMK 352 (494)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-----CCH---HHHGGGCSEEEECSSSSCSBCHHHHHHSC
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-----ecH---HHHHhCCCEEEECCCCHHHHHHHHHHhcC
Confidence 5899999999999999999999999887743222234442 232 346789999998733 2222 2333322
Q ss_pred -CCeEEEecee
Q 028525 86 -VQHVILLSQL 95 (208)
Q Consensus 86 -v~~~v~~Ss~ 95 (208)
-.+++.++..
T Consensus 353 ~ggilvnvG~~ 363 (494)
T 3ce6_A 353 DHAILGNIGHF 363 (494)
T ss_dssp TTCEEEECSSS
T ss_pred CCcEEEEeCCC
Confidence 2366666653
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.075 Score=40.65 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=42.5
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|..|+.++..|.+.|. +|+++.|+.+++.++.. .+..+ + .+++.+ + ++|+||+++
T Consensus 129 GaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~-~~~~~--~---~~~l~~-l-~~DivInaT 186 (282)
T 3fbt_A 129 GSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYG-EFKVI--S---YDELSN-L-KGDVIINCT 186 (282)
T ss_dssp CSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCT-TSEEE--E---HHHHTT-C-CCSEEEECS
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-hcCcc--c---HHHHHh-c-cCCEEEECC
Confidence 689999999999999997 89999999988765432 34322 2 233334 4 799999883
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.022 Score=44.59 Aligned_cols=32 Identities=6% Similarity=-0.180 Sum_probs=28.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM 39 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~ 39 (208)
.+.|.+|+.++..|++.||+|++++|++++..
T Consensus 20 IG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~ 51 (335)
T 1z82_A 20 LGAGSWGTVFAQMLHENGEEVILWARRKEIVD 51 (335)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSSHHHHH
T ss_pred ECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 47999999999999999999999999877643
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.041 Score=43.77 Aligned_cols=77 Identities=18% Similarity=0.119 Sum_probs=42.7
Q ss_pred cccCccHHHHHHHHHh-CCC---cEEEEEcCch-hhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----hh
Q 028525 8 KRKKMNFRMVILSLIV-KRT---RIKALVKDKR-NAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF----IS 78 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~-~g~---~V~~~~R~~~-~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~----~~ 78 (208)
+.||++|+.|++.|++ +++ +++.+..+.. +....+. +.++...+..|++. +.++|+||.|++.. ..
T Consensus 8 GAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~-g~~i~~~~~~~~~~----~~~~DvVf~a~g~~~s~~~a 82 (367)
T 1t4b_A 8 GWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFG-GTTGTLQDAFDLEA----LKALDIIVTCQGGDYTNEIY 82 (367)
T ss_dssp STTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGG-TCCCBCEETTCHHH----HHTCSEEEECSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccC-CCceEEEecCChHH----hcCCCEEEECCCchhHHHHH
Confidence 4599999999995555 444 3445544311 1110011 12333345555554 35899999986643 23
Q ss_pred hhhhhcCCCeE
Q 028525 79 NAGSLKGVQHV 89 (208)
Q Consensus 79 ~a~~~~gv~~~ 89 (208)
..+.++|++.+
T Consensus 83 ~~~~~~G~k~v 93 (367)
T 1t4b_A 83 PKLRESGWQGY 93 (367)
T ss_dssp HHHHHTTCCCE
T ss_pred HHHHHCCCCEE
Confidence 44556788543
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.047 Score=43.04 Aligned_cols=86 Identities=7% Similarity=-0.161 Sum_probs=51.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCH---HHHHHHhc--CCCEEEEcCCCchh-hhhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNK---KFLKTALR--GVRSIICPSEGFIS-NAGS 82 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~---~~l~~~~~--~~d~vi~~~~~~~~-~a~~ 82 (208)
.+|.+|..+++.+...|++|++++|++++......-+... ..|..+. +.+.+... ++|++|.++++... .+.+
T Consensus 171 a~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~~~~~~~~~ 249 (354)
T 2j8z_A 171 GLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAA-GFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVN 249 (354)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSE-EEETTTSCHHHHHHHHTTTSCEEEEEESSCGGGHHHHHH
T ss_pred CccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcE-EEecCChHHHHHHHHHhcCCCceEEEECCCchHHHHHHH
Confidence 4789999999999999999999999887643221112222 2355443 33444443 58999988554322 2222
Q ss_pred hc-CCCeEEEecee
Q 028525 83 LK-GVQHVILLSQL 95 (208)
Q Consensus 83 ~~-gv~~~v~~Ss~ 95 (208)
.. .-.+++.++..
T Consensus 250 ~l~~~G~iv~~G~~ 263 (354)
T 2j8z_A 250 CLALDGRWVLYGLM 263 (354)
T ss_dssp HEEEEEEEEECCCT
T ss_pred hccCCCEEEEEecc
Confidence 11 11367776643
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.068 Score=42.71 Aligned_cols=81 Identities=11% Similarity=-0.017 Sum_probs=44.0
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEE--cCc-hh-hhhhcC-----------CceEEEEcCCCCHHHHHHHhcCCCEEEE
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALV--KDK-RN-AMESFG-----------TYVESMAGDASNKKFLKTALRGVRSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~--R~~-~~-~~~~~~-----------~~v~~v~~Dl~d~~~l~~~~~~~d~vi~ 71 (208)
+.||++|..+++.|.++. .++..+. ++. .+ ..+..+ ..+.+...|-. + .+.++|+||.
T Consensus 26 GAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~--~----~~~~~Dvvf~ 99 (381)
T 3hsk_A 26 GATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPE--G----NFLECDVVFS 99 (381)
T ss_dssp TTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSC--T----TGGGCSEEEE
T ss_pred CCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchh--h----hcccCCEEEE
Confidence 469999999999777654 4676553 321 12 221110 11222222211 1 2578999999
Q ss_pred cCCCc----hhhhhhhcCCCeEEEecee
Q 028525 72 PSEGF----ISNAGSLKGVQHVILLSQL 95 (208)
Q Consensus 72 ~~~~~----~~~a~~~~gv~~~v~~Ss~ 95 (208)
|.+.. ....+..+|++ +|-.|+.
T Consensus 100 alp~~~s~~~~~~~~~~G~~-VIDlSa~ 126 (381)
T 3hsk_A 100 GLDADVAGDIEKSFVEAGLA-VVSNAKN 126 (381)
T ss_dssp CCCHHHHHHHHHHHHHTTCE-EEECCST
T ss_pred CCChhHHHHHHHHHHhCCCE-EEEcCCc
Confidence 96643 23334456774 5566653
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.026 Score=43.46 Aligned_cols=58 Identities=3% Similarity=-0.024 Sum_probs=41.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCC-------ceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGT-------YVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~-------~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.++..|+ .||+|++++|++++....... ++.+. .|+ + .++++|.||.+.+
T Consensus 18 IG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~-~~~---~----~~~~aDlVieavp 82 (293)
T 1zej_A 18 IGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFT-TTL---E----KVKDCDIVMEAVF 82 (293)
T ss_dssp ECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEE-SSC---T----TGGGCSEEEECCC
T ss_pred EeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEe-CCH---H----HHcCCCEEEEcCc
Confidence 369999999999999 999999999998774332211 23322 233 2 2678999998844
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 208 | ||||
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 3e-05 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 6e-05 |
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 3e-05
Identities = 21/176 (11%), Positives = 46/176 (26%), Gaps = 16/176 (9%)
Query: 15 RMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIIC--- 71
+ + + LV+D + GD + + G ++I
Sbjct: 17 LTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76
Query: 72 ---PSEGFISN---------AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQD 119
A GV V+ + + + ++
Sbjct: 77 TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRM- 135
Query: 120 ESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALES 175
+L SG+ Y + + + P +G + +SK D + L +
Sbjct: 136 HKVLRESGLKYVAVMPPHIGDQPLTGAYTVTLDGRGPSRVISKHDLGHFMLRCLTT 191
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 40.6 bits (93), Expect = 6e-05
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 129 PYTIIRTGVLQNTPGGKQGFQFEEG----CAANGSLSKEDAAFICVEALESIPQTGLIFE 184
PYTIIR G L + GG + + ++ + D A +C++AL F+
Sbjct: 167 PYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFD 226
Query: 185 VVNGEE----KVSDWKKCFSRLMEK 205
+ + E D+K FS++ +
Sbjct: 227 LGSKPEGTSTPTKDFKALFSQVTSR 251
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 208 | |||
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.98 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.93 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.91 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.91 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.91 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.89 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 99.89 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.88 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.88 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.87 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.87 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.87 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.86 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.85 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.85 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.84 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.84 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.84 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.82 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.82 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.82 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.81 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.79 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.78 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.78 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.75 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.72 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.64 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.61 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.58 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 99.51 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.5 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.48 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.48 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.48 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.46 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.44 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.44 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.42 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.41 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.4 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.4 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.4 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.4 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.4 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.39 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.39 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.39 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.38 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.38 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.37 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.36 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.35 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.35 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.35 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.34 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.34 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.34 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.31 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.31 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.31 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.31 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.31 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.27 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.27 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.26 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.25 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.23 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.22 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.22 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.21 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.17 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.16 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.15 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.14 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.14 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.13 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.12 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.1 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.01 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 98.98 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 98.97 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 98.94 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 98.87 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 98.87 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 98.85 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 98.83 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 98.82 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 98.8 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 98.79 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 98.74 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 98.73 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 98.65 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.6 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.57 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.36 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 98.31 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 97.92 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.78 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.77 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 97.64 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.54 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.51 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.36 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.29 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.28 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 97.25 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 97.24 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.17 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 97.02 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 97.02 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.9 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 96.81 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.73 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 96.51 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.48 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.46 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.46 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.41 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.21 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.12 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 96.0 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 95.94 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 95.88 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 95.87 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 95.81 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.79 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.75 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 95.7 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.52 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.49 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 95.49 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.49 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.27 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.19 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.17 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.05 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 94.65 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.53 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 94.49 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.47 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 94.45 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.4 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.92 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.84 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.62 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.46 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.36 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 93.29 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 93.14 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 92.88 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 92.77 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 92.77 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 92.66 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 92.61 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 92.5 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 92.48 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 92.43 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.43 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 92.35 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 92.09 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 92.06 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 91.82 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 91.67 | |
| d1xk7a1 | 402 | Crotonobetainyl-CoA:carnitine CoA-transferase, Cai | 91.57 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 91.44 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 91.03 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 90.92 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 90.73 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 90.68 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 90.37 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 90.36 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 90.19 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 90.16 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 90.03 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 90.03 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.86 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 89.72 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 89.71 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 89.69 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.67 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 89.5 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 89.34 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 89.14 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 88.93 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 88.73 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 88.04 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 87.97 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 87.87 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 87.71 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 87.43 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 87.13 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 87.1 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 86.86 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 86.81 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 86.71 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 86.1 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 86.08 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 85.48 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 85.22 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 85.11 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 85.03 | |
| d1x74a1 | 359 | 2-methylacyl-CoA racemase Mcr {Mycobacterium tuber | 84.62 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 83.84 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 83.76 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 83.56 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 83.48 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 83.17 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 83.15 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 83.07 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 83.06 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 82.97 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 82.86 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 82.7 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 82.23 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 82.13 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 81.94 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 81.52 | |
| d2vjma1 | 427 | Formyl-CoA transferase {Oxalobacter formigenes [Ta | 81.3 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 81.22 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.64 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 80.37 |
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2.2e-31 Score=196.31 Aligned_cols=178 Identities=13% Similarity=0.086 Sum_probs=143.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC------------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG------------ 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~------------ 75 (208)
++||+||++++++|+++||+|++++|++++.......+++++.+|++|++++.++++++|+||++.+.
T Consensus 10 GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~~~~~~~~~~~~ 89 (205)
T d1hdoa_ 10 GATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSE 89 (205)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTCCSCCCHHHH
T ss_pred CCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEeccCCchhhhhhhHH
Confidence 57999999999999999999999999999876666678999999999999999999999999987321
Q ss_pred ---chhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCCccceeeec
Q 028525 76 ---FISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEE 152 (208)
Q Consensus 76 ---~~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~ 152 (208)
.+.+++++++++|||++||.+++.......+... .....+..+|+++++++++||+|||+.+.+.+..+.......
T Consensus 90 ~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~~~~~~~-~~~~~~~~~e~~l~~~~~~~tiirp~~~~~~~~~~~~~~~~~ 168 (205)
T d1hdoa_ 90 GARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQ-AVTDDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGAYTVTLD 168 (205)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSCGGGH-HHHHHHHHHHHHHHHTCSEEEEECCSEEECCCCCSCCEEESS
T ss_pred HHHHHHHHHHhcCCCeEEEEeeeeccCCCcccccccc-ccchHHHHHHHHHHhcCCceEEEecceecCCCCcccEEEeeC
Confidence 1456788899999999999887754332222221 122233357899999999999999999998777665444444
Q ss_pred CCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEe
Q 028525 153 GCAANGSLSKEDAAFICVEALESIPQTGLIFEVV 186 (208)
Q Consensus 153 ~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~ 186 (208)
+.....+++++|+|++++.++++++..|+.+.+.
T Consensus 169 ~~~~~~~i~~~DvA~~~~~~l~~~~~~g~~~~~s 202 (205)
T d1hdoa_ 169 GRGPSRVISKHDLGHFMLRCLTTDEYDGHSTYPS 202 (205)
T ss_dssp SCSSCSEEEHHHHHHHHHHTTSCSTTTTCEEEEE
T ss_pred CCCCCCcCCHHHHHHHHHHHhCCCCCCCEEEecC
Confidence 5556788999999999999999999889988876
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.93 E-value=1.3e-24 Score=162.61 Aligned_cols=200 Identities=21% Similarity=0.331 Sum_probs=145.1
Q ss_pred hhccccCccHHHHHHHHHhCCCc--EEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC-c-----
Q 028525 5 KKMKRKKMNFRMVILSLIVKRTR--IKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG-F----- 76 (208)
Q Consensus 5 ~~~~~~G~iG~~l~~~Ll~~g~~--V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~-~----- 76 (208)
.+-++||+||+++++.|+++||+ |+.++|++++.... ..+++++.+|++|.+++.++++++|+||++.+. .
T Consensus 7 lVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~ 85 (252)
T d2q46a1 7 LVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTSAVPKMKPG 85 (252)
T ss_dssp EEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCCCEECTT
T ss_pred EEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc-cCCcEEEEeeeccccccccccccceeeEEEEeeccccccc
Confidence 34468999999999999999976 55677888775543 457999999999999999999999999987210 0
Q ss_pred -----------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcC
Q 028525 77 -----------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASG 127 (208)
Q Consensus 77 -----------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~ 127 (208)
+...+.....+++.+.|+...+.+..+...+............+.+...++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (252)
T d2q46a1 86 FDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSG 165 (252)
T ss_dssp CCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTCGGGGGGGCCHHHHHHHHHHHHHHSS
T ss_pred cchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCCCcccccccccchhhhhhhhhhhhhccc
Confidence 012234567788888888776654433333322222222223456677799
Q ss_pred CCEEEEeccccccCCCCccceeeecC----CcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC----cchhhHHHHH
Q 028525 128 IPYTIIRTGVLQNTPGGKQGFQFEEG----CAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE----EKVSDWKKCF 199 (208)
Q Consensus 128 ~~~tivRp~~~~~~~~~~~~~~~~~~----~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~----~~~~e~~~~~ 199 (208)
++++++||+.+++............. ....++++++|+|++++.+++++...|++||+++++ .+.+|+.++|
T Consensus 166 ~~~~ilRp~~v~g~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~a~~~~l~~~~~~g~~~~i~~~~~~~~~~~~~~~~lf 245 (252)
T d2q46a1 166 TPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALF 245 (252)
T ss_dssp SCEEEEEECEEECSCTTSSCEEEESTTGGGGSSCCEEEHHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHH
T ss_pred ccceeecceEEECCCcchhhhhhccCcccccCCCCeEEHHHHHHHHHHHhCCccccCcEEEEeeCCCCCChhHHHHHHHH
Confidence 99999999999886544332322222 233678999999999999999998889999999754 2688999999
Q ss_pred HHHhhh
Q 028525 200 SRLMEK 205 (208)
Q Consensus 200 ~~~~~~ 205 (208)
.+++++
T Consensus 246 ~~i~~r 251 (252)
T d2q46a1 246 SQVTSR 251 (252)
T ss_dssp TTCCCC
T ss_pred HHHHhc
Confidence 887764
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.91 E-value=2.9e-23 Score=164.62 Aligned_cols=196 Identities=13% Similarity=-0.005 Sum_probs=141.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC--Cc---------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE--GF--------- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~--~~--------- 76 (208)
++||+||++|+++|+++||+|++++|.............++..+|+.|.+.+.++++++|+||+++. ..
T Consensus 22 GgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~ 101 (363)
T d2c5aa1 22 GAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHS 101 (363)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCCCCCHHHHTTCHH
T ss_pred CCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecccccccccccccccc
Confidence 4699999999999999999999998765543222224568889999999999999999999998721 10
Q ss_pred ------------hhhhhhhcCCCeEEEeceeeeccCC------------------CCcccccchhHHHhHHH-HHHHHHh
Q 028525 77 ------------ISNAGSLKGVQHVILLSQLSVYRGS------------------GGIQALMKGNARKLAEQ-DESMLMA 125 (208)
Q Consensus 77 ------------~~~a~~~~gv~~~v~~Ss~~~~~~~------------------~~~~~~~~~~~~~~~~~-~e~~l~~ 125 (208)
+.+++.+.+++|||++||..+++.. .|..+|.. .|..++. ++.+.+.
T Consensus 102 ~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~--sK~~~E~~~~~~~~~ 179 (363)
T d2c5aa1 102 VIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGL--EKLATEELCKHYNKD 179 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHH--HHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCHHHH--HHHHHHHHHHHHHHH
Confidence 2456778999999999999887621 11122322 3333221 2333345
Q ss_pred cCCCEEEEeccccccCCCCc--------------------cceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEE
Q 028525 126 SGIPYTIIRTGVLQNTPGGK--------------------QGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEV 185 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~--------------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i 185 (208)
.+++++++||+.+++..... ....++.+.+...+++.+|+++++..+++.+ .++.||+
T Consensus 180 ~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~~~~~~~--~~~~~ni 257 (363)
T d2c5aa1 180 FGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD--FREPVNI 257 (363)
T ss_dssp HCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSS--CCSCEEE
T ss_pred hCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhHHHHHHHHHHhCC--CCCeEEE
Confidence 69999999999998643211 1112233344567899999999999988754 4678999
Q ss_pred eeCCc-chhhHHHHHHHHhhhcC
Q 028525 186 VNGEE-KVSDWKKCFSRLMEKTG 207 (208)
Q Consensus 186 ~~~~~-~~~e~~~~~~~~~~~~~ 207 (208)
+++.. +..|+++.+.+++++..
T Consensus 258 ~~~~~~s~~~l~~~i~~~~g~~~ 280 (363)
T d2c5aa1 258 GSDEMVSMNEMAEMVLSFEEKKL 280 (363)
T ss_dssp CCCCCEEHHHHHHHHHHTTTCCC
T ss_pred ecCCcccHHHHHHHHHHHhCCCC
Confidence 98775 99999999999988753
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.3e-23 Score=166.57 Aligned_cols=197 Identities=11% Similarity=-0.011 Sum_probs=135.1
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhh-----------hhhcCCceEEEEcCCCCHHHHHHHhcCC--CEEEEcC
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNA-----------MESFGTYVESMAGDASNKKFLKTALRGV--RSIICPS 73 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-----------~~~~~~~v~~v~~Dl~d~~~l~~~~~~~--d~vi~~~ 73 (208)
-++||+||++|+++|+++||+|++++|..+.. ......+++++++|++|.+++.++++++ |+||+++
T Consensus 7 TGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v~h~a 86 (357)
T d1db3a_ 7 TGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNLG 86 (357)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSEEEECC
T ss_pred eCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCEEEEee
Confidence 36799999999999999999999999965421 1112347899999999999999999854 9999872
Q ss_pred C----Cc------------------hhhhhhhcCC---CeEEEeceeeeccCC--------CCcccccchh-HHHhHH-H
Q 028525 74 E----GF------------------ISNAGSLKGV---QHVILLSQLSVYRGS--------GGIQALMKGN-ARKLAE-Q 118 (208)
Q Consensus 74 ~----~~------------------~~~a~~~~gv---~~~v~~Ss~~~~~~~--------~~~~~~~~~~-~~~~~~-~ 118 (208)
+ +. +.+++++.++ +||||+||..+|+.+ .+..|...|. .|..++ .
T Consensus 87 a~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~~P~~~Y~~sK~~~E~~ 166 (357)
T d1db3a_ 87 AMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWI 166 (357)
T ss_dssp CCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred cccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCCCCCCChHHHHHHHHHHH
Confidence 1 10 2355666655 479999999988521 1222322221 333332 1
Q ss_pred HHHHHHhcCCCEEEEeccccccCCCCc-------------------cceeeecCCcCCCcccHHHHHHHHHHHhhCCCCC
Q 028525 119 DESMLMASGIPYTIIRTGVLQNTPGGK-------------------QGFQFEEGCAANGSLSKEDAAFICVEALESIPQT 179 (208)
Q Consensus 119 ~e~~l~~~~~~~tivRp~~~~~~~~~~-------------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~ 179 (208)
++.+.+..+++++++||+.+++..... ..+.++.+.+...+++++|+++++..+++.+ .
T Consensus 167 ~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~~~~~~--~ 244 (357)
T d1db3a_ 167 TVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQE--Q 244 (357)
T ss_dssp HHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSS--S
T ss_pred HHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHHHHHHHhCC--C
Confidence 333334569999999999887642110 1122333444467899999999999998764 4
Q ss_pred CcEEEEeeCCc-chhhHHHHHHHHhhh
Q 028525 180 GLIFEVVNGEE-KVSDWKKCFSRLMEK 205 (208)
Q Consensus 180 ~~~~~i~~~~~-~~~e~~~~~~~~~~~ 205 (208)
++.||++++.. +++|+++.+.+.++.
T Consensus 245 ~~~yni~sg~~~s~~~~~~~~~~~~g~ 271 (357)
T d1db3a_ 245 PEDFVIATGVQYSVRQFVEMAAAQLGI 271 (357)
T ss_dssp CCCEEECCCCCEEHHHHHHHHHHTTTE
T ss_pred CCeEEECCCCceehHHHHHHHHHHhCC
Confidence 57899998775 999999999998874
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.91 E-value=2.2e-23 Score=161.29 Aligned_cols=199 Identities=12% Similarity=0.072 Sum_probs=144.1
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchh--------hhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC-C--
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRN--------AMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE-G-- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~--------~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~-~-- 75 (208)
-++||+||++|+++|+++||+|++++|+... .......+++++.+|+.|.+.+.+++.++++++++.+ .
T Consensus 9 tGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~~~~~~ 88 (312)
T d1qyda_ 9 VGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISALAGGVL 88 (312)
T ss_dssp ESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECCCCSSS
T ss_pred ECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhhhhccc
Confidence 3579999999999999999999999997643 1122346799999999999999999999999997622 1
Q ss_pred --------chhhhhhhcCCCeEEEeceeeeccCCC--CcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCC-
Q 028525 76 --------FISNAGSLKGVQHVILLSQLSVYRGSG--GIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGG- 144 (208)
Q Consensus 76 --------~~~~a~~~~gv~~~v~~Ss~~~~~~~~--~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~- 144 (208)
....++...+..++++.||.+++.... +..+... .....+.++++.+..+++|+++||+.+++....
T Consensus 89 ~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~r~~~~~g~~~~~ 166 (312)
T d1qyda_ 89 SHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIMEHALQPGSI--TFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGS 166 (312)
T ss_dssp STTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTSCCCCCSSTTH--HHHHHHHHHHHHHHTTCCBCEEECCEEHHHHTTT
T ss_pred ccchhhhhHHHHHHHHhcCCcEEEEeeccccCCCcccccchhhh--hhHHHHHHHHhhcccccceEEeccceeecCCccc
Confidence 134566777777778888887765321 1222211 112223567788889999999999998763110
Q ss_pred ------------ccceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEE-EeeCC-cchhhHHHHHHHHhhhcC
Q 028525 145 ------------KQGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFE-VVNGE-EKVSDWKKCFSRLMEKTG 207 (208)
Q Consensus 145 ------------~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~-i~~~~-~~~~e~~~~~~~~~~~~~ 207 (208)
.....++.++....+++++|+|++++.++.++...++.++ +.++. .|.+|+++.++++++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~ 243 (312)
T d1qyda_ 167 LAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNL 243 (312)
T ss_dssp SSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCC
T ss_pred hhhHHHHhhhcccccccccccccccceeeHHHHHHHHHHHhcCccccCceEEEeCCCcCCCHHHHHHHHHHHHCCCC
Confidence 1111233444556789999999999999999888777755 44444 489999999999998763
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.89 E-value=1.2e-22 Score=156.34 Aligned_cols=200 Identities=14% Similarity=0.092 Sum_probs=146.6
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhh---------hhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC--
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNA---------MESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG-- 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~---------~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~-- 75 (208)
-++||+||++|+++|+++||+|++++|+.+.. ......+++++.+|+.+...+.+.+++++.++++...
T Consensus 9 tGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~~~~~~~ 88 (307)
T d1qyca_ 9 IGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVISTVGSLQ 88 (307)
T ss_dssp ESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEECCCGGG
T ss_pred ECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeeecccccc
Confidence 36799999999999999999999999986542 1223457899999999999999999999999987332
Q ss_pred -----chhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCC-------
Q 028525 76 -----FISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPG------- 143 (208)
Q Consensus 76 -----~~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~------- 143 (208)
...+++...+++++++.|+.+......+...+.... .......+.++++.+++++++||+.+++...
T Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~r~~~v~g~~~~~~~~~~ 167 (307)
T d1qyca_ 89 IESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSV-FEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAG 167 (307)
T ss_dssp SGGGHHHHHHHHHHCCCSEEECSCCSSCTTSCCCCTTHHHH-HHHHHHHHHHHHHHTCCBEEEECCEEHHHHTTTTTCTT
T ss_pred cchhhHHHHHHHHhccccceeeecccccccccccccccccc-ccccccccchhhccCCCceecccceecCCCccchhhhh
Confidence 145667788898999999876654332222222111 1122246778888999999999999885311
Q ss_pred ----Cc-cceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEE-eeCC-cchhhHHHHHHHHhhhcC
Q 028525 144 ----GK-QGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEV-VNGE-EKVSDWKKCFSRLMEKTG 207 (208)
Q Consensus 144 ----~~-~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i-~~~~-~~~~e~~~~~~~~~~~~~ 207 (208)
.. ....++.+.....+++++|+|++++.+++++...++.+++ +++. .|..|+++.+++++|++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~~~ 238 (307)
T d1qyca_ 168 LTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTL 238 (307)
T ss_dssp CSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCC
T ss_pred hhhhhcccceeeecccccccCCcHHHHHHHHHHHhcChhhcCceeEEeCCCCccCHHHHHHHHHHHHCCCC
Confidence 01 1122334455577899999999999999988877776554 4444 489999999999998763
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.89 E-value=4e-22 Score=155.67 Aligned_cols=199 Identities=14% Similarity=0.099 Sum_probs=139.7
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEc------Cc-----hhhhh-hcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC-
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVK------DK-----RNAME-SFGTYVESMAGDASNKKFLKTALRGVRSIICPS- 73 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R------~~-----~~~~~-~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~- 73 (208)
.++||+||++|+++|+++||+|.+..| .. ..... ....+++++.+|+.+...+.....+.|.|++++
T Consensus 6 tG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~ 85 (322)
T d1r6da_ 6 TGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAIVHFAA 85 (322)
T ss_dssp ETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEEEECCS
T ss_pred ECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceEEeecc
Confidence 468999999999999999987655432 11 11111 123479999999999999999999999999772
Q ss_pred CC-c--------------------hhhhhhhcCCCeEEEeceeeeccCC--------CCcccccch-hHHHhHHH-HHHH
Q 028525 74 EG-F--------------------ISNAGSLKGVQHVILLSQLSVYRGS--------GGIQALMKG-NARKLAEQ-DESM 122 (208)
Q Consensus 74 ~~-~--------------------~~~a~~~~gv~~~v~~Ss~~~~~~~--------~~~~~~~~~-~~~~~~~~-~e~~ 122 (208)
.. . +.+++.+.++++|||+||..+|+.. .+..|...+ ..|...+. +..+
T Consensus 86 ~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~ 165 (322)
T d1r6da_ 86 ESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAY 165 (322)
T ss_dssp CCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred cccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 21 1 2456777899999999999998632 122222222 13333321 2233
Q ss_pred HHhcCCCEEEEeccccccCCCCc--------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEee
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGK--------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVN 187 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~--------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~ 187 (208)
.++++++++++||+.+++..... ..+. ++.+.+...++|++|+|+++..+++++. .++.||+++
T Consensus 166 ~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~~~~~-~~~~~ni~~ 244 (322)
T d1r6da_ 166 HRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGR-AGEIYHIGG 244 (322)
T ss_dssp HHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC-TTCEEEECC
T ss_pred HHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHHhCCC-CCCeeEEee
Confidence 34579999999999998743211 1122 2344455678999999999999998765 468999998
Q ss_pred CCc-chhhHHHHHHHHhhhc
Q 028525 188 GEE-KVSDWKKCFSRLMEKT 206 (208)
Q Consensus 188 ~~~-~~~e~~~~~~~~~~~~ 206 (208)
+.. +..|+++.+.+..+.+
T Consensus 245 ~~~~s~~e~~~~i~~~~~~~ 264 (322)
T d1r6da_ 245 GLELTNRELTGILLDSLGAD 264 (322)
T ss_dssp CCEEEHHHHHHHHHHHHTCC
T ss_pred cccchhHHHHHHHHHHhCCC
Confidence 775 9999999999998764
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.3e-22 Score=151.69 Aligned_cols=172 Identities=13% Similarity=0.093 Sum_probs=126.7
Q ss_pred cccCccHHHHHHHHHhCC--CcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc---------
Q 028525 8 KRKKMNFRMVILSLIVKR--TRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF--------- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~--------- 76 (208)
++||+||++|+++|+++| ++|++++|++.+.......+++...+|+++.+++.++++++|++|++.+..
T Consensus 21 GaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~ 100 (232)
T d2bkaa1 21 GASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGF 100 (232)
T ss_dssp CTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccccccccchhhh
Confidence 469999999999999999 489999998876544444578999999999999999999999999884321
Q ss_pred ----------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCC-EEEEeccccccCCCCc
Q 028525 77 ----------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIP-YTIIRTGVLQNTPGGK 145 (208)
Q Consensus 77 ----------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~-~tivRp~~~~~~~~~~ 145 (208)
+.+++.+.++++||++|+.+++... ..+|.. .| ..+|+++++.+++ ++|+||+.+++.....
T Consensus 101 ~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~~~--~~~Y~~--~K---~~~E~~l~~~~~~~~~IlRP~~i~G~~~~~ 173 (232)
T d2bkaa1 101 VRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSS--NFLYLQ--VK---GEVEAKVEELKFDRYSVFRPGVLLCDRQES 173 (232)
T ss_dssp HHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTTC--SSHHHH--HH---HHHHHHHHTTCCSEEEEEECCEEECTTGGG
T ss_pred hhhcccccceeeecccccCccccccCCccccccCc--cchhHH--HH---HHhhhccccccccceEEecCceeecCCCcC
Confidence 2456778999999999999887533 233432 22 2578999998886 9999999998754322
Q ss_pred cce--------e-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEee
Q 028525 146 QGF--------Q-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVN 187 (208)
Q Consensus 146 ~~~--------~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~ 187 (208)
... . +........+++++|+|++++.++.++.. ++.+.+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~I~~~dvA~a~i~~~~~~~~-~~~~i~~~ 223 (232)
T d2bkaa1 174 RPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRD-KQMELLEN 223 (232)
T ss_dssp SHHHHHHHHHHCSCCTTGGGGTEEEHHHHHHHHHHHHTSCCC-SSEEEEEH
T ss_pred cHHHHHHHHHhhccCCcccCCCeEEHHHHHHHHHHHHhcCcc-CCeEEEcH
Confidence 110 0 11112234568999999999999877664 45555553
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1.6e-21 Score=153.15 Aligned_cols=195 Identities=16% Similarity=0.125 Sum_probs=135.6
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchh-------hhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCC--C
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRN-------AMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSE--G 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-------~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~--~ 75 (208)
-++||+||++|+++|+++||+|++++|.... .......+++++++|++|.+.+.++++ ++|+|||+++ .
T Consensus 6 tG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHlAa~~~ 85 (338)
T d1udca_ 6 TGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKA 85 (338)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEECCSCCC
T ss_pred ECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEECCCccc
Confidence 4689999999999999999999999873221 122234589999999999999999997 7899998722 1
Q ss_pred c--------------------hhhhhhhcCCCeEEEeceeeeccCC------------CCcccccchhHHHhHHHHHHHH
Q 028525 76 F--------------------ISNAGSLKGVQHVILLSQLSVYRGS------------GGIQALMKGNARKLAEQDESML 123 (208)
Q Consensus 76 ~--------------------~~~a~~~~gv~~~v~~Ss~~~~~~~------------~~~~~~~~~~~~~~~~~~e~~l 123 (208)
. +.+++++.++++||++||..+|... .+..+|.. .|. .+|.++
T Consensus 86 ~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~~~~~p~~~Y~~--sK~---~~e~~~ 160 (338)
T d1udca_ 86 VGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGK--SKL---MVEQIL 160 (338)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHH--HHH---HHHHHH
T ss_pred hhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEccccccccccccccCCCcchHHH--HHh---hhhHHH
Confidence 0 3456778899999999999888521 11222222 222 334444
Q ss_pred H-----hcCCCEEEEeccccccCCCC-----------c--------------cceee-ec------CCcCCCcccHHHHH
Q 028525 124 M-----ASGIPYTIIRTGVLQNTPGG-----------K--------------QGFQF-EE------GCAANGSLSKEDAA 166 (208)
Q Consensus 124 ~-----~~~~~~tivRp~~~~~~~~~-----------~--------------~~~~~-~~------~~~~~~~v~~~Dva 166 (208)
. ..+++++++||+.+++.... . ..+.+ +. +.+...+++++|++
T Consensus 161 ~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~v~D~~ 240 (338)
T d1udca_ 161 TDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLA 240 (338)
T ss_dssp HHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEEHHHHH
T ss_pred HHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEEEeehh
Confidence 3 25899999999998863211 0 00111 11 11123468999999
Q ss_pred HHHHHHhhCC--CCCCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 167 FICVEALESI--PQTGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 167 ~~~~~~l~~~--~~~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
.++..+.... ...+++||++++. .++.|+++.+.+++|++
T Consensus 241 ~~~~~~~~~~~~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~ 283 (338)
T d1udca_ 241 DGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKP 283 (338)
T ss_dssp HHHHHHHHHHTTCCEEEEEEESCSSCEEHHHHHHHHHHHHTSC
T ss_pred hhccccccccccccCcceeeecCCCCCcHHHHHHHHHHHHCCC
Confidence 8887766533 3446789999866 49999999999998865
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.87 E-value=2.8e-21 Score=152.46 Aligned_cols=195 Identities=14% Similarity=0.126 Sum_probs=138.8
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhh--hh-cCCceEEEEcCCCCH-HHHHHHhcCCCEEEEcCC-C------
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAM--ES-FGTYVESMAGDASNK-KFLKTALRGVRSIICPSE-G------ 75 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~--~~-~~~~v~~v~~Dl~d~-~~l~~~~~~~d~vi~~~~-~------ 75 (208)
-++||+||++|+++|+++||+|++++|++++.. .. ...+++++++|+.|. +.+..++.++|++++..+ .
T Consensus 9 tGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 88 (350)
T d1xgka_ 9 VGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTSQAGDEIA 88 (350)
T ss_dssp ESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCSTTSCHHH
T ss_pred ECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecccccchhhh
Confidence 357999999999999999999999999877632 21 235799999999884 557778899999987621 1
Q ss_pred ---chhhhhhhcCCCeEEEeceeeeccCCC--CcccccchhHHHhHHHHHHHHHhcCCCEEEEeccccccCCCCc-----
Q 028525 76 ---FISNAGSLKGVQHVILLSQLSVYRGSG--GIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGK----- 145 (208)
Q Consensus 76 ---~~~~a~~~~gv~~~v~~Ss~~~~~~~~--~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~----- 145 (208)
.+.+++..+|++++++.||........ ...++.. .+ ...+.++++.+++|+++||+.+++.....
T Consensus 89 ~~~~~~~aa~~agv~~~v~~Ss~~~~~~~~~~~~~~~~~--~k---~~~~~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~ 163 (350)
T d1xgka_ 89 IGKDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWA--PK---FTVENYVRQLGLPSTFVYAGIYNNNFTSLPYPLF 163 (350)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEECCCGGGTSSCCCCTTTH--HH---HHHHHHHHTSSSCEEEEEECEEGGGCBSSSCSSC
T ss_pred hhhHHHHHHHHhCCCceEEEeeccccccCCcccchhhhh--hH---HHHHHHHHhhccCceeeeeceeeccccccccccc
Confidence 156778889998888888876543221 1122221 22 24578888899999999999987642110
Q ss_pred -------cceeee---cCCcCCCcccH-HHHHHHHHHHhhCCC--CCCcEEEEeeCCcchhhHHHHHHHHhhhc
Q 028525 146 -------QGFQFE---EGCAANGSLSK-EDAAFICVEALESIP--QTGLIFEVVNGEEKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 146 -------~~~~~~---~~~~~~~~v~~-~Dva~~~~~~l~~~~--~~~~~~~i~~~~~~~~e~~~~~~~~~~~~ 206 (208)
....+. .++....+++. +|+++++..++.++. ..|+.|++++...|..|+++++++++|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~~~~~~G~~~~~~g~~~T~~eia~~l~~~~G~~ 237 (350)
T d1xgka_ 164 QMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGHRIALTFETLSPVQVCAAFSRALNRR 237 (350)
T ss_dssp BEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHHHTTCEEEECSEEECHHHHHHHHHHHHTSC
T ss_pred cccccccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCChhhcCCeEEEEeCCcCCHHHHHHHHHHHHCCc
Confidence 001111 12222344554 899999999987543 46899999865469999999999999986
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.87 E-value=3.3e-21 Score=151.52 Aligned_cols=199 Identities=11% Similarity=0.008 Sum_probs=140.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-------hhhh----cCCceEEEEcCCCCHHHHHHHhcCCCEEEEc-CC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-------AMES----FGTYVESMAGDASNKKFLKTALRGVRSIICP-SE- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-------~~~~----~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~~- 74 (208)
++||+||++|+++|+++||+|++++|.... .... ...+++++.+|+.|.........+.+.++++ +.
T Consensus 23 G~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~v~~~~a~~ 102 (341)
T d1sb8a_ 23 GVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALG 102 (341)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSEEEECCSCC
T ss_pred cCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccccccccccccc
Confidence 579999999999999999999999873321 1111 1246899999999999999999999999976 22
Q ss_pred Cc--------------------hhhhhhhcCCCeEEEeceeeeccCC--------CCcccccchh-HHHhHHH-HHHHHH
Q 028525 75 GF--------------------ISNAGSLKGVQHVILLSQLSVYRGS--------GGIQALMKGN-ARKLAEQ-DESMLM 124 (208)
Q Consensus 75 ~~--------------------~~~a~~~~gv~~~v~~Ss~~~~~~~--------~~~~~~~~~~-~~~~~~~-~e~~l~ 124 (208)
.. +.++|.+.++++|||+||..+|+.. .+..|...+. .|...+. ++.+.+
T Consensus 103 ~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~ 182 (341)
T d1sb8a_ 103 SVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSR 182 (341)
T ss_dssp CHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHH
Confidence 10 3456788899999999999998621 1222222221 3333221 223334
Q ss_pred hcCCCEEEEeccccccCCCCc------------------cce-eeecCCcCCCcccHHHHHHHHHHHhhCCC-CCCcEEE
Q 028525 125 ASGIPYTIIRTGVLQNTPGGK------------------QGF-QFEEGCAANGSLSKEDAAFICVEALESIP-QTGLIFE 184 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~------------------~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~ 184 (208)
..+++++++||+.+++..... ..+ .++.+.+...+++++|++.++..++..+. ..++.|+
T Consensus 183 ~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~~~~~~~~~ 262 (341)
T d1sb8a_ 183 CYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARNQVYN 262 (341)
T ss_dssp HHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGGGCSEEEE
T ss_pred HhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhhhhhhccccccceeee
Confidence 578999999999888643211 011 12334445678999999999999887654 4678999
Q ss_pred EeeCC-cchhhHHHHHHHHhhhc
Q 028525 185 VVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 185 i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
++++. .++.|+++.+.+..+..
T Consensus 263 ~~~~~~~si~~i~~~i~~~~~~~ 285 (341)
T d1sb8a_ 263 IAVGGRTSLNQLFFALRDGLAEN 285 (341)
T ss_dssp ESCSCCEEHHHHHHHHHHHHHHT
T ss_pred ecccccchHHHHHHHHHHHhccc
Confidence 98866 49999999999988765
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.4e-22 Score=157.82 Aligned_cols=194 Identities=12% Similarity=0.035 Sum_probs=129.5
Q ss_pred hhccccCccHHHHHHHHHhCCCcEEEEEcCchhh----hhh-cCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC--Cc-
Q 028525 5 KKMKRKKMNFRMVILSLIVKRTRIKALVKDKRNA----MES-FGTYVESMAGDASNKKFLKTALRGVRSIICPSE--GF- 76 (208)
Q Consensus 5 ~~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~----~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~--~~- 76 (208)
.+.++||+||++|+++|+++||+|++++|..+.. ... ....+++...|+.+ .++.++|+|||+++ ..
T Consensus 5 lVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~~~~d~VihlAa~~~~~ 79 (312)
T d2b69a1 5 LITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE-----PLYIEVDQIYHLASPASPP 79 (312)
T ss_dssp EEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTS-----CCCCCCSEEEECCSCCSHH
T ss_pred EEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHH-----HHHcCCCEEEECcccCCch
Confidence 3457899999999999999999999998743321 111 12346666666654 35668999998722 10
Q ss_pred -------------------hhhhhhhcCCCeEEEeceeeeccCCC-------------Ccccccchh-HHHhHH-HHHHH
Q 028525 77 -------------------ISNAGSLKGVQHVILLSQLSVYRGSG-------------GIQALMKGN-ARKLAE-QDESM 122 (208)
Q Consensus 77 -------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~-------------~~~~~~~~~-~~~~~~-~~e~~ 122 (208)
+.+++++.++ |+||+||..+|+... +..|...+. .|...+ .++.+
T Consensus 80 ~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~-k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~ 158 (312)
T d2b69a1 80 NYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAY 158 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred hHHhCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 2455667777 799999999886321 111221111 233222 13333
Q ss_pred HHhcCCCEEEEeccccccCCCCc----------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEE
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGK----------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEV 185 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~----------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i 185 (208)
.+..+++++++||+.+++..... ..+. ++.+.+...++|.+|+++++..+++.+ .+..||+
T Consensus 159 ~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~~~--~~~~~n~ 236 (312)
T d2b69a1 159 MKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN--VSSPVNL 236 (312)
T ss_dssp HHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSS--CCSCEEE
T ss_pred HHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHHhhc--cCCceEe
Confidence 34579999999999998743211 1111 233444567899999999999888654 3568999
Q ss_pred eeCCc-chhhHHHHHHHHhhhc
Q 028525 186 VNGEE-KVSDWKKCFSRLMEKT 206 (208)
Q Consensus 186 ~~~~~-~~~e~~~~~~~~~~~~ 206 (208)
+++.. ++.++++.+++.++..
T Consensus 237 ~~~~~~~~~~~~~~i~~~~~~~ 258 (312)
T d2b69a1 237 GNPEEHTILEFAQLIKNLVGSG 258 (312)
T ss_dssp SCCCEEEHHHHHHHHHHHHTCC
T ss_pred cCCcccchhhHHHHHHHHhCCC
Confidence 98775 8999999999998865
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.86 E-value=6.9e-21 Score=150.94 Aligned_cols=195 Identities=9% Similarity=0.023 Sum_probs=133.4
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchh------hhhhc-CCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCC-Cc
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRN------AMESF-GTYVESMAGDASNKKFLKTALR--GVRSIICPSE-GF 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~------~~~~~-~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~-~~ 76 (208)
-+++|+||++|+++|+++||+|++..++.+. ..... ..+++++.+|++|++.+.++++ .+|+|||+++ ..
T Consensus 6 tG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~VihlAa~~~ 85 (361)
T d1kewa_ 6 TGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESH 85 (361)
T ss_dssp ESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCC
T ss_pred ECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEECccccc
Confidence 4689999999999999999987666554321 11111 3479999999999999999987 4799998732 11
Q ss_pred ---------------------hhhhhhhc---------CCCeEEEeceeeeccCCC------------------Cccccc
Q 028525 77 ---------------------ISNAGSLK---------GVQHVILLSQLSVYRGSG------------------GIQALM 108 (208)
Q Consensus 77 ---------------------~~~a~~~~---------gv~~~v~~Ss~~~~~~~~------------------~~~~~~ 108 (208)
+.++|.+. ++++||++||..+|+... +..|..
