Citrus Sinensis ID: 028547
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 207 | 2.2.26 [Sep-21-2011] | |||||||
| A5PK19 | 699 | Methyltransferase-like pr | yes | no | 0.734 | 0.217 | 0.386 | 5e-25 | |
| Q8N6R0 | 699 | Methyltransferase-like pr | no | no | 0.734 | 0.217 | 0.379 | 2e-24 | |
| Q91YR5 | 698 | Methyltransferase-like pr | no | no | 0.734 | 0.217 | 0.360 | 2e-23 | |
| O60344 | 883 | Endothelin-converting enz | no | no | 0.574 | 0.134 | 0.447 | 1e-22 | |
| Q80Z60 | 881 | Endothelin-converting enz | no | no | 0.570 | 0.133 | 0.434 | 9e-22 | |
| Q10711 | 883 | Endothelin-converting enz | no | no | 0.536 | 0.125 | 0.435 | 4e-21 | |
| A5WVX1 | 690 | Methyltransferase-like pr | no | no | 0.830 | 0.249 | 0.327 | 1e-20 | |
| Q6NTR1 | 693 | Methyltransferase-like pr | N/A | no | 0.777 | 0.232 | 0.304 | 1e-19 | |
| Q9VIK9 | 673 | Methyltransferase-like pr | yes | no | 0.719 | 0.221 | 0.331 | 5e-19 | |
| Q29LW1 | 673 | Methyltransferase-like pr | yes | no | 0.719 | 0.221 | 0.337 | 6e-18 |
| >sp|A5PK19|MET13_BOVIN Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 96/158 (60%), Gaps = 6/158 (3%)
Query: 6 TTQAYGEPWYWDNRYAHE-SGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEG 64
+++ +G YW+ + F+WY Y L ++ Y+ +++L+VGCGNS SE
Sbjct: 7 SSKEFGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPR-EKVLVVGCGNSELSEQ 65
Query: 65 MVDDGYEDVVNVDISSVVIEAMMKK-YSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123
+ D GY+D+VN+DIS VVI+ M ++ S RP++ ++KMD+ QM EF SF V+DKGTL
Sbjct: 66 LYDVGYQDIVNIDISEVVIKQMKERNASRRPRMSFLKMDMTQM-EFPDASFQVVLDKGTL 124
Query: 124 DSLLCGSNSR--QNATQMLKEVWRVLKDKGVYILVTYG 159
D++L + Q +ML EV RVL+ G Y+ ++
Sbjct: 125 DAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLA 162
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Bos taurus (taxid: 9913) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8N6R0|MET13_HUMAN Methyltransferase-like protein 13 OS=Homo sapiens GN=METTL13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 94/158 (59%), Gaps = 6/158 (3%)
Query: 6 TTQAYGEPWYWDNRYAHE-SGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEG 64
+++ +G YW+ + F+WY Y L ++ Y+ +++L++GCGNS SE
Sbjct: 7 SSREFGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPR-EKVLVIGCGNSELSEQ 65
Query: 65 MVDDGYEDVVNVDISSVVIEAMMK-KYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123
+ D GY D+VN+DIS VVI+ M + + RPQ+ ++KMD+ QM EF SF V+DKGTL
Sbjct: 66 LYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQM-EFPDASFQVVLDKGTL 124
Query: 124 DSLLCGSNSR--QNATQMLKEVWRVLKDKGVYILVTYG 159
D++L + Q +ML EV RVL+ G Y+ ++
Sbjct: 125 DAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLA 162
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q91YR5|MET13_MOUSE Methyltransferase-like protein 13 OS=Mus musculus GN=Mettl13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 95/158 (60%), Gaps = 6/158 (3%)
Query: 6 TTQAYGEPWYWDNRYAHE-SGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEG 64
+++ +G YW+ + F+WY Y L ++ Y+ +++L++GCGNS SE
Sbjct: 7 SSKEFGSADYWEKFFQQRGKTAFEWYGTYLELCEVLHKYIKPK-EKVLVIGCGNSELSEQ 65
Query: 65 MVDDGYEDVVNVDISSVVIEAMMKKY-SNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123
+ D GY+D+VN+DIS VVI+ M ++ S RP + ++KMD+ Q+ EF +F V+DKGTL
Sbjct: 66 LYDVGYQDIVNIDISEVVIKQMKERNGSRRPHMSFLKMDMTQL-EFPDATFQVVLDKGTL 124
Query: 124 DSLLCGSN--SRQNATQMLKEVWRVLKDKGVYILVTYG 159
D++L + + +ML EV RVL+ G Y+ ++
Sbjct: 125 DAVLTDEEEVTLRQVDRMLAEVGRVLQVGGRYLCISLA 162
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Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O60344|ECE2_HUMAN Endothelin-converting enzyme 2 OS=Homo sapiens GN=ECE2 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 81/123 (65%), Gaps = 4/123 (3%)
Query: 9 AYGEPWYWDNRY--AHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMV 66
Y E YWD RY A +S P+DW+ + S L++ + RIL++GCGNSA S +
Sbjct: 19 GYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPEL-RPEDRILVLGCGNSALSYELF 77
Query: 67 DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126
G+ +V +VD SSVV+ AM ++++ PQL++ MDVR++D F + SFD V++KGTLD+L
Sbjct: 78 LGGFPNVTSVDYSSVVVAAMQARHAHVPQLRWETMDVRKLD-FPSASFDVVLEKGTLDAL 136
Query: 127 LCG 129
L G
Sbjct: 137 LAG 139
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|Q80Z60|ECE2_MOUSE Endothelin-converting enzyme 2 OS=Mus musculus GN=Ece2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 80/122 (65%), Gaps = 4/122 (3%)
Query: 10 YGEPWYWDNRY--AHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVD 67
Y + YWD RY A +SGP++W+ + S L++ + RIL++GCGNSA S +
Sbjct: 20 YRQVQYWDQRYKDAADSGPYEWFGDFASFRALLEPEL-CPEDRILVLGCGNSALSYELFL 78
Query: 68 DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127
G+ +V +VD S VV+ AM +Y++ P L++ MDVR +D F +GSFD V++KGTLD++L
Sbjct: 79 GGFPNVTSVDYSPVVVAAMQVRYAHVPSLRWETMDVRALD-FPSGSFDVVLEKGTLDAML 137
Query: 128 CG 129
G
Sbjct: 138 AG 139
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Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|Q10711|ECE2_BOVIN Endothelin-converting enzyme 2 OS=Bos taurus GN=ECE2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 78/131 (59%), Gaps = 20/131 (15%)
Query: 9 AYGEPWYWDNRY--AHESGPFDWYQKY--------PSLAPLIKLYVPSHHQRILIVGCGN 58
Y E YWD RY A +S P++W+ + P L PL RIL++GCGN
Sbjct: 19 GYREVQYWDQRYQGAADSAPYEWFGDFSCFRDLLEPELRPL---------DRILVLGCGN 69
Query: 59 SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVV 118
SA S + G+ DV +VD SSVV+ AM +Y++ P L++ MDVR + F +GSFD V+
Sbjct: 70 SALSYELFLGGFPDVTSVDYSSVVVAAMRARYAHVPTLRWETMDVRALG-FPSGSFDVVL 128
Query: 119 DKGTLDSLLCG 129
+KGTLD+LL G
Sbjct: 129 EKGTLDALLTG 139
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|A5WVX1|MET13_DANRE Methyltransferase-like protein 13 OS=Danio rerio GN=mettl13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 8/180 (4%)
Query: 6 TTQAYGEPWYWDNRYAHESG--PFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSE 63
T + + YW+ R+ + G F+WY Y SL ++ Y+ ++L+VGCGNS SE
Sbjct: 7 TAEEFSSADYWE-RFFRKRGEKAFEWYGDYNSLCGVLHKYIKPR-DKVLVVGCGNSELSE 64
Query: 64 GMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122
+ D GY + N+DIS V+ M ++ + RP L + ++D Q F++GSF +DKGT
Sbjct: 65 QLYDVGYRQLTNIDISETVVSHMNQRNAERRPDLSFQQLDATQTG-FESGSFQVTLDKGT 123
Query: 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP-IYRLGMLRDSCSWNIKLHVI 181
LD++ + A +ML EV RVL G Y+ +T + +L + W +++H +
Sbjct: 124 LDAMASEEDGAL-AGRMLAEVGRVLAVGGRYVCITLAQEHVIKLAVEHFVKGWAVRVHCL 182
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Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6NTR1|MET13_XENLA Methyltransferase-like protein 13 OS=Xenopus laevis GN=mettl13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 23/184 (12%)
Query: 6 TTQAYGEPWYWDNRYAHE-SGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEG 64
+++ + P YW+ + F+WY Y L L+ Y+ ++ +VGCGNS SE
Sbjct: 7 SSKEFAAPEYWEQFFRRRGERAFEWYGGYLELCGLLHKYIKPR-DKVFVVGCGNSELSEQ 65
Query: 65 MVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123
+ D G +++ N+D+S VVI M ++ SN RP + + MD Q F F +V+DKGTL
Sbjct: 66 LYDAGCQNLTNIDVSEVVIRQMNERNSNRRPNMTFQVMDATQTT-FDDSCFQAVLDKGTL 124
Query: 124 DSLLCGSN--SRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181
D+++ ++ + + A +++ E+ RVL G ++ V+ + HV+
Sbjct: 125 DAIMTDTDKGTLETADKLMSEIGRVLTCGGRFLCVSLA-----------------QAHVL 167
Query: 182 EKLV 185
EKLV
Sbjct: 168 EKLV 171
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Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9VIK9|MET13_DROME Methyltransferase-like protein 13 OS=Drosophila melanogaster GN=CG2614 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 8/157 (5%)
Query: 6 TTQAYGEPWYWDNRYAHESG--PFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSE 63
T + + + YW N + + G F+WY +Y L I Y+ RIL++GCGNS S
Sbjct: 7 TREEFAQTDYW-NEFFKKRGEKAFEWYGEYLELCDQIHKYIKPA-DRILMLGCGNSKLSM 64
Query: 64 GMVDDGYEDVVNVDISSVVIEAMMK-KYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122
M D G+ D+ N+DIS + ++ M++ +RP++K+++MD M F SF +DKGT
Sbjct: 65 DMYDTGFRDITNIDISPIAVKKMLELNAKSRPEMKFLQMDATAM-TFPDESFSVSLDKGT 123
Query: 123 LDSLLCGS--NSRQNATQMLKEVWRVLKDKGVYILVT 157
LD+L +R KE+ R +++ G Y+ ++
Sbjct: 124 LDALFADDEPETRAVVENYFKEILRTMRNGGRYVGIS 160
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Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q29LW1|MTE13_DROPS Methyltransferase-like protein 13 OS=Drosophila pseudoobscura pseudoobscura GN=GA15401 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 8/157 (5%)
Query: 6 TTQAYGEPWYWDNRYAHESG--PFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSE 63
T + + + YW N + + G F+WY +Y L I Y+ +IL++GCGNS S
Sbjct: 7 TREEFAQTDYW-NEFFKKRGEKAFEWYGEYLDLCDHIHKYIKPV-DKILMLGCGNSKLSM 64
Query: 64 GMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122
M D Y D+ N+DIS V ++ M+++ + RP +K+++MD M F SF +DKGT
Sbjct: 65 DMYDSEYRDITNIDISPVAVKKMLEQNARTRPDMKFLQMDATAMT-FPDESFSVALDKGT 123
Query: 123 LDSLLCGSNSRQNAT--QMLKEVWRVLKDKGVYILVT 157
LD+L A KE+ R +++ G Y V+
Sbjct: 124 LDALFVDDAPETKAVVENYFKEILRTMRNGGRYFCVS 160
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Drosophila pseudoobscura pseudoobscura (taxid: 46245) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 207 | ||||||
| 255556536 | 243 | S-adenosylmethionine-dependent methyltra | 1.0 | 0.851 | 0.798 | 1e-96 | |
| 224112064 | 241 | predicted protein [Populus trichocarpa] | 0.990 | 0.850 | 0.776 | 2e-92 | |
| 225432153 | 230 | PREDICTED: S-adenosyl-L-methionine-depen | 0.995 | 0.895 | 0.753 | 4e-90 | |
| 388515731 | 233 | unknown [Lotus japonicus] | 0.985 | 0.875 | 0.766 | 7e-90 | |
| 357449219 | 236 | Methyltransferase-like protein [Medicago | 0.985 | 0.864 | 0.737 | 3e-86 | |
| 297834650 | 239 | hypothetical protein ARALYDRAFT_898077 [ | 1.0 | 0.866 | 0.705 | 3e-86 | |
| 388519797 | 236 | unknown [Medicago truncatula] | 0.985 | 0.864 | 0.737 | 3e-86 | |
| 356556153 | 236 | PREDICTED: methyltransferase-like protei | 0.985 | 0.864 | 0.718 | 2e-85 | |
| 18401485 | 239 | S-adenosyl-L-methionine-dependent methyl | 1.0 | 0.866 | 0.695 | 3e-85 | |
| 217072540 | 236 | unknown [Medicago truncatula] | 0.985 | 0.864 | 0.728 | 3e-84 |
| >gi|255556536|ref|XP_002519302.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223541617|gb|EEF43166.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 166/208 (79%), Positives = 188/208 (90%), Gaps = 1/208 (0%)
Query: 1 MTMGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQ-RILIVGCGNS 59
MTMGT+TQAYGE WYWDNRYA+ESGPFDWYQKY SLAPLI LY+P HH RIL+VGCGNS
Sbjct: 1 MTMGTSTQAYGESWYWDNRYANESGPFDWYQKYSSLAPLINLYIPRHHHPRILVVGCGNS 60
Query: 60 AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVD 119
AFS+GMVDDGY+DVVN+DISSVVIEAM KYSNRPQLKYI+MDVR+M FQTGSFD+V+D
Sbjct: 61 AFSDGMVDDGYDDVVNIDISSVVIEAMNNKYSNRPQLKYIQMDVREMSAFQTGSFDAVID 120
Query: 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLH 179
KGTLDS+LCG+NSRQNAT ML++VWRVLKDKGVYILVTYGAP+YRL +L++SC W IKLH
Sbjct: 121 KGTLDSILCGNNSRQNATLMLEDVWRVLKDKGVYILVTYGAPVYRLCLLKESCLWTIKLH 180
Query: 180 VIEKLVVEEKSGHPIWELTNPVPLENDG 207
VIEKL+ S HP+WELTNPVPL +DG
Sbjct: 181 VIEKLLSGGDSEHPVWELTNPVPLNDDG 208
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112064|ref|XP_002316072.1| predicted protein [Populus trichocarpa] gi|222865112|gb|EEF02243.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 160/206 (77%), Positives = 184/206 (89%), Gaps = 1/206 (0%)
Query: 3 MGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSH-HQRILIVGCGNSAF 61
MGT+TQAYGEPWYWDNRY+ ESGPFDWYQKYPSLAPLI LY+P H H RIL+VGCGNSAF
Sbjct: 1 MGTSTQAYGEPWYWDNRYSSESGPFDWYQKYPSLAPLINLYIPRHVHPRILVVGCGNSAF 60
Query: 62 SEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121
SEGMV DGYEDVVN+DISSVVIEAM KKYSN PQLKYI MDVR M EFQ+GSF++V+DKG
Sbjct: 61 SEGMVSDGYEDVVNIDISSVVIEAMKKKYSNHPQLKYIGMDVRDMSEFQSGSFNAVIDKG 120
Query: 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181
TLDS+LCG++SR+NA +MLKEVWRVLKD GVYILVTYGAP+YRL +L DSCSW IKLHVI
Sbjct: 121 TLDSILCGNDSRKNAPKMLKEVWRVLKDNGVYILVTYGAPLYRLQLLGDSCSWRIKLHVI 180
Query: 182 EKLVVEEKSGHPIWELTNPVPLENDG 207
+KL+ +E S HP+ EL NPV ++++G
Sbjct: 181 DKLLSDEGSEHPVQELMNPVSIDDNG 206
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432153|ref|XP_002265997.1| PREDICTED: S-adenosyl-L-methionine-dependent methyltransferase-like [Vitis vinifera] gi|297736798|emb|CBI25999.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 336 bits (861), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 156/207 (75%), Positives = 183/207 (88%), Gaps = 1/207 (0%)
Query: 1 MTMGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSA 60
M MG T QAYGEP YWD RY+HESGPFDWYQKY +LAPL+ LY+P HH R+L+VGCGNSA
Sbjct: 1 MRMGRTMQAYGEPSYWDERYSHESGPFDWYQKYNALAPLLHLYIPLHH-RVLVVGCGNSA 59
Query: 61 FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120
FSEGMV+DGY++VVN+DISSVVI+AM +KYS+RPQLKYI+MDV M FQTGSFD+VVDK
Sbjct: 60 FSEGMVNDGYKEVVNIDISSVVIQAMQRKYSDRPQLKYIRMDVLDMSGFQTGSFDAVVDK 119
Query: 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHV 180
GTLDSLLCG+NSRQ A +MLKEV RVLK+KGVY+L+TYGAPIYRL +LRDSCSW IKLHV
Sbjct: 120 GTLDSLLCGNNSRQLAVKMLKEVERVLKNKGVYMLITYGAPIYRLRLLRDSCSWTIKLHV 179
Query: 181 IEKLVVEEKSGHPIWELTNPVPLENDG 207
IEK ++E K+ H WELTNPVPL+++G
Sbjct: 180 IEKFMLEAKTEHQTWELTNPVPLDDEG 206
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388515731|gb|AFK45927.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 335 bits (859), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 158/206 (76%), Positives = 180/206 (87%), Gaps = 2/206 (0%)
Query: 3 MGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFS 62
M T TQAYGE WYWDNRY +E GPFDWYQKY +LAP+I LYVP +H IL+VG GNSAFS
Sbjct: 1 MATGTQAYGESWYWDNRYTNEPGPFDWYQKYITLAPIINLYVPQNHS-ILVVGSGNSAFS 59
Query: 63 EGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121
EG+VD+G Y DVVNVDISSVVIEAM KY +RPQLKY+KMDVR M F++GSF SV+DKG
Sbjct: 60 EGLVDEGGYSDVVNVDISSVVIEAMQNKYKDRPQLKYVKMDVRDMSAFESGSFGSVIDKG 119
Query: 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181
TLDS+LCGSNSRQNAT+ML+EVWRVLKDKGVYILVTYGAP+YRL +L++SCSW+IKLHVI
Sbjct: 120 TLDSILCGSNSRQNATEMLEEVWRVLKDKGVYILVTYGAPLYRLRLLKESCSWSIKLHVI 179
Query: 182 EKLVVEEKSGHPIWELTNPVPLENDG 207
EKL EEKS HP+WELT PVPL +DG
Sbjct: 180 EKLASEEKSDHPLWELTKPVPLNDDG 205
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357449219|ref|XP_003594886.1| Methyltransferase-like protein [Medicago truncatula] gi|355483934|gb|AES65137.1| Methyltransferase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 152/206 (73%), Positives = 178/206 (86%), Gaps = 2/206 (0%)
Query: 3 MGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFS 62
M T TQAYGE WYWDNRY +E GPFDWYQKY +LAP+I LYVP +Q IL+VG GNSAFS
Sbjct: 1 MATGTQAYGESWYWDNRYTNEPGPFDWYQKYITLAPIINLYVP-KNQSILVVGSGNSAFS 59
Query: 63 EGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121
+GMVD+ GY+DVVN+DISSVVI+AM KKY +RPQLKY+KMDVR M F + +F SV+DKG
Sbjct: 60 QGMVDEGGYKDVVNIDISSVVIDAMQKKYRDRPQLKYLKMDVRDMSAFASETFGSVIDKG 119
Query: 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181
TLDS+LCG+NSRQ+AT+ML+E+WRVLK KGVYILVTYGAP+YRL +LRDSCSW IKLHVI
Sbjct: 120 TLDSILCGNNSRQHATKMLEEIWRVLKAKGVYILVTYGAPLYRLRLLRDSCSWTIKLHVI 179
Query: 182 EKLVVEEKSGHPIWELTNPVPLENDG 207
EKL EEKS +P+WELT P+PL NDG
Sbjct: 180 EKLASEEKSVNPLWELTKPIPLNNDG 205
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297834650|ref|XP_002885207.1| hypothetical protein ARALYDRAFT_898077 [Arabidopsis lyrata subsp. lyrata] gi|297331047|gb|EFH61466.1| hypothetical protein ARALYDRAFT_898077 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 146/207 (70%), Positives = 174/207 (84%)
Query: 1 MTMGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSA 60
M T+TQ+Y E WYWD RY +ES PFDWYQKY SLAPLI LYVP +QR L++GCGNSA
Sbjct: 1 MATETSTQSYSEKWYWDERYTNESEPFDWYQKYSSLAPLINLYVPHRNQRALVIGCGNSA 60
Query: 61 FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120
FSEGMVDDGYEDVVN+DISSVVI+ M+KKYS+RPQLKY+KMDVR M F+ SFD+V+DK
Sbjct: 61 FSEGMVDDGYEDVVNIDISSVVIDTMIKKYSDRPQLKYLKMDVRDMKAFEDASFDAVIDK 120
Query: 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHV 180
GTLDS+LCGSNSRQ +TQML+EVWRVLKDKGVYIL+TYGAPIYRL + ++SCSW KLHV
Sbjct: 121 GTLDSILCGSNSRQYSTQMLEEVWRVLKDKGVYILITYGAPIYRLRLFKESCSWTTKLHV 180
Query: 181 IEKLVVEEKSGHPIWELTNPVPLENDG 207
I+K + ++ P WELT P+PL+ +G
Sbjct: 181 IDKSLTDQPLETPKWELTKPLPLDAEG 207
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388519797|gb|AFK47960.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 323 bits (827), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 152/206 (73%), Positives = 178/206 (86%), Gaps = 2/206 (0%)
Query: 3 MGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFS 62
M T TQAYGE WYWDNRY +E GPFDWYQKY +LAP+I LYVP +Q IL+VG GNSAFS
Sbjct: 1 MATGTQAYGESWYWDNRYTNEPGPFDWYQKYITLAPIINLYVP-KNQSILVVGSGNSAFS 59
Query: 63 EGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121
+GMVD+ GY+DVVN+DISSVVI+AM KKY +RPQLKY+KMDVR M F + +F SV+DKG
Sbjct: 60 QGMVDEGGYKDVVNIDISSVVIDAMQKKYRDRPQLKYLKMDVRDMSAFASETFGSVIDKG 119
Query: 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181
TLDS+LCG+NSRQ+AT+ML+E+WRVLK KGVYILVTYGAP+YRL +LRDSCSW IKLHVI
Sbjct: 120 TLDSILCGNNSRQHATKMLEEIWRVLKAKGVYILVTYGAPLYRLRLLRDSCSWTIKLHVI 179
Query: 182 EKLVVEEKSGHPIWELTNPVPLENDG 207
EKL EEKS +P+WELT P+PL NDG
Sbjct: 180 EKLASEEKSVNPLWELTKPIPLNNDG 205
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556153|ref|XP_003546391.1| PREDICTED: methyltransferase-like protein 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 148/206 (71%), Positives = 179/206 (86%), Gaps = 2/206 (0%)
Query: 3 MGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFS 62
M T+TQAYGEPWYWDNRY++E GPFDWYQKY +LAP+ LYVP Q +L+VGCGNSAFS
Sbjct: 1 MTTSTQAYGEPWYWDNRYSNEPGPFDWYQKYLTLAPITNLYVPPA-QPVLVVGCGNSAFS 59
Query: 63 EGMV-DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121
EGMV D GY DVVN+DISSVVI+AM K+ + P+LK++KMD R M +F++GSF +V+DKG
Sbjct: 60 EGMVVDGGYTDVVNIDISSVVIKAMKTKHQDCPKLKFMKMDARDMSDFESGSFGAVIDKG 119
Query: 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181
TLDS+LCG+NSRQNAT+ML+E+WRVLKDKGVY+LVTYGAP+YRL +LR+SCSW IKLHVI
Sbjct: 120 TLDSILCGNNSRQNATKMLEEIWRVLKDKGVYVLVTYGAPLYRLRLLRESCSWTIKLHVI 179
Query: 182 EKLVVEEKSGHPIWELTNPVPLENDG 207
EKL EEKS +P+WELT PVPL +DG
Sbjct: 180 EKLASEEKSDNPVWELTKPVPLNDDG 205
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18401485|ref|NP_566574.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|15293079|gb|AAK93650.1| unknown protein [Arabidopsis thaliana] gi|21689773|gb|AAM67530.1| unknown protein [Arabidopsis thaliana] gi|332642423|gb|AEE75944.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 144/207 (69%), Positives = 173/207 (83%)
Query: 1 MTMGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSA 60
M TQ+Y E WYWD+RY +ES PFDWYQKY LAPLI LYVP +QR+L++GCGNSA
Sbjct: 1 MATEAPTQSYSEQWYWDDRYKNESEPFDWYQKYSPLAPLINLYVPQRNQRVLVIGCGNSA 60
Query: 61 FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120
FSEGMVDDGYEDVV++DISSVVI+ M+KKYS+RPQLKY+KMDVR M F+ SFD+V+DK
Sbjct: 61 FSEGMVDDGYEDVVSIDISSVVIDTMIKKYSDRPQLKYLKMDVRDMKAFEDASFDAVIDK 120
Query: 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHV 180
GTLDS+LCGSNSRQ +TQML+EVWRVLKDKGVYIL+TYGAPIYRL + ++SCSW KLHV
Sbjct: 121 GTLDSILCGSNSRQYSTQMLEEVWRVLKDKGVYILITYGAPIYRLRLFKESCSWTTKLHV 180
Query: 181 IEKLVVEEKSGHPIWELTNPVPLENDG 207
I+K + ++ P WELT P+PL+ DG
Sbjct: 181 IDKSLTDQPLDTPKWELTKPLPLDADG 207
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217072540|gb|ACJ84630.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 150/206 (72%), Positives = 176/206 (85%), Gaps = 2/206 (0%)
Query: 3 MGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFS 62
M T TQAYGE WYWDNRY +E G FDWYQKY +LAP+I LYVP +Q IL+VG GNSAFS
Sbjct: 1 MATGTQAYGESWYWDNRYTNEPGLFDWYQKYITLAPIINLYVP-KNQSILVVGSGNSAFS 59
Query: 63 EGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121
+GMVD+ GY+DVVN+DISSVVI+AM KKY +RPQLKY+KMDVR M F + +F SV+DKG
Sbjct: 60 QGMVDEGGYKDVVNIDISSVVIDAMQKKYRDRPQLKYLKMDVRDMSAFASETFGSVIDKG 119
Query: 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181
TLDS+LCG+NSRQ+AT+ML+E+WRVLK KGVYILVTYGAP+YRL +LRDSCSW IKLHVI
Sbjct: 120 TLDSILCGNNSRQHATKMLEEIWRVLKAKGVYILVTYGAPLYRLRLLRDSCSWTIKLHVI 179
Query: 182 EKLVVEEKSGHPIWELTNPVPLENDG 207
EKL EEKS +P+W LT P+PL NDG
Sbjct: 180 EKLASEEKSVNPLWGLTKPIPLNNDG 205
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 207 | ||||||
| TAIR|locus:2101861 | 252 | AT3G60910 "AT3G60910" [Arabido | 0.850 | 0.698 | 0.466 | 4.2e-40 | |
| DICTYBASE|DDB_G0282393 | 232 | DDB_G0282393 "Methyltransferas | 0.821 | 0.732 | 0.371 | 3.2e-26 | |
| UNIPROTKB|D4ADU7 | 255 | LOC100363561 "Protein LOC10036 | 0.801 | 0.650 | 0.346 | 3.4e-22 | |
| UNIPROTKB|F1PUB6 | 255 | ECE2 "Uncharacterized protein" | 0.743 | 0.603 | 0.373 | 4.3e-22 | |
| UNIPROTKB|G3N1Q4 | 255 | ECE2 "Endothelin-converting en | 0.739 | 0.6 | 0.363 | 1.2e-19 | |
| ZFIN|ZDB-GENE-070912-214 | 260 | si:ch211-224b1.4 "si:ch211-224 | 0.797 | 0.634 | 0.333 | 3.1e-19 | |
| UNIPROTKB|F1S7S8 | 699 | METTL13 "Uncharacterized prote | 0.835 | 0.247 | 0.316 | 3.9e-19 | |
| UNIPROTKB|F1PCU5 | 608 | F1PCU5 "Uncharacterized protei | 0.816 | 0.277 | 0.324 | 4.9e-19 | |
| UNIPROTKB|F1PDJ6 | 699 | METTL13 "Uncharacterized prote | 0.816 | 0.241 | 0.324 | 6.4e-19 | |
| UNIPROTKB|A5PK19 | 699 | METTL13 "Methyltransferase-lik | 0.835 | 0.247 | 0.311 | 1.3e-18 |
| TAIR|locus:2101861 AT3G60910 "AT3G60910" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 83/178 (46%), Positives = 114/178 (64%)
Query: 7 TQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMV 66
T YG+ YWD RY ++ FDWYQ Y SL P ++ +V S R+L+VGCGNS SE MV
Sbjct: 10 TYNYGDALYWDARYVQDALSFDWYQCYSSLRPFVRSFV-STSSRVLMVGCGNSLMSEDMV 68
Query: 67 DDGYXXXXXXXXXXXXXXAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126
DGY M KY++ PQLKY++MDVR M F+ SFD+++DKGTLDSL
Sbjct: 69 KDGYEDIMNVDISSVAIEMMQTKYASVPQLKYMQMDVRDMSYFEDDSFDTIIDKGTLDSL 128
Query: 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML-RDSCSWNIKLHVIEK 183
+CGS++ +A++ML EV R++K G Y L+TYG P R+ L R + +W I L++I +
Sbjct: 129 MCGSDALLSASRMLGEVSRLIKPGGTYFLITYGDPKVRMPHLTRSAYNWKISLYIIPR 186
|
|
| DICTYBASE|DDB_G0282393 DDB_G0282393 "Methyltransferase-like protein 12, mitochondrial" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 65/175 (37%), Positives = 95/175 (54%)
Query: 10 YGEPWYWDNRYAHES--GPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVD 67
YG YWD+RY + + FDWY YP+L + + +IL++GCGNS E M D
Sbjct: 4 YGSLEYWDDRYTNLTIKKDFDWYHGYPTLKVFLNKFFKKK-DKILMIGCGNSKLGEDMND 62
Query: 68 DGYXXXXXXXXXXXXXXAMMKKYSNRPQLKYIKMDVRQMDEF-QTGSFDSVVDKGTLDSL 126
D + M ++ R L+Y+ MD R M F + FD V DKGTLD++
Sbjct: 63 DEFVDIINMDYSEPLIEYMKERTKGRIGLEYLTMDGRDMKPFFKDNHFDHVFDKGTLDAV 122
Query: 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSC-SWNIKLHV 180
+C + +NA Q+L EV RVLK G +I++TYG+P RL +L + +W +L +
Sbjct: 123 MCSDDDNENAKQILLEVSRVLKPGGFFIVMTYGSPESRLPLLNNPIHNWTTELRM 177
|
|
| UNIPROTKB|D4ADU7 LOC100363561 "Protein LOC100363561" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 62/179 (34%), Positives = 95/179 (53%)
Query: 10 YGEPWYWDNRY--AHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVD 67
Y + YWD RY A +SGP++W+ + S L++ + RIL++GCGNSA S +
Sbjct: 20 YRQVQYWDQRYKDAADSGPYEWFGDFASFRALLEPEL-CPEDRILVLGCGNSALSYELFL 78
Query: 68 DGYXXXXXXXXXXXXXXAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127
G+ AM +Y++ P L++ MD+R +D F +GSFD V++KGTLD+LL
Sbjct: 79 GGFPNVTSVDYSPVVVAAMQVRYAHVPSLRWETMDIRALD-FPSGSFDVVLEKGTLDALL 137
Query: 128 CGSNSRQNAT--------QMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSC-SWNIK 177
G N + Q+L EV RVL G +I +T P +R+ C W+++
Sbjct: 138 AGEPDPWNVSSEGVHTVDQVLSEVSRVLVPGGRFISMTPAGPHFRIRHYAQPCYDWSLR 196
|
|
| UNIPROTKB|F1PUB6 ECE2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 62/166 (37%), Positives = 90/166 (54%)
Query: 10 YGEPWYWDNRY--AHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVD 67
Y E YWD RY A +S P++W+ + S L++ + RIL++GCGNSA S +
Sbjct: 20 YREVQYWDRRYRNAADSAPYEWFGDFSSFRALLEPELQPE-DRILVLGCGNSALSYELFL 78
Query: 68 DGYXXXXXXXXXXXXXXAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127
G+ AM +Y++ P L++ MDVR +D F +GSFD V++KGTLD+LL
Sbjct: 79 GGFPDVTSVDYSSVVVAAMQARYAHVPTLRWETMDVRALD-FPSGSFDVVLEKGTLDALL 137
Query: 128 CGSNSRQNAT--------QMLKEVWRVLKDKGVYILVTYGAPIYRL 165
G N + Q+L EV RVL G +I +T AP +R+
Sbjct: 138 AGEQDPWNVSSEGVHTMDQVLSEVSRVLVHGGRFISLTSAAPHFRI 183
|
|
| UNIPROTKB|G3N1Q4 ECE2 "Endothelin-converting enzyme 2 region" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 60/165 (36%), Positives = 86/165 (52%)
Query: 10 YGEPWYWDNRY--AHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVD 67
Y E YWD RY A +S P++W+ + L++ + RIL++GCGNSA S +
Sbjct: 20 YREVQYWDQRYQGAADSAPYEWFGDFSCFRDLLEPELRPL-DRILVLGCGNSALSYEIFL 78
Query: 68 DGYXXXXXXXXXXXXXXAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127
G+ AM +Y++ P L++ MDVR + F +GSFD V++KGTLD+LL
Sbjct: 79 GGFPDVTSVDYSSVVVAAMRARYAHVPTLRWETMDVRALG-FPSGSFDVVLEKGTLDALL 137
Query: 128 CG--------SNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYR 164
G S Q+L EV RVL G +I +T AP +R
Sbjct: 138 TGEQDPWTVSSEGVHTVDQVLNEVSRVLVPAGRFISLTSAAPHFR 182
|
|
| ZFIN|ZDB-GENE-070912-214 si:ch211-224b1.4 "si:ch211-224b1.4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 59/177 (33%), Positives = 91/177 (51%)
Query: 10 YGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG 69
Y + YW+ RY E F+W+ + L+K +V + + IL++GCGNSA S M G
Sbjct: 28 YKDVDYWNERYRTEES-FEWFGDFTKFEHLLKQHVGTE-ENILMLGCGNSALSYDMCQAG 85
Query: 70 YXXXXXXXXXXXXXXAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCG 129
Y +M +++ + QL ++ MD R++ F G FD V++KGTLD++L
Sbjct: 86 YSSITNVDYSSVCVESMAERHKDCAQLNWLCMDARRL-AFPDGVFDVVLEKGTLDAMLVE 144
Query: 130 SNS----RQNAT----QMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDS-CSWNIK 177
+NA Q+L EV RVLK G +I VT+ P +R + + W+IK
Sbjct: 145 ETDPWKISENAARLLHQVLLEVSRVLKPGGRFISVTFAQPHFRKRLYAQAEYDWSIK 201
|
|
| UNIPROTKB|F1S7S8 METTL13 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 239 (89.2 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 58/183 (31%), Positives = 97/183 (53%)
Query: 6 TTQAYGEPWYWDNRYAHESGP--FDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSE 63
+++ +G YW+ ++ + G F+WY Y L ++ Y+ +++L++GCGNS SE
Sbjct: 7 SSKEFGSVDYWE-KFFQQRGKKAFEWYGTYLELCGVLHKYIKPR-EKVLVIGCGNSELSE 64
Query: 64 GMVDDGYXXXXXXXXXXXXXXAMMKKY-SNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122
+ D GY M ++ S RPQL ++KMD+ QM EF SF V+DKGT
Sbjct: 65 QLYDVGYQDIVNIDISEVVIKQMKERNASRRPQLSFLKMDMTQM-EFPDASFQVVLDKGT 123
Query: 123 LDSLLCGSNSR--QNATQMLKEVWRVLKDKGVYILVTYG-APIYRLGMLRDSCS-WNIKL 178
LD++L + Q +ML EV RVL+ G Y+ ++ A + + + S W +++
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVRV 183
Query: 179 HVI 181
H +
Sbjct: 184 HQV 186
|
|
| UNIPROTKB|F1PCU5 F1PCU5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 4.9e-19, P = 4.9e-19
Identities = 58/179 (32%), Positives = 94/179 (52%)
Query: 10 YGEPWYWDNRYAHESGP--FDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVD 67
+G YW+ ++ + G F+WY Y L ++ Y+ +++L++GCGNS SE + D
Sbjct: 11 FGSVDYWE-KFFQQRGKKAFEWYGSYLELCGVLHKYIKPR-EKVLVIGCGNSELSEQLYD 68
Query: 68 DGYXXXXXXXXXXXXXXAMMKKY-SNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126
GY M ++ S RPQ+ ++KMD+ QM EF SF V+DKGTLD++
Sbjct: 69 VGYQDIVNIDISEVVIKQMKERNASRRPQMSFLKMDMTQM-EFPDASFQVVLDKGTLDAV 127
Query: 127 LCGSNSR--QNATQMLKEVWRVLKDKGVYILVTYG-APIYRLGMLRDSCS-WNIKLHVI 181
L + Q +ML EV RVL+ G Y+ ++ A I + + S W +++H +
Sbjct: 128 LTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRVHQV 186
|
|
| UNIPROTKB|F1PDJ6 METTL13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 6.4e-19, P = 6.4e-19
Identities = 58/179 (32%), Positives = 94/179 (52%)
Query: 10 YGEPWYWDNRYAHESGP--FDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVD 67
+G YW+ ++ + G F+WY Y L ++ Y+ +++L++GCGNS SE + D
Sbjct: 11 FGSVDYWE-KFFQQRGKKAFEWYGSYLELCGVLHKYIKPR-EKVLVIGCGNSELSEQLYD 68
Query: 68 DGYXXXXXXXXXXXXXXAMMKKY-SNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126
GY M ++ S RPQ+ ++KMD+ QM EF SF V+DKGTLD++
Sbjct: 69 VGYQDIVNIDISEVVIKQMKERNASRRPQMSFLKMDMTQM-EFPDASFQVVLDKGTLDAV 127
Query: 127 LCGSNSR--QNATQMLKEVWRVLKDKGVYILVTYG-APIYRLGMLRDSCS-WNIKLHVI 181
L + Q +ML EV RVL+ G Y+ ++ A I + + S W +++H +
Sbjct: 128 LTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRVHQV 186
|
|
| UNIPROTKB|A5PK19 METTL13 "Methyltransferase-like protein 13" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 234 (87.4 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 57/183 (31%), Positives = 97/183 (53%)
Query: 6 TTQAYGEPWYWDNRYAHESGP--FDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSE 63
+++ +G YW+ ++ + G F+WY Y L ++ Y+ +++L+VGCGNS SE
Sbjct: 7 SSKEFGSVDYWE-KFFQQRGKKAFEWYGTYLELCGVLHKYIKPR-EKVLVVGCGNSELSE 64
Query: 64 GMVDDGYXXXXXXXXXXXXXXAMMKKY-SNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122
+ D GY M ++ S RP++ ++KMD+ QM EF SF V+DKGT
Sbjct: 65 QLYDVGYQDIVNIDISEVVIKQMKERNASRRPRMSFLKMDMTQM-EFPDASFQVVLDKGT 123
Query: 123 LDSLLCGSNSR--QNATQMLKEVWRVLKDKGVYILVTYG-APIYRLGMLRDSCS-WNIKL 178
LD++L + Q +ML EV RVL+ G Y+ ++ A + + + S W +++
Sbjct: 124 LDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVRV 183
Query: 179 HVI 181
H +
Sbjct: 184 HQV 186
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_LG_X1381 | hypothetical protein (241 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 207 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 7e-13 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 1e-11 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 5e-09 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 3e-07 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-05 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 5e-05 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 9e-05 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 3e-04 | |
| pfam05724 | 203 | pfam05724, TPMT, Thiopurine S-methyltransferase (T | 4e-04 | |
| TIGR00452 | 314 | TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransfer | 7e-04 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 0.001 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 0.004 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 7e-13
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 12/102 (11%)
Query: 54 VGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGS 113
VGCG +E + G V VD+S M+ R K++ D + F S
Sbjct: 3 VGCGTGLLAEALARRGGARVTGVDLS----PEMLALARKRAPRKFVVGDAEDLP-FPDES 57
Query: 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155
FD VV L L + + L+E+ RVLK G ++
Sbjct: 58 FDVVVSSLVLHHL-------PDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-11
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKK--YSNRPQLKYIKMDVRQMD 107
R+L +GCG A + + V VDIS V +E K ++ +K D ++
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60
Query: 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
SFD ++ L L+ ++ + L+E R+LK GV +L
Sbjct: 61 PEADESFDVIISDPPLHHLV------EDLARFLEEARRLLKPGGVLVLTLV 105
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-09
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 23/155 (14%)
Query: 45 PSHHQRILIVGCGNSAFSEGMVDDGYE--DVVNVDISSVVIE-----AMMKKYSNRPQLK 97
++L +GCG + + + +VV +DIS IE A Y N ++
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYEN---VE 57
Query: 98 YIKMDVRQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQ-MLKEVWRVLKDKGVYI 154
+I+ D+ ++ + + SFD V+ L+ +L+E+ RVLK GV I
Sbjct: 58 FIQGDIEELPQLQLEDNSFDVVISNEVLN--------HLPDPDKVLEEIIRVLKPGGVLI 109
Query: 155 LVTYGAPIYRLGMLRDSCSWNIKLHVIEKLVVEEK 189
+ +L D + V+E + ++K
Sbjct: 110 VSDPVLLSELPALLEDLE--RLYAGVLEGAIGKKK 142
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This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-07
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 16/116 (13%)
Query: 47 HHQRILIVGCGNSAFSEGMVD--DGYEDVVNVDISSVVIEAMMKKY--SNRPQLKYIKMD 102
R+L +GCG + + + G V VD+S ++E + + P++ +++ D
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGAR-VTGVDLSPEMLELARENAKLALGPRITFVQGD 59
Query: 103 VRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
+ G FD+V G LL ++L + +LK G +L
Sbjct: 60 APDALDLLEG-FDAVFIGGGGGDLL----------ELLDALASLLKPGGRLVLNAV 104
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-05
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 51 ILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF 109
IL +GCG + G V VDIS +E ++ P+++++ D R +
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLPFE 60
Query: 110 QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKG 151
+ GSFD V+ G L S + +L+E R+L+ G
Sbjct: 61 E-GSFDLVICAGLSLDYL----SPKQLRALLREAARLLRPGG 97
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This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-05
Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 23/134 (17%)
Query: 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMK--KYS 91
L L+K +L +GCG + ++ + + DIS M+ K
Sbjct: 22 RLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIANDIS----AGMLAQAKTK 77
Query: 92 NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSR----QNATQMLKEVWRVL 147
+++I D ++ + SFD +V SN + +Q L E+ RVL
Sbjct: 78 LSENVQFICGDAEKLP-LEDSSFDLIV-----------SNLALQWCDDLSQALSELARVL 125
Query: 148 KDKGVYILVTYGAP 161
K G+ T+G
Sbjct: 126 KPGGLLAFSTFGPG 139
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 9e-05
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF 109
R+L GCG S + G V VDIS +++ + R ++ +V +
Sbjct: 58 RVLDAGCGTGLLSIELAKRGAI-VKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL-LS 115
Query: 110 QTGSFDSVVDKGTLDSLL 127
G FD VV +D L+
Sbjct: 116 LCGEFDIVV---CMDVLI 130
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 3e-04
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 23/122 (18%)
Query: 50 RILIVGCGNSAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQ 105
R+L G G+ AF G + VV V++ ++ + P+++ + D R+
Sbjct: 3 RVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDARE 62
Query: 106 MDEFQTGSFDSVV----------DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155
+ E GSFD V+ D L + L R+LK GV ++
Sbjct: 63 LLELPDGSFDLVLGNPPYGPRAGDPKDNRDL---------YDRFLAAALRLLKPGGVLVV 113
Query: 156 VT 157
+T
Sbjct: 114 IT 115
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|218717 pfam05724, TPMT, Thiopurine S-methyltransferase (TPMT) | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 24/138 (17%)
Query: 38 PLIKLYVPSH----HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR 93
PL+ + + R+L+ CG + + + G+ VV V+IS + +E +
Sbjct: 9 PLLVRHWDALNLPPGLRVLVPLCGKALDMVWLAEQGH-FVVGVEISELAVEKFFAEAGLS 67
Query: 94 PQLKYI---------KMDVRQMDEF-----QTGSFDSVVDKGTLDSLLCGSNSRQNATQM 139
P + + +++ D F G FD + D+ L +L R A QM
Sbjct: 68 PPITELSGFKEYRAGGIELLCGDFFTLPREDLGKFDLIYDRAALCALPPEMRPRY-AKQM 126
Query: 140 LKEVWRVLKDKGVYILVT 157
+L G +L+T
Sbjct: 127 Y----ELLPPGGRGLLIT 140
|
This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyzes S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines. Length = 203 |
| >gnl|CDD|129544 TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransferase | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 7e-04
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 19/134 (14%)
Query: 27 FDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVI--- 83
W + P L+PL + IL VGCG+ M+ G + +V +D + + +
Sbjct: 108 IKWDRVLPHLSPL-------KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF 160
Query: 84 EAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEV 143
EA+ K N + + + Q+ E +FD+V G L R++ + LK++
Sbjct: 161 EAVRKLLDNDKRAILEPLGIEQLHELY--AFDTVFSMGVL-------YHRKSPLEHLKQL 211
Query: 144 WRVLKDKGVYILVT 157
L KG +L T
Sbjct: 212 KHQLVIKGELVLET 225
|
This model describes a set of proteins with homology in its central region to a large number of methyltransferases active on a variety of substrates. The similarity includes a motif resembling ILDVGCG[SG]G. Known examples to date are restricted to the proteobacteria [Unknown function, Enzymes of unknown specificity]. Length = 314 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYED--VVNVDISSVVIEAMMKKYSNRPQL 96
+KL Q++L V CG + + + V VD SS ++E KK +
Sbjct: 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNI 90
Query: 97 KYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKG-VYIL 155
++I+ D + F+ SFD+V ++ G + + + L+E++RVLK G + IL
Sbjct: 91 EFIQADAEAL-PFEDNSFDAV-------TIAFGLRNVTDIQKALREMYRVLKPGGRLVIL 142
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.004
Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Query: 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA--MMKKYSNRPQLKYIKMDVRQMD 107
R+L VGCG SE + G +V +D S IE + K +++Y V +
Sbjct: 48 RVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA 106
Query: 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157
E SFD V L+ + + ++ ++LK G+ T
Sbjct: 107 EKGAKSFDVVTCMEVLEHV-------PDPQAFIRACAQLLKPGGILFFST 149