T Consensus 86 ~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~~~~p~s 165 (361)
T d1kewa_ 86 VDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSS 165 (361)
T ss_dssp HHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSCCCCCS
T ss_pred hhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcccCCCCCCCC
Confidence 12334332 456999999999886211 011111
Q ss_pred ch-hHHHhHHHHHHHH----HhcCCCEEEEeccccccCCCCc--------------ccee-eecCCcCCCcccHHHHHHH
Q 028525 109 KG-NARKLAEQDESML----MASGIPYTIIRTGVLQNTPGGK--------------QGFQ-FEEGCAANGSLSKEDAAFI 168 (208)
Q Consensus 109 ~~-~~~~~~~~~e~~l----~~~~~~~tivRp~~~~~~~~~~--------------~~~~-~~~~~~~~~~v~~~Dva~~ 168 (208)
.+ .+|. .+|.++ +..+++++++||+.+++..... ..+. ++.+.+...+++++|+|++
T Consensus 166 ~Yg~sK~---~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v~D~a~a 242 (361)
T d1kewa_ 166 PYSASKA---SSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARA 242 (361)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHHHHHHHcCCCcEEeCCCCeEEeCEEHHHHHHH
Confidence 11 1233 344444 4579999999999998743211 1122 2334444568999999999
Q ss_pred HHHHhhCCCCCCcEEEEeeCCc-chhhHHHHHHHHhhh
Q 028525 169 CVEALESIPQTGLIFEVVNGEE-KVSDWKKCFSRLMEK 205 (208)
Q Consensus 169 ~~~~l~~~~~~~~~~~i~~~~~-~~~e~~~~~~~~~~~ 205 (208)
+..+++++.. +..||++++.. +..|+++.+.+..+.
T Consensus 243 i~~~~~~~~~-~~~~Ni~s~~~~s~~~~~~~i~~~~~~ 279 (361)
T d1kewa_ 243 LHMVVTEGKA-GETYNIGGHNEKKNLDVVFTICDLLDE 279 (361)
T ss_dssp HHHHHHHCCT-TCEEEECCCCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CCeEEECCCCCcchHHHHhHhhhhccc
Confidence 9999987654 67999998775 889999888876654
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.85 E-value=2.7e-20 Score=146.56 Aligned_cols=200 Identities=13% Similarity=0.053 Sum_probs=135.9
Q ss_pred hhccccCccHHHHHHHHHhCCCcEEEEEcCch-------hhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC-CC-
Q 028525 5 KKMKRKKMNFRMVILSLIVKRTRIKALVKDKR-------NAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS-EG- 75 (208)
Q Consensus 5 ~~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~-------~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~-~~- 75 (208)
.+-++||+||++|+++|+++||+|.+++++.. ........+++++.+|+.|.+.+..++.+++.|++++ ..
T Consensus 6 LVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~a~~~~ 85 (346)
T d1oc2a_ 6 IVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAAESH 85 (346)
T ss_dssp EEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECCSCCC
T ss_pred EEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhhhhhhhhhhccc
Confidence 33578999999999999999999887766421 1223345689999999999999999999999998762 21
Q ss_pred c--------------------hhhhhhhcCCCeEEEeceeeeccCC--------------------CCcccccchh-HHH
Q 028525 76 F--------------------ISNAGSLKGVQHVILLSQLSVYRGS--------------------GGIQALMKGN-ARK 114 (208)
Q Consensus 76 ~--------------------~~~a~~~~gv~~~v~~Ss~~~~~~~--------------------~~~~~~~~~~-~~~ 114 (208)
. +.+++...+. ++|++||..+|+.. .+..|...+. .|.
T Consensus 86 ~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~-k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y~~sK~ 164 (346)
T d1oc2a_ 86 NDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKA 164 (346)
T ss_dssp HHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHHHHHHH
T ss_pred ccchhhCcccceeeehHhHHhhhhhhccccc-cccccccceEecccCccccccccccCcccccccCCCCCCCCHHHHHHH
Confidence 0 1234556664 78899888887510 0111111111 233
Q ss_pred hHH-HHHHHHHhcCCCEEEEeccccccCCCCc---------------cceeeecCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 115 LAE-QDESMLMASGIPYTIIRTGVLQNTPGGK---------------QGFQFEEGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 115 ~~~-~~e~~l~~~~~~~tivRp~~~~~~~~~~---------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
..+ .+..+.+..+++++++||+.+++..... ....++.+.+...+++.+|+|+++..+++++.
T Consensus 165 ~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~D~a~a~~~~~~~~~- 243 (346)
T d1oc2a_ 165 ASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGR- 243 (346)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEeecceeCCCCCccchhHHHHHHHHcCCceeEeCCCCccccccchhhHHHHHHHHHhhcc-
Confidence 222 1223334579999999999998742211 11123334455678999999999998887655
Q ss_pred CCcEEEEeeCCc-chhhHHHHHHHHhhhc
Q 028525 179 TGLIFEVVNGEE-KVSDWKKCFSRLMEKT 206 (208)
Q Consensus 179 ~~~~~~i~~~~~-~~~e~~~~~~~~~~~~ 206 (208)
.+..|+++++.. +..++++.+.+.++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 272 (346)
T d1oc2a_ 244 MGETYLIGADGEKNNKEVLELILEKMGQP 272 (346)
T ss_dssp TTCEEEECCSCEEEHHHHHHHHHHHTTCC
T ss_pred cCccccccccccccchHHHHHHHHHhCCC
Confidence 467788887664 8899999988888764
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.85 E-value=6.9e-20 Score=142.49 Aligned_cols=196 Identities=12% Similarity=-0.033 Sum_probs=133.6
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchh-----hhhh-cCCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCC-Cc-
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRN-----AMES-FGTYVESMAGDASNKKFLKTALRG--VRSIICPSE-GF- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-----~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~-~~- 76 (208)
-++||+||++|+++|+++||+|++++|..+. .... ...+++++.+|+.|.+.+.+.+.. .+++++++. ..
T Consensus 6 tG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (321)
T d1rpna_ 6 TGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFV 85 (321)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCCH
T ss_pred ECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhccccccccccccccccc
Confidence 4679999999999999999999999997643 1111 134799999999999999998864 456666521 10
Q ss_pred --------------------hhhhhhhcCCC-eEEEeceeeeccCC--------C---CcccccchhHHHhHH-HHHHHH
Q 028525 77 --------------------ISNAGSLKGVQ-HVILLSQLSVYRGS--------G---GIQALMKGNARKLAE-QDESML 123 (208)
Q Consensus 77 --------------------~~~a~~~~gv~-~~v~~Ss~~~~~~~--------~---~~~~~~~~~~~~~~~-~~e~~l 123 (208)
+.+++++.+++ +|++.||..+++.. . +.++|.. .|...+ .++.+.
T Consensus 86 ~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~~~~~p~~~Y~~--sK~~~E~~~~~~~ 163 (321)
T d1rpna_ 86 GASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGV--AKLYGHWITVNYR 163 (321)
T ss_dssp HHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHH--HHHHHHHHHHHHH
T ss_pred cccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCCCCccccChhHH--HHHHHHHHHHHHH
Confidence 23556677765 77777777766421 1 2222322 333222 123333
Q ss_pred HhcCCCEEEEeccccccCCCCc-------------------cceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEE
Q 028525 124 MASGIPYTIIRTGVLQNTPGGK-------------------QGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFE 184 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~-------------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~ 184 (208)
...+++++++||+.+++..... ..+.++.+.+...+++++|+|+++..+++++. +..|+
T Consensus 164 ~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~~~~~~~--~~~~n 241 (321)
T d1rpna_ 164 ESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK--ADDYV 241 (321)
T ss_dssp HHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSSS--CCCEE
T ss_pred hhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHHHHhcCC--cCCce
Confidence 4579999999999887643111 11223334444578999999999999998775 46699
Q ss_pred EeeCCc-chhhHHHHHHHHhhhc
Q 028525 185 VVNGEE-KVSDWKKCFSRLMEKT 206 (208)
Q Consensus 185 i~~~~~-~~~e~~~~~~~~~~~~ 206 (208)
++++.. ++.++++.+.+..+..
T Consensus 242 i~~~~~~s~~~~~~~~~~~~~~~ 264 (321)
T d1rpna_ 242 VATGVTTTVRDMCQIAFEHVGLD 264 (321)
T ss_dssp ECCSCEEEHHHHHHHHHHTTTCC
T ss_pred ecccccceehhhhHHHHHHhCCC
Confidence 987664 8999999998887653
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=2.6e-20 Score=146.68 Aligned_cols=200 Identities=12% Similarity=0.029 Sum_probs=134.1
Q ss_pred hhccccCccHHHHHHHHHhCCCcEEEEEcCchh-------hhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCC-
Q 028525 5 KKMKRKKMNFRMVILSLIVKRTRIKALVKDKRN-------AMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSE- 74 (208)
Q Consensus 5 ~~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-------~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~- 74 (208)
.+-++||+||++|+++|+++||+|++++|.... .......+++++++|++|.+.+.+++. ++|+|||+++
T Consensus 5 LVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~VihlAa~ 84 (347)
T d1z45a2 5 LVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGL 84 (347)
T ss_dssp EEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEECCSC
T ss_pred EEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEcccc
Confidence 445789999999999999999999999763221 122234579999999999999999887 7899998722
Q ss_pred -Cc--------------------hhhhhhhcCCCeEEEeceeeeccCC------------CCcccccch-hHHHhHHHHH
Q 028525 75 -GF--------------------ISNAGSLKGVQHVILLSQLSVYRGS------------GGIQALMKG-NARKLAEQDE 120 (208)
Q Consensus 75 -~~--------------------~~~a~~~~gv~~~v~~Ss~~~~~~~------------~~~~~~~~~-~~~~~~~~~e 120 (208)
.. +.+++++.+++|||++||..+|+.. .+..|...| ..|. .+|
T Consensus 85 ~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~~~p~~~Y~~sK~---~~E 161 (347)
T d1z45a2 85 KAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKY---AIE 161 (347)
T ss_dssp CCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHHHHH---HHH
T ss_pred ccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccccCCCCCChhHhHHH---HHH
Confidence 10 2456778899999999999998621 111222111 1233 345
Q ss_pred HHHHh------cCCCEEEEeccccccCCCCc-----------c--------------cee-eecCC------cCCCcccH
Q 028525 121 SMLMA------SGIPYTIIRTGVLQNTPGGK-----------Q--------------GFQ-FEEGC------AANGSLSK 162 (208)
Q Consensus 121 ~~l~~------~~~~~tivRp~~~~~~~~~~-----------~--------------~~~-~~~~~------~~~~~v~~ 162 (208)
+++.. .+++++++||+.+++..... . .+. ++.+. .....++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~d~~~~ 241 (347)
T d1z45a2 162 NILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHV 241 (347)
T ss_dssp HHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEECEEEH
T ss_pred HHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCceeeeeeee
Confidence 54432 47899999998877531100 0 000 11111 11235566
Q ss_pred HHHHHHHHHHhhCC------CCCCcEEEEeeCCc-chhhHHHHHHHHhhhcC
Q 028525 163 EDAAFICVEALESI------PQTGLIFEVVNGEE-KVSDWKKCFSRLMEKTG 207 (208)
Q Consensus 163 ~Dva~~~~~~l~~~------~~~~~~~~i~~~~~-~~~e~~~~~~~~~~~~~ 207 (208)
.|.+.+++.+++.. ...++.||++++.. ++.|+++.+.++.+.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~ 293 (347)
T d1z45a2 242 VDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDL 293 (347)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCC
T ss_pred ecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCC
Confidence 78888887776532 23468899988775 99999999999988653
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=7.7e-20 Score=143.54 Aligned_cols=196 Identities=11% Similarity=0.049 Sum_probs=133.6
Q ss_pred ccccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhh-cCCceEEEEcCCCCHHHHHH-HhcCCCEEEEcCC--Cc-----
Q 028525 7 MKRKKMNFRMVILSLIVKR-TRIKALVKDKRNAMES-FGTYVESMAGDASNKKFLKT-ALRGVRSIICPSE--GF----- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~-~~~~~d~vi~~~~--~~----- 76 (208)
-++||+||++|+++|+++| ++|+++++...+.... ...+++++++|++|.+.+.+ +++++|+|||++. ..
T Consensus 6 TG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~ 85 (342)
T d2blla1 6 LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTR 85 (342)
T ss_dssp ETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCCCHHHHHH
T ss_pred ECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccccccccccccc
Confidence 4689999999999999999 5899998876553333 24589999999988766555 6778999998722 10
Q ss_pred ---------------hhhhhhhcCCCeEEEeceeeeccCCCC-----------c----ccccchh-HHHhHHHHHHHHH-
Q 028525 77 ---------------ISNAGSLKGVQHVILLSQLSVYRGSGG-----------I----QALMKGN-ARKLAEQDESMLM- 124 (208)
Q Consensus 77 ---------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~-----------~----~~~~~~~-~~~~~~~~e~~l~- 124 (208)
+.+++.+.+++ +++.||..+|+.... . .|...+. .|. .+|+++.
T Consensus 86 ~~~~~~~~nv~gt~~ll~~~~~~~~~-~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~---~~E~~~~~ 161 (342)
T d2blla1 86 NPLRVFELDFEENLRIIRYCVKYRKR-IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQ---LLDRVIWA 161 (342)
T ss_dssp SHHHHHHHHTHHHHHHHHHHHHTTCE-EEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHH---HHHHHHHH
T ss_pred CCcccccccccccccccccccccccc-ccccccccccccccccccccccccccccccCCCcchhhhccc---chhhhhhh
Confidence 23455666764 567888777652110 0 1111111 222 3455553
Q ss_pred ---hcCCCEEEEeccccccCCCCc----------------------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCC-
Q 028525 125 ---ASGIPYTIIRTGVLQNTPGGK----------------------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIP- 177 (208)
Q Consensus 125 ---~~~~~~tivRp~~~~~~~~~~----------------------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~- 177 (208)
..+++++++||+.+++..... ..+. ++.+.+...+++++|+++++..+++++.
T Consensus 162 ~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~~~~~~ 241 (342)
T d2blla1 162 YGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGN 241 (342)
T ss_dssp HHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGG
T ss_pred hhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeecccccccceeeeehhhccc
Confidence 469999999999988632110 1111 2233444568999999999999998753
Q ss_pred -CCCcEEEEeeCC--cchhhHHHHHHHHhhhc
Q 028525 178 -QTGLIFEVVNGE--EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 178 -~~~~~~~i~~~~--~~~~e~~~~~~~~~~~~ 206 (208)
..+++||++++. .+++|+++.+.+.+++.
T Consensus 242 ~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~ 273 (342)
T d2blla1 242 RCDGEIINIGNPENEASIEELGEMLLASFEKH 273 (342)
T ss_dssp TTTTEEEEECCTTSEEEHHHHHHHHHHHHHTC
T ss_pred cCCCeEEEEecccchhHHHHHHHHHHHHhCCC
Confidence 457899998654 38999999999988764
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.5e-19 Score=142.04 Aligned_cols=195 Identities=12% Similarity=-0.012 Sum_probs=131.1
Q ss_pred hccccCccHHHHHHHHHhCCCcEEEEEcCchhh-----h-------hhcCCceEEEEcCCCCHHHHHHHhcC--CCEEEE
Q 028525 6 KMKRKKMNFRMVILSLIVKRTRIKALVKDKRNA-----M-------ESFGTYVESMAGDASNKKFLKTALRG--VRSIIC 71 (208)
Q Consensus 6 ~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-----~-------~~~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~ 71 (208)
+-++||+||++|+++|+++||+|++++|..+.. . .....+++++.+|++|++.+..++.+ .+++++
T Consensus 6 VTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~v~~ 85 (347)
T d1t2aa_ 6 ITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYN 85 (347)
T ss_dssp EETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred EecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhcccceeee
Confidence 447899999999999999999999999975421 1 11124689999999999999999864 567776
Q ss_pred c-CCCc---------------------hhhhhhhcCC---CeEEEeceeeeccCC--------CCcccccch-hHHHhHH
Q 028525 72 P-SEGF---------------------ISNAGSLKGV---QHVILLSQLSVYRGS--------GGIQALMKG-NARKLAE 117 (208)
Q Consensus 72 ~-~~~~---------------------~~~a~~~~gv---~~~v~~Ss~~~~~~~--------~~~~~~~~~-~~~~~~~ 117 (208)
+ +... +.+++++.++ ++||++||..+|+.+ .+..|...| ..|.
T Consensus 86 ~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~P~~~Yg~sK~--- 162 (347)
T d1t2aa_ 86 LGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKL--- 162 (347)
T ss_dssp CCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCCSHHHHHHH---
T ss_pred eeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCCCCCCCCHHHHHHH---
Confidence 5 2211 2345666655 489999999998621 112222111 1333
Q ss_pred HHHHHH----HhcCCCEEEEeccccccCCCCc-------------------cceeeecCCcCCCcccHHHHHHHHHHHhh
Q 028525 118 QDESML----MASGIPYTIIRTGVLQNTPGGK-------------------QGFQFEEGCAANGSLSKEDAAFICVEALE 174 (208)
Q Consensus 118 ~~e~~l----~~~~~~~tivRp~~~~~~~~~~-------------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~ 174 (208)
.+|+++ +..+++++++||+.+++..... ....++.+.+...+++++|+++++..+++
T Consensus 163 ~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~a~~~~~~ 242 (347)
T d1t2aa_ 163 YAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQ 242 (347)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeeeeEecHHHHHHHHHhh
Confidence 345444 4579999999999888642110 11223334445678999999999999998
Q ss_pred CCCCCCcEEEEeeCCc-chhhHHHHHHHHhhh
Q 028525 175 SIPQTGLIFEVVNGEE-KVSDWKKCFSRLMEK 205 (208)
Q Consensus 175 ~~~~~~~~~~i~~~~~-~~~e~~~~~~~~~~~ 205 (208)
+... ..|++..+.. +..+..+.+....++
T Consensus 243 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (347)
T d1t2aa_ 243 NDEP--EDFVIATGEVHSVREFVEKSFLHIGK 272 (347)
T ss_dssp SSSC--CCEEECCSCCEEHHHHHHHHHHHTTC
T ss_pred cCCC--ccceeccccccccchhhhhhhhhhcc
Confidence 7653 4577776554 788888777666654
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.82 E-value=6.3e-20 Score=144.25 Aligned_cols=195 Identities=10% Similarity=0.030 Sum_probs=128.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh--------hcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC-C-Cc-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME--------SFGTYVESMAGDASNKKFLKTALRGVRSIICPS-E-GF- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~--------~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~-~-~~- 76 (208)
++||+||++|+++|+++||+|++++|+.++... ........+.+|+.|.+++.+++.++|+|++++ . ..
T Consensus 18 G~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~~a~~~~~~ 97 (342)
T d1y1pa1 18 GANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFS 97 (342)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEECCCCCSCC
T ss_pred CCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhhhccccccc
Confidence 579999999999999999999999998765321 112345568899999999999999999999772 1 11
Q ss_pred ----------------hhhhhhh-cCCCeEEEeceeeeccCCC----------------------------Ccccccch-
Q 028525 77 ----------------ISNAGSL-KGVQHVILLSQLSVYRGSG----------------------------GIQALMKG- 110 (208)
Q Consensus 77 ----------------~~~a~~~-~gv~~~v~~Ss~~~~~~~~----------------------------~~~~~~~~- 110 (208)
+.+++.+ .++++|||+||..+..... +..+...|
T Consensus 98 ~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~p~~~Y~ 177 (342)
T d1y1pa1 98 NKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYA 177 (342)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSCTTSTTHHHHHHH
T ss_pred ccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCccccccccccccccccccccccCCCCCcCccc
Confidence 2334545 4799999999975432100 01111111
Q ss_pred hHHHhHH-HHHHHHHhc--CCCEEEEeccccccCCC---Cccc--------------eeeecCCcCCCcccHHHHHHHHH
Q 028525 111 NARKLAE-QDESMLMAS--GIPYTIIRTGVLQNTPG---GKQG--------------FQFEEGCAANGSLSKEDAAFICV 170 (208)
Q Consensus 111 ~~~~~~~-~~e~~l~~~--~~~~tivRp~~~~~~~~---~~~~--------------~~~~~~~~~~~~v~~~Dva~~~~ 170 (208)
..|..++ .+..+.+.. +++++.+||+.+++... .... .....+.....+++++|+|++++
T Consensus 178 ~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~v~v~Dva~~~i 257 (342)
T d1y1pa1 178 ASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHL 257 (342)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCSEEEEEHHHHHHHHH
T ss_pred chhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCcccCCccceeeeeHHHHHHHHH
Confidence 1232222 133344543 57789999998876421 1100 00111223355799999999999
Q ss_pred HHhhCCCCCCcEEEEeeCC-cchhhHHHHHHHHh
Q 028525 171 EALESIPQTGLIFEVVNGE-EKVSDWKKCFSRLM 203 (208)
Q Consensus 171 ~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~~~~~ 203 (208)
.+++++...+..| ++++. .+++|+++++.+..
T Consensus 258 ~~l~~~~~~g~~~-~~~~~~~t~~eia~~i~k~~ 290 (342)
T d1y1pa1 258 GCLVLPQIERRRV-YGTAGTFDWNTVLATFRKLY 290 (342)
T ss_dssp HHHHCTTCCSCEE-EECCEEECHHHHHHHHHHHC
T ss_pred HhhcCccccceEE-EEcCCceEHHHHHHHHHHHc
Confidence 9999888776655 55444 59999999998875
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.82 E-value=2.3e-19 Score=143.03 Aligned_cols=197 Identities=13% Similarity=0.104 Sum_probs=131.4
Q ss_pred cccCccHHHHHHHHHh-CCCcEEEEEc---Cc---------hhh-----------hhhcCCceEEEEcCCCCHHHHHHHh
Q 028525 8 KRKKMNFRMVILSLIV-KRTRIKALVK---DK---------RNA-----------MESFGTYVESMAGDASNKKFLKTAL 63 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~-~g~~V~~~~R---~~---------~~~-----------~~~~~~~v~~v~~Dl~d~~~l~~~~ 63 (208)
+++|+||++|+++|++ .||+|+++++ +. +.. ......++.++.+|++|.+.+.+++
T Consensus 9 G~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~ 88 (383)
T d1gy8a_ 9 GGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNEDFLNGVF 88 (383)
T ss_dssp TTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCHHHhhhhh
Confidence 6899999999999996 5899999974 10 000 0011236889999999999999988
Q ss_pred c---CCCEEEEcCC-Cc---------------------hhhhhhhcCCCeEEEeceeeeccCC-----------------
Q 028525 64 R---GVRSIICPSE-GF---------------------ISNAGSLKGVQHVILLSQLSVYRGS----------------- 101 (208)
Q Consensus 64 ~---~~d~vi~~~~-~~---------------------~~~a~~~~gv~~~v~~Ss~~~~~~~----------------- 101 (208)
+ ++|+|||+++ .. ...++...+++++++.|+..++...
T Consensus 89 ~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~~~ 168 (383)
T d1gy8a_ 89 TRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAK 168 (383)
T ss_dssp HHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCCCBCTTSC
T ss_pred hccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccccccccccccccccccccccccccccC
Confidence 5 6799998732 11 2356778899999999888776411
Q ss_pred -CCcccccchhHHHhHH-HHHHHHHhcCCCEEEEeccccccCCCCcc---------------------------------
Q 028525 102 -GGIQALMKGNARKLAE-QDESMLMASGIPYTIIRTGVLQNTPGGKQ--------------------------------- 146 (208)
Q Consensus 102 -~~~~~~~~~~~~~~~~-~~e~~l~~~~~~~tivRp~~~~~~~~~~~--------------------------------- 146 (208)
.|..+|.. .|...+ .++.+.+..+++++++||+.+++......
T Consensus 169 ~~p~~~Y~~--sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~~~~~~~ 246 (383)
T d1gy8a_ 169 KSPESPYGE--SKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHE 246 (383)
T ss_dssp CBCSSHHHH--HHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-------
T ss_pred CCCCCHHHh--hHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhccccccchhhh
Confidence 11222322 233222 13333345799999999999876422100
Q ss_pred ------cee-eec------CCcCCCcccHHHHHHHHHHHhhCC--------CCCCcEEEEeeCCc-chhhHHHHHHHHhh
Q 028525 147 ------GFQ-FEE------GCAANGSLSKEDAAFICVEALESI--------PQTGLIFEVVNGEE-KVSDWKKCFSRLME 204 (208)
Q Consensus 147 ------~~~-~~~------~~~~~~~v~~~Dva~~~~~~l~~~--------~~~~~~~~i~~~~~-~~~e~~~~~~~~~~ 204 (208)
.+. ++. +.+...+++++|+|+++..+++.. ...+++||++++.. ++.|+++.+.+.++
T Consensus 247 ~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el~~~i~~~~~ 326 (383)
T d1gy8a_ 247 DASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEVARKTTG 326 (383)
T ss_dssp ----CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHHHHHHHHHC
T ss_pred hhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeHHHHHHHHHHHhC
Confidence 000 010 111134689999999999888642 12357899988764 99999999999988
Q ss_pred hc
Q 028525 205 KT 206 (208)
Q Consensus 205 ~~ 206 (208)
.+
T Consensus 327 ~~ 328 (383)
T d1gy8a_ 327 HP 328 (383)
T ss_dssp CC
T ss_pred CC
Confidence 65
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.8e-19 Score=140.54 Aligned_cols=198 Identities=14% Similarity=0.106 Sum_probs=132.8
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCch----------h---hhhhcCCceEEEEcCCCCHHHHHHHhcCCC--EEEE
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKR----------N---AMESFGTYVESMAGDASNKKFLKTALRGVR--SIIC 71 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~----------~---~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d--~vi~ 71 (208)
-++||+||++|+++|+++||+|++++|... . .......+++++++|++|.+.+.+++.+.+ +++|
T Consensus 8 TG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~~~i~h 87 (346)
T d1ek6a_ 8 TGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIH 87 (346)
T ss_dssp ETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCEEEEEE
T ss_pred ECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccccccccccccccccccc
Confidence 367999999999999999999999975211 1 122234679999999999999999998765 5555
Q ss_pred cCC--Cc--------------------hhhhhhhcCCCeEEEeceeeeccCC------------CCcccccchhHHHhHH
Q 028525 72 PSE--GF--------------------ISNAGSLKGVQHVILLSQLSVYRGS------------GGIQALMKGNARKLAE 117 (208)
Q Consensus 72 ~~~--~~--------------------~~~a~~~~gv~~~v~~Ss~~~~~~~------------~~~~~~~~~~~~~~~~ 117 (208)
+++ +. +.++++..++++|+++||..+++.. .+.++|.. .+...+
T Consensus 88 ~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~k~~~e 165 (346)
T d1ek6a_ 88 FAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGK--SKFFIE 165 (346)
T ss_dssp CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHH--HHHHHH
T ss_pred cccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccccccccccccCChHHH--HHHHHH
Confidence 522 11 2456778899999999999887621 11222322 222221
Q ss_pred -HHHHHHHh-cCCCEEEEeccccccCCCC--------c-----------------cceee-ec------CCcCCCcccHH
Q 028525 118 -QDESMLMA-SGIPYTIIRTGVLQNTPGG--------K-----------------QGFQF-EE------GCAANGSLSKE 163 (208)
Q Consensus 118 -~~e~~l~~-~~~~~tivRp~~~~~~~~~--------~-----------------~~~~~-~~------~~~~~~~v~~~ 163 (208)
.+.++.+. .+++++++||+.+++.... + ..+.+ +. +.+...+++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~Rdfi~v~ 245 (346)
T d1ek6a_ 166 EMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVV 245 (346)
T ss_dssp HHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHH
T ss_pred HHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCeeEeEEEEE
Confidence 12223333 5899999999888763210 0 00111 11 11123578999
Q ss_pred HHHHHHHHHhhCC--CCCCcEEEEeeCCc-chhhHHHHHHHHhhhc
Q 028525 164 DAAFICVEALESI--PQTGLIFEVVNGEE-KVSDWKKCFSRLMEKT 206 (208)
Q Consensus 164 Dva~~~~~~l~~~--~~~~~~~~i~~~~~-~~~e~~~~~~~~~~~~ 206 (208)
|+|.++..++... ...+++||++++.. ++.|+++.+.++.+++
T Consensus 246 D~a~~~~~~~~~~~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~ 291 (346)
T d1ek6a_ 246 DLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKK 291 (346)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSC
T ss_pred eccchhhhhccccccccCceEEEeCCCCcccHHHHHHHHHHHhCCC
Confidence 9999988775543 34567899998775 8999999999998865
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.81 E-value=5.7e-19 Score=141.09 Aligned_cols=198 Identities=16% Similarity=0.102 Sum_probs=129.7
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEc---C-------------c-hh------hhhhcCCceEEEEcCCCCHHHHHHHh
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVK---D-------------K-RN------AMESFGTYVESMAGDASNKKFLKTAL 63 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R---~-------------~-~~------~~~~~~~~v~~v~~Dl~d~~~l~~~~ 63 (208)
-++||+||++|+++|+++||+|++++. . . +. .......+++++.+|++|.+.+.+++
T Consensus 7 TGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~ 86 (393)
T d1i24a_ 7 IGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFEFLAESF 86 (393)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHHHHHHHH
Confidence 468999999999999999999999861 0 0 00 11122457999999999999999999
Q ss_pred cC--CCEEEEcCC-Cc------------------------hhhhhhhcCCC-eEEEeceeeeccCC--------------
Q 028525 64 RG--VRSIICPSE-GF------------------------ISNAGSLKGVQ-HVILLSQLSVYRGS-------------- 101 (208)
Q Consensus 64 ~~--~d~vi~~~~-~~------------------------~~~a~~~~gv~-~~v~~Ss~~~~~~~-------------- 101 (208)
++ .|+|||+++ .. +.+++.+.+++ ++++.||..++...
T Consensus 87 ~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~~~~~~~~ 166 (393)
T d1i24a_ 87 KSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHN 166 (393)
T ss_dssp HHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSSEEEEEET
T ss_pred HhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccccccccccccccc
Confidence 75 599998732 10 23456666765 56777777665411
Q ss_pred ----------CCcccccchhHHHhHHH-HHHHHHhcCCCEEEEeccccccCCCCc-------------------------
Q 028525 102 ----------GGIQALMKGNARKLAEQ-DESMLMASGIPYTIIRTGVLQNTPGGK------------------------- 145 (208)
Q Consensus 102 ----------~~~~~~~~~~~~~~~~~-~e~~l~~~~~~~tivRp~~~~~~~~~~------------------------- 145 (208)
.|.++|.. .|..++. +..+.+..+++++++||+.+++.....
T Consensus 167 ~~~~~~~~~~~p~~~Y~~--sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 244 (393)
T d1i24a_ 167 GRTDTLPYPKQASSFYHL--SKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFC 244 (393)
T ss_dssp TEEEEEECCCCCCSHHHH--HHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHHHHHH
T ss_pred ccccccccccccccHHHH--HhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccccchhhhh
Confidence 11112222 3333321 223334679999999999998643210
Q ss_pred ------ccee-eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC-C-cchhhHHHHHHHHhhhc
Q 028525 146 ------QGFQ-FEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNG-E-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 146 ------~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~-~-~~~~e~~~~~~~~~~~~ 206 (208)
..+. ++.+.+...+++++|+++++..+++++...+..+.+..+ . .++.|+++++.++.++.
T Consensus 245 ~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~ 314 (393)
T d1i24a_ 245 VQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKL 314 (393)
T ss_dssp HHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTT
T ss_pred HHhhcCCeeEEeeecccccccccccchHHHHHHHHHhhcccceeeeecCCCCeeEHHHHHHHHHHHHHhh
Confidence 0011 122333356899999999999999988776654443322 3 48899999999887653
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.79 E-value=1.4e-18 Score=135.92 Aligned_cols=197 Identities=9% Similarity=-0.059 Sum_probs=126.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-----hh-------hhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-----AM-------ESFGTYVESMAGDASNKKFLKTALR--GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-----~~-------~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~ 73 (208)
++||+||++|+++|+++||+|++++|..+. .. ......++++.+|+++.+.+.+.++ ++|+|||++
T Consensus 8 GatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~D~Vih~A 87 (339)
T d1n7ha_ 8 GITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPDEVYNLA 87 (339)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhccchhhhcc
Confidence 579999999999999999999999996432 11 1112357899999999999999885 579999873
Q ss_pred C--Cc--------------------hhhhhhh-----cCCCeEEEeceeeeccC-------CCCcccccchh-HHHhHH-
Q 028525 74 E--GF--------------------ISNAGSL-----KGVQHVILLSQLSVYRG-------SGGIQALMKGN-ARKLAE- 117 (208)
Q Consensus 74 ~--~~--------------------~~~a~~~-----~gv~~~v~~Ss~~~~~~-------~~~~~~~~~~~-~~~~~~- 117 (208)
+ .. ...+++. ....++++.||...+.. ..+..|...+. .|...+
T Consensus 88 a~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~ 167 (339)
T d1n7ha_ 88 AQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHW 167 (339)
T ss_dssp SCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTTSCCCCCSHHHHHHHHHHH
T ss_pred ccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCCCCCCCCCCCCCcchhhHHHHHHHH
Confidence 2 11 1122322 23446777777666542 12222322221 333332
Q ss_pred HHHHHHHhcCCCEEEEeccccccCCCCc-------------------cceeeecCCcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 118 QDESMLMASGIPYTIIRTGVLQNTPGGK-------------------QGFQFEEGCAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 118 ~~e~~l~~~~~~~tivRp~~~~~~~~~~-------------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
.+..+.+..+++++++||+.+++..... ....++.+.+...+++.+|+|+++..+++++..
T Consensus 168 ~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~a~~~~~~~~~~~~ 247 (339)
T d1n7ha_ 168 YTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKP 247 (339)
T ss_dssp HHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccceeeehHHHHHHHHHhcCCC
Confidence 1333445579999999999998742111 011122233345678999999999999987754
Q ss_pred CCcEEEEeeCC-cchhhHHHHHHHHhhhc
Q 028525 179 TGLIFEVVNGE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 179 ~~~~~~i~~~~-~~~~e~~~~~~~~~~~~ 206 (208)
..+++..+. .+..++++.+.+..+..
T Consensus 248 --~~~~~~~~~~~s~~~~~~~~~~~~~~~ 274 (339)
T d1n7ha_ 248 --DDYVVATEEGHTVEEFLDVSFGYLGLN 274 (339)
T ss_dssp --CEEEECCSCEEEHHHHHHHHHHHTTCC
T ss_pred --Cccccccccccccchhhhhhhhhhhcc
Confidence 334444444 58899999999888754
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.78 E-value=3.3e-18 Score=130.29 Aligned_cols=184 Identities=15% Similarity=0.029 Sum_probs=128.8
Q ss_pred hhhc--cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCCCc---
Q 028525 4 MKKM--KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSEGF--- 76 (208)
Q Consensus 4 ~~~~--~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~~--- 76 (208)
||.+ ++||+||++|+++|.++||+|++++|+. .|+.|.+++.++++ +.|+||+++...
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~---------------~D~~d~~~~~~~l~~~~~d~vih~a~~~~~~ 66 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD---------------LDITNVLAVNKFFNEKKPNVVINCAAHTAVD 66 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT---------------CCTTCHHHHHHHHHHHCCSEEEECCCCCCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh---------------ccCCCHHHHHHHHHHcCCCEEEeeccccccc
Confidence 5543 6799999999999999999999998763 48999999999997 569999883211
Q ss_pred h------------------hhhhhhcCCCeEEEeceeeeccCC--------CCcccccchhHHHhHHHHHHHHHhcCCCE
Q 028525 77 I------------------SNAGSLKGVQHVILLSQLSVYRGS--------GGIQALMKGNARKLAEQDESMLMASGIPY 130 (208)
Q Consensus 77 ~------------------~~a~~~~gv~~~v~~Ss~~~~~~~--------~~~~~~~~~~~~~~~~~~e~~l~~~~~~~ 130 (208)
. ..........+++++||..++... .+..+...+ ...+...|+++++.+.++
T Consensus 67 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ss~~v~~~~~~~~~~e~~~~~~~~~~--~~~k~~~e~~~~~~~~~~ 144 (281)
T d1vl0a_ 67 KCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEFDEVNPQSAY--GKTKLEGENFVKALNPKY 144 (281)
T ss_dssp HHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTTSCCCCCSHH--HHHHHHHHHHHHHHCSSE
T ss_pred cccccchhhcccccccccccccccccccccccccccceeeeccccccccccccccchhhh--hhhhhHHHHHHHHhCCCc
Confidence 0 011122334467778887766521 112222221 112235688888999999
Q ss_pred EEEeccccccCCCCc----------cceeeecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC-cchhhHHHHH
Q 028525 131 TIIRTGVLQNTPGGK----------QGFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE-EKVSDWKKCF 199 (208)
Q Consensus 131 tivRp~~~~~~~~~~----------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~-~~~~e~~~~~ 199 (208)
+++||+++++..... .......++....+++.+|+++++..+++++.. ..|++++++ .+..|+++.+
T Consensus 145 ~i~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~--g~~~~~~~~~~s~~e~~~~i 222 (281)
T d1vl0a_ 145 YIVRTAWLYGDGNNFVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVIDEKNY--GTFHCTCKGICSWYDFAVEI 222 (281)
T ss_dssp EEEEECSEESSSSCHHHHHHHHHHHCSEEEEESSCEECCEEHHHHHHHHHHHHHHTCC--EEEECCCBSCEEHHHHHHHH
T ss_pred cccceeEEeCCCcccccchhhhhccCCceeecCCceeccchhhhhhhhhhhhhhhccc--CceeEeCCCccchHHHHHHH
Confidence 999999998653211 111112334456789999999999999987653 589988766 4999999999
Q ss_pred HHHhhhc
Q 028525 200 SRLMEKT 206 (208)
Q Consensus 200 ~~~~~~~ 206 (208)
.+.+|++
T Consensus 223 ~~~~g~~ 229 (281)
T d1vl0a_ 223 FRLTGID 229 (281)
T ss_dssp HHHHCCC
T ss_pred HHHhCCC
Confidence 9999875
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.78 E-value=4.7e-18 Score=132.53 Aligned_cols=202 Identities=12% Similarity=-0.008 Sum_probs=132.4
Q ss_pred hhccccCccHHHHHHHHHhCCCcEEEEEcCch--h---hhh-hcCCceEEEEcCCCCHHHHHHHhcCC--CEEEEcCC-C
Q 028525 5 KKMKRKKMNFRMVILSLIVKRTRIKALVKDKR--N---AME-SFGTYVESMAGDASNKKFLKTALRGV--RSIICPSE-G 75 (208)
Q Consensus 5 ~~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~--~---~~~-~~~~~v~~v~~Dl~d~~~l~~~~~~~--d~vi~~~~-~ 75 (208)
.+.++||+||++|+++|+++||+|++++|-.. . ... ....+++++.+|++|.+.+.++++++ |+|||++. .
T Consensus 4 LVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa~~ 83 (338)
T d1orra_ 4 LITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQV 83 (338)
T ss_dssp EEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred EEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeecccc
Confidence 34578999999999999999999999874221 1 111 12357999999999999999999864 99998722 1
Q ss_pred c---------------------hhhhhhhcCCCeEEEeceeeeccCCC-------------------------Ccccccc
Q 028525 76 F---------------------ISNAGSLKGVQHVILLSQLSVYRGSG-------------------------GIQALMK 109 (208)
Q Consensus 76 ~---------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~-------------------------~~~~~~~ 109 (208)
. +.+++.+.+++++++.||.+++.... +..+...
T Consensus 84 ~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (338)
T d1orra_ 84 AMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSP 163 (338)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCCCCHH
T ss_pred cccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCccccccc
Confidence 1 23567788888777777665432110 0001111
Q ss_pred h-hHHHhHH-HHHHHHHhcCCCEEEEeccccccCCCCc----------------------ccee-eecCCcCCCcccHHH
Q 028525 110 G-NARKLAE-QDESMLMASGIPYTIIRTGVLQNTPGGK----------------------QGFQ-FEEGCAANGSLSKED 164 (208)
Q Consensus 110 ~-~~~~~~~-~~e~~l~~~~~~~tivRp~~~~~~~~~~----------------------~~~~-~~~~~~~~~~v~~~D 164 (208)
+ ..+...+ ....+.+..++..+.+|+..++...... ..+. ++.+.+...+++++|
T Consensus 164 y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~r~~~~v~D 243 (338)
T d1orra_ 164 YGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAED 243 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEHHH
T ss_pred cccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCCCceeEeeecccc
Confidence 1 1121111 1223344578999999987766432211 1111 223334467889999
Q ss_pred HHHHHHHHhhCCC-CCCcEEEEeeCC---cchhhHHHHHHHHhhhc
Q 028525 165 AAFICVEALESIP-QTGLIFEVVNGE---EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 165 va~~~~~~l~~~~-~~~~~~~i~~~~---~~~~e~~~~~~~~~~~~ 206 (208)
++++++.+++++. ..++.|++..+. .++.|+++.+.+.++.+
T Consensus 244 ~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~ 289 (338)
T d1orra_ 244 MISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNID 289 (338)
T ss_dssp HHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCC
T ss_pred hhhHHHHHHhccccccCccccccccccccccHHHHHHHHHHHHCCC
Confidence 9999999998754 467899986544 27889999999988765
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=2e-17 Score=128.05 Aligned_cols=181 Identities=12% Similarity=0.132 Sum_probs=126.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcC---CCc------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPS---EGF------ 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~---~~~------ 76 (208)
++||+||++|+++|+++||.|+++.+.. ..|+.|.+.+.+.++ .+|.|++++ +..
T Consensus 9 G~tGfiG~~l~~~L~~~g~~vi~~~~~~--------------~~~~~~~~~~~~~~~~~~~d~v~~~a~~~~~~~~~~~~ 74 (315)
T d1e6ua_ 9 GHRGMVGSAIRRQLEQRGDVELVLRTRD--------------ELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTY 74 (315)
T ss_dssp TTTSHHHHHHHHHHTTCTTEEEECCCTT--------------TCCTTCHHHHHHHHHHHCCSEEEECCCCCCCHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHCcCEEEEecCch--------------hccccCHHHHHHHHhhcCCCEEEEcchhccccccchhh
Confidence 5799999999999999999998775432 258999999998886 479999772 211
Q ss_pred --------------hhhhhhhcCCCeEEEeceeeeccCCCC--------c--------ccccchhHHHhHHHHHHHH---
Q 028525 77 --------------ISNAGSLKGVQHVILLSQLSVYRGSGG--------I--------QALMKGNARKLAEQDESML--- 123 (208)
Q Consensus 77 --------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~--------~--------~~~~~~~~~~~~~~~e~~l--- 123 (208)
+.++|.+.+++||||+||.++|+...+ . .+|.. .|. ++|+++
T Consensus 75 ~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~--sK~---~~E~~~~~~ 149 (315)
T d1e6ua_ 75 PADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAI--AKI---AGIKLCESY 149 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHH--HHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHH--HHH---HHHHHHHHH
Confidence 235677889999999999999863211 0 01211 222 345544
Q ss_pred -HhcCCCEEEEeccccccCCCCc-----------------------cc-eeeecCCcCCCcccHHHHHHHHHHHhhCCC-
Q 028525 124 -MASGIPYTIIRTGVLQNTPGGK-----------------------QG-FQFEEGCAANGSLSKEDAAFICVEALESIP- 177 (208)
Q Consensus 124 -~~~~~~~tivRp~~~~~~~~~~-----------------------~~-~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~- 177 (208)
++.+++++++||+.+++..... .. ...+.+.+...+++.+|++.++..+++...
T Consensus 150 ~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v~d~~~~~~~~~~~~~~ 229 (315)
T d1e6ua_ 150 NRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHE 229 (315)
T ss_dssp HHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCHH
T ss_pred HHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEeehhHHHHHHhhhhccc
Confidence 4569999999999998742110 00 111223334577899999999999886542
Q ss_pred -------CCCcEEEEeeCCc-chhhHHHHHHHHhhhcC
Q 028525 178 -------QTGLIFEVVNGEE-KVSDWKKCFSRLMEKTG 207 (208)
Q Consensus 178 -------~~~~~~~i~~~~~-~~~e~~~~~~~~~~~~~ 207 (208)
.....++++.+.. ++.++++.+.++++.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~ 267 (315)
T d1e6ua_ 230 VWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKG 267 (315)
T ss_dssp HHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCS
T ss_pred cccccccccccccccCCCcchHHHHHHHHHHHHhCCCc
Confidence 2346688876664 88999999999887653
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.72 E-value=1.4e-17 Score=122.18 Aligned_cols=158 Identities=13% Similarity=0.061 Sum_probs=103.3
Q ss_pred ccccCccHHHHHHHHHhCCC--cEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-CCCEEEEcCCCc-------
Q 028525 7 MKRKKMNFRMVILSLIVKRT--RIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-GVRSIICPSEGF------- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~--~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-~~d~vi~~~~~~------- 76 (208)
-++||+||++|+++|+++|| +|++++|++.... ..+ ..+..|..++...+. .+|+||++.+..
T Consensus 8 tGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~----~~~---~~~~~d~~~~~~~~~~~~d~vi~~~g~~~~~~~~~ 80 (212)
T d2a35a1 8 AGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH----PRL---DNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGSE 80 (212)
T ss_dssp ECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC----TTE---ECCBSCHHHHGGGCCSCCSEEEECCCCCHHHHSSH
T ss_pred ECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc----ccc---cccccchhhhhhccccchheeeeeeeeeccccccc
Confidence 46899999999999999998 5666666543211 123 344555555444544 579999873211
Q ss_pred -------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCC-EEEEeccccccCC
Q 028525 77 -------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIP-YTIIRTGVLQNTP 142 (208)
Q Consensus 77 -------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~-~tivRp~~~~~~~ 142 (208)
+.++++..++++|+++||.+++... ...|.. . +..+|+.+++.+++ |+++||+.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~~~--~~~y~~--~---K~~~E~~l~~~~~~~~~I~Rp~~v~G~~ 153 (212)
T d2a35a1 81 EAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAKS--SIFYNR--V---KGELEQALQEQGWPQLTIARPSLLFGPR 153 (212)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTTC--SSHHHH--H---HHHHHHHHTTSCCSEEEEEECCSEESTT
T ss_pred cccccchhhhhhhccccccccccccccccccccccccc--ccchhH--H---HHHHhhhccccccccceeeCCcceeCCc
Confidence 3456788999999999999877532 222322 2 22568889888885 9999999998754
Q ss_pred CCccce-eeecC-----CcCCCcccHHHHHHHHHHHhhCCCC
Q 028525 143 GGKQGF-QFEEG-----CAANGSLSKEDAAFICVEALESIPQ 178 (208)
Q Consensus 143 ~~~~~~-~~~~~-----~~~~~~v~~~Dva~~~~~~l~~~~~ 178 (208)
...... .+... .....+|+++|+|++++.+++++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~i~v~DvA~ai~~~~~~~~~ 195 (212)
T d2a35a1 154 EEFRLAEILAAPIARILPGKYHGIEACDLARALWRLALEEGK 195 (212)
T ss_dssp SCEEGGGGTTCCCC----CHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred ccccHHHHHHHHHhhccCCCCcEEEHHHHHHHHHHHHcCCCC
Confidence 322100 00000 1113458999999999999987654
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.64 E-value=1.9e-15 Score=118.55 Aligned_cols=199 Identities=11% Similarity=0.024 Sum_probs=122.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh-----hcCCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCC-C-c--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME-----SFGTYVESMAGDASNKKFLKTALRG--VRSIICPSE-G-F-- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~-----~~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~-~-~-- 76 (208)
++||+||++|++.|+++||+|++++|+.++... ....+++++.+|++|++.+.+++++ .|+|+++++ . .
T Consensus 15 G~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~~aa~~~~~~ 94 (356)
T d1rkxa_ 15 GHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRL 94 (356)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCCHHH
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhhhhccccccc
Confidence 579999999999999999999999998765221 1234799999999999999999874 588887622 1 0
Q ss_pred ------------------hhhhhhhcCC-CeEEEeceeeeccC---------CCCcccccchh-HHHhHHH-HHHHH---
Q 028525 77 ------------------ISNAGSLKGV-QHVILLSQLSVYRG---------SGGIQALMKGN-ARKLAEQ-DESML--- 123 (208)
Q Consensus 77 ------------------~~~a~~~~gv-~~~v~~Ss~~~~~~---------~~~~~~~~~~~-~~~~~~~-~e~~l--- 123 (208)
+.+++...+. +.+++.|+...+.. ..+..|...+. .+...+. +..+.
T Consensus 95 ~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y~~~k~~~e~~~~~~~~~~ 174 (356)
T d1rkxa_ 95 SYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSF 174 (356)
T ss_dssp HHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccccccCCCCccccccccchhhhhHHhhhc
Confidence 2334555554 45555555444431 11112221111 1111111 11111
Q ss_pred ------HhcCCCEEEEeccccccCCCCc---------------cceeeecCCcCCCcccHHHHHHHHHHHhhCCCCC---
Q 028525 124 ------MASGIPYTIIRTGVLQNTPGGK---------------QGFQFEEGCAANGSLSKEDAAFICVEALESIPQT--- 179 (208)
Q Consensus 124 ------~~~~~~~tivRp~~~~~~~~~~---------------~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~--- 179 (208)
...++.++++||+.+++..... ....++.+.+...+++++|++.++..++.++...
T Consensus 175 ~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~a~~~~~~~~~~~~~~ 254 (356)
T d1rkxa_ 175 FNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAE 254 (356)
T ss_dssp SCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCEETHHHHHHHHHHHHHHHHTCGG
T ss_pred ccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCCCceEEeeccccccccccccccchhhhhhhhhcccccc
Confidence 1357899999999988643211 1112233333456789999999999888765432
Q ss_pred -CcEEEEee--CC-cchhhHHHHHHHHhhhc
Q 028525 180 -GLIFEVVN--GE-EKVSDWKKCFSRLMEKT 206 (208)
Q Consensus 180 -~~~~~i~~--~~-~~~~e~~~~~~~~~~~~ 206 (208)
+...+... +. .+..++++.+.+..+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 285 (356)
T d1rkxa_ 255 YAEGWNFGPNDADATPVKNIVEQMVKYWGEG 285 (356)
T ss_dssp GCSEEECCCCGGGCEEHHHHHHHHHHHHCTT
T ss_pred cccccccccccccccccchhhhhhHHHhCCC
Confidence 33333332 22 37788888888887654
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.61 E-value=4.1e-15 Score=113.54 Aligned_cols=185 Identities=19% Similarity=0.121 Sum_probs=120.1
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC--CCEEEEcCC--Cc------
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG--VRSIICPSE--GF------ 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~--~d~vi~~~~--~~------ 76 (208)
-++||+||++|+++|+++|+.| ++.++... +.+|++|.+.+.+++++ +|+|||+++ ..
T Consensus 6 tG~tGfiG~~l~~~L~~~g~~v-~~~~~~~~-----------~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~~~~~~~~~~ 73 (298)
T d1n2sa_ 6 FGKTGQVGWELQRSLAPVGNLI-ALDVHSKE-----------FCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESE 73 (298)
T ss_dssp ECTTSHHHHHHHHHTTTTSEEE-EECTTCSS-----------SCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTC
T ss_pred ECCCCHHHHHHHHHHHhCCCEE-EEECCCcc-----------ccCcCCCHHHHHHHHHHcCCCEEEEecccccccccccC
Confidence 3689999999999999988755 44443221 24799999999999974 599998732 10
Q ss_pred --------------hhhhhhhcCCCeEEEeceeeeccCC--------CCcccccchhHHHhHHHHHHHHHhcCCCEEEEe
Q 028525 77 --------------ISNAGSLKGVQHVILLSQLSVYRGS--------GGIQALMKGNARKLAEQDESMLMASGIPYTIIR 134 (208)
Q Consensus 77 --------------~~~a~~~~gv~~~v~~Ss~~~~~~~--------~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivR 134 (208)
+.++++..++ ++++.||..++... .+..|...+ ...+..+|++++.....+.++|
T Consensus 74 ~~~~~~~n~~~~~~l~~~~~~~~~-~~~~~ss~~~~~~~~~~~~~E~~~~~p~~~y--~~~k~~~e~~~~~~~~~~~~~~ 150 (298)
T d1n2sa_ 74 PELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETDATSPLNVY--GKTKLAGEKALQDNCPKHLIFR 150 (298)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTSCCCCSSHH--HHHHHHHHHHHHHHCSSEEEEE
T ss_pred ccccccccccccccchhhhhcccc-ccccccccccccCCCCCCCccccccCCCchH--hhhhhhhhhhHHhhhccccccc
Confidence 2334555555 67788887776421 112222221 1123357888888777888888
Q ss_pred ccccccCCCCcc-----------ceeeecCCcCCCcccHHHHHHHHHHHhh---CCCCCCcEEEEeeCC-cchhhHHHHH
Q 028525 135 TGVLQNTPGGKQ-----------GFQFEEGCAANGSLSKEDAAFICVEALE---SIPQTGLIFEVVNGE-EKVSDWKKCF 199 (208)
Q Consensus 135 p~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~Dva~~~~~~l~---~~~~~~~~~~i~~~~-~~~~e~~~~~ 199 (208)
++.++...+... ......+.....+++.+|+++++..++. .....+.+||+++++ .+..++++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~~~~~~~~~~~~n~~~~~~~~~~~~~~~i 230 (298)
T d1n2sa_ 151 TSWVYAGKGNNFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALV 230 (298)
T ss_dssp ECSEECSSSCCHHHHHHHHHHHCSEEEEECSCEECCEEHHHHHHHHHHHHHHHHHCGGGCEEEECCCBSCEEHHHHHHHH
T ss_pred ccceeeccCCccchhhhhhhcccceeecccceeecccccchHHHHHHHHHhhhhccccccccccccCCCceecHHHHHHH
Confidence 877765543221 0111123334567888999998887764 233456889999865 4889999988
Q ss_pred HHHhhhc
Q 028525 200 SRLMEKT 206 (208)
Q Consensus 200 ~~~~~~~ 206 (208)
.+..++.
T Consensus 231 ~~~~~~~ 237 (298)
T d1n2sa_ 231 FDEARKA 237 (298)
T ss_dssp HHHHHHH
T ss_pred Hhhhhcc
Confidence 8877654
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.58 E-value=2.8e-14 Score=106.47 Aligned_cols=187 Identities=13% Similarity=0.089 Sum_probs=121.7
Q ss_pred chhhhc-----cccCccHHHHHHHHHhCCCcEEEEEcCchhhh---hhcCCceEEEEcCCCCHHHHHHHhc-------CC
Q 028525 2 GPMKKM-----KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM---ESFGTYVESMAGDASNKKFLKTALR-------GV 66 (208)
Q Consensus 2 ~~~~~~-----~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~---~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~ 66 (208)
|.++++ +.++.||+++++.|+++|++|.+.+|++++.. +..+..+.++.+|++|++++.++++ ..
T Consensus 2 G~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 81 (244)
T d1nffa_ 2 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGL 81 (244)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 555443 35778999999999999999999999987643 2334578899999999998887763 46
Q ss_pred CEEEEcCC----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--H
Q 028525 67 RSIICPSE----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--K 114 (208)
Q Consensus 67 d~vi~~~~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~ 114 (208)
|++|++++ +. ....+.+.+-.+||++||.....+......|...++- .
T Consensus 82 dilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~~ 161 (244)
T d1nffa_ 82 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRG 161 (244)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHH
T ss_pred eEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccccccccccchhhHHHHHHH
Confidence 99997732 11 0122445566799999998876554444556553321 1
Q ss_pred hHHHHHHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 115 LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 115 ~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
+.+..-..+...++++..|.||.+..+......... ...+...+...+|+|.+++.++.+.. -.|+++.+.+|-
T Consensus 162 ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~-~~~pl~R~~~p~diA~~v~fL~s~~s~~itG~~i~vDGG~ 237 (244)
T d1nffa_ 162 LTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPEDI-FQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGT 237 (244)
T ss_dssp HHHHHHHHHGGGTEEEEEEEECCBCSGGGTTSCTTC-SCCSSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHHhcccCEEEEEEeeCCccChhHhhhhHHH-HhccccCCCCHHHHHHHHHHHhChhhCCCcCCEEEECCCe
Confidence 111122334457999999999987532211100000 00112335678999999999886443 347888887554
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=4.1e-14 Score=108.22 Aligned_cols=192 Identities=11% Similarity=0.012 Sum_probs=105.8
Q ss_pred hhccccCccHHHHHHHHHhCCC-cEEEEEcCch--hhhhhcCCceEEEEcCCCCHHHHH-H-----HhcCCCEEEEcCC-
Q 028525 5 KKMKRKKMNFRMVILSLIVKRT-RIKALVKDKR--NAMESFGTYVESMAGDASNKKFLK-T-----ALRGVRSIICPSE- 74 (208)
Q Consensus 5 ~~~~~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~--~~~~~~~~~v~~v~~Dl~d~~~l~-~-----~~~~~d~vi~~~~- 74 (208)
...+++|+||++|+++|+++|+ +|+++++-.. +........ ..|..+.+.+. . .+..+++|++++.
T Consensus 3 LITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~ 78 (307)
T d1eq2a_ 3 IVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLN----IADYMDKEDFLIQIMAGEEFGDVEAIFHEGAC 78 (307)
T ss_dssp EEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSC----CSEEEEHHHHHHHHHTTCCCSSCCEEEECCSC
T ss_pred EEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccccc----hhhhccchHHHHHHhhhhcccchhhhhhhccc
Confidence 3457899999999999999995 7888863322 222221111 12222222222 2 2245678887621
Q ss_pred -C---c---------------hhhhhhhcCCCeEEEeceeeecc-CCC----------CcccccchhHHHhHH-HHHHHH
Q 028525 75 -G---F---------------ISNAGSLKGVQHVILLSQLSVYR-GSG----------GIQALMKGNARKLAE-QDESML 123 (208)
Q Consensus 75 -~---~---------------~~~a~~~~gv~~~v~~Ss~~~~~-~~~----------~~~~~~~~~~~~~~~-~~e~~l 123 (208)
. . ...++...+++ +++.||..++. +.. +...|.. .|...+ .++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~-~v~~ss~~~~~~~~~~~~~~~~~~~~~~~Y~~--~K~~~e~~~~~~~ 155 (307)
T d1eq2a_ 79 SSTTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYASSAATYGGRTSDFIESREYEKPLNVYGY--SKFLFDEYVRQIL 155 (307)
T ss_dssp CCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC-EEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHH--HHHHHHHHHHHHG
T ss_pred cccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccc--ccchhhhhccccc
Confidence 1 0 23456667786 45555555443 111 1122221 232222 123333
Q ss_pred HhcCCCEEEEeccccccCCCCcc------------------cee--eecCCcCCCcccHHHHHHHHHHHhhCCCCCCcEE
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQ------------------GFQ--FEEGCAANGSLSKEDAAFICVEALESIPQTGLIF 183 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~------------------~~~--~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~ 183 (208)
++.+++++++||+.+++...... ... .+.+.....+++.+|++.++..+++++. +..|
T Consensus 156 ~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~~~~~~~--~~~~ 233 (307)
T d1eq2a_ 156 PEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV--SGIF 233 (307)
T ss_dssp GGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCC--CEEE
T ss_pred cccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeeeecccHHHHHHHHhhhcc--cccc
Confidence 45799999999999886432110 000 1222334577899999999999887654 5689
Q ss_pred EEeeCCc-chhhHHHHHHHHhhh
Q 028525 184 EVVNGEE-KVSDWKKCFSRLMEK 205 (208)
Q Consensus 184 ~i~~~~~-~~~e~~~~~~~~~~~ 205 (208)
+++++.. +++|+++.+.+..++
T Consensus 234 ~~~~~~~~si~~i~~~i~~~~~~ 256 (307)
T d1eq2a_ 234 NLGTGRAESFQAVADATLAYHKK 256 (307)
T ss_dssp EESCSCCBCHHHHHHHC------
T ss_pred ccccccchhHHHHHHHHHHhcCC
Confidence 9987774 999999988776553
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=1.7e-13 Score=102.19 Aligned_cols=181 Identities=12% Similarity=0.131 Sum_probs=118.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh---hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM---ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~---~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
++++.||+++++.|+++|++|.+.+|+++++. +..+.+...+.+|++|++++.++++ +.|++|++++
T Consensus 11 Gas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnAg~~~ 90 (243)
T d1q7ba_ 11 GASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITR 90 (243)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSEEEECCCCCC
T ss_pred CCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCcceehhhhhhcc
Confidence 45789999999999999999999999987643 2334568889999999998888774 4799997732
Q ss_pred -Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 75 -GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 75 -~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
+. ....+.+++-.+||++||.....+......|...++-. +.+..-..+..
T Consensus 91 ~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~ela~ 170 (243)
T d1q7ba_ 91 DNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVAS 170 (243)
T ss_dssp CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhCc
Confidence 11 01234556667999999987765444445565533211 11112233445
Q ss_pred cCCCEEEEeccccccCCCC---ccc-eeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 126 SGIPYTIIRTGVLQNTPGG---KQG-FQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~---~~~-~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.++++..|.||.+...... ... ..+....+...+...+|+|.+++.++.+.. ..|+.+.+.+|
T Consensus 171 ~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itGq~i~vdGG 239 (243)
T d1q7ba_ 171 RGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIANAVAFLASDEAAYITGETLHVNGG 239 (243)
T ss_dssp GTEEEEEEEECSBCCHHHHTSCHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCeEEEEEecceEechhhhhhhhhHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 7999999999987432110 000 001111122345578999999999886543 35788887754
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.48 E-value=6.3e-13 Score=99.22 Aligned_cols=181 Identities=12% Similarity=0.022 Sum_probs=115.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh----hhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA----MESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG- 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~----~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~- 75 (208)
++++.||+++++.|+++|++|.+.+|++.+. .+..+.++..+.+|++|++++.++++ +.|++|++++.
T Consensus 12 Gas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDilVnnAG~~ 91 (247)
T d2ew8a1 12 GGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIY 91 (247)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3578899999999999999999999987542 22345578899999999999888763 57999977321
Q ss_pred ---c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHH
Q 028525 76 ---F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLM 124 (208)
Q Consensus 76 ---~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~ 124 (208)
. ....+.+.+-.++|++||.....+......|..+++-. +.+..-..+.
T Consensus 92 ~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~ltk~lA~ela 171 (247)
T d2ew8a1 92 PLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLG 171 (247)
T ss_dssp CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCSSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccCcccccchhhhccHHHHHHHHHHHhc
Confidence 1 11235556667999999988765544445565543211 1121223344
Q ss_pred hcCCCEEEEeccccccCCCCccce--e---eecC-CcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 125 ASGIPYTIIRTGVLQNTPGGKQGF--Q---FEEG-CAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~~~~--~---~~~~-~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..++++..|.||++.......... . .... .+...+...+|+|.+++.++.+.. -.|+++.+.+|
T Consensus 172 ~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~l~r~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 243 (247)
T d2ew8a1 172 KDGITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVPLDLTGAAAFLASDDASFITGQTLAVDGG 243 (247)
T ss_dssp GGTEEEEEEEECCC------------------CTTSSSCSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSS
T ss_pred ccCeEEEEEeeCCCCCccccccccchhHHHHHHHhccCCCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 579999999999885332111000 0 0000 011223456999999998886543 24788887755
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.48 E-value=5.2e-13 Score=99.92 Aligned_cols=181 Identities=16% Similarity=0.153 Sum_probs=117.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
++++.||++++++|+++|++|.+..|+.+++.+ ..+.++..+.+|++|++++.++++ ..|++|++++
T Consensus 17 Gas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnag 96 (251)
T d2c07a1 17 GAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNVDILVNNAG 96 (251)
T ss_dssp STTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCceeeeeccc
Confidence 357789999999999999999999998776321 123468899999999999888774 5699997722
Q ss_pred C----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHHH
Q 028525 75 G----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDESM 122 (208)
Q Consensus 75 ~----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~~ 122 (208)
. . ....+.+.+-.+||++||.....+......|..+++ ..+.+..-..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaal~~ltr~lA~e 176 (251)
T d2c07a1 97 ITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKE 176 (251)
T ss_dssp CCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 0 012345566679999999877654444455655432 1111212233
Q ss_pred HHhcCCCEEEEeccccccCCCCccc--e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 123 LMASGIPYTIIRTGVLQNTPGGKQG--F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 123 l~~~~~~~tivRp~~~~~~~~~~~~--~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+...|+++..|.||++......... . .+....+...+...+|+|.+++.++.+.. -.|+++.+.+|
T Consensus 177 l~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 248 (251)
T d2c07a1 177 LASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIPAGRMGTPEEVANLACFLSSDKSGYINGRVFVIDGG 248 (251)
T ss_dssp HGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hhhhCeEEEEEccCCEecccccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECCC
Confidence 4457999999999998543221100 0 01111122334567999999998886543 24788887654
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.48 E-value=1.4e-13 Score=103.16 Aligned_cols=182 Identities=13% Similarity=0.058 Sum_probs=117.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
++++-||++++++|+++|++|.+.+|+.++..+ ..+..+.++.+|++|++++.++++ ..|++|++++
T Consensus 12 Gas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnAg~~~ 91 (254)
T d1hdca_ 12 GGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGIST 91 (254)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccEEEecCcccc
Confidence 457889999999999999999999999876432 234568999999999999888763 5799997732
Q ss_pred -Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHHHHHh
Q 028525 75 -GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDESMLMA 125 (208)
Q Consensus 75 -~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~~l~~ 125 (208)
.. ....+++.+-.+||++||.....+......|...++ ..+.+..-..+..
T Consensus 92 ~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~e~a~ 171 (254)
T d1hdca_ 92 GMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGT 171 (254)
T ss_dssp CSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcccccchhhHHHHHHHHHHHHHHHHHHhCC
Confidence 11 012245566679999999987665544555655332 1111212223445
Q ss_pred cCCCEEEEeccccccCCCCccceeeec---CCcCCCcc--cHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQGFQFEE---GCAANGSL--SKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~~~~~~~---~~~~~~~v--~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.++++..|.||++.............. .....+.+ ..+|||.+++.++.+.. -.|+++.+.+|-
T Consensus 172 ~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~g~~PedvA~~v~fL~S~~a~~itG~~i~vDGG~ 242 (254)
T d1hdca_ 172 DRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGGW 242 (254)
T ss_dssp GTEEEEEEEECSBCCHHHHHHTCCCSTTSCTTSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CceEEEEeeeCcccCccchhcCHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHhchhhCCCCCceEEeCCCc
Confidence 799999999998743210000000000 01112222 36999999999886443 358888887654
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.46 E-value=4.9e-13 Score=99.88 Aligned_cols=181 Identities=10% Similarity=-0.014 Sum_probs=115.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----Cc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE----GF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----~~ 76 (208)
+.++.||++++++|+++|++|.+..|+++........+...+++|++|++++.++++ +.|++|++++ +.
T Consensus 12 Gas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~ 91 (248)
T d2d1ya1 12 GGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGS 91 (248)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEEeCcCCCCCC
Confidence 357789999999999999999999998765322212246788999999988887763 4699997732 11
Q ss_pred --------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHHHHhcCC
Q 028525 77 --------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESMLMASGI 128 (208)
Q Consensus 77 --------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~l~~~~~ 128 (208)
....+++++-.+||++||.....+......|...++- .+.+..-..+...++
T Consensus 92 ~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~~ltk~lA~el~~~gI 171 (248)
T d2d1ya1 92 ALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRI 171 (248)
T ss_dssp TTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCTTBHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred hhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhCc
Confidence 0123555666799999999877654445556553321 111111233445799
Q ss_pred CEEEEeccccccCCC-----C--c-ccee--eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 129 PYTIIRTGVLQNTPG-----G--K-QGFQ--FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 129 ~~tivRp~~~~~~~~-----~--~-~~~~--~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
++..|.||++..+.. . . .... +....+.......+|+|.+++.++.+.. -.|+.+.+.+|
T Consensus 172 rVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG 243 (248)
T d2d1ya1 172 RVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLFLASEKASFITGAILPVDGG 243 (248)
T ss_dssp EEEEEEECSBCCHHHHHHHC--------CHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEcCcC
Confidence 999999998742110 0 0 0000 1111112334567999999999886443 34788888754
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.2e-12 Score=97.42 Aligned_cols=181 Identities=13% Similarity=0.014 Sum_probs=116.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh--cCCceEEEEcCCCCHHHHHHHhc---CCCEEEEcCCC----ch-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES--FGTYVESMAGDASNKKFLKTALR---GVRSIICPSEG----FI- 77 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~---~~d~vi~~~~~----~~- 77 (208)
++++.||++++++|+++|++|.+.+|+.+++.+. ...++..+.+|++|++++.++++ ..|++|++++. .+
T Consensus 14 Gas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnnAg~~~~~~~~ 93 (244)
T d1pr9a_ 14 GAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNAAVALLQPFL 93 (244)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECCCCCCCBCGG
T ss_pred CCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEeccccccccchh
Confidence 4588999999999999999999999998774332 12468899999999999999986 45999977321 10
Q ss_pred -------------------------hh-hhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHHHHhcCCC
Q 028525 78 -------------------------SN-AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESMLMASGIP 129 (208)
Q Consensus 78 -------------------------~~-a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~l~~~~~~ 129 (208)
.. .+++.+-.++|++||.....+......|...++- .+.+..-..+...+++
T Consensus 94 ~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIr 173 (244)
T d1pr9a_ 94 EVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIR 173 (244)
T ss_dssp GCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred hhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccccchhhhhhhHHHHHHHHHHHHHHhCCCcEE
Confidence 11 1234455689999998876544444455543321 1111111234457999
Q ss_pred EEEEeccccccCCC----Cccc-e-eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 130 YTIIRTGVLQNTPG----GKQG-F-QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 130 ~tivRp~~~~~~~~----~~~~-~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+..|.||.+..... .... . .+....+...+...+|+|.+++.++.+.. -.|+++.+.+|
T Consensus 174 vN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~R~~~peevA~~v~fL~S~~a~~itG~~i~vDGG 240 (244)
T d1pr9a_ 174 VNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240 (244)
T ss_dssp EEEEEECCBCSHHHHTTSCSHHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEEEeeCcCcChHHhhhccChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCcCCcEEEECcc
Confidence 99999998853211 0000 0 01111122345577999999998886543 34788877644
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=9.7e-13 Score=98.64 Aligned_cols=182 Identities=10% Similarity=0.050 Sum_probs=117.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~ 75 (208)
+++.||++++++|+++|++|.+..|+.++..+ ..+.++..+.+|++|++++.++++ +.|++|++++.
T Consensus 19 as~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~iDilvnnAG~ 98 (255)
T d1fmca_ 19 AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGG 98 (255)
T ss_dssp TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEeeeCCcC
Confidence 47889999999999999999999999876321 124568899999999998877763 57999977321
Q ss_pred c-----------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHHHH
Q 028525 76 F-----------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESMLM 124 (208)
Q Consensus 76 ~-----------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~l~ 124 (208)
. ....+.+.+-.++|++||.....+......|...++- .+.+..-..+.
T Consensus 99 ~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~ 178 (255)
T d1fmca_ 99 GGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLG 178 (255)
T ss_dssp CCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhccccccccchhHHHHHHHHHHHHHHHhC
Confidence 1 0122445566689999998876654445556553321 11122223345
Q ss_pred hcCCCEEEEeccccccCCCC---ccce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCCc
Q 028525 125 ASGIPYTIIRTGVLQNTPGG---KQGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGEE 190 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~---~~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~~ 190 (208)
..++++..|.||++...... .... .+....+...+...+|+|.+++.++.+.. -.|+++.+.+|-.
T Consensus 179 ~~gIrVN~I~PG~i~T~~~~~~~~~e~~~~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~itG~~i~vDGG~~ 251 (255)
T d1fmca_ 179 EKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGGV 251 (255)
T ss_dssp TTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred ccCeEEEEeeeCcCcChHhhccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECcCcc
Confidence 67999999999987432100 0000 01111122334467999999999886443 3578888886653
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.42 E-value=1.8e-12 Score=96.89 Aligned_cols=181 Identities=13% Similarity=0.111 Sum_probs=115.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---h--cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---S--FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~--~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~- 74 (208)
++++.||+++++.|+++|++|.+..|+.++..+ . .+.++.++.+|++|++++.++++ +.|++|++++
T Consensus 13 Gas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAg~ 92 (251)
T d1zk4a1 13 GGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGI 92 (251)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCceEEEecccc
Confidence 457789999999999999999999998876322 1 13468999999999998887764 4699997732
Q ss_pred ---Cc--------------------------hhhhhhhcCCC-eEEEeceeeeccCCCCcccccchhHHH--hHH--HHH
Q 028525 75 ---GF--------------------------ISNAGSLKGVQ-HVILLSQLSVYRGSGGIQALMKGNARK--LAE--QDE 120 (208)
Q Consensus 75 ---~~--------------------------~~~a~~~~gv~-~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~--~~e 120 (208)
+. ....+.+.+.. ++|++||.....+......|...++-. +.+ +.|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~e 172 (251)
T d1zk4a1 93 AVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALD 172 (251)
T ss_dssp CCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccCCCchhHHHHHHHHhcchHHHHHH
Confidence 11 01224455554 889999988765444444565543211 111 123
Q ss_pred HHHHhcCCCEEEEeccccccCC----CCcccee-eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTP----GGKQGFQ-FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~----~~~~~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..+...++++..|.||++.... ....... .....+.......+|+|.+++.++.+.. -.|+.+.+.+|
T Consensus 173 ~~l~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 247 (251)
T d1zk4a1 173 CALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEPNDIAYICVYLASNESKFATGSEFVVDGG 247 (251)
T ss_dssp HHHTTCSEEEEEEEECCBCCHHHHTSTTHHHHHTSTTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HhcCCCcEEEEEEeCCCCCChhHHhcCCHHHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECcc
Confidence 3355679999999999884311 0000000 0011112334467999999998886543 24788887754
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.41 E-value=1.4e-12 Score=98.04 Aligned_cols=181 Identities=13% Similarity=0.050 Sum_probs=114.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-h-------hhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-A-------MESFGTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~-------~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
++++-||++++++|+++|++|.+..|+... . .+..+.++.++.+|++|++++.++++ +.|++|++
T Consensus 11 Gas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnn 90 (260)
T d1x1ta1 11 GSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNN 90 (260)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHhCCCcEEEee
Confidence 357789999999999999999999997532 1 11224578899999999999988874 47999977
Q ss_pred CC----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 73 SE----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 73 ~~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
++ +. ....+++.+-.++|++||.....+......|...++-. +.+..-
T Consensus 91 AG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA 170 (260)
T d1x1ta1 91 AGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTA 170 (260)
T ss_dssp CCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceeccCCcchhhhhhhhHHHhHHHHH
Confidence 32 11 11234556667999999998766544445565533211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc--------cee--------eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcE
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ--------GFQ--------FEEGCAANGSLSKEDAAFICVEALESIP--QTGLI 182 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~--------~~~--------~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~ 182 (208)
..+...++++..|.||++..+..... ... +....+...+...+|+|.+++.++.+.. -.|++
T Consensus 171 ~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pediA~~v~fL~S~~a~~itG~~ 250 (260)
T d1x1ta1 171 LETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGTT 250 (260)
T ss_dssp HHHTTTTEEEEEEEECCBCC------------------------CHHHHCTTCCCBCHHHHHHHHHHHHSGGGTTCCSCE
T ss_pred HHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhCCCcCCE
Confidence 22345789999999998753221110 000 0000111234467999999999886543 34788
Q ss_pred EEEeeC
Q 028525 183 FEVVNG 188 (208)
Q Consensus 183 ~~i~~~ 188 (208)
+.+.+|
T Consensus 251 i~vDGG 256 (260)
T d1x1ta1 251 VSVDGG 256 (260)
T ss_dssp EEESTT
T ss_pred EEECcc
Confidence 887754
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.40 E-value=1.1e-12 Score=97.33 Aligned_cols=176 Identities=11% Similarity=0.074 Sum_probs=111.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC----c
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG----F 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~----~ 76 (208)
++++.||++++++|+++|++|.+..|+.++.. ++..+++|++|++++.++++ ..|++|++++. .
T Consensus 14 Gas~GIG~aia~~la~~Ga~V~~~~r~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG~~~~~~ 88 (237)
T d1uzma1 14 GGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK-----GLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAF 88 (237)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-----TSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECSCCC---
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCcchhc-----CceEEEEecCCHHHHHHHHHHHHHhcCCceEEEeeeccccccc
Confidence 45889999999999999999999999876533 46778999999998887763 46999976321 1
Q ss_pred --------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHhcCC
Q 028525 77 --------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMASGI 128 (208)
Q Consensus 77 --------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~~~~ 128 (208)
....+.+.+-.++|++||.....+......|...++-. +.+..-..+...++
T Consensus 89 ~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gI 168 (237)
T d1uzma1 89 LMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIARELSKANV 168 (237)
T ss_dssp --CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----CCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred HhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCCcccHHHHHHHHHHHHHHHHHHhhhhcCCc
Confidence 01235566777999999988765444445555533211 11112223445799
Q ss_pred CEEEEeccccccCCCC--ccce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 129 PYTIIRTGVLQNTPGG--KQGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~--~~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
++..|.||++...... .... .+....+.......+|+|.++..++.+.. -.|+++.+.+|
T Consensus 169 rVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~vdGG 234 (237)
T d1uzma1 169 TANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGG 234 (237)
T ss_dssp EEEEEEECSBCCHHHHHSCHHHHHHHGGGCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred eeeeeeeCcCCChhhhccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 9999999987432110 0000 01111122344567999999999886543 24788887644
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.40 E-value=2e-12 Score=96.63 Aligned_cols=181 Identities=15% Similarity=0.061 Sum_probs=115.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh-------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM-------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~-------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
++++.||++++++|+++|++|.+.+|+.++.. +..+.++..+.+|++|++++.++++ +.|++|+++
T Consensus 12 Gas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 12 GGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAA 91 (251)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 35778999999999999999999999977532 1224568889999999998888763 579999773
Q ss_pred C----Cc--------------------------hhhhhhhcCCCeEEEeceeeecc-CCCCcccccchhH--HHhHHHHH
Q 028525 74 E----GF--------------------------ISNAGSLKGVQHVILLSQLSVYR-GSGGIQALMKGNA--RKLAEQDE 120 (208)
Q Consensus 74 ~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~-~~~~~~~~~~~~~--~~~~~~~e 120 (208)
+ +. ....+.+.+-.++|++||..... +......|...++ ..+.+..-
T Consensus 92 G~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~~~~~~~~Y~asKaal~~lt~~lA 171 (251)
T d1vl8a_ 92 GINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALA 171 (251)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccccCccccchHHHHHhHHHHHHHHH
Confidence 2 11 11235556667999998876543 2233345555332 11112122
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc-----ce-eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ-----GF-QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~-----~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..+...++++..|.||++........ .. .+....+.......+|+|++++.++.+.. -.|+++.+.+|
T Consensus 172 ~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~a~~itG~~i~vDGG 247 (251)
T d1vl8a_ 172 KEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGG 247 (251)
T ss_dssp HHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHhcccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhCCCcCcEEEeCcC
Confidence 33445799999999999854321110 00 01011112334467999999998886543 24788887644
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=2.6e-12 Score=95.50 Aligned_cols=181 Identities=13% Similarity=0.050 Sum_probs=116.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh--cCCceEEEEcCCCCHHHHHHHhcC---CCEEEEcCC----Cch-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES--FGTYVESMAGDASNKKFLKTALRG---VRSIICPSE----GFI- 77 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~~---~d~vi~~~~----~~~- 77 (208)
+.++.||++++++|+++|++|.+..|+.++..+. ...++..+.+|++|++++.++++. .|++|++++ +.+
T Consensus 12 Gas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnnAg~~~~~~~~ 91 (242)
T d1cyda_ 12 GAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAALVIMQPFL 91 (242)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCCCCCCBCGG
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEECCccccchhHH
Confidence 3577899999999999999999999998774332 124688999999999999999874 599997732 110
Q ss_pred -------------------------hhh-hhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHHHHHhcCCC
Q 028525 78 -------------------------SNA-GSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDESMLMASGIP 129 (208)
Q Consensus 78 -------------------------~~a-~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~~l~~~~~~ 129 (208)
... +++.+-.++|++||.....+......|...++ ..+.+..-..+...+++
T Consensus 92 ~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIr 171 (242)
T d1cyda_ 92 EVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIR 171 (242)
T ss_dssp GCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccCCccccccchHHHHHHHHHHHHHHhCccCee
Confidence 011 22334458999999876654444455654332 11111122234457999
Q ss_pred EEEEeccccccCCC----Cccce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 130 YTIIRTGVLQNTPG----GKQGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 130 ~tivRp~~~~~~~~----~~~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+..|.||++..+.. ..... .+....+.......+|+|.+++.++.+.. -.|+++.+.+|
T Consensus 172 vN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R~~~peeva~~v~fL~S~~s~~itG~~i~vDGG 238 (242)
T d1cyda_ 172 VNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAG 238 (242)
T ss_dssp EEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSSEEEESTT
T ss_pred cccCCCCCccCHHHHhhcCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCcCCceEEeCcc
Confidence 99999998743210 00000 01111122344567999999998886543 24788888755
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.40 E-value=1.6e-12 Score=97.54 Aligned_cols=182 Identities=13% Similarity=0.091 Sum_probs=116.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh---hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM---ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~---~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
++++.||+++++.|+++|++|.+.+|+.++.. +..+.++..+.+|++|++++.++++ ..|++|++++
T Consensus 12 Gas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilVnnAg~~~ 91 (256)
T d1k2wa_ 12 GSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDILVNNAALFD 91 (256)
T ss_dssp TCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccEEEeeccccc
Confidence 35788999999999999999999999987643 3345678999999999999988874 4699998732
Q ss_pred -Cch--------------------------hhh-hhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHHHHH
Q 028525 75 -GFI--------------------------SNA-GSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDESMLM 124 (208)
Q Consensus 75 -~~~--------------------------~~a-~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~~l~ 124 (208)
+.+ ... +++..-.+||++||.....+......|...++ ..+.+..-..+.
T Consensus 92 ~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~ 171 (256)
T d1k2wa_ 92 LAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEALVGVYCATKAAVISLTQSAGLNLI 171 (256)
T ss_dssp CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred ccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhccccccccchhhhhhHHHHHHHHHHHHhc
Confidence 110 011 22333468999999887765444455554332 111111223344
Q ss_pred hcCCCEEEEeccccccCCCCcc--------ce-------eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEee
Q 028525 125 ASGIPYTIIRTGVLQNTPGGKQ--------GF-------QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVN 187 (208)
Q Consensus 125 ~~~~~~tivRp~~~~~~~~~~~--------~~-------~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~ 187 (208)
..|+++..|.||++........ .. .+....+...+...+|+|.+++.++.+.. -.|+.+.+.+
T Consensus 172 ~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~~~p~evA~~v~fL~S~~a~~iTG~~i~vDG 251 (256)
T d1k2wa_ 172 RHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPFGRMGRAEDLTGMAIFLATPEADYIVAQTYNVDG 251 (256)
T ss_dssp GGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCHHHHHHHHHHTTSGGGTTCCSCEEEEST
T ss_pred ccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCccCceEEECc
Confidence 5799999999998743221000 00 00000112334567999999998886443 2488888876
Q ss_pred CC
Q 028525 188 GE 189 (208)
Q Consensus 188 ~~ 189 (208)
|.
T Consensus 252 G~ 253 (256)
T d1k2wa_ 252 GN 253 (256)
T ss_dssp TS
T ss_pred ch
Confidence 53
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.40 E-value=3.3e-12 Score=94.93 Aligned_cols=179 Identities=14% Similarity=0.082 Sum_probs=112.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc-CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----Cc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF-GTYVESMAGDASNKKFLKTALR-------GVRSIICPSE----GF 76 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~----~~ 76 (208)
+++.||++++++|+++|++|.+.+|+.++..+.. ..+.+.+.+|++|++++.++++ ..|++|++++ +.
T Consensus 13 as~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~ 92 (242)
T d1ulsa_ 13 AAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVHYAGITRDNF 92 (242)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCCCCCC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEEECCcccccCc
Confidence 5778999999999999999999999987754332 2367899999999999988763 4699997732 11
Q ss_pred --------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHHHHhcCC
Q 028525 77 --------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESMLMASGI 128 (208)
Q Consensus 77 --------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~l~~~~~ 128 (208)
....+.+.+-.+++++||.+.. .......|...++- .+.+..-..+...++
T Consensus 93 ~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~-~~~~~~~Y~asKaal~~ltk~lA~ela~~gI 171 (242)
T d1ulsa_ 93 HWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYL-GNLGQANYAASMAGVVGLTRTLALELGRWGI 171 (242)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGG-CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred hhhCcchhhhccccccchhhhhhhhhccccccccccceeeeecccccc-CCCCCcchHHHHHHHHHHHHHHHHHHhhhCc
Confidence 0122445566677777775433 23334455543321 111112233445799
Q ss_pred CEEEEeccccccCCCCccc--e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 129 PYTIIRTGVLQNTPGGKQG--F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 129 ~~tivRp~~~~~~~~~~~~--~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
++..|.||++......... . .+....+.......+|+|.+++.++.+.. -.|+++.+.+|
T Consensus 172 rVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG 237 (242)
T d1ulsa_ 172 RVNTLAPGFIETRMTAKVPEKVREKAIAATPLGRAGKPLEVAYAALFLLSDESSFITGQVLFVDGG 237 (242)
T ss_dssp EEEEEEECSBCCTTTSSSCHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEEEEeeCcccChhhhcCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhchhhCCCCCcEEEECCC
Confidence 9999999998543221110 0 00011122334467999999999886543 24788877644
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.39 E-value=2e-12 Score=96.32 Aligned_cols=181 Identities=13% Similarity=0.116 Sum_probs=113.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEc-Cchhhh------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVK-DKRNAM------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R-~~~~~~------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
++++.||++++++|+++|++|.+.++ +.+... +..+.++..+.+|++|++++.++++ +.|++|+++
T Consensus 8 Gas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnA 87 (244)
T d1edoa_ 8 GASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNA 87 (244)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCSEEEECC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCcccccc
Confidence 46788999999999999999988755 443321 1234568899999999999888764 469999773
Q ss_pred C----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHH
Q 028525 74 E----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDES 121 (208)
Q Consensus 74 ~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~ 121 (208)
+ +. ....+.+++-.+||++||.....+......|...++- .+.+..-.
T Consensus 88 g~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaal~~ltk~lA~ 167 (244)
T d1edoa_ 88 GITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAR 167 (244)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCCCCCHHHHHHHHHHHHChHHHHH
Confidence 2 11 1123455666799999998876544444556554321 11122223
Q ss_pred HHHhcCCCEEEEeccccccCCCC--ccce--eeecCCcCCCcccHHHHHHHHHHHhhCCC---CCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGG--KQGF--QFEEGCAANGSLSKEDAAFICVEALESIP---QTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~--~~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~---~~~~~~~i~~~ 188 (208)
.+...|+++..|.||++...... .... .+....+.......+|+|.+++.++..+. -.|+++.+.+|
T Consensus 168 el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R~~~p~dvA~~v~fLa~S~~a~~itG~~i~vdGG 241 (244)
T d1edoa_ 168 EGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRTGQPENVAGLVEFLALSPAASYITGQAFTIDGG 241 (244)
T ss_dssp HHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSCTTCSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTT
T ss_pred HHhhhCcEEEEEecceeccHHHHHhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHCCchhcCCcCCeEEeCCC
Confidence 34567999999999987422100 0000 01111122345567999999998864343 24777777643
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.39 E-value=6.5e-12 Score=94.36 Aligned_cols=181 Identities=12% Similarity=0.042 Sum_probs=114.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchh-hh------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRN-AM------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++.||++++++|+++|++|.+..|+.+. .. +..+..+..+.+|++|++++.++++ +.|++|++++
T Consensus 15 as~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnAG 94 (261)
T d1geea_ 15 SSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAG 94 (261)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEeeccce
Confidence 57889999999999999999999998643 11 1224468889999999999888774 5799997732
Q ss_pred ----Cc--------------------------hhhhhhhcCC-CeEEEeceeeeccCCCCcccccchhH--HHhHHHHHH
Q 028525 75 ----GF--------------------------ISNAGSLKGV-QHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDES 121 (208)
Q Consensus 75 ----~~--------------------------~~~a~~~~gv-~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~ 121 (208)
.. ....+.+++- .+||++||.+...+......|...++ ..+.+..-.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~ 174 (261)
T d1geea_ 95 LENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLAL 174 (261)
T ss_dssp CCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccCccccccccCCccchhhHHHHHH
Confidence 11 0122444554 35888999876654433445554332 111121223
Q ss_pred HHHhcCCCEEEEeccccccCCCCcc----ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQ----GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~----~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
.+...++++..|.||++........ .. .+....+.......+|+|.+++.++.+.. -.|+++.+.+|-
T Consensus 175 e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~ 250 (261)
T d1geea_ 175 EYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGM 250 (261)
T ss_dssp HHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HhhhhCcEEEEEeeCcCcCHhHhhhcCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCe
Confidence 3445799999999998743221100 00 01111112334567999999999886543 357888887554
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.39 E-value=6e-12 Score=94.14 Aligned_cols=180 Identities=10% Similarity=0.003 Sum_probs=114.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh---hhhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA---MESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~---~~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
++++-||+++++.|+++|++|.+.+|+.++. .+..+.+..++.+|++|++++.++++ ..|++|++++
T Consensus 13 Gas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDilVnnAG~~~ 92 (253)
T d1hxha_ 13 GGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILL 92 (253)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEEEECCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeEEecccccC
Confidence 3577899999999999999999999998763 23345678889999999988887764 4699997732
Q ss_pred -Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHHHHh
Q 028525 75 -GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESMLMA 125 (208)
Q Consensus 75 -~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~l~~ 125 (208)
+. ....+++.+ .+||++||.....+......|...++- .+.+..-..+..
T Consensus 93 ~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-G~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~ 171 (253)
T d1hxha_ 93 PGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRK 171 (253)
T ss_dssp CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-CceecccchhhhcCccccccccchhHHHHHHHHHHHHHHhh
Confidence 11 012244444 689999998876554445556554321 111111122333
Q ss_pred --cCCCEEEEeccccccCC------C-Cccceee-ecCCcC-CCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 126 --SGIPYTIIRTGVLQNTP------G-GKQGFQF-EEGCAA-NGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 126 --~~~~~tivRp~~~~~~~------~-~~~~~~~-~~~~~~-~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.++++..|.||++.... . ....... ...... ......+|+|.+++.++.+.. -.|+.+.+.+|
T Consensus 172 ~g~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG 247 (253)
T d1hxha_ 172 QGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVLFLASDESSVMSGSELHADNS 247 (253)
T ss_dssp HTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHBCBTTTBTTCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred cCCCEEEEEEeECCCcCHhHHhhCcchhhHHHHHhCccccccCCCCCHHHHHHHHHHHhChhhCCCcCcEEEECcc
Confidence 45899999999874211 1 0110100 011111 234467999999999886543 24788888654
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.38 E-value=5.3e-12 Score=94.57 Aligned_cols=181 Identities=15% Similarity=0.098 Sum_probs=114.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
++++.||++++++|+++|++|.+.+|++++..+ ..+.++..+.+|++|++++.++++ +.|++|++++
T Consensus 8 Gas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnAG 87 (255)
T d1gega_ 8 GAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAG 87 (255)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccEEEeccc
Confidence 467889999999999999999999999876322 124568889999999999888763 4799997732
Q ss_pred ----Cch--------------------------hhhhhhcC-CCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHH
Q 028525 75 ----GFI--------------------------SNAGSLKG-VQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDES 121 (208)
Q Consensus 75 ----~~~--------------------------~~a~~~~g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~ 121 (208)
+.+ ...+.+.+ -.++|++||.....+......|...++- .+.+..-.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~ltk~lA~ 167 (255)
T d1gega_ 88 VAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAAR 167 (255)
T ss_dssp CCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccCcccccchhCHHHHHhhHHHHHH
Confidence 110 11123343 4578999998876544444556553321 11121223
Q ss_pred HHHhcCCCEEEEeccccccCCCC------------ccce---eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEE
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGG------------KQGF---QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFE 184 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~------------~~~~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~ 184 (208)
.+...|+++..|.||++..+... .... .+....+.......+|+|.+++.++.+.. -.|+.+.