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 207 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.86 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.85 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.85 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.85 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.82 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.82 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.8 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.79 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.78 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.78 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.78 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.78 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.77 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.77 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.76 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.76 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.76 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.75 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.75 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.75 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.75 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.74 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.73 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.73 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.72 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.72 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.71 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.71 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.71 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.71 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.71 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.71 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.7 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.7 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.7 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.69 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.69 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.68 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.68 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.67 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.67 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.66 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.66 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.65 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.65 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.64 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.64 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.64 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.64 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.64 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.63 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.62 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.62 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.62 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.62 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.62 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.62 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.61 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.61 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.6 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.6 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.6 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.6 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.6 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.6 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.59 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.59 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.57 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.57 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.57 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.57 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.56 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.56 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.56 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.56 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.55 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.55 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.54 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.54 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.54 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.54 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.54 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.54 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.53 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.53 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.53 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.53 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.52 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.52 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.52 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.51 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.51 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.51 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.51 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.5 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.5 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.5 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.49 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 99.49 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.49 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.48 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.48 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.48 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.48 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.48 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.47 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.46 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.46 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.46 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.46 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.45 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.42 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.42 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.42 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.42 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.41 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.41 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.4 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.37 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.37 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.36 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.35 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.34 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.34 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.34 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.33 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.33 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.33 | |
| PLN02366 | 308 | spermidine synthase | 99.32 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.31 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.31 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.31 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.31 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.3 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.29 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.29 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.28 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.28 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.25 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.25 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.25 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.24 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.24 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.23 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.23 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.22 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.2 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.2 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.16 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.16 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.16 | |
| PLN02823 | 336 | spermine synthase | 99.16 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.16 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.15 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.15 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.15 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.14 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.13 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.13 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.13 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.12 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.12 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.11 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.1 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.09 | |
| PLN02476 | 278 | O-methyltransferase | 99.09 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.09 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.09 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.07 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 99.07 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.07 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 99.06 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 99.04 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.04 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 99.04 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 99.01 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.99 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.97 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.96 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.95 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.95 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.94 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.93 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.93 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.92 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.92 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.9 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.89 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.89 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.88 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.88 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.86 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.85 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.81 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.81 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.8 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.77 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.75 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.75 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.75 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.74 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.73 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.72 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.72 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.72 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.68 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.68 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.67 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.6 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.56 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.53 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.52 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.51 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.51 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.5 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.49 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.48 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.47 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.4 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.39 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.39 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.38 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.36 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.36 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 98.35 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.34 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.33 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.32 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.3 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.29 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.29 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.28 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.28 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.23 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.21 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.21 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.15 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.13 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.12 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.12 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.1 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.06 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 98.04 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.98 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.93 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.9 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.89 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.89 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.87 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.84 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.83 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.74 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.71 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.7 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.63 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.62 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.59 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.55 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.53 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 97.35 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.35 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 97.33 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.31 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.3 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.29 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 97.28 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.25 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 97.2 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.2 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.16 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 97.13 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 97.1 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.01 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.99 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.96 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.95 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.91 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.9 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 96.87 | |
| PHA01634 | 156 | hypothetical protein | 96.85 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.81 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.77 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.76 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.7 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.55 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 96.55 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 96.51 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 96.5 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 96.48 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.47 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.44 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 96.4 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.39 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.38 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.15 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.08 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.06 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.97 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.77 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 95.69 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.66 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 95.63 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 95.61 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 95.51 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 95.17 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 95.17 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 94.99 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 94.96 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 94.85 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 94.73 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.66 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 94.41 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 94.25 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 94.09 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 93.9 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 93.75 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 93.75 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 93.68 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 93.53 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 93.44 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 93.32 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 93.31 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 93.19 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.15 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 92.99 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 92.92 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.45 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 92.45 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 92.4 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.39 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 91.98 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 91.69 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 91.69 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 91.55 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.45 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 91.43 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 91.22 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 91.12 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 90.91 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 90.71 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 90.47 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 90.45 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 90.44 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 90.33 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 90.24 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 90.18 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 90.13 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 89.9 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 89.73 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 89.41 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 88.83 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 88.77 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 88.7 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 88.44 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.26 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 87.92 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 87.75 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 87.59 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 87.31 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 86.64 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.51 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 86.41 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 86.14 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 86.1 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.07 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 85.95 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 85.93 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 85.92 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 85.79 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 85.77 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 85.69 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 85.46 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 85.44 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 85.27 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 85.2 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.18 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 84.74 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 84.6 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 84.41 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 84.37 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 84.37 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 84.19 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 84.0 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 83.9 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 83.75 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 83.71 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 83.57 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 83.47 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 83.41 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 83.41 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 83.15 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 83.15 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 83.14 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 83.09 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 82.93 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 82.93 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 82.69 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 82.69 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 82.39 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 82.2 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 82.08 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 81.71 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 81.65 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.63 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 81.61 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 81.48 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 81.42 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 81.24 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 81.01 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 80.7 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 80.67 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-21 Score=142.39 Aligned_cols=123 Identities=23% Similarity=0.369 Sum_probs=104.4
Q ss_pred ccCHHHHH-HhhCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccc
Q 028547 33 YPSLAPLI-KLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDE 108 (207)
Q Consensus 33 ~~~~~~~l-~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~ 108 (207)
+..+.+.+ ......++.+|||+|||||.++..+++.. ..+++++|+|+.|++.++++..+. .+++|+.+|+.++ |
T Consensus 36 ~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L-P 114 (238)
T COG2226 36 HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL-P 114 (238)
T ss_pred hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC-C
Confidence 33344433 33333345599999999999999999974 359999999999999999998753 4599999999999 8
Q ss_pred cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 109 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
+++++||+|.+...+.++ .+++.+|++++|+|||||.+++..++.+..
T Consensus 115 f~D~sFD~vt~~fglrnv-------~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 115 FPDNSFDAVTISFGLRNV-------TDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred CCCCccCEEEeeehhhcC-------CCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 999999999999999988 899999999999999999999999887743
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-21 Score=146.23 Aligned_cols=111 Identities=27% Similarity=0.472 Sum_probs=85.4
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeC
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
..++.+|||+|||+|.++..+++. +. .+|+++|+|+.|++.++++... ..+++++++|+.++ |+++++||+|++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l-p~~d~sfD~v~~~ 123 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL-PFPDNSFDAVTCS 123 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---S-TT-EEEEEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh-cCCCCceeEEEHH
Confidence 444459999999999999999876 33 4999999999999999998763 25899999999999 7999999999999
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
..++.+ .+....+++++|+|||||.+++..++.+..
T Consensus 124 fglrn~-------~d~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 124 FGLRNF-------PDRERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp S-GGG--------SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred hhHHhh-------CCHHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 889887 789999999999999999999999877754
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=138.58 Aligned_cols=140 Identities=17% Similarity=0.269 Sum_probs=108.2
Q ss_pred hchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc--
Q 028547 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-- 91 (207)
Q Consensus 14 ~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-- 91 (207)
+||+++|......|.-......+.+.+..+...++.+|||+|||.|..+.+++++|+ +|+|+|+|+.+++.+.+...
T Consensus 1 ~~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~ 79 (213)
T TIGR03840 1 EFWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLT 79 (213)
T ss_pred ChHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCC
Confidence 489999988754443233444566666654322334999999999999999999999 99999999999998644221
Q ss_pred ------------CCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 92 ------------NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 92 ------------~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
...++++.++|+.++.+...+.||.|+...+++++ +.......++.+.++|+|||.+++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l-----~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 80 PTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIAL-----PEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred cceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccC-----CHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 12468999999999743234689999999888887 6788899999999999999987777654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-21 Score=135.07 Aligned_cols=154 Identities=23% Similarity=0.468 Sum_probs=120.2
Q ss_pred CCCCCCChhchhhhhcccCCcee--------eecCcc--CHHHHHHhhCC-----CCCCcEEEEcCCCchhhHHHHhcCC
Q 028547 6 TTQAYGEPWYWDNRYAHESGPFD--------WYQKYP--SLAPLIKLYVP-----SHHQRILIVGCGNSAFSEGMVDDGY 70 (207)
Q Consensus 6 ~~~~~~~~~~w~~~~~~~~~~~~--------~~~~~~--~~~~~l~~~~~-----~~~~~vLdiG~G~G~~~~~l~~~~~ 70 (207)
+.+..+-++||++.|+.+...|. |+.... .+.+.+..... +...+|||+|||+|.++..+++.++
T Consensus 11 ~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf 90 (227)
T KOG1271|consen 11 GQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF 90 (227)
T ss_pred cccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC
Confidence 44556669999999998865553 877543 23333333322 2223999999999999999999987
Q ss_pred -CcEEEEeCCHHHHHHHHHHccCC--CC-ceEEEeccccccccCCCCeeEEEeCcchhhhc-cCCCChhhHHHHHHHHHH
Q 028547 71 -EDVVNVDISSVVIEAMMKKYSNR--PQ-LKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL-CGSNSRQNATQMLKEVWR 145 (207)
Q Consensus 71 -~~v~~~D~s~~~i~~~~~~~~~~--~~-~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~~~~~~~~l~~~~~ 145 (207)
...+|+|+|+.+++.|+...+.. ++ |+|.+.|+.+. .+..+.||+|+..+++++++ ++......+...+..+.+
T Consensus 91 ~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ 169 (227)
T KOG1271|consen 91 QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEK 169 (227)
T ss_pred CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCceeeeecCCCCcccceeeehhhHhh
Confidence 46999999999999998876633 44 99999999998 46789999999999999997 444445555788999999
Q ss_pred hcCCCcEEEEEEeCC
Q 028547 146 VLKDKGVYILVTYGA 160 (207)
Q Consensus 146 ~L~pgG~~~~~~~~~ 160 (207)
+|+|||+|+|.++.-
T Consensus 170 ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 170 LLSPGGIFVITSCNF 184 (227)
T ss_pred ccCCCcEEEEEecCc
Confidence 999999999987543
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-19 Score=133.24 Aligned_cols=139 Identities=19% Similarity=0.287 Sum_probs=107.3
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS- 91 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~- 91 (207)
.++|+++|.+....|.-......+.+.+......++.+|||+|||.|..+.++++.|+ +|+|+|+|+.+++.+.+...
T Consensus 3 ~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l 81 (218)
T PRK13255 3 PDFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGL 81 (218)
T ss_pred HhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCC
Confidence 5699999998865453334444556655543222334999999999999999999999 99999999999998643211
Q ss_pred -------------CCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 92 -------------NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 92 -------------~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
...++++.++|+.++.+.....||.|+...+++++ +......+++.+.++|+|||.+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l-----~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 82 TPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIAL-----PEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred CccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhC-----CHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 12468899999999843334689999999988888 67889999999999999999766544
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=118.32 Aligned_cols=95 Identities=29% Similarity=0.569 Sum_probs=83.7
Q ss_pred EEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCC
Q 028547 52 LIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSN 131 (207)
Q Consensus 52 LdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 131 (207)
||+|||+|..+..+++.+..+++++|+++.+++.++++... .++.+...|+.++ ++++++||+|++..+++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~~~----- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDL-PFPDNSFDVVFSNSVLHHL----- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSS-SS-TT-EEEEEEESHGGGS-----
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhC-ccccccccccccccceeec-----
Confidence 89999999999999999445999999999999999998865 4566999999999 7999999999999999998
Q ss_pred ChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 132 SRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 132 ~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
++...+++++.|+|||||.+++
T Consensus 74 --~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 --EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCHHHHHHHHHHHcCcCeEEeC
Confidence 8999999999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-19 Score=132.16 Aligned_cols=104 Identities=25% Similarity=0.379 Sum_probs=92.3
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+++|||+|||.|.++..+++.|. +|+|+|+++++|+.|+...... -++.+.+..+.++. ...++||+|+|..+++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA-SAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-hcCCCccEEEEhhHHHc
Confidence 445999999999999999999996 9999999999999999887643 45678888888874 34489999999999999
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+ .++..+++.+.+++||||.+++++..
T Consensus 137 v-------~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 137 V-------PDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred c-------CCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 9 99999999999999999999998753
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.6e-19 Score=136.86 Aligned_cols=116 Identities=18% Similarity=0.339 Sum_probs=97.1
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~ 113 (207)
..++..+. ..+.+|||+|||+|.++..+++.+. +|+++|+|+++++.++++.... .+++++++|+.+..+...++
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~ 112 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETP 112 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCC
Confidence 34454443 3334999999999999999999876 9999999999999999887632 47899999998874456789
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
||+|++..+++++ .++..+++++.++|+|||.+++..+...
T Consensus 113 fD~V~~~~vl~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 113 VDLILFHAVLEWV-------ADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred CCEEEehhHHHhh-------CCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 9999999999998 7788999999999999999998776543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=116.17 Aligned_cols=103 Identities=29% Similarity=0.465 Sum_probs=84.1
Q ss_pred CcEEEEcCCCchhhHHHHh--cCCCcEEEEeCCHHHHHHHHHHcc---CCCCceEEEeccccccccCCCCeeEEEeCc-c
Q 028547 49 QRILIVGCGNSAFSEGMVD--DGYEDVVNVDISSVVIEAMMKKYS---NRPQLKYIKMDVRQMDEFQTGSFDSVVDKG-T 122 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~--~~~~~v~~~D~s~~~i~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~-~ 122 (207)
.+|||+|||+|.++..+++ .+. +++++|+++.+++.++++.. ...++++++.|+ .......+.||+|++.. .
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCCc
Confidence 3999999999999999999 444 99999999999999999982 337999999999 32122456799999998 4
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
++++. +..+...+++++.+.|+|||.+++.+
T Consensus 81 ~~~~~----~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLL----PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCC----HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccc----chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 44331 12678899999999999999999876
|
... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-18 Score=131.44 Aligned_cols=107 Identities=19% Similarity=0.345 Sum_probs=92.8
Q ss_pred CCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHcc-----CCCCceEEEeccccccccCCCCeeEEEeC
Q 028547 48 HQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYS-----NRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
+.+|||+|||+|.++..+++. +. .+|+|+|+|++|++.++++.. ...++.++++|+.++ |+++++||+|++.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~~~ 152 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAITMG 152 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEEEe
Confidence 349999999999999988875 33 489999999999999987653 124789999999988 6888999999999
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
.+++++ .++..++++++++|||||.+++.++..+.
T Consensus 153 ~~l~~~-------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 153 YGLRNV-------VDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred cccccC-------CCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 999988 78999999999999999999999876653
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.5e-18 Score=125.48 Aligned_cols=102 Identities=22% Similarity=0.373 Sum_probs=86.6
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.... .++.+.+.|+.+. ++ .++||+|++..++++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~-~~-~~~fD~I~~~~~~~~ 107 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL-TF-DGEYDFILSTVVLMF 107 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC-Cc-CCCcCEEEEecchhh
Confidence 34999999999999999999877 9999999999999998876532 4688889998876 33 467999999999887
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+ +..+...+++++.++|+|||.+++..
T Consensus 108 ~-----~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 108 L-----EAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred C-----CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 6 45678999999999999999976544
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=124.86 Aligned_cols=145 Identities=16% Similarity=0.202 Sum_probs=117.3
Q ss_pred CCCChhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 028547 9 AYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK 88 (207)
Q Consensus 9 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~ 88 (207)
.-.+.+||+++|.+....|........+.+.+.......+.+||..|||.|..+.++++.|+ +|+|+|+|+.+++.+.+
T Consensus 5 ~~~~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 5 ETNNNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFS 83 (226)
T ss_pred ccCCHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHH
Confidence 33457799999999987776555555666666555433334999999999999999999999 89999999999999866
Q ss_pred Hcc--------------CCCCceEEEeccccccc--cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcE
Q 028547 89 KYS--------------NRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGV 152 (207)
Q Consensus 89 ~~~--------------~~~~~~~~~~d~~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 152 (207)
... ...++++.++|+.++.+ -..+.||+|+....+.++ +.+......+.+.++|+|||.
T Consensus 84 e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al-----pp~~R~~Y~~~l~~lL~pgg~ 158 (226)
T PRK13256 84 QNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL-----PNDLRTNYAKMMLEVCSNNTQ 158 (226)
T ss_pred HcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcC-----CHHHHHHHHHHHHHHhCCCcE
Confidence 321 12478999999999842 123689999999999998 778999999999999999999
Q ss_pred EEEEEeC
Q 028547 153 YILVTYG 159 (207)
Q Consensus 153 ~~~~~~~ 159 (207)
+++.++.
T Consensus 159 llll~~~ 165 (226)
T PRK13256 159 ILLLVME 165 (226)
T ss_pred EEEEEEe
Confidence 9998863
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=129.31 Aligned_cols=119 Identities=16% Similarity=0.321 Sum_probs=97.8
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCee
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
...++..+..++..+|||+|||+|..+..+++....+|+++|+++.+++.++++.....++.+.+.|+.+. ++++++||
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~-~~~~~~FD 119 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK-DFPENTFD 119 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC-CCCCCCeE
Confidence 45566555444445999999999999988876533499999999999999999876556799999999876 67888999
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+|++..++.|+ +..+...++++++++|+|||.+++..+..
T Consensus 120 ~V~s~~~l~h~-----~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 120 MIYSRDAILHL-----SYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred EEEEhhhHHhC-----CHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 99998877776 33588999999999999999999987643
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-18 Score=121.40 Aligned_cols=102 Identities=25% Similarity=0.492 Sum_probs=88.6
Q ss_pred CcEEEEcCCCchhhHHHHh-cCC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccc--cCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGNSAFSEGMVD-DGY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDE--FQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~-~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~--~~~~~fD~v~~~~~ 122 (207)
.+|||+|||+|.++..+++ .+. .+++|+|+++++++.+++++.. ..+++|.+.|+.++ + ++ +.||+|++..+
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l-~~~~~-~~~D~I~~~~~ 82 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDL-PQELE-EKFDIIISNGV 82 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCG-CGCSS-TTEEEEEEEST
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcc-ccccC-CCeeEEEEcCc
Confidence 4999999999999999994 432 5999999999999999997652 25899999999996 4 33 79999999999
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
++++ .+...+++++.+.|+++|.+++..+.
T Consensus 83 l~~~-------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LHHF-------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GGGT-------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhc-------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9988 88899999999999999999998865
|
... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=134.14 Aligned_cols=106 Identities=22% Similarity=0.306 Sum_probs=92.1
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
.+.+|||+|||+|.++..+++....+|+|+|+++.+++.++++.... .++.|+++|+.+. ++++++||+|++...+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEEEECCch
Confidence 33599999999999999999863349999999999999998876532 4799999999987 6788999999999999
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+|+ .+...++++++++|+|||.+++.++..
T Consensus 197 ~h~-------~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 197 EHM-------PDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred hcc-------CCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 988 788899999999999999999987643
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.8e-18 Score=134.15 Aligned_cols=103 Identities=17% Similarity=0.305 Sum_probs=90.9
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+|||+|||+|.++..+++.+. +|+|+|+++++++.++++.... .++.+++.|+.++ ++..++||+|++..+++|
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-ADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-hhccCCCCEEEEhhHHHh
Confidence 4899999999999999998876 9999999999999999875421 4789999999887 456789999999999999
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+ .+...+++++.++|||||.+++.+...
T Consensus 211 v-------~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 211 V-------ANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred c-------CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 9 888999999999999999999987543
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=127.39 Aligned_cols=102 Identities=23% Similarity=0.352 Sum_probs=89.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
..+|||+|||+|.++..+++.+. +++++|+|+.+++.++++.. ...++++|+.++ ++++++||+|+++.++++.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~-~~~~~~fD~V~s~~~l~~~- 116 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA---ADHYLAGDIESL-PLATATFDLAWSNLAVQWC- 116 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC---CCCEEEcCcccC-cCCCCcEEEEEECchhhhc-
Confidence 34999999999999999988765 99999999999999988753 357889999887 5778899999999999987
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.++..++.++.++|+|||.+++.++...
T Consensus 117 ------~d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 117 ------GNLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred ------CCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 7889999999999999999999886553
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=121.82 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=84.5
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++.... -++.+...|+... ++ .++||+|++..++++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~-~~-~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAA-AL-NEDYDFIFSTVVFMF 106 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhc-cc-cCCCCEEEEeccccc
Confidence 345999999999999999999887 9999999999999998776432 2467777777654 33 357999999988887
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+ +..+...++++++++|+|||.+++..
T Consensus 107 ~-----~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 107 L-----QAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred C-----CHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 6 44678899999999999999976654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=119.86 Aligned_cols=102 Identities=25% Similarity=0.420 Sum_probs=84.2
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-CCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.++||+|||.|+.+.++++.|+ .|+++|.|+.+++.+++... ..-+++..+.|+.+.. + .+.||+|++..+++++
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~-~-~~~yD~I~st~v~~fL- 107 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD-F-PEEYDFIVSTVVFMFL- 107 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS---TTTEEEEEEESSGGGS-
T ss_pred CcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc-c-cCCcCEEEEEEEeccC-
Confidence 4999999999999999999999 99999999999998877654 2245889999998874 4 4789999998888887
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
..+..+.+++++.+.++|||.+++.++
T Consensus 108 ----~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 108 ----QRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp -----GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 667889999999999999999988664
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-17 Score=121.02 Aligned_cols=138 Identities=20% Similarity=0.348 Sum_probs=98.9
Q ss_pred hhchhhhhcccCCceeeecC-ccC--HHHHHHhhCCCCC-CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 028547 13 PWYWDNRYAHESGPFDWYQK-YPS--LAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK 88 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~-~~~--~~~~l~~~~~~~~-~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~ 88 (207)
.++|++.+.+. +.|.+... ++. ....+...++... .++||+|||.|.++..++.. +..++++|+++.+++.+++
T Consensus 6 ~~~l~~~la~~-DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~ 83 (201)
T PF05401_consen 6 YQLLNRELAND-DPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARE 83 (201)
T ss_dssp HHHHHHHHTSS-SGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHhCCC-CCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHH
Confidence 34566655544 44433211 221 2334443334332 49999999999999999998 5699999999999999999
Q ss_pred HccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 89 KYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 89 ~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+....+++.+.+.|+.+.. +.++||+|+++.+++++ .+.++...++.++...|+|||.+++.+.
T Consensus 84 Rl~~~~~V~~~~~dvp~~~--P~~~FDLIV~SEVlYYL----~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 84 RLAGLPHVEWIQADVPEFW--PEGRFDLIVLSEVLYYL----DDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp HTTT-SSEEEEES-TTT-----SS-EEEEEEES-GGGS----SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hcCCCCCeEEEECcCCCCC--CCCCeeEEEEehHhHcC----CCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9998889999999998874 78999999999999998 2235788999999999999999999875
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.5e-18 Score=126.03 Aligned_cols=141 Identities=23% Similarity=0.400 Sum_probs=110.3
Q ss_pred ChhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc
Q 028547 12 EPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (207)
Q Consensus 12 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~ 91 (207)
+.+||+++|.+....|+.......+.+.+.....+.+.+||..|||.|..+.++++.|+ +|+|+|+|+.+++.+.+...
T Consensus 2 ~~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~ 80 (218)
T PF05724_consen 2 DPEFWEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENN 80 (218)
T ss_dssp HHHHHHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCT
T ss_pred CHHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhc
Confidence 36799999999988888777777788888774444444999999999999999999998 99999999999999843221
Q ss_pred --------------CCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 92 --------------NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 92 --------------~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
...++.+.++|+.++.+-..++||+|+-...+.++ +++......+.+.++|+|||.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Al-----pp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 81 LEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCAL-----PPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp TEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS------GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred cCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccC-----CHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 11367899999999854344689999999999998 78899999999999999999955555
Q ss_pred e
Q 028547 158 Y 158 (207)
Q Consensus 158 ~ 158 (207)
+
T Consensus 156 l 156 (218)
T PF05724_consen 156 L 156 (218)
T ss_dssp E
T ss_pred E
Confidence 3
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-17 Score=126.42 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=91.1
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCe
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (207)
+..++..+....+.+|||+|||+|.++..+++... .+|+|+|+|+.+++.++++ ++.++++|+.++. +.++|
T Consensus 18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~--~~~~f 90 (255)
T PRK14103 18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDWK--PKPDT 90 (255)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhCC--CCCCc
Confidence 34556555444445999999999999999988742 4899999999999999763 6789999998762 45789
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|+|+++.+++++ .+...++++++++|+|||.+++...
T Consensus 91 D~v~~~~~l~~~-------~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 91 DVVVSNAALQWV-------PEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred eEEEEehhhhhC-------CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 999999999998 6889999999999999999998753
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-17 Score=126.17 Aligned_cols=117 Identities=21% Similarity=0.328 Sum_probs=98.4
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~ 113 (207)
..+++.+.-+++.+|||||||.|.++..+++..-.+|+|+++|+++.+.+++++... .+++++-.|..++. +.
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~----e~ 137 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE----EP 137 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc----cc
Confidence 344444444566799999999999999999984249999999999999999976632 37889999988874 34
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
||.|++.++++|+ +.+....++++++++|+|||.+++.+...+.
T Consensus 138 fDrIvSvgmfEhv-----g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 138 FDRIVSVGMFEHV-----GKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred cceeeehhhHHHh-----CcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 9999999999999 6688999999999999999999998876655
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=122.12 Aligned_cols=115 Identities=22% Similarity=0.342 Sum_probs=93.9
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCe
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~f 114 (207)
++.....+++.+|||+|||+|.++..+++. +. .+++++|+++.+++.++++.... .++.++++|+.+. +++.++|
T Consensus 37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~f 115 (231)
T TIGR02752 37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSF 115 (231)
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCc
Confidence 333333344459999999999999999876 33 49999999999999999886532 5789999999887 5677899
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|+|++...++++ .+...+++++.++|+|||.+++.+...+
T Consensus 116 D~V~~~~~l~~~-------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 116 DYVTIGFGLRNV-------PDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred cEEEEecccccC-------CCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 999999888887 6778999999999999999998775543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.5e-17 Score=115.85 Aligned_cols=110 Identities=29% Similarity=0.560 Sum_probs=89.3
Q ss_pred CHHHHHHhhCC--CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCC
Q 028547 35 SLAPLIKLYVP--SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 35 ~~~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (207)
.+.+.+..+.+ +...+|||+|||+|.++..+.+.++ +++++|+++.+++. .+..+...+.... ..+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--------~~~~~~~~~~~~~-~~~~~ 77 (161)
T PF13489_consen 8 AYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--------RNVVFDNFDAQDP-PFPDG 77 (161)
T ss_dssp CHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--------TTSEEEEEECHTH-HCHSS
T ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--------hhhhhhhhhhhhh-hcccc
Confidence 34555555442 3335999999999999999998888 99999999999888 2345555554554 35778
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+||+|++..+++|+ .++..+++++.++|+|||.+++.+....
T Consensus 78 ~fD~i~~~~~l~~~-------~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 78 SFDLIICNDVLEHL-------PDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SEEEEEEESSGGGS-------SHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred chhhHhhHHHHhhc-------ccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99999999999999 7899999999999999999999997653
|
... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=126.56 Aligned_cols=104 Identities=25% Similarity=0.334 Sum_probs=87.7
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHH--Hcc-CCCCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK--KYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~--~~~-~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
..+++|||+|||+|.++..++..+...|+|+|+|+.++..++. +.. ...++.|+.+|+.++ ++ .++||+|++.++
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-~~~FD~V~s~~v 198 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-LKAFDTVFSMGV 198 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-cCCcCEEEECCh
Confidence 3445999999999999999999887679999999998875433 222 235799999999988 45 788999999999
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++|+ .++..+++++++.|+|||.+++.+.
T Consensus 199 l~H~-------~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 199 LYHR-------RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred hhcc-------CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 9998 7889999999999999999998764
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-17 Score=108.64 Aligned_cols=95 Identities=31% Similarity=0.573 Sum_probs=79.9
Q ss_pred EEEEcCCCchhhHHHHhcC---C-CcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeC-cchh
Q 028547 51 ILIVGCGNSAFSEGMVDDG---Y-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDK-GTLD 124 (207)
Q Consensus 51 vLdiG~G~G~~~~~l~~~~---~-~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~-~~l~ 124 (207)
|||+|||+|..+..+.+.. . .+++++|+++++++.++++.... .++++++.|+.++ +...++||+|++. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l-~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL-PFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH-HHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC-cccCCCeeEEEEcCCccC
Confidence 7999999999999998873 2 59999999999999999988532 4899999999997 5678899999994 5588
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCc
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKG 151 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG 151 (207)
++ +.+....+++++.++|+|||
T Consensus 80 ~~-----~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HL-----SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GS-----SHHHHHHHHHHHHHTEEEEE
T ss_pred CC-----CHHHHHHHHHHHHHHhCCCC
Confidence 88 67899999999999999998
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=125.04 Aligned_cols=101 Identities=20% Similarity=0.300 Sum_probs=86.4
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.... .++++...|+.... . .++||+|++..+++++
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-~-~~~fD~I~~~~vl~~l- 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-I-QEEYDFILSTVVLMFL- 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-c-cCCccEEEEcchhhhC-
Confidence 3999999999999999999887 9999999999999998876532 36788888887763 3 6789999999999887
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+.+....+++++.++|+|||.++++.
T Consensus 198 ----~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 ----NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred ----CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 45688899999999999999977654
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=122.41 Aligned_cols=109 Identities=15% Similarity=0.303 Sum_probs=90.9
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCee
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
..++..+..+++.+|||+|||+|.++..+++... .+++++|+++.+++.++++. +++.|+..|+.++. +..+||
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~~--~~~~fD 95 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASWQ--PPQALD 95 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhccC--CCCCcc
Confidence 3445444334445999999999999999988642 59999999999999999876 46889999998763 456899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|+++.+++++ .+...+++++.++|+|||.+++..
T Consensus 96 ~v~~~~~l~~~-------~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 96 LIFANASLQWL-------PDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEEEccChhhC-------CCHHHHHHHHHHhcCCCcEEEEEC
Confidence 99999999998 678899999999999999998864
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-16 Score=124.13 Aligned_cols=105 Identities=24% Similarity=0.316 Sum_probs=86.4
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHH---HccCCCCceEEEeccccccccCCCCeeEEEeCc
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK---KYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~---~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
...+++|||+|||+|.++..++..+...|+|+|+|+.++..++. ......++.+...++.++. . ..+||+|++.+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp-~-~~~FD~V~s~g 196 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH-E-LYAFDTVFSMG 196 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC-C-CCCcCEEEEcc
Confidence 34445999999999999999998877689999999998876432 2233357788888888873 2 35899999999
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+++|+ .++...+++++++|+|||.+++.+.
T Consensus 197 vL~H~-------~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 197 VLYHR-------KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred hhhcc-------CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 99998 7889999999999999999999764
|
Known examples to date are restricted to the proteobacteria. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-16 Score=131.96 Aligned_cols=114 Identities=20% Similarity=0.330 Sum_probs=94.6
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEE
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
+++....+++.+|||+|||+|..+..+++....+++|+|+|+.+++.++++.... .++.|.+.|+.+. ++++++||+|
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~I 336 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKK-TYPDNSFDVI 336 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccC-CCCCCCEEEE
Confidence 4443333344599999999999999888763349999999999999998876533 4789999999887 5677899999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++..+++|+ .+...++++++++|+|||.+++.++..
T Consensus 337 ~s~~~l~h~-------~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 337 YSRDTILHI-------QDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred EECCccccc-------CCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 999999998 788999999999999999999987643
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-16 Score=122.47 Aligned_cols=112 Identities=21% Similarity=0.345 Sum_probs=86.8
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~ 113 (207)
.+++++.-+++.+|||||||.|.++..+++. |. +|+|+++|++..+.+++++... ..+.+...|..+.. .+
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~----~~ 127 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP----GK 127 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------S
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC----CC
Confidence 3344444455569999999999999999998 66 9999999999999999987743 36889999988763 28
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
||.|++.+++.|+ +.++...+++++.++|+|||.+++.++.
T Consensus 128 fD~IvSi~~~Ehv-----g~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 128 FDRIVSIEMFEHV-----GRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp -SEEEEESEGGGT-----CGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred CCEEEEEechhhc-----ChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 9999999999998 6789999999999999999999986643
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=117.61 Aligned_cols=98 Identities=19% Similarity=0.334 Sum_probs=83.0
Q ss_pred CcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+|||+|||+|.++..+++. +..+++|+|+|+.+++.++++. +++.+.++|+.+ ++++++||+|++..+++|+
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---~~~~~~~~d~~~--~~~~~sfD~V~~~~vL~hl- 118 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---PNINIIQGSLFD--PFKDNFFDLVLTKGVLIHI- 118 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---CCCcEEEeeccC--CCCCCCEEEEEECChhhhC-
Confidence 39999999999999999886 3359999999999999999875 357788888887 4678899999999999988
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+..+...+++++++++ ++.+++..+
T Consensus 119 ----~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 119 ----NPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred ----CHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 5568899999999998 467777664
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-16 Score=120.13 Aligned_cols=107 Identities=19% Similarity=0.288 Sum_probs=87.7
Q ss_pred hhCCCCCCcEEEEcCCCchhhHHHHhc--C-CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCee
Q 028547 42 LYVPSHHQRILIVGCGNSAFSEGMVDD--G-YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~G~~~~~l~~~--~-~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD 115 (207)
....... +|||+|||+|..+..+++. . ..+++++|+|+.+++.+++++... .++.++++|+.+. ++ ..+|
T Consensus 52 ~~~~~~~-~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~-~~--~~~D 127 (247)
T PRK15451 52 RFVQPGT-QVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-AI--ENAS 127 (247)
T ss_pred HhCCCCC-EEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC-CC--CCCC
Confidence 3334444 9999999999999888762 1 249999999999999999987632 4789999999886 33 3589
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|+++.+++++ +..+...+++++++.|+|||.+++.+
T Consensus 128 ~vv~~~~l~~l-----~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 128 MVVLNFTLQFL-----EPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred EEehhhHHHhC-----CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999999887 44567899999999999999999987
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-17 Score=121.35 Aligned_cols=99 Identities=28% Similarity=0.455 Sum_probs=85.5
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----C----CceEEEeccccccccCCCCeeEEEeC
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----P----QLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~----~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
++|||+|||+|.++..|++.|. +|+|+|+++++++.|++..... . ++.+.+.++.... +.||.|+|.
T Consensus 91 ~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~----~~fDaVvcs 165 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT----GKFDAVVCS 165 (282)
T ss_pred ceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc----cccceeeeH
Confidence 4799999999999999999987 9999999999999999874322 1 3556666766663 349999999
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
.+++|+ +++..+++.+.+.|+|+|.+++.+..
T Consensus 166 evleHV-------~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 166 EVLEHV-------KDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHHH-------hCHHHHHHHHHHHhCCCCceEeeehh
Confidence 999999 99999999999999999999998843
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.6e-16 Score=118.35 Aligned_cols=103 Identities=25% Similarity=0.440 Sum_probs=90.9
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+|||+|||+|.++..+++.+. .+++++|+++.++..++++.. .++.++..|+.+. +++.++||+|++..+++++
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~-~~~~~~fD~vi~~~~l~~~- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKL-PLEDSSFDLIVSNLALQWC- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhC-CCCCCceeEEEEhhhhhhc-
Confidence 4899999999999999998865 478999999999999998875 3788999999987 5677899999999999988
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.+...+++++.++|+|||.+++.++...
T Consensus 112 ------~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 112 ------DDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred ------cCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 7889999999999999999999876443
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-16 Score=113.82 Aligned_cols=116 Identities=15% Similarity=0.163 Sum_probs=90.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+.+|||+|||+|..+..++... ..+|+++|+++.+++.++++.... .+++++++|+.+.. . .++||+|+++.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~-~-~~~fDlV~~~~--- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG-Q-EEKFDVVTSRA--- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC-C-CCCccEEEEcc---
Confidence 3499999999999999888643 259999999999999999887643 46999999999874 3 67999999864
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccccCCCCceE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNI 176 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (207)
+ .....+++.++++|+|||.+++...........-+....+|.+
T Consensus 121 -~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 121 -V-------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKV 164 (187)
T ss_pred -c-------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceE
Confidence 2 4567899999999999999998875443333333345557775
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-16 Score=114.58 Aligned_cols=125 Identities=9% Similarity=0.124 Sum_probs=91.3
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+.+|||+|||+|.++..++..+. .+|+++|+++.+++.++++.... .+++++++|+.+.. ..++||+|++.. ++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~--~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ--HEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc--ccCCccEEEehh-hh
Confidence 44999999999999999887653 48999999999999888776532 47999999998862 457899999875 33
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccc-cCCCCceEEEEEEeeee
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML-RDSCSWNIKLHVIEKLV 185 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 185 (207)
+...+++.+.++|+|||.+++............+ ...+.|.+.....+...
T Consensus 120 ----------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 171 (181)
T TIGR00138 120 ----------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLT 171 (181)
T ss_pred ----------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccC
Confidence 4467888899999999999987533332222222 44445666555554443
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=114.36 Aligned_cols=110 Identities=16% Similarity=0.260 Sum_probs=96.1
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCe
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (207)
..+++...-.....+|.|+|||+|..+..++++.+ +.++|+|.|++|++.|+.+. ++++|..+|+.+.. +....
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aDl~~w~--p~~~~ 93 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEADLRTWK--PEQPT 93 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceecccHhhcC--CCCcc
Confidence 34555544444556999999999999999999865 69999999999999998887 57899999999995 67889
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+++++.+++|+ .+...++..+...|+|||++-+.-
T Consensus 94 dllfaNAvlqWl-------pdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 94 DLLFANAVLQWL-------PDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred chhhhhhhhhhc-------cccHHHHHHHHHhhCCCceEEEEC
Confidence 999999999999 899999999999999999998854
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.3e-16 Score=114.37 Aligned_cols=110 Identities=18% Similarity=0.330 Sum_probs=93.9
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC-------CCcEEEEeCCHHHHHHHHHHccCC-----CCceEEEeccccccccCCC
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG-------YEDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~-------~~~v~~~D~s~~~i~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~ 112 (207)
+....++||++||||..+..+.+.- .++|+++|+++.++..++++.... ..+.++++|+.++ ||++.
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-pFdd~ 176 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-PFDDD 176 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-CCCCC
Confidence 3444699999999999999888752 258999999999999999987422 3589999999999 79999
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
+||...+..-+... .++++.+++++|+|||||.|.+..|+...
T Consensus 177 s~D~yTiafGIRN~-------th~~k~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNV-------THIQKALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred cceeEEEecceecC-------CCHHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 99999876655554 89999999999999999999999988766
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=116.22 Aligned_cols=105 Identities=17% Similarity=0.268 Sum_probs=87.3
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC---CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEE
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG---YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
.+.. +|||+|||+|.++..+++.. ..+++|+|+++.+++.+++++... .++.++++|+.+. ++ ..+|+|+
T Consensus 52 ~~~~-~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~-~~--~~~d~v~ 127 (239)
T TIGR00740 52 TPDS-NVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-EI--KNASMVI 127 (239)
T ss_pred CCCC-EEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-CC--CCCCEEe
Confidence 3444 99999999999999888752 248999999999999999886532 4689999999887 33 3589999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+..+++++ ...+...++++++++|+|||.+++...
T Consensus 128 ~~~~l~~~-----~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 128 LNFTLQFL-----PPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred eecchhhC-----CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 99999987 445778999999999999999999874
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=114.87 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=79.2
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.... +|||+|||+|.++..+++....+|+|+|+|++|++.++++. .++++|+.++ |+++++||+|++...++
T Consensus 50 ~~~~-~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~l-p~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 50 GRPK-KVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------DKVVGSFEAL-PFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCC-eEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------ceEEechhhC-CCCCCCEEEEEecChhh
Confidence 3444 99999999999999998873239999999999999998752 4678899888 78999999999999999
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCC
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDK 150 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pg 150 (207)
++ .++...+++++++|||.
T Consensus 122 ~~-------~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 122 AS-------DNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred cc-------CCHHHHHHHHHHHhcCc
Confidence 88 88999999999999993
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-17 Score=110.01 Aligned_cols=95 Identities=24% Similarity=0.460 Sum_probs=62.9
Q ss_pred EEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCC--CceEEEeccccccc-cCCCCeeEEEeCcchhhhc
Q 028547 52 LIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRP--QLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 52 LdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~--~~~~~~~d~~~~~~-~~~~~fD~v~~~~~l~~~~ 127 (207)
||+|||+|.++..+.+... .+++++|+|+.+++.+++++.... +......+..+... ...++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 7999999999999988833 499999999999988887766432 23334433333311 123699999999999998
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVY 153 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~ 153 (207)
+++..++++++++|+|||.|
T Consensus 80 ------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ------S-HHHHHHHHTTT-TSS-EE
T ss_pred ------hhHHHHHHHHHHHcCCCCCC
Confidence 89999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=115.69 Aligned_cols=115 Identities=22% Similarity=0.397 Sum_probs=94.3
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccccCCCC
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~ 113 (207)
++..+...+..+|||+|||+|.++..++..+. .+++++|+++.+++.+++++.. ..++.+...|+.+. ++..++
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~ 121 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL-PFPDNS 121 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC-CCCCCC
Confidence 44443333345999999999999999988763 6999999999999999998754 25688999999887 456788
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
||+|++...++++ .+...+++++.++|+|||.+++.....+
T Consensus 122 ~D~I~~~~~l~~~-------~~~~~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 122 FDAVTIAFGLRNV-------PDIDKALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred ccEEEEecccccC-------CCHHHHHHHHHHhccCCcEEEEEEecCC
Confidence 9999998888877 7788999999999999999998775443
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=110.23 Aligned_cols=112 Identities=24% Similarity=0.315 Sum_probs=92.2
Q ss_pred hCCCCC-CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCce-EEEeccccccccCCCCeeEEE
Q 028547 43 YVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLK-YIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 43 ~~~~~~-~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~-~~~~d~~~~~~~~~~~fD~v~ 118 (207)
++.+.. ..|||+|||+|..-.+.-......||++|+++.|-+.+.+.+.+. .++. |+.++..++...+++++|.|+
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred HhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEE
Confidence 444444 278999999999988776543459999999999999998877643 3454 889999998447899999999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+..++... +++.+.|+++.++|||||.+++......
T Consensus 151 ~TlvLCSv-------e~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 151 CTLVLCSV-------EDPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred EEEEEecc-------CCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 99888876 9999999999999999999999886443
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5e-15 Score=120.15 Aligned_cols=113 Identities=23% Similarity=0.365 Sum_probs=90.4
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEE
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
+++.+..+++.+|||+|||+|.++..+++....+|+++|+|+++++.++++... .++.+...|..+. .++||.|+
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~-l~v~~~~~D~~~l----~~~fD~Iv 233 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG-LPVEIRLQDYRDL----NGQFDRIV 233 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-CeEEEEECchhhc----CCCCCEEE
Confidence 333333344459999999999999999886334999999999999999998754 3577777777654 36899999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+..+++++ +..+...+++++.++|+|||.+++.++..+
T Consensus 234 s~~~~ehv-----g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 234 SVGMFEHV-----GPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred EeCchhhC-----ChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 99999987 456778999999999999999999876443
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-15 Score=108.38 Aligned_cols=110 Identities=22% Similarity=0.386 Sum_probs=85.9
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCC-cEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
...+|||+|||+|.++..+++.+.. +++++|+++.+++.+++++... .+++++..|+.+. .+.++||+|+++.++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~--~~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA--LPDGKFDLIVSNPPF 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT--CCTTCEEEEEE---S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc--ccccceeEEEEccch
Confidence 3349999999999999999998763 7999999999999999987743 3488999998876 347899999999886
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+.- ...+......+++.+.++|+|||.++++....
T Consensus 109 ~~~--~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 109 HAG--GDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp BTT--SHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred hcc--cccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 642 01122357899999999999999998866433
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.9e-15 Score=100.75 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=80.2
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
..+|||+|||+|.++..+++... .+++++|+++.+++.++++... ..++.++..|+....+...++||.|++.....
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 34999999999999999998743 5899999999999999887653 25788888887753223346899999865433
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
....+++.+++.|+|||.+++..
T Consensus 100 ----------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 100 ----------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ----------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 34689999999999999999875
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-15 Score=118.05 Aligned_cols=102 Identities=25% Similarity=0.304 Sum_probs=87.8
Q ss_pred CCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
..+|||+|||+|.++..+++.. ..+++++|+++.+++.++++... .++.++.+|+.+. +++.++||+|++..+++++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~-~~i~~i~gD~e~l-p~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECKIIEGDAEDL-PFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-cCCeEEeccHHhC-CCCCCceeEEEEcChhhhC
Confidence 3499999999999988887752 34899999999999999987643 4788999999987 5778899999999999987
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.+....+++++++|+|||.+++...
T Consensus 192 -------~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 192 -------PDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred -------CCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 6778899999999999999988653
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-15 Score=112.43 Aligned_cols=115 Identities=27% Similarity=0.446 Sum_probs=94.7
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeE
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
++......++.+|||+|||+|.++..+++... .+++++|+++.+++.++++.....++.+..+|+.+. ++..++||+
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~ 109 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEAL-PFEDNSFDA 109 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcC-CCCCCcEEE
Confidence 33333333445999999999999999988765 489999999999999998875335789999999887 466778999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|++...++++ .+...+++++.++|+|||.+++..+..+
T Consensus 110 i~~~~~~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 147 (223)
T TIGR01934 110 VTIAFGLRNV-------TDIQKALREMYRVLKPGGRLVILEFSKP 147 (223)
T ss_pred EEEeeeeCCc-------ccHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 9998888877 7788999999999999999999876544
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-15 Score=110.40 Aligned_cols=96 Identities=25% Similarity=0.426 Sum_probs=83.2
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc-cccCCCCeeE
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-DEFQTGSFDS 116 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~fD~ 116 (207)
+++...+++.. +|||+|||.|.++..+.+....+.+|+|++++.+..+.++ .+.++++|+.+. ..+++++||.
T Consensus 5 ~~I~~~I~pgs-rVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 5 QIIAEWIEPGS-RVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred HHHHHHcCCCC-EEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhHhhCCCCCccE
Confidence 34555666666 9999999999999999886555999999999999988876 678999999985 3489999999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHh
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRV 146 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 146 (207)
|+++.+++++ ..+..+++++.|+
T Consensus 79 VIlsqtLQ~~-------~~P~~vL~EmlRV 101 (193)
T PF07021_consen 79 VILSQTLQAV-------RRPDEVLEEMLRV 101 (193)
T ss_pred EehHhHHHhH-------hHHHHHHHHHHHh
Confidence 9999999999 8999999999877
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=113.23 Aligned_cols=101 Identities=18% Similarity=0.295 Sum_probs=86.6
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
++|||+|||+|.++..+++... .+++++|+|+.+++.+++++... .++.+...|+.+. ++ .++||+|++..+++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~~-~~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-PF-PDTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-CC-CCCCCEeehHHHHH
Confidence 3799999999999999988642 48999999999999999987532 4689999998765 33 35899999999999
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++ .+...+++++.++|+|||.+++.++
T Consensus 79 ~~-------~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 79 HI-------KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred hC-------CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 88 6789999999999999999999875
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.8e-15 Score=111.43 Aligned_cols=105 Identities=25% Similarity=0.436 Sum_probs=89.7
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHcc-CCCCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
.++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++.. ...++.+...|+.+. ++..++||+|++..+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL-PFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC-CCCCCCceEEEEech
Confidence 444599999999999999998864 2589999999999999988733 235789999998876 467789999999999
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++++ .+...+++++.++|+|||.+++..+
T Consensus 97 ~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 97 LQHL-------EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred hhcc-------CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 9988 7889999999999999999998764
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=111.80 Aligned_cols=109 Identities=24% Similarity=0.363 Sum_probs=86.2
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHH--HHcc-CCCCceEEEeccccccccCCCCeeEEEeCc
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMM--KKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~--~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
.-.+++|||||||+|.++..|+..|.+.|+|+|.+.......+ +++. ....+.++...+.++ +. .+.||+|++-+
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~L-p~-~~~FDtVF~MG 190 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDL-PN-LGAFDTVFSMG 190 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhc-cc-cCCcCEEEEee
Confidence 3455699999999999999999999989999999997655532 2232 222344444566666 44 68899999999
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
++.|. .++...|+++.+.|++||.+++.+..-++
T Consensus 191 VLYHr-------r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g 224 (315)
T PF08003_consen 191 VLYHR-------RSPLDHLKQLKDSLRPGGELVLETLVIDG 224 (315)
T ss_pred ehhcc-------CCHHHHHHHHHHhhCCCCEEEEEEeeecC
Confidence 99998 99999999999999999999998864433
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.7e-15 Score=115.16 Aligned_cols=103 Identities=16% Similarity=0.279 Sum_probs=86.9
Q ss_pred CCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 48 HQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
+.+|||+|||+|..+..+++. +. .+|+++|+++.+++.++++.... .++.+..+|+.++ ++++++||+|+++.++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l-~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL-PVADNSVDVIISNCVI 156 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC-CCCCCceeEEEEcCcc
Confidence 349999999999988776664 33 37999999999999999876432 5788999999887 5677899999999888
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++. .+....+++++++|+|||.+++...
T Consensus 157 ~~~-------~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 157 NLS-------PDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred cCC-------CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 876 6778899999999999999999764
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=122.22 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=92.2
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc-cccCCCCeeE
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-DEFQTGSFDS 116 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~fD~ 116 (207)
.++..+...+..+|||+|||+|.++..+++.+. +++++|+++.+++.+++......++.+++.|+... .+++.++||+
T Consensus 28 ~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~ 106 (475)
T PLN02336 28 EILSLLPPYEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDL 106 (475)
T ss_pred HHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEE
Confidence 334333333444999999999999999998854 99999999999998876544346789999999742 2567789999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|++..+++++ +......+++++.++|+|||.+++...
T Consensus 107 I~~~~~l~~l-----~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 107 IFSNWLLMYL-----SDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred EehhhhHHhC-----CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 9999999988 445578999999999999999998753
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-15 Score=124.67 Aligned_cols=110 Identities=25% Similarity=0.336 Sum_probs=89.2
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccc-ccCCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~-~~~~~~fD~v~~~~~l~~ 125 (207)
.+|||+|||+|.++..+++... .+++|+|+|+.+++.++++.... .++.++++|+.++. .+++++||+|+++.++|+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~ 499 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHE 499 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHh
Confidence 4999999999999988887543 59999999999999999876432 46788889988762 167789999999999987
Q ss_pred hccCC------CChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 126 LLCGS------NSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 126 ~~~~~------~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+.... .+..+...++++++++|||||.+++...
T Consensus 500 L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 500 LFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 63211 1346889999999999999999999863
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=115.07 Aligned_cols=105 Identities=18% Similarity=0.249 Sum_probs=84.4
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+|||+|||+|.++..+++... .+++++|+++.+++.+++++... ...++...|+.+. ..+.||+|+++.++|..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~---~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD---IKGRFDMIISNPPFHDG 274 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc---cCCCccEEEECCCccCC
Confidence 4899999999999999998754 48999999999999999887643 2456777777653 35789999999988752
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
..........+++++.+.|+|||.++++..
T Consensus 275 --~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 --IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred --ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 111235678999999999999999998774
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-14 Score=105.12 Aligned_cols=109 Identities=17% Similarity=0.253 Sum_probs=85.7
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+|||+|||+|.++..+++.+. +++++|+++.+++.++++.... .++.+...|+.+. ..++||+|+++.++++..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCCCc
Confidence 4899999999999999999877 8999999999999999987532 4678888888765 235899999998876542
Q ss_pred cCC--------------CChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 128 CGS--------------NSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 128 ~~~--------------~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
... .+......+++++.++|+|||.+++......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 110 1122357789999999999999998875443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.7e-15 Score=113.02 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=83.4
Q ss_pred CcEEEEcCCCch----hhHHHHhcC-----C-CcEEEEeCCHHHHHHHHHHccC--------------------------
Q 028547 49 QRILIVGCGNSA----FSEGMVDDG-----Y-EDVVNVDISSVVIEAMMKKYSN-------------------------- 92 (207)
Q Consensus 49 ~~vLdiG~G~G~----~~~~l~~~~-----~-~~v~~~D~s~~~i~~~~~~~~~-------------------------- 92 (207)
.+|+|+|||+|. ++..+++.+ . .+|+|+|+|+.+++.|++....