T Consensus 168 el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~peevA~~v~fL~S~~a~~itG~~i~ 247 (255)
T d1gega_ 168 DLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVAACVSYLASPDSDYMTGQSLL 247 (255)
T ss_dssp HHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEE
T ss_pred HhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCccCcEEE
Confidence 34457999999999987421100 0000 00111122334567999999999886443 2478888
Q ss_pred EeeC
Q 028525 185 VVNG 188 (208)
Q Consensus 185 i~~~ 188 (208)
+.+|
T Consensus 248 vDGG 251 (255)
T d1gega_ 248 IDGG 251 (255)
T ss_dssp ESSS
T ss_pred ecCC
Confidence 7754
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.38 E-value=5.6e-12 Score=93.57 Aligned_cols=165 Identities=11% Similarity=0.069 Sum_probs=110.1
Q ss_pred cccCccHHHHHHHHHhCCCc-------EEEEEcCchhhhh----h--cCCceEEEEcCCCCHHHHHHHhc-------CCC
Q 028525 8 KRKKMNFRMVILSLIVKRTR-------IKALVKDKRNAME----S--FGTYVESMAGDASNKKFLKTALR-------GVR 67 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~-------V~~~~R~~~~~~~----~--~~~~v~~v~~Dl~d~~~l~~~~~-------~~d 67 (208)
+.++-||++++++|+++|++ |....|+.+++.+ . .+..+..+.+|++|++++.++++ ..|
T Consensus 8 Gas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iD 87 (240)
T d2bd0a1 8 GAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVERYGHID 87 (240)
T ss_dssp TTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHHTSCCS
T ss_pred cCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCcc
Confidence 45788999999999999987 8888998776322 1 23467889999999998887763 469
Q ss_pred EEEEcCC----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhH--HHh
Q 028525 68 SIICPSE----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKL 115 (208)
Q Consensus 68 ~vi~~~~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~ 115 (208)
++|++++ +. ....+++.+-.++|++||.....+......|..++. ..+
T Consensus 88 ilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asK~al~~l 167 (240)
T d2bd0a1 88 CLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGL 167 (240)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHH
T ss_pred eeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCCCCChHHHHHHHHHHHH
Confidence 9997732 11 112355666679999999987765444455655332 112
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 116 AEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 116 ~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
.+.....+...+++++.|.||++..... .. . . ..........+|+|++++.++.++.
T Consensus 168 t~~la~el~~~gIrvn~i~PG~v~T~~~-~~-~--~-~~~~~~~~~PedvA~~v~~l~s~~~ 224 (240)
T d2bd0a1 168 VETMRLYARKCNVRITDVQPGAVYTPMW-GK-V--D-DEMQALMMMPEDIAAPVVQAYLQPS 224 (240)
T ss_dssp HHHHHHHHTTTTEEEEEEEECCBCSTTT-CC-C--C-STTGGGSBCHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHhCcCCeEEEEeeeCcccCchh-hh-c--C-HhhHhcCCCHHHHHHHHHHHHcCCc
Confidence 2222233556799999999998843221 11 1 0 1111233567999999999998765
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.37 E-value=5.5e-12 Score=94.64 Aligned_cols=181 Identities=13% Similarity=0.049 Sum_probs=105.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------C-CCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------G-VRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~-~d~vi~~~ 73 (208)
++++.||++++++|+++|++|.+.+|+.+++.+ ....++..+.+|++|++++.++++ + .|++|+++
T Consensus 15 Gas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~idilvnnA 94 (259)
T d1xq1a_ 15 GGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNL 94 (259)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCCCcccccccc
Confidence 357889999999999999999999999876322 123468899999999988877652 3 69999763
Q ss_pred CCc------------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHH
Q 028525 74 EGF------------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDES 121 (208)
Q Consensus 74 ~~~------------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~ 121 (208)
+.. ....+++.+-.++|++||............|...++-. +.+..-.
T Consensus 95 G~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~ 174 (259)
T d1xq1a_ 95 GAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLAC 174 (259)
T ss_dssp CC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------CCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccccccccccccccccchhhhhHHHHH
Confidence 210 01234556667999999988665444444565533211 1111223
Q ss_pred HHHhcCCCEEEEeccccccCCCCcc---ce-e-eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQ---GF-Q-FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~---~~-~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+...++++..|.||++........ .. . +....+.......+|||.+++.++.+.. -.|+.+.+.+|
T Consensus 175 e~~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~iTG~~i~vDGG 248 (259)
T d1xq1a_ 175 EWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGG 248 (259)
T ss_dssp HHGGGTCEEEEEECCSCC-------------------------CCGGGGHHHHHHHTSGGGTTCCSCEEECCCC
T ss_pred HhcccCeEEEEeccCcccCHHhhhhchHHHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCCcCcEEEeCCC
Confidence 3445799999999998743221110 00 0 0000111223356999999998886443 24777777644
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.36 E-value=2.3e-11 Score=91.20 Aligned_cols=170 Identities=14% Similarity=0.126 Sum_probs=108.6
Q ss_pred cccCccHHHHHHHHHhCCCc-EEEEEcCchh---h----h--hhcCCceEEEEcCCCCHHHHHHHhcC------CCEEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTR-IKALVKDKRN---A----M--ESFGTYVESMAGDASNKKFLKTALRG------VRSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~-V~~~~R~~~~---~----~--~~~~~~v~~v~~Dl~d~~~l~~~~~~------~d~vi~ 71 (208)
+++|.||++++++|+++|++ |+++.|+..+ . . +..+..+.++.+|++|++++.++++. .|.||+
T Consensus 16 Ggs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~~~i~~vv~ 95 (259)
T d2fr1a1 16 GGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDVPLSAVFH 95 (259)
T ss_dssp TTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTSCEEEEEE
T ss_pred CCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccccccccccccc
Confidence 46889999999999999985 7777886432 1 1 11245689999999999999988754 477887
Q ss_pred cCC----Cc----------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHh
Q 028525 72 PSE----GF----------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMA 125 (208)
Q Consensus 72 ~~~----~~----------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~ 125 (208)
+.+ +. +..++...+..+||++||.....+......|...+ ...+..-+.++.
T Consensus 96 ~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~g~~~~~~YaAak--a~l~~la~~~~~ 173 (259)
T d2fr1a1 96 AAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAPGLGGYAPGN--AYLDGLAQQRRS 173 (259)
T ss_dssp CCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCTTCTTTHHHH--HHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhccCCcccHHHHHHH--HhHHHHHHHHHh
Confidence 732 11 11234445677999999987765444455565533 332222245667
Q ss_pred cCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCCCC
Q 028525 126 SGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQT 179 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~~ 179 (208)
.|++++.|.||.+.+..-......-.....+...++.+++++++..++..+...
T Consensus 174 ~Gi~v~~I~pg~~~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~l~~~l~~~~~~ 227 (259)
T d2fr1a1 174 DGLPATAVAWGTWAGSGMAEGPVADRFRRHGVIEMPPETACRALQNALDRAEVC 227 (259)
T ss_dssp TTCCCEEEEECCBC------------CTTTTEECBCHHHHHHHHHHHHHTTCSS
T ss_pred CCCCEEECCCCcccCCccccchHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCce
Confidence 899999999998754211111110000112234578899999999999876543
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.35 E-value=1.5e-11 Score=92.73 Aligned_cols=182 Identities=8% Similarity=-0.016 Sum_probs=114.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----hc-CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC-
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----SF-GTYVESMAGDASNKKFLKTALR-------GVRSIICPSE- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~~-~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~- 74 (208)
++++-||++++++|+++|++|++.+|+.++..+ .. ...+.++.+|++|++++.++++ ..|++|++++
T Consensus 13 Gas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lVnnAG~ 92 (268)
T d2bgka1 13 GGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGV 92 (268)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCcceecccccc
Confidence 357789999999999999999999999876322 11 2357889999999999988874 5799997622
Q ss_pred ---C--c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCc-ccccchhH--HHhHHHHH
Q 028525 75 ---G--F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGI-QALMKGNA--RKLAEQDE 120 (208)
Q Consensus 75 ---~--~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~-~~~~~~~~--~~~~~~~e 120 (208)
. . ....+.+++-.++|++||........+. ..|...++ ..+.+..-
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~~~~~~Y~asKaal~~lt~~lA 172 (268)
T d2bgka1 93 LSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLC 172 (268)
T ss_dssp CCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccccccccccccchhHHHHHhCHHHHH
Confidence 1 1 0122455666789999988765433222 24443221 11111112
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcc----cee----eecC-CcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeCC
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQ----GFQ----FEEG-CAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~----~~~----~~~~-~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
..+...++++..|.||.+........ ... .... .........+|||.+++.++.+.. -.|+++.+.+|-
T Consensus 173 ~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~pedvA~~v~fL~S~~s~~itGq~i~VDGG~ 252 (268)
T d2bgka1 173 TELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGY 252 (268)
T ss_dssp HHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSCSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccccCCCCcCHHHHHHHHHHHhChhhCCccCceEEECcCc
Confidence 23445799999999998754321110 000 0001 111334567999999999886543 247888887554
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=4.3e-12 Score=94.76 Aligned_cols=180 Identities=11% Similarity=-0.031 Sum_probs=114.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh--cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES--FGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE---- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~---- 74 (208)
++++.||+++++.|+++|++|.+.+|+.++..+. ...++..+.+|++|++++.++++ +.|++|++++
T Consensus 13 Gas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilVnnAG~~~~ 92 (250)
T d1ydea1 13 GGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPP 92 (250)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEEEeccccccc
Confidence 4578899999999999999999999998764332 23468899999999999888764 4699997732
Q ss_pred -Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 75 -GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 75 -~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
..+ ...+++.+ .++|++||.....+......|...++-. +.+..-..+..
T Consensus 93 ~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~e~a~ 171 (250)
T d1ydea1 93 PQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ-GNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESP 171 (250)
T ss_dssp CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC-CCCcccccccccccccCcchhHHHHhhHHHHHHHHHHHhcc
Confidence 110 11244443 5899999988765444445565533211 11111223445
Q ss_pred cCCCEEEEeccccccCCC-------Cc-c-cee-eecCCcCCCcccHHHHHHHHHHHhhCCCC-CCcEEEEeeC
Q 028525 126 SGIPYTIIRTGVLQNTPG-------GK-Q-GFQ-FEEGCAANGSLSKEDAAFICVEALESIPQ-TGLIFEVVNG 188 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~-------~~-~-~~~-~~~~~~~~~~v~~~Dva~~~~~~l~~~~~-~~~~~~i~~~ 188 (208)
.++++..|.||++..... .. . .+. .....+...+...+|+|.+++.++.+... .|+++.+.+|
T Consensus 172 ~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~g~p~eva~~v~fL~Sda~~itG~~i~vDGG 245 (250)
T d1ydea1 172 YGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRMGQPAEVGAAAVFLASEANFCTGIELLVTGG 245 (250)
T ss_dssp GTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred cCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCccCCCcCCeEEECCC
Confidence 799999999998742110 00 0 000 00011223455779999999988864332 4777777644
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.35 E-value=1.8e-11 Score=91.75 Aligned_cols=180 Identities=12% Similarity=0.061 Sum_probs=113.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------C-CCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------G-VRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~-~d~vi~~~ 73 (208)
+.++-||++++++|+++|++|.+.+|+++++.+ ..+..+.++.+|++|.+++.++++ + .|++|+++
T Consensus 13 Gas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g~idilinna 92 (258)
T d1ae1a_ 13 GGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNA 92 (258)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSCCCEEEECC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCCCcEEEeccc
Confidence 458899999999999999999999999865321 123467888999999998877652 3 58888763
Q ss_pred CC----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHH
Q 028525 74 EG----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDES 121 (208)
Q Consensus 74 ~~----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~ 121 (208)
+. . ....+.+.+..++|++||.....+......|...++ ..+.+..-.
T Consensus 93 g~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~al~~lt~~lA~ 172 (258)
T d1ae1a_ 93 GVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLAC 172 (258)
T ss_dssp CCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccccCCHHHHhhhhhhccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 21 1 012245567779999999987654444444544321 111111122
Q ss_pred HHHhcCCCEEEEeccccccCCCCcccee-----------eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGKQGFQ-----------FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~~~~~-----------~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+...++++..|.||++....... ... +....+...+...+|+|.+++.++.+.. -.|+.+.+.+|
T Consensus 173 el~~~gIrvN~I~PG~i~T~~~~~-~~~~~~~~~~~~~~~~~~~plgR~~~pediA~~v~fL~S~~s~~itG~~i~vDGG 251 (258)
T d1ae1a_ 173 EWAKDNIRVNSVAPGVILTPLVET-AIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFPAASYITGQIIWADGG 251 (258)
T ss_dssp HHGGGTEEEEEEEECSBC--------------CHHHHHHHHHHSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hcCcCcEEEEEEeeCcccCcchhh-hhhhhhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhCCCcCcEEEeCCC
Confidence 334578999999999985422111 000 0001122335678999999999886443 35777777643
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=1.8e-11 Score=90.48 Aligned_cols=178 Identities=14% Similarity=0.082 Sum_probs=114.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCC-HHHHHHHhcCCCEEEEcCCC----c------
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASN-KKFLKTALRGVRSIICPSEG----F------ 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d-~~~l~~~~~~~d~vi~~~~~----~------ 76 (208)
+.++.||++++++|+++|++|.+.+|+.+...+. +.+++.+|+++ .+.+.+.+...|++|++++. .
T Consensus 11 Gas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~---~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~ 87 (234)
T d1o5ia_ 11 AASRGIGRAVADVLSQEGAEVTICARNEELLKRS---GHRYVVCDLRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTN 87 (234)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT---CSEEEECCTTTCHHHHHHHSCCCSEEEECCCCCCCBCGGGCCH
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhc---CCcEEEcchHHHHHHHHHHhCCCcEEEecccccCCcchhhhhh
Confidence 3577899999999999999999999998776542 35778899986 45666667789999977321 1
Q ss_pred --------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHHHHHhcCCCEEEEe
Q 028525 77 --------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDESMLMASGIPYTIIR 134 (208)
Q Consensus 77 --------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~~l~~~~~~~tivR 134 (208)
....+++.+-.++|++||.....+......|...++ ..+.+..-..+...++++..|.
T Consensus 88 ~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~ 167 (234)
T d1o5ia_ 88 EDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVA 167 (234)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred HHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccCeEEeecc
Confidence 012345566678999998876654444445544321 1111212233445799999999
Q ss_pred ccccccCCCCc----cce-eeecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 135 TGVLQNTPGGK----QGF-QFEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 135 p~~~~~~~~~~----~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
||++....... ... .+....+.......+|+|.+++.++.+... .|+++.+.+|
T Consensus 168 PG~v~T~~~~~~~~~~~~~~~~~~~pl~R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG 228 (234)
T d1o5ia_ 168 PGWTETERVKELLSEEKKKQVESQIPMRRMAKPEEIASVVAFLCSEKASYLTGQTIVVDGG 228 (234)
T ss_dssp ECSBCCTTHHHHSCHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCccchhhhhhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhcCCcCcEEEECcc
Confidence 99875332111 000 011112223455779999999988865432 4788888754
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.34 E-value=9.9e-12 Score=93.18 Aligned_cols=182 Identities=10% Similarity=0.053 Sum_probs=116.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh-------h-cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME-------S-FGTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~-------~-~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
++++-||+++++.|+++|++|.+..|+.++..+ . .+.++..+.+|++|++++.++++ +.|++|++
T Consensus 11 Gas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnn 90 (258)
T d1iy8a_ 11 GGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNN 90 (258)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 457789999999999999999999999866321 1 12367889999999999887763 57999976
Q ss_pred CC-----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHH
Q 028525 73 SE-----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQD 119 (208)
Q Consensus 73 ~~-----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~ 119 (208)
++ +.+ ...+++.+-.+||++||.....+......|...++- .+.+..
T Consensus 91 AG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~l 170 (258)
T d1iy8a_ 91 AGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNS 170 (258)
T ss_dssp CCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCSSBHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccCCCCchHHHHHHHHHHHHHHHH
Confidence 22 110 122445666799999998876544445556554321 111112
Q ss_pred HHHHHhcCCCEEEEeccccccCCC---------Cc-cce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEE
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPG---------GK-QGF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEV 185 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~---------~~-~~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i 185 (208)
-..+...++++..|.||++..+.. .. ... .+....+...+...+|+|.+++.++.+.. -.|+++.+
T Consensus 171 A~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~p~dvA~~v~fL~S~~s~~itG~~i~V 250 (258)
T d1iy8a_ 171 AVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFLLSDDASYVNATVVPI 250 (258)
T ss_dssp HHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEE
T ss_pred HHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCceEEc
Confidence 223445799999999998743210 00 000 01111122334567999999999886543 24788888
Q ss_pred eeCC
Q 028525 186 VNGE 189 (208)
Q Consensus 186 ~~~~ 189 (208)
.+|-
T Consensus 251 DGG~ 254 (258)
T d1iy8a_ 251 DGGQ 254 (258)
T ss_dssp STTT
T ss_pred Ccch
Confidence 7554
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.34 E-value=3.4e-12 Score=95.89 Aligned_cols=181 Identities=12% Similarity=0.042 Sum_probs=115.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
++++.||+++++.|+++|++|.+.+|+.++..+ ..+.++..+.+|++|++++.++++ ..|++|++++
T Consensus 12 Gas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnaG 91 (260)
T d1zema1 12 GAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAG 91 (260)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCeehhhhc
Confidence 357789999999999999999999999765321 123468899999999988887763 4699997622
Q ss_pred -----Cch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHH
Q 028525 75 -----GFI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDES 121 (208)
Q Consensus 75 -----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~ 121 (208)
+.+ ...+.+.+-.++|++||.....+......|...++- .+.+..-.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKaal~~ltk~lA~ 171 (260)
T d1zema1 92 YQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAAL 171 (260)
T ss_dssp CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCTTBHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 111 112445566799999998876654445556553321 11121223
Q ss_pred HHHhcCCCEEEEeccccccCCC------------Cccce--------eeecCCcCCCcccHHHHHHHHHHHhhCCC--CC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPG------------GKQGF--------QFEEGCAANGSLSKEDAAFICVEALESIP--QT 179 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~------------~~~~~--------~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~ 179 (208)
.+...|+++..|.||.+..... ..... .+....+...+...+|+|.+++.++.+.. -.
T Consensus 172 el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pedvA~~v~fL~S~~s~~it 251 (260)
T d1zema1 172 DLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMT 251 (260)
T ss_dssp HHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTSTTSSCBCGGGSHHHHHHHHSGGGTTCC
T ss_pred HhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCcc
Confidence 3445799999999999853210 00000 00001112233456999999999886543 24
Q ss_pred CcEEEEeeC
Q 028525 180 GLIFEVVNG 188 (208)
Q Consensus 180 ~~~~~i~~~ 188 (208)
|+++.+.+|
T Consensus 252 G~~i~VDGG 260 (260)
T d1zema1 252 GVNLPIAGG 260 (260)
T ss_dssp SCEEEESCC
T ss_pred CCeEEeCCC
Confidence 777777643
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.31 E-value=6.2e-12 Score=94.30 Aligned_cols=181 Identities=9% Similarity=0.044 Sum_probs=114.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
++++-||++++++|+++|++|.+.+|++++..+ ..+.++..+.+|++|++++.++++ ..|++|++++
T Consensus 9 Gas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilVnnAG 88 (257)
T d2rhca1 9 GATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAG 88 (257)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCCEEEeccc
Confidence 457789999999999999999999999766322 224468899999999999888764 4699997732
Q ss_pred ----Cch----------------------hh-h-----hhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHH
Q 028525 75 ----GFI----------------------SN-A-----GSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDE 120 (208)
Q Consensus 75 ----~~~----------------------~~-a-----~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e 120 (208)
+.+ .+ + +.+.+..++|++||.....+......|...++- .+.+..-
T Consensus 89 ~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~~~~~Y~asKaal~~ltk~lA 168 (257)
T d2rhca1 89 RPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALG 168 (257)
T ss_dssp CCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 110 01 1 234455689999998776554445556554321 1111111
Q ss_pred HHHHhcCCCEEEEeccccccCCC------------Cccc-e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEE
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPG------------GKQG-F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIF 183 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~------------~~~~-~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~ 183 (208)
..+...++++..|.||++..+.. .... . .+....+...+...+|+|.+++.++.+.. -.|+.+
T Consensus 169 ~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~PlgR~~~pedia~~v~fL~S~~s~~itG~~i 248 (257)
T d2rhca1 169 LELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLIGPGAAAVTAQAL 248 (257)
T ss_dssp HHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred HHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCceE
Confidence 22334689999999998742110 0000 0 00111122334567999999999886443 247888
Q ss_pred EEeeC
Q 028525 184 EVVNG 188 (208)
Q Consensus 184 ~i~~~ 188 (208)
.+.+|
T Consensus 249 ~vDGG 253 (257)
T d2rhca1 249 NVCGG 253 (257)
T ss_dssp EESTT
T ss_pred EECcC
Confidence 87644
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.31 E-value=5.8e-12 Score=94.53 Aligned_cols=181 Identities=12% Similarity=0.026 Sum_probs=114.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc--------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR--------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~--------~~d~vi~~~ 73 (208)
++++-||++++++|+++|++|.+.+|+.++..+ ..+.++..+.+|++|++++.++++ ..|++|+++
T Consensus 15 Gas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~~idilvnnA 94 (259)
T d2ae2a_ 15 GGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNA 94 (259)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTCCCEEEECC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCCCceEEEECC
Confidence 357789999999999999999999999776322 123467889999999988877652 369999773
Q ss_pred CC----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHH
Q 028525 74 EG----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDES 121 (208)
Q Consensus 74 ~~----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~ 121 (208)
+. . ....+.+.+-.++|++||.....+......|...++- .+.+..-.
T Consensus 95 G~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~ 174 (259)
T d2ae2a_ 95 GIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAF 174 (259)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 21 1 0112445566699999998776544444455543321 11111112
Q ss_pred HHHhcCCCEEEEeccccccCCC----Cc----cce-eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPG----GK----QGF-QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~----~~----~~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+...++++..|.||++..... .. ... .+....+.......+|+|.+++.++.+.. -.|+++.+.+|
T Consensus 175 el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG 252 (259)
T d2ae2a_ 175 EWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGG 252 (259)
T ss_dssp HTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECCC
Confidence 2335789999999998743210 00 000 00011122334567999999998886543 24788887754
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=5.1e-12 Score=94.58 Aligned_cols=182 Identities=13% Similarity=0.060 Sum_probs=115.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----h----cCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----S----FGTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~----~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
++++.||+++++.|+++|++|.+.+|+.++..+ + .+.++..+.+|++|++++.++++ +.|++|++
T Consensus 10 Gas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnn 89 (254)
T d2gdza1 10 GAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNN 89 (254)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcCCcCeeccc
Confidence 457789999999999999999999999765221 1 12368889999999998888763 57999977
Q ss_pred CCCc----------------------hhhhhhhc--C-CCeEEEeceeeeccCCCCcccccchhHH--HhHH--HHHHHH
Q 028525 73 SEGF----------------------ISNAGSLK--G-VQHVILLSQLSVYRGSGGIQALMKGNAR--KLAE--QDESML 123 (208)
Q Consensus 73 ~~~~----------------------~~~a~~~~--g-v~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~--~~e~~l 123 (208)
++.. ....+.+. + -.+||++||.....+......|...++- .+.+ .....+
T Consensus 90 Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~ltrs~ala~e~ 169 (254)
T d2gdza1 90 AGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANL 169 (254)
T ss_dssp CCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCCCCccchHHHHHHHHHHHHHHHHHHHh
Confidence 3211 01223232 2 2479999999876554444556554321 1111 112345
Q ss_pred HhcCCCEEEEeccccccCCCCc--cceeeec----------CCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGK--QGFQFEE----------GCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGE 189 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~--~~~~~~~----------~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~ 189 (208)
...++++..|.||.+....... ....... ..+.......+|+|++++.++.++.-.|+++.+.+|.
T Consensus 170 ~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~itG~~i~VdGG~ 247 (254)
T d2gdza1 170 MNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSK 247 (254)
T ss_dssp HTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHHHHCCBCHHHHHHHHHHHHHCTTCSSCEEEEETTT
T ss_pred cCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHcCCCCCCCEEEECCCC
Confidence 5678999999999874211000 0000000 0011223456999999999998765568888887654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.2e-11 Score=91.99 Aligned_cols=164 Identities=11% Similarity=0.059 Sum_probs=107.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
++++.||++++++|+++|++|.+.+|+.++..+ ..+.++..+.+|++|++++.++++ .+|++|++++
T Consensus 14 Gas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~idilinnag 93 (244)
T d1yb1a_ 14 GAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAG 93 (244)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCCSEEEECCC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCceeEeecc
Confidence 568889999999999999999999999876322 234578899999999999888763 4799997732
Q ss_pred C----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHH
Q 028525 75 G----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESM 122 (208)
Q Consensus 75 ~----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~ 122 (208)
. . ....+.+.+-.+||++||.....+......|...++-. +.+.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~~~~~La~E 173 (244)
T d1yb1a_ 94 VVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDE 173 (244)
T ss_dssp CCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 11235567777999999998765433333454433211 11111112
Q ss_pred HHh---cCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 123 LMA---SGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 123 l~~---~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
+.. .|++++.|.||++..+...... .........+|+|+.++..+..+.
T Consensus 174 l~~~~~~gI~V~~i~PG~v~T~~~~~~~------~~~~~~~~pe~va~~i~~~~~~~~ 225 (244)
T d1yb1a_ 174 LAALQITGVKTTCLCPNFVNTGFIKNPS------TSLGPTLEPEEVVNRLMHGILTEQ 225 (244)
T ss_dssp HHHTTCTTEEEEEEEETHHHHCSTTCTH------HHHCCCCCHHHHHHHHHHHHHTTC
T ss_pred HHhhcCCCEEEEEEEcCCCCChhhhCcC------ccccCCCCHHHHHHHHHHHHhcCC
Confidence 222 4799999999987443222110 011234567999999998876654
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2.7e-11 Score=90.07 Aligned_cols=188 Identities=13% Similarity=0.098 Sum_probs=117.9
Q ss_pred Cchhhhc-----cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc-CCceEEEEcCCCCHHHHHHHhc---CCCEEEE
Q 028525 1 MGPMKKM-----KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF-GTYVESMAGDASNKKFLKTALR---GVRSIIC 71 (208)
Q Consensus 1 ~~~~~~~-----~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~v~~v~~Dl~d~~~l~~~~~---~~d~vi~ 71 (208)
||.++++ ++++.||+++++.|+++|++|++.+|+++++.+.. ..+++....|+.+.+.+....+ +.|++|+
T Consensus 1 m~~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn 80 (245)
T d2ag5a1 1 MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFN 80 (245)
T ss_dssp CCTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEE
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeeccccccccccccccccceeEEe
Confidence 7777554 46899999999999999999999999988765433 3468889999998777776664 5799997
Q ss_pred cCC----Cch--------------------------hhhhhhcCCCeEEEeceeeec-cCCCCcccccchhH--HHhHHH
Q 028525 72 PSE----GFI--------------------------SNAGSLKGVQHVILLSQLSVY-RGSGGIQALMKGNA--RKLAEQ 118 (208)
Q Consensus 72 ~~~----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~-~~~~~~~~~~~~~~--~~~~~~ 118 (208)
+.+ +.+ ...+.+.+-.++|++||.... .+......|...++ ..+.+.
T Consensus 81 ~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~~~~Y~~sKaal~~l~r~ 160 (245)
T d2ag5a1 81 VAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKS 160 (245)
T ss_dssp CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCTTBHHHHHHHHHHHHHHHH
T ss_pred cccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhccCCccchhHHHHHHHHHHHHHHH
Confidence 722 110 112445566689999886543 22233334444332 111111
Q ss_pred HHHHHHhcCCCEEEEeccccccCCCC------ccc--e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEe
Q 028525 119 DESMLMASGIPYTIIRTGVLQNTPGG------KQG--F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVV 186 (208)
Q Consensus 119 ~e~~l~~~~~~~tivRp~~~~~~~~~------~~~--~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~ 186 (208)
.-..+...|+++..|.||.+...... ... . .+....+...+...+|+|.++..++.++. -.|+.+.+.
T Consensus 161 lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~pedva~~v~fL~s~~s~~iTG~~i~VD 240 (245)
T d2ag5a1 161 VAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAEEIAMLCVYLASDESAYVTGNPVIID 240 (245)
T ss_dssp HHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTSSCEEHHHHHHHHHHHHSGGGTTCCSCEEEEC
T ss_pred HHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhCCCcCceEEeC
Confidence 22334457999999999987432100 000 0 00011122345567999999999887543 247777776
Q ss_pred eC
Q 028525 187 NG 188 (208)
Q Consensus 187 ~~ 188 (208)
+|
T Consensus 241 GG 242 (245)
T d2ag5a1 241 GG 242 (245)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.27 E-value=3.7e-11 Score=90.30 Aligned_cols=180 Identities=13% Similarity=0.079 Sum_probs=107.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh------c---CCceEEEEcCCCCHHHHHHHhc-------CCCEEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES------F---GTYVESMAGDASNKKFLKTALR-------GVRSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~------~---~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~ 71 (208)
++++.||++++++|+++|++|.+.+|+.++..+. . ..++..+.+|++|++++.++++ +.|++|+
T Consensus 12 Gas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilvn 91 (264)
T d1spxa_ 12 GSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVN 91 (264)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEeec
Confidence 4588899999999999999999999998763221 1 1358899999999998888774 5799997
Q ss_pred cCCC----c------------------------------hhhhhhhcCCCeEEEeceee-eccCCCCcccccchhH--HH
Q 028525 72 PSEG----F------------------------------ISNAGSLKGVQHVILLSQLS-VYRGSGGIQALMKGNA--RK 114 (208)
Q Consensus 72 ~~~~----~------------------------------~~~a~~~~gv~~~v~~Ss~~-~~~~~~~~~~~~~~~~--~~ 114 (208)
+++. . ....+++.+ .++|.++|.. ...+......|...++ ..
T Consensus 92 nAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g~iI~~~S~~~~~~~~~~~~~Y~asKaal~~ 170 (264)
T d1spxa_ 92 NAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHATPDFPYYSIAKAAIDQ 170 (264)
T ss_dssp CCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCCTTSHHHHHHHHHHHH
T ss_pred ccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccccc-CcceeeeeeccccccCCCchhhhhhhhhHHH
Confidence 7321 0 011233343 3555555543 3333333344544332 11
Q ss_pred hHHHHHHHHHhcCCCEEEEeccccccCCCCcccee--e-----------ecCCcCCCcccHHHHHHHHHHHhhCC--C-C
Q 028525 115 LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQ--F-----------EEGCAANGSLSKEDAAFICVEALESI--P-Q 178 (208)
Q Consensus 115 ~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~--~-----------~~~~~~~~~v~~~Dva~~~~~~l~~~--~-~ 178 (208)
+.+..-..+...|+++..|.||++........... . ....+...+...+|+|++++.++.++ . -
T Consensus 171 lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pedvA~~v~fL~S~~~s~~i 250 (264)
T d1spxa_ 171 YTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFLADRKTSSYI 250 (264)
T ss_dssp HHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTTSSCBCHHHHHHHHHHHHCHHHHTTC
T ss_pred HHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCc
Confidence 11112233445799999999999853321110000 0 00011123446799999999988644 2 3
Q ss_pred CCcEEEEeeC
Q 028525 179 TGLIFEVVNG 188 (208)
Q Consensus 179 ~~~~~~i~~~ 188 (208)
.|+.+.+.+|
T Consensus 251 tG~~i~vDGG 260 (264)
T d1spxa_ 251 IGHQLVVDGG 260 (264)
T ss_dssp CSCEEEESTT
T ss_pred cCceEEeCCC
Confidence 5788887644
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=3.5e-11 Score=91.93 Aligned_cols=180 Identities=12% Similarity=0.047 Sum_probs=108.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----h-------cCCceEEEEcCCCCHHHHHHHhc-------CCCEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----S-------FGTYVESMAGDASNKKFLKTALR-------GVRSI 69 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~-------~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~v 69 (208)
++++.||++++++|+++|++|++..|+.++..+ + .+.++..+.+|++|++++.++++ +.|++
T Consensus 19 Gas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDiL 98 (297)
T d1yxma1 19 GGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFL 98 (297)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHHHHhCCeEEE
Confidence 357789999999999999999999999765321 1 13368889999999999888763 57999
Q ss_pred EEcCCC----ch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHH
Q 028525 70 ICPSEG----FI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAE 117 (208)
Q Consensus 70 i~~~~~----~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~ 117 (208)
|++++. .+ ...+.+.+-.++|.+|+.+.. .......|...++ ..+.+
T Consensus 99 VnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~-~~~~~~~Y~asKaal~~ltk 177 (297)
T d1yxma1 99 VNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA-GFPLAVHSGAARAGVYNLTK 177 (297)
T ss_dssp EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT-CCTTCHHHHHHHHHHHHHHH
T ss_pred EeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccccc-cccccccchhHHHHHHHHHH
Confidence 977321 10 112344555678777654322 2222233433221 11111
Q ss_pred HHHHHHHhcCCCEEEEeccccccCCCCcc----ceeeec----CCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEee
Q 028525 118 QDESMLMASGIPYTIIRTGVLQNTPGGKQ----GFQFEE----GCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVN 187 (208)
Q Consensus 118 ~~e~~l~~~~~~~tivRp~~~~~~~~~~~----~~~~~~----~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~ 187 (208)
..-..+...++++..|.||++........ ...+.. ..+.......+|||.+++.++.+.. -.|+++.+.+
T Consensus 178 ~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~plgR~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDG 257 (297)
T d1yxma1 178 SLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDG 257 (297)
T ss_dssp HHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred HHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCcCCcEEEeCc
Confidence 11122334789999999999853321110 000000 0111223456999999999986543 2578888765
Q ss_pred C
Q 028525 188 G 188 (208)
Q Consensus 188 ~ 188 (208)
|
T Consensus 258 G 258 (297)
T d1yxma1 258 G 258 (297)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.26 E-value=9.7e-12 Score=92.93 Aligned_cols=180 Identities=12% Similarity=0.031 Sum_probs=109.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHh-------cCCCEEEEcCC-----C
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTAL-------RGVRSIICPSE-----G 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~-------~~~d~vi~~~~-----~ 75 (208)
+.++.||++++++|+++|++|.+..|+.++..+..........+|+.|.+++.+++ .+.|++|++++ +
T Consensus 7 Gas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiLVnNAg~~~~~~ 86 (252)
T d1zmta1 7 NVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQ 86 (252)
T ss_dssp STTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECCCCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECCcCCCCCC
Confidence 45788999999999999999999999876643322112233456666655544443 36799996521 1
Q ss_pred ch--------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHHHHHhcC
Q 028525 76 FI--------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDESMLMASG 127 (208)
Q Consensus 76 ~~--------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~~l~~~~ 127 (208)
.+ ...+++.+-.+||++||.....+......|...++ ..+.+..-..+...+
T Consensus 87 ~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA~ela~~g 166 (252)
T d1zmta1 87 PIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYN 166 (252)
T ss_dssp CGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred ChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeecccccccccccccccccccccccHHHHHHHHHHHhcccC
Confidence 10 12245566679999999887654444445655332 111121223344679
Q ss_pred CCEEEEeccccccCCCCcccee-------------eecCCcCCCcccHHHHHHHHHHHhhCCCC--CCcEEEEeeC
Q 028525 128 IPYTIIRTGVLQNTPGGKQGFQ-------------FEEGCAANGSLSKEDAAFICVEALESIPQ--TGLIFEVVNG 188 (208)
Q Consensus 128 ~~~tivRp~~~~~~~~~~~~~~-------------~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~~~~i~~~ 188 (208)
+++..|.||++........ .. +....+...+...+|+|.+++.++.+... .|+++.+.+|
T Consensus 167 IrVN~I~PG~i~T~~~~~~-~~~~~~~~~~e~~~~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~iTG~~i~vdGG 241 (252)
T d1zmta1 167 IPVFAIGPNYLHSEDSPYF-YPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGG 241 (252)
T ss_dssp CCEEEEEESSBCCBTCCSS-CBHHHHTTCHHHHHHHHHHSSSSSCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTT
T ss_pred cEEEEEecCCCcCcchhhh-hhcccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 9999999999854322110 00 00001112344679999999999875542 4888888755
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.25 E-value=9.4e-11 Score=89.37 Aligned_cols=180 Identities=11% Similarity=0.090 Sum_probs=110.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhh-------hhcCCceEEEEcCCCCHHHHHHHh-------cCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAM-------ESFGTYVESMAGDASNKKFLKTAL-------RGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~-------~~~~~~v~~v~~Dl~d~~~l~~~~-------~~~d~vi~~~~ 74 (208)
++|.||++++++|+++|++|++.+|+.++.. ...+..+..+.+|++|.+++.+++ .++|++|++++
T Consensus 33 as~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iDilvnnAg 112 (294)
T d1w6ua_ 33 GGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAA 112 (294)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred CCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhccccchhhhhhh
Confidence 5889999999999999999999999976522 122456889999999999887765 35799997732
Q ss_pred Cc----h----------------------h-----hhhhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHH
Q 028525 75 GF----I----------------------S-----NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDES 121 (208)
Q Consensus 75 ~~----~----------------------~-----~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~ 121 (208)
.. . . ......+...++.+||............|...++ ..+.+..-.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~~~~~~YsasKaal~~ltk~lA~ 192 (294)
T d1w6ua_ 113 GNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAA 192 (294)
T ss_dssp CCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhcccccchHHHHHHHHHHHHHHHHH
Confidence 10 0 0 0112234446677777655443333444554332 111111222
Q ss_pred HHHhcCCCEEEEeccccccCCCCc----cc-e--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 122 MLMASGIPYTIIRTGVLQNTPGGK----QG-F--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~~~----~~-~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
.+...|+++..|.||++....... .. . .+....+.......+|+|.++..++.+.. -.|+++.+.+|
T Consensus 193 ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~pl~R~~~pediA~~v~fL~sd~s~~itG~~i~vDGG 268 (294)
T d1w6ua_ 193 EWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAFLCSDYASWINGAVIKFDGG 268 (294)
T ss_dssp HHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence 344579999999999985322111 00 0 00011112334567999999999987543 35788888765
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.23 E-value=3.5e-11 Score=89.22 Aligned_cols=180 Identities=14% Similarity=0.132 Sum_probs=107.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
++++.||+++++.|+++|++|++..|+.++..+ ..+..+.++++|++|++++.++++ ..|++|++++
T Consensus 12 Gas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDiLinnAg~~~ 91 (241)
T d2a4ka1 12 GAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAH 91 (241)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEGGGGTT
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccEecccccccc
Confidence 468899999999999999999999999877432 335568889999999999977764 4799998721
Q ss_pred -Cch----------------------hh-hhhh-cCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHHHHHhcC
Q 028525 75 -GFI----------------------SN-AGSL-KGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDESMLMASG 127 (208)
Q Consensus 75 -~~~----------------------~~-a~~~-~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~~l~~~~ 127 (208)
+.+ .. .+.. .+-+.++++|+.+... ......|...++ ..+.+..-..+...+
T Consensus 92 ~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~-~~~~~~Y~~sK~al~~lt~~lA~el~~~g 170 (241)
T d2a4ka1 92 SALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG-AFGLAHYAAGKLGVVGLARTLALELARKG 170 (241)
T ss_dssp TTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC-HHHHHHHHHCSSHHHHHHHHHHHHHTTTT
T ss_pred ccchhhhhccccccccccccccccccccccccccccccceeecccccccc-ccCccccchhhHHHHHHHHHHHHHHhHhC
Confidence 110 00 1111 2223455555544332 112223333221 111111223344578
Q ss_pred CCEEEEeccccccCCCCcc---ce-eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 128 IPYTIIRTGVLQNTPGGKQ---GF-QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 128 ~~~tivRp~~~~~~~~~~~---~~-~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
+++..|.||.+-.+..... .. .+....+...+...+|+|.+++.++.+.. -.|+++.+.+|
T Consensus 171 IrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~fL~S~~s~~itG~~i~vDGG 237 (241)
T d2a4ka1 171 VRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPLGRAGRPEEVAQAALFLLSEESAYITGQALYVDGG 237 (241)
T ss_dssp CEEEEEEECSBCCGGGTTSCHHHHHHHHHTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CEEeeeccCcCCCHHHHhhhHhHHHHHHhCCCCCCCcCHHHHHHHHHHHhcchhCCCcCceEEeCCC
Confidence 9999999998743221110 00 01111122344567999999999886543 24677777644
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.22 E-value=8.5e-11 Score=87.89 Aligned_cols=175 Identities=10% Similarity=0.011 Sum_probs=105.1
Q ss_pred ccHHHHHHHHHhCCCcEEEEEcCchhhh---h--hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCCC----
Q 028525 12 MNFRMVILSLIVKRTRIKALVKDKRNAM---E--SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSEG---- 75 (208)
Q Consensus 12 ~iG~~l~~~Ll~~g~~V~~~~R~~~~~~---~--~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~~---- 75 (208)
-||++++++|+++|++|.+..|+.+... + ........+.+|++|++++.++++ +.|++|++++.
T Consensus 21 GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iDilVnnag~~~~~ 100 (256)
T d1ulua_ 21 SLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPRE 100 (256)
T ss_dssp SHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSSEEEEEECCCCCCHH
T ss_pred hHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcCCceEEEecccccccc
Confidence 5999999999999999988888764321 1 123357789999999999888764 46999976221
Q ss_pred ----chh-------------------h-------hhhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHHHHHH
Q 028525 76 ----FIS-------------------N-------AGSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQDESML 123 (208)
Q Consensus 76 ----~~~-------------------~-------a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~e~~l 123 (208)
... . .+++. .++|++||............|...++ ..+.+..-..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~--G~Iv~isS~~~~~~~~~~~~Y~asKaal~~ltr~lA~el 178 (256)
T d1ulua_ 101 AMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREG--GGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYEL 178 (256)
T ss_dssp HHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE--EEEEEEECGGGTSBCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccC--CEEEEEeehHhcCCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 000 0 11112 47999999887654444445554332 11111122334
Q ss_pred HhcCCCEEEEeccccccCCCCccce------eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQGF------QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~~~------~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
...|+++..|.||.+.......... .+....+.......+|+|.+++.++.+.. -.|+++.+.+|
T Consensus 179 a~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG 251 (256)
T d1ulua_ 179 GPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAG 251 (256)
T ss_dssp GGGTCEEEEEEECCC----------CHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cccCCEEeeeccceeeeccccchhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCccCCeEEECcC
Confidence 4579999999999875432211000 00001112334567999999999886543 24777877644
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.2e-10 Score=87.06 Aligned_cols=170 Identities=16% Similarity=0.046 Sum_probs=103.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----hc----CCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----SF----GTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~~----~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
++++.||+++++.|+++|++|++..|++++..+ .. +.++.++.+|++|++++.++++ +.|++|++
T Consensus 17 Gas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g~iD~lVnn 96 (257)
T d1xg5a_ 17 GASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINN 96 (257)
T ss_dssp STTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEec
Confidence 358999999999999999999999999876322 11 2357889999999998888763 57999977
Q ss_pred CCC----ch--------------------------hhhhhhcC--CCeEEEeceeeeccCC--CCcccccchhH--HHhH
Q 028525 73 SEG----FI--------------------------SNAGSLKG--VQHVILLSQLSVYRGS--GGIQALMKGNA--RKLA 116 (208)
Q Consensus 73 ~~~----~~--------------------------~~a~~~~g--v~~~v~~Ss~~~~~~~--~~~~~~~~~~~--~~~~ 116 (208)
++. .+ ...+.+.+ -.++|++||.+..... .....|...++ ..+.
T Consensus 97 Ag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~p~~~~~~Y~~sKaal~~lt 176 (257)
T d1xg5a_ 97 AGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALT 176 (257)
T ss_dssp CCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSCGGGHHHHHHHHHHHHHH
T ss_pred ccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCCCCcccHHHHHHHHHHHhCH
Confidence 321 10 11223333 3589999998765321 11223443221 1111
Q ss_pred HHHHHHH--HhcCCCEEEEeccccccCCCC----ccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 117 EQDESML--MASGIPYTIIRTGVLQNTPGG----KQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 117 ~~~e~~l--~~~~~~~tivRp~~~~~~~~~----~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
+..-..| ...++++..|.||.+-..... ..........+...+...+|+|++++.++.++.