T Consensus 101 ~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~ 180 (264)
T smart00138 101 VRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVK 180 (264)
T ss_pred EEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEC
Confidence 499999999995 444554432 1 3899999999999999885311
Q ss_pred ---CCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 93 ---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 93 ---~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..++.|.+.|+.+. +.+.++||+|+|.++++++ +......+++++++.|+|||.+++..
T Consensus 181 ~~ir~~V~F~~~dl~~~-~~~~~~fD~I~crnvl~yf-----~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 181 PELKERVRFAKHNLLAE-SPPLGDFDLIFCRNVLIYF-----DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred hHHhCcCEEeeccCCCC-CCccCCCCEEEechhHHhC-----CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 03689999999987 4467899999999999998 55677899999999999999999855
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-14 Score=112.09 Aligned_cols=106 Identities=25% Similarity=0.425 Sum_probs=82.5
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC----CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY----EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~----~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (207)
..+...+.....+|||+|||+|.++..+++... ..++|+|+|+.+++.++++. +++.+.++|+.++ |+++++
T Consensus 76 ~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~l-p~~~~s 151 (272)
T PRK11088 76 NLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHRL-PFADQS 151 (272)
T ss_pred HHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeecccC-CCcCCc
Confidence 334444444444899999999999998877522 27899999999999998875 4688999999887 688899
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
||+|++... ...++++.++|+|||.+++++....
T Consensus 152 fD~I~~~~~--------------~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 152 LDAIIRIYA--------------PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred eeEEEEecC--------------CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 999997532 1235788999999999999875543
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-14 Score=104.90 Aligned_cols=100 Identities=14% Similarity=0.138 Sum_probs=79.1
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
.++.+|||+|||+|.++..+++... .+++++|+++.+++.++++.... .++++++.|+... . .++||+|++...
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~--~-~~~~D~v~~~~~ 106 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE--L-PGKADAIFIGGS 106 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh--c-CcCCCEEEECCC
Confidence 3445999999999999999988754 49999999999999999876532 4688888887532 2 357999998754
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.. ....+++.+.+.|+|||.+++...
T Consensus 107 ~~----------~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 107 GG----------NLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred cc----------CHHHHHHHHHHhcCCCeEEEEEEe
Confidence 33 346788999999999999988653
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.1e-15 Score=100.47 Aligned_cols=108 Identities=25% Similarity=0.404 Sum_probs=86.3
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccc-ccCCCCeeEEEeCcchhh
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~-~~~~~~fD~v~~~~~l~~ 125 (207)
+|||+|||+|.++..+++.+..+++++|+++..++.++.++... .++++++.|+.+.. .++.++||+|+++.++..
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~ 82 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGP 82 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTS
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCcc
Confidence 89999999999999999998459999999999999999987742 57899999999873 367899999999988864
Q ss_pred hc-cCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 126 LL-CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 126 ~~-~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.. ...........+++.+.++|+|||.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 83 RSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp BTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 31 111223366889999999999999999876
|
... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.6e-15 Score=109.15 Aligned_cols=112 Identities=18% Similarity=0.147 Sum_probs=84.1
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEecc-cccc-ccCCCCeeEEEeCc
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDV-RQMD-EFQTGSFDSVVDKG 121 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~-~~~~-~~~~~~fD~v~~~~ 121 (207)
...+|||+|||+|.++..+++... .+++++|+++.+++.++++... ..++.++++|+ ..+. .++.++||.|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 334999999999999999988643 4899999999999999987653 25799999999 5541 15678899999864
Q ss_pred chhhhcc-CCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLC-GSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~-~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+..+... +.........++++++++|+|||.+++.+.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 4332200 001111357899999999999999998763
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-14 Score=115.32 Aligned_cols=105 Identities=19% Similarity=0.262 Sum_probs=84.9
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-----CCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
.+|||+|||+|.++..+++..+ .+|+++|+|+.+++.+++++... .++.+...|+.+. .+..+||+|+++.+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~--~~~~~fDlIlsNPP 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--VEPFRFNAVLCNPP 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--CCCCCEEEEEECcC
Confidence 4999999999999999998764 49999999999999999887522 2578888887664 34568999999988
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|... ..+......+++.+.++|+|||.++++.
T Consensus 308 fh~~~--~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQH--ALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCc--cCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 87531 1123456789999999999999999986
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=116.21 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=103.1
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS 91 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~ 91 (207)
++||...+.-.+..+.-....+.+.+.+...+.+.. +|||+|||+|.++..++.... .+++++|+|+.+++.++++..
T Consensus 218 ~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~~~~-rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~ 296 (423)
T PRK14966 218 REFYGRRFAVNPNVLIPRPETEHLVEAVLARLPENG-RVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAA 296 (423)
T ss_pred eeecCcEEEeCCCccCCCccHHHHHHHhhhccCCCC-EEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 556665555444444322233334443333334444 999999999999998887533 489999999999999999876
Q ss_pred CC-CCceEEEeccccccccCCCCeeEEEeCcchhh------------------hccCCCChhhHHHHHHHHHHhcCCCcE
Q 028547 92 NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS------------------LLCGSNSRQNATQMLKEVWRVLKDKGV 152 (207)
Q Consensus 92 ~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~------------------~~~~~~~~~~~~~~l~~~~~~L~pgG~ 152 (207)
.. .++.++++|+.+......++||+|+++.++.. +..+.++......+++.+.+.|+|||.
T Consensus 297 ~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~ 376 (423)
T PRK14966 297 DLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGF 376 (423)
T ss_pred HcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcE
Confidence 43 47899999987652112457999999976521 111223444577888888999999999
Q ss_pred EEEEE-eCCcccccccc
Q 028547 153 YILVT-YGAPIYRLGML 168 (207)
Q Consensus 153 ~~~~~-~~~~~~~~~~~ 168 (207)
+++.. +.+.......+
T Consensus 377 lilEiG~~Q~e~V~~ll 393 (423)
T PRK14966 377 LLLEHGFDQGAAVRGVL 393 (423)
T ss_pred EEEEECccHHHHHHHHH
Confidence 87754 34444444444
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.9e-14 Score=105.38 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=82.3
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~ 112 (207)
..+++.+..+++.+|||+|||+|.++..+++... .+|+++|+++.+++.+++++... .+++++..|+.+.. ....
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~-~~~~ 145 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW-EPLA 145 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC-cccC
Confidence 3444444444545999999999999999988743 25999999999999999987643 57999999998753 2346
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+||+|++......+ .+.+.+.|+|||.+++..
T Consensus 146 ~fD~Ii~~~~~~~~-------------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 146 PYDRIYVTAAGPKI-------------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCCEEEEcCCcccc-------------cHHHHHhcCcCcEEEEEE
Confidence 89999987554433 355788999999998865
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.4e-14 Score=103.83 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=81.0
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCC
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~ 113 (207)
+++.+..+++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++... .+++++.+|+.+..+ ...+
T Consensus 64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~ 142 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAP 142 (205)
T ss_pred HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCC
Confidence 3344333444599999999999998888752 248999999999999999887632 358899999987532 4578
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
||+|++...+.++ .+++.+.|+|||.+++..
T Consensus 143 fD~Ii~~~~~~~~-------------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 143 FDAIIVTAAASTI-------------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccEEEEccCcchh-------------hHHHHHhcCcCcEEEEEE
Confidence 9999998776654 246789999999998765
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.57 E-value=4e-14 Score=109.01 Aligned_cols=142 Identities=17% Similarity=0.201 Sum_probs=95.9
Q ss_pred hchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC
Q 028547 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 14 ~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
.+|...+......+........+...+.......+.+|||+|||+|.++..+++... .+++++|+++.+++.++++...
T Consensus 54 ~~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 133 (251)
T TIGR03534 54 EFYGLDFKVSPGVLIPRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR 133 (251)
T ss_pred eEeceEEEECCCcccCCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 445544443333333222222233333333333334999999999999999998743 4999999999999999988753
Q ss_pred C--CCceEEEeccccccccCCCCeeEEEeCcchhhhc-------------------cCCCChhhHHHHHHHHHHhcCCCc
Q 028547 93 R--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL-------------------CGSNSRQNATQMLKEVWRVLKDKG 151 (207)
Q Consensus 93 ~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~-------------------~~~~~~~~~~~~l~~~~~~L~pgG 151 (207)
. .++.++++|+.+. ++.++||+|+++.++.... .+..+......+++++.++|+|||
T Consensus 134 ~~~~~~~~~~~d~~~~--~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG 211 (251)
T TIGR03534 134 LGLDNVTFLQSDWFEP--LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGG 211 (251)
T ss_pred cCCCeEEEEECchhcc--CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCC
Confidence 2 4689999998774 4568899999987654310 001112234678999999999999
Q ss_pred EEEEEE
Q 028547 152 VYILVT 157 (207)
Q Consensus 152 ~~~~~~ 157 (207)
.+++..
T Consensus 212 ~~~~~~ 217 (251)
T TIGR03534 212 WLLLEI 217 (251)
T ss_pred EEEEEE
Confidence 999865
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.2e-14 Score=110.42 Aligned_cols=107 Identities=21% Similarity=0.259 Sum_probs=81.2
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCee
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD 115 (207)
.+..+..+. .+|||+|||+|.++..+++.+..+++++|+++.+++.++++.... .++.+...+... ...++||
T Consensus 152 ~l~~~~~~g-~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~---~~~~~fD 227 (288)
T TIGR00406 152 WLEDLDLKD-KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ---PIEGKAD 227 (288)
T ss_pred HHHhhcCCC-CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc---ccCCCce
Confidence 333443444 499999999999999998887679999999999999999987632 234455444222 3457899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+|+++...+ ....++.++.++|+|||.++++.+.
T Consensus 228 lVvan~~~~----------~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 228 VIVANILAE----------VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred EEEEecCHH----------HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 999975543 3467899999999999999998754
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.4e-14 Score=106.51 Aligned_cols=121 Identities=19% Similarity=0.177 Sum_probs=87.8
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCe
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~f 114 (207)
+...+......++.+|||+|||+|.++..+++.+..+++++|+++.+++.++++.... .++.++..|+.+. .+.++|
T Consensus 25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~--~~~~~f 102 (223)
T PRK14967 25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA--VEFRPF 102 (223)
T ss_pred HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh--ccCCCe
Confidence 3344443322333499999999999999999876569999999999999998876532 3577888888764 356789
Q ss_pred eEEEeCcchhhhc--------------cCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 115 DSVVDKGTLDSLL--------------CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 115 D~v~~~~~l~~~~--------------~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|+|+++.++..-. .+.........+++++.++|+|||.+++...
T Consensus 103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999986543210 0111223467788999999999999998653
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-14 Score=108.69 Aligned_cols=105 Identities=12% Similarity=0.196 Sum_probs=83.3
Q ss_pred CCCCcEEEEcCCCchhhHHH-H-hcCC-CcEEEEeCCHHHHHHHHHHccC----CCCceEEEeccccccccCCCCeeEEE
Q 028547 46 SHHQRILIVGCGNSAFSEGM-V-DDGY-EDVVNVDISSVVIEAMMKKYSN----RPQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l-~-~~~~-~~v~~~D~s~~~i~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
..+++|+|||||.|-++..+ + .... ++++++|+++++++.|++.+.. ..+++|..+|+.+.. ...+.||+|+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~-~~l~~FDlVF 200 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT-ESLKEYDVVF 200 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc-cccCCcCEEE
Confidence 35569999999988443333 3 3333 4899999999999999998843 157999999999863 2357899999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+. +++++ ...+...+++++++.|+|||.+++-.
T Consensus 201 ~~-ALi~~-----dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 201 LA-ALVGM-----DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred Ee-ccccc-----ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99 66655 44689999999999999999999976
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=103.82 Aligned_cols=114 Identities=23% Similarity=0.385 Sum_probs=94.7
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~ 128 (207)
.-|||||||+|.-+..+.+.|+ .++|+|+|+.|++.+.++-- .-.++.+|+-+..||+.++||-||+...++|+ |
T Consensus 52 ~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~---egdlil~DMG~GlpfrpGtFDg~ISISAvQWL-c 126 (270)
T KOG1541|consen 52 GLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL---EGDLILCDMGEGLPFRPGTFDGVISISAVQWL-C 126 (270)
T ss_pred cEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh---hcCeeeeecCCCCCCCCCccceEEEeeeeeee-c
Confidence 4999999999999999999987 99999999999999986421 13688889888779999999999999999887 4
Q ss_pred CC-----CChhhHHHHHHHHHHhcCCCcEEEEEEeCCccccccc
Q 028547 129 GS-----NSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGM 167 (207)
Q Consensus 129 ~~-----~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~ 167 (207)
.. .+...+..++..++.+|++|+..++..+.........
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~ 170 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDM 170 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHH
Confidence 43 3445677789999999999999999887666554443
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.1e-14 Score=103.40 Aligned_cols=102 Identities=18% Similarity=0.271 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
..+.+|||+|||+|.++..++.. +. .+++++|+++.+++.+++++... .++.++.+|+.+..+...+.||.|++.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 34459999999999999988764 32 48999999999999998876532 478899899877533334689999975
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
... .....+++.+.+.|+|||.+++..
T Consensus 119 ~~~----------~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 119 GGS----------EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCc----------ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 321 456788999999999999998744
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.56 E-value=7e-14 Score=109.34 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=84.0
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
+.+|||+|||+|.++..+++... .+++++|+|+.+++.++++.... .++.+++.|+.+. ++.++||+|+++.++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--LPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--cCCCCccEEEECCCC
Confidence 34899999999999999998743 49999999999999999987632 3689999998764 345689999998654
Q ss_pred hhh------------------ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSL------------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~------------------~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
... ..+..+......+++.+.++|+|||.+++..
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 221 0111223456788999999999999998865
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-14 Score=105.28 Aligned_cols=114 Identities=22% Similarity=0.249 Sum_probs=85.1
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccc--cCCCCeeEEEeC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDE--FQTGSFDSVVDK 120 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~--~~~~~fD~v~~~ 120 (207)
..+ +|||||||+|.++..+++..+ .+++|+|+++.+++.++++... ..|++++++|+.+..+ ++.+++|.|+++
T Consensus 16 ~~~-~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAP-LHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCc-eEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 344 999999999999999998754 5999999999999999887653 2589999999987521 345689999987
Q ss_pred cchhhhcc-CCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 121 GTLDSLLC-GSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 121 ~~l~~~~~-~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
.+..|... +....-....+++.++++|+|||.+++.+-..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 54333200 00011123678999999999999999887433
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-14 Score=105.31 Aligned_cols=109 Identities=18% Similarity=0.278 Sum_probs=89.9
Q ss_pred CcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccc-cCCCCeeEEEeCcch
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDE-FQTGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~-~~~~~fD~v~~~~~l 123 (207)
++|||+|||+|.++..++++. ..++++||+++++.+.|+++..-. .++.+++.|+.++.+ ....+||+|+|+.++
T Consensus 46 ~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPy 125 (248)
T COG4123 46 GRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPY 125 (248)
T ss_pred CeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCC
Confidence 499999999999999999984 369999999999999999987732 689999999999733 334579999999998
Q ss_pred hhhccC-CCC----------hhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCG-SNS----------RQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~-~~~----------~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
...... ..+ .-+.+.+++.+.++|||||.+.++.
T Consensus 126 f~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 126 FKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred CCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 765433 111 1268899999999999999999877
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-14 Score=104.16 Aligned_cols=144 Identities=21% Similarity=0.297 Sum_probs=107.5
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhCC---CCCCcEEEEcCCCchhhHHHHhcCC---CcEEEEeCCHHHHHHH
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVP---SHHQRILIVGCGNSAFSEGMVDDGY---EDVVNVDISSVVIEAM 86 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~---~~v~~~D~s~~~i~~~ 86 (207)
..||+..|....+.| +...+-+..-+..+.+ +.+.+|||+|||.|....-+.+... -.++++|.|+.+++..
T Consensus 36 ~k~wD~fy~~~~~rF--fkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~v 113 (264)
T KOG2361|consen 36 SKYWDTFYKIHENRF--FKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELV 113 (264)
T ss_pred hhhhhhhhhhccccc--cchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHH
Confidence 668999998887665 3332222222333322 2223799999999999988888643 2799999999999999
Q ss_pred HHHccCC-CCceEEEeccccc---cccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 87 MKKYSNR-PQLKYIKMDVRQM---DEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 87 ~~~~~~~-~~~~~~~~d~~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
+++.... .++...+.|+... .+...+++|+|.+..++.++ +.+.....+++++++|||||.+++.+|+...
T Consensus 114 k~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi-----~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 114 KKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI-----HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred HhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEecc-----ChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 9876533 3555555666653 34567899999999999888 6688999999999999999999999987654
Q ss_pred c
Q 028547 163 Y 163 (207)
Q Consensus 163 ~ 163 (207)
.
T Consensus 189 l 189 (264)
T KOG2361|consen 189 L 189 (264)
T ss_pred H
Confidence 4
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=105.61 Aligned_cols=105 Identities=24% Similarity=0.390 Sum_probs=87.0
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+..+|||+|||+|.++..+++.+. +++++|+++.+++.+++++... ..+.+...++.+......++||+|++..++++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 345999999999999999988865 8999999999999998876532 35677778877653234578999999988888
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+ .+...+++.+.++|+|||.+++....
T Consensus 127 ~-------~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 127 V-------PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred c-------CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 7 67788999999999999999987654
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=104.21 Aligned_cols=105 Identities=14% Similarity=0.246 Sum_probs=82.2
Q ss_pred CCcEEEEcCCCchhhHHHHh----cCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 48 HQRILIVGCGNSAFSEGMVD----DGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~----~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
+.+|||+|||+|.++..+++ .+. .+++|+|+++.+++.++++... .++.+...+...+ +..+++||+|+++.+
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l-~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDEL-VAEGERFDVVTSNHF 138 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEecccc-cccCCCccEEEECCe
Confidence 34999999999999888765 233 3899999999999999887643 4677777776665 346689999999999
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
++|+ +..+...+++++.++++ |.+++.++..+
T Consensus 139 lhh~-----~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 139 LHHL-----DDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred eecC-----ChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 9998 33446789999999998 56666665444
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=104.14 Aligned_cols=98 Identities=22% Similarity=0.358 Sum_probs=81.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
..+|||+|||+|.++..+++.+. +++|+|++++++..++++.... .++.|.+.|+.+. + ++||+|++..+++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~---~~fD~ii~~~~l~ 130 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL-C---GEFDIVVCMDVLI 130 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC-C---CCcCEEEEhhHHH
Confidence 34999999999999999998865 9999999999999999987632 3789999998876 2 7899999988887
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
++ +..+...+++++.+++++++++.+
T Consensus 131 ~~-----~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 131 HY-----PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred hC-----CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 76 446788899999999887655544
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-14 Score=109.05 Aligned_cols=113 Identities=20% Similarity=0.261 Sum_probs=86.1
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CC--ceEEEeccccccccCC
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQ--LKYIKMDVRQMDEFQT 111 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~--~~~~~~d~~~~~~~~~ 111 (207)
...+.++.+..+.. +|||+|||+|.+++..++.|..+++|+|+++.+++.++.|...+ .. ++....+.... ...
T Consensus 151 lcL~~Le~~~~~g~-~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~--~~~ 227 (300)
T COG2264 151 LCLEALEKLLKKGK-TVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV--PEN 227 (300)
T ss_pred HHHHHHHHhhcCCC-EEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh--ccc
Confidence 35566777766555 99999999999999999999989999999999999999988743 11 22222333332 134
Q ss_pred CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++||+|++|=.. +-+..+...+.+.|+|||.++++..-.
T Consensus 228 ~~~DvIVANILA----------~vl~~La~~~~~~lkpgg~lIlSGIl~ 266 (300)
T COG2264 228 GPFDVIVANILA----------EVLVELAPDIKRLLKPGGRLILSGILE 266 (300)
T ss_pred CcccEEEehhhH----------HHHHHHHHHHHHHcCCCceEEEEeehH
Confidence 699999998432 345788999999999999999987533
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=103.50 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=82.0
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC-C-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-Y-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~ 112 (207)
..++..+..+++.+|||+|||+|.++..+++.. . .+|+++|+++++++.+++++... .++.++++|..+.. ....
T Consensus 66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-~~~~ 144 (212)
T PRK13942 66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-EENA 144 (212)
T ss_pred HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-CcCC
Confidence 344444444444599999999999999888763 2 49999999999999999987632 57999999988763 3567
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+||+|++......+ .+.+.+.|+|||.+++..
T Consensus 145 ~fD~I~~~~~~~~~-------------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 145 PYDRIYVTAAGPDI-------------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCEEEECCCcccc-------------hHHHHHhhCCCcEEEEEE
Confidence 89999987554433 345677899999988854
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-13 Score=100.62 Aligned_cols=135 Identities=13% Similarity=0.129 Sum_probs=91.6
Q ss_pred CCCChhchhhhhcccCCceeeec--CccCH-HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHH
Q 028547 9 AYGEPWYWDNRYAHESGPFDWYQ--KYPSL-APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA 85 (207)
Q Consensus 9 ~~~~~~~w~~~~~~~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~ 85 (207)
.|-...++...|......+.... ....+ ..++..+..++..+|||+|||+|.++..+++... +++++|+++.+++.
T Consensus 37 ~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~ 115 (212)
T PRK00312 37 LFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWE 115 (212)
T ss_pred HcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHH
Confidence 34444555555655432222111 11122 2333333334445999999999999988887754 89999999999999
Q ss_pred HHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 86 MMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 86 ~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+++++... .++.+...|..+.. ...++||+|++...+.++ .+.+.+.|+|||.+++...
T Consensus 116 a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~~~~~~~~~-------------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 116 AKRRLKQLGLHNVSVRHGDGWKGW-PAYAPFDRILVTAAAPEI-------------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred HHHHHHHCCCCceEEEECCcccCC-CcCCCcCEEEEccCchhh-------------hHHHHHhcCCCcEEEEEEc
Confidence 99887642 46889999986642 234789999987655443 3567899999999998764
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=103.17 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCchhhHHHHhcC-C-CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc-------ccCCCCeeEE
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDG-Y-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-------EFQTGSFDSV 117 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~-~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~fD~v 117 (207)
++.+|||+|||+|.++..+++.. . ..|+++|+++. ...+++.++++|+.+.. ++..++||+|
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V 121 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVV 121 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEE
Confidence 33499999999999999998874 2 48999999881 12257899999999852 2457889999
Q ss_pred EeCcchhhhccCCCChh------hHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 118 VDKGTLDSLLCGSNSRQ------NATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~------~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
+++...++. +....+ ....+++.+.++|+|||.|++..+....
T Consensus 122 ~S~~~~~~~--g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 122 MSDMAPNMS--GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred ecCCCCccC--CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 998655542 111111 1356899999999999999998876643
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-13 Score=104.06 Aligned_cols=152 Identities=14% Similarity=0.222 Sum_probs=103.4
Q ss_pred CCCCCCCChhchhhhhccc-------CCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEE
Q 028547 5 TTTQAYGEPWYWDNRYAHE-------SGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNV 76 (207)
Q Consensus 5 ~~~~~~~~~~~w~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~ 76 (207)
.++..+....+|....... +.-|.+..-+.--.-++..+......+|||+|||.|.++..+++..+ .+++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmv 188 (300)
T COG2813 109 ENPPPFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLV 188 (300)
T ss_pred CCCCcccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEE
Confidence 3455555666666655411 23333322222223334444334334999999999999999999875 699999
Q ss_pred eCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 77 DISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 77 D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
|++..+++.+++++..+ .+..+...|..+. .. ++||+|+++.++|.- ..-...-...+++...+.|++||-+.
T Consensus 189 Dvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~--v~-~kfd~IisNPPfh~G--~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 189 DVNARAVESARKNLAANGVENTEVWASNLYEP--VE-GKFDLIISNPPFHAG--KAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred ecCHHHHHHHHHhHHHcCCCccEEEEeccccc--cc-ccccEEEeCCCccCC--cchhHHHHHHHHHHHHHhhccCCEEE
Confidence 99999999999998743 3445666666665 23 399999999999852 00011234489999999999999999
Q ss_pred EEEeCCc
Q 028547 155 LVTYGAP 161 (207)
Q Consensus 155 ~~~~~~~ 161 (207)
++..+..
T Consensus 264 iVan~~l 270 (300)
T COG2813 264 IVANRHL 270 (300)
T ss_pred EEEcCCC
Confidence 9886443
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-13 Score=105.90 Aligned_cols=143 Identities=17% Similarity=0.237 Sum_probs=97.6
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhC-CCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHc
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYV-PSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKY 90 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~ 90 (207)
..||...+......+......+.+.+.+.... ..+..+|||+|||+|.++..++.... .+++++|+++.+++.++++.
T Consensus 73 ~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~ 152 (275)
T PRK09328 73 AEFWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNA 152 (275)
T ss_pred ceEcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 34454444433333333333333444333222 23334999999999999999988753 59999999999999999987
Q ss_pred c-C-CCCceEEEeccccccccCCCCeeEEEeCcchhhh-------------------ccCCCChhhHHHHHHHHHHhcCC
Q 028547 91 S-N-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL-------------------LCGSNSRQNATQMLKEVWRVLKD 149 (207)
Q Consensus 91 ~-~-~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~-------------------~~~~~~~~~~~~~l~~~~~~L~p 149 (207)
. . ..++.++..|+.+. ...++||+|+++.++... ..+..+......+++++.++|+|
T Consensus 153 ~~~~~~~i~~~~~d~~~~--~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~ 230 (275)
T PRK09328 153 KHGLGARVEFLQGDWFEP--LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP 230 (275)
T ss_pred HhCCCCcEEEEEccccCc--CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc
Confidence 6 2 25789999998664 245789999998665321 11122345678889999999999
Q ss_pred CcEEEEEE
Q 028547 150 KGVYILVT 157 (207)
Q Consensus 150 gG~~~~~~ 157 (207)
||.+++..
T Consensus 231 gG~l~~e~ 238 (275)
T PRK09328 231 GGWLLLEI 238 (275)
T ss_pred CCEEEEEE
Confidence 99999854
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=109.82 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=91.3
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccc-cccCCCC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQM-DEFQTGS 113 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~-~~~~~~~ 113 (207)
.++..+.......+||||||+|.++..++...+ ..++|+|+++.++..+.++... ..|+.++++|+..+ ..+++++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s 192 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNS 192 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCc
Confidence 344444444334999999999999999999854 4999999999999999887653 36899999999764 3467889
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+|.|+++.+..|... ....-....+++.++++|+|||.+.+.|-.
T Consensus 193 ~D~I~lnFPdPW~Kk-rHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 193 VEKIFVHFPVPWDKK-PHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred eeEEEEeCCCCcccc-chhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 999998755443210 001112378999999999999999998743
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.6e-13 Score=96.20 Aligned_cols=146 Identities=16% Similarity=0.204 Sum_probs=102.2
Q ss_pred hhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEE
Q 028547 42 LYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
.+-++++.+++|+|||+|..+++++..++ .+++++|-++++++..++|..+. +|+.++.+++.+..+ ...++|.||
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~-~~~~~daiF 107 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP-DLPSPDAIF 107 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc-CCCCCCEEE
Confidence 44445555999999999999999996654 59999999999999998887643 799999999998743 222799999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccc--cCCCCceEEEEEEeeeeeeccCCCceee
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML--RDSCSWNIKLHVIEKLVVEEKSGHPIWE 196 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (207)
..+. ...+.+++.+...|+|||.+++....-.. ....+ ....++. +...+.............|.
T Consensus 108 IGGg-----------~~i~~ile~~~~~l~~ggrlV~naitlE~-~~~a~~~~~~~g~~-ei~~v~is~~~~lg~~~~~~ 174 (187)
T COG2242 108 IGGG-----------GNIEEILEAAWERLKPGGRLVANAITLET-LAKALEALEQLGGR-EIVQVQISRGKPLGGGTMFR 174 (187)
T ss_pred ECCC-----------CCHHHHHHHHHHHcCcCCeEEEEeecHHH-HHHHHHHHHHcCCc-eEEEEEeecceeccCeeEee
Confidence 8765 45689999999999999999986532221 11222 1112231 33333334444444445667
Q ss_pred eccCc
Q 028547 197 LTNPV 201 (207)
Q Consensus 197 ~~~~v 201 (207)
-.+||
T Consensus 175 ~~nPv 179 (187)
T COG2242 175 PVNPV 179 (187)
T ss_pred cCCCE
Confidence 77776
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-13 Score=106.77 Aligned_cols=107 Identities=16% Similarity=0.218 Sum_probs=84.1
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.+|||+|||+|.++..++.... .+++++|+++.+++.++++.... .++.|+++|+.+. ++..+||+|+++.++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~--~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP--LAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc--CcCCCccEEEECCCCC
Confidence 4899999999999999998754 59999999999999999987632 2489999998774 3445899999985542
Q ss_pred hh------------------ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SL------------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~------------------~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.- ..+..+......+++++.++|+|||.+++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 11 1122334578889999999999999998866
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=107.59 Aligned_cols=107 Identities=18% Similarity=0.211 Sum_probs=83.7
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.+|||+|||+|.++..++.... .+++++|+|+.+++.++++.... .++.++++|+.+. .+.++||+|+++.++.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~--l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA--LPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh--CCCCCccEEEECCCCC
Confidence 4899999999999999988743 49999999999999999987632 3589999998764 2456899999986542
Q ss_pred hh------------------ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SL------------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~------------------~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.. ..+..+......+++.+.++|+|||.+++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 11 0111233456788999999999999999865
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-13 Score=100.45 Aligned_cols=115 Identities=13% Similarity=0.144 Sum_probs=82.5
Q ss_pred CHHHHHHhhCC-CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccC
Q 028547 35 SLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQ 110 (207)
Q Consensus 35 ~~~~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~ 110 (207)
.+..++...+. +++.+|||+|||+|.++..+++... .+++++|+++.+++.+++++... .+++++.+|+.+..+..
T Consensus 27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~ 106 (196)
T PRK07402 27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL 106 (196)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC
Confidence 34443333333 3435999999999999999886532 59999999999999999887532 57889999886531112
Q ss_pred CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
...+|.++... . .....+++++.++|+|||.+++.....
T Consensus 107 ~~~~d~v~~~~----~-------~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 107 APAPDRVCIEG----G-------RPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CCCCCEEEEEC----C-------cCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 23457665421 1 355788999999999999999987543
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=106.90 Aligned_cols=111 Identities=24% Similarity=0.305 Sum_probs=82.5
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCe
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~f 114 (207)
..+.+..+..+.. +|||+|||||.+++..++.|.++|+++|+++.+++.+++|...+ -..++......+ ...++|
T Consensus 151 cl~~l~~~~~~g~-~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~---~~~~~~ 226 (295)
T PF06325_consen 151 CLELLEKYVKPGK-RVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED---LVEGKF 226 (295)
T ss_dssp HHHHHHHHSSTTS-EEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC---TCCS-E
T ss_pred HHHHHHHhccCCC-EEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc---cccccC
Confidence 4556666655555 99999999999999999999889999999999999999997732 122333322222 345899
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
|+|+++-..+ -+..++..+.+.|+|||.++++..-.
T Consensus 227 dlvvANI~~~----------vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 227 DLVVANILAD----------VLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp EEEEEES-HH----------HHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred CEEEECCCHH----------HHHHHHHHHHHhhCCCCEEEEccccH
Confidence 9999984433 44778888999999999999987533
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-13 Score=100.56 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=85.1
Q ss_pred eeeecCccCHHHHHHh----hCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEe
Q 028547 27 FDWYQKYPSLAPLIKL----YVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM 101 (207)
Q Consensus 27 ~~~~~~~~~~~~~l~~----~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~ 101 (207)
..|......+...+.. +..+++.+|||+|||+|.++..+++.. ...|+++|+++.+++.+.++.....|+.++.+
T Consensus 48 ~~~~~~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~ 127 (226)
T PRK04266 48 REWNPRRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILA 127 (226)
T ss_pred EEECCCccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEEC
Confidence 3455544344443332 222344599999999999999998863 24899999999999988776655468999999
Q ss_pred cccccc---ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 102 DVRQMD---EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 102 d~~~~~---~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+.+.. ++ .++||+|++.... ......+++++.++|||||.+++..
T Consensus 128 D~~~~~~~~~l-~~~~D~i~~d~~~---------p~~~~~~L~~~~r~LKpGG~lvI~v 176 (226)
T PRK04266 128 DARKPERYAHV-VEKVDVIYQDVAQ---------PNQAEIAIDNAEFFLKDGGYLLLAI 176 (226)
T ss_pred CCCCcchhhhc-cccCCEEEECCCC---------hhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 987531 12 3569999964221 1233556899999999999999943
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-13 Score=102.59 Aligned_cols=103 Identities=25% Similarity=0.372 Sum_probs=86.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-C-CceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-P-QLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~-~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++... . ++.+...|+.+......++||+|++..++++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 34999999999999999988766 7999999999999999877543 2 5888888888763222478999999999998
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+ .+...+++++.++|+|||.+++.+.
T Consensus 125 ~-------~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 125 V-------PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred C-------CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 8 7888999999999999999988764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-13 Score=103.15 Aligned_cols=109 Identities=11% Similarity=0.089 Sum_probs=82.2
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc-CCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF-QTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~fD~v~~~~~l~~~ 126 (207)
.+|||+|||+|.++..+++... .+++++|+++.+++.+++++... +.+++++|+.+..+. ..++||+|+++.++...