T Consensus 177 r~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~fL~s~~a 243 (257)
T d1xg5a_ 177 EGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEAVIYVLSTPA 243 (257)
T ss_dssp HHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHHC---CBCHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhcCCCCCCcCHHHHHHHHHHHhCChh
Confidence 1111223 246899999999987432110 000001011122445678999999999988765
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.21 E-value=6.1e-11 Score=89.58 Aligned_cols=182 Identities=9% Similarity=0.022 Sum_probs=112.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----h--c---CCceEEEEcCCCCHHHHHHHhc-------CCCEEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----S--F---GTYVESMAGDASNKKFLKTALR-------GVRSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~--~---~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~ 71 (208)
++++.||++++++|+++|++|.+.+|+.+++.+ . . ..++..+.+|++|++++.++++ ..|++|+
T Consensus 11 Gas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVn 90 (274)
T d1xhla_ 11 GSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKFGKIDILVN 90 (274)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHcCCceEEEe
Confidence 457789999999999999999999999876321 1 1 1357899999999998888763 4699997
Q ss_pred cCCC-----c---------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHH
Q 028525 72 PSEG-----F---------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAE 117 (208)
Q Consensus 72 ~~~~-----~---------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~ 117 (208)
+++. . ....+.+.+-.+++++||.+..........|...++ ..+.+
T Consensus 91 nAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~~~~~~Y~asKaal~~ltk 170 (274)
T d1xhla_ 91 NAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTR 170 (274)
T ss_dssp CCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCCTTSHHHHHHHHHHHHHHH
T ss_pred ecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccccCCCCceehhhhhHHHHHHH
Confidence 6221 0 011234455567888887765543333444554332 11112
Q ss_pred HHHHHHHhcCCCEEEEeccccccCCC----Cccc-----ee-e---ecCCcCCCcccHHHHHHHHHHHhhCC--C-CCCc
Q 028525 118 QDESMLMASGIPYTIIRTGVLQNTPG----GKQG-----FQ-F---EEGCAANGSLSKEDAAFICVEALESI--P-QTGL 181 (208)
Q Consensus 118 ~~e~~l~~~~~~~tivRp~~~~~~~~----~~~~-----~~-~---~~~~~~~~~v~~~Dva~~~~~~l~~~--~-~~~~ 181 (208)
..-..+...|+++..|.||++..+.. .... .. + ....+....-..+|||.+++.++..+ . -.|+
T Consensus 171 ~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iPlgR~g~pediA~~v~fL~S~d~s~~itG~ 250 (274)
T d1xhla_ 171 CTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFLADRNLSSYIIGQ 250 (274)
T ss_dssp HHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSC
T ss_pred HHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHcCCccccCccCc
Confidence 12233445799999999999843210 0000 00 0 00011223446799999999888532 3 3578
Q ss_pred EEEEeeCC
Q 028525 182 IFEVVNGE 189 (208)
Q Consensus 182 ~~~i~~~~ 189 (208)
++.+.+|-
T Consensus 251 ~i~vDGG~ 258 (274)
T d1xhla_ 251 SIVADGGS 258 (274)
T ss_dssp EEEESTTG
T ss_pred EEEeCcCH
Confidence 88887664
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=3.3e-10 Score=85.97 Aligned_cols=171 Identities=13% Similarity=0.105 Sum_probs=105.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEE---cCchh---hh----h--hcCCceEEEEcCCCCHHHHHHHhcC-----CCEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALV---KDKRN---AM----E--SFGTYVESMAGDASNKKFLKTALRG-----VRSII 70 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~---R~~~~---~~----~--~~~~~v~~v~~Dl~d~~~l~~~~~~-----~d~vi 70 (208)
+.++-||+++++.|+++|.+|+.+. |+.+. .. + ..+.++..+.+|++|++++.++++. .|+++
T Consensus 9 GassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g~idilv 88 (285)
T d1jtva_ 9 GCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEGRVDVLV 88 (285)
T ss_dssp CCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTSCCSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccccchhhhh
Confidence 4688899999999999998765554 44332 11 1 1234789999999999999988743 58999
Q ss_pred EcCC----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHH
Q 028525 71 CPSE----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQ 118 (208)
Q Consensus 71 ~~~~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~ 118 (208)
++++ +. ....+++.+-.++|++||.....+......|..+++- .+.+.
T Consensus 89 nnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~~~~~~Y~asKaal~~l~~~ 168 (285)
T d1jtva_ 89 CNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCES 168 (285)
T ss_dssp ECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTTCHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCCCCchHHHHHHHHHHHHHHH
Confidence 7622 11 1123566777799999999876554445556654321 11222
Q ss_pred HHHHHHhcCCCEEEEeccccccCCCCcc---cee-eecCC-----------------cCCCcccHHHHHHHHHHHhhCCC
Q 028525 119 DESMLMASGIPYTIIRTGVLQNTPGGKQ---GFQ-FEEGC-----------------AANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 119 ~e~~l~~~~~~~tivRp~~~~~~~~~~~---~~~-~~~~~-----------------~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
....+...|++++.|.||++........ ... ....+ ........+|||++++.+++.+.
T Consensus 169 la~El~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PeeVA~~v~~~~~~~~ 248 (285)
T d1jtva_ 169 LAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTALRAPK 248 (285)
T ss_dssp HHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHCBCHHHHHHHHHHHHHCSS
T ss_pred HHHHhhccCcEEEEEecCCCCChHHHHhccCHHHHhhccchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHhCCC
Confidence 2233456799999999999853221110 000 00000 00112356999999999998765
Q ss_pred C
Q 028525 178 Q 178 (208)
Q Consensus 178 ~ 178 (208)
.
T Consensus 249 p 249 (285)
T d1jtva_ 249 P 249 (285)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.16 E-value=1.8e-10 Score=86.81 Aligned_cols=181 Identities=9% Similarity=0.009 Sum_probs=108.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh----hc-----CCceEEEEcCCCCHHHHHHHhc-------CCCEEEE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME----SF-----GTYVESMAGDASNKKFLKTALR-------GVRSIIC 71 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~----~~-----~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~ 71 (208)
++++.||++++++|+++|++|.+.+|+.+++.+ .. ..++..+.+|++|++++.++++ +.|++|+
T Consensus 12 Gas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilvn 91 (272)
T d1xkqa_ 12 GSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVN 91 (272)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHhCCceEEEe
Confidence 458889999999999999999999999876321 11 1257899999999998887764 5799997
Q ss_pred cCC----Cch------------------------------hhhhhhcCCCeEEEe-ceeeeccCCCCcccccchhH--HH
Q 028525 72 PSE----GFI------------------------------SNAGSLKGVQHVILL-SQLSVYRGSGGIQALMKGNA--RK 114 (208)
Q Consensus 72 ~~~----~~~------------------------------~~a~~~~gv~~~v~~-Ss~~~~~~~~~~~~~~~~~~--~~ 114 (208)
+++ +.+ ...+++.+- ++|.+ ||.+...+......|...++ ..
T Consensus 92 nAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g-~iI~~~Ss~a~~~~~~~~~~Y~asKaal~~ 170 (272)
T d1xkqa_ 92 NAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKG-EIVNVSSIVAGPQAQPDFLYYAIAKAALDQ 170 (272)
T ss_dssp CCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEECCGGGSSSCCCSSHHHHHHHHHHHH
T ss_pred CCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCC-ccccccchhccccCCCCcchhhhHHHHHHH
Confidence 622 100 011333333 45555 44444433333444554332 11
Q ss_pred hHHHHHHHHHhcCCCEEEEeccccccCCC----Cccc--e-------eeecCCcCCCcccHHHHHHHHHHHhhCC--C-C
Q 028525 115 LAEQDESMLMASGIPYTIIRTGVLQNTPG----GKQG--F-------QFEEGCAANGSLSKEDAAFICVEALESI--P-Q 178 (208)
Q Consensus 115 ~~~~~e~~l~~~~~~~tivRp~~~~~~~~----~~~~--~-------~~~~~~~~~~~v~~~Dva~~~~~~l~~~--~-~ 178 (208)
+.+..-..+...++++..|.||++..... .... . ......+.......+|+|.+++.++.++ . -
T Consensus 171 ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~pediA~~v~fL~S~~as~~i 250 (272)
T d1xkqa_ 171 YTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIILFLADRNLSFYI 250 (272)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTC
T ss_pred HHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCcchhCCc
Confidence 11212233456799999999998743210 0000 0 0001111233446799999999988643 3 3
Q ss_pred CCcEEEEeeCC
Q 028525 179 TGLIFEVVNGE 189 (208)
Q Consensus 179 ~~~~~~i~~~~ 189 (208)
.|+++.+.+|-
T Consensus 251 TG~~i~vDGG~ 261 (272)
T d1xkqa_ 251 LGQSIVADGGT 261 (272)
T ss_dssp CSCEEEESTTG
T ss_pred cCeEEEeCcCH
Confidence 57888887554
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.15 E-value=5.5e-10 Score=83.26 Aligned_cols=182 Identities=12% Similarity=0.028 Sum_probs=113.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh------hhc-CCceEEEEcCCC-CHHHHHHHh-------cCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM------ESF-GTYVESMAGDAS-NKKFLKTAL-------RGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~------~~~-~~~v~~v~~Dl~-d~~~l~~~~-------~~~d~vi~~ 72 (208)
++++-||.+++++|+++|++|+++.|+.++.. ... ..++.++..|++ +.+++.+++ .++|++|++
T Consensus 12 Ggs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~iDilvnn 91 (254)
T d1sbya1 12 AALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILING 91 (254)
T ss_dssp TTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred cCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHcCCCCEEEeC
Confidence 35788999999999999999999988765421 112 236888999997 555555544 357999977
Q ss_pred CCCc----------------------hhhhhhhc---CCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHHHHHHh
Q 028525 73 SEGF----------------------ISNAGSLK---GVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDESMLMA 125 (208)
Q Consensus 73 ~~~~----------------------~~~a~~~~---gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e~~l~~ 125 (208)
++.. ....+.+. +..++|++||.....+......|...++-. +.+.....+..
T Consensus 92 AG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~~~~~Y~asKaal~~~t~~la~el~~ 171 (254)
T d1sbya1 92 AGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPI 171 (254)
T ss_dssp CCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCCCCCHHHHHHHHHHHHHHHHHHhhccc
Confidence 4321 11223222 345899999988776554455565543211 22222244566
Q ss_pred cCCCEEEEeccccccCCC--Cccceeee----cCCcCCCcccHHHHHHHHHHHhhCCCCCCcEEEEeeCCc
Q 028525 126 SGIPYTIIRTGVLQNTPG--GKQGFQFE----EGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEE 190 (208)
Q Consensus 126 ~~~~~tivRp~~~~~~~~--~~~~~~~~----~~~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~~~ 190 (208)
.++++..|.||++..+.. ........ .........+.+++|++++.+++... .|+++.+.+|..
T Consensus 172 ~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~va~~~~~~~~~~~-tG~vi~vdgG~l 241 (254)
T d1sbya1 172 TGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIEANK-NGAIWKLDLGTL 241 (254)
T ss_dssp HSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTTSCCEEHHHHHHHHHHHHHHCC-TTCEEEEETTEE
T ss_pred cCeEEEEEEeCCCcCccccccccchhHHHHHHhccccCCCCCHHHHHHHHHHhhhCCC-CCCEEEECCCEe
Confidence 899999999999853210 00000000 00011233467999999998887543 678888876653
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.14 E-value=2.1e-10 Score=85.86 Aligned_cols=180 Identities=13% Similarity=0.103 Sum_probs=106.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh----h---hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA----M---ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~----~---~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
++++.||++++++|+++|++|++..|+.++. . ...+.++..+.+|++|++++.+.++ +.|++|+++
T Consensus 13 Gas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~idilinna 92 (259)
T d1ja9a_ 13 GAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNS 92 (259)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred CCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcCCCcEEEecc
Confidence 4688999999999999999999877665431 1 1234578899999999999888774 469999762
Q ss_pred C----Cch--------------------------hhhhhhcCCCeEEEeceee-eccCCCCcccccchhH--HHhHHHHH
Q 028525 74 E----GFI--------------------------SNAGSLKGVQHVILLSQLS-VYRGSGGIQALMKGNA--RKLAEQDE 120 (208)
Q Consensus 74 ~----~~~--------------------------~~a~~~~gv~~~v~~Ss~~-~~~~~~~~~~~~~~~~--~~~~~~~e 120 (208)
+ +.. ...+++.+ ++++++|.. ...+......|...++ ..+.+..-
T Consensus 93 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g--~~iii~s~~~~~~~~~~~~~Y~asK~al~~l~r~lA 170 (259)
T d1ja9a_ 93 GMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGG--RIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFA 170 (259)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEE--EEEEECCGGGTCCSCCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCC--cccccccccccccCCCCchhHHHHHHHHHHHHHHHH
Confidence 2 110 11123333 566665543 3322222333433221 11112222
Q ss_pred HHHHhcCCCEEEEeccccccCC---------C-Ccccee-------eecCCcCCCcccHHHHHHHHHHHhhCCCC--CCc
Q 028525 121 SMLMASGIPYTIIRTGVLQNTP---------G-GKQGFQ-------FEEGCAANGSLSKEDAAFICVEALESIPQ--TGL 181 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~---------~-~~~~~~-------~~~~~~~~~~v~~~Dva~~~~~~l~~~~~--~~~ 181 (208)
..+...++++..|.||++.... . ...... +....+...+...+|||++++.++.+... .|+
T Consensus 171 ~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~g~p~eVa~~v~fL~S~~a~~itG~ 250 (259)
T d1ja9a_ 171 VDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSALCQEESEWINGQ 250 (259)
T ss_dssp HHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSC
T ss_pred HHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCCcCc
Confidence 3344579999999999974210 0 000000 00111223455679999999999876542 477
Q ss_pred EEEEeeCC
Q 028525 182 IFEVVNGE 189 (208)
Q Consensus 182 ~~~i~~~~ 189 (208)
.+.+.+|.
T Consensus 251 ~i~vDGG~ 258 (259)
T d1ja9a_ 251 VIKLTGGG 258 (259)
T ss_dssp EEEESTTC
T ss_pred eEEeCCCC
Confidence 88776553
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.14 E-value=1.1e-10 Score=88.19 Aligned_cols=179 Identities=14% Similarity=0.070 Sum_probs=109.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~--- 74 (208)
++++.||++++++|+++|++|.+.+|+.+++.+ ..+.++..+.+|++|++++.++++ ..|++|++++
T Consensus 12 Gas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idilvnnAG~~~ 91 (276)
T d1bdba_ 12 GGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDTLIPNAGIWD 91 (276)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEECCCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCcccccccccccC
Confidence 358889999999999999999999999877433 234578999999999998888763 5799996622
Q ss_pred --Cc------------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hHHHHH
Q 028525 75 --GF------------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LAEQDE 120 (208)
Q Consensus 75 --~~------------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~~~~e 120 (208)
.. ....+++.+ .++|++||.....+......|...++-. +.+..-
T Consensus 92 ~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S~~~~~~~~~~~~Y~asKaal~~ltr~lA 170 (276)
T d1bdba_ 92 YSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTISNAGFYPNGGGPLYTAAKHAIVGLVRELA 170 (276)
T ss_dssp TTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTSTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeeechhccCCCCCchHHHHHHHHHHHHHHHH
Confidence 10 011233444 4788888876554443444555533211 111111
Q ss_pred HHHHhcCCCEEEEeccccccCCCCcccee-----e---------ecCCcCCCcccHHHHHHHHHHHhhCC--C-CCCcEE
Q 028525 121 SMLMASGIPYTIIRTGVLQNTPGGKQGFQ-----F---------EEGCAANGSLSKEDAAFICVEALESI--P-QTGLIF 183 (208)
Q Consensus 121 ~~l~~~~~~~tivRp~~~~~~~~~~~~~~-----~---------~~~~~~~~~v~~~Dva~~~~~~l~~~--~-~~~~~~ 183 (208)
..+. .++++..|.||++..+........ . ....+....-..+|+|.+++.++..+ . -.|+.+
T Consensus 171 ~ela-~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peeva~~v~fL~S~~~a~~itG~~i 249 (276)
T d1bdba_ 171 FELA-PYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIGRMPEVEEYTGAYVFFATRGDAAPATGALL 249 (276)
T ss_dssp HHHT-TTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCTTSSCCCGGGGSHHHHHHHCHHHHTTCSSCEE
T ss_pred HHhh-cceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCcccCCeeCcEE
Confidence 1232 359999999999853321110000 0 00011122335699999998877532 2 357888
Q ss_pred EEeeC
Q 028525 184 EVVNG 188 (208)
Q Consensus 184 ~i~~~ 188 (208)
.+.+|
T Consensus 250 ~VDGG 254 (276)
T d1bdba_ 250 NYDGG 254 (276)
T ss_dssp EESSS
T ss_pred EECcC
Confidence 88644
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.13 E-value=9.9e-11 Score=87.74 Aligned_cols=181 Identities=11% Similarity=0.085 Sum_probs=108.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh-------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM-------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~-------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~ 73 (208)
++++.||++++++|+++|++|.+..|+.++.. +..+.++..+.+|++|++++.++++ ..|++|+++
T Consensus 16 Gas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA 95 (260)
T d1h5qa_ 16 GGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANA 95 (260)
T ss_dssp TTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCSEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhCCCcEecccc
Confidence 35788999999999999999999999977532 1234578899999999999888874 469999773
Q ss_pred C----Cch--------------------------hhhhh-hcCCCeEEEeceeeeccCC-------CCcccccchhH--H
Q 028525 74 E----GFI--------------------------SNAGS-LKGVQHVILLSQLSVYRGS-------GGIQALMKGNA--R 113 (208)
Q Consensus 74 ~----~~~--------------------------~~a~~-~~gv~~~v~~Ss~~~~~~~-------~~~~~~~~~~~--~ 113 (208)
+ +.+ ...+. +.+-.+++..||....... .....|...++ .
T Consensus 96 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~~~~~~~~~Y~asKaal~ 175 (260)
T d1h5qa_ 96 GVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACS 175 (260)
T ss_dssp CCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEETTEECSCHHHHHHHHHHH
T ss_pred cccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccccccccCccccchhhhhhhHH
Confidence 2 110 11222 3344466666655433211 11223433221 1
Q ss_pred HhHHHHHHHHHhcCCCEEEEeccccccCCCCcc--ce--eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEee
Q 028525 114 KLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQ--GF--QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVN 187 (208)
Q Consensus 114 ~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~--~~--~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~ 187 (208)
.+.+..-..+...|+++..|.||++........ .. .+....+...+...+|+|.+++.++.+.. -.|+++.+.+
T Consensus 176 ~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDG 255 (260)
T d1h5qa_ 176 NLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLNRFAQPEEMTGQAILLLSDHATYMTGGEYFIDG 255 (260)
T ss_dssp HHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECT
T ss_pred HHHHHHHHHhchhCeEEeecCCCcccCcchhccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcchhCCCcCceEEECC
Confidence 111112233445799999999999843211110 00 01111112334567999999998886543 2478888775
Q ss_pred C
Q 028525 188 G 188 (208)
Q Consensus 188 ~ 188 (208)
|
T Consensus 256 G 256 (260)
T d1h5qa_ 256 G 256 (260)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.12 E-value=3.1e-10 Score=85.54 Aligned_cols=178 Identities=8% Similarity=0.035 Sum_probs=106.9
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhh-h------hhcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNA-M------ESFGTYVESMAGDASNKKFLKTALR-------GVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-~------~~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~~~ 74 (208)
+++-||++++++|+++|++|++.+|+.++. . ...+..+.++.+|++|++++.+.++ +.|++|++.+
T Consensus 26 as~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~idilV~nag 105 (272)
T d1g0oa_ 26 AGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSG 105 (272)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhCCCCccccccc
Confidence 588999999999999999999998875431 1 1224468899999999998888864 4699997722
Q ss_pred ----Cch--------------------------hhhhhhcCCCeEEEeceeeec-cCCCCcccccchhH--HHhHHHHHH
Q 028525 75 ----GFI--------------------------SNAGSLKGVQHVILLSQLSVY-RGSGGIQALMKGNA--RKLAEQDES 121 (208)
Q Consensus 75 ----~~~--------------------------~~a~~~~gv~~~v~~Ss~~~~-~~~~~~~~~~~~~~--~~~~~~~e~ 121 (208)
..+ ...+.+. .++++++|.... ........|...++ ..+.+..-.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~--g~~i~i~s~~~~~~~~~~~~~Y~asKaal~~ltk~lA~ 183 (272)
T d1g0oa_ 106 VVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG--GRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAI 183 (272)
T ss_dssp CCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT--CEEEEECCGGGTCSSCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccc--cccccccccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 110 0112223 367777665433 22322333443221 111111223
Q ss_pred HHHhcCCCEEEEeccccccCCC---------Cccce--------eeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcE
Q 028525 122 MLMASGIPYTIIRTGVLQNTPG---------GKQGF--------QFEEGCAANGSLSKEDAAFICVEALESIP--QTGLI 182 (208)
Q Consensus 122 ~l~~~~~~~tivRp~~~~~~~~---------~~~~~--------~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~ 182 (208)
.+...|+++..|.||++..... ..... ......+...+...+|||.++..++.+.. -.|++
T Consensus 184 e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~~~peevA~~v~fL~s~~s~~itG~~ 263 (272)
T d1g0oa_ 184 DMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKV 263 (272)
T ss_dssp HHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCE
T ss_pred HhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccCCCCCCcCHHHHHHHHHHHhCchhcCccCce
Confidence 3445799999999999853210 00000 00011122445677999999999986544 24777
Q ss_pred EEEeeC
Q 028525 183 FEVVNG 188 (208)
Q Consensus 183 ~~i~~~ 188 (208)
+.+.+|
T Consensus 264 i~vDGG 269 (272)
T d1g0oa_ 264 IGIDGG 269 (272)
T ss_dssp EEESTT
T ss_pred EeECCC
Confidence 777654
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=1.2e-10 Score=89.08 Aligned_cols=174 Identities=11% Similarity=-0.055 Sum_probs=104.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh---------hh---hhcCCceEEEEcCCCCHHHHHHHh-------cCCCE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN---------AM---ESFGTYVESMAGDASNKKFLKTAL-------RGVRS 68 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~---------~~---~~~~~~v~~v~~Dl~d~~~l~~~~-------~~~d~ 68 (208)
+.++.||++++++|+++|++|.+.+|+.+. +. +........+..|+.|.+++.+++ .+.|+
T Consensus 14 Gas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~G~iDi 93 (302)
T d1gz6a_ 14 GAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTALDTFGRIDV 93 (302)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHHHHTSCCCE
T ss_pred CCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHcCCCCE
Confidence 458889999999999999999998776432 11 111223345667888866655544 25799
Q ss_pred EEEcCC----Cc--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHH--hH
Q 028525 69 IICPSE----GF--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK--LA 116 (208)
Q Consensus 69 vi~~~~----~~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~--~~ 116 (208)
+|++++ +. ....+++++-.+||++||.....+......|...++-. +.
T Consensus 94 LVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~~~~~~~Y~asKaal~~lt 173 (302)
T d1gz6a_ 94 VVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLA 173 (302)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHH
T ss_pred EEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCCCCCcHHHHHHHHHHHHHH
Confidence 997732 11 11235566667999999987765444455565533211 11
Q ss_pred HHHHHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC-CCCcEEEEee
Q 028525 117 EQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP-QTGLIFEVVN 187 (208)
Q Consensus 117 ~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~-~~~~~~~i~~ 187 (208)
+..-..+...|+++..|.||.+.... .. .. +.........+|+|.+++.++.+.. ..|+++.+.+
T Consensus 174 ~~la~E~~~~gIrVN~I~PG~~~t~~-~~-~~----~~~~~~~~~PedvA~~v~fL~S~~a~itG~~i~vdG 239 (302)
T d1gz6a_ 174 NTLVIEGRKNNIHCNTIAPNAGSRMT-ET-VM----PEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGA 239 (302)
T ss_dssp HHHHHHTGGGTEEEEEEEEECCSTTT-GG-GS----CHHHHHHSCGGGTHHHHHHHTSTTCCCCSCEEEEET
T ss_pred HHHHHHHhccCCceeeeCCCCCCcch-hh-cC----cHhhHhcCCHHHHHHHHHHHcCCCcCCCCcEEEeCC
Confidence 11112234579999999999763221 11 01 0111223456999999999886433 2366665543
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=4.9e-09 Score=77.64 Aligned_cols=178 Identities=12% Similarity=0.030 Sum_probs=106.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh---hhcCCceEEEEcCCCCHHHHHHHh-------cCCCEEEEc-----
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM---ESFGTYVESMAGDASNKKFLKTAL-------RGVRSIICP----- 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~---~~~~~~v~~v~~Dl~d~~~l~~~~-------~~~d~vi~~----- 72 (208)
++++.||++++++|+++|++|++.+|+.++.. +...........|+.+.+.+.+.. ...|.++..
T Consensus 12 Gas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (248)
T d2o23a1 12 GGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAV 91 (248)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccc
Confidence 46888999999999999999999999987642 233457888899999877665554 245777754
Q ss_pred CCCc---------------------------hhhh----------hhhcCCCeEEEeceeeeccCCCCcccccchhH--H
Q 028525 73 SEGF---------------------------ISNA----------GSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--R 113 (208)
Q Consensus 73 ~~~~---------------------------~~~a----------~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~ 113 (208)
.+.. ...+ ++..+-.+||++||.....+......|...++ .
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~ 171 (248)
T d2o23a1 92 ASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIV 171 (248)
T ss_dssp CCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCTTCHHHHHHHHHHH
T ss_pred CCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccCCCCchHHHHHHHHHH
Confidence 1110 0001 11123348999999987665444455655332 1
Q ss_pred HhHHHHHHHHHhcCCCEEEEeccccccCCCCcccee----eecCCcC-CCcccHHHHHHHHHHHhhCCCCCCcEEEE
Q 028525 114 KLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQ----FEEGCAA-NGSLSKEDAAFICVEALESIPQTGLIFEV 185 (208)
Q Consensus 114 ~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~----~~~~~~~-~~~v~~~Dva~~~~~~l~~~~~~~~~~~i 185 (208)
.+.+..-..+...++++..|.||++........... +....+. ..+...+|||.+++.+++.+--.|+++++
T Consensus 172 ~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~~R~g~peevA~~v~fL~s~~~itGq~I~v 248 (248)
T d2o23a1 172 GMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPFPSRLGDPAEYAHLVQAIIENPFLNGEVIRL 248 (248)
T ss_dssp HHHHHHHHHHGGGTEEEEEEEECCBCCC----------CHHHHTCSSSCSCBCHHHHHHHHHHHHHCTTCCSCEEEE
T ss_pred HHHHHHHHHhcccCcceeeeccCceecchhhcCCHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHhCCCCCceEeEC
Confidence 111212233445799999999999753321110000 1011111 22446799999999888754344666654
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.98 E-value=1.6e-09 Score=80.96 Aligned_cols=177 Identities=14% Similarity=0.036 Sum_probs=105.2
Q ss_pred cccCccHHHHHHHHHh---CCCcEEEEEcCchhhhhh--------cCCceEEEEcCCCCHHHHHHHhc-----------C
Q 028525 8 KRKKMNFRMVILSLIV---KRTRIKALVKDKRNAMES--------FGTYVESMAGDASNKKFLKTALR-----------G 65 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~---~g~~V~~~~R~~~~~~~~--------~~~~v~~v~~Dl~d~~~l~~~~~-----------~ 65 (208)
++++.||++++++|.+ +|++|++..|+.+++.+. .+..+..+.+|++|++++.++++ .
T Consensus 13 Gas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~~~~~~~~~ 92 (259)
T d1oaaa_ 13 GASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQ 92 (259)
T ss_dssp SCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHHSCCCTTCC
T ss_pred CCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHhhhhccCc
Confidence 3577899999999975 799999999998763221 12367889999999999888762 1
Q ss_pred CCEEEEcCC-------Cch--------------------------hhhhhhcC--CCeEEEeceeeeccCCCCcccccch
Q 028525 66 VRSIICPSE-------GFI--------------------------SNAGSLKG--VQHVILLSQLSVYRGSGGIQALMKG 110 (208)
Q Consensus 66 ~d~vi~~~~-------~~~--------------------------~~a~~~~g--v~~~v~~Ss~~~~~~~~~~~~~~~~ 110 (208)
.|++|++++ +.+ ...+++.+ -.++|++||.....+......|..+
T Consensus 93 ~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~as 172 (259)
T d1oaaa_ 93 RLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAG 172 (259)
T ss_dssp EEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred eEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccCCCccchHHHHH
Confidence 245665421 110 01123333 3489999998876554444556553
Q ss_pred hHHHhHHHHHHH-HHhcCCCEEEEeccccccCCCC------ccce---eeecCCcCCCcccHHHHHHHHHHHhhCCCC-C
Q 028525 111 NARKLAEQDESM-LMASGIPYTIIRTGVLQNTPGG------KQGF---QFEEGCAANGSLSKEDAAFICVEALESIPQ-T 179 (208)
Q Consensus 111 ~~~~~~~~~e~~-l~~~~~~~tivRp~~~~~~~~~------~~~~---~~~~~~~~~~~v~~~Dva~~~~~~l~~~~~-~ 179 (208)
++-... .++.+ ....++++..|.||++...... .... .+............+|+|++++.++.+... .
T Consensus 173 Kaal~~-lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~evA~~i~~ll~~~s~~T 251 (259)
T d1oaaa_ 173 KAARDM-LYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQKDTFQS 251 (259)
T ss_dssp HHHHHH-HHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHHHTTCSBCHHHHHHHHHHHHHHCCSCT
T ss_pred HHHHHH-HHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhhhccCCC
Confidence 321111 11111 1246899999999998532110 0000 000000112345679999999999876543 3
Q ss_pred CcEEEE
Q 028525 180 GLIFEV 185 (208)
Q Consensus 180 ~~~~~i 185 (208)
|+.+++
T Consensus 252 G~~idv 257 (259)
T d1oaaa_ 252 GAHVDF 257 (259)
T ss_dssp TEEEET
T ss_pred CCeEEe
Confidence 565554
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.97 E-value=2.3e-08 Score=74.02 Aligned_cols=133 Identities=12% Similarity=0.065 Sum_probs=85.1
Q ss_pred cccCccHHHHHHHHHh---CCCcEEEEEcCchhhhhh-----cCCceEEEEcCCCCHHHHHHHhc---------CCCEEE
Q 028525 8 KRKKMNFRMVILSLIV---KRTRIKALVKDKRNAMES-----FGTYVESMAGDASNKKFLKTALR---------GVRSII 70 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~---~g~~V~~~~R~~~~~~~~-----~~~~v~~v~~Dl~d~~~l~~~~~---------~~d~vi 70 (208)
+.++-||++++++|++ +|++|++.+|+.++..+. ...++.++.+|++|++++.++++ ..|++|
T Consensus 9 Gas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~iDiLv 88 (248)
T d1snya_ 9 GCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLF 88 (248)
T ss_dssp CCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGGCCSEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcCCcceEE
Confidence 4688899999999974 689999999998764221 24579999999999888876643 369999
Q ss_pred EcCC-----Cch--------------------------hhhhhh-----------cCCCeEEEeceeeeccCC---CCcc
Q 028525 71 CPSE-----GFI--------------------------SNAGSL-----------KGVQHVILLSQLSVYRGS---GGIQ 105 (208)
Q Consensus 71 ~~~~-----~~~--------------------------~~a~~~-----------~gv~~~v~~Ss~~~~~~~---~~~~ 105 (208)
++++ ... ...+++ .+..++|.+||....... ....
T Consensus 89 nNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~~~~~~~~~~ 168 (248)
T d1snya_ 89 NNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMY 168 (248)
T ss_dssp ECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCSTTCCSCCCH
T ss_pred eeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCCCChH
Confidence 7622 110 011221 134689999987644221 1223
Q ss_pred cccchhHH--HhHHHHHHHHHhcCCCEEEEecccccc
Q 028525 106 ALMKGNAR--KLAEQDESMLMASGIPYTIIRTGVLQN 140 (208)
Q Consensus 106 ~~~~~~~~--~~~~~~e~~l~~~~~~~tivRp~~~~~ 140 (208)
.|..+++- .+.+.....+...++++..|.||++..
T Consensus 169 ~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T 205 (248)
T d1snya_ 169 AYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKT 205 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccC
Confidence 45443321 111222233456799999999999854
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=98.94 E-value=8.6e-09 Score=77.36 Aligned_cols=187 Identities=13% Similarity=0.004 Sum_probs=108.0
Q ss_pred chhhhc--cccC-----ccHHHHHHHHHhCCCcEEEEEcCchh---hhh--hcCCceEEEEcCCCCHHHHHHHhc-----
Q 028525 2 GPMKKM--KRKK-----MNFRMVILSLIVKRTRIKALVKDKRN---AME--SFGTYVESMAGDASNKKFLKTALR----- 64 (208)
Q Consensus 2 ~~~~~~--~~~G-----~iG~~l~~~Ll~~g~~V~~~~R~~~~---~~~--~~~~~v~~v~~Dl~d~~~l~~~~~----- 64 (208)
|.|+++ ..|| -||.+++++|+++|++|++..|+++. ..+ .......++..|+++.+++.+++.
T Consensus 1 g~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (274)
T d2pd4a1 1 GFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD 80 (274)
T ss_dssp CTTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CcCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHH
Confidence 566554 3454 59999999999999999999998642 111 123456788999999888877762
Q ss_pred --CCCEEEEcCCCc--------h-----------------------hhhhhhcCCCe-EEEeceeeeccCCCCcccccch
Q 028525 65 --GVRSIICPSEGF--------I-----------------------SNAGSLKGVQH-VILLSQLSVYRGSGGIQALMKG 110 (208)
Q Consensus 65 --~~d~vi~~~~~~--------~-----------------------~~a~~~~gv~~-~v~~Ss~~~~~~~~~~~~~~~~ 110 (208)
..|++|++.+.. . .......+-.+ ++.+|+.+..........|...
T Consensus 81 ~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~~~~~y~as 160 (274)
T d2pd4a1 81 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLA 160 (274)
T ss_dssp TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTCHHHHHH
T ss_pred cCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeecccccccccccchhhhHH
Confidence 458888762210 0 00111222223 4444555544433333334332
Q ss_pred hH--HHhHHHHHHHHHhcCCCEEEEeccccccCCCCc----ccee--eecCCcCCCcccHHHHHHHHHHHhhCCC--CCC
Q 028525 111 NA--RKLAEQDESMLMASGIPYTIIRTGVLQNTPGGK----QGFQ--FEEGCAANGSLSKEDAAFICVEALESIP--QTG 180 (208)
Q Consensus 111 ~~--~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~----~~~~--~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~ 180 (208)
+. ..+.+..-..+...|+++..|.||.+....... .... .....+.......+|||..++.++.+.. -.|
T Consensus 161 K~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pedIA~~v~fL~S~~s~~itG 240 (274)
T d2pd4a1 161 KAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGVSG 240 (274)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCS
T ss_pred HHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCchHHHHHHHhhhhhccCCcCHHHHHHHHHHHhChhhCCCcC
Confidence 21 111111223345589999999999885432211 0000 0011122455678999999999887543 247
Q ss_pred cEEEEeeC
Q 028525 181 LIFEVVNG 188 (208)
Q Consensus 181 ~~~~i~~~ 188 (208)
+++.+.+|
T Consensus 241 ~~i~vDGG 248 (274)
T d2pd4a1 241 EVHFVDAG 248 (274)
T ss_dssp CEEEESTT
T ss_pred ceEEECCC
Confidence 78877755
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=1.3e-08 Score=75.61 Aligned_cols=187 Identities=11% Similarity=0.035 Sum_probs=107.9
Q ss_pred chhhhc--ccc---C--ccHHHHHHHHHhCCCcEEEEEcCchhh---hhh--cCCceEEEEcCCCCHHHHHHHhc-----
Q 028525 2 GPMKKM--KRK---K--MNFRMVILSLIVKRTRIKALVKDKRNA---MES--FGTYVESMAGDASNKKFLKTALR----- 64 (208)
Q Consensus 2 ~~~~~~--~~~---G--~iG~~l~~~Ll~~g~~V~~~~R~~~~~---~~~--~~~~v~~v~~Dl~d~~~l~~~~~----- 64 (208)
|.++++ ..| | -||+++++.|+++|++|++..|+.... .+. .......+..|+.+..++...+.
T Consensus 1 g~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (258)
T d1qsga_ 1 GFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV 80 (258)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred CcCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhc
Confidence 556554 234 3 488999999999999999999985532 111 12356788899999887777663
Q ss_pred --CCCEEEEcCC---Cc-----h-----------------------hhhhh-h-cCCCeEEEeceeeeccCCCCcccccc
Q 028525 65 --GVRSIICPSE---GF-----I-----------------------SNAGS-L-KGVQHVILLSQLSVYRGSGGIQALMK 109 (208)
Q Consensus 65 --~~d~vi~~~~---~~-----~-----------------------~~a~~-~-~gv~~~v~~Ss~~~~~~~~~~~~~~~ 109 (208)
..|++|++.. .. . ..++. . .+-+.++++||.+...+......|..
T Consensus 81 ~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~~~~~~~Y~~ 160 (258)
T d1qsga_ 81 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGL 160 (258)
T ss_dssp CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTTTHHHH
T ss_pred ccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccCCCCcHHHHH
Confidence 2378886521 10 0 00010 1 12236788888776544333344544
Q ss_pred hhHHH--hHHHHHHHHHhcCCCEEEEeccccccCCCCccc---ee---eecCCcCCCcccHHHHHHHHHHHhhCCC--CC
Q 028525 110 GNARK--LAEQDESMLMASGIPYTIIRTGVLQNTPGGKQG---FQ---FEEGCAANGSLSKEDAAFICVEALESIP--QT 179 (208)
Q Consensus 110 ~~~~~--~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~---~~---~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~ 179 (208)
.++-. +.+..-..+...++++..|+||.+......... .. .....+...+...+|+|.+++.++.+.. -.
T Consensus 161 sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R~~~peeia~~v~fL~s~~s~~it 240 (258)
T d1qsga_ 161 AKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGIS 240 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHTSGGGTTCC
T ss_pred HHHHHHHHHHHHHHHhCccCceeecccccccccccccccchhhhHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCcc
Confidence 33211 112222334457899999999998533211100 00 0000112335567999999999886543 34
Q ss_pred CcEEEEeeC
Q 028525 180 GLIFEVVNG 188 (208)
Q Consensus 180 ~~~~~i~~~ 188 (208)
|+++.+.+|
T Consensus 241 G~~i~vDGG 249 (258)
T d1qsga_ 241 GEVVHVDGG 249 (258)
T ss_dssp SCEEEESTT
T ss_pred CceEEECcC
Confidence 777777644
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.87 E-value=5.3e-08 Score=72.05 Aligned_cols=166 Identities=17% Similarity=0.103 Sum_probs=96.5
Q ss_pred cccCccHHHHHHHHHhCCC--cEEEEEcCchhhhh---hcCCceEEEEcCCCCHHHHHHHhc---------CCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRT--RIKALVKDKRNAME---SFGTYVESMAGDASNKKFLKTALR---------GVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~--~V~~~~R~~~~~~~---~~~~~v~~v~~Dl~d~~~l~~~~~---------~~d~vi~~~ 73 (208)
++++-||++++++|+++|+ .|++..|+.++..+ ..+.++.++.+|++|.+++.++++ +.|++|+++
T Consensus 10 GassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~idilinnA 89 (250)
T d1yo6a1 10 GANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNA 89 (250)
T ss_dssp SCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCCCEEEECC
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence 4688999999999999995 68888999877433 234579999999999988877752 379999773
Q ss_pred C-----Cch--------------------------hhhhhhc-----------CCCeEEEeceeeeccC-------CCCc
Q 028525 74 E-----GFI--------------------------SNAGSLK-----------GVQHVILLSQLSVYRG-------SGGI 104 (208)
Q Consensus 74 ~-----~~~--------------------------~~a~~~~-----------gv~~~v~~Ss~~~~~~-------~~~~ 104 (208)
+ +.. ...+++. ...+++.+|+...... ..+.
T Consensus 90 G~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~ 169 (250)
T d1yo6a1 90 GVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPV 169 (250)
T ss_dssp CCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTTCCSTTSSSCB
T ss_pred cccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccccCCcccccchhH
Confidence 2 100 0112211 1236677766543321 1111
Q ss_pred ccccchhHH--HhHHHHHHHHHhcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCC
Q 028525 105 QALMKGNAR--KLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP--QTG 180 (208)
Q Consensus 105 ~~~~~~~~~--~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~ 180 (208)
..|..+++- .+.+.....++..++++..|.||++-..... ....++.++.++.++..+.++. ..|
T Consensus 170 ~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~~-----------~~~~~~~e~~a~~~~~~~~~~~~~~sG 238 (250)
T d1yo6a1 170 LAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGG-----------KNAALTVEQSTAELISSFNKLDNSHNG 238 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC------------------------HHHHHHHHHHHTTCCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCCC-----------CCCCCCHHHHHHHHHHHHhcCCCCCCe
Confidence 224443321 1112222334567999999999988432211 1234567888888888887654 346
Q ss_pred cEEE
Q 028525 181 LIFE 184 (208)
Q Consensus 181 ~~~~ 184 (208)
+.|+
T Consensus 239 ~f~~ 242 (250)
T d1yo6a1 239 RFFM 242 (250)
T ss_dssp CEEE
T ss_pred EEEC
Confidence 6554
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=98.85 E-value=1.2e-08 Score=76.25 Aligned_cols=189 Identities=8% Similarity=0.005 Sum_probs=106.1
Q ss_pred Cchhhhcc--ccC-----ccHHHHHHHHHhCCCcEEEEEcCchhh----hhhcCCceEEEEcCCCCHHHHHHHhc-----
Q 028525 1 MGPMKKMK--RKK-----MNFRMVILSLIVKRTRIKALVKDKRNA----MESFGTYVESMAGDASNKKFLKTALR----- 64 (208)
Q Consensus 1 ~~~~~~~~--~~G-----~iG~~l~~~Ll~~g~~V~~~~R~~~~~----~~~~~~~v~~v~~Dl~d~~~l~~~~~----- 64 (208)
+|+|+++. .|| -||++++++|++.|++|++..|+..+. .+..+.+...+++|+.+++++.++++
T Consensus 1 ~~~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~ 80 (268)
T d2h7ma1 1 TGLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEA 80 (268)
T ss_dssp CCTTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhc
Confidence 58896653 565 399999999999999999999987663 23344567889999999876655532
Q ss_pred -----CCCEEEEcCC--C-------chh----------------------hhh-hhcCCCeEEEeceeeeccCCCCcccc
Q 028525 65 -----GVRSIICPSE--G-------FIS----------------------NAG-SLKGVQHVILLSQLSVYRGSGGIQAL 107 (208)
Q Consensus 65 -----~~d~vi~~~~--~-------~~~----------------------~a~-~~~gv~~~v~~Ss~~~~~~~~~~~~~ 107 (208)
..|+++++.+ . .+. .+. ...+-..++.++|............|
T Consensus 81 ~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~p~~~~y 160 (268)
T d2h7ma1 81 IGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNWM 160 (268)
T ss_dssp HCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCCTTTHHH
T ss_pred cccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccccCcccchh
Confidence 2477776621 0 000 001 11112234444444433322223334
Q ss_pred cchhH--HHhHHHHHHHHHhcCCCEEEEeccccccCC-------CCc-ccee--------eecCCc-CCCcccHHHHHHH
Q 028525 108 MKGNA--RKLAEQDESMLMASGIPYTIIRTGVLQNTP-------GGK-QGFQ--------FEEGCA-ANGSLSKEDAAFI 168 (208)
Q Consensus 108 ~~~~~--~~~~~~~e~~l~~~~~~~tivRp~~~~~~~-------~~~-~~~~--------~~~~~~-~~~~v~~~Dva~~ 168 (208)
...+. ..+.+.....+...++++..|.||.+.... ... .... +....+ .......+|+|.+
T Consensus 161 ~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rr~~~p~dva~~ 240 (268)
T d2h7ma1 161 TVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKT 240 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCHHHHHH
T ss_pred hccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 33221 111122223344578999999999875321 000 0000 000011 1224567999999
Q ss_pred HHHHhhCCC--CCCcEEEEeeCC
Q 028525 169 CVEALESIP--QTGLIFEVVNGE 189 (208)
Q Consensus 169 ~~~~l~~~~--~~~~~~~i~~~~ 189 (208)
+..++.+.. -.|+++.+.+|-
T Consensus 241 v~fL~Sd~a~~iTG~~i~vDGG~ 263 (268)
T d2h7ma1 241 VCALLSDWLPATTGDIIYADGGA 263 (268)
T ss_dssp HHHHHSSSCTTCCSEEEEESTTG
T ss_pred HHHHhCchhcCccCCEEEECcCc
Confidence 999886433 246777776554
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=98.83 E-value=3.9e-08 Score=73.95 Aligned_cols=181 Identities=10% Similarity=-0.032 Sum_probs=102.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh-h-------hhhcCCceEE-----------------EEcCCCCHHHHHHH
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN-A-------MESFGTYVES-----------------MAGDASNKKFLKTA 62 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~-------~~~~~~~v~~-----------------v~~Dl~d~~~l~~~ 62 (208)
++++.||++++++|+++|++|.+..|+..+ . ....+..... ..+|+++.+++.++
T Consensus 9 Gas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~~~~v~~~ 88 (284)
T d1e7wa_ 9 GAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLFTRCAEL 88 (284)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCCHHHHHHH
Confidence 457789999999999999999998776543 1 1111223333 34568888888776
Q ss_pred h-------cCCCEEEEcCCCc----h-------------------------hh---------------------hhhhcC
Q 028525 63 L-------RGVRSIICPSEGF----I-------------------------SN---------------------AGSLKG 85 (208)
Q Consensus 63 ~-------~~~d~vi~~~~~~----~-------------------------~~---------------------a~~~~g 85 (208)
+ .+.|++|++++.. + .. .+.+.+
T Consensus 89 ~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (284)
T d1e7wa_ 89 VAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGT 168 (284)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCGGGSCS
T ss_pred HHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhhHHHhcCC
Confidence 5 3579999772210 0 00 011123
Q ss_pred CCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHHHHHhcCCCEEEEeccccccCCCCccce--eeecCCcC-CCcc
Q 028525 86 VQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGF--QFEEGCAA-NGSL 160 (208)
Q Consensus 86 v~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~--~~~~~~~~-~~~v 160 (208)
..+++.++|.....+......|...++- .+.+..-..+...|+++..|.||+........... .+....+. ....
T Consensus 169 ~~~ii~~~s~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~~~~~~~~~~~~~~~pl~~R~~ 248 (284)
T d1e7wa_ 169 NYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVDDMPPAVWEGHRSKVPLYQRDS 248 (284)
T ss_dssp CEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGGGSCHHHHHHHHTTCTTTTSCB
T ss_pred CCcccccccccccCCccceeeeccccccchhhhHHHHHHhCCccccccccccccccccccCCHHHHHHHHhcCCCCCCCC
Confidence 3467777776655443334455543321 11122223345679999999999742111111000 01111111 2344
Q ss_pred cHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 161 SKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 161 ~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
..+|+|.+++.++.+.. -.|+++.+.+|
T Consensus 249 ~peeiA~~v~fL~S~~s~~itG~~i~VDGG 278 (284)
T d1e7wa_ 249 SAAEVSDVVIFLCSSKAKYITGTCVKVDGG 278 (284)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHhCchhcCccCCeEEECcC
Confidence 67999999999886543 24788887754
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.82 E-value=1e-08 Score=75.30 Aligned_cols=175 Identities=13% Similarity=0.120 Sum_probs=105.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcC------CCEEEEcC----C---
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRG------VRSIICPS----E--- 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~------~d~vi~~~----~--- 74 (208)
++++.||++++++|+++|++|.+.+|+.+. .+...+++|+.+......+... .+.++... .