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-GGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 3899999999999999887632 48999999999999999987643 368899998764221 13579999999776421
Q ss_pred -------------------ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 127 -------------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 127 -------------------~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
..+..+.+....+++.+.++|+|||.+++...
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 01112233467888888999999999998763
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-13 Score=104.37 Aligned_cols=97 Identities=21% Similarity=0.213 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+.+|||+|||+|.++..+++.+..+++++|+++.+++.+++++... ++. +.... ...+.+||+|+++...
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~-~~~----~~~~~-~~~~~~fD~Vvani~~---- 189 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN-GVE----LNVYL-PQGDLKADVIVANILA---- 189 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc-CCC----ceEEE-ccCCCCcCEEEEcCcH----
Confidence 3499999999999999888887757999999999999999987642 221 10111 1112279999987433
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
.....+++++.++|+|||.+++..+..
T Consensus 190 ------~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 190 ------NPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred ------HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 334678999999999999999987543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-13 Score=100.05 Aligned_cols=94 Identities=24% Similarity=0.402 Sum_probs=76.4
Q ss_pred hCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc-cccCCCCeeEEEeCc
Q 028547 43 YVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-DEFQTGSFDSVVDKG 121 (207)
Q Consensus 43 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~fD~v~~~~ 121 (207)
.++... +|||+|||+|.++..+++.....++++|+++++++.++++ ++.+++.|+.+. .++++++||+|+++.
T Consensus 10 ~i~~~~-~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 10 LIPPGS-RVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred hcCCCC-EEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 344444 9999999999999988776444889999999999988653 578889998763 235678999999999
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCC
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKD 149 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~p 149 (207)
+++++ .+...+++++.+.+++
T Consensus 84 ~l~~~-------~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 84 TLQAT-------RNPEEILDEMLRVGRH 104 (194)
T ss_pred HhHcC-------cCHHHHHHHHHHhCCe
Confidence 99998 7888999998887654
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.2e-13 Score=108.22 Aligned_cols=165 Identities=39% Similarity=0.680 Sum_probs=135.6
Q ss_pred CCCCCCCCCChhchhhhhccc-CCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHH
Q 028547 3 MGTTTQAYGEPWYWDNRYAHE-SGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSV 81 (207)
Q Consensus 3 m~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~ 81 (207)
|......|.+..||+.++... ...++|+..+-.+...+..++....-++|.+|||.-.++..+.+.|+..++.+|+|+-
T Consensus 3 ~p~~~~~~~s~~~wd~rf~~rg~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V 82 (482)
T KOG2352|consen 3 LPQEQLSFGSVVYWDKRFQPRGSDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSV 82 (482)
T ss_pred CcccccccCcchhhhhhccccCCChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHH
Confidence 345667899999999999988 5889999988777777766655443489999999999999999999999999999999
Q ss_pred HHHHHHHHcc-CCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChh---hHHHHHHHHHHhcCCCcEEEEEE
Q 028547 82 VIEAMMKKYS-NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ---NATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 82 ~i~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~---~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.++.+..+.. ..+-.++...|+... .+++++||+|+..+.++++.+.....- .....+.+++++|++||.++.++
T Consensus 83 ~V~~m~~~~~~~~~~~~~~~~d~~~l-~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 83 VVAAMQVRNAKERPEMQMVEMDMDQL-VFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred HHHHHHhccccCCcceEEEEecchhc-cCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 9999988764 336688999999998 689999999999999999876654333 66778899999999999999999
Q ss_pred eC--Ccccccccc
Q 028547 158 YG--APIYRLGML 168 (207)
Q Consensus 158 ~~--~~~~~~~~~ 168 (207)
+. .+..+...+
T Consensus 162 l~~~vp~~r~~e~ 174 (482)
T KOG2352|consen 162 LVQVVPQGRKPEW 174 (482)
T ss_pred eeeeccCCCCeee
Confidence 84 444444433
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.9e-13 Score=103.68 Aligned_cols=153 Identities=20% Similarity=0.240 Sum_probs=103.7
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS 91 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~ 91 (207)
.+||.-.+.-....+.-......+.+.+.........+|||+|||||.++..++.... .+|+++|+|+.+++.|++|..
T Consensus 76 ~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~ 155 (280)
T COG2890 76 AEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAE 155 (280)
T ss_pred CeecceeeeeCCCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHH
Confidence 3455555555544444444443344433222233331699999999999999999876 499999999999999999987
Q ss_pred CC--CCceEEEeccccccccCCCCeeEEEeCcchhh------------------hccCCCChhhHHHHHHHHHHhcCCCc
Q 028547 92 NR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS------------------LLCGSNSRQNATQMLKEVWRVLKDKG 151 (207)
Q Consensus 92 ~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~------------------~~~~~~~~~~~~~~l~~~~~~L~pgG 151 (207)
.. .++.++..|+.+. .. ++||+|++|.++-. +..+.++.+....++..+.+.|+|||
T Consensus 156 ~~~l~~~~~~~~dlf~~--~~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g 232 (280)
T COG2890 156 RNGLVRVLVVQSDLFEP--LR-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGG 232 (280)
T ss_pred HcCCccEEEEeeecccc--cC-CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCc
Confidence 53 3455666666654 23 39999999977632 11222445678899999999999999
Q ss_pred EEEEEE-eCCcccccccc
Q 028547 152 VYILVT-YGAPIYRLGML 168 (207)
Q Consensus 152 ~~~~~~-~~~~~~~~~~~ 168 (207)
.+++.. +.+.......+
T Consensus 233 ~l~le~g~~q~~~v~~~~ 250 (280)
T COG2890 233 VLILEIGLTQGEAVKALF 250 (280)
T ss_pred EEEEEECCCcHHHHHHHH
Confidence 988866 34444444555
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-13 Score=105.25 Aligned_cols=111 Identities=20% Similarity=0.338 Sum_probs=85.5
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHcc-------CCCCceEEEeccccccccCCCCee
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS-------NRPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
..+.+++||++|||+|..+..+++. +..+|+++|+++.+++.+++.+. ..++++++.+|+.+......++||
T Consensus 73 ~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 73 AHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred hCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 3445569999999999999999887 44699999999999999999764 236789999999886433567899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|++...-.. +....-....+++.+.+.|+|||++++..
T Consensus 153 vIi~D~~dp~---~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 153 VIIVDSTDPV---GPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EEEECCCCCC---CchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9998643221 11112245788999999999999998753
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.48 E-value=8e-13 Score=105.69 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=88.5
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
+++.+|||+|||+|.++..++..+. .++|+|+++.++..+++++... .++.+.++|+.+. +.+.++||+|+++.++
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l-~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL-PLSSESVDAIATDPPY 258 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC-CcccCCCCEEEECCCC
Confidence 3445999999999999998887765 9999999999999999887632 4578999999987 5667899999998776
Q ss_pred hhhccC--CCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 124 DSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 124 ~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
...... .........+++++.++|+|||.+++.....
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 432110 0112346889999999999999998877544
|
This family is found exclusively in the Archaea. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.3e-13 Score=86.81 Aligned_cols=101 Identities=29% Similarity=0.445 Sum_probs=83.3
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc--CCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+|+|+|||+|.++..+++....+++++|+++..+..+++... ...++.+...|+.+.......+||+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence 589999999999999988444599999999999998884322 22578999999988743356789999999988862
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
......+++.+.+.|+|+|.+++.
T Consensus 80 -----~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -----VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 278899999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.8e-13 Score=104.82 Aligned_cols=104 Identities=17% Similarity=0.255 Sum_probs=84.7
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
++..+|||+|||+|.++..+++..+ .+++++|. +.+++.++++.... .+++++.+|+.+. +++ .+|+|++..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~-~~~--~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-SYP--EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC-CCC--CCCEEEeEh
Confidence 3335999999999999999999864 48999997 78899988876532 4689999999875 344 369999888
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++|.+ +.+....+++++++.|+|||.+++.++
T Consensus 224 ~lh~~-----~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSA-----NEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcC-----ChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 88865 445567899999999999999999875
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.2e-13 Score=97.05 Aligned_cols=110 Identities=25% Similarity=0.327 Sum_probs=83.6
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CC--ceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQ--LKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~--~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
.++++|||+|||+|.++..++..+. +++++|+++.+++.+++++... .+ +.++..|+.+. +....||+|+++.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n~ 98 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--FRGDKFDVILFNP 98 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc--ccccCceEEEECC
Confidence 3444899999999999999998854 9999999999999998876522 22 78888888774 3455899999986
Q ss_pred chhhh--------------ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSL--------------LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~--------------~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++... ..+..+......+++++.++|+|||.+++...
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 65321 01111234567889999999999999888764
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.2e-13 Score=104.63 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=79.9
Q ss_pred CcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC-C--CceEEEeccccccccCCC----CeeEEEe
Q 028547 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR-P--QLKYIKMDVRQMDEFQTG----SFDSVVD 119 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~-~--~~~~~~~d~~~~~~~~~~----~fD~v~~ 119 (207)
.+|||+|||+|..+..+++.. ..+|+++|+|+++++.+++++... + ++.++++|+.+..+.+.. ...++++
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 389999999999999998874 248999999999999998886532 3 456788998874223322 2345555
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..+++++ ...+...+++++++.|+|||.|++..
T Consensus 145 gs~~~~~-----~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 145 GSTIGNF-----TPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred cccccCC-----CHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 5666665 56788999999999999999998744
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=94.34 Aligned_cols=108 Identities=15% Similarity=0.216 Sum_probs=80.5
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEE
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
.+++......+.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++....+++++++|+.+. +++...||.|
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~-~~~~~~~d~v 81 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKF-DLPKLQPYKV 81 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcC-CccccCCCEE
Confidence 34444433444599999999999999999985 499999999999999999886556899999999998 3555679999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHh--cCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRV--LKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~--L~pgG~~~~~~ 157 (207)
+++.+++.. ...+.++.+. +.++|.+++..
T Consensus 82 i~n~Py~~~----------~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 82 VGNLPYNIS----------TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred EECCCcccH----------HHHHHHHHhcCCCcceEEEEEEH
Confidence 998776532 3334444432 34677776643
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=7e-13 Score=111.26 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=82.7
Q ss_pred CcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.+|||+|||+|.++..++... ..+++++|+|+.+++.++++.... .++.++++|+.+. .+.++||+|+++.++.
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--IEKQKFDFIVSNPPYI 217 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh--CcCCCccEEEECCCCC
Confidence 489999999999999888753 359999999999999999987532 3688999998764 3456899999986543
Q ss_pred h-------------------hccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 S-------------------LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~-------------------~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. +..+..+.+....+++.+.++|+|||.+++..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2 11122334566778899999999999998754
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-12 Score=94.48 Aligned_cols=109 Identities=13% Similarity=0.135 Sum_probs=89.6
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCC
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~ 112 (207)
....+++.+..+++.+|||||||+|+.+..+++... +|+++|..+...+.|++++... .|+.+.++|...-.+ ...
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~~a 137 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-EEA 137 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-CCC
Confidence 456667776666667999999999999999999855 9999999999999999998754 579999999999743 458
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+||.|+.......+ -+.+.+.|++||.+++..-
T Consensus 138 PyD~I~Vtaaa~~v-------------P~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEV-------------PEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCC-------------CHHHHHhcccCCEEEEEEc
Confidence 99999987665543 3445788999999998763
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=98.88 Aligned_cols=95 Identities=25% Similarity=0.366 Sum_probs=76.7
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
..+|||+|||+|.++..+++.+. .|+++|+++.+++.+++++... .++.+...|+.. ..++||+|++..+++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES----LLGRFDTVVCLDVLI 138 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh----ccCCcCEEEEcchhh
Confidence 34999999999999999998876 7999999999999999986532 368888888432 357899999999987
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGV 152 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 152 (207)
++ +.......++++.+.++++++
T Consensus 139 ~~-----~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 139 HY-----PQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred cC-----CHHHHHHHHHHHHhhcCCeEE
Confidence 76 446778888898887754443
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=103.06 Aligned_cols=96 Identities=19% Similarity=0.306 Sum_probs=74.8
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-------CCceEEEeccccccccCCCCeeEEEeC
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-------PQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
+.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.... .++.|...|+.+. +++||+|++.
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv~~ 219 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVTCL 219 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEEEc
Confidence 34999999999999999999876 9999999999999999986531 3577888887554 4689999999
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
.+++|+ +......+++.+.+. .++|+++
T Consensus 220 ~vL~H~-----p~~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 220 DVLIHY-----PQDKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred CEEEec-----CHHHHHHHHHHHHhh-cCCEEEE
Confidence 998876 334455677777654 5555544
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=102.30 Aligned_cols=111 Identities=24% Similarity=0.289 Sum_probs=83.0
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc----C----C----CCceEEEeccccc---cccCC--
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS----N----R----PQLKYIKMDVRQM---DEFQT-- 111 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~----~----~----~~~~~~~~d~~~~---~~~~~-- 111 (207)
.+|||+|||-|..+......+...++|+|++...|+.|+++.. . . -...|+..|.... ..++.
T Consensus 64 ~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~ 143 (331)
T PF03291_consen 64 LTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRS 143 (331)
T ss_dssp -EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTT
T ss_pred CeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccC
Confidence 4999999999988888888877899999999999999999982 0 0 1345677776643 11233
Q ss_pred CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
..||+|-|-..+|+.. . +++....+++++...|+|||.|+.+++....
T Consensus 144 ~~FDvVScQFalHY~F-e--se~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~ 191 (331)
T PF03291_consen 144 RKFDVVSCQFALHYAF-E--SEEKARQFLKNVSSLLKPGGYFIGTTPDSDE 191 (331)
T ss_dssp S-EEEEEEES-GGGGG-S--SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred CCcceeehHHHHHHhc-C--CHHHHHHHHHHHHHhcCCCCEEEEEecCHHH
Confidence 5999999999999873 2 5678888999999999999999999865543
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-12 Score=95.08 Aligned_cols=103 Identities=9% Similarity=0.055 Sum_probs=79.0
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++... .++.++++|+.+..+....+||+|+++.++..
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~- 133 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK- 133 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCCC-
Confidence 499999999999999876666679999999999999999987632 47899999998753223457999999988542
Q ss_pred ccCCCChhhHHHHHHHHHH--hcCCCcEEEEEEeC
Q 028547 127 LCGSNSRQNATQMLKEVWR--VLKDKGVYILVTYG 159 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~--~L~pgG~~~~~~~~ 159 (207)
......++.+.+ +|+|++++++....
T Consensus 134 -------g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 134 -------GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred -------ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 234455555554 47999998887643
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-12 Score=89.93 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=110.9
Q ss_pred CCCCCCCCCChhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCH
Q 028547 3 MGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISS 80 (207)
Q Consensus 3 m~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~ 80 (207)
|+++...+..+.-+++-|+...++|.-... +..-...+....++.++|||||+|..+.++++.. ...+.+.|+++
T Consensus 2 ~~tP~~~~~~~~~f~dVYEPaEDTFlLlDa---Lekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp 78 (209)
T KOG3191|consen 2 LSTPYTIHLIRLDFSDVYEPAEDTFLLLDA---LEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINP 78 (209)
T ss_pred CCCCchhhhhhhhhhhccCccchhhHHHHH---HHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCH
Confidence 677777777777778888888877743221 1112222333335589999999999999998863 34788999999
Q ss_pred HHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhhh--------------ccCCCChhhHHHHHHHHHH
Q 028547 81 VVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL--------------LCGSNSRQNATQMLKEVWR 145 (207)
Q Consensus 81 ~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~--------------~~~~~~~~~~~~~l~~~~~ 145 (207)
.+.+..++....+ .++..++.|+.... .+++.|+++.+.++.-- .-+.++.+-...++..+-.
T Consensus 79 ~A~~~Tl~TA~~n~~~~~~V~tdl~~~l--~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~ 156 (209)
T KOG3191|consen 79 EALEATLETARCNRVHIDVVRTDLLSGL--RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPD 156 (209)
T ss_pred HHHHHHHHHHHhcCCccceeehhHHhhh--ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhh
Confidence 9999988776633 56889999999863 55899999988766321 1223455668888899999
Q ss_pred hcCCCcEEEEEEe
Q 028547 146 VLKDKGVYILVTY 158 (207)
Q Consensus 146 ~L~pgG~~~~~~~ 158 (207)
+|.|.|+||+...
T Consensus 157 iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 157 ILSPRGVFYLVAL 169 (209)
T ss_pred hcCcCceEEeeeh
Confidence 9999999999885
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.5e-12 Score=95.59 Aligned_cols=108 Identities=18% Similarity=0.239 Sum_probs=83.0
Q ss_pred CcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+|||+|||+|.++..++... ..+++++|+++.+++.+++++ +++.+++.|+.+.. ...+||+|+++.++.+..
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---~~v~~v~~D~~e~~--~~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---PEAEWITSDVFEFE--SNEKFDVVISNPPFGKIN 140 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cCCEEEECchhhhc--ccCCCcEEEEcCCccccC
Confidence 499999999999998887753 249999999999999999875 46889999999873 356899999999988752
Q ss_pred cCCCCh-----------hh--HHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 128 CGSNSR-----------QN--ATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 128 ~~~~~~-----------~~--~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
...... +. ...++.....+|+|+|.+++...+.+
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc
Confidence 111000 11 35778888999999998877754434
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-12 Score=98.04 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=85.2
Q ss_pred eeecCccCHHHHHHh----hCCCCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCCCCceEEEe
Q 028547 28 DWYQKYPSLAPLIKL----YVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM 101 (207)
Q Consensus 28 ~~~~~~~~~~~~l~~----~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~ 101 (207)
.|.+..+.+.+.+.. +..++..+|||+|||+|.++..+++.- ...|+++|+++.+.+.+.+......|+.++..
T Consensus 109 ~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~ 188 (293)
T PTZ00146 109 VWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIE 188 (293)
T ss_pred eeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEEC
Confidence 465555566655532 212333499999999999999999873 24899999999766555554443368999999
Q ss_pred cccccc--ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 102 DVRQMD--EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 102 d~~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
|+.... ....+++|+|++... + . .....++.++.++|||||.|++.
T Consensus 189 Da~~p~~y~~~~~~vDvV~~Dva-~-p-------dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 189 DARYPQKYRMLVPMVDVIFADVA-Q-P-------DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CccChhhhhcccCCCCEEEEeCC-C-c-------chHHHHHHHHHHhccCCCEEEEE
Confidence 987531 123458999998753 1 1 45566777899999999999994
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.3e-12 Score=95.11 Aligned_cols=138 Identities=11% Similarity=0.163 Sum_probs=91.4
Q ss_pred CCCChhchhhhhccc----CCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc----CCCcEEEEeCCH
Q 028547 9 AYGEPWYWDNRYAHE----SGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD----GYEDVVNVDISS 80 (207)
Q Consensus 9 ~~~~~~~w~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~~~v~~~D~s~ 80 (207)
.+.+++|--+-|... ......+.....+...+........ +|||+|||+|.++..+++. ...+++++|+++
T Consensus 8 ~~~~~~f~~~n~~~~~~~~~~~~GqFfTP~~iAr~~~i~~~~~g-rVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~ 86 (241)
T PHA03412 8 TYEEKLFIIENFHEGAFTNNSELGAFFTPIGLARDFTIDACTSG-SVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH 86 (241)
T ss_pred cHHHHHHHHhhcccccccccccCCccCCCHHHHHHHHHhccCCC-EEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH
Confidence 344455544444433 2222334444444333321122334 9999999999999988874 224899999999
Q ss_pred HHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCC-----CChhhHHHHHHHHHHhcCCCcE
Q 028547 81 VVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGS-----NSRQNATQMLKEVWRVLKDKGV 152 (207)
Q Consensus 81 ~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~-----~~~~~~~~~l~~~~~~L~pgG~ 152 (207)
.+++.++++. .++.+++.|+.... .+++||+|+++.++..+.... .+......+++.+.+++++|+.
T Consensus 87 ~Al~~Ar~n~---~~~~~~~~D~~~~~--~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 87 TYYKLGKRIV---PEATWINADALTTE--FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred HHHHHHHhhc---cCCEEEEcchhccc--ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 9999999876 35789999998763 256899999999988653222 1223466788888886666654
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=95.68 Aligned_cols=101 Identities=19% Similarity=0.323 Sum_probs=78.6
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+.++|+|||+|..+.-+++. +.+|+++|+++.+++.+++..+.. ....+...+...+. -.+++.|+|++..++||
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~-g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL-GGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc-CCCcceeeehhhhhHHh
Confidence 38999999999777777776 669999999999999998876532 22334444444442 23789999999999999
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCc-EEEEEEeC
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKG-VYILVTYG 159 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG-~~~~~~~~ 159 (207)
+ +.+.+++.++++||++| ++.+-.+.
T Consensus 113 F--------dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 113 F--------DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred h--------chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 7 88999999999999866 66665554
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.2e-12 Score=96.34 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=85.0
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
+.+++|||||||+|.++..+++..+ .+++++|+++.+++.+++++.. .++++++.+|+.+......++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3445999999999999999987643 5899999999999999998752 26789999999875322346899999752
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
++.. ..........+++.+.+.|+|||++++...+.+
T Consensus 145 -~~~~--~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 145 -FDGE--GIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred -CCCC--CCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 2111 111112357999999999999999998655443
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=102.13 Aligned_cols=114 Identities=17% Similarity=0.265 Sum_probs=85.4
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccc-cCCCCeeEEEeCc
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDE-FQTGSFDSVVDKG 121 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~-~~~~~fD~v~~~~ 121 (207)
..++.+|||+|||+|..+..+++... ..|+++|+++.+++.+++++... .++.+++.|+.+... +..++||.|+++.
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 34445999999999999999988754 49999999999999999987643 346888999887532 2356899999876
Q ss_pred chhhhcc--CC------CCh-------hhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLC--GS------NSR-------QNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~--~~------~~~-------~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+...... .. ... .....+++.+.++|+|||.++++++
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 5432110 00 011 1245789999999999999999885
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=102.12 Aligned_cols=116 Identities=16% Similarity=0.272 Sum_probs=87.9
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeC
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
..++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++... .++.+.+.|+.++.....++||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 3444599999999999999888752 249999999999999999987643 468899999887632446789999987
Q ss_pred cchhhhccCCC-C-------h-------hhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 121 GTLDSLLCGSN-S-------R-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 121 ~~l~~~~~~~~-~-------~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
.+......... + . .....++.++.+.|+|||.++++|++-
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 66543321110 1 0 145778999999999999999999754
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.1e-12 Score=96.94 Aligned_cols=112 Identities=17% Similarity=0.284 Sum_probs=83.6
Q ss_pred hCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccccCCCCee
Q 028547 43 YVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 43 ~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
..++.+++||++|||+|..+..+++.. ..+++++|+++.+++.+++.+.. .++++++..|..+......++||
T Consensus 68 ~~~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 68 FTHPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred hcCCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCcc
Confidence 334555699999999999998888775 46899999999999999987642 25688888888775333457899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|++...... +....-....+++.+.+.|+|||++++..
T Consensus 148 vIi~D~~~~~---~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 148 VIIVDSTDPV---GPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEEEeCCCCC---CcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 9998643211 11111235788999999999999999864
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=88.79 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=67.3
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+++|+|+|||||.+++-.+-.|...|+++|+++++++.++++.... .++.|+++|+.+.. ..+|.++++.++..
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~----~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR----GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC----CccceEEECCCCcc
Confidence 34479999999999999999999889999999999999999998754 57999999999983 56899999998876
Q ss_pred h
Q 028547 126 L 126 (207)
Q Consensus 126 ~ 126 (207)
.
T Consensus 121 ~ 121 (198)
T COG2263 121 Q 121 (198)
T ss_pred c
Confidence 5
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=107.94 Aligned_cols=122 Identities=15% Similarity=0.113 Sum_probs=90.4
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----CCceEEEeccccccccCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~ 112 (207)
...+..+. + +++|||+|||+|.++..++..|..+|+++|+|+.+++.+++++... .+++++++|+.+......+
T Consensus 530 R~~~~~~~-~-g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~ 607 (702)
T PRK11783 530 RRMIGQMA-K-GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEARE 607 (702)
T ss_pred HHHHHHhc-C-CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCC
Confidence 34444433 2 3499999999999999999987768999999999999999988632 3689999999875322256
Q ss_pred CeeEEEeCcchhhhccC----CCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 113 SFDSVVDKGTLDSLLCG----SNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~----~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+||+|+++.+...-.-. .....+...++..+.++|+|||.+++.+...
T Consensus 608 ~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 608 QFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred CcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 89999998664321000 0112467788899999999999998876544
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-11 Score=96.36 Aligned_cols=106 Identities=16% Similarity=0.105 Sum_probs=78.3
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 113 (207)
.+++....+++.+|||+|||+|.++..+++... ..|+++|+++++++.+++++.. ..++.++++|+.+.. ....+
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~-~~~~~ 149 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV-PEFAP 149 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc-cccCC
Confidence 334433333445999999999999999988642 3699999999999999987653 257889999987752 23467
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
||+|++...+..+ ...+.+.|+|||.+++..
T Consensus 150 fD~Ii~~~g~~~i-------------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEV-------------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHh-------------HHHHHHhcCCCCEEEEEe
Confidence 9999986443322 334678999999988754
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-12 Score=90.12 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=70.9
Q ss_pred EEEeCCHHHHHHHHHHccC-----CCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcC
Q 028547 74 VNVDISSVVIEAMMKKYSN-----RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLK 148 (207)
Q Consensus 74 ~~~D~s~~~i~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~ 148 (207)
+|+|+|+.|++.|+++... ..+++++++|+.++ |+++++||+|++..+++++ .+...++++++++||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~~l~~~-------~d~~~~l~ei~rvLk 72 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PFDDCEFDAVTMGYGLRNV-------VDRLRAMKEMYRVLK 72 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CCCCCCeeEEEecchhhcC-------CCHHHHHHHHHHHcC
Confidence 4899999999999876542 14689999999998 6888899999999999988 789999999999999
Q ss_pred CCcEEEEEEeCCcc
Q 028547 149 DKGVYILVTYGAPI 162 (207)
Q Consensus 149 pgG~~~~~~~~~~~ 162 (207)
|||.+++.++..+.
T Consensus 73 pGG~l~i~d~~~~~ 86 (160)
T PLN02232 73 PGSRVSILDFNKSN 86 (160)
T ss_pred cCeEEEEEECCCCC
Confidence 99999999887654
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=94.11 Aligned_cols=115 Identities=12% Similarity=0.119 Sum_probs=85.3
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
+++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++... .++.+++.|+.... ...+.||.|++..
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG-AAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh-hhccCCCEEEEcC
Confidence 444599999999999999988752 248999999999999999987643 47888999987762 3445799999876
Q ss_pred chhhhccCC--------CCh-------hhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 122 TLDSLLCGS--------NSR-------QNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 122 ~l~~~~~~~--------~~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+......-. ... .....+++.+.+.|+|||.+++++++-.
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 544321000 011 1345699999999999999999986543
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=100.63 Aligned_cols=116 Identities=14% Similarity=0.176 Sum_probs=85.7
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----CCceEEEeccccccc-c--CCCCeeEEEeC
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVRQMDE-F--QTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d~~~~~~-~--~~~~fD~v~~~ 120 (207)
+++|||+|||+|.++..++..+..+|+++|+++.+++.+++++... .+++++++|+.+... + ..++||+|+++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 3499999999999998877766669999999999999999987632 268899999988521 1 24689999998
Q ss_pred cchhhhccC--CCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 121 GTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 121 ~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
.+...-... .........+++.+.++|+|||.++..+++....
T Consensus 301 PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~ 345 (396)
T PRK15128 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT 345 (396)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC
Confidence 775321000 0001245666677899999999999888665543
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-11 Score=95.90 Aligned_cols=109 Identities=17% Similarity=0.299 Sum_probs=82.9
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccc-cCCCCeeE
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDE-FQTGSFDS 116 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~-~~~~~fD~ 116 (207)
.+.+++||+||||.|..+..+++.. ..+++.+|+++.+++.+++.+.. .++++++.+|+.+... .+.++||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3445699999999999999998874 35899999999999999997652 3689999999877522 23568999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
|++...-.. +....-....+++.+.+.|+|||+++..
T Consensus 169 Ii~D~~dp~---~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPV---GPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCC---CchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 998532211 1111224578899999999999999763
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=96.62 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=83.8
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHc--c-------CCCCceEEEeccccccccCCCCe
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKY--S-------NRPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~--~-------~~~~~~~~~~d~~~~~~~~~~~f 114 (207)
..++++||++|||+|..+..+++.. ..+++++|+++++++.|++.. . ..++++++.+|+.+......+.|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 4445599999999999998888864 369999999999999999721 1 23689999999998644456789
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+|++... +.. ...........+++.+.+.|+|||++++..
T Consensus 228 DVIIvDl~-DP~-~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 228 DVIIIDFP-DPA-TELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred cEEEEcCC-Ccc-ccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99998732 111 000122355789999999999999998764
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-11 Score=100.70 Aligned_cols=115 Identities=15% Similarity=0.176 Sum_probs=84.6
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
+++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++... .++.+++.|+.+....-.++||+|++..
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 344599999999999999998852 359999999999999999987643 4689999999876211126899999876
Q ss_pred chhhhccCC--------CChh-------hHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 122 TLDSLLCGS--------NSRQ-------NATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 122 ~l~~~~~~~--------~~~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+........ .... ....+++.+.++|+|||.+++++++-
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 543221000 0111 23568999999999999999887643
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-11 Score=100.00 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=86.1
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccc---cCCCCeeEE
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDE---FQTGSFDSV 117 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~---~~~~~fD~v 117 (207)
.+++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++... .++.+++.|+.+... ...++||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 3444599999999999999988862 248999999999999999987643 578999999987621 335789999
Q ss_pred EeCcchhhhcc-CCCC-------hh-------hHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 118 VDKGTLDSLLC-GSNS-------RQ-------NATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 118 ~~~~~l~~~~~-~~~~-------~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++..+...... ...+ .. ....+++++.+.|||||.+++++++-
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 98655332210 0000 11 25788999999999999999988644
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-12 Score=95.65 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=86.2
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc-cCCCC
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE-FQTGS 113 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~ 113 (207)
.+.++|.......-+++||+|||||.....+-..- ..++|+|+|+.|++.+.++-.- -...+.++..+.+ ..++.
T Consensus 113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg~Y---D~L~~Aea~~Fl~~~~~er 188 (287)
T COG4976 113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKGLY---DTLYVAEAVLFLEDLTQER 188 (287)
T ss_pred HHHHHHHhccCCccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhccch---HHHHHHHHHHHhhhccCCc
Confidence 34455544433333599999999999998888774 4999999999999999886321 1334445554422 45789
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
||+|.+..++.++ -..+.++-.+...|+|||.|.+++
T Consensus 189 ~DLi~AaDVl~Yl-------G~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 189 FDLIVAADVLPYL-------GALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred ccchhhhhHHHhh-------cchhhHHHHHHHhcCCCceEEEEe
Confidence 9999999999999 788999999999999999999976
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=91.87 Aligned_cols=109 Identities=15% Similarity=0.184 Sum_probs=80.8
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccC
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQ 110 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~ 110 (207)
....+++.+..+++.+|||||||+|+.+..++.. +. ..|+++|..+...+.|++++.. ..|+.++++|.....+ .
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-~ 138 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP-E 138 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-G
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc-c
Confidence 3455666555555569999999999999999886 32 3699999999999999999873 3589999999887643 4
Q ss_pred CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..+||.|++......+ -..+.+.|++||.+++..
T Consensus 139 ~apfD~I~v~~a~~~i-------------p~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEI-------------PEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp G-SEEEEEESSBBSS---------------HHHHHTEEEEEEEEEEE
T ss_pred CCCcCEEEEeeccchH-------------HHHHHHhcCCCcEEEEEE
Confidence 5789999987665533 234677899999999866
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.5e-11 Score=99.31 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=84.5
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
.++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++... .++.+++.|+.+.. +.++||.|++..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~ 326 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDA 326 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcC
Confidence 344599999999999888887642 248999999999999999887643 46889999998763 456899999764
Q ss_pred chhhhcc-CC-------CChh-------hHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 122 TLDSLLC-GS-------NSRQ-------NATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 122 ~l~~~~~-~~-------~~~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+...... .. ...+ ....++..+.+.|+|||.+++.+++-.
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 4322110 00 0111 245789999999999999999997553
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.4e-11 Score=91.21 Aligned_cols=99 Identities=17% Similarity=0.261 Sum_probs=82.5
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
....+|+|||+|.|.++..+++..+ .+++.+|. |..++.+++ ..+++++.+|+.+ ++|. +|+++...++|
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f~--~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFFD--PLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TTT--CCSS--ESEEEEESSGG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHHh--hhcc--ccceeeehhhh
Confidence 3445999999999999999999865 48999997 778888887 3689999999994 4565 99999999999
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCC--cEEEEEEe
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDK--GVYILVTY 158 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pg--G~~~~~~~ 158 (207)
.+ +.++...+|+++++.|+|| |.+++...