T Consensus 8 Gas~GIG~aiA~~la~~Ga~V~i~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (241)
T d1uaya_ 8 GGASGLGRAAALALKARGYRVVVLDLRREG------EDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGVGLAEKI 81 (241)
T ss_dssp TTTSHHHHHHHHHHHHHTCEEEEEESSCCS------SSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCCCCCCCCS
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCccc------ccceEeeccccchhhhHHHHHhhhccccccchhhhhhccccccc
Confidence 467889999999999999999999998654 2356778999987776666532 22333221 0
Q ss_pred -Cc-----------h---------------hhh------hhhcCCCeEEEeceeeeccCCCCcccccchhH--HHhHHHH
Q 028525 75 -GF-----------I---------------SNA------GSLKGVQHVILLSQLSVYRGSGGIQALMKGNA--RKLAEQD 119 (208)
Q Consensus 75 -~~-----------~---------------~~a------~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~--~~~~~~~ 119 (208)
+. . ... +.+.+-.++|++||.....+......|...++ ..+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~l 161 (241)
T d1uaya_ 82 LGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPA 161 (241)
T ss_dssp BCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCCCCchhhHHHHHHHHHHHHHH
Confidence 00 0 000 12234458999999877654444455655332 1111212
Q ss_pred HHHHHhcCCCEEEEeccccccCCCCc---c-ceeeecCCcC-CCcccHHHHHHHHHHHhhCCCCCCcEEEEeeC
Q 028525 120 ESMLMASGIPYTIIRTGVLQNTPGGK---Q-GFQFEEGCAA-NGSLSKEDAAFICVEALESIPQTGLIFEVVNG 188 (208)
Q Consensus 120 e~~l~~~~~~~tivRp~~~~~~~~~~---~-~~~~~~~~~~-~~~v~~~Dva~~~~~~l~~~~~~~~~~~i~~~ 188 (208)
-..+...|+++..|.||++....... . ...+...... ......+|+|.+++.++..+--.|+++.+.+|
T Consensus 162 A~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~R~g~pedvA~~v~fL~s~~~iTG~~i~VDGG 235 (241)
T d1uaya_ 162 ARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPFPPRLGRPEEYAALVLHILENPMLNGEVVRLDGA 235 (241)
T ss_dssp HHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCCSSCSCCCHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred HHHHhhcCCceeeecCCcccccccchhhhhHHHHHHhcCCCCCCCcCHHHHHHHHHHHHhCCCCCCCEEEECCc
Confidence 23344579999999999984321100 0 0001111111 23446799999999998854445788888755
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=4.6e-08 Score=73.20 Aligned_cols=165 Identities=11% Similarity=0.041 Sum_probs=100.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh-------hcCCceEEEEcCCCCHHHHHHHh-------cCCCEEEEcC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME-------SFGTYVESMAGDASNKKFLKTAL-------RGVRSIICPS 73 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~-------~~~~~v~~v~~Dl~d~~~l~~~~-------~~~d~vi~~~ 73 (208)
++++.||++++++|+++|++|++.+|+.++..+ .....+..+..|.++.+.+...+ ...|++++++
T Consensus 21 GassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~~~li~na 100 (269)
T d1xu9a_ 21 GASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNH 100 (269)
T ss_dssp SCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTSCSEEEECC
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhCCcccccccc
Confidence 458889999999999999999999999876322 22346778899999877766554 2468888662
Q ss_pred CC----c--------------------------hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHH--HhHHHHHH
Q 028525 74 EG----F--------------------------ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNAR--KLAEQDES 121 (208)
Q Consensus 74 ~~----~--------------------------~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~--~~~~~~e~ 121 (208)
+. . ....+++. -.++|++||.....+......|..+++- .+.+....
T Consensus 101 g~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~-~G~ii~isS~~~~~~~p~~~~Y~asKaal~~~~~~La~ 179 (269)
T d1xu9a_ 101 ITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS-NGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRK 179 (269)
T ss_dssp CCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEGGGTSCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc-CCcceEeccchhcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 21 0 01123333 3589999998876554444556554321 11111111
Q ss_pred HHH--hcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC
Q 028525 122 MLM--ASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 122 ~l~--~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~ 177 (208)
.+. ..+++++.|.||.+-. +...+. . .+.......+.+++|+.++..+...+
T Consensus 180 El~~~~~~I~V~~v~PG~v~T-~~~~~~--~-~~~~~~~~~~~e~~a~~i~~~~~~~~ 233 (269)
T d1xu9a_ 180 EYSVSRVNVSITLCVLGLIDT-ETAMKA--V-SGIVHMQAAPKEECALEIIKGGALRQ 233 (269)
T ss_dssp HHHHHTCCCEEEEEEECCBCC-HHHHHH--S-CGGGGGGCBCHHHHHHHHHHHHHTTC
T ss_pred HhhhcCCCEEEEEEecCcCCC-cHHHHh--c-cCCccccCCCHHHHHHHHHHHhhcCC
Confidence 122 3468899999998742 211110 0 11112234577999999888765443
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=2.7e-08 Score=74.76 Aligned_cols=65 Identities=9% Similarity=0.002 Sum_probs=52.4
Q ss_pred cccCccHHHHHHHHHhC-CCcEEEEEcCchhhhh------hcCCceEEEEcCCCCHHHHHHHhc-------CCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVK-RTRIKALVKDKRNAME------SFGTYVESMAGDASNKKFLKTALR-------GVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~-g~~V~~~~R~~~~~~~------~~~~~v~~v~~Dl~d~~~l~~~~~-------~~d~vi~~ 72 (208)
++++-||.+++++|+++ |++|++.+|+.++..+ ..+.++.++.+|++|.+++.++++ ..|++|++
T Consensus 10 Gas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~iDiLVnN 88 (275)
T d1wmaa1 10 GGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNN 88 (275)
T ss_dssp SCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 46888999999999986 8999999999876321 124578999999999999877653 46999976
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.74 E-value=6.5e-09 Score=76.42 Aligned_cols=169 Identities=8% Similarity=0.019 Sum_probs=99.1
Q ss_pred hccccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHH-------hc--CCCEEEEcCCC-
Q 028525 6 KMKRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTA-------LR--GVRSIICPSEG- 75 (208)
Q Consensus 6 ~~~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-------~~--~~d~vi~~~~~- 75 (208)
.-+.++.||++++++|+++|++|++++|++.... .....+.+|..+.+..... ++ ..|++|++++.
T Consensus 7 ITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~linnAG~~ 82 (235)
T d1ooea_ 7 VYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGW 82 (235)
T ss_dssp EETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCCC
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc----cccceeccccCchhHHHHHHHHHHHHhcCCCeeEEEECCccc
Confidence 3467999999999999999999999999875422 1233445666554443322 22 35999977331
Q ss_pred ---ch---------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHH-
Q 028525 76 ---FI---------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLM- 124 (208)
Q Consensus 76 ---~~---------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~- 124 (208)
.. ...+++. .++|++||.....+.....+|..+++ .....-+.|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~--g~Iv~isS~~~~~~~~~~~~Y~asKa--al~~l~~~la~ 158 (235)
T d1ooea_ 83 AGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG--GLLQLTGAAAAMGPTPSMIGYGMAKA--AVHHLTSSLAA 158 (235)
T ss_dssp CCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE--EEEEEECCGGGGSCCTTBHHHHHHHH--HHHHHHHHHHS
T ss_pred ccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccc--eEEEEeccHHhcCCcccccchHHHHH--HHHHHHHHHHH
Confidence 10 0112222 48999999887765555556655332 1111112222
Q ss_pred h-----cCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC---CCCcEEEEe
Q 028525 125 A-----SGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP---QTGLIFEVV 186 (208)
Q Consensus 125 ~-----~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~---~~~~~~~i~ 186 (208)
+ .++++..|.||++.. +.... . + .......+++.+|+++.++..+..+. ..|..+.+.
T Consensus 159 e~~~~~~~i~v~~i~Pg~~~T-~~~~~-~-~-~~~~~~~~~~~~~va~~~~~~l~~~~~~~~tG~~i~v~ 224 (235)
T d1ooea_ 159 KDSGLPDNSAVLTIMPVTLDT-PMNRK-W-M-PNADHSSWTPLSFISEHLLKWTTETSSRPSSGALLKIT 224 (235)
T ss_dssp TTSSCCTTCEEEEEEESCBCC-HHHHH-H-S-TTCCGGGCBCHHHHHHHHHHHHHCGGGCCCTTCEEEEE
T ss_pred HhccCCCceEEEEEecCcCcC-cchhh-h-C-cCCccccCCCHHHHHHHHHHHhcCccccCCCceEEEEE
Confidence 1 366788899998742 21111 1 1 11122456788999999887665543 246666663
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.73 E-value=4.1e-07 Score=67.46 Aligned_cols=181 Identities=13% Similarity=0.034 Sum_probs=99.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh--------hhcCCceEEEEcCCCC----HHHHHH-------HhcCCCE
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM--------ESFGTYVESMAGDASN----KKFLKT-------ALRGVRS 68 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~--------~~~~~~v~~v~~Dl~d----~~~l~~-------~~~~~d~ 68 (208)
+.++-||++++++|+++|++|++..|+.++.. ...+.....+..|..+ .+.+.+ .+.+.|+
T Consensus 8 Gas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iDi 87 (266)
T d1mxha_ 8 GGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDV 87 (266)
T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHHhCCCCE
Confidence 46788999999999999999999999876521 1123456666666544 333323 2346899
Q ss_pred EEEcCC----Cch--------------hh-----------------------hhh-----hcCCCeEEEeceeeeccCCC
Q 028525 69 IICPSE----GFI--------------SN-----------------------AGS-----LKGVQHVILLSQLSVYRGSG 102 (208)
Q Consensus 69 vi~~~~----~~~--------------~~-----------------------a~~-----~~gv~~~v~~Ss~~~~~~~~ 102 (208)
+|++++ ... .+ .+. ......++.+|+........
T Consensus 88 lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (266)
T d1mxha_ 88 LVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLP 167 (266)
T ss_dssp EEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGGGGSCCT
T ss_pred EEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhccccccCc
Confidence 997622 100 00 000 01223455556555444333
Q ss_pred CcccccchhH--HHhHHHHHHHHHhcCCCEEEEeccccccCCCCcccee--eecCCcC-CCcccHHHHHHHHHHHhhCCC
Q 028525 103 GIQALMKGNA--RKLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQ--FEEGCAA-NGSLSKEDAAFICVEALESIP 177 (208)
Q Consensus 103 ~~~~~~~~~~--~~~~~~~e~~l~~~~~~~tivRp~~~~~~~~~~~~~~--~~~~~~~-~~~v~~~Dva~~~~~~l~~~~ 177 (208)
....|..+++ ..+.+..-..+...|+++..|.||.+........... +....+. ....+.+|+|.+++.++.+..
T Consensus 168 ~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~pl~r~~~~peeva~~v~fL~s~~s 247 (266)
T d1mxha_ 168 GFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMPQETQEEYRRKVPLGQSEASAAQIADAIAFLVSKDA 247 (266)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSCHHHHHHHHTTCTTTSCCBCHHHHHHHHHHHHSGGG
T ss_pred chhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCCHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCchh
Confidence 3344443321 1111112233445799999999998743222111110 1111111 223478999999999987554
Q ss_pred --CCCcEEEEeeC
Q 028525 178 --QTGLIFEVVNG 188 (208)
Q Consensus 178 --~~~~~~~i~~~ 188 (208)
..|+++.+.+|
T Consensus 248 ~~itG~~i~vDGG 260 (266)
T d1mxha_ 248 GYITGTTLKVDGG 260 (266)
T ss_dssp TTCCSCEEEESTT
T ss_pred CCccCCeEEECcc
Confidence 35778887754
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.65 E-value=5.3e-08 Score=71.46 Aligned_cols=167 Identities=11% Similarity=0.039 Sum_probs=97.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHH-------hc--CCCEEEEcCCCc--
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTA-------LR--GVRSIICPSEGF-- 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-------~~--~~d~vi~~~~~~-- 76 (208)
+.+|.||+++++.|+++|++|.+++|+..+.. .....+..|..+.++.... +. ..|++|++++..
T Consensus 9 Gas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~lInnAG~~~~ 84 (236)
T d1dhra_ 9 GGRGALGSRCVQAFRARNWWVASIDVVENEEA----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAG 84 (236)
T ss_dssp TTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCccccc----cccceeecccCcHHHHHHHHHHHHHHhCCCCceEEEECCccccc
Confidence 46889999999999999999999988764422 1223344555444433322 22 369999773311
Q ss_pred --h---------------------------hhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHH---
Q 028525 77 --I---------------------------SNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLM--- 124 (208)
Q Consensus 77 --~---------------------------~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~--- 124 (208)
. ...+++. .++|++||.....+......|..+++ .....-+.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~--G~Iv~isS~~~~~~~~~~~~Y~asKa--al~~lt~~la~El 160 (236)
T d1dhra_ 85 GNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG--GLLTLAGAKAALDGTPGMIGYGMAKG--AVHQLCQSLAGKN 160 (236)
T ss_dssp BCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE--EEEEEECCGGGGSCCTTBHHHHHHHH--HHHHHHHHHTSTT
T ss_pred ccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccc--cceeEEccHHHcCCccCCcccHHHHH--HHHHHHHHHHHHh
Confidence 0 0112222 48999999887654444445555332 1111112222
Q ss_pred ---hcCCCEEEEeccccccCCCCccceeeecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEe
Q 028525 125 ---ASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVV 186 (208)
Q Consensus 125 ---~~~~~~tivRp~~~~~~~~~~~~~~~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~ 186 (208)
..++++..|.||++..... .. .........+.+.+|+|..+..++.... ..|..+.+.
T Consensus 161 ~~~~~gI~vn~v~PG~v~T~~~-~~---~~~~~~~~~~~~pe~va~~~~~l~s~~~~~i~G~~i~v~ 223 (236)
T d1dhra_ 161 SGMPSGAAAIAVLPVTLDTPMN-RK---SMPEADFSSWTPLEFLVETFHDWITGNKRPNSGSLIQVV 223 (236)
T ss_dssp SSCCTTCEEEEEEESCEECHHH-HH---HSTTSCGGGSEEHHHHHHHHHHHHTTTTCCCTTCEEEEE
T ss_pred ccCCCcEEEEEEEeccCcCCcc-hh---hCccchhhcCCCHHHHHHHHHHHhCCCccCCCCCeEEEE
Confidence 2479999999999843211 10 1011112456778999999999887554 246666553
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.60 E-value=1.2e-07 Score=63.24 Aligned_cols=83 Identities=7% Similarity=-0.039 Sum_probs=66.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCCc------hhhh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTA-LRGVRSIICPSEGF------ISNA 80 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~~------~~~a 80 (208)
.+-|.+|+++++.|.++|++|++++.+++...+....+..++.+|.+|++.+.++ +..+|.||.+.+.. ....
T Consensus 6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~~~~~~ 85 (134)
T d2hmva1 6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQASTLTTLL 85 (134)
T ss_dssp ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHHHHHHH
Confidence 3679999999999999999999999999887766666788999999999999888 67899999874432 1223
Q ss_pred hhhcCCCeEE
Q 028525 81 GSLKGVQHVI 90 (208)
Q Consensus 81 ~~~~gv~~~v 90 (208)
++..+..+++
T Consensus 86 ~~~~~~~~ii 95 (134)
T d2hmva1 86 LKELDIPNIW 95 (134)
T ss_dssp HHHTTCSEEE
T ss_pred HHHcCCCcEE
Confidence 4556766654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.57 E-value=8.8e-08 Score=63.83 Aligned_cols=87 Identities=18% Similarity=0.060 Sum_probs=66.4
Q ss_pred hhhc-cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC-CceEEEEcCCCCHHHHHHH-hcCCCEEEEcCCCc----
Q 028525 4 MKKM-KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG-TYVESMAGDASNKKFLKTA-LRGVRSIICPSEGF---- 76 (208)
Q Consensus 4 ~~~~-~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~-~~~~d~vi~~~~~~---- 76 (208)
|+.. .+-|.+|+.+++.|.+.||+|+++++++++...... .++.++.||.+|++.+.++ ++.+|+++.+++..
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~N~ 80 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVNL 80 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHHHH
Confidence 4443 257999999999999999999999999987543322 2678999999999999988 57889999874432
Q ss_pred -hhhhhhhcCCCeEE
Q 028525 77 -ISNAGSLKGVQHVI 90 (208)
Q Consensus 77 -~~~a~~~~gv~~~v 90 (208)
....++..+.+++|
T Consensus 81 ~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 81 MSSLLAKSYGINKTI 95 (132)
T ss_dssp HHHHHHHHTTCCCEE
T ss_pred HHHHHHHHcCCceEE
Confidence 22345667777665
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.36 E-value=2.2e-07 Score=65.89 Aligned_cols=65 Identities=9% Similarity=-0.010 Sum_probs=55.0
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---c--CCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---F--GTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~--~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
++|.||+.+++.|+++|++|+++.|+.++..+. . ..++.+..+|+.|.+++.+++.++|+||+++
T Consensus 31 asgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin~A 100 (191)
T d1luaa1 31 GTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAG 100 (191)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECC
T ss_pred CCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeeecC
Confidence 599999999999999999999999998774221 1 1246778899999999999999999999874
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=98.31 E-value=1.5e-05 Score=58.52 Aligned_cols=58 Identities=14% Similarity=0.029 Sum_probs=41.2
Q ss_pred hhhcc---ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHh--------cCCCEEEEc
Q 028525 4 MKKMK---RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTAL--------RGVRSIICP 72 (208)
Q Consensus 4 ~~~~~---~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~--------~~~d~vi~~ 72 (208)
||+.. +++.||++++++|+++|++|.+.+|+..+. ..|+.+.+...... ...|+++++
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~-----------~~d~~~~~~~~~~~~~~~~~~~~~id~lv~~ 69 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV-----------IADLSTAEGRKQAIADVLAKCSKGMDGLVLC 69 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE-----------ECCTTSHHHHHHHHHHHHTTCTTCCSEEEEC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHH-----------HHHhcCHHHHHHHHHHHHHHhCCCCcEEEEc
Confidence 66764 466799999999999999999999875432 34666554444332 236888866
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=97.92 E-value=6.1e-05 Score=56.31 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=39.5
Q ss_pred HhcCCCEEEEeccccccCCCCccce--e----eecCCcCCCcccHHHHHHHHHHHhhCCC--CCCcEEEEeeC
Q 028525 124 MASGIPYTIIRTGVLQNTPGGKQGF--Q----FEEGCAANGSLSKEDAAFICVEALESIP--QTGLIFEVVNG 188 (208)
Q Consensus 124 ~~~~~~~tivRp~~~~~~~~~~~~~--~----~~~~~~~~~~v~~~Dva~~~~~~l~~~~--~~~~~~~i~~~ 188 (208)
...++++..|.||++.......... . .....+.......+|||.+++.++.+.. -.|+++.+.+|
T Consensus 212 ~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~PlgR~~~peevA~~v~fL~S~~a~~itGq~i~vDGG 284 (297)
T d1d7oa_ 212 RKQNIRVNTISAGPLGSRAAKAIGFIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATIYVDNG 284 (297)
T ss_dssp HHHCCEEEEEEECCCBCCCSSCCSHHHHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ccceEEecccccccccchhhhhccCCHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCchhcCCcCceEEECcC
Confidence 3569999999999985433221100 0 0000112334567999999999986543 24788877654
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=5.3e-05 Score=51.10 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=55.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchh----hhhhcCCceEEEEcCCCCHHHHHHHh-cCCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRN----AMESFGTYVESMAGDASNKKFLKTAL-RGVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~----~~~~~~~~v~~v~~Dl~d~~~l~~~~-~~~d~vi~~~~~ 75 (208)
+-|.+|..+++.|.++|++|+++..++++ .......++.++.||.+|++.+.++- +.+++||.+++.
T Consensus 10 G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~ 81 (153)
T d1id1a_ 10 GHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN 81 (153)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcccc
Confidence 56899999999999999999999988764 23334568999999999999988774 578999987543
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.77 E-value=6.7e-05 Score=51.53 Aligned_cols=68 Identities=9% Similarity=-0.007 Sum_probs=54.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC--CceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG--TYVESMAGDASNKKFLKTALRGVRSIICPSEG 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~--~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~ 75 (208)
.+.|.+|+.+++.|.++||+|+++.|+.+++..... ........+..+.......+...|.++.+.+.
T Consensus 8 iGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~ 77 (182)
T d1e5qa1 8 LGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPY 77 (182)
T ss_dssp ECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCG
T ss_pred ECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccc
Confidence 368999999999999999999999999988654322 24555667777888888888889999877443
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.64 E-value=0.00014 Score=55.31 Aligned_cols=25 Identities=8% Similarity=-0.225 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHhCCCcEEEEEcCch
Q 028525 12 MNFRMVILSLIVKRTRIKALVKDKR 36 (208)
Q Consensus 12 ~iG~~l~~~Ll~~g~~V~~~~R~~~ 36 (208)
-||+++++.|.+.|.+|.+..|+..
T Consensus 15 GIG~aiA~~la~~GA~V~i~~~~~~ 39 (329)
T d1uh5a_ 15 GYGWGIAKELSKRNVKIIFGIWPPV 39 (329)
T ss_dssp SHHHHHHHHHHHTTCEEEEEECGGG
T ss_pred hHHHHHHHHHHHcCCEEEEEeCchh
Confidence 6999999999999999999877643
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.54 E-value=3.3e-05 Score=52.67 Aligned_cols=60 Identities=10% Similarity=-0.016 Sum_probs=45.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.+++.|+++||+|++++|++++...+...+.... .+ ..++++++|+||.|.+
T Consensus 6 IGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~----~~---~~e~~~~~d~ii~~v~ 65 (161)
T d1vpda2 6 IGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETA----ST---AKAIAEQCDVIITMLP 65 (161)
T ss_dssp ECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC----SS---HHHHHHHCSEEEECCS
T ss_pred EehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhc----cc---HHHHHhCCCeEEEEcC
Confidence 469999999999999999999999999988655443334321 23 3456778999998843
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.51 E-value=5e-05 Score=51.80 Aligned_cols=58 Identities=7% Similarity=-0.054 Sum_probs=43.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|..|+.+++.|+++||+|++++|++++.......+.... .+..+++..+|+++.+
T Consensus 7 IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~-------~~~~e~~~~~diii~~ 64 (162)
T d3cuma2 7 IGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAA-------RSARDAVQGADVVISM 64 (162)
T ss_dssp ECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEEC-------SSHHHHHTSCSEEEEC
T ss_pred EEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhcccc-------chhhhhccccCeeeec
Confidence 379999999999999999999999999887544332222211 2234678889999987
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.36 E-value=6.8e-05 Score=51.17 Aligned_cols=60 Identities=7% Similarity=0.009 Sum_probs=42.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCc-eEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTY-VESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~-v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.+++.|.++||+|++++|+++........+ +....- +. ++++++|+||++.+
T Consensus 6 IG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~---~~----~~~~~~DiIilavp 66 (165)
T d2f1ka2 6 VGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQ---DL----SLLQTAKIIFLCTP 66 (165)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEES---CG----GGGTTCSEEEECSC
T ss_pred EeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeee---ec----ccccccccccccCc
Confidence 37999999999999999999999999977643322222 222211 11 36789999998854
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.00018 Score=48.07 Aligned_cols=87 Identities=18% Similarity=0.118 Sum_probs=50.2
Q ss_pred hccccCccHHHHHHHHHhCC----CcEEEEEcCchhhh--hhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc---
Q 028525 6 KMKRKKMNFRMVILSLIVKR----TRIKALVKDKRNAM--ESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF--- 76 (208)
Q Consensus 6 ~~~~~G~iG~~l~~~Ll~~g----~~V~~~~R~~~~~~--~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~--- 76 (208)
..+.||.+|+.+++.|++.. .+++.+.++.+.-. ..... .....++.+.+ .+.++|++|+|.+..
T Consensus 6 IvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~--~~~~~~~~~~~----~~~~~DivF~a~~~~~s~ 79 (146)
T d1t4ba1 6 FIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQDAFDLE----ALKALDIIVTCQGGDYTN 79 (146)
T ss_dssp EESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTC--CCBCEETTCHH----HHHTCSEEEECSCHHHHH
T ss_pred EECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCC--ceeeecccchh----hhhcCcEEEEecCchHHH
Confidence 34679999999999888763 35666665544311 11111 12223344433 467899999986543
Q ss_pred -hhhhhhhcCCCeEEEeceeeecc
Q 028525 77 -ISNAGSLKGVQHVILLSQLSVYR 99 (208)
Q Consensus 77 -~~~a~~~~gv~~~v~~Ss~~~~~ 99 (208)
....+..+|.+-+ .++..+.++
T Consensus 80 ~~~~~~~~~g~~~~-VID~Ss~fR 102 (146)
T d1t4ba1 80 EIYPKLRESGWQGY-WIDAASSLR 102 (146)
T ss_dssp HHHHHHHHTTCCCE-EEECSSTTT
T ss_pred HhhHHHHhcCCCee-cccCCcccc
Confidence 3344556676533 344445555
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.28 E-value=0.00035 Score=48.07 Aligned_cols=68 Identities=12% Similarity=-0.056 Sum_probs=46.2
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC--------CceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG--------TYVESMAGDASNKKFLKTALRGVRSIICPSEG 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~--------~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~ 75 (208)
.+.|.+|..++..|.++||+|.+++|++++...... ...+..........++.++++++|+||++.+.
T Consensus 7 iGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v~~ 82 (184)
T d1bg6a2 7 LGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVPA 82 (184)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSCG
T ss_pred ECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEEch
Confidence 368999999999999999999999999876432211 11122222221123456789999999998543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=97.25 E-value=0.00017 Score=47.04 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=52.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHh-cCCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTAL-RGVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~-~~~d~vi~~~~~ 75 (208)
+-|.+|+.+++.| ++++|.++..+++........++.++.||.+|++.+.++- ..++.+|.+++.
T Consensus 7 G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~ 72 (129)
T d2fy8a1 7 GWSESTLECLREL--RGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLES 72 (129)
T ss_dssp SCCHHHHHHHHTS--CGGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSS
T ss_pred CCCHHHHHHHHHH--cCCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccc
Confidence 4688999999998 4678999998888765555567999999999999988874 568999987543
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.24 E-value=0.00011 Score=49.46 Aligned_cols=60 Identities=5% Similarity=-0.061 Sum_probs=43.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.+.|.+|+.+++.|+++||+|++..|++++.......++.+.. +..++++.+|+||+|.+
T Consensus 6 IG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-------~~~e~~~~~diIi~~v~ 65 (152)
T d1i36a2 6 IGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTE-------TSEEDVYSCPVVISAVT 65 (152)
T ss_dssp ESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEE-------CCHHHHHTSSEEEECSC
T ss_pred EcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccc-------cHHHHHhhcCeEEEEec
Confidence 4799999999999999999999999887664433322333221 12457888999998833
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.0011 Score=41.92 Aligned_cols=77 Identities=8% Similarity=-0.095 Sum_probs=56.5
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEc---CCCchhhhhh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICP---SEGFISNAGS 82 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~---~~~~~~~a~~ 82 (208)
.+.|++|+-++.+..+.|+++++++.++........ -..+.+|++|.+.+.+... ++|+|-+= .+....+.++
T Consensus 17 lGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~va--~~~i~~~~~d~~~l~~~~~~~~~DviT~E~EnI~~~~L~~le 94 (111)
T d1kjqa2 17 LGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVA--HRSHVINMLDGDALRRVVELEKPHYIVPEIEAIATDMLIQLE 94 (111)
T ss_dssp ESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGS--SEEEECCTTCHHHHHHHHHHHCCSEEEECSSCSCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHCCCEEEEEcCCCCCchhhcC--CeEEECCCCCHHHHHHHHHhhCCceEEEEecCcCHHHHHHHH
Confidence 479999999999999999999999987665332222 2677899999999988774 57988754 2222444555
Q ss_pred hcCC
Q 028525 83 LKGV 86 (208)
Q Consensus 83 ~~gv 86 (208)
+.|+
T Consensus 95 ~~g~ 98 (111)
T d1kjqa2 95 EEGL 98 (111)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 5554
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=97.02 E-value=0.00019 Score=49.46 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=48.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCce--EEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYV--ESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v--~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|..|+.+++.|++.||+|++++|++++..++...+. .... -....+++.+++..+|.++.+
T Consensus 8 IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~ii~~ 73 (176)
T d2pgda2 8 IGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVL-GAHSLEEMVSKLKKPRRIILL 73 (176)
T ss_dssp ECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCE-ECSSHHHHHHHBCSSCEEEEC
T ss_pred EeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhcccccccc-chhhhhhhhhhhcccceEEEe
Confidence 368999999999999999999999999988654422111 1111 134678888899999999977
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.02 E-value=0.0002 Score=48.12 Aligned_cols=69 Identities=7% Similarity=-0.088 Sum_probs=48.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCC-ceEEEEcCCCCHHHHHHHhcCCCEEEEc-CCCchhhhhhh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGT-YVESMAGDASNKKFLKTALRGVRSIICP-SEGFISNAGSL 83 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~~~~~~~a~~~ 83 (208)
.+.|.+|+++++.|++.||+|++..|+.++..++... ++.+. .+ ..++++++|+||+| .|....+.++.
T Consensus 6 IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~----~~---~~~~~~~~dvIilavkp~~~~~vl~~ 76 (152)
T d2ahra2 6 IGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYA----MS---HQDLIDQVDLVILGIKPQLFETVLKP 76 (152)
T ss_dssp ECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBC----SS---HHHHHHTCSEEEECSCGGGHHHHHTT
T ss_pred EeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeee----ch---hhhhhhccceeeeecchHhHHHHhhh
Confidence 3799999999999999999999999998775433211 22221 22 34567889999988 45444444444
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.90 E-value=0.0021 Score=39.41 Aligned_cols=73 Identities=8% Similarity=-0.053 Sum_probs=48.4
Q ss_pred ccCccH-HHHHHHHHhCCCcEEEEEcCchhh-hhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc--CC--Cchhhhhh
Q 028525 9 RKKMNF-RMVILSLIVKRTRIKALVKDKRNA-MESFGTYVESMAGDASNKKFLKTALRGVRSIICP--SE--GFISNAGS 82 (208)
Q Consensus 9 ~~G~iG-~~l~~~Ll~~g~~V~~~~R~~~~~-~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~--~~--~~~~~a~~ 82 (208)
+-|.+| +.|++.|.++||+|.+-++..+.. ..+...++.+..++-. + .+.+.|.||+. .+ ......|+
T Consensus 15 GigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~--~----~i~~~d~vV~S~AI~~~npel~~A~ 88 (96)
T d1p3da1 15 GIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAE--E----HIEGASVVVVSSAIKDDNPELVTSK 88 (96)
T ss_dssp TTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCG--G----GGTTCSEEEECTTSCTTCHHHHHHH
T ss_pred EECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCcc--c----cCCCCCEEEECCCcCCCCHHHHHHH
Confidence 355555 778999999999999999876653 3333456777665443 2 34678988865 22 23455677
Q ss_pred hcCCC
Q 028525 83 LKGVQ 87 (208)
Q Consensus 83 ~~gv~ 87 (208)
+.|++
T Consensus 89 ~~gip 93 (96)
T d1p3da1 89 QKRIP 93 (96)
T ss_dssp HTTCC
T ss_pred HcCCC
Confidence 77775
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.81 E-value=0.00032 Score=48.53 Aligned_cols=31 Identities=13% Similarity=-0.052 Sum_probs=28.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA 38 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~ 38 (208)
+++|.+|+++++.|++.||+|++..|++++.
T Consensus 7 gGaG~iG~alA~~la~~G~~V~l~~R~~e~~ 37 (212)
T d1jaya_ 7 GGTGNLGKGLALRLATLGHEIVVGSRREEKA 37 (212)
T ss_dssp TTTSHHHHHHHHHHHTTTCEEEEEESSHHHH
T ss_pred eCCcHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 4689999999999999999999999998874
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.73 E-value=6.7e-05 Score=51.04 Aligned_cols=64 Identities=6% Similarity=-0.046 Sum_probs=42.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc--CC--ceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF--GT--YVESMAGDASNKKFLKTALRGVRSIICPSEG 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~--~~--~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~ 75 (208)
.+.|.+|+.++..|.+.||+|+.+.|++.+..... .. ..........+. +.+..+|+||++...
T Consensus 6 iGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~D~iii~vka 73 (167)
T d1ks9a2 6 LGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDP----DFLATSDLLLVTLKA 73 (167)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCH----HHHHTCSEEEECSCG
T ss_pred ECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchh----hhhcccceEEEeecc
Confidence 36899999999999999999999999887632211 11 111111222233 345689999988443
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=96.51 E-value=0.00095 Score=44.61 Aligned_cols=66 Identities=14% Similarity=-0.049 Sum_probs=45.1
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEEcCchhhhhhcC-CceEEEEcCCCCHHHHHHHhcCCCEEEEcC-CCchhhhh
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALVKDKRNAMESFG-TYVESMAGDASNKKFLKTALRGVRSIICPS-EGFISNAG 81 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~-~~~~~~a~ 81 (208)
.+.|.+|+++++.|++.| |+|.+.+|++++...+.. .++... -|.. .+..+|+||++. |....+.+
T Consensus 6 IG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~-~~~~-------~v~~~Div~lavkP~~~~~v~ 74 (152)
T d1yqga2 6 LGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETS-ATLP-------ELHSDDVLILAVKPQDMEAAC 74 (152)
T ss_dssp ECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEE-SSCC-------CCCTTSEEEECSCHHHHHHHH
T ss_pred EcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccc-cccc-------cccccceEEEecCHHHHHHhH
Confidence 378999999999999887 999999999887544322 234433 2322 256789999883 43333433
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.48 E-value=0.0017 Score=45.47 Aligned_cols=65 Identities=6% Similarity=-0.186 Sum_probs=44.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCC-------------CCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDA-------------SNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl-------------~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|++|..++..|++.||+|++++.+..+...+......+.+.++ .-..++.++++.+|++|.|
T Consensus 6 iGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i~i~ 83 (202)
T d1mv8a2 6 FGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFIC 83 (202)
T ss_dssp ECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEEEC
T ss_pred ECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEEEEe
Confidence 4799999999999999999999999887765443221111111111 1123345678889999988
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.46 E-value=0.0011 Score=44.82 Aligned_cols=60 Identities=13% Similarity=0.012 Sum_probs=45.3
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCchhhhhhcCC-ceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDKRNAMESFGT-YVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
++|.+|+.+++.|...|. ++++..|+.+++.++... +.+++ +.+++.+.+..+|+||.|+
T Consensus 31 GaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~-----~~~~~~~~l~~~Divi~at 92 (159)
T d1gpja2 31 GAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAV-----RFDELVDHLARSDVVVSAT 92 (159)
T ss_dssp SCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEEC-----CGGGHHHHHHTCSEEEECC
T ss_pred CCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccc-----cchhHHHHhccCCEEEEec
Confidence 689999999999999996 699999998775443211 23322 3456778899999999883
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0043 Score=37.57 Aligned_cols=74 Identities=9% Similarity=0.074 Sum_probs=51.0
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchh-hhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC----CCchhhhhhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRN-AMESFGTYVESMAGDASNKKFLKTALRGVRSIICPS----EGFISNAGSL 83 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~----~~~~~~a~~~ 83 (208)
+-|..|..+++.|.++|++|++.+.+... ........+.++.+... . ..+.++|.||... .......+++
T Consensus 12 GlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~d~vi~SPGi~~~~~~~~~a~~ 86 (93)
T d2jfga1 12 GLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLN-D----EWLMAADLIVASPGIALAHPSLSAAAD 86 (93)
T ss_dssp CCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCC-H----HHHHHCSEEEECTTSCTTSHHHHHHHH
T ss_pred eECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccc-h----hhhccCCEEEECCCCCCCCHHHHHHHH
Confidence 56888999999999999999999986553 23333445666666643 2 2356789999762 1235566777
Q ss_pred cCCC
Q 028525 84 KGVQ 87 (208)
Q Consensus 84 ~gv~ 87 (208)
.|++
T Consensus 87 ~gi~ 90 (93)
T d2jfga1 87 AGIE 90 (93)
T ss_dssp TTCE
T ss_pred cCCC
Confidence 7774
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.41 E-value=0.0032 Score=41.73 Aligned_cols=82 Identities=15% Similarity=0.064 Sum_probs=45.7
Q ss_pred ccccCccHHHHHHHHHhCC-C---cEEEEEcCchh--hhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc----
Q 028525 7 MKRKKMNFRMVILSLIVKR-T---RIKALVKDKRN--AMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF---- 76 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g-~---~V~~~~R~~~~--~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~---- 76 (208)
.+.||++|+.|++.|++.. | ++..++.+.+. ....... .....+..|. ..++++|+||+|.+..
T Consensus 6 iGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~--~~~~~~~~~~----~~~~~~DvvF~alp~~~s~~ 79 (147)
T d1mb4a1 6 VGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKD--AGMLHDAFDI----ESLKQLDAVITCQGGSYTEK 79 (147)
T ss_dssp ESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSC--CCBCEETTCH----HHHTTCSEEEECSCHHHHHH
T ss_pred ECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCc--ceeeecccch----hhhccccEEEEecCchHHHH
Confidence 3579999999999988753 3 45544433221 1111111 1111233343 3468899999996543
Q ss_pred hhhhhhhcCCC-eEEEece
Q 028525 77 ISNAGSLKGVQ-HVILLSQ 94 (208)
Q Consensus 77 ~~~a~~~~gv~-~~v~~Ss 94 (208)
......++|.+ .+|=.|+
T Consensus 80 ~~~~l~~~g~~~~VIDlSs 98 (147)
T d1mb4a1 80 VYPALRQAGWKGYWIDAAS 98 (147)
T ss_dssp HHHHHHHTTCCSEEEESSS
T ss_pred HhHHHHHcCCceEEEeCCc
Confidence 33445567775 4554554
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.21 E-value=0.0038 Score=42.39 Aligned_cols=85 Identities=7% Similarity=-0.051 Sum_probs=52.8
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCchhhhhhhcC-CC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGFISNAGSLKG-VQ 87 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~~~~a~~~~g-v~ 87 (208)
.+|.+|...++.+...|.+|++.++++++......-+.+.+ .|+.+...-...-.++|+||.+.+..+..+.+... -.
T Consensus 36 a~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~-i~~~~~~~~~~~~~g~D~v~d~~G~~~~~~~~~l~~~G 114 (171)
T d1iz0a2 36 AAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEA-ATYAEVPERAKAWGGLDLVLEVRGKEVEESLGLLAHGG 114 (171)
T ss_dssp TTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEE-EEGGGHHHHHHHTTSEEEEEECSCTTHHHHHTTEEEEE
T ss_pred ccccchhhhhhhhccccccccccccccccccccccccccee-eehhhhhhhhhccccccccccccchhHHHHHHHHhcCC
Confidence 48999999999988899999999998876433322234333 25555433334456799999876544433332211 13
Q ss_pred eEEEece
Q 028525 88 HVILLSQ 94 (208)
Q Consensus 88 ~~v~~Ss 94 (208)
+++.++.
T Consensus 115 ~~v~~G~ 121 (171)
T d1iz0a2 115 RLVYIGA 121 (171)
T ss_dssp EEEEC--
T ss_pred cEEEEeC
Confidence 6777654
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.12 E-value=0.012 Score=38.86 Aligned_cols=57 Identities=7% Similarity=0.034 Sum_probs=41.4
Q ss_pred ccCccHHHHHHHHHhCC--CcEEEEEcCchhhh----h-----hcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR--TRIKALVKDKRNAM----E-----SFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~----~-----~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|++|+.++..|+.+| .+|..+++++.+.. + .......+..+|+. .++++|+||.+
T Consensus 12 GaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-------~~~~adivvit 79 (146)
T d1ez4a1 12 GDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-------DCKDADLVVIT 79 (146)
T ss_dssp CCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-------GGTTCSEEEEC
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-------HhccccEEEEe
Confidence 68999999999999987 68999998875421 1 11223455556542 47899999987
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=96.00 E-value=0.00039 Score=46.51 Aligned_cols=69 Identities=10% Similarity=-0.029 Sum_probs=38.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc-CCCchhhhhhh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP-SEGFISNAGSL 83 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~~~~~~~a~~~ 83 (208)
.++|.+|+++++.|.+.++.+.++.|++++...+...... ...+.. ++++.+|+||+| .+..+.+.+..
T Consensus 5 IG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~-~~~~~~------~~~~~~DiVil~v~d~~i~~v~~~ 74 (153)
T d2i76a2 5 VGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGG-KAATLE------KHPELNGVVFVIVPDRYIKTVANH 74 (153)
T ss_dssp ESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCC-CCCSSC------CCCC---CEEECSCTTTHHHHHTT
T ss_pred EeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccc-cccchh------hhhccCcEEEEeccchhhhHHHhh
Confidence 4799999999987765444456899998885443221111 112332 367789999988 55555544443
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=95.94 E-value=0.0069 Score=43.03 Aligned_cols=60 Identities=3% Similarity=-0.081 Sum_probs=42.5
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCC--HHHHHHHhcCCCEEEEc
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASN--KKFLKTALRGVRSIICP 72 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d--~~~l~~~~~~~d~vi~~ 72 (208)
||..|.+|++++..+|++|+.+.-..+-. .+.++.++...-.+ .+.+.+.+..+|++|++
T Consensus 31 SGk~G~aiA~~~~~~Ga~V~li~g~~~~~---~p~~~~~~~~~t~~~m~~~~~~~~~~~D~~i~a 92 (223)
T d1u7za_ 31 SGKMGFAIAAAAARRGANVTLVSGPVSLP---TPPFVKRVDVMTALEMEAAVNASVQQQNIFIGC 92 (223)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECSCCCC---CCTTEEEEECCSHHHHHHHHHHHGGGCSEEEEC
T ss_pred cHHHHHHHHHHHHHcCCchhhhhcccccC---cccccccceehhhHHHHHHHHhhhccceeEeee
Confidence 99999999999999999999998665431 23456666543221 23344445689999976
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=95.88 E-value=0.01 Score=35.62 Aligned_cols=66 Identities=6% Similarity=-0.073 Sum_probs=44.8
Q ss_pred HHHHHHHhCCCcEEEEEcCchhh-hhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc---C-CCchhhhhhhcCCC
Q 028525 16 MVILSLIVKRTRIKALVKDKRNA-MESFGTYVESMAGDASNKKFLKTALRGVRSIICP---S-EGFISNAGSLKGVQ 87 (208)
Q Consensus 16 ~l~~~Ll~~g~~V~~~~R~~~~~-~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~---~-~~~~~~a~~~~gv~ 87 (208)
.|++.|+++||+|.+-++..+.. ..+...++++..+. +++ -+++.|.||+. . +.....++++.|++
T Consensus 16 ~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh--~~~----~i~~~d~vV~SsAI~~~npel~~A~~~gIp 86 (89)
T d1j6ua1 16 AVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPH--SAD----NWYDPDLVIKTPAVRDDNPEIVRARMERVP 86 (89)
T ss_dssp HHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSC--CTT----SCCCCSEEEECTTCCTTCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeee--ccc----ccCCCCEEEEecCcCCCCHHHHHHHHcCCC
Confidence 57888999999999999987653 33334567776542 222 24678999866 1 23356677888875
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=95.87 E-value=0.0006 Score=47.48 Aligned_cols=68 Identities=10% Similarity=-0.052 Sum_probs=45.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc----C----CceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF----G----TYVESMAGDASNKKFLKTALRGVRSIICPSEGF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~----~----~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~ 76 (208)
.+.|.-|.+++..|.+.||+|+++.|+++...... . +++.. .-++.-..++.++++++|.||.+.|..
T Consensus 13 iGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l-~~~i~~t~~l~~a~~~ad~iiiavPs~ 88 (189)
T d1n1ea2 13 FGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQL-ASNITFTSDVEKAYNGAEIILFVIPTQ 88 (189)
T ss_dssp ECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBC-CTTEEEESCHHHHHTTCSCEEECSCHH
T ss_pred ECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccccccccccccc-ccccccchhhhhccCCCCEEEEcCcHH
Confidence 37999999999999999999999999876532110 0 11211 011111234567899999999986543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=95.81 E-value=0.0028 Score=43.33 Aligned_cols=64 Identities=8% Similarity=0.077 Sum_probs=44.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhc--CC---ceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESF--GT---YVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~--~~---~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+.|..|+.++++|++.||+|.+++|++++..++. .. ...... ...+.+.+...+...+.++.+
T Consensus 7 IGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 75 (178)
T d1pgja2 7 VGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLK-AFETMEAFAASLKKPRKALIL 75 (178)
T ss_dssp ECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEE-ECSCHHHHHHHBCSSCEEEEC
T ss_pred EeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchh-hhhhhhHHHHhcccceEEEEe
Confidence 47999999999999999999999999998854331 11 111112 233566667777777777755
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.79 E-value=0.0049 Score=40.85 Aligned_cols=28 Identities=11% Similarity=-0.109 Sum_probs=26.0
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchh
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRN 37 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~ 37 (208)
.|.+|+.+++.|.++||+|++++|+...
T Consensus 18 ~G~mG~~la~~L~~~G~~V~~~d~~~~~ 45 (152)
T d2pv7a2 18 YGKLGGLFARYLRASGYPISILDREDWA 45 (152)
T ss_dssp TSHHHHHHHHHHHTTTCCEEEECTTCGG
T ss_pred CCHHHHHHHHHHHHcCCCcEeccccccc
Confidence 8999999999999999999999987654
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.75 E-value=0.028 Score=35.02 Aligned_cols=78 Identities=9% Similarity=-0.042 Sum_probs=55.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhh-hhh-cCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc-----hhhhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNA-MES-FGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF-----ISNAG 81 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~-~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~-----~~~a~ 81 (208)
+.|.+|..-++.|++.|.+|++++...+.. ..+ ...+++++...+.+. .+.+++.|+.+++.. +...+
T Consensus 19 G~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----dl~~~~lv~~at~d~~~n~~i~~~a 93 (113)
T d1pjqa1 19 GGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDET-----LLDSCWLAIAATDDDTVNQRVSDAA 93 (113)
T ss_dssp CCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGG-----GGTTCSEEEECCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHH-----HhCCCcEEeecCCCHHHHHHHHHHH
Confidence 699999999999999999999998776553 222 234688888887652 377899999885433 33455
Q ss_pred hhcCCCeEEEec
Q 028525 82 SLKGVQHVILLS 93 (208)
Q Consensus 82 ~~~gv~~~v~~S 93 (208)
+..|+ +|.+.
T Consensus 94 ~~~~i--lVNv~ 103 (113)
T d1pjqa1 94 ESRRI--FCNVV 103 (113)
T ss_dssp HHTTC--EEEET
T ss_pred HHcCC--EEEeC
Confidence 66664 45543
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.70 E-value=0.0033 Score=43.15 Aligned_cols=68 Identities=6% Similarity=-0.067 Sum_probs=45.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh--hhhhcC----C--ceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN--AMESFG----T--YVESMAGDASNKKFLKTALRGVRSIICPSEG 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~--~~~~~~----~--~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~ 75 (208)
.+.|..|.+++..|.+.||+|++..|+.++ ...... . .......++.-.+++.++++++|.||.+.+.
T Consensus 6 iGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avps 81 (180)
T d1txga2 6 LGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVST 81 (180)
T ss_dssp ESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSCG
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccch
Confidence 479999999999999999999999986443 211111 0 0111111222356678899999999998543
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.52 E-value=0.035 Score=36.33 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=40.9
Q ss_pred ccCccHHHHHHHHHhCC--CcEEEEEcCchhh--hhhc-CCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR--TRIKALVKDKRNA--MESF-GTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~--~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+|.+|++++..|..++ .++..++.++.+. .+.. .........- ....+..++++++|+||++
T Consensus 8 A~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~-~~~~~~~~~~~~aDivVit 75 (144)
T d1mlda1 8 ASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGY-LGPEQLPDCLKGCDVVVIP 75 (144)
T ss_dssp TTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEE-ESGGGHHHHHTTCSEEEEC
T ss_pred CCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeE-EcCCChHHHhCCCCEEEEC
Confidence 38999999999998887 5688888776552 2211 1111111111 1345566789999999987
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.023 Score=38.78 Aligned_cols=65 Identities=9% Similarity=-0.019 Sum_probs=50.7
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCchhhhh------hcC--CceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDKRNAME------SFG--TYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~------~~~--~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
++|..|++++..|.+.|. +++++.|++++... .+. -.......++.+.+.+.+.+..+|.||+++
T Consensus 25 GaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~T 98 (182)
T d1vi2a1 25 GAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGT 98 (182)
T ss_dssp CCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceecccc
Confidence 689999999999999984 78899998764221 111 124456789999999999999999999883
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.49 E-value=0.0081 Score=39.57 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=46.6
Q ss_pred hhhhc--cccCccHHHHHHHHHhCC---CcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc-
Q 028525 3 PMKKM--KRKKMNFRMVILSLIVKR---TRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF- 76 (208)
Q Consensus 3 ~~~~~--~~~G~iG~~l~~~Ll~~g---~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~- 76 (208)
||++. +.||++|+.+++.|.+++ .++..+..+.+.-.......-+....++++ ..+.++|++|++.+..
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~-----~~~~~~d~vf~a~p~~~ 76 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDS-----FDFSSVGLAFFAAAAEV 76 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGG-----CCGGGCSEEEECSCHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchh-----hhhccceEEEecCCcch
Confidence 66553 679999999999887655 467766543322111100111222222221 2356799999885533
Q ss_pred ---hhhhhhhcCCCeEEEecee
Q 028525 77 ---ISNAGSLKGVQHVILLSQL 95 (208)
Q Consensus 77 ---~~~a~~~~gv~~~v~~Ss~ 95 (208)
....+...|+ ++|-.|+.
T Consensus 77 s~~~~~~~~~~g~-~VID~Ss~ 97 (144)
T d2hjsa1 77 SRAHAERARAAGC-SVIDLSGA 97 (144)
T ss_dssp HHHHHHHHHHTTC-EEEETTCT
T ss_pred hhhhccccccCCc-eEEeechh
Confidence 2223344554 45555553
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.49 E-value=0.0062 Score=41.08 Aligned_cols=61 Identities=7% Similarity=-0.106 Sum_probs=39.6
Q ss_pred ccCccHHHHHHHHHhCCC--cEEEEEcCchhhhhhcCCc-eEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKRT--RIKALVKDKRNAMESFGTY-VESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~--~V~~~~R~~~~~~~~~~~~-v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+.|.+|..+++.|.+.|+ +|++++|+++........+ +....-+..+ .....+|.||+|.+
T Consensus 8 G~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~dlIila~p 71 (171)
T d2g5ca2 8 GVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAK-----VEDFSPDFVMLSSP 71 (171)
T ss_dssp SCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGG-----GGGTCCSEEEECSC
T ss_pred ccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhh-----hhccccccccccCC
Confidence 699999999999999985 6888888876643322222 2222222221 22346899998855
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.27 E-value=0.0055 Score=41.32 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=49.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+-|-.|...++.+...|.+|++++.+.++..+. ....++.. ..+.+.+.+.++.+|+||.+
T Consensus 39 GaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~---~~~~~~l~~~~~~aDivI~a 102 (168)
T d1pjca1 39 GGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELL---YSNSAEIETAVAEADLLIGA 102 (168)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEE---ECCHHHHHHHHHTCSEEEEC
T ss_pred CCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceee---hhhhhhHHHhhccCcEEEEe
Confidence 589999999999999999999999998875433 23345544 44788899999999999976
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.19 E-value=0.041 Score=37.28 Aligned_cols=88 Identities=10% Similarity=-0.042 Sum_probs=54.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEE--EEcCCCCHHHHHHHhc--CCCEEEEcCCCchhh----h
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVES--MAGDASNKKFLKTALR--GVRSIICPSEGFISN----A 80 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~--v~~Dl~d~~~l~~~~~--~~d~vi~~~~~~~~~----a 80 (208)
.+|.+|..+++.+...|.+|++++|++++.......+... ..-|-...+.+.+... ++|+||.+.++...+ .
T Consensus 38 a~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG~~~~~~~~~~ 117 (182)
T d1v3va2 38 AAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQ 117 (182)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCHHHHHHHGGG
T ss_pred CCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecCchhhhhhhhh
Confidence 4889999999988889999999999987743332223332 2233333444444443 589999886544322 2
Q ss_pred hhhcCCCeEEEeceeeec
Q 028525 81 GSLKGVQHVILLSQLSVY 98 (208)
Q Consensus 81 ~~~~gv~~~v~~Ss~~~~ 98 (208)
++..| +++.++..+.+
T Consensus 118 l~~~G--~~v~~G~~~~~ 133 (182)
T d1v3va2 118 MKDFG--KIAICGAISVY 133 (182)
T ss_dssp EEEEE--EEEECCCGGGT
T ss_pred ccCCC--eEEeecceeec
Confidence 22233 67766655444
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.17 E-value=0.065 Score=35.70 Aligned_cols=85 Identities=9% Similarity=-0.034 Sum_probs=52.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhh--hcCCceEEEE-cCCCCHHHHHHHh-----cCCCEEEEcCCCc--hh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAME--SFGTYVESMA-GDASNKKFLKTAL-----RGVRSIICPSEGF--IS 78 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~--~~~~~v~~v~-~Dl~d~~~l~~~~-----~~~d~vi~~~~~~--~~ 78 (208)
+.|.+|...+..+...|.+|+++++++.+... .++....++. ..-.+...+.+.+ .++|+||.++++. +.
T Consensus 34 G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~ 113 (170)
T d1e3ja2 34 GAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCIT 113 (170)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHH
T ss_pred cccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeecCCChHHHH
Confidence 58999999999888899999999999887432 2333333222 2223444444443 3589999885543 23
Q ss_pred hhhhhcC-CCeEEEec
Q 028525 79 NAGSLKG-VQHVILLS 93 (208)
Q Consensus 79 ~a~~~~g-v~~~v~~S 93 (208)
.+.+... -.++++++
T Consensus 114 ~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 114 IGINITRTGGTLMLVG 129 (170)
T ss_dssp HHHHHSCTTCEEEECS
T ss_pred HHHHHHhcCCceEEEe
Confidence 3333222 23777766
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=95.05 E-value=0.023 Score=38.62 Aligned_cols=84 Identities=14% Similarity=0.059 Sum_probs=44.4
Q ss_pred ccccCccHHHHHHHHHhCC-CcEEEEEcCchh---hhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC-Cchhhhh
Q 028525 7 MKRKKMNFRMVILSLIVKR-TRIKALVKDKRN---AMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE-GFISNAG 81 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~---~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~-~~~~~a~ 81 (208)
.+.||++|+.|++.|.+.. .++..+..+.+. .....+...........+.+. ..+++|+||++.+ +...+.+
T Consensus 7 vGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~---~~~~~dvvf~a~p~~~s~~~~ 83 (176)
T d1vkna1 7 IGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEK---VSKNCDVLFTALPAGASYDLV 83 (176)
T ss_dssp ESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHH---HHHHCSEEEECCSTTHHHHHH
T ss_pred ECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhH---hccccceEEEccccHHHHHHH
Confidence 4689999999999887753 567666533221 221111111111122334443 3457999999844 3333322
Q ss_pred hh-cCCCeEEEece
Q 028525 82 SL-KGVQHVILLSQ 94 (208)
Q Consensus 82 ~~-~gv~~~v~~Ss 94 (208)
.+ .++ ++|-.|+
T Consensus 84 ~~~~~~-~VIDlSa 96 (176)
T d1vkna1 84 RELKGV-KIIDLGA 96 (176)
T ss_dssp TTCCSC-EEEESSS
T ss_pred Hhhccc-eEEecCc
Confidence 22 233 5655554
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.65 E-value=0.022 Score=38.67 Aligned_cols=90 Identities=8% Similarity=-0.136 Sum_probs=51.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCH-HHHHHHh--cCCCEEEEcCCC-chhhhhhh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNK-KFLKTAL--RGVRSIICPSEG-FISNAGSL 83 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~-~~l~~~~--~~~d~vi~~~~~-~~~~a~~~ 83 (208)
+.+|-+|...++-+...|.+|++.++++++......-+.+.+. |.++. ++..... +++|+||.+.++ .+......
T Consensus 39 gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi-~~~~~~~~~~~~~~~~gvD~vid~vgg~~~~~~l~~ 117 (176)
T d1xa0a2 39 GATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVL-AREDVMAERIRPLDKQRWAAAVDPVGGRTLATVLSR 117 (176)
T ss_dssp STTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEE-ECC---------CCSCCEEEEEECSTTTTHHHHHHT
T ss_pred eccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceee-ecchhHHHHHHHhhccCcCEEEEcCCchhHHHHHHH
Confidence 3599999999998888999999999988874322222222221 33321 2222222 357999977443 33333322
Q ss_pred c-CCCeEEEeceeeec
Q 028525 84 K-GVQHVILLSQLSVY 98 (208)
Q Consensus 84 ~-gv~~~v~~Ss~~~~ 98 (208)
. .-.|++.++..+..
T Consensus 118 l~~~Griv~~G~~~g~ 133 (176)
T d1xa0a2 118 MRYGGAVAVSGLTGGA 133 (176)
T ss_dssp EEEEEEEEECSCCSSS
T ss_pred hCCCceEEEeecccCc
Confidence 2 12378888766533
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.53 E-value=0.025 Score=37.86 Aligned_cols=60 Identities=12% Similarity=-0.098 Sum_probs=46.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG 75 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~ 75 (208)
.+.|.||+.+++.|...|-+|++..++|-++.+..-.+..+. .+.+++..+|++|.+++.
T Consensus 30 ~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~--------~~~~a~~~adivvtaTGn 89 (163)
T d1li4a1 30 AGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT--------TMDEACQEGNIFVTTTGC 89 (163)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC--------CHHHHTTTCSEEEECSSC
T ss_pred eccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEee--------ehhhhhhhccEEEecCCC
Confidence 369999999999999999999999999877544333344443 245788889999988664
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.49 E-value=0.14 Score=33.36 Aligned_cols=60 Identities=7% Similarity=-0.044 Sum_probs=39.8
Q ss_pred ccCccHHHHHHHHHhCC--CcEEEEEcCchh--h----hhh------cCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR--TRIKALVKDKRN--A----MES------FGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~--~----~~~------~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+|.+|+.++..|+.++ .++..++++++. . .++ ...++++....-.|. ++++++|+||.+
T Consensus 8 A~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~----~~l~~aDvVVit 81 (145)
T d1hyea1 8 ASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL----RIIDESDVVIIT 81 (145)
T ss_dssp TTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG----GGGTTCSEEEEC
T ss_pred CCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchH----HHhccceEEEEe
Confidence 38999999999999888 589999887532 1 111 122344443323332 368899999987
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.47 E-value=0.032 Score=37.95 Aligned_cols=85 Identities=7% Similarity=-0.006 Sum_probs=46.7
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCchh--hhhhcCCceEEE----------EcCCCCHHHHHHHhcCCCEEEEcCCC
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKRN--AMESFGTYVESM----------AGDASNKKFLKTALRGVRSIICPSEG 75 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~--~~~~~~~~v~~v----------~~Dl~d~~~l~~~~~~~d~vi~~~~~ 75 (208)
+.|+||+.++|.|.+++ .+|.++....+. ....+..+.... ...+.-...+..++.++|+||-|+|.
T Consensus 8 GfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiViecTG~ 87 (178)
T d1b7go1 8 GYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVVDTTPN 87 (178)
T ss_dssp CCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEEECCST
T ss_pred CCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEEECCCC
Confidence 58999999999999874 788888654322 111110011110 01111122345566789999988665
Q ss_pred ch----hhhhhhcCCCeEEEece
Q 028525 76 FI----SNAGSLKGVQHVILLSQ 94 (208)
Q Consensus 76 ~~----~~a~~~~gv~~~v~~Ss 94 (208)
+. .+...++| +++|+.++
T Consensus 88 f~~~e~a~~hl~~G-~KvIi~~~ 109 (178)
T d1b7go1 88 GVGAQYKPIYLQLQ-RNAIFQGG 109 (178)
T ss_dssp THHHHHHHHHHHTT-CEEEECTT
T ss_pred cCCHHHHHHHHHcC-CEEEEECC
Confidence 42 12223456 46666543
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.45 E-value=0.023 Score=38.83 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=39.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|..-|.+|++++|.+.... .. -.+++.+++..+|+|+++
T Consensus 49 G~G~IG~~va~~l~~~g~~v~~~d~~~~~~~------~~-------~~~~l~ell~~sDiv~~~ 99 (181)
T d1qp8a1 49 GLGEIGTRVGKILAALGAQVRGFSRTPKEGP------WR-------FTNSLEEALREARAAVCA 99 (181)
T ss_dssp SCSTHHHHHHHHHHHTTCEEEEECSSCCCSS------SC-------CBSCSHHHHTTCSEEEEC
T ss_pred ccccccccceeeeeccccccccccccccccc------ee-------eeechhhhhhccchhhcc
Confidence 6999999999999999999999988754321 01 112456899999999976
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.40 E-value=0.032 Score=37.31 Aligned_cols=85 Identities=9% Similarity=-0.007 Sum_probs=54.9
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCC--CchhhhhhhcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSE--GFISNAGSLKGV 86 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~--~~~~~a~~~~gv 86 (208)
+.|.+|...++.+...|.+++++++++++......-+.+.+ .|..+.+......+++|++|.+.+ ..+..+.+....
T Consensus 38 GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~-i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~ 116 (168)
T d1uufa2 38 GIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEV-VNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKR 116 (168)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEE-EETTCHHHHHTTTTCEEEEEECCSSCCCHHHHHTTEEE
T ss_pred ccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEE-EECchhhHHHHhcCCCceeeeeeecchhHHHHHHHHhc
Confidence 47889999999888899999999988876422111123332 477777777777778999997743 223333332221
Q ss_pred -CeEEEece
Q 028525 87 -QHVILLSQ 94 (208)
Q Consensus 87 -~~~v~~Ss 94 (208)
.+++.++.
T Consensus 117 ~G~iv~~G~ 125 (168)
T d1uufa2 117 DGTMTLVGA 125 (168)
T ss_dssp EEEEEECCC
T ss_pred CCEEEEecc
Confidence 26766653
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.92 E-value=0.049 Score=36.75 Aligned_cols=87 Identities=13% Similarity=-0.021 Sum_probs=53.9
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCH---HHHHHHh--cCCCEEEEcCCCchhh-hhh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNK---KFLKTAL--RGVRSIICPSEGFISN-AGS 82 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~---~~l~~~~--~~~d~vi~~~~~~~~~-a~~ 82 (208)
++|.+|..+++.+...|.+|++.++++++.......+...+ .|..++ +.+.+.. .++|++|.+.++...+ +.+
T Consensus 34 a~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~v-i~~~~~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~ 112 (183)
T d1pqwa_ 34 ATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYV-GDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQ 112 (183)
T ss_dssp TTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEE-EETTCSTHHHHHHHHTTTCCEEEEEECCCTHHHHHHHH
T ss_pred CCCCcccccchhhccccccceeeeccccccccccccccccc-ccCCccCHHHHHHHHhCCCCEEEEEecccchHHHHHHH
Confidence 48999999999888889999999998876433333344433 244443 4444444 3589999885544332 222
Q ss_pred hcC-CCeEEEeceee
Q 028525 83 LKG-VQHVILLSQLS 96 (208)
Q Consensus 83 ~~g-v~~~v~~Ss~~ 96 (208)
... -.++|.++..+
T Consensus 113 ~l~~~G~~v~~G~~~ 127 (183)
T d1pqwa_ 113 ILAPGGRFIELGKKD 127 (183)
T ss_dssp TEEEEEEEEECSCGG
T ss_pred HhcCCCEEEEEccCC
Confidence 111 13777775443
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.84 E-value=0.081 Score=35.62 Aligned_cols=85 Identities=15% Similarity=0.065 Sum_probs=48.9
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcC-chh-hhhhcCCceEEEEcCCC-----------CHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKD-KRN-AMESFGTYVESMAGDAS-----------NKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~-~~~-~~~~~~~~v~~v~~Dl~-----------d~~~l~~~~~~~d~vi~~~~ 74 (208)
+-|+||+.+++.|+++. .+|.++.-. +.. ...+...+...+..+-. ....+..+++++|+|+-|+|
T Consensus 9 GfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDvViEcTG 88 (172)
T d2czca2 9 GYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATP 88 (172)
T ss_dssp CCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEEEECCS
T ss_pred CCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCEEEECCC
Confidence 58999999999998764 677777642 222 11111112333332221 22345556678999998877
Q ss_pred Cchh-h---hhhhcCCCeEEEece
Q 028525 75 GFIS-N---AGSLKGVQHVILLSQ 94 (208)
Q Consensus 75 ~~~~-~---a~~~~gv~~~v~~Ss 94 (208)
.+.. + .-.++|+|+ |++|+
T Consensus 89 ~f~~~~~~~~hl~~G~k~-Vi~s~ 111 (172)
T d2czca2 89 GGIGAKNKPLYEKAGVKA-IFQGG 111 (172)
T ss_dssp TTHHHHHHHHHHHHTCEE-EECTT
T ss_pred CCCCHHHHHHHHHcCCCE-EEECC
Confidence 6532 2 223578765 45554
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.62 E-value=0.016 Score=38.94 Aligned_cols=64 Identities=6% Similarity=-0.058 Sum_probs=41.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|...+..+...|.+|+++++++++......-+.+.+.-...+.+.......++|.++.+
T Consensus 35 GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~ 98 (168)
T d1piwa2 35 GLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 98 (168)
T ss_dssp CCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEE
Confidence 4799999999888888999999999988743222112332221222333334445678999976
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.46 E-value=0.049 Score=36.57 Aligned_cols=83 Identities=10% Similarity=-0.085 Sum_probs=51.0
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCH---HHHHHHhc--CCCEEEEcCCCchhh----
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNK---KFLKTALR--GVRSIICPSEGFISN---- 79 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~---~~l~~~~~--~~d~vi~~~~~~~~~---- 79 (208)
.+|.+|...++.+...|.+|+++++++++......-+...+ .|..+. +.+.+... ++|+||.+.++...+
T Consensus 37 a~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~v-i~~~~~~~~~~i~~~t~~~g~d~v~d~~g~~~~~~~~~ 115 (174)
T d1yb5a2 37 ASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEV-FNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLS 115 (174)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEE-EETTSTTHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH
T ss_pred ccccccccccccccccCcccccccccccccccccccCcccc-cccccccHHHHhhhhhccCCceEEeecccHHHHHHHHh
Confidence 48999999999998899999999998776432222233332 255553 33334433 479999874443222
Q ss_pred hhhhcCCCeEEEece
Q 028525 80 AGSLKGVQHVILLSQ 94 (208)
Q Consensus 80 a~~~~gv~~~v~~Ss 94 (208)
.++.. .++|.++.
T Consensus 116 ~l~~~--G~iv~~G~ 128 (174)
T d1yb5a2 116 LLSHG--GRVIVVGS 128 (174)
T ss_dssp HEEEE--EEEEECCC
T ss_pred ccCCC--CEEEEEec
Confidence 22222 37777653
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=93.36 E-value=0.066 Score=36.05 Aligned_cols=85 Identities=11% Similarity=-0.009 Sum_probs=46.7
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCc-hh-hhhhcCCceEEEEcC-----------CCCHHHHHHHhcCCCEEEEcCC
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDK-RN-AMESFGTYVESMAGD-----------ASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~-~~-~~~~~~~~v~~v~~D-----------l~d~~~l~~~~~~~d~vi~~~~ 74 (208)
+-|+||+.+++.|++++ .+|.++.-.. .. .......+....... +.-...+..+++++|+|+-|+|
T Consensus 8 GfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDvViEcTG 87 (171)
T d1cf2o1 8 GYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIVIDCTP 87 (171)
T ss_dssp CCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEEEECCS
T ss_pred cCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCEEEEccC
Confidence 58999999999998876 6777765432 21 111111112221111 1111234556778999998877
Q ss_pred Cchh----hhhhhcCCCeEEEece
Q 028525 75 GFIS----NAGSLKGVQHVILLSQ 94 (208)
Q Consensus 75 ~~~~----~a~~~~gv~~~v~~Ss 94 (208)
.+.. ..-..+|+ ++|+.|+
T Consensus 88 ~f~~~~~~~~hl~~G~-K~vi~~~ 110 (171)
T d1cf2o1 88 EGIGAKNLKMYKEKGI-KAIFQGG 110 (171)
T ss_dssp TTHHHHHHHHHHHTTC-EEEECTT
T ss_pred CCCCHHHHHHHHHcCC-CEEEECC
Confidence 5532 12234676 4566654
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=93.29 E-value=0.042 Score=38.01 Aligned_cols=54 Identities=6% Similarity=-0.138 Sum_probs=40.0
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|..-|.+|+++++..+...... .+ ..+++.+.++.+|+|+++
T Consensus 50 G~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~~--~~--------~~~~l~~~l~~sDii~~~ 103 (197)
T d1j4aa1 50 GTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKK--GY--------YVDSLDDLYKQADVISLH 103 (197)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHT--TC--------BCSCHHHHHHHCSEEEEC
T ss_pred cccccchhHHHhHhhhcccccccCcccccccccc--ee--------eecccccccccccccccc
Confidence 6999999999999888999999987655433221 11 123466788889999966
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.14 E-value=0.076 Score=34.78 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=39.6
Q ss_pred ccCccHHHHHHHHHhCC--CcEEEEEcCchhhh----hh------cCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR--TRIKALVKDKRNAM----ES------FGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~----~~------~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.++..|+.++ .++..+++++++.. ++ ....+.+...|+ ++++++|+||.+
T Consensus 13 GaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-------~~l~daDvvvit 81 (148)
T d1ldna1 13 GAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-------DDCRDADLVVIC 81 (148)
T ss_dssp CCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-------GGTTTCSEEEEC
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-------HHhccceeEEEe
Confidence 57999999999999887 47999998876521 11 122344444444 357789999876
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=92.88 E-value=0.11 Score=34.02 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=39.1
Q ss_pred ccCccHHHHHHHHHhCC--CcEEEEEcCchhhh----h------hcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKR--TRIKALVKDKRNAM----E------SFGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~----~------~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|.+|+.++..|+.+| .++..+++++.+.. + .......+...|+ +.++++|+||.++
T Consensus 8 GaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~-------~~l~~adiVVita 77 (146)
T d1hyha1 8 GLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-------AALADADVVISTL 77 (146)
T ss_dssp CCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-------GGGTTCSEEEECC
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH-------HHhccccEEEEec
Confidence 57999999999999887 58998888776521 1 1122334444443 2467899998763
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=92.77 E-value=0.069 Score=35.77 Aligned_cols=60 Identities=17% Similarity=0.027 Sum_probs=41.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cCCceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FGTYVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|-.+++++..|.+.|.+|+++.|+.++...+ +.....+...++.+. ....+|.||+|+
T Consensus 25 GaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~-----~~~~~dliIN~T 87 (170)
T d1nyta1 25 GAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDEL-----EGHEFDLIINAT 87 (170)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGG-----TTCCCSEEEECC
T ss_pred CCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccc-----cccccceeeccc
Confidence 699999999999999999999999998874332 222122223343332 134689999883
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=92.77 E-value=0.049 Score=36.66 Aligned_cols=67 Identities=9% Similarity=-0.107 Sum_probs=44.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCH---HHHHHHhc--CCCEEEEcCCCc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNK---KFLKTALR--GVRSIICPSEGF 76 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~---~~l~~~~~--~~d~vi~~~~~~ 76 (208)
++|.+|..+++.+...|.+|++.++++++......-+.+.+ .|..++ +.+.++.. ++|+|+.+.++.
T Consensus 37 a~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~v-i~~~~~d~~~~v~~~t~g~g~d~v~d~~g~~ 108 (179)
T d1qora2 37 AAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQV-INYREEDLVERLKEITGGKKVRVVYDSVGRD 108 (179)
T ss_dssp TTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEE-EETTTSCHHHHHHHHTTTCCEEEEEECSCGG
T ss_pred cccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEE-EECCCCCHHHHHHHHhCCCCeEEEEeCccHH
Confidence 58889999999888889999999999887433222233333 255553 34444443 468888775443
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=92.66 E-value=0.011 Score=40.24 Aligned_cols=88 Identities=6% Similarity=-0.202 Sum_probs=52.0
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCCCch-hhhhhhc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSEGFI-SNAGSLK 84 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~~~-~~a~~~~ 84 (208)
+++|-+|...++.+...|.+|++++|++++......-+.+.+. |..+.+. .+.+. ..|.+|.+.++.. .......
T Consensus 39 gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi-~~~~~~~-~~~l~~~~~~~vvD~Vgg~~~~~~l~~l 116 (177)
T d1o89a2 39 GASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVL-PRDEFAE-SRPLEKQVWAGAIDTVGDKVLAKVLAQM 116 (177)
T ss_dssp STTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEE-EGGGSSS-CCSSCCCCEEEEEESSCHHHHHHHHHTE
T ss_pred EccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcccccc-ccccHHH-HHHHHhhcCCeeEEEcchHHHHHHHHHh
Confidence 3599999999998888999999999998885433222344332 4333222 22232 2478887754432 2222221
Q ss_pred C-CCeEEEeceeee
Q 028525 85 G-VQHVILLSQLSV 97 (208)
Q Consensus 85 g-v~~~v~~Ss~~~ 97 (208)
. -.|+|.++..+.
T Consensus 117 ~~~Griv~~G~~~~ 130 (177)
T d1o89a2 117 NYGGCVAACGLAGG 130 (177)
T ss_dssp EEEEEEEECCCTTC
T ss_pred ccccceEeecccCC
Confidence 1 127877765543
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.61 E-value=0.11 Score=33.71 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=39.1
Q ss_pred ccCccHHHHHHHHHhCC--CcEEEEEcCchhhhh---------hcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR--TRIKALVKDKRNAME---------SFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~~---------~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.++..|+.++ .++..+++++++... .+........+|+ ++++++|+||.+
T Consensus 7 GaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~-------~~~~~adivvit 74 (140)
T d1a5za1 7 GLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY-------ADLKGSDVVIVA 74 (140)
T ss_dssp CCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG-------GGGTTCSEEEEC
T ss_pred CcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcH-------HHhcCCCEEEEe
Confidence 57999999999998877 689999888765211 0122344444433 347899999977
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=92.50 E-value=0.1 Score=36.10 Aligned_cols=72 Identities=6% Similarity=-0.083 Sum_probs=46.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-CCCEEEEc-CCCch-hhhhhhc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-GVRSIICP-SEGFI-SNAGSLK 84 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-~~d~vi~~-~~~~~-~~a~~~~ 84 (208)
++-|.+|+++++.|.+.|.+|++.+.+..........+.+.+ +.+ +++. .||+++-| .++.+ .+.+++.
T Consensus 33 qG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~-----~~~---~~~~~~~DI~iPcA~~~~I~~~~a~~i 104 (201)
T d1c1da1 33 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-----ALE---DVLSTPCDVFAPCAMGGVITTEVARTL 104 (201)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-----CGG---GGGGCCCSEEEECSCSCCBCHHHHHHC
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccccc-----Ccc---ccccccceeeecccccccccHHHHhhh
Confidence 469999999999999999999999887766433322233433 222 2443 79999955 44332 3344555
Q ss_pred CCC
Q 028525 85 GVQ 87 (208)
Q Consensus 85 gv~ 87 (208)
+++
T Consensus 105 ~ak 107 (201)
T d1c1da1 105 DCS 107 (201)
T ss_dssp CCS
T ss_pred hhh
Confidence 554
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=92.48 E-value=0.074 Score=35.38 Aligned_cols=60 Identities=10% Similarity=-0.103 Sum_probs=48.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCCc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEGF 76 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~~ 76 (208)
+=|.+|+-++++|...|.+|++.-.+|-++.+..-++.++.. +.++++..|++|.+++..
T Consensus 30 GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~--------~~~a~~~aDi~vTaTGn~ 89 (163)
T d1v8ba1 30 GYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVT--------LDEIVDKGDFFITCTGNV 89 (163)
T ss_dssp CCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECC--------HHHHTTTCSEEEECCSSS
T ss_pred cccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCc--------hhHccccCcEEEEcCCCC
Confidence 589999999999999999999999999876555445666543 357889999999986543
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.43 E-value=0.1 Score=34.65 Aligned_cols=57 Identities=11% Similarity=0.027 Sum_probs=38.2
Q ss_pred ccCccHHHHHHHHHhCC--CcEEEEEcCchhhh----hh------cCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR--TRIKALVKDKRNAM----ES------FGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~----~~------~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.++..|+.++ .++..++++++++. ++ .+........|+ +.+.++|+||.+
T Consensus 26 GaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-------~~~~~adivvit 94 (159)
T d2ldxa1 26 GVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-------NVSANSKLVIIT 94 (159)
T ss_dssp CCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-------GGGTTEEEEEEC
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-------hhhccccEEEEe
Confidence 58999999999999887 47999998876521 11 111222233333 246789999876
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.43 E-value=0.44 Score=31.43 Aligned_cols=86 Identities=5% Similarity=-0.146 Sum_probs=53.8
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCchhhhhhcCCce-EEEEcCCCCHHHHHHHh-----cCCCEEEEcCCCc--hhh
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDKRNAMESFGTYV-ESMAGDASNKKFLKTAL-----RGVRSIICPSEGF--ISN 79 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~v-~~v~~Dl~d~~~l~~~~-----~~~d~vi~~~~~~--~~~ 79 (208)
+.|.+|...+..+...|. +|++.++++.+......-+. .++..+-.+.....+.+ .++|+||.++++. +..
T Consensus 34 G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~ 113 (171)
T d1pl8a2 34 GAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQA 113 (171)
T ss_dssp CCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHH
T ss_pred CCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccCCchhHHH
Confidence 579999999999988997 79999999887432211123 33444445655555544 2679999886543 233
Q ss_pred hhhhcC-CCeEEEece
Q 028525 80 AGSLKG-VQHVILLSQ 94 (208)
Q Consensus 80 a~~~~g-v~~~v~~Ss 94 (208)
+.+... -.++++++.
T Consensus 114 a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 114 GIYATRSGGTLVLVGL 129 (171)
T ss_dssp HHHHSCTTCEEEECSC
T ss_pred HHHHhcCCCEEEEEec
Confidence 333222 237777763
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.35 E-value=0.093 Score=35.61 Aligned_cols=64 Identities=8% Similarity=-0.151 Sum_probs=45.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcC----------------------CCCHHHHHHHhcCC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGD----------------------ASNKKFLKTALRGV 66 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~D----------------------l~d~~~l~~~~~~~ 66 (208)
+-|-.|.+.++..+.-|.+|++++.+.++..+.....-.++..+ ....+.+.+.+..+
T Consensus 36 GaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l~~~l~~a 115 (183)
T d1l7da1 36 GVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKT 115 (183)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHHHHTTC
T ss_pred cCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHHHHHHHhh
Confidence 58999999999999999999999988876443322111222111 12356677888999
Q ss_pred CEEEEc
Q 028525 67 RSIICP 72 (208)
Q Consensus 67 d~vi~~ 72 (208)
|.||.+
T Consensus 116 DlVI~t 121 (183)
T d1l7da1 116 DIAITT 121 (183)
T ss_dssp SEEEEC
T ss_pred hhheee
Confidence 999976
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=92.09 E-value=0.11 Score=34.62 Aligned_cols=56 Identities=4% Similarity=-0.039 Sum_probs=38.6
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCchhhhhhcCC-ceEEEEcCCCCHHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDKRNAMESFGT-YVESMAGDASNKKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~~~~~-~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~ 73 (208)
+.|..+++++..|.+.|. +|.++.|+.++...+... +...+. ++. ...+|.||+|+
T Consensus 24 GaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~-~~~--------~~~~DliINaT 81 (167)
T d1npya1 24 GSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYIN-SLE--------NQQADILVNVT 81 (167)
T ss_dssp CSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEES-CCT--------TCCCSEEEECS
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhh-ccc--------ccchhhheecc
Confidence 799999999999999995 899999998875433210 223221 111 13579999883
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=92.06 E-value=0.057 Score=36.94 Aligned_cols=57 Identities=4% Similarity=-0.194 Sum_probs=39.8
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|..-|.+|..++|...........++. ...++.+.++.+|+|+.+
T Consensus 51 G~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~-------~~~~l~~~l~~sD~v~~~ 107 (188)
T d2naca1 51 AAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLT-------WHATREDMYPVCDVVTLN 107 (188)
T ss_dssp CCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCE-------ECSSHHHHGGGCSEEEEC
T ss_pred cccccchhhhhhhhccCceEEEEeecccccccccccccc-------ccCCHHHHHHhccchhhc
Confidence 599999999999998899999999865432211111122 124455688999999965
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=91.82 E-value=0.056 Score=36.23 Aligned_cols=66 Identities=6% Similarity=-0.035 Sum_probs=38.6
Q ss_pred Cchhhhc-cccCccHHHHHHHHHhC-CCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEcCCC
Q 028525 1 MGPMKKM-KRKKMNFRMVILSLIVK-RTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICPSEG 75 (208)
Q Consensus 1 ~~~~~~~-~~~G~iG~~l~~~Ll~~-g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~~ 75 (208)
|.+|+.- .+.|.+|+.+++.|.+. +.+++++.....+... ...... ..+ ......++|+|+.+++.
T Consensus 1 M~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~----~~~~~~--~~~---~~~~~~~~D~Vvi~tp~ 68 (170)
T d1f06a1 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT----KTPVFD--VAD---VDKHADDVDVLFLCMGS 68 (170)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS----SSCEEE--GGG---GGGTTTTCSEEEECSCT
T ss_pred CCcceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc----cccccc--chh---hhhhccccceEEEeCCC
Confidence 4555443 37999999999999875 5787776544332211 111111 112 22345679999988443
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=91.67 E-value=0.11 Score=34.16 Aligned_cols=23 Identities=4% Similarity=0.030 Sum_probs=18.7
Q ss_pred hhhhc--cccCccHHHHHHHHHhCC
Q 028525 3 PMKKM--KRKKMNFRMVILSLIVKR 25 (208)
Q Consensus 3 ~~~~~--~~~G~iG~~l~~~Ll~~g 25 (208)
|||+- +.+|++|++++..|...+
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~ 28 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGE 28 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcc
Confidence 77775 348999999999998765
|
| >d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB species: Escherichia coli [TaxId: 562]
Probab=91.57 E-value=0.52 Score=35.74 Aligned_cols=94 Identities=4% Similarity=-0.051 Sum_probs=59.9
Q ss_pred Cchhhhccc---cC-ccHHHHHHHHHhCCCcEEEEEcCch--------hhhhhcCCceEEEEcCCCCHH---HHHHHhcC
Q 028525 1 MGPMKKMKR---KK-MNFRMVILSLIVKRTRIKALVKDKR--------NAMESFGTYVESMAGDASNKK---FLKTALRG 65 (208)
Q Consensus 1 ~~~~~~~~~---~G-~iG~~l~~~Ll~~g~~V~~~~R~~~--------~~~~~~~~~v~~v~~Dl~d~~---~l~~~~~~ 65 (208)
+||+...++ +. .-|-...+.|.+-|.+|+=+-+... ......+.+-..+..|+.+++ .+.++++.
T Consensus 6 ~gPL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~~Lv~~ 85 (402)
T d1xk7a1 6 FGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMET 85 (402)
T ss_dssp CSTTTTCEEEEECCSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHHHHHTT
T ss_pred CcCCCCCEEEEeCChhHHHHHHHHHHHhCCeEEEECCCCCCCccccCCchhHHhCCCCeEEEEeCcCHHHHHHHHHHHhh
Confidence 577765543 44 4477777777888999998875431 122222345678889998854 45667789
Q ss_pred CCEEEEc-CCCch------hhhhhhcCCCeEEEecee
Q 028525 66 VRSIICP-SEGFI------SNAGSLKGVQHVILLSQL 95 (208)
Q Consensus 66 ~d~vi~~-~~~~~------~~a~~~~gv~~~v~~Ss~ 95 (208)
+|+||.+ .++.. .+.+++.+- ++||+|-.
T Consensus 86 aDv~i~n~rpg~~~~lGl~~~~L~~~nP-~lI~~sis 121 (402)
T d1xk7a1 86 TDIFIEASKGPAFARRGITDEVLWQHNP-KLVIAHLS 121 (402)
T ss_dssp CSEEEEECSSSHHHHTTCCHHHHHHHCT-TCEEEEEE
T ss_pred cCCceeeecccccccccccccchhhccc-cccceeee
Confidence 9999976 55432 344444443 57777643
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=91.44 E-value=0.047 Score=37.61 Aligned_cols=56 Identities=9% Similarity=-0.133 Sum_probs=39.7
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+-|.||+.+++.|..-|.+|.+++|......... .++. ..+++.++++.+|+|+++
T Consensus 56 G~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-~~~~-------~~~~l~~ll~~sD~i~~~ 111 (193)
T d1mx3a1 56 GLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERA-LGLQ-------RVSTLQDLLFHSDCVTLH 111 (193)
T ss_dssp CCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHH-HTCE-------ECSSHHHHHHHCSEEEEC
T ss_pred ccccccccceeeeeccccceeeccCcccccchhh-hccc-------cccchhhccccCCEEEEe
Confidence 6999999999999988999999998755422111 1122 123456678889999965
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=91.03 E-value=0.11 Score=29.87 Aligned_cols=31 Identities=6% Similarity=-0.147 Sum_probs=27.6
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNA 38 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~ 38 (208)
+++|-+|...++.+...|++|++.++++++.
T Consensus 39 gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~ 69 (77)
T d1o8ca2 39 GASGGVGSTAVALLHKLGYQVVAVSGRESTH 69 (77)
T ss_dssp STTSHHHHHHHHHHHHTTCCEEEEESCGGGH
T ss_pred eCCCcHHHHHHHHHHHcCCeEEEEECCHHHH
Confidence 3699999999998888999999999998774
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=90.92 E-value=0.065 Score=37.02 Aligned_cols=53 Identities=8% Similarity=-0.140 Sum_probs=38.8
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|..-|.+|++++|...+... ..+. . .++.++++.+|+|+++
T Consensus 52 G~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~---~~~~-----~---~~l~~l~~~~D~v~~~ 104 (199)
T d1dxya1 52 GTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH---PDFD-----Y---VSLEDLFKQSDVIDLH 104 (199)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSSCCSSCC---TTCE-----E---CCHHHHHHHCSEEEEC
T ss_pred ecccccccccccccccceeeeccCCccchhhh---cchh-----H---HHHHHHHHhcccceee
Confidence 69999999999999889999999886544221 1122 1 2355678889999965
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=90.73 E-value=0.073 Score=36.52 Aligned_cols=57 Identities=5% Similarity=-0.168 Sum_probs=39.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+-|.||+.+++.|..-|.+|..+++.............. ..+++.++++.+|+|+.+
T Consensus 54 G~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~-------~~~~l~~ll~~sD~v~l~ 110 (191)
T d1gdha1 54 GFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQAT-------FHDSLDSLLSVSQFFSLN 110 (191)
T ss_dssp CCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCE-------ECSSHHHHHHHCSEEEEC
T ss_pred ecccchHHHHHHHHhhccccccccccccccchhhccccc-------ccCCHHHHHhhCCeEEec
Confidence 589999999999988899999998765432211111111 123466788899999965
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=90.68 E-value=0.07 Score=35.85 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=42.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhh---cCC--ceEEEEcCCCCHHHHHHHhcCCCEEEEcCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMES---FGT--YVESMAGDASNKKFLKTALRGVRSIICPSE 74 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~---~~~--~v~~v~~Dl~d~~~l~~~~~~~d~vi~~~~ 74 (208)
.++|..+++++..|.+.+-+|+++.|+.+++..+ +.. ++..+..|-. .+..+|.+|+|++
T Consensus 24 lGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~-------~~~~~diiIN~tp 88 (171)
T d1p77a1 24 LGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSI-------PLQTYDLVINATS 88 (171)
T ss_dssp ECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGC-------CCSCCSEEEECCC
T ss_pred ECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccc-------cccccceeeeccc
Confidence 3699999999999998888999999998774332 221 3444443322 2457899998843
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.37 E-value=0.39 Score=31.42 Aligned_cols=65 Identities=9% Similarity=0.013 Sum_probs=43.8
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCC-C-HHHHHHHhcCCCEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDAS-N-KKFLKTALRGVRSIICPS 73 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~-d-~~~l~~~~~~~d~vi~~~ 73 (208)
+.|-+|...+..+...|++|++.++++++......-+.+.+....+ | .+.+.+...+.+.+|.++
T Consensus 35 G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 101 (168)
T d1rjwa2 35 GIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTA 101 (168)
T ss_dssp CCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESS
T ss_pred ecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeec
Confidence 5899999999999999999999999888754332234454433222 2 444555566777776653
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=90.36 E-value=0.23 Score=32.14 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=35.9
Q ss_pred ccCccHHHHHHHHHhCC--CcEEEEEcCchhh----hhhcC-----CceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR--TRIKALVKDKRNA----MESFG-----TYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~----~~~~~-----~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.++..|+.++ .++..+++++++. .++.. .......+| .+.++++|+|+.+
T Consensus 8 GaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~-------~~~~~~adivvit 75 (142)
T d1y6ja1 8 GAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD-------YSDVKDCDVIVVT 75 (142)
T ss_dssp CCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C-------GGGGTTCSEEEEC
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc-------HHHhCCCceEEEe
Confidence 57999999999999887 4899999887652 22111 122332222 2357889999876
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=90.19 E-value=0.025 Score=38.48 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=20.7
Q ss_pred ccccCccHHHHHHHHHhC-CCcEEEEE
Q 028525 7 MKRKKMNFRMVILSLIVK-RTRIKALV 32 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~-g~~V~~~~ 32 (208)
.+.||++|+.|++.|.+. .+++..+.
T Consensus 7 iGATGyvG~eLlrlL~~HP~~ei~~l~ 33 (179)
T d2g17a1 7 VGASGYAGAELVSYVNRHPHMTITALT 33 (179)
T ss_dssp ETTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred ECcccHHHHHHHHHHHhCCCCceEeeE
Confidence 467999999999988886 46776553
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=90.16 E-value=0.35 Score=31.91 Aligned_cols=57 Identities=9% Similarity=-0.045 Sum_probs=38.2
Q ss_pred ccCccHHHHHHHHHhCC--CcEEEEEcCchhhh----hh------cCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR--TRIKALVKDKRNAM----ES------FGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~----~~------~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.++..|+.+| .++..+++++++.. ++ .........+|+. .++++|+||++
T Consensus 27 GaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~-------~~~~adiVVit 95 (160)
T d1i0za1 27 GVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYS-------VTANSKIVVVT 95 (160)
T ss_dssp CCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGG-------GGTTCSEEEEC
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchh-------hcccccEEEEe
Confidence 58999999999999998 48999998765521 11 1112222233332 47789999876
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=90.03 E-value=0.33 Score=31.26 Aligned_cols=58 Identities=7% Similarity=-0.129 Sum_probs=38.9
Q ss_pred ccCccHHHHHHHHHhCC--CcEEEEEcCchhhh----hh------cCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR--TRIKALVKDKRNAM----ES------FGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~----~~------~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.++..|+.++ .++..+++++.+.. .. ......+... .|. ++++++|+|+.+
T Consensus 7 GaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~----~~~~dadvvvit 76 (142)
T d1guza1 7 GAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDY----ADTANSDIVIIT 76 (142)
T ss_dssp CCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCG----GGGTTCSEEEEC
T ss_pred CcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCH----HHhcCCeEEEEE
Confidence 57999999999999887 68999998876521 11 1123333322 222 357889999876
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.03 E-value=0.079 Score=36.23 Aligned_cols=31 Identities=3% Similarity=-0.170 Sum_probs=25.3
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAM 39 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~ 39 (208)
.+.|++|..++. ++++||+|++++-++.+..