T Consensus 170 ~~-----~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 170 DW-----SDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GS------HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hc-----chHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 87 7889999999999999999 99999874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-11 Score=89.77 Aligned_cols=104 Identities=14% Similarity=0.228 Sum_probs=80.3
Q ss_pred CcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC-------C--------------------------
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-------P-------------------------- 94 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~-------~-------------------------- 94 (207)
+.+|||||.+|.++..+++.. +..+.|+||++..|+.|++.++.- .
T Consensus 60 ~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~ 139 (288)
T KOG2899|consen 60 KQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTT 139 (288)
T ss_pred ceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccccc
Confidence 489999999999999999974 468999999999999999876421 0
Q ss_pred ----Cce-------EEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 95 ----QLK-------YIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 95 ----~~~-------~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
++. +...|+.+ +....||+|+|-.+--|+ .-+++.+.+..++++++++|.|||+|++.
T Consensus 140 ~~p~n~~f~~~n~vle~~dfl~---~~~~~fDiIlcLSiTkWI-HLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 140 DFPDNVWFQKENYVLESDDFLD---MIQPEFDIILCLSITKWI-HLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cCCcchhcccccEEEecchhhh---hccccccEEEEEEeeeeE-ecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 111 11122221 346689999997766655 45667789999999999999999999985
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-11 Score=88.04 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc-------ccCCCCeeEEE
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-------EFQTGSFDSVV 118 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~fD~v~ 118 (207)
+.+|||+|||+|.++..++.... .+++++|+++.+ ...++.+++.|+.+.. ..+.++||+|+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~ 103 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM 103 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence 34999999999999998887642 479999999854 1246788888887641 13466899999
Q ss_pred eCcchhhhc----cCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 119 DKGTLDSLL----CGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 119 ~~~~l~~~~----~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+....+... .+.........+++.++++|+|||.+++..+.
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 865422100 00001123578999999999999999987644
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-11 Score=94.36 Aligned_cols=117 Identities=24% Similarity=0.338 Sum_probs=91.8
Q ss_pred HhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----C----CceEEEeccccc-----c
Q 028547 41 KLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----P----QLKYIKMDVRQM-----D 107 (207)
Q Consensus 41 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~----~~~~~~~d~~~~-----~ 107 (207)
..+.++.. .++++|||.|..+....+.|...++|+||++-.|+.|+++..+. . ...|+.+|.... .
T Consensus 112 ~~y~~~~~-~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 112 NLYTKRGD-DVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL 190 (389)
T ss_pred HHHhcccc-ccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc
Confidence 34444444 89999999999999888888889999999999999999987632 1 367888887763 2
Q ss_pred ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 108 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
++.+.+||+|-|-.++|+- + .+++....++.++++.|+|||+|+.+.....
T Consensus 191 e~~dp~fDivScQF~~HYa-F--etee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 191 EFKDPRFDIVSCQFAFHYA-F--ETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred cCCCCCcceeeeeeeEeee-e--ccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 2234459999998888864 1 2557889999999999999999999875444
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.3e-11 Score=106.29 Aligned_cols=144 Identities=13% Similarity=0.062 Sum_probs=96.8
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhCCC---CCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHH
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPS---HHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMK 88 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~ 88 (207)
++||.-.+.-.+.-+.-......+.+.+... +. .+.+|||+|||+|.++..+++... .+++++|+|+.+++.+++
T Consensus 82 ~~F~~l~~~V~p~VLIPRpeTE~lve~L~~~-~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~ 160 (1082)
T PLN02672 82 RNRKKLTMMEIPSIFIPEDWSFTFYEGLNRH-PDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWI 160 (1082)
T ss_pred EEecCCceeeCCCcccCchhHHHHHHHHHhc-ccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 4555555544444433333333333333221 11 124899999999999999998754 599999999999999998
Q ss_pred HccCC------------------CCceEEEeccccccccCCCCeeEEEeCcchhh------hc-----------------
Q 028547 89 KYSNR------------------PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS------LL----------------- 127 (207)
Q Consensus 89 ~~~~~------------------~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~------~~----------------- 127 (207)
|.... .++.|++.|+.+...-....||+|+++.++-. +.
T Consensus 161 Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p 240 (1082)
T PLN02672 161 NLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN 240 (1082)
T ss_pred HHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence 87531 36899999998763111236999999976421 00
Q ss_pred ----c----CCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 128 ----C----GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 128 ----~----~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. +.++......++.++.++|+|||.+++..
T Consensus 241 ~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred cccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 0 13344566888888999999999998865
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=96.08 Aligned_cols=118 Identities=15% Similarity=0.242 Sum_probs=82.6
Q ss_pred hCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC-CCceE--EEeccccccc-cCCCCeeEE
Q 028547 43 YVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-PQLKY--IKMDVRQMDE-FQTGSFDSV 117 (207)
Q Consensus 43 ~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~--~~~d~~~~~~-~~~~~fD~v 117 (207)
+.+.++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++... -.+.+ ..+|..+... ...++||.|
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEE
Confidence 334444599999999999999988753 259999999999999999987643 12333 5556554421 145689999
Q ss_pred EeCcchhhhcc-CCCC-------h-------hhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 118 VDKGTLDSLLC-GSNS-------R-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 118 ~~~~~l~~~~~-~~~~-------~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++..+...... ...+ . .....+++++.++|||||.+++++++-
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 97655443211 0001 1 125789999999999999999998754
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.4e-11 Score=97.38 Aligned_cols=99 Identities=16% Similarity=0.276 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEecccccc---ccCCCCeeEEEeC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMD---EFQTGSFDSVVDK 120 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~---~~~~~~fD~v~~~ 120 (207)
.++.+|||+|||+|.++..+++.+ .+++++|+|+.+++.+++++.. ..++.|+++|+.+.. ++...+||+|+++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 333599999999999999999886 4999999999999999998753 257999999997642 1345679999987
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.+... ....++.+.+ ++|++++|++
T Consensus 375 PPr~g----------~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 375 PPRAG----------AAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred cCCcC----------hHHHHHHHHh-cCCCeEEEEE
Confidence 65432 2345555555 6888877764
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.7e-11 Score=90.46 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=78.4
Q ss_pred CCcEEEEcCCCchhhHHHHhc-C-CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccccc-----CCCCeeEE
Q 028547 48 HQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEF-----QTGSFDSV 117 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~-----~~~~fD~v 117 (207)
+++|||+|||+|.-+..++.. . ..+++++|++++.++.+++++... .+++++.+|+.+..+. +.++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 349999999999988888764 2 259999999999999999987643 4689999999875221 14689999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+.... ......+++.+.+.|+|||++++..
T Consensus 149 fiDa~----------k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 149 FVDAD----------KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EECCC----------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 96532 1345678899999999999988744
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-11 Score=88.46 Aligned_cols=108 Identities=20% Similarity=0.292 Sum_probs=80.1
Q ss_pred cEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc--CCCCceEEEecccccc--ccCCCCeeEEEeCcchh
Q 028547 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMD--EFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~--~~~~~~fD~v~~~~~l~ 124 (207)
.+||||||.|.++..++...+ ..++|+|+....+..+.++.. ...|+.++++|+.... -++++++|.|+...+=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 899999999999999999865 599999999999988887765 4479999999999842 14568999999754333
Q ss_pred hhc-cCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SLL-CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~~-~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|.. .+....--...+++.++++|+|||.+.+.|
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 321 111112256789999999999999999988
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.7e-11 Score=99.52 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=83.2
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHc--c-------CCCCceEEEeccccccccCCCCee
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKY--S-------NRPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~--~-------~~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
+++++|||+|||+|..+..+++... .+++++|+++++++.++++. . +.++++++..|..+......++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4445999999999999999988754 69999999999999999842 1 126789999999986333457899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|+++..-... . ....-....+++.+.+.|+|||.+++..
T Consensus 376 vIi~D~~~~~~-~-~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSN-P-ALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCC-c-chhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99987432210 0 0012244678999999999999998865
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=86.19 Aligned_cols=103 Identities=17% Similarity=0.278 Sum_probs=81.0
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+.||.|+|-|+.+..++..-+.+|..+|..+..++.|++.+.. .....+.+..++++.| ...+||+|++--++.|+
T Consensus 57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P-~~~~YDlIW~QW~lghL 135 (218)
T PF05891_consen 57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTP-EEGKYDLIWIQWCLGHL 135 (218)
T ss_dssp SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-----TT-EEEEEEES-GGGS
T ss_pred ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccC-CCCcEeEEEehHhhccC
Confidence 49999999999999987666577999999999999999988765 2346788889998853 34799999999899988
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+.++...+|+++.+.|+|+|++++-.
T Consensus 136 -----TD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 136 -----TDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp ------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----CHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 78899999999999999999999854
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=92.01 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=61.3
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++++.... .+++|+++|+.+......+.||+|+++.+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 4999999999999999999864 9999999999999999887532 57999999998763223457999998755
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=94.01 Aligned_cols=128 Identities=14% Similarity=0.092 Sum_probs=97.2
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----CCceEEEecccccccc-
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVRQMDEF- 109 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d~~~~~~~- 109 (207)
.....+..... +++||++-|-||.++...+..|.++|++||+|..+++.+++++.-+ ..+.|+++|+.++...
T Consensus 207 ~~R~~l~~~~~--GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~ 284 (393)
T COG1092 207 DNRRALGELAA--GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKA 284 (393)
T ss_pred HHHHHHhhhcc--CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHH
Confidence 34455555544 4599999999999999999999889999999999999999998722 4578999999997322
Q ss_pred --CCCCeeEEEeCcchhhhccC--CCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccc
Q 028547 110 --QTGSFDSVVDKGTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYR 164 (207)
Q Consensus 110 --~~~~fD~v~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~ 164 (207)
...+||+|+..++-..-... -+-..+...++..+.++|+|||++++.+++.....
T Consensus 285 ~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~ 343 (393)
T COG1092 285 ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSS 343 (393)
T ss_pred HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCH
Confidence 34599999977543221000 01135788899999999999999999987665443
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.8e-10 Score=85.25 Aligned_cols=93 Identities=22% Similarity=0.351 Sum_probs=76.8
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~ 128 (207)
.++||||+|.|..+..++.. +.+|++.|+|+.|....+++ ..+++ +..+.. ..+.+||+|.|-++++.-
T Consensus 96 ~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k-----g~~vl--~~~~w~-~~~~~fDvIscLNvLDRc-- 164 (265)
T PF05219_consen 96 KSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK-----GFTVL--DIDDWQ-QTDFKFDVISCLNVLDRC-- 164 (265)
T ss_pred CceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC-----CCeEE--ehhhhh-ccCCceEEEeehhhhhcc--
Confidence 48999999999999999887 45999999999998888775 33333 434432 235689999999999975
Q ss_pred CCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 129 GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..+..+++.+++.|+|+|.++++.
T Consensus 165 -----~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 165 -----DRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred -----CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 889999999999999999999876
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-10 Score=82.98 Aligned_cols=119 Identities=16% Similarity=0.197 Sum_probs=89.8
Q ss_pred cCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC--CCCc-eEEEeccccc-cc
Q 028547 34 PSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--RPQL-KYIKMDVRQM-DE 108 (207)
Q Consensus 34 ~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~-~~~~~d~~~~-~~ 108 (207)
..+.++|+.+++....+|||||||||..+.++++..+ -...-.|.++..+......... .+|+ .-+..|+... ++
T Consensus 12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~ 91 (204)
T PF06080_consen 12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWP 91 (204)
T ss_pred hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCc
Confidence 3577888888887773499999999999999999865 3777889888776555543321 1232 2334566654 22
Q ss_pred c------CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 109 F------QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 109 ~------~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. ..++||.|++.+++|-. ++.....+++.+.++|++||.|++-.
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~lHI~-----p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINMLHIS-----PWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred cccccccCCCCcceeeehhHHHhc-----CHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 2 35689999999999976 78899999999999999999998854
|
The function of this family is unknown. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-09 Score=75.66 Aligned_cols=110 Identities=20% Similarity=0.324 Sum_probs=92.9
Q ss_pred hhCCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc----ccCCCCee
Q 028547 42 LYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EFQTGSFD 115 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~fD 115 (207)
...+..+..|||+|.|+|-++..+...|. ..++++|.+++......+.+. .+.++.+|+.++. ......||
T Consensus 43 ~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p---~~~ii~gda~~l~~~l~e~~gq~~D 119 (194)
T COG3963 43 VIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP---GVNIINGDAFDLRTTLGEHKGQFFD 119 (194)
T ss_pred ccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC---CccccccchhhHHHHHhhcCCCeee
Confidence 33445556999999999999999999985 699999999999999998874 4568889888763 35677899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
.|+|.-++-.+ +.+...++++.+...|.+||.++-.+|+
T Consensus 120 ~viS~lPll~~-----P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 120 SVISGLPLLNF-----PMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eEEeccccccC-----cHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 99998777666 6678899999999999999999999887
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.4e-10 Score=89.55 Aligned_cols=112 Identities=20% Similarity=0.273 Sum_probs=83.6
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccccCCCCeeEE
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
.+.+++||.+|+|.|..+.++++.. ..+++.+|+++..++.+++.+.. .++++++..|+.+......++||+|
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 3445699999999999999888864 46899999999999999998752 3689999999999744456789999
Q ss_pred EeCcchhhhccCCCChhhHHHHHH-HHHHhcCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLK-EVWRVLKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~-~~~~~L~pgG~~~~~~ 157 (207)
++.. .+....+....-....+++ .+.+.|+|||++++..
T Consensus 181 i~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 181 IGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9763 1211001111123567787 8899999999987653
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-10 Score=83.80 Aligned_cols=103 Identities=18% Similarity=0.324 Sum_probs=70.9
Q ss_pred CcEEEEcCCCc----hhhHHHHhc-----CC-CcEEEEeCCHHHHHHHHHHc-------------------c--C-C---
Q 028547 49 QRILIVGCGNS----AFSEGMVDD-----GY-EDVVNVDISSVVIEAMMKKY-------------------S--N-R--- 93 (207)
Q Consensus 49 ~~vLdiG~G~G----~~~~~l~~~-----~~-~~v~~~D~s~~~i~~~~~~~-------------------~--~-~--- 93 (207)
-+|+-.||++| .+++.+.+. +. -+++|.|+++.+++.|++-. . + .
T Consensus 33 lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v 112 (196)
T PF01739_consen 33 LRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRV 112 (196)
T ss_dssp EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE
T ss_pred eEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeE
Confidence 49999999999 344444441 11 29999999999999987521 0 0 0
Q ss_pred -----CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 94 -----PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 94 -----~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..+.|.+.|+.+. +.+.+.||+|+|.+++-++ +.+....+++.+++.|+|||.|++-.
T Consensus 113 ~~~lr~~V~F~~~NL~~~-~~~~~~fD~I~CRNVlIYF-----~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 113 KPELRKMVRFRRHNLLDP-DPPFGRFDLIFCRNVLIYF-----DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp -HHHHTTEEEEE--TT-S-------EEEEEE-SSGGGS------HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred ChHHcCceEEEecccCCC-CcccCCccEEEecCEEEEe-----CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 2689999999993 3467899999999999998 77889999999999999999999854
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.9e-10 Score=85.56 Aligned_cols=108 Identities=20% Similarity=0.215 Sum_probs=85.4
Q ss_pred cEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccc--cCCCCeeEEEeCcchh
Q 028547 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~--~~~~~fD~v~~~~~l~ 124 (207)
.+||||||.|.++..+|+..+ ..++|+|+....+..+.+++... .|+++++.|+..... .++++.|-|+.+.+=-
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDP 130 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDP 130 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCC
Confidence 899999999999999999876 59999999999999988877643 499999999998632 3455999998764333
Q ss_pred hhc-cCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SLL-CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~~-~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|.. -+....--...+++.+.++|+|||.+.+.|
T Consensus 131 WpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 131 WPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 321 111222356889999999999999999988
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-10 Score=89.94 Aligned_cols=102 Identities=24% Similarity=0.251 Sum_probs=77.5
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
++.|||+|||+|.++.+.++.|..+|+++|.|..+ +.+.+.+..+ ..+.++++.+.+. .+|.+++|+|++--+=+
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhhhH
Confidence 35999999999999999999998899999988755 7777765532 3488899988887 46778999999864444
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
+++ -+.-+...+-.--++|+|||.++=
T Consensus 139 ~Ll----~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 139 FLL----YESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHH----HhhhhhhhhhhhhhccCCCceEcc
Confidence 431 123445555555789999999764
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-10 Score=87.42 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=79.6
Q ss_pred CcEEEEcCCCc----hhhHHHHhcC-----CCcEEEEeCCHHHHHHHHHHc------------------cC---------
Q 028547 49 QRILIVGCGNS----AFSEGMVDDG-----YEDVVNVDISSVVIEAMMKKY------------------SN--------- 92 (207)
Q Consensus 49 ~~vLdiG~G~G----~~~~~l~~~~-----~~~v~~~D~s~~~i~~~~~~~------------------~~--------- 92 (207)
-+|+..||.+| .++..+.+.. .-+|+|.|+++.+++.|++-. ..
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 49999999999 3444444421 127999999999999987631 00
Q ss_pred ------CCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 93 ------RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 93 ------~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
...+.|.+.|+.+....+.+.||+|+|.+++.++ +.+....+++++++.|+|||.|++-.
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-----~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-----DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-----CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0357899999988521236789999999999888 66889999999999999999887644
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.9e-11 Score=87.50 Aligned_cols=107 Identities=19% Similarity=0.283 Sum_probs=89.0
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
..+ .++||||+-|+....+...+..+++-+|.|-.|++.++..-...-.......|=..+ ++.+.++|+|+++..+||
T Consensus 72 ~fp-~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~L-df~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 72 SFP-TAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFL-DFKENSVDLIISSLSLHW 149 (325)
T ss_pred hCc-ceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcc-cccccchhhhhhhhhhhh
Confidence 344 899999999999999999988899999999999999876422112234455665555 588999999999999999
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
. .+++..+.++...|||+|.|+..-+++.
T Consensus 150 ~-------NdLPg~m~~ck~~lKPDg~Fiasmlggd 178 (325)
T KOG2940|consen 150 T-------NDLPGSMIQCKLALKPDGLFIASMLGGD 178 (325)
T ss_pred h-------ccCchHHHHHHHhcCCCccchhHHhccc
Confidence 9 8999999999999999999998766654
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.13 E-value=7e-10 Score=80.68 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccC-----CCCceEEEeccccc---cccCCCCeeEEE
Q 028547 48 HQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSN-----RPQLKYIKMDVRQM---DEFQTGSFDSVV 118 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~-----~~~~~~~~~d~~~~---~~~~~~~fD~v~ 118 (207)
+++|||+|||+|..+..++.. +..+|+..|..+ .++.++.++.. ..++.+...|+.+. ......+||+|+
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Il 124 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVIL 124 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEE
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEE
Confidence 359999999999999999998 556999999998 88888887653 25678888877652 112456899999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+..+++.- +....+++.+.++|+++|.+++...
T Consensus 125 asDv~Y~~-------~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 125 ASDVLYDE-------ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EES--S-G-------GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EecccchH-------HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99998865 8899999999999999999666653
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=82.18 Aligned_cols=109 Identities=19% Similarity=0.177 Sum_probs=81.8
Q ss_pred cEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccc----ccccCCCCeeEEEeCc
Q 028547 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQ----MDEFQTGSFDSVVDKG 121 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~----~~~~~~~~fD~v~~~~ 121 (207)
.+||+|||+|..+..++..-. ..++++|.|+.++..+.+|.... ..+.+++.+... ..+...+++|+++++.
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCC
Confidence 799999999999999988643 69999999999999999987632 456666443333 2234568999999997
Q ss_pred chhh-------------------hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDS-------------------LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~-------------------~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++-. +--+..+.+....++.-+.|+|+|||.+.+..-
T Consensus 231 PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 231 PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 6521 112223456778888888999999999998764
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-10 Score=82.16 Aligned_cols=102 Identities=20% Similarity=0.295 Sum_probs=65.7
Q ss_pred HHHHHHhhCCCCC-CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCe
Q 028547 36 LAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 36 ~~~~l~~~~~~~~-~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (207)
+..+++.+...+. ..|.|+|||.+.++..+. .+. +|..+|+.. .+-.+..+|+.+. |+++++.
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva-------------~n~~Vtacdia~v-PL~~~sv 123 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA-------------PNPRVTACDIANV-PLEDESV 123 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S----EEEEESS--------------SSTTEEES-TTS--S--TT-E
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC-------------CCCCEEEecCccC-cCCCCce
Confidence 4445554443332 499999999999986654 334 899999865 2456888999888 8899999
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|+++....|.. .++..+++++.|+|||||.+.|.....+
T Consensus 124 Dv~VfcLSLMG--------Tn~~~fi~EA~RvLK~~G~L~IAEV~SR 162 (219)
T PF05148_consen 124 DVAVFCLSLMG--------TNWPDFIREANRVLKPGGILKIAEVKSR 162 (219)
T ss_dssp EEEEEES---S--------S-HHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred eEEEEEhhhhC--------CCcHHHHHHHHheeccCcEEEEEEeccc
Confidence 99998766654 6899999999999999999999885444
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-10 Score=84.57 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=79.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccc---cCCCCeeEEEeCc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDE---FQTGSFDSVVDKG 121 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~---~~~~~fD~v~~~~ 121 (207)
+.+|||+-||+|.++.+.+.+|..+++.||.++.++...++++... ..+.+++.|+..... .....||+|++.+
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 4499999999999999999999999999999999999999987632 247888888776421 1468999999998
Q ss_pred chhhhccCCCChhhHHHHHHHHH--HhcCCCcEEEEEEeCC
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVW--RVLKDKGVYILVTYGA 160 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~~~~~~~~~ 160 (207)
++..- .....+++.+. .+|+++|++++.....
T Consensus 123 PY~~~-------~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 123 PYAKG-------LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp STTSC-------HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred Ccccc-------hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 87742 22477888887 7999999998877444
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7e-10 Score=83.40 Aligned_cols=114 Identities=19% Similarity=0.174 Sum_probs=90.0
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQ 110 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~ 110 (207)
...++....-.++.+|+|.|.|+|.++..++.. +. .+|+.+|+-++..+.|++|+... .++.+...|+.+.. .+
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~-~~ 161 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI-DE 161 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc-cc
Confidence 455555554555669999999999999999963 33 59999999999999999998753 34889999999973 33
Q ss_pred CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
+.||.|+.. + .++-..++++.+.|+|||.+.+-.......
T Consensus 162 -~~vDav~LD-----m-------p~PW~~le~~~~~Lkpgg~~~~y~P~veQv 201 (256)
T COG2519 162 -EDVDAVFLD-----L-------PDPWNVLEHVSDALKPGGVVVVYSPTVEQV 201 (256)
T ss_pred -cccCEEEEc-----C-------CChHHHHHHHHHHhCCCcEEEEEcCCHHHH
Confidence 499999954 2 577889999999999999998766544433
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.2e-10 Score=81.41 Aligned_cols=102 Identities=9% Similarity=0.036 Sum_probs=76.6
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccc-c-C-CCCeeEEEeCcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDE-F-Q-TGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~-~-~-~~~fD~v~~~~~ 122 (207)
.+|||++||+|.++..++.+|...++++|.++.+++.+++++... .++.+++.|+.+... . . ...||+|+...+
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPP 130 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPP 130 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcC
Confidence 499999999999999999998779999999999999999887632 367899999966421 1 1 224799998776
Q ss_pred hhhhccCCCChhhHHHHHHHHH--HhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVW--RVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~~~~~~~ 158 (207)
+.. .....+++.+. .+|+++|++++...
T Consensus 131 y~~--------~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 131 FFN--------GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CCC--------CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 652 23445555553 46888888777653
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.9e-10 Score=83.05 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=82.5
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCC---CCceEEE-eccccccc-cCCCCeeEEEe
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR---PQLKYIK-MDVRQMDE-FQTGSFDSVVD 119 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~-~d~~~~~~-~~~~~fD~v~~ 119 (207)
++++|||||.+.|.-+.+|+..-. .+++.+|.+++..+.|++++... ..+..+. +|..+... ...++||+||.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 446999999999999999988643 58999999999999999998743 3477777 57777532 35689999995
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
. + ...+.+.+++.+.++|+|||++++-..
T Consensus 139 D----a------dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 139 D----A------DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred e----C------ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 4 3 235778999999999999999998653
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-09 Score=84.01 Aligned_cols=85 Identities=16% Similarity=0.251 Sum_probs=66.4
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeE
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
..+++.....++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. .++.++++|+.+. +++.-.++.
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-~~v~~i~~D~~~~-~~~~~~~~~ 108 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-DNLTIIEGDALKV-DLSELQPLK 108 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-CceEEEEChhhcC-CHHHcCcce
Confidence 3444444334445999999999999999999876 999999999999999988754 6899999999987 343222588
Q ss_pred EEeCcchh
Q 028547 117 VVDKGTLD 124 (207)
Q Consensus 117 v~~~~~l~ 124 (207)
|+++.++.
T Consensus 109 vv~NlPY~ 116 (272)
T PRK00274 109 VVANLPYN 116 (272)
T ss_pred EEEeCCcc
Confidence 88886644
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=84.32 Aligned_cols=100 Identities=12% Similarity=0.066 Sum_probs=80.4
Q ss_pred CCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccccc-----CCCCeeEE
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEF-----QTGSFDSV 117 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~-----~~~~fD~v 117 (207)
+++|||+|+++|..+.+++..- ...++++|.+++..+.|++++... .+++++.+|+.+..+. ..++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 4599999999999999998742 237999999999999999988643 4799999999875321 13689999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|.... ......+++.+.+.|+|||++++-.
T Consensus 199 FIDa~----------K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 199 FVDAD----------KRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EECCC----------HHHHHHHHHHHHHhcCCCcEEEEec
Confidence 96532 3567888999999999999998854
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.6e-10 Score=85.34 Aligned_cols=84 Identities=13% Similarity=0.264 Sum_probs=67.2
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeE
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
..+++.....++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++....++.++++|+.+. +++ .||.
T Consensus 19 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~-~~~--~~d~ 94 (258)
T PRK14896 19 DRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKV-DLP--EFNK 94 (258)
T ss_pred HHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccC-Cch--hceE
Confidence 3444444333445999999999999999999854 99999999999999998876556899999999987 333 5899
Q ss_pred EEeCcchh
Q 028547 117 VVDKGTLD 124 (207)
Q Consensus 117 v~~~~~l~ 124 (207)
|+++.+++
T Consensus 95 Vv~NlPy~ 102 (258)
T PRK14896 95 VVSNLPYQ 102 (258)
T ss_pred EEEcCCcc
Confidence 99987765
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.9e-10 Score=82.94 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=79.6
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccc-c----CCCCeeE
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDE-F----QTGSFDS 116 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~-~----~~~~fD~ 116 (207)
++++||||||++|.-+.++++.-. ++++.+|++++..+.|++.+... .+++++.+|+.+..+ + ..++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 334999999999999999998532 59999999999999999987632 479999999987522 1 1358999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
||.... .......++.+.++|+|||++++-.
T Consensus 125 VFiDa~----------K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDAD----------KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEST----------GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEccc----------ccchhhHHHHHhhhccCCeEEEEcc
Confidence 996532 3566788999999999999999865
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=88.72 Aligned_cols=115 Identities=10% Similarity=0.122 Sum_probs=80.5
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+|||+|||+|.++..++..+ .+|+++|+++.+++.++++.... .++.|.++|+.+.......+||+|+++.+-..+
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~ 313 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGI 313 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCC
Confidence 499999999999999999876 49999999999999999987633 478999999987532122469999988664322
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccccCCCCceE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNI 176 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (207)
...+++.+. .++|++++|++- .+....+-+....+|.+
T Consensus 314 ---------~~~~l~~l~-~~~p~~ivyvsc--~p~TlaRDl~~L~gy~l 351 (374)
T TIGR02085 314 ---------GKELCDYLS-QMAPKFILYSSC--NAQTMAKDIAELSGYQI 351 (374)
T ss_pred ---------cHHHHHHHH-hcCCCeEEEEEe--CHHHHHHHHHHhcCceE
Confidence 234445554 478988777653 33333333322244555
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=85.02 Aligned_cols=111 Identities=15% Similarity=0.206 Sum_probs=80.3
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCe
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~f 114 (207)
.++.+...-.++.|||+|||+|.++.+.++.|.++|++++.|+ |.+.|++....+ .++.++.+-+.+.. .+++.
T Consensus 168 Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdie--LPEk~ 244 (517)
T KOG1500|consen 168 AILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIE--LPEKV 244 (517)
T ss_pred HHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccccc--Cchhc
Confidence 3444444444569999999999999999999989999999766 778888776643 57889999998883 45789
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
|+|++-.+ .+++. +++-++..+ ...++|+|.|.++-.
T Consensus 245 DviISEPM-G~mL~---NERMLEsYl-~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 245 DVIISEPM-GYMLV---NERMLESYL-HARKWLKPNGKMFPT 281 (517)
T ss_pred cEEEeccc-hhhhh---hHHHHHHHH-HHHhhcCCCCcccCc
Confidence 99998643 33311 223333333 345999999998753
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.9e-10 Score=85.92 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=90.3
Q ss_pred ecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-C---CCCceEEEecccc
Q 028547 30 YQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-N---RPQLKYIKMDVRQ 105 (207)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-~---~~~~~~~~~d~~~ 105 (207)
+...+..+..+..+.. +++|||+-|-+|.++...+..|..+|+.||.|..+++.+++++. + ...++|++.|+.+
T Consensus 108 FlDqR~nR~~v~~~~~--gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~ 185 (286)
T PF10672_consen 108 FLDQRENRKWVRKYAK--GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFK 185 (286)
T ss_dssp -GGGHHHHHHHHHHCT--TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHH
T ss_pred cHHHHhhHHHHHHHcC--CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH
Confidence 3333445556655532 34999999999999999999887799999999999999999876 2 2478999999988
Q ss_pred ccc--cCCCCeeEEEeCcchhhhccCC-CChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccc
Q 028547 106 MDE--FQTGSFDSVVDKGTLDSLLCGS-NSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYR 164 (207)
Q Consensus 106 ~~~--~~~~~fD~v~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~ 164 (207)
... ...++||+|++..+-.. .+. .-..+...++..+.++|+|||.+++.+++.....
T Consensus 186 ~l~~~~~~~~fD~IIlDPPsF~--k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~ 245 (286)
T PF10672_consen 186 FLKRLKKGGRFDLIILDPPSFA--KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISP 245 (286)
T ss_dssp HHHHHHHTT-EEEEEE--SSEE--SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-H
T ss_pred HHHHHhcCCCCCEEEECCCCCC--CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCH
Confidence 522 13569999998765332 111 1124677889999999999999988887665443
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-09 Score=81.74 Aligned_cols=85 Identities=19% Similarity=0.273 Sum_probs=66.1
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCee
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
+..+++.....++.+|||+|||+|.++..+++.+. .++++|+++.+++.+++++....++.++++|+.+. +++ .+|
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~-~~~--~~d 93 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKV-DLP--DFP 93 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcC-Chh--HcC
Confidence 34455544334445999999999999999999875 89999999999999998875446889999999987 333 466
Q ss_pred ---EEEeCcchh
Q 028547 116 ---SVVDKGTLD 124 (207)
Q Consensus 116 ---~v~~~~~l~ 124 (207)
.|+++.+++
T Consensus 94 ~~~~vvsNlPy~ 105 (253)
T TIGR00755 94 KQLKVVSNLPYN 105 (253)
T ss_pred CcceEEEcCChh
Confidence 788776544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-09 Score=83.30 Aligned_cols=110 Identities=21% Similarity=0.310 Sum_probs=87.5
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccccCCCCeeE
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
.++.+++||-||.|.|..+.++.+... .+++.||++++.++.+++.++. .+++.++..|..++......+||+
T Consensus 73 ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 73 AHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred hCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 344556999999999999999999874 7999999999999999998762 267899999999974333448999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
|++...=. . ++...-....+++.+++.|+++|+++..
T Consensus 153 Ii~D~tdp-~--gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDP-V--GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCC-C--CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 99763211 1 2223335689999999999999999987
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=90.13 Aligned_cols=97 Identities=11% Similarity=0.203 Sum_probs=72.9
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccc---cCCCCeeEEEeCcch
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~---~~~~~fD~v~~~~~l 123 (207)
.+|||+|||+|.++..+++... +|+++|+++.+++.+++++.. ..+++|+.+|+.+..+ ....+||+|++..+-
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr 372 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR 372 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC
Confidence 4999999999999999998754 999999999999999998763 2589999999976421 234579999976542
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.. -...+++.+.+ ++|++++|++
T Consensus 373 ~G---------~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 373 KG---------CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred CC---------CCHHHHHHHHh-cCCCEEEEEc
Confidence 21 12445555544 7888876653
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.8e-09 Score=71.72 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=79.2
Q ss_pred HHHHHHhhCCC-CCCcEEEEcCCCch-hhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCC
Q 028547 36 LAPLIKLYVPS-HHQRILIVGCGNSA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 36 ~~~~l~~~~~~-~~~~vLdiG~G~G~-~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (207)
+.+.+....+. ++.+|+|+|||+|. ++..+++.|+ +|+++|+++.+++.++++ .+.+++.|+.+...-.-+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~~y~~ 77 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLEIYKN 77 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHHHHhc
Confidence 34444443332 33589999999995 8888998888 999999999999999876 4689999999975334578
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
+|+|.+..+ ..+....+.++++.+. .-+++..++.+.
T Consensus 78 a~liysirp----------p~el~~~~~~la~~~~--~~~~i~~l~~e~ 114 (134)
T PRK04148 78 AKLIYSIRP----------PRDLQPFILELAKKIN--VPLIIKPLSGEE 114 (134)
T ss_pred CCEEEEeCC----------CHHHHHHHHHHHHHcC--CCEEEEcCCCCC
Confidence 999997533 3455666666666554 567776766554
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.7e-09 Score=79.79 Aligned_cols=99 Identities=14% Similarity=0.234 Sum_probs=76.4
Q ss_pred hhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccccCCCCee
Q 028547 42 LYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
...++++++||-+|.|.|..+.++++... +|+.||++++.++.+++.++. .++++++.. +.+ ...++||
T Consensus 67 l~~h~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~---~~~~~fD 141 (262)
T PRK00536 67 GCTKKELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD---LDIKKYD 141 (262)
T ss_pred HhhCCCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh---ccCCcCC
Confidence 44556667999999999999999999854 999999999999999996652 256666541 111 1246899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|+.... ....+++.+.+.|+|||+++...
T Consensus 142 VIIvDs~------------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 142 LIICLQE------------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEEEcCC------------CChHHHHHHHHhcCCCcEEEECC
Confidence 9997643 22677899999999999999854
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-09 Score=79.95 Aligned_cols=87 Identities=23% Similarity=0.332 Sum_probs=71.1
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~ 128 (207)
..|.|+|||.+.++. .. ...|+.+|+.+ .+-+++.+|+.+. |..+++.|+++....+..
T Consensus 182 ~vIaD~GCGEakiA~---~~-~~kV~SfDL~a-------------~~~~V~~cDm~~v-Pl~d~svDvaV~CLSLMg--- 240 (325)
T KOG3045|consen 182 IVIADFGCGEAKIAS---SE-RHKVHSFDLVA-------------VNERVIACDMRNV-PLEDESVDVAVFCLSLMG--- 240 (325)
T ss_pred eEEEecccchhhhhh---cc-ccceeeeeeec-------------CCCceeeccccCC-cCccCcccEEEeeHhhhc---
Confidence 399999999988765 22 24899999855 3678999999997 889999999987655443
Q ss_pred CCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.++..++++++|+|++||.++|......
T Consensus 241 -----tn~~df~kEa~RiLk~gG~l~IAEv~SR 268 (325)
T KOG3045|consen 241 -----TNLADFIKEANRILKPGGLLYIAEVKSR 268 (325)
T ss_pred -----ccHHHHHHHHHHHhccCceEEEEehhhh
Confidence 6889999999999999999999875433
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.4e-09 Score=80.99 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=89.3
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEe-ccccccccCCCCeeEEEeCcc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKM-DVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~-d~~~~~~~~~~~fD~v~~~~~ 122 (207)
+.+..|||.-||||.++.++.-.|. .++|+|++..+++-++.|+... ....+... |+.+. |+++.++|.|++..+
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l-pl~~~~vdaIatDPP 273 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL-PLRDNSVDAIATDPP 273 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC-CCCCCccceEEecCC
Confidence 3334999999999999999999988 9999999999999999998743 45555665 99998 688778999999877
Q ss_pred hhhhccCCCC--hhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNS--RQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~--~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+.--...... .+-...+++.+.++|++||.+++...
T Consensus 274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 274 YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 6543211111 24578899999999999999998775
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-09 Score=82.99 Aligned_cols=85 Identities=19% Similarity=0.364 Sum_probs=67.2
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccccCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~ 112 (207)
+..+++.....++.+|||||||+|.++..+++.+. +++++|+++.+++.+++++.. ..+++++++|+.+.. + .
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-~--~ 100 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-F--P 100 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-c--c
Confidence 34455544444445999999999999999998865 899999999999999988753 257999999998863 3 3
Q ss_pred CeeEEEeCcchh
Q 028547 113 SFDSVVDKGTLD 124 (207)
Q Consensus 113 ~fD~v~~~~~l~ 124 (207)
.||.|+++.+++
T Consensus 101 ~~d~VvaNlPY~ 112 (294)
T PTZ00338 101 YFDVCVANVPYQ 112 (294)
T ss_pred ccCEEEecCCcc
Confidence 689999986665
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.9e-08 Score=71.29 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=88.0
Q ss_pred CccCHHHHHHhhCCC---CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccc
Q 028547 32 KYPSLAPLIKLYVPS---HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQ 105 (207)
Q Consensus 32 ~~~~~~~~l~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~ 105 (207)
....+++.+-+.+.. .+.++||+-+|+|.++.+.+.+|...++.+|.+..++...+++.... .+.+++..|+..
T Consensus 25 T~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~ 104 (187)
T COG0742 25 TTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR 104 (187)
T ss_pred CchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH
Confidence 334555555555543 23599999999999999999999889999999999999999987632 578888888885
Q ss_pred ccccCCC--CeeEEEeCcchhhhccCCCChhhHHHHHHH--HHHhcCCCcEEEEEEe
Q 028547 106 MDEFQTG--SFDSVVDKGTLDSLLCGSNSRQNATQMLKE--VWRVLKDKGVYILVTY 158 (207)
Q Consensus 106 ~~~~~~~--~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~--~~~~L~pgG~~~~~~~ 158 (207)
..+.... +||+|+...+++. +.-+....+.. -..+|+|+|.+++..-
T Consensus 105 ~L~~~~~~~~FDlVflDPPy~~------~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 105 ALKQLGTREPFDLVFLDPPYAK------GLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHhcCCCCcccEEEeCCCCcc------chhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 4222223 4999999988773 11222333333 4578999999998763
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-09 Score=87.64 Aligned_cols=100 Identities=22% Similarity=0.293 Sum_probs=71.7
Q ss_pred CcEEEEcCCCchhhHHHHhcC-----CCcEEEEeCCHHHHHHHHHHcc--CC-CCceEEEeccccccccCCCCeeEEEeC
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-----YEDVVNVDISSVVIEAMMKKYS--NR-PQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-----~~~v~~~D~s~~~i~~~~~~~~--~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
+.|+|+|||+|.++...++.+ ..+|+++|.++.++...+++.. .. ..++++++|+.+.. ...++|+|++-
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~--lpekvDIIVSE 265 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE--LPEKVDIIVSE 265 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC--HSS-EEEEEE-
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC--CCCceeEEEEe
Confidence 489999999999998877764 3599999999998887765522 22 57999999999984 45699999985
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
.+..++. .+-....+....+.|+|||+++=
T Consensus 266 -lLGsfg~----nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 266 -LLGSFGD----NELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp ---BTTBT----TTSHHHHHHHGGGGEEEEEEEES
T ss_pred -ccCCccc----cccCHHHHHHHHhhcCCCCEEeC
Confidence 2333322 23555678888999999998763
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=78.86 Aligned_cols=104 Identities=15% Similarity=0.259 Sum_probs=81.7
Q ss_pred CCcEEEEcCCCc----hhhHHHHhcC-----C-CcEEEEeCCHHHHHHHHHHcc-------------------CC-----
Q 028547 48 HQRILIVGCGNS----AFSEGMVDDG-----Y-EDVVNVDISSVVIEAMMKKYS-------------------NR----- 93 (207)
Q Consensus 48 ~~~vLdiG~G~G----~~~~~l~~~~-----~-~~v~~~D~s~~~i~~~~~~~~-------------------~~----- 93 (207)
.-+|+-.||++| .++..+.+.+ + -+|++.|++..+++.|+.-.- ..
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 349999999999 3444444432 2 389999999999999874110 00
Q ss_pred -------CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 94 -------PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 94 -------~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..|.|...|+....+ ..+.||+|+|.+++-++ +......+++..+..|+|||.|++-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYF-----d~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYF-----DEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEee-----CHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 257889999988743 56789999999999998 77899999999999999999998844
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=77.33 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=81.5
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQ 110 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~ 110 (207)
+..++..+.-.++.+|||.|.|+|.++..++.. +. .+|+.+|+.++..+.|++++... .++.+.+.|+.+. .+.
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~-g~~ 107 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEE-GFD 107 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG---S
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecc-ccc
Confidence 455555555566669999999999999999874 33 59999999999999999998743 5799999999864 232
Q ss_pred ---CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhc-CCCcEEEEEEeCCc
Q 028547 111 ---TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVL-KDKGVYILVTYGAP 161 (207)
Q Consensus 111 ---~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~~~~~~~~~~ 161 (207)
...+|.|+... .++-..+..+.+.| ++||.+.+-..+-.
T Consensus 108 ~~~~~~~DavfLDl------------p~Pw~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 108 EELESDFDAVFLDL------------PDPWEAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp TT-TTSEEEEEEES------------SSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred ccccCcccEEEEeC------------CCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence 36899999653 34455788889999 89999887654433
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=78.31 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=79.4
Q ss_pred CCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccccc------CCCCeeE
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEF------QTGSFDS 116 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~------~~~~fD~ 116 (207)
+++|||||+++|.-+.+++..- -.+++++|.+++..+.|++++... .+++++.+++.+..+. ..++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 4599999999999999888752 248999999999999999987633 5799999998885321 1368999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
||...- .......++.+.+.|+|||++++-.
T Consensus 160 iFiDad----------K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 160 IFVDAD----------KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEecCC----------HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 996532 3566788888999999999988743
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.3e-09 Score=81.30 Aligned_cols=112 Identities=21% Similarity=0.325 Sum_probs=83.2
Q ss_pred hCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccccCCC-Ce
Q 028547 43 YVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTG-SF 114 (207)
Q Consensus 43 ~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~-~f 114 (207)
...+++++||-||.|.|..+.++.+.. ..+++.+|+++..++.+++.++. .++++++..|.........+ +|
T Consensus 72 ~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 72 LLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp HHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-E
T ss_pred hcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcc
Confidence 334455699999999999999999875 36999999999999999987652 36899999999986433445 89
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+|+....- .. +....-....+++.+.+.|+|||++++..
T Consensus 152 DvIi~D~~d-p~--~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 152 DVIIVDLTD-PD--GPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEEESSS-TT--SCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEEeCCC-CC--CCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 999975321 11 11111356889999999999999999865
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.6e-09 Score=76.76 Aligned_cols=103 Identities=20% Similarity=0.287 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-Cc---------EEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-ED---------VVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~---------v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~ 112 (207)
+++..|||.-||+|.+.++.+..+. .. ++|+|+++++++.+++++... ..+.+.+.|+.++ ++..+
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l-~~~~~ 105 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL-PLPDG 105 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG-GGTTS
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc-ccccC
Confidence 3445999999999999998877643 13 789999999999999987632 3578999999998 46778
Q ss_pred CeeEEEeCcchhhhccC-CCChhhHHHHHHHHHHhcCC
Q 028547 113 SFDSVVDKGTLDSLLCG-SNSRQNATQMLKEVWRVLKD 149 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~-~~~~~~~~~~l~~~~~~L~p 149 (207)
++|.|+++.++..-... .....-...+++++.+++++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999887642110 01123456678888889998
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-09 Score=78.54 Aligned_cols=109 Identities=21% Similarity=0.275 Sum_probs=88.1
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----CCceEEEeccccc-cccCCCCeeEEEe
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVRQM-DEFQTGSFDSVVD 119 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d~~~~-~~~~~~~fD~v~~ 119 (207)
.+.+.+|||.+.|-|+.++..++.|...|+.+|.++..++.|+-|.=+. ..++++.+|+.+. ..+.+++||+|+-
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 3445599999999999999999999889999999999999988764321 4689999999985 4478899999997
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..+=..+ .++-....+.++++++|+|||.++--+
T Consensus 212 DPPRfS~----AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 212 DPPRFSL----AGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred CCCccch----hhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 6543332 235688999999999999999987543
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.8e-09 Score=80.17 Aligned_cols=147 Identities=20% Similarity=0.237 Sum_probs=90.8
Q ss_pred CCCChhchhhhhcccCCceeeecCcc-CHHHHHHhhCC--CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHH
Q 028547 9 AYGEPWYWDNRYAHESGPFDWYQKYP-SLAPLIKLYVP--SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA 85 (207)
Q Consensus 9 ~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~ 85 (207)
.|+.+.|.+.+|........-..-.. .+..+.+.+.. .++.++||+|||+-.+...-+...+.+++..|.++..++.
T Consensus 15 ~FdP~~Yl~~yY~~~~~~~~~~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~e 94 (256)
T PF01234_consen 15 EFDPRAYLDTYYSFPSGDDAEDEILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREE 94 (256)
T ss_dssp HB-HHHHHHHHHSTSSS-CHHHHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHH
T ss_pred cCCHHHHHHHhcCCCccCcccchhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHH
Confidence 46677788878865543321000000 01111112211 2224899999999766554454545799999999998887
Q ss_pred HHHHccCCC------------------------------C-ceEEEeccccccccCC-----CCeeEEEeCcchhhhccC
Q 028547 86 MMKKYSNRP------------------------------Q-LKYIKMDVRQMDEFQT-----GSFDSVVDKGTLDSLLCG 129 (207)
Q Consensus 86 ~~~~~~~~~------------------------------~-~~~~~~d~~~~~~~~~-----~~fD~v~~~~~l~~~~~~ 129 (207)
.++.+.+.. . -+++.+|+.+..|+.. ..||+|++..++...
T Consensus 95 l~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a--- 171 (256)
T PF01234_consen 95 LEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESA--- 171 (256)
T ss_dssp HHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH---
T ss_pred HHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHH---
Confidence 766443210 1 2477889998755543 359999999888866
Q ss_pred CCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 130 SNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 130 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
..+.+.....++++.++|||||.|++...
T Consensus 172 ~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 172 CKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp -SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 34567899999999999999999999764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-08 Score=75.66 Aligned_cols=104 Identities=16% Similarity=0.271 Sum_probs=66.2
Q ss_pred CHHHHHHhhCC-CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCce-EEEecccccc--cc-
Q 028547 35 SLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLK-YIKMDVRQMD--EF- 109 (207)
Q Consensus 35 ~~~~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~-~~~~d~~~~~--~~- 109 (207)
.+..++..+.. ..+++|||+|||+|.++..+++.|..+|+++|+++.++....+.- +++. +...|+.... .+
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~---~~v~~~~~~ni~~~~~~~~~ 138 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD---ERVKVLERTNIRYVTPADIF 138 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC---CCeeEeecCCcccCCHhHcC
Confidence 34555555432 244489999999999999999998779999999998777622221 1221 2233333221 01
Q ss_pred -CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 110 -QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 110 -~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.-..+|+++++. ...+..+.+.|++ |.+++..
T Consensus 139 ~d~~~~DvsfiS~---------------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 139 PDFATFDVSFISL---------------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CCceeeeEEEeeh---------------HhHHHHHHHHhCc-CeEEEEc
Confidence 223677777541 2258888999999 7766544
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-09 Score=73.28 Aligned_cols=79 Identities=19% Similarity=0.360 Sum_probs=66.3
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
-.+++++|+|||.|.++...+-.+...+.|+|+.+++++.+.++.... .++.++++|+.++. +..+.||.++.+.++.
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle-~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLE-LKGGIFDTAVINPPFG 125 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchh-ccCCeEeeEEecCCCC
Confidence 344699999999999996666666679999999999999999988755 57899999999984 5668999999998876
Q ss_pred h
Q 028547 125 S 125 (207)
Q Consensus 125 ~ 125 (207)
.
T Consensus 126 T 126 (185)
T KOG3420|consen 126 T 126 (185)
T ss_pred c
Confidence 4
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-08 Score=86.30 Aligned_cols=108 Identities=14% Similarity=0.114 Sum_probs=83.9
Q ss_pred cEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc--CCCCceEEEeccccc-cccCCCCeeEEEeCcchhh
Q 028547 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQM-DEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~-~~~~~~~fD~v~~~~~l~~ 125 (207)
.+||||||.|.++..++...+ ..++|+|+....+..+.++.. +..|+.+++.|+..+ ..++++++|.|+.+.+=-|
T Consensus 350 ~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPW 429 (506)
T PRK01544 350 VFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPW 429 (506)
T ss_pred eEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCC
Confidence 999999999999999999865 599999999988888777654 236888888887643 2367788999997654443
Q ss_pred hc-cCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 126 LL-CGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 126 ~~-~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.. .+....--...+++.++++|+|||.+.+.|
T Consensus 430 pKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 430 IKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 32 122233357889999999999999999988
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.1e-09 Score=76.11 Aligned_cols=101 Identities=23% Similarity=0.296 Sum_probs=70.7
Q ss_pred HHhhCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCee
Q 028547 40 IKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 40 l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD 115 (207)
+.....+.. +|+|+.||-|.++..+++.+ .+.|+++|++|.+++.++++...+ ..+..+++|..+.. +...||
T Consensus 95 i~~~v~~~e-~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~--~~~~~d 171 (200)
T PF02475_consen 95 IANLVKPGE-VVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL--PEGKFD 171 (200)
T ss_dssp HHTC--TT--EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EE
T ss_pred HHhcCCcce-EEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc--CccccC
Confidence 333444454 99999999999999999833 358999999999999999987622 45788999999984 378999
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
.|+++.+-.. ..++..+.+++++||++-
T Consensus 172 rvim~lp~~~-----------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 172 RVIMNLPESS-----------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEE--TSSG-----------GGGHHHHHHHEEEEEEEE
T ss_pred EEEECChHHH-----------HHHHHHHHHHhcCCcEEE
Confidence 9998755333 346777889999998763
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-08 Score=81.55 Aligned_cols=114 Identities=12% Similarity=0.158 Sum_probs=85.3
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
+++.+|||+++|+|.=+..++... ...+++.|+++.-++.+++++... .++.+...|...+.......||.|+...
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 444599999999999998888753 248999999999999998887743 5778888888876333346799999765
Q ss_pred chhhhccCCCC--------h-------hhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 122 TLDSLLCGSNS--------R-------QNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 122 ~l~~~~~~~~~--------~-------~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+.....--... . .....+|..+.+.|||||.++.+|++
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 55432211111 1 23578899999999999999999875
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.7e-08 Score=70.01 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=81.5
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC--CcEEEEeCCHHHHHHHHHHccCC------------CCceEE
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY--EDVVNVDISSVVIEAMMKKYSNR------------PQLKYI 99 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~--~~v~~~D~s~~~i~~~~~~~~~~------------~~~~~~ 99 (207)
.+.+.|+..+.+.. +.||+|+|+|+++.-++.. +. ....|+|.-++.++.+++++... .++.++
T Consensus 71 ~~le~L~~~L~pG~-s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661|consen 71 TALEYLDDHLQPGA-SFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHhhccCc-ceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence 34455554455555 9999999999999877753 22 24599999999999999876521 367899
Q ss_pred EeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 100 KMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 100 ~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+|..... -...+||.|.+.. ......+++.+.|++||.+++..
T Consensus 150 vGDgr~g~-~e~a~YDaIhvGA-------------aa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 150 VGDGRKGY-AEQAPYDAIHVGA-------------AASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eCCccccC-CccCCcceEEEcc-------------CccccHHHHHHhhccCCeEEEee
Confidence 99999974 3678999999763 33445677788999999998865
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.3e-08 Score=80.10 Aligned_cols=94 Identities=16% Similarity=0.300 Sum_probs=67.9
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccc-cC--------------C
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDE-FQ--------------T 111 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~-~~--------------~ 111 (207)
.+|||++||+|.++..+++. ..+|+++|+++.+++.++++.... .++.|+++|+.+..+ +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 37999999999999988876 459999999999999999987532 579999999987421 11 1
Q ss_pred CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
..||+|+...+-.. ....+++.+.+ |++++|+
T Consensus 287 ~~~D~v~lDPPR~G---------~~~~~l~~l~~---~~~ivyv 318 (362)
T PRK05031 287 YNFSTIFVDPPRAG---------LDDETLKLVQA---YERILYI 318 (362)
T ss_pred CCCCEEEECCCCCC---------CcHHHHHHHHc---cCCEEEE
Confidence 25899998765321 22444444444 5666554
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.3e-08 Score=74.84 Aligned_cols=88 Identities=18% Similarity=0.270 Sum_probs=71.8
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCC-C
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTG-S 113 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~ 113 (207)
.+..+++.....++..|||||+|.|.++..+++.+. .|+++|+++.++...++++....++.++.+|+.+.+ ++.- .
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d-~~~l~~ 95 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFD-FPSLAQ 95 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCc-chhhcC
Confidence 355666655444445999999999999999999977 899999999999999999875579999999999983 4432 6
Q ss_pred eeEEEeCcchh
Q 028547 114 FDSVVDKGTLD 124 (207)
Q Consensus 114 fD~v~~~~~l~ 124 (207)
++.|+++-+++
T Consensus 96 ~~~vVaNlPY~ 106 (259)
T COG0030 96 PYKVVANLPYN 106 (259)
T ss_pred CCEEEEcCCCc
Confidence 78999986654
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.2e-08 Score=78.43 Aligned_cols=97 Identities=9% Similarity=0.178 Sum_probs=79.5
Q ss_pred CcEEEEcCCCchhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.+|||+.||+|..++.++.. |..+|+++|+++.+++.+++++... .++.+.+.|+..........||+|+... +.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence 38999999999999999987 5579999999999999999988632 4678999999987433346799999754 22
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
....+++.+.+.++++|+++++
T Consensus 125 ----------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 125 ----------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred ----------CcHHHHHHHHHhcccCCEEEEE
Confidence 2346888899999999999986
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-08 Score=75.12 Aligned_cols=119 Identities=17% Similarity=0.250 Sum_probs=70.9
Q ss_pred HHHHHHhhC--CC-CCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc----
Q 028547 36 LAPLIKLYV--PS-HHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM---- 106 (207)
Q Consensus 36 ~~~~l~~~~--~~-~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~---- 106 (207)
+.++.+.+. .. ...+|||+||++|.++..+.+.+ ...|+|+|+.+. ...+++.++++|+.+.
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~ 79 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIK 79 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSH
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHH
Confidence 345555443 22 23599999999999999999997 359999999875 1113455555555542
Q ss_pred --cc-c--CCCCeeEEEeCcchhhhccCC-C---ChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 107 --DE-F--QTGSFDSVVDKGTLDSLLCGS-N---SRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 107 --~~-~--~~~~fD~v~~~~~l~~~~~~~-~---~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
.. . ..+.+|+|++......-.... + ...-....+.-+.+.|+|||.+++..+.....
T Consensus 80 ~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 80 DIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI 145 (181)
T ss_dssp HGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred hhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence 11 1 126899999987332210000 0 01334445555567899999999988776554
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.6e-08 Score=78.06 Aligned_cols=94 Identities=14% Similarity=0.204 Sum_probs=67.7
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEecccccccc----------C-----CC
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEF----------Q-----TG 112 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~----------~-----~~ 112 (207)
+|||++||+|.++..+++.. .+|+++|+++.+++.++++.... .+++|++.|+.+..+- . ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred cEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 79999999999999888774 49999999999999999987633 5789999999875321 0 12
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.||+|+...+-. -....+++.+.+ |++++|++
T Consensus 279 ~~d~v~lDPPR~---------G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 279 NCSTIFVDPPRA---------GLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred CCCEEEECCCCC---------CCcHHHHHHHHc---CCcEEEEE
Confidence 379999765521 112344444443 66666653
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.3e-08 Score=79.20 Aligned_cols=96 Identities=18% Similarity=0.142 Sum_probs=75.6
Q ss_pred CcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+|||++||+|..+..++.. +..+|+++|+++.+++.+++++.. ..++.+.+.|+...... .+.||+|++... .
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-~~~fD~V~lDP~-G- 135 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-ERKFDVVDIDPF-G- 135 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-cCCCCEEEECCC-C-
Confidence 38999999999999999775 335899999999999999998763 24567899999775311 467999997642 2
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
....+++.+.+.+++||+++++
T Consensus 136 ---------s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 136 ---------SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---------CcHHHHHHHHHHhcCCCEEEEE
Confidence 2256777777888999999997
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-07 Score=72.34 Aligned_cols=114 Identities=21% Similarity=0.265 Sum_probs=82.6
Q ss_pred HHHHHHhhCCC-----CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-------------------
Q 028547 36 LAPLIKLYVPS-----HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS------------------- 91 (207)
Q Consensus 36 ~~~~l~~~~~~-----~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~------------------- 91 (207)
+...|....+. ...+||-.|||.|+++.+++..|+ .+.|.|.|--|+-...-.+.
T Consensus 40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn 118 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSN 118 (270)
T ss_pred HHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccC
Confidence 44455554441 223999999999999999999999 99999999987554332100
Q ss_pred -----------------------CCCCceEEEeccccccccC--CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHh
Q 028547 92 -----------------------NRPQLKYIKMDVRQMDEFQ--TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRV 146 (207)
Q Consensus 92 -----------------------~~~~~~~~~~d~~~~~~~~--~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 146 (207)
...+.....+|+.+.-+-. .++||+|+....++.. .+.-..++.|.++
T Consensus 119 ~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA-------~Ni~~Yi~tI~~l 191 (270)
T PF07942_consen 119 QKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA-------ENIIEYIETIEHL 191 (270)
T ss_pred CCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech-------HHHHHHHHHHHHH
Confidence 0014566667777762112 3699999988777765 8999999999999
Q ss_pred cCCCcEEEEEE
Q 028547 147 LKDKGVYILVT 157 (207)
Q Consensus 147 L~pgG~~~~~~ 157 (207)
|||||.++=..
T Consensus 192 LkpgG~WIN~G 202 (270)
T PF07942_consen 192 LKPGGYWINFG 202 (270)
T ss_pred hccCCEEEecC
Confidence 99999877543
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.4e-08 Score=77.53 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=56.4
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC----CCceEEE-eccccc-cc--cCCCCeeEEEe
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR----PQLKYIK-MDVRQM-DE--FQTGSFDSVVD 119 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~-~d~~~~-~~--~~~~~fD~v~~ 119 (207)
.++||||||+|.+...++...+ .+++++|+++.+++.|++++... .++.+.. .+.... .. .+.+.||+|+|
T Consensus 116 ~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivc 195 (321)
T PRK11727 116 VRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLC 195 (321)
T ss_pred ceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEe
Confidence 4999999999987777766522 38999999999999999988743 2455543 233222 11 24578999999
Q ss_pred Ccchhh
Q 028547 120 KGTLDS 125 (207)
Q Consensus 120 ~~~l~~ 125 (207)
+.+++.
T Consensus 196 NPPf~~ 201 (321)
T PRK11727 196 NPPFHA 201 (321)
T ss_pred CCCCcC
Confidence 998874
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.7e-08 Score=72.43 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=68.6
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~ 112 (207)
+.++++....+++..|||+|.|||.++..+.+.+. +|+++|+++.++...++++.+. ...+++.+|+...+ .-
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d---~P 122 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD---LP 122 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC---Cc
Confidence 44455544445555999999999999999999977 9999999999999999998754 46889999999873 23
Q ss_pred CeeEEEeCcchh
Q 028547 113 SFDSVVDKGTLD 124 (207)
Q Consensus 113 ~fD~v~~~~~l~ 124 (207)
.||.|+++-++.
T Consensus 123 ~fd~cVsNlPyq 134 (315)
T KOG0820|consen 123 RFDGCVSNLPYQ 134 (315)
T ss_pred ccceeeccCCcc
Confidence 689999975544
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.3e-07 Score=70.49 Aligned_cols=105 Identities=14% Similarity=0.191 Sum_probs=83.4
Q ss_pred CcEEEEcCCCchhhHHHHhcCC---CcEEEEeCCHHHHHHHHHHccC--CCCc-eEEEeccccccccC--CCCeeEEEeC
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY---EDVVNVDISSVVIEAMMKKYSN--RPQL-KYIKMDVRQMDEFQ--TGSFDSVVDK 120 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~---~~v~~~D~s~~~i~~~~~~~~~--~~~~-~~~~~d~~~~~~~~--~~~fD~v~~~ 120 (207)
-+||||.||.|++......... .++...|+++..++..++.... ..++ +|.+.|+.+...+. .-..++++.+
T Consensus 137 vrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVs 216 (311)
T PF12147_consen 137 VRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVS 216 (311)
T ss_pred eEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEe
Confidence 3999999999999888877632 5899999999999999887764 2555 99999999863222 3456999999
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+.++.+ .+.+-....+..+++.+.|||.++...
T Consensus 217 GL~ElF----~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 217 GLYELF----PDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred cchhhC----CcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 998877 122346778999999999999999865
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.8e-09 Score=85.83 Aligned_cols=95 Identities=22% Similarity=0.317 Sum_probs=67.5
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEE-----eCCHHHHHHHHHHccCCCCceEEEec--cccccccCCCCeeEEEeCc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNV-----DISSVVIEAMMKKYSNRPQLKYIKMD--VRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~-----D~s~~~i~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~fD~v~~~~ 121 (207)
..+||+|||+|.++..|.+.+. +.+ |..+..++.|.++- +.-..+- ...+ ||+.+.||+|.|..
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V---~t~s~a~~d~~~~qvqfaleRG-----vpa~~~~~~s~rL-Pfp~~~fDmvHcsr 189 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNV---TTMSFAPNDEHEAQVQFALERG-----VPAMIGVLGSQRL-PFPSNAFDMVHCSR 189 (506)
T ss_pred EEEEeccceeehhHHHHhhCCc---eEEEcccccCCchhhhhhhhcC-----cchhhhhhccccc-cCCccchhhhhccc
Confidence 4889999999999999999865 333 34444566665542 2222222 2334 89999999999988
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++..+ . .+-..++-++.|+|+|||.|+.+..
T Consensus 190 c~i~W-----~-~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 190 CLIPW-----H-PNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred ccccc-----h-hcccceeehhhhhhccCceEEecCC
Confidence 77654 1 2235688899999999999988663
|
; GO: 0008168 methyltransferase activity |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.9e-08 Score=74.94 Aligned_cols=85 Identities=11% Similarity=0.147 Sum_probs=67.5
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCC--
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT-- 111 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~-- 111 (207)
+.++++.+...++..+||.+||.|..+..+++... .+|+|+|.++.+++.+++++....++.+++.|+.++.....
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~ 87 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEG 87 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcC
Confidence 45667766555555999999999999999998752 58999999999999999887544579999999998632222
Q ss_pred -CCeeEEEeC
Q 028547 112 -GSFDSVVDK 120 (207)
Q Consensus 112 -~~fD~v~~~ 120 (207)
.++|.|++.
T Consensus 88 ~~~vDgIl~D 97 (296)
T PRK00050 88 LGKVDGILLD 97 (296)
T ss_pred CCccCEEEEC
Confidence 279999876
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-07 Score=68.15 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=78.4
Q ss_pred HHHHHHhh-CCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc-----
Q 028547 36 LAPLIKLY-VPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----- 107 (207)
Q Consensus 36 ~~~~l~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~----- 107 (207)
+.++.+.+ +-++..+|+|||+.+|.+++.+++... ..|+++|+.| ....+++.++++|+....
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p---------~~~~~~V~~iq~d~~~~~~~~~l 103 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP---------MKPIPGVIFLQGDITDEDTLEKL 103 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc---------cccCCCceEEeeeccCccHHHHH
Confidence 34444433 223345999999999999999998743 2599999987 233357999999999852
Q ss_pred --ccCCCCeeEEEeCcchhhhccCCC------ChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 108 --EFQTGSFDSVVDKGTLDSLLCGSN------SRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 108 --~~~~~~fD~v~~~~~l~~~~~~~~------~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
.+....+|+|++.+.-.. .+.. ...-....++-+..+|+|||.|++-.|-+...
T Consensus 104 ~~~l~~~~~DvV~sD~ap~~--~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 104 LEALGGAPVDVVLSDMAPNT--SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred HHHcCCCCcceEEecCCCCc--CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH
Confidence 124556799998755411 1111 11234445566678999999999988765543
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.6e-08 Score=75.26 Aligned_cols=131 Identities=19% Similarity=0.330 Sum_probs=92.6
Q ss_pred hhchhhhhcccCCcee--eecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHc
Q 028547 13 PWYWDNRYAHESGPFD--WYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY 90 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~ 90 (207)
.+|....|......|. -...+....++++.. +... .++|+|||.|.++..- ....++|+|++...+..+++.
T Consensus 11 qeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~-~~gs-v~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~- 84 (293)
T KOG1331|consen 11 QEYVHSIYDKIATHFSATRAAPWPMVRQFLDSQ-PTGS-VGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRS- 84 (293)
T ss_pred HHHhHHHHHHhhhhccccccCccHHHHHHHhcc-CCcc-eeeecccCCcccCcCC---CcceeeecchhhhhccccccC-
Confidence 3455555555544332 122233444555443 2333 8999999999765321 123789999999887777654
Q ss_pred cCCCCc-eEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 91 SNRPQL-KYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 91 ~~~~~~-~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+. ....+|+.+. |++..+||.+++..++||+. .......+++++.++|+|||...+...