T Consensus 6 iGlG~vGl~~a~-~~a~g~~V~g~Din~~~v~ 36 (196)
T d1dlja2 6 AGSGYVGLSLGV-LLSLQNEVTIVDILPSKVD 36 (196)
T ss_dssp ECCSHHHHHHHH-HHTTTSEEEEECSCHHHHH
T ss_pred ECCChhHHHHHH-HHHCCCcEEEEECCHHHHH
Confidence 479999999986 5567999999998876643
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=89.86 E-value=0.67 Score=30.79 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=49.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcC-chh--hhhh---------cCCce------------EEEEcCCCCHHHHHHHhc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKD-KRN--AMES---------FGTYV------------ESMAGDASNKKFLKTALR 64 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~-~~~--~~~~---------~~~~v------------~~v~~Dl~d~~~l~~~~~ 64 (208)
+-|+||+.+.|.+++++.+|.++.-. .+. ..-+ +...+ ++....-.+++++.=.-.
T Consensus 7 GfGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~i~W~~~ 86 (169)
T d1dssg1 7 GFGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPENIPWSKA 86 (169)
T ss_dssp CCSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGGCCHHHH
T ss_pred CCcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHHCCcccc
Confidence 46899999999999999998888642 221 1000 01111 122223346666543445
Q ss_pred CCCEEEEcCCCch-hhhhh---hcCCCeEEEe
Q 028525 65 GVRSIICPSEGFI-SNAGS---LKGVQHVILL 92 (208)
Q Consensus 65 ~~d~vi~~~~~~~-~~a~~---~~gv~~~v~~ 92 (208)
++|+|+=|++-+. .+.++ +.|+|+++..
T Consensus 87 gvD~ViEcTG~f~~~~~~~~hl~~gakkViis 118 (169)
T d1dssg1 87 GAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118 (169)
T ss_dssp TCCEEEECSSSCCSHHHHGGGGTTTCSEEEES
T ss_pred CCCEEEecCceEcCHHHHHHHHhcCCceEeec
Confidence 8999997766442 22222 3589987653
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.72 E-value=0.086 Score=35.89 Aligned_cols=55 Identities=13% Similarity=-0.119 Sum_probs=39.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|..-|.+|.+++|..++..... ..++. .++.++++.+|+|+++
T Consensus 51 G~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~-~~~~~--------~~l~ell~~sDiv~~~ 105 (184)
T d1ygya1 51 GLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ-LGIEL--------LSLDDLLARADFISVH 105 (184)
T ss_dssp CCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH-HTCEE--------CCHHHHHHHCSEEEEC
T ss_pred cccchhHHHHHHhhhccceEEeecCCCChhHHhh-cCcee--------ccHHHHHhhCCEEEEc
Confidence 6899999999999888999999988765532211 12222 2355788889999965
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=89.71 E-value=0.15 Score=29.35 Aligned_cols=46 Identities=11% Similarity=-0.060 Sum_probs=32.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCC
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASN 55 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d 55 (208)
.++|++|+-++.+..+-|+++++++-+++...... ..+++..++++
T Consensus 7 lG~GQLgrMl~~Aa~~LG~~v~vldp~~~~pa~~~--a~dvIT~e~E~ 52 (78)
T d3etja2 7 LGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPF--QQSVITAEIER 52 (78)
T ss_dssp EBCSHHHHHHHHHHGGGTEEEEEECTTSCGGGSCG--GGSEEEESSSC
T ss_pred EcCCHHHHHHHHHHHHcCCEEEEEcCCCCCccccc--ccceEEEeecc
Confidence 47999999999999999999999987654422111 23555555554
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=89.69 E-value=0.46 Score=30.61 Aligned_cols=57 Identities=5% Similarity=0.061 Sum_probs=37.5
Q ss_pred ccCccHHHHHHHHHhCC--CcEEEEEcCc--hh----hhhh-----cCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR--TRIKALVKDK--RN----AMES-----FGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g--~~V~~~~R~~--~~----~~~~-----~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+|.+|+.++..|+.++ .++..++.+. ++ ..++ +.....+..+|+. .++++|+||.+
T Consensus 8 aaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~-------~~~~aDiVvit 77 (142)
T d1o6za1 8 AAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYE-------DTAGSDVVVIT 77 (142)
T ss_dssp TTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGG-------GGTTCSEEEEC
T ss_pred CCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHH-------HhhhcCEEEEe
Confidence 48999999999999987 4688777432 22 1111 2334555555543 36799999976
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.67 E-value=0.46 Score=31.09 Aligned_cols=64 Identities=5% Similarity=-0.038 Sum_probs=40.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCce-EEEEcCCCC-HHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYV-ESMAGDASN-KKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v-~~v~~Dl~d-~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|...+..+...|.+|+++++++.+......-+. .++..+-.| .+.+.+...+.+.+|.+
T Consensus 35 GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~ 100 (166)
T d1llua2 35 GIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVT 100 (166)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEEC
T ss_pred eccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccc
Confidence 57999999999888889999999999877432221222 333222222 34444444566666655
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=89.50 E-value=0.38 Score=32.11 Aligned_cols=85 Identities=6% Similarity=-0.087 Sum_probs=48.7
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCchhhhhhcCCce-EEEEcCCCCHHHHHHH----h--cCCCEEEEcCCC--chh
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDKRNAMESFGTYV-ESMAGDASNKKFLKTA----L--RGVRSIICPSEG--FIS 78 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~v-~~v~~Dl~d~~~l~~~----~--~~~d~vi~~~~~--~~~ 78 (208)
+.|.+|...+..+...|. +|+++++++++......-+. .++...-.+..+..+. . .++|+||.+.++ ...
T Consensus 36 GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~ 115 (182)
T d1vj0a2 36 GAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALL 115 (182)
T ss_dssp CCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHH
T ss_pred CCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEeecCCchhHHH
Confidence 479999999999998996 79999999887432221122 2332222333333222 2 257999987543 223
Q ss_pred hhhhhcC-CCeEEEec
Q 028525 79 NAGSLKG-VQHVILLS 93 (208)
Q Consensus 79 ~a~~~~g-v~~~v~~S 93 (208)
.+.+... -.++++++
T Consensus 116 ~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 116 EGSELLRRGGFYSVAG 131 (182)
T ss_dssp HHHHHEEEEEEEEECC
T ss_pred HHHHHhcCCCEEEEEe
Confidence 3322221 12676665
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=89.34 E-value=0.52 Score=30.40 Aligned_cols=58 Identities=9% Similarity=-0.034 Sum_probs=38.7
Q ss_pred ccCccHHHHHHHHHhCC--CcEEEEEcCchhhhh----h-----cCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR--TRIKALVKDKRNAME----S-----FGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~~----~-----~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|++|++++..|+.++ .++..+++++.+... + +.....+... .|. ++++++|+||.+
T Consensus 8 GaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~--~~~----~~~~daDvVVit 76 (143)
T d1llda1 8 GAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDP----EICRDADMVVIT 76 (143)
T ss_dssp CCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCG----GGGTTCSEEEEC
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecC--CCH----HHhhCCcEEEEe
Confidence 57999999999999888 589999988765321 1 1122333322 222 257789999977
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.14 E-value=0.13 Score=35.23 Aligned_cols=30 Identities=0% Similarity=-0.207 Sum_probs=27.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN 37 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~ 37 (208)
.+.|.+|+.++..++..||+|++++++++.
T Consensus 10 iGaG~mG~~iA~~~a~~G~~V~l~D~~~~~ 39 (192)
T d1f0ya2 10 IGGGLMGAGIAQVAAATGHTVVLVDQTEDI 39 (192)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred ECcCHHHHHHHHHHHhCCCcEEEEECChHH
Confidence 479999999999999999999999998764
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.93 E-value=0.95 Score=29.00 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=41.1
Q ss_pred hhhc-cccCccHHHHHHHHHhCC--CcEEEEEcCchhhhh----------hcCCceEEEE-cCCCCHHHHHHHhcCCCEE
Q 028525 4 MKKM-KRKKMNFRMVILSLIVKR--TRIKALVKDKRNAME----------SFGTYVESMA-GDASNKKFLKTALRGVRSI 69 (208)
Q Consensus 4 ~~~~-~~~G~iG~~l~~~Ll~~g--~~V~~~~R~~~~~~~----------~~~~~v~~v~-~Dl~d~~~l~~~~~~~d~v 69 (208)
||.. .+.|++|+.++..|+.++ .++..+++++++... ..+....+.. .|+ ++++++|+|
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-------~~~~~adiV 73 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-------SLLKGSEII 73 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-------GGGTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-------HHhccccEE
Confidence 4443 357999999999998877 579999988765211 1222233332 233 268899999
Q ss_pred EEc
Q 028525 70 ICP 72 (208)
Q Consensus 70 i~~ 72 (208)
|.+
T Consensus 74 vit 76 (142)
T d1ojua1 74 VVT 76 (142)
T ss_dssp EEC
T ss_pred EEe
Confidence 987
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=88.73 E-value=0.21 Score=31.68 Aligned_cols=26 Identities=8% Similarity=-0.151 Sum_probs=21.8
Q ss_pred ccccCccHHHHHHHHHhCCCcEEEEE
Q 028525 7 MKRKKMNFRMVILSLIVKRTRIKALV 32 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~~V~~~~ 32 (208)
.+.+|+.|+.+.+.+.++++++.+..
T Consensus 6 ~G~~GrMG~~i~~~~~~~~~~l~~~i 31 (128)
T d1vm6a3 6 VGYSGRMGQEIQKVFSEKGHELVLKV 31 (128)
T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred ECCCCHHHHHHHHHHhcCCCeEEEEE
Confidence 45699999999998888999987653
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=88.04 E-value=0.13 Score=34.87 Aligned_cols=30 Identities=10% Similarity=-0.143 Sum_probs=27.1
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRN 37 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~ 37 (208)
.+.|.+|+.++..++..||+|++++++++.
T Consensus 10 iGaG~mG~~iA~~~a~~G~~V~l~D~~~~~ 39 (186)
T d1wdka3 10 LGAGIMGGGIAYQSASKGTPILMKDINEHG 39 (186)
T ss_dssp ECCHHHHHHHHHHHHHTTCCEEEECSSHHH
T ss_pred ECcCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 368999999999999999999999998764
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.97 E-value=0.27 Score=31.49 Aligned_cols=26 Identities=8% Similarity=0.002 Sum_probs=19.9
Q ss_pred ccccCccHHHHHHHHHhC-CCcEEEEE
Q 028525 7 MKRKKMNFRMVILSLIVK-RTRIKALV 32 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~-g~~V~~~~ 32 (208)
.+.+|+.|+.+++.+.+. ++++.+..
T Consensus 5 ~Ga~GrMG~~i~~~i~~~~~~~l~~~~ 31 (135)
T d1yl7a1 5 LGAKGKVGATMVRAVAAADDLTLSAEL 31 (135)
T ss_dssp ETTTSHHHHHHHHHHHHSTTSEEEEEE
T ss_pred ECCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 356999999999988765 57776654
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.87 E-value=0.17 Score=37.00 Aligned_cols=27 Identities=4% Similarity=-0.061 Sum_probs=24.9
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCch
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKR 36 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~ 36 (208)
||..|.+|+++|+.+|++|+.+.+..+
T Consensus 45 SGk~G~alA~~~~~~Ga~V~li~g~~s 71 (290)
T d1p9oa_ 45 SGRRGATSAEAFLAAGYGVLFLYRARS 71 (290)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEEETTS
T ss_pred chHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 999999999999999999999987643
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=87.71 E-value=0.14 Score=34.89 Aligned_cols=53 Identities=4% Similarity=-0.185 Sum_probs=38.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.||+.+++.|..-|.+|..+++....... . . ... +++.++++.+|+|+++
T Consensus 51 G~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~---~-~--~~~-----~~l~ell~~sDii~i~ 103 (188)
T d1sc6a1 51 GYGHIGTQLGILAESLGMYVYFYDIENKLPLG---N-A--TQV-----QHLSDLLNMSDVVSLH 103 (188)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSSCCCCCT---T-C--EEC-----SCHHHHHHHCSEEEEC
T ss_pred ecccchhhhhhhcccccceEeeccccccchhh---h-h--hhh-----hhHHHHHhhccceeec
Confidence 69999999999998889999999876433211 1 1 111 2456788889999965
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.43 E-value=1.2 Score=32.21 Aligned_cols=26 Identities=8% Similarity=-0.272 Sum_probs=23.7
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEc
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVK 33 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R 33 (208)
++-|.+|+++++.|.+.|.+|++++-
T Consensus 42 qGfGnVG~~~A~~L~e~Gakvv~vsD 67 (293)
T d1hwxa1 42 QGFGNVGLHSMRYLHRFGAKCVAVGE 67 (293)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 47999999999999999999999874
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=87.13 E-value=0.13 Score=34.89 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=19.7
Q ss_pred cccCccHHHHHHHHHhCC-CcEEEEE
Q 028525 8 KRKKMNFRMVILSLIVKR-TRIKALV 32 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g-~~V~~~~ 32 (208)
+.||++|+.|++.|.+.- .++..+.
T Consensus 12 GATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 12 GASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp SCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CcccHHHHHHHHHHHhCCCceEEEEe
Confidence 469999999999888763 5666665
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=87.10 E-value=0.11 Score=34.22 Aligned_cols=20 Identities=10% Similarity=-0.175 Sum_probs=16.2
Q ss_pred ccccCccHHHHHHHHHhCCC
Q 028525 7 MKRKKMNFRMVILSLIVKRT 26 (208)
Q Consensus 7 ~~~~G~iG~~l~~~Ll~~g~ 26 (208)
.+.||++|.+|++.|.+..+
T Consensus 7 vGATGyvG~eLirlL~~H~f 26 (154)
T d2gz1a1 7 VGATGAVGAQMIKMLEESTL 26 (154)
T ss_dssp ETTTSHHHHHHHHHHHTCCS
T ss_pred ECCCcHHHHHHHHHHHcCCC
Confidence 36799999999998776654
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=86.86 E-value=0.25 Score=31.17 Aligned_cols=83 Identities=2% Similarity=-0.116 Sum_probs=50.9
Q ss_pred ccCccHHHHHHHHHh-CCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc-CCCEEEEcCCCc----hhhhhh
Q 028525 9 RKKMNFRMVILSLIV-KRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR-GVRSIICPSEGF----ISNAGS 82 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~-~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~-~~d~vi~~~~~~----~~~a~~ 82 (208)
+.|.+|+.|++++.. .+|++.++.-+..+.....-.++.+.. . +.+.+..+ ..+.++.+.+.. +.+.+.
T Consensus 10 GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~--~---~~l~~~~~~~i~iai~~i~~~~~~~I~d~l~ 84 (126)
T d2dt5a2 10 GMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEH--V---DLLPQRVPGRIEIALLTVPREAAQKAADLLV 84 (126)
T ss_dssp CCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEE--G---GGHHHHSTTTCCEEEECSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEec--H---HHHHHHHhhcccEEEEeCCHHHHHHHHHHHH
Confidence 689999999998754 478999987654443211113566653 2 33444444 456666664432 445677
Q ss_pred hcCCCeEEEeceee
Q 028525 83 LKGVQHVILLSQLS 96 (208)
Q Consensus 83 ~~gv~~~v~~Ss~~ 96 (208)
+.|++.+.-.+...
T Consensus 85 ~~gIk~I~~f~~~~ 98 (126)
T d2dt5a2 85 AAGIKGILNFAPVV 98 (126)
T ss_dssp HHTCCEEEECSSSC
T ss_pred HcCCCEEeecCcee
Confidence 78998776655443
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=86.81 E-value=0.47 Score=30.98 Aligned_cols=59 Identities=14% Similarity=0.034 Sum_probs=37.3
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCchhhhh----------hcCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKRNAME----------SFGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~----------~~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.++..|..++ .++..++.+++++.. ..+...... ++- + ..++++++|+|+.+
T Consensus 14 GaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~-~~~-~---~~~~~~~adiVvit 83 (154)
T d1pzga1 14 GSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR-AEY-S---YEAALTGADCVIVT 83 (154)
T ss_dssp CCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEE-EEC-S---HHHHHTTCSEEEEC
T ss_pred CCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEe-ccC-c---hhhhhcCCCeEEEe
Confidence 68999999998888777 488888877654211 111111222 111 1 23578899999976
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=86.71 E-value=0.61 Score=30.98 Aligned_cols=84 Identities=13% Similarity=0.077 Sum_probs=49.0
Q ss_pred ccCccHHHHHHHHHhCCC-cEEEEEcCchhhh--hhcCCceEEEEcCCCC-HHHHHHHhc--CCCEEEEcCCC--chhhh
Q 028525 9 RKKMNFRMVILSLIVKRT-RIKALVKDKRNAM--ESFGTYVESMAGDASN-KKFLKTALR--GVRSIICPSEG--FISNA 80 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~-~V~~~~R~~~~~~--~~~~~~v~~v~~Dl~d-~~~l~~~~~--~~d~vi~~~~~--~~~~a 80 (208)
+.|.+|...+..+...|. +|++.++++.+.. +.++. ..++..+-.+ .+.+.+... ++|+||.+.++ .+..+
T Consensus 35 GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa-~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a 113 (174)
T d1jqba2 35 GIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA-TDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQA 113 (174)
T ss_dssp CCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC-SEEECGGGSCHHHHHHHHTTTSCEEEEEECSSCTTHHHHH
T ss_pred cCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc-cccccccchhHHHHHHHHhhccCcceEEEccCCHHHHHHH
Confidence 479999999998888895 7999998887632 22332 1233222122 444555553 48999987443 23333
Q ss_pred hhhcC-CCeEEEec
Q 028525 81 GSLKG-VQHVILLS 93 (208)
Q Consensus 81 ~~~~g-v~~~v~~S 93 (208)
.+... -.+++.++
T Consensus 114 ~~~~~~~G~iv~~G 127 (174)
T d1jqba2 114 VKMVKPGGIISNIN 127 (174)
T ss_dssp HHHEEEEEEEEECC
T ss_pred HHHHhcCCEEEEEe
Confidence 33221 22666665
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.10 E-value=0.57 Score=30.50 Aligned_cols=67 Identities=7% Similarity=-0.049 Sum_probs=37.6
Q ss_pred chhhhcc-c-cCccHHHHHHHHHhCC---C----cEEEEEcCchh--hhh----h---cCCceEEEEcCCCCHHHHHHHh
Q 028525 2 GPMKKMK-R-KKMNFRMVILSLIVKR---T----RIKALVKDKRN--AME----S---FGTYVESMAGDASNKKFLKTAL 63 (208)
Q Consensus 2 ~~~~~~~-~-~G~iG~~l~~~Ll~~g---~----~V~~~~R~~~~--~~~----~---~~~~v~~v~~Dl~d~~~l~~~~ 63 (208)
-|||+.. + +|.+|++++..|++.+ . ++..++.+..+ ... . .......+..--. ..+++
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~ 77 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDK----EEIAF 77 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESC----HHHHT
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcc----ccccc
Confidence 4888863 4 8999999999888653 1 24444433322 111 1 1112233332222 23578
Q ss_pred cCCCEEEEc
Q 028525 64 RGVRSIICP 72 (208)
Q Consensus 64 ~~~d~vi~~ 72 (208)
+++|+||.+
T Consensus 78 ~~~dvVVit 86 (154)
T d5mdha1 78 KDLDVAILV 86 (154)
T ss_dssp TTCSEEEEC
T ss_pred CCceEEEEe
Confidence 899999976
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=86.08 E-value=0.63 Score=29.87 Aligned_cols=57 Identities=12% Similarity=-0.052 Sum_probs=37.2
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCchhhh----hh------cCCceEEE-EcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKRNAM----ES------FGTYVESM-AGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~----~~------~~~~v~~v-~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.++..|+.++ .++..++.++++.. ++ .+....+. ..|+. .++++|+||.+
T Consensus 8 GaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-------~~~~advvvit 76 (142)
T d1uxja1 8 GAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-------DTANSDVIVVT 76 (142)
T ss_dssp CCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-------GGTTCSEEEEC
T ss_pred CCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-------HhcCCCEEEEe
Confidence 57999999999888776 48888887765421 11 12223333 23333 36789999977
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=85.48 E-value=1.6 Score=27.93 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=35.6
Q ss_pred ccCccHHHHHHHHHh-CC--CcEEEEEcCchh---hhhhc--CC--ceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIV-KR--TRIKALVKDKRN---AMESF--GT--YVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~-~g--~~V~~~~R~~~~---~~~~~--~~--~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
.+|.+|++++..|.. .+ .++..++..+.. ..++. .. .... ...-.+ .++++++|+||++
T Consensus 8 aaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~-~~~~~~----~~~~~~aDvvvit 76 (145)
T d2cmda1 8 AAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKG-FSGEDA----TPALEGADVVLIS 76 (145)
T ss_dssp TTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEE-ECSSCC----HHHHTTCSEEEEC
T ss_pred CCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcE-EEcCCC----ccccCCCCEEEEC
Confidence 389999999987753 33 788888875432 11111 11 1222 222223 3478899999987
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=85.22 E-value=0.15 Score=36.02 Aligned_cols=72 Identities=3% Similarity=-0.116 Sum_probs=44.9
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcC-CceEEEEcCCCCHHHHHHHh-cCCCEEEEc-CCCch-hhhhhh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFG-TYVESMAGDASNKKFLKTAL-RGVRSIICP-SEGFI-SNAGSL 83 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~-~~~d~vi~~-~~~~~-~~a~~~ 83 (208)
++-|.+|+++++.|.+.|.+|++.+.+......... .+.+.+ ++++ .+ ..||+++-| .++.+ .+.+.+
T Consensus 45 qG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-----~~~~---~~~~~cDIl~PcA~~~~I~~~~~~~ 116 (230)
T d1leha1 45 QGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-----APNA---IYGVTCDIFAPCALGAVLNDFTIPQ 116 (230)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-----CGGG---TTTCCCSEEEECSCSCCBSTTHHHH
T ss_pred ECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-----CCcc---cccccccEecccccccccChHHhhc
Confidence 469999999999999999999999877655322211 122222 2332 23 369999955 44433 334444
Q ss_pred cCCC
Q 028525 84 KGVQ 87 (208)
Q Consensus 84 ~gv~ 87 (208)
..++
T Consensus 117 l~ak 120 (230)
T d1leha1 117 LKAK 120 (230)
T ss_dssp CCCS
T ss_pred cCcc
Confidence 4554
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=85.11 E-value=0.4 Score=31.12 Aligned_cols=28 Identities=4% Similarity=-0.112 Sum_probs=25.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCch
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKR 36 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~ 36 (208)
+.|++|..++..|.++|++|+++.|.+.
T Consensus 48 ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 48 DTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp CCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred CCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 5799999999999999999999998753
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=85.03 E-value=0.36 Score=30.11 Aligned_cols=28 Identities=4% Similarity=-0.115 Sum_probs=25.9
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCch
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKR 36 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~ 36 (208)
+.|++|-+++..|.++|.+|+++.|.+.
T Consensus 37 GgG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 37 GGGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CcchhHHHHHHHhhcccceEEEEeeccc
Confidence 6999999999999999999999998754
|
| >d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: 2-methylacyl-CoA racemase Mcr species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.62 E-value=3.2 Score=30.53 Aligned_cols=92 Identities=8% Similarity=0.041 Sum_probs=55.8
Q ss_pred chhhhccc----cCccHHHHHHHHHhCCCcEEEEEcCchh---hhhhcCCceEEEEcCCCCHH---HHHHHhcCCCEEEE
Q 028525 2 GPMKKMKR----KKMNFRMVILSLIVKRTRIKALVKDKRN---AMESFGTYVESMAGDASNKK---FLKTALRGVRSIIC 71 (208)
Q Consensus 2 ~~~~~~~~----~G~iG~~l~~~Ll~~g~~V~~~~R~~~~---~~~~~~~~v~~v~~Dl~d~~---~l~~~~~~~d~vi~ 71 (208)
||+....+ +..-|-...+.|.+.|.+|+=+-+.... .......+=..+..|+.+++ .+.++++.+|+||.
T Consensus 2 gPL~girVld~~~~~agp~~~~~lad~GA~VikvE~p~~~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i~ 81 (359)
T d1x74a1 2 GPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIE 81 (359)
T ss_dssp CTTTTCEEEEECCSTHHHHHHHHHHHTTCEEEEEECC-----CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCCCEEEEcCCchHHHHHHHHHHHhCCEEEEECCCCCCCchhhhhhhCCCeEEEEeCcCHHHHHHHHHHHhhCCEEEe
Confidence 77755542 4444666677777789999988754321 11111234477889998754 45566689999997
Q ss_pred c-CCCch------hhhhhhcCCCeEEEece
Q 028525 72 P-SEGFI------SNAGSLKGVQHVILLSQ 94 (208)
Q Consensus 72 ~-~~~~~------~~a~~~~gv~~~v~~Ss 94 (208)
+ .++.. .+.+++.+ +++||+|-
T Consensus 82 n~~pg~~~~lgl~~~~l~~~n-P~lI~~si 110 (359)
T d1x74a1 82 GYRPGVTERLGLGPEECAKVN-DRLIYARM 110 (359)
T ss_dssp CSCTTHHHHHTCSHHHHHHHC-TTCEEEEE
T ss_pred cCCCCchhhcCCCHHHHHhhc-CCceEEEE
Confidence 7 55542 23344444 35777764
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=83.84 E-value=0.45 Score=30.93 Aligned_cols=32 Identities=6% Similarity=-0.160 Sum_probs=25.8
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAME 40 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~ 40 (208)
.+.|..|+.++++|++.||.+ +..|+.++...
T Consensus 6 IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~ 37 (156)
T d2cvza2 6 IGLGAMGYPMAGHLARRFPTL-VWNRTFEKALR 37 (156)
T ss_dssp ECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHH
T ss_pred EeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHH
Confidence 468999999999999988865 67888776443
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=83.76 E-value=1.3 Score=29.62 Aligned_cols=61 Identities=15% Similarity=0.074 Sum_probs=42.8
Q ss_pred cCccHHHHHHHHHhCCCcEEEEEcCchhh---hhhcCCceEEEEcCCCCHHHHHHHh--cCCCEEEE
Q 028525 10 KKMNFRMVILSLIVKRTRIKALVKDKRNA---MESFGTYVESMAGDASNKKFLKTAL--RGVRSIIC 71 (208)
Q Consensus 10 ~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~---~~~~~~~v~~v~~Dl~d~~~l~~~~--~~~d~vi~ 71 (208)
|=.-|.| ++.+++++-+|++++|++... ......++.++..+..+.+.+...+ ..+|.|+.
T Consensus 26 T~G~GGh-s~~iL~~~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~ 91 (182)
T d1wg8a2 26 TLGGAGH-ARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILA 91 (182)
T ss_dssp TCTTSHH-HHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEE
T ss_pred CCCCcHH-HHHHhcccCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEE
Confidence 3333445 456777777999999998763 3334568999999999977765544 45788874
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=83.56 E-value=0.53 Score=29.33 Aligned_cols=28 Identities=4% Similarity=-0.161 Sum_probs=25.6
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCch
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKR 36 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~ 36 (208)
+.|++|..++..|.+.|++|+++.|.+.
T Consensus 37 GgG~iG~E~A~~l~~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 37 GSGYIGIEAAEAFAKAGKKVTVIDILDR 64 (123)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CChHHHHHHHHHhhccceEEEEEEecCc
Confidence 6999999999999999999999988653
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.48 E-value=1.4 Score=29.40 Aligned_cols=90 Identities=19% Similarity=0.098 Sum_probs=45.4
Q ss_pred ccCccHHHHHHHHHhCCCcEEE-EEcCchhhhh---hcCCceEEEEcCCCC-HHHHHHHh-cCCCEEEEcCCCchhh-hh
Q 028525 9 RKKMNFRMVILSLIVKRTRIKA-LVKDKRNAME---SFGTYVESMAGDASN-KKFLKTAL-RGVRSIICPSEGFISN-AG 81 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~-~~R~~~~~~~---~~~~~v~~v~~Dl~d-~~~l~~~~-~~~d~vi~~~~~~~~~-a~ 81 (208)
++|-+|+..++.+...|.++++ .++++++... ..+. -.++...-.+ .+.+.++. +++|+||.+.++...+ .+
T Consensus 39 aaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga-d~vi~~~~~~~~~~~~~~~~~GvDvv~D~vGg~~~~~~~ 117 (187)
T d1vj1a2 39 AAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF-DAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNTVI 117 (187)
T ss_dssp TTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC-SEEEETTSSCHHHHHHHHCTTCEEEEEESSCHHHHHHHH
T ss_pred CCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc-eEEeeccchhHHHHHHHHhccCceEEEecCCchhHHHHh
Confidence 5899999999988888976544 5555544322 2222 1233222223 33333333 3689999886544322 22
Q ss_pred hhc-CCCeEEEeceeeecc
Q 028525 82 SLK-GVQHVILLSQLSVYR 99 (208)
Q Consensus 82 ~~~-gv~~~v~~Ss~~~~~ 99 (208)
+.. .-.|++.++..+.+.
T Consensus 118 ~~l~~~G~iv~~G~~s~~~ 136 (187)
T d1vj1a2 118 SQMNENSHIILCGQISQYN 136 (187)
T ss_dssp TTEEEEEEEEEC-------
T ss_pred hhccccccEEEeccccccc
Confidence 221 123788776655443
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=83.17 E-value=1.3 Score=28.57 Aligned_cols=58 Identities=10% Similarity=0.025 Sum_probs=36.6
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCchhhhh----h------cCCceEEEEcCCCCHHHHHHHhcCCCEEEEc
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKRNAME----S------FGTYVESMAGDASNKKFLKTALRGVRSIICP 72 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~~----~------~~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~ 72 (208)
+.|.+|+.++..|..++ .++..+++++++... + ......+...+ +. +.++++|+|+.+
T Consensus 10 GaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~----~~~~~advvvit 78 (150)
T d1t2da1 10 GSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TY----DDLAGADVVIVT 78 (150)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CG----GGGTTCSEEEEC
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--cc----cccCCCcEEEEe
Confidence 58999999998777766 588888887754211 1 11223333222 22 356788988876
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.15 E-value=0.41 Score=29.84 Aligned_cols=28 Identities=0% Similarity=-0.234 Sum_probs=25.7
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCch
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKR 36 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~ 36 (208)
+.|.||-.++..|.+.|.+|+++.|.+.
T Consensus 30 G~G~ig~E~A~~l~~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 30 GGGIIGLEMGSVYSRLGSKVTVVEFQPQ 57 (122)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCchHHHHHHHHHhhCcceeEEEeccc
Confidence 6999999999999999999999998753
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.07 E-value=0.49 Score=29.08 Aligned_cols=28 Identities=7% Similarity=-0.216 Sum_probs=25.8
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCch
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKR 36 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~ 36 (208)
+.|++|-.++..|.+.|.+|+++.|.+.
T Consensus 29 GgG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 29 GGGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCCccceeeeeeecccccEEEEEEecce
Confidence 6999999999999999999999998764
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.06 E-value=3.1 Score=27.93 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=24.3
Q ss_pred CCCHHHHHHHhcCCCEEEEcCCCch----hhhhhhcCCCeEEE
Q 028525 53 ASNKKFLKTALRGVRSIICPSEGFI----SNAGSLKGVQHVIL 91 (208)
Q Consensus 53 l~d~~~l~~~~~~~d~vi~~~~~~~----~~a~~~~gv~~~v~ 91 (208)
-.||+++.=.-.++|+|+-|++-+. ...--.+|+++++.
T Consensus 91 ~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkVii 133 (190)
T d1k3ta1 91 QRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVI 133 (190)
T ss_dssp CSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred CCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceeee
Confidence 3456665444458999998866442 12223468999875
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=82.97 E-value=0.41 Score=29.78 Aligned_cols=27 Identities=7% Similarity=-0.113 Sum_probs=25.1
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDK 35 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~ 35 (208)
+.|++|-.++..|.+.|++|+++.|.+
T Consensus 39 GgG~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 39 GGGFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp ECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcHHHHHHHHHhhcccceEEEEeccc
Confidence 699999999999999999999998764
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=82.86 E-value=0.41 Score=33.26 Aligned_cols=27 Identities=19% Similarity=0.027 Sum_probs=25.2
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCc
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDK 35 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~ 35 (208)
+-|..|...+.+|.++|++|+++.|+.
T Consensus 13 GaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 13 GSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 699999999999999999999999864
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=82.70 E-value=0.28 Score=32.57 Aligned_cols=86 Identities=9% Similarity=-0.074 Sum_probs=49.4
Q ss_pred cccCccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHh-----cCCCEEEEcCCCch-hhhh
Q 028525 8 KRKKMNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTAL-----RGVRSIICPSEGFI-SNAG 81 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~-----~~~d~vi~~~~~~~-~~a~ 81 (208)
..+|-+|...++.+...|.+|++.+|++++......-+.+.+. |..| ...+.+ +++|.||.+.++.. ....
T Consensus 31 gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi-~~~~--~~~~~~~~~~~~gvd~vid~vgg~~~~~~~ 107 (167)
T d1tt7a2 31 GATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVI-SRED--VYDGTLKALSKQQWQGAVDPVGGKQLASLL 107 (167)
T ss_dssp STTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEE-EHHH--HCSSCCCSSCCCCEEEEEESCCTHHHHHHH
T ss_pred CCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceE-eccc--hhchhhhcccCCCceEEEecCcHHHHHHHH
Confidence 3599999999998888899999999998874333222233332 2221 111111 35688887755443 2222
Q ss_pred hhcC-CCeEEEeceee
Q 028525 82 SLKG-VQHVILLSQLS 96 (208)
Q Consensus 82 ~~~g-v~~~v~~Ss~~ 96 (208)
+... -.++|.++..+
T Consensus 108 ~~l~~~G~iv~~G~~~ 123 (167)
T d1tt7a2 108 SKIQYGGSVAVSGLTG 123 (167)
T ss_dssp TTEEEEEEEEECCCSS
T ss_pred HHhccCceEEEeeccC
Confidence 2211 12676665443
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=82.23 E-value=0.058 Score=35.99 Aligned_cols=73 Identities=10% Similarity=-0.093 Sum_probs=41.0
Q ss_pred cccCccHHHHHHHHHhC-CCcEEEEE-cCchhh-hh----hc---CCceEEEEcCCCCHHHHHHHhcCCCEEEEc-CCCc
Q 028525 8 KRKKMNFRMVILSLIVK-RTRIKALV-KDKRNA-ME----SF---GTYVESMAGDASNKKFLKTALRGVRSIICP-SEGF 76 (208)
Q Consensus 8 ~~~G~iG~~l~~~Ll~~-g~~V~~~~-R~~~~~-~~----~~---~~~v~~v~~Dl~d~~~l~~~~~~~d~vi~~-~~~~ 76 (208)
+.+|+.|+.|++.+.+. +.++.+.. |..+.. .. .. ..++.+ .-|+. ..++.+|++|-. .+..
T Consensus 11 Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~-~~~~~------~~~~~~DViIDFs~p~~ 83 (162)
T d1diha1 11 GAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV-QSSLD------AVKDDFDVFIDFTRPEG 83 (162)
T ss_dssp TTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE-ESCST------TTTTSCSEEEECSCHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCcee-eccHH------HHhcccceEEEeccHHH
Confidence 45999999999999886 56766554 443321 11 11 111222 22332 356678999855 4433
Q ss_pred ---hhhhhhhcCCC
Q 028525 77 ---ISNAGSLKGVQ 87 (208)
Q Consensus 77 ---~~~a~~~~gv~ 87 (208)
..+.+.+.+++
T Consensus 84 ~~~~~~~a~~~~~~ 97 (162)
T d1diha1 84 TLNHLAFCRQHGKG 97 (162)
T ss_dssp HHHHHHHHHHTTCE
T ss_pred HHHHHHHHHhccce
Confidence 34456666764
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.13 E-value=0.57 Score=29.14 Aligned_cols=26 Identities=8% Similarity=-0.129 Sum_probs=24.5
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcC
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKD 34 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~ 34 (208)
+.|.||-+++..|.+.|.+|+++.|+
T Consensus 27 GgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 27 GASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCccHHHHHHHHhhcCCeEEEEEec
Confidence 69999999999999999999999875
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=81.94 E-value=1.9 Score=31.83 Aligned_cols=111 Identities=8% Similarity=-0.061 Sum_probs=66.3
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCchhhh------hhc-CCceEEEEcCCCCHH-HHHHHhcCCCEEEEcCC--Cc--
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKRNAM------ESF-GTYVESMAGDASNKK-FLKTALRGVRSIICPSE--GF-- 76 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~~~~------~~~-~~~v~~v~~Dl~d~~-~l~~~~~~~d~vi~~~~--~~-- 76 (208)
++|.+|..|+ +++.+|+++.-+++... ... -.+++++.+|..+.- .........|+||.-.| |.
T Consensus 222 G~G~fsl~La----~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~ 297 (358)
T d1uwva2 222 GMGNFTLPLA----TQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG 297 (358)
T ss_dssp TTTTTHHHHH----TTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCHH
T ss_pred cccccchhcc----ccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeCCCCccHHH
Confidence 5888887765 46789999987765421 111 247899999887622 12222345698887622 22
Q ss_pred hhhhhhhcCCCeEEEeceeeeccCCCCcccccchhHHHhHHHHHHHHHhcCCCEEEEecccccc
Q 028525 77 ISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQN 140 (208)
Q Consensus 77 ~~~a~~~~gv~~~v~~Ss~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~tivRp~~~~~ 140 (208)
....+.+.+.+++||+|-- | ..+++.. ..|.+.|+...-++|-.++.
T Consensus 298 ~~~~l~~~~~~~ivYVSCn----------p------~TlaRDl-~~l~~~gy~l~~i~~~D~FP 344 (358)
T d1uwva2 298 VMQQIIKLEPIRIVYVSCN----------P------ATLARDS-EALLKAGYTIARLAMLDMFP 344 (358)
T ss_dssp HHHHHHHHCCSEEEEEESC----------H------HHHHHHH-HHHHHTTCEEEEEEEECCST
T ss_pred HHHHHHHcCCCEEEEEeCC----------H------HHHHHHH-HHHHHCCCeEeEEEEEecCC
Confidence 3444556688999999841 1 1122222 23445678888887765543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=81.52 E-value=3.4 Score=27.10 Aligned_cols=87 Identities=10% Similarity=-0.044 Sum_probs=52.7
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCchhhh--hhcCCceEEEEcCCCC-HHHHHHHh--cCCCEEEEcCCCc--hhhh
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKRNAM--ESFGTYVESMAGDASN-KKFLKTAL--RGVRSIICPSEGF--ISNA 80 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~~~--~~~~~~v~~v~~Dl~d-~~~l~~~~--~~~d~vi~~~~~~--~~~a 80 (208)
+.|-+|...+..+...| .+|+++++++++.. ..++....+-.-|-++ .+.+.+.. .++|++|.+.++. ...+
T Consensus 37 G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a 116 (176)
T d1d1ta2 37 GLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDA 116 (176)
T ss_dssp CCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHH
T ss_pred CCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCCchHHHHHH
Confidence 58999999999999998 57999999988843 2233322111122222 34444444 4689999885543 3333
Q ss_pred hhhc--CCCeEEEecee
Q 028525 81 GSLK--GVQHVILLSQL 95 (208)
Q Consensus 81 ~~~~--gv~~~v~~Ss~ 95 (208)
.... +-.++|+++..
T Consensus 117 ~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 117 LASCHMNYGTSVVVGVP 133 (176)
T ss_dssp HTTSCTTTCEEEECSCC
T ss_pred HHHhhcCCeEEEEEEcc
Confidence 3322 33477777643
|
| >d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Formyl-CoA transferase species: Oxalobacter formigenes [TaxId: 847]
Probab=81.30 E-value=5.1 Score=30.11 Aligned_cols=94 Identities=11% Similarity=0.084 Sum_probs=58.4
Q ss_pred Cchhhhcc---ccCcc-HHHHHHHHHhCCCcEEEEEcCchh--h--------------hhhcCCceEEEEcCCCCHH---
Q 028525 1 MGPMKKMK---RKKMN-FRMVILSLIVKRTRIKALVKDKRN--A--------------MESFGTYVESMAGDASNKK--- 57 (208)
Q Consensus 1 ~~~~~~~~---~~G~i-G~~l~~~Ll~~g~~V~~~~R~~~~--~--------------~~~~~~~v~~v~~Dl~d~~--- 57 (208)
|.|+.... -+..+ |-...+.|.+-|.+|+=+-+.... . ....+.+=+-+..||.+++
T Consensus 1 ~~PL~GirVld~~~~~agp~~~~~LadlGAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~ 80 (427)
T d2vjma1 1 TKPLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGKE 80 (427)
T ss_dssp CCTTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCSGGGGSSCSSTTSCCHHHHTTCSSCEEEECCTTSHHHHH
T ss_pred CCCCCCCEEEEcCChhHHHHHHHHHHHhCCeEEEECCCCCCCcccccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHH
Confidence 45665543 35545 666677777789999999864210 0 1112224467889999866
Q ss_pred HHHHHhcCCCEEEEc-CCCch------hhhhhhcCCCeEEEecee
Q 028525 58 FLKTALRGVRSIICP-SEGFI------SNAGSLKGVQHVILLSQL 95 (208)
Q Consensus 58 ~l~~~~~~~d~vi~~-~~~~~------~~a~~~~gv~~~v~~Ss~ 95 (208)
.+.++++.+|+||.+ .++.. .+.+++.+- ++||+|..
T Consensus 81 ~~~~Lv~~aDv~i~n~~pg~~~rlGL~~~~l~~~NP-~LI~~sis 124 (427)
T d2vjma1 81 LLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNP-RVILASVK 124 (427)
T ss_dssp HHHHHHHHCSEEEECCSTTHHHHTTCCHHHHHHHCT-TCEEEEEE
T ss_pred HHHHHHHhCCeeeECCCcchHHHcCCCchhhhhhCC-ccceeeee
Confidence 466777899999977 55442 334444443 57787643
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=81.22 E-value=0.54 Score=28.92 Aligned_cols=28 Identities=0% Similarity=-0.389 Sum_probs=25.7
Q ss_pred ccCccHHHHHHHHHhCCCcEEEEEcCch
Q 028525 9 RKKMNFRMVILSLIVKRTRIKALVKDKR 36 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g~~V~~~~R~~~ 36 (208)
+.|++|..++..|.+.|++|+++.|.+.
T Consensus 28 GgG~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 28 GAGYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCChhhHHHHHHhhccccEEEEEeecch
Confidence 6999999999999999999999998753
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=80.64 E-value=4.2 Score=26.65 Aligned_cols=85 Identities=16% Similarity=0.076 Sum_probs=48.7
Q ss_pred ccCccHHHHHHHHHhCC-CcEEEEEcCchh--hhh-h--------cCCceE------------EEEcCCCCHHHHHHHhc
Q 028525 9 RKKMNFRMVILSLIVKR-TRIKALVKDKRN--AME-S--------FGTYVE------------SMAGDASNKKFLKTALR 64 (208)
Q Consensus 9 ~~G~iG~~l~~~Ll~~g-~~V~~~~R~~~~--~~~-~--------~~~~v~------------~v~~Dl~d~~~l~~~~~ 64 (208)
+=|+||+.+.|.++++. .+|.++.-..+. ..- + +...++ +-...-.|++.+.=.-.
T Consensus 8 GFGRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~~i~W~~~ 87 (166)
T d1gado1 8 GFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEV 87 (166)
T ss_dssp CCSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGGGCHHHH
T ss_pred CCcHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChHHCCcccc
Confidence 47899999999999885 777777643221 000 0 011121 22223346666543344
Q ss_pred CCCEEEEcCCCchh-h---hhhhcCCCeEEEece
Q 028525 65 GVRSIICPSEGFIS-N---AGSLKGVQHVILLSQ 94 (208)
Q Consensus 65 ~~d~vi~~~~~~~~-~---a~~~~gv~~~v~~Ss 94 (208)
++|+|+-|++-+.. + .--..|+|+++. |.
T Consensus 88 gvDiViEcTG~f~t~~~~~~hl~~gakkVii-Sa 120 (166)
T d1gado1 88 GVDVVAEATGLFLTDETARKHITAGAKKVVM-TG 120 (166)
T ss_dssp TCSEEEECSSSCCSHHHHTHHHHTTCSEEEE-SS
T ss_pred CCCEEEEccccccCHHHHHHHhcCCCceEEe-ec
Confidence 89999988664421 2 223468999764 53
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=80.37 E-value=4.6 Score=24.90 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=50.2
Q ss_pred ccHHHHHHHHHhCCCcEEEEEcCchhhhhhcCCceEEEEcCCCCHHHHHHHhc--CCCEEEEcCCCc----hhhhhhhcC
Q 028525 12 MNFRMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTALR--GVRSIICPSEGF----ISNAGSLKG 85 (208)
Q Consensus 12 ~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~--~~d~vi~~~~~~----~~~a~~~~g 85 (208)
+.+.+.+++|.+.|++++.+.-++........ -..-+..+-...+.+.+.++ ..|.|+...+|. +...+.+.|
T Consensus 25 y~~~~a~~aLk~~g~~~IliN~NPeTVstd~d-~aD~lYfeplt~e~v~~Ii~~E~p~~ii~~~GGQtalnla~~L~~~g 103 (121)
T d1a9xa4 25 YCCVHASLALREDGYETIMVNCNPETVSTDYD-TSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAG 103 (121)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCTTSSTTSTT-SSSEEECCCCSHHHHHHHHHHHCCSEEECSSSTHHHHTTHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCeEEEEecChhhhhcChh-hcCceEEccCCHHHHHHHHHHhCCCEEEeehhhhhHHHHHHHHHHcC
Confidence 56889999999999999999988876543322 12333444445777777764 789998764443 233445667
Q ss_pred CC
Q 028525 86 VQ 87 (208)
Q Consensus 86 v~ 87 (208)
++
T Consensus 104 v~ 105 (121)
T d1a9xa4 104 VP 105 (121)
T ss_dssp CC
T ss_pred Cc
Confidence 64
|