T Consensus 85 ----~~~~~~~ad~l~~-p~~~~s~d~~lsiavihhls----T~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 85 ----GGDNVCRADALKL-PFREESFDAALSIAVIHHLS----TRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred ----CCceeehhhhhcC-CCCCCccccchhhhhhhhhh----hHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 34 6888999999 78999999999999999983 346788999999999999999777654
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.9e-07 Score=71.35 Aligned_cols=111 Identities=19% Similarity=0.215 Sum_probs=87.3
Q ss_pred HHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeE
Q 028547 40 IKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 40 l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
+........ +|+|+-+|-|.++..+++.+...|+++|++|.+++.+++++.-+ ..+..+++|..+..+ ....+|.
T Consensus 182 va~~v~~GE-~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~-~~~~aDr 259 (341)
T COG2520 182 VAELVKEGE-TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP-ELGVADR 259 (341)
T ss_pred HHhhhcCCC-EEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh-ccccCCE
Confidence 333334444 99999999999999999998756999999999999999998732 348899999999842 2388999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
|+++.+. ....++..+.+.+++||++.+..+.....
T Consensus 260 Iim~~p~-----------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 260 IIMGLPK-----------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred EEeCCCC-----------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 9987543 34567777788888899998877665544
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-06 Score=64.35 Aligned_cols=115 Identities=13% Similarity=0.188 Sum_probs=87.0
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-CCCCceEEEeccccc-cccCCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-NRPQLKYIKMDVRQM-DEFQTGS 113 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-~~~~~~~~~~d~~~~-~~~~~~~ 113 (207)
+.+.+...+..++.+||++|.|-|....++.+..+.+-+.++..++.++..+.... ...|+..+.+-..+. ...+++.
T Consensus 90 iMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~ 169 (271)
T KOG1709|consen 90 IMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKH 169 (271)
T ss_pred HHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccC
Confidence 34444444445555999999999999999988877788899999999999988654 336788888777664 2357888
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
||-|+-.-.-.+. ++...+.+.+.++|||+|+|-+..
T Consensus 170 FDGI~yDTy~e~y-------Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 170 FDGIYYDTYSELY-------EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred cceeEeechhhHH-------HHHHHHHHHHhhhcCCCceEEEec
Confidence 9999954222333 788999999999999999986543
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.1e-07 Score=65.31 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=73.3
Q ss_pred cEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc--CCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+++|+|+|.|-=++-++-..+ .+++.+|....-+...+.... +..|+.+++..+.+. ....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~--~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP--EYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT--TTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc--ccCCCccEEEeehh----
Confidence 899999999977776666544 489999999987777666544 336899999999982 35689999998865
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.....+++-+...+++||.++..-
T Consensus 125 -------~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 -------APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -------SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -------cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 455788899999999999988754
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-07 Score=66.81 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=62.5
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---CCCceEEEecccccccc-CCCC-eeEEEeCcchh
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEF-QTGS-FDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~-~~~~-fD~v~~~~~l~ 124 (207)
.|+|+.||.|..+..+++... .|+++|+++..++.++.++.- ..++.|+++|+.+..+. .... +|+|+++.+..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 699999999999999999854 999999999999999998762 25899999999997422 2222 89999987664
Q ss_pred hhcc------C---CCChhhHHHHHHHHHHhc
Q 028547 125 SLLC------G---SNSRQNATQMLKEVWRVL 147 (207)
Q Consensus 125 ~~~~------~---~~~~~~~~~~l~~~~~~L 147 (207)
.... . .-..-+...+++...++.
T Consensus 81 Gp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t 112 (163)
T PF09445_consen 81 GPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT 112 (163)
T ss_dssp SGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-
T ss_pred CccccccCccCHHHccCCCCHHHHHHHHHhhC
Confidence 3210 0 011225666666666554
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-06 Score=69.18 Aligned_cols=118 Identities=16% Similarity=0.205 Sum_probs=85.6
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhcCC---CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccc-cCC-CCeeE
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDDGY---EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDE-FQT-GSFDS 116 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~~~---~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~-~~~-~~fD~ 116 (207)
.++++.+|||++++.|.=+.++++... ..|+++|.++.-++..++++... .|+...+.|...... ... ++||.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 345556999999999988888877643 24699999999999888887743 567788888765421 122 35999
Q ss_pred EEeCcchhhhccCCCC---------------hhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 117 VVDKGTLDSLLCGSNS---------------RQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~---------------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|+...+....+..... ...+..+|..+.+.|||||.++++|++-.
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 9987666544311110 12577889999999999999999997543
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=69.15 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=83.2
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~ 128 (207)
...+|+|.|.|+.+..+... +.++.+++.+...+..+...+. +.+..+-+|..+.. | .-|+|++.-++|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~~--P--~~daI~mkWiLhdw-- 249 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQDT--P--KGDAIWMKWILHDW-- 249 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc--CCcceecccccccC--C--CcCeEEEEeecccC--
Confidence 48899999999999999994 5589999999988888877764 34778888888764 3 23699998888887
Q ss_pred CCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+.++..++|+++++.|+|+|.+++...
T Consensus 250 ---tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 ---TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ---ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 889999999999999999999999875
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.4e-07 Score=72.21 Aligned_cols=129 Identities=12% Similarity=0.202 Sum_probs=78.9
Q ss_pred ecCccCHHHHHHhhCC-CCCCcEEEEcCCCchhhHHHHhc--------CCCcEEEEeCCHHHHHHHHHHcc--CC--CCc
Q 028547 30 YQKYPSLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDD--------GYEDVVNVDISSVVIEAMMKKYS--NR--PQL 96 (207)
Q Consensus 30 ~~~~~~~~~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~--------~~~~v~~~D~s~~~i~~~~~~~~--~~--~~~ 96 (207)
+.....+..++..++. ....+|+|.+||+|.++..+.+. ...+++|+|+++.++..++.++. .. .+.
T Consensus 28 ~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~ 107 (311)
T PF02384_consen 28 FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNI 107 (311)
T ss_dssp C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGC
T ss_pred eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccc
Confidence 3344445555544443 33348999999999999887762 23499999999999998887643 11 234
Q ss_pred eEEEeccccccccC-CCCeeEEEeCcchhhhccCC--------------CChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 97 KYIKMDVRQMDEFQ-TGSFDSVVDKGTLDSLLCGS--------------NSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 97 ~~~~~d~~~~~~~~-~~~fD~v~~~~~l~~~~~~~--------------~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.+...|........ ...||+|+++.++....... ........++..+.+.|++||.+.++..
T Consensus 108 ~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 108 NIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 57788877653233 57999999998876541000 1112334588999999999999777653
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-06 Score=65.70 Aligned_cols=87 Identities=17% Similarity=0.307 Sum_probs=67.9
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccC--CCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ--TGS 113 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~ 113 (207)
+..+++.....++..|||+|+|.|.++..+++.+ .+++++|+++...+..++++...+++.++..|+.++.... ...
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~ 97 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQ 97 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSS
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCC
Confidence 4455555544444599999999999999999997 5999999999999999998886689999999999984221 235
Q ss_pred eeEEEeCcch
Q 028547 114 FDSVVDKGTL 123 (207)
Q Consensus 114 fD~v~~~~~l 123 (207)
...|+++-++
T Consensus 98 ~~~vv~NlPy 107 (262)
T PF00398_consen 98 PLLVVGNLPY 107 (262)
T ss_dssp EEEEEEEETG
T ss_pred ceEEEEEecc
Confidence 5677777554
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-06 Score=71.99 Aligned_cols=97 Identities=23% Similarity=0.270 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccC--CCCeeEEEeCcc
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQ--TGSFDSVVDKGT 122 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~--~~~fD~v~~~~~ 122 (207)
+..+|||+=||.|.++..+++... +|+|+|+++++++.|+++.+.+ .|+.|..+++.+..+.. ...+|.|+...+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence 434899999999999999997754 9999999999999999998743 67999999999974322 357899996543
Q ss_pred hhhhccCCCChhhHH-HHHHHHHHhcCCCcEEEE
Q 028547 123 LDSLLCGSNSRQNAT-QMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 123 l~~~~~~~~~~~~~~-~~l~~~~~~L~pgG~~~~ 155 (207)
= .... .+++.+.+ ++|..++|+
T Consensus 372 R----------~G~~~~~lk~l~~-~~p~~IvYV 394 (432)
T COG2265 372 R----------AGADREVLKQLAK-LKPKRIVYV 394 (432)
T ss_pred C----------CCCCHHHHHHHHh-cCCCcEEEE
Confidence 2 3334 44444444 466666665
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.7e-06 Score=66.72 Aligned_cols=107 Identities=12% Similarity=0.208 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHh----cC-CCcEEEEeCCHHHHHHHHHHcc-CC-CCceE--EEeccccccc-cC---
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVD----DG-YEDVVNVDISSVVIEAMMKKYS-NR-PQLKY--IKMDVRQMDE-FQ--- 110 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~----~~-~~~v~~~D~s~~~i~~~~~~~~-~~-~~~~~--~~~d~~~~~~-~~--- 110 (207)
++... .++|+|||+|.=+..+.+ .+ ...++++|+|.++++.+.+++. .. +.+.+ +++|..+... .+
T Consensus 74 i~~~~-~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~ 152 (319)
T TIGR03439 74 IPSGS-MLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPE 152 (319)
T ss_pred cCCCC-EEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccc
Confidence 44444 899999999966554433 22 2489999999999999999887 33 56665 6777766411 11
Q ss_pred -CCCeeEEEe-CcchhhhccCCCChhhHHHHHHHHHH-hcCCCcEEEEE
Q 028547 111 -TGSFDSVVD-KGTLDSLLCGSNSRQNATQMLKEVWR-VLKDKGVYILV 156 (207)
Q Consensus 111 -~~~fD~v~~-~~~l~~~~~~~~~~~~~~~~l~~~~~-~L~pgG~~~~~ 156 (207)
.....+++. ...+..+ .......+|+++++ .|+|||.|++-
T Consensus 153 ~~~~~r~~~flGSsiGNf-----~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 153 NRSRPTTILWLGSSIGNF-----SRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred ccCCccEEEEeCccccCC-----CHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 223455554 2344444 67888999999999 99999988774
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.3e-06 Score=66.56 Aligned_cols=108 Identities=14% Similarity=0.155 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC---------------------------------C-------cEEEEeCCHHHHHH
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY---------------------------------E-------DVVNVDISSVVIEA 85 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~---------------------------------~-------~v~~~D~s~~~i~~ 85 (207)
++...++|.-||+|.++++.+..+. + .++|+|+++.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 3335899999999999998887652 0 27799999999999
Q ss_pred HHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhh----HHHHHHHHHHhcCCCcEEEEEE
Q 028547 86 MMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQN----ATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 86 ~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~----~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+.|.... .-|.|.++|+..+.+ +.+.+|+|+++.++.-- ...... ...+.+.+.+.++.-+.+++++
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~-~~~~~gvvI~NPPYGeR---lg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKE-PLEEYGVVISNPPYGER---LGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCC-CCCcCCEEEeCCCcchh---cCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 99997743 469999999999842 22789999999887532 112222 3334444456666666777665
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.9e-06 Score=62.44 Aligned_cols=100 Identities=17% Similarity=0.186 Sum_probs=76.1
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccc-----ccCCCCeeEE
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMD-----EFQTGSFDSV 117 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~-----~~~~~~fD~v 117 (207)
++++||+|.=+|+-+..++..-+ .+|+++|++++..+...+..+.. ..+.++++.+.+.. ....++||++
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 35999999999987777766532 49999999999999887655422 46889998877741 1246799999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|. ++. ........+++.+++|+||++++-.
T Consensus 154 Fv----Dad------K~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 154 FV----DAD------KDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EE----ccc------hHHHHHHHHHHHhhcccccEEEEec
Confidence 94 443 2344588999999999999999854
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.4e-06 Score=57.85 Aligned_cols=102 Identities=25% Similarity=0.364 Sum_probs=71.9
Q ss_pred EEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCCCC--ceEEEecccc-ccccCC-CCeeEEEeCcchh
Q 028547 51 ILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQ--LKYIKMDVRQ-MDEFQT-GSFDSVVDKGTLD 124 (207)
Q Consensus 51 vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~~~--~~~~~~d~~~-~~~~~~-~~fD~v~~~~~l~ 124 (207)
++|+|||+|... .+..... ..++++|+++.++..++........ +.+...+... ..++.. ..||++......+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999965 3333322 2788999999998885554422111 5788888776 234555 4899995444444
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+. . ....+.++.+.++|+|.+++......
T Consensus 131 ~~-------~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 131 LL-------P-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred cC-------C-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 33 2 78899999999999999999875443
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.3e-06 Score=72.91 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=55.6
Q ss_pred CcEEEEcCCCchhhHHHHhcC--------C-CcEEEEeCCHHHHHHHHHHccCCC--CceEEEecccccc----ccCCCC
Q 028547 49 QRILIVGCGNSAFSEGMVDDG--------Y-EDVVNVDISSVVIEAMMKKYSNRP--QLKYIKMDVRQMD----EFQTGS 113 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~--------~-~~v~~~D~s~~~i~~~~~~~~~~~--~~~~~~~d~~~~~----~~~~~~ 113 (207)
.+|||.|||+|.++..++... . .+++|+|+++.++..++.++.... .+.+.+.|..... ....+.
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~ 112 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLDL 112 (524)
T ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccCc
Confidence 389999999999998887642 1 378999999999999988765432 3444544433210 112358
Q ss_pred eeEEEeCcchhhh
Q 028547 114 FDSVVDKGTLDSL 126 (207)
Q Consensus 114 fD~v~~~~~l~~~ 126 (207)
||+|+++.++..+
T Consensus 113 fD~IIgNPPy~~~ 125 (524)
T TIGR02987 113 FDIVITNPPYGRL 125 (524)
T ss_pred ccEEEeCCCcccc
Confidence 9999999988754
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.6e-06 Score=63.40 Aligned_cols=113 Identities=14% Similarity=0.069 Sum_probs=66.4
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHcc-----------CCCCceEEEec
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS-----------NRPQLKYIKMD 102 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~-----------~~~~~~~~~~d 102 (207)
.+..+++.....+...++|||||.|......+.. ++...+|+|+.+...+.++.... ....+.+..+|
T Consensus 30 ~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 30 FVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 3556666554444459999999999988776654 55569999999987766654221 12457788888
Q ss_pred ccccccc--CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 103 VRQMDEF--QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 103 ~~~~~~~--~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
+.+.... .-...|+|++++.... ++....+.+....||+|..++-
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~F~--------~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTCFD--------PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TTT---------HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccccHhHhhhhcCCCEEEEeccccC--------HHHHHHHHHHHhcCCCCCEEEE
Confidence 8764210 1135799999876542 4666677888888888766654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.7e-06 Score=65.07 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCchhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccCCCCceE---EEeccccccccCCCCeeEEEeCc
Q 028547 47 HHQRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNRPQLKY---IKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
.+.+|||+|||+|.-+-.+.+. ...+++++|.|+.+++.++..+....+... ......+.. +....|+|++..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL--PFPPDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc--cCCCCcEEEEeh
Confidence 3459999999999755443332 235999999999999998886654322111 111111111 222349999999
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+|..+ +......+++++.+.+++ .++++..+.+
T Consensus 111 ~L~EL-----~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 111 VLNEL-----PSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred hhhcC-----CchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 98887 226677888888887765 7777765544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-06 Score=59.36 Aligned_cols=88 Identities=20% Similarity=0.317 Sum_probs=63.2
Q ss_pred cEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCC-CeeEEEeCcchhhhccCC----CChhhHHHHHHHH
Q 028547 72 DVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG-SFDSVVDKGTLDSLLCGS----NSRQNATQMLKEV 143 (207)
Q Consensus 72 ~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~-~fD~v~~~~~l~~~~~~~----~~~~~~~~~l~~~ 143 (207)
+|+++|+.+++++..++++.+. .++.++..+-.++..+-+. ++|+++.+ +.++..+. ...+.....++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999998743 4699999888887544444 89999987 66663222 2345788899999
Q ss_pred HHhcCCCcEEEEEEeCCc
Q 028547 144 WRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 144 ~~~L~pgG~~~~~~~~~~ 161 (207)
.+.|+|||.+.++.|.+.
T Consensus 79 l~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHEEEEEEEEEEE--ST
T ss_pred HHhhccCCEEEEEEeCCC
Confidence 999999999999998654
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-06 Score=70.26 Aligned_cols=100 Identities=21% Similarity=0.270 Sum_probs=83.7
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.++|+|||.|.....++..+.+.++|+|.++..+..+....... ....++..|+.+. ++++..||.+.+.....|.
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~-~fedn~fd~v~~ld~~~~~ 191 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM-PFEDNTFDGVRFLEVVCHA 191 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC-CCCccccCcEEEEeecccC
Confidence 79999999999999998887679999999998777665543321 2344577888888 7899999999998888887
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+....+++++++++|||.++...
T Consensus 192 -------~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 192 -------PDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred -------CcHHHHHHHHhcccCCCceEEeHH
Confidence 889999999999999999999865
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-06 Score=62.65 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=75.9
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc--CCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+.|+|+|+|.++...++. ..+|++++.+|...+.+.+++. ...|+.++.+|+.+.. | +..|+|+|-. ++..+
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~-f--e~ADvvicEm-lDTaL 109 (252)
T COG4076 35 TFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD-F--ENADVVICEM-LDTAL 109 (252)
T ss_pred ceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-c--cccceeHHHH-hhHHh
Confidence 8999999999999988887 5599999999999999999854 4478999999999984 5 5679999763 33321
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
- .+.....+..+...||.++.++-
T Consensus 110 i----~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 110 I----EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred h----cccccHHHHHHHHHhhcCCcccc
Confidence 1 13455667777778888887764
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.6e-06 Score=71.30 Aligned_cols=107 Identities=17% Similarity=0.163 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCchhhHHHHhcC-------------------------------------------CCcEEEEeCCHHHHH
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG-------------------------------------------YEDVVNVDISSVVIE 84 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~-------------------------------------------~~~v~~~D~s~~~i~ 84 (207)
+..++|.+||+|.++++.+... ..+++|+|+++.+++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 3499999999999998876520 025899999999999
Q ss_pred HHHHHccCC---CCceEEEeccccccc-cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcC---CCcEEEEEE
Q 028547 85 AMMKKYSNR---PQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLK---DKGVYILVT 157 (207)
Q Consensus 85 ~~~~~~~~~---~~~~~~~~d~~~~~~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~---pgG~~~~~~ 157 (207)
.|++++... ..+.|.++|+.+... ...++||+|+++.++..-. ....+...+.+.+.+.++ +|+.+++.+
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~---~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERL---GEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCcc---CchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 999997743 357899999988731 2235799999998875321 112344445455444444 888887766
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.4e-06 Score=65.26 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=65.7
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
++.++||+||++|.++..+.+.|. .|++||..+- ...+...+++.....|.....| +.+.+|.++|..+
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l-----~~~L~~~~~V~h~~~d~fr~~p-~~~~vDwvVcDmv---- 279 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPM-----AQSLMDTGQVEHLRADGFKFRP-PRKNVDWLVCDMV---- 279 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhc-----CHhhhCCCCEEEEeccCcccCC-CCCCCCEEEEecc----
Confidence 445999999999999999999988 9999996551 2223344688888888887743 2678999998744
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCC
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDK 150 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pg 150 (207)
..+....+-+.++|..|
T Consensus 280 -------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 -------EKPARVAELMAQWLVNG 296 (357)
T ss_pred -------cCHHHHHHHHHHHHhcC
Confidence 44567777788888765
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-05 Score=58.93 Aligned_cols=121 Identities=18% Similarity=0.235 Sum_probs=81.6
Q ss_pred eeecCccCHHHHHHhhC----CCCCCcEEEEcCCCchhhHHHHhc-C-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEe
Q 028547 28 DWYQKYPSLAPLIKLYV----PSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM 101 (207)
Q Consensus 28 ~~~~~~~~~~~~l~~~~----~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~ 101 (207)
.|.+..+.+...+..-+ -+++.+||-+|+++|....+++.- + -..|++||.|+...+..-.-....+|+--+..
T Consensus 50 ~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~ 129 (229)
T PF01269_consen 50 VWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILE 129 (229)
T ss_dssp EE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES
T ss_pred ecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeec
Confidence 46666666776664322 233449999999999888887774 3 24899999999765555444444478888999
Q ss_pred ccccccccC--CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 102 DVRQMDEFQ--TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 102 d~~~~~~~~--~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+.....+. -+.+|+|++. +.. +....-++.++...||+||.++++.
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~D--VaQ-------p~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQD--VAQ-------PDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE---SS-------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCChHHhhcccccccEEEec--CCC-------hHHHHHHHHHHHhhccCCcEEEEEE
Confidence 999863332 3589999975 211 2677788888899999999999875
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.4e-07 Score=67.68 Aligned_cols=93 Identities=18% Similarity=0.258 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+.++||+|+|.|..+..++.. +.+|++.+.|..|+...+++- .. +....+.. ..+-+||+|.|.+.++.-
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~-----yn--Vl~~~ew~-~t~~k~dli~clNlLDRc- 182 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKN-----YN--VLTEIEWL-QTDVKLDLILCLNLLDRC- 182 (288)
T ss_pred CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcC-----Cc--eeeehhhh-hcCceeehHHHHHHHHhh-
Confidence 359999999999999988876 459999999999999988752 22 22233331 234579999998888854
Q ss_pred cCCCChhhHHHHHHHHHHhcCC-CcEEEEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKD-KGVYILV 156 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~p-gG~~~~~ 156 (207)
.++-.+++.++.+|+| +|.+++.
T Consensus 183 ------~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 183 ------FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ------cChHHHHHHHHHHhccCCCcEEEE
Confidence 6788999999999999 7887764
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.9e-06 Score=65.82 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=85.6
Q ss_pred hCCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccc-cCCCCeeEE
Q 028547 43 YVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDE-FQTGSFDSV 117 (207)
Q Consensus 43 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~-~~~~~fD~v 117 (207)
+.+.++.+|||++++.|.=+..+++... ..++++|+++.-+...+.+.... .++.....|..+..+ .....||.|
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 3445556999999999988888887632 59999999999998888876633 577777788887632 234469999
Q ss_pred EeCcchhhhccCC-CC--------------hhhHHHHHHHHHHhc----CCCcEEEEEEe
Q 028547 118 VDKGTLDSLLCGS-NS--------------RQNATQMLKEVWRVL----KDKGVYILVTY 158 (207)
Q Consensus 118 ~~~~~l~~~~~~~-~~--------------~~~~~~~l~~~~~~L----~pgG~~~~~~~ 158 (207)
+...+......-. .+ ......+|+.+.+.+ +|||.++++|+
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 9876655442111 11 124778899999999 99999999996
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-06 Score=62.36 Aligned_cols=90 Identities=22% Similarity=0.332 Sum_probs=70.2
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---CCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---QTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~fD~v~~~~~l~~ 125 (207)
.++|||||=+....+.- .+.-.|+.+|+.+ ....+.+.|+.+. |. ..+.||+|.++.++.+
T Consensus 53 lrlLEVGals~~N~~s~--~~~fdvt~IDLns-------------~~~~I~qqDFm~r-plp~~~~e~FdvIs~SLVLNf 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SGWFDVTRIDLNS-------------QHPGILQQDFMER-PLPKNESEKFDVISLSLVLNF 116 (219)
T ss_pred ceEEeecccCCCCcccc--cCceeeEEeecCC-------------CCCCceeeccccC-CCCCCcccceeEEEEEEEEee
Confidence 49999999766554432 2333799999977 2456788899986 44 4679999999999998
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcE-----EEEEEe
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGV-----YILVTY 158 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~-----~~~~~~ 158 (207)
+ ++.......++++++.|+|+|. ++++..
T Consensus 117 V----P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 117 V----PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred C----CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence 7 3457889999999999999999 887763
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.23 E-value=4e-06 Score=67.78 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=54.9
Q ss_pred hhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccc-----------
Q 028547 42 LYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDE----------- 108 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~----------- 108 (207)
..+...+..|||+-||.|.++..+++... +|+|+|+++.+++.|++++.. ..|+.|+.+++.+...
T Consensus 191 ~~l~~~~~~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~ 269 (352)
T PF05958_consen 191 EWLDLSKGDVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRL 269 (352)
T ss_dssp HHCTT-TTEEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTG
T ss_pred HHhhcCCCcEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhh
Confidence 33443333899999999999999998854 999999999999999998873 3789999887654310
Q ss_pred ----cCCCCeeEEEeCcchh
Q 028547 109 ----FQTGSFDSVVDKGTLD 124 (207)
Q Consensus 109 ----~~~~~fD~v~~~~~l~ 124 (207)
.....+|+|+..++=.
T Consensus 270 ~~~~~~~~~~d~vilDPPR~ 289 (352)
T PF05958_consen 270 KGIDLKSFKFDAVILDPPRA 289 (352)
T ss_dssp GGS-GGCTTESEEEE---TT
T ss_pred hhhhhhhcCCCEEEEcCCCC
Confidence 1123689998664433
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.6e-06 Score=63.88 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=60.0
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--C-CCceEEEeccccc---cccCCCCeeEEEeCcch
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQM---DEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~-~~~~~~~~d~~~~---~~~~~~~fD~v~~~~~l 123 (207)
.|+|.-||.|..+...+..++ .|+++|+++.-|..|+.+++- . .++.|+++|+.+. +.+....+|+|+.+++.
T Consensus 97 ~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppw 175 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSPPW 175 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCCCC
Confidence 899999999988888888877 999999999999999999872 1 4899999999985 22344557788876554
Q ss_pred h
Q 028547 124 D 124 (207)
Q Consensus 124 ~ 124 (207)
.
T Consensus 176 g 176 (263)
T KOG2730|consen 176 G 176 (263)
T ss_pred C
Confidence 4
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.7e-05 Score=61.84 Aligned_cols=107 Identities=19% Similarity=0.264 Sum_probs=80.4
Q ss_pred CcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHc--c-------CCCCceEEEeccccccccCCCCeeEEE
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKY--S-------NRPQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~--~-------~~~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
.+||-+|.|.|.-+.++.+.. ..+++-+|.+|++++.++++. . ..++++++..|+.++..-..+.||+||
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI 370 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI 370 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence 499999999999999999985 579999999999999998431 1 126889999999997444567999999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.... +.- ......-.-..+..-+.+.|+++|.+++..
T Consensus 371 VDl~-DP~-tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 371 VDLP-DPS-TPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EeCC-CCC-CcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 6421 100 000122356778888899999999999854
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.3e-06 Score=60.61 Aligned_cols=97 Identities=12% Similarity=0.135 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc--CCCCceEEEeccccccccCCCC-eeEEEeCcch
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGS-FDSVVDKGTL 123 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~-fD~v~~~~~l 123 (207)
+.+++|||+|.|-=+.-++-..+ .+++.+|....-+.+.+.-.. +.+|+++++..+.+... ... ||+|.+..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~--~~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ--EKKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc--ccccCcEEEeehc-
Confidence 35999999999977777664332 379999998877777666544 33689999999999842 223 999998854
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.....+.+-+..++++||.++..-
T Consensus 145 ----------a~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 145 ----------ASLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred ----------cchHHHHHHHHHhcccCCcchhhh
Confidence 556788888999999998876433
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.7e-05 Score=58.39 Aligned_cols=109 Identities=19% Similarity=0.292 Sum_probs=75.5
Q ss_pred HHHHHHhh-CCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCc-eEEEecccccccc-CCC
Q 028547 36 LAPLIKLY-VPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQL-KYIKMDVRQMDEF-QTG 112 (207)
Q Consensus 36 ~~~~l~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~-~~~~~d~~~~~~~-~~~ 112 (207)
+..+++.+ +...++.+||+|+-||.++..+.+.|.+.|+++|.....++.--+. .+++ .+...|+..+.+. -.+
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~---d~rV~~~E~tN~r~l~~~~~~~ 143 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN---DPRVIVLERTNVRYLTPEDFTE 143 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc---CCcEEEEecCChhhCCHHHccc
Confidence 34444443 2334459999999999999999999999999999988766654333 2232 3334566654221 123
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..|++++.-.+-. ...++..+..+++++|-++...
T Consensus 144 ~~d~~v~DvSFIS----------L~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 144 KPDLIVIDVSFIS----------LKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred CCCeEEEEeehhh----------HHHHHHHHHHhcCCCceEEEEe
Confidence 6788998754443 4888999999999998887754
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.4e-05 Score=58.13 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=73.5
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
++|||+|+|+|.-++..+..|...|...|+.+..++...-|...+ .++.+...|..- .+..||+++...++..-
T Consensus 81 krVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g----~~~~~Dl~LagDlfy~~- 155 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG----SPPAFDLLLAGDLFYNH- 155 (218)
T ss_pred ceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC----CCcceeEEEeeceecCc-
Confidence 599999999999999999998889999999998888877776643 567777777665 35689999998877642
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.....++. ..+.|+..|.-+++
T Consensus 156 ------~~a~~l~~-~~~~l~~~g~~vlv 177 (218)
T COG3897 156 ------TEADRLIP-WKDRLAEAGAAVLV 177 (218)
T ss_pred ------hHHHHHHH-HHHHHHhCCCEEEE
Confidence 56666666 55556665665553
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.4e-05 Score=57.51 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=73.1
Q ss_pred EEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 51 ILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 51 vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
|.|+||.-|.+...+.+.+. ..++++|+++..++.|++++... ..+.+..+|..+..+ +.+..|.|+..++=.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG-- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGG-- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-H--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCH--
Confidence 68999999999999999986 58999999999999999987632 578999999877521 333478888766533
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccc
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML 168 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~ 168 (207)
.-...++++....++....|++..........+++
T Consensus 78 -------~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L 112 (205)
T PF04816_consen 78 -------ELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWL 112 (205)
T ss_dssp -------HHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHH
T ss_pred -------HHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHH
Confidence 56777787777777665566665544433333333
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-05 Score=60.39 Aligned_cols=75 Identities=12% Similarity=-0.009 Sum_probs=59.9
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-----------CCceEEEeccccccccCCCCeeEEE
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-----------PQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-----------~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
+|||+-+|+|..+..++..|+ +|+++|-++......+..+... .++++++.|..++......+||+|+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 899999999999999999998 6999999998777666554321 3578888888886433345799999
Q ss_pred eCcchhh
Q 028547 119 DKGTLDS 125 (207)
Q Consensus 119 ~~~~l~~ 125 (207)
...++.+
T Consensus 170 lDPMfp~ 176 (250)
T PRK10742 170 LDPMFPH 176 (250)
T ss_pred ECCCCCC
Confidence 8877755
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.4e-05 Score=56.77 Aligned_cols=108 Identities=14% Similarity=0.198 Sum_probs=79.3
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccccc
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEF 109 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~ 109 (207)
.+..++..+.-.++.+|+|-|.|+|.++..+++. ++ .+++.+|+-+.-.+.+.+.++.. .++.+.+-|++..- |
T Consensus 93 Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G-F 171 (314)
T KOG2915|consen 93 DIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG-F 171 (314)
T ss_pred cHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC-c
Confidence 3555565555566669999999999999999886 33 59999999988888888777642 68999999999862 3
Q ss_pred C--CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 110 Q--TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 110 ~--~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
. ...+|.|+...+- +-.++..++++|+.+|.-++
T Consensus 172 ~~ks~~aDaVFLDlPa------------Pw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 172 LIKSLKADAVFLDLPA------------PWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred cccccccceEEEcCCC------------hhhhhhhhHHHhhhcCceEE
Confidence 3 5689999965433 33355556778888775333
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.8e-05 Score=54.52 Aligned_cols=102 Identities=14% Similarity=0.141 Sum_probs=66.1
Q ss_pred CcEEEEcCCCchhhHHHHhcC-C-CcEEEEeCCHHHHHHHHHHccCCCCceEEEe-ccccc-------cccCCCCeeEEE
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-Y-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DVRQM-------DEFQTGSFDSVV 118 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~-d~~~~-------~~~~~~~fD~v~ 118 (207)
.+|||+||.+|.+++...+.- + .-|.|+|+.. +...+...++++ |+.+. ...++...|+|+
T Consensus 71 ~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVl 141 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVL 141 (232)
T ss_pred CEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEE
Confidence 499999999999999888863 3 5899999855 222234455554 66663 224778999999
Q ss_pred eCcchhhhccCCCChhhHHHHH-------HHHHHhcCCCcEEEEEEeCCcc
Q 028547 119 DKGTLDSLLCGSNSRQNATQML-------KEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l-------~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
+.+.-..-+.. ..|....+ .-....++|+|.|++-.+.+..
T Consensus 142 SDMapnaTGvr---~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 142 SDMAPNATGVR---IRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred eccCCCCcCcc---hhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 87543322111 12333333 3335667899999998875543
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.9e-05 Score=59.66 Aligned_cols=116 Identities=20% Similarity=0.278 Sum_probs=75.5
Q ss_pred cCHHHHHHhhCCCC-----CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHc---c--C-----------
Q 028547 34 PSLAPLIKLYVPSH-----HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY---S--N----------- 92 (207)
Q Consensus 34 ~~~~~~l~~~~~~~-----~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~---~--~----------- 92 (207)
+.+.+.|..+.+.. .-+||-.|||.|+++..++..|+ ...|-|.|--|+-...=.+ . +
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~ 210 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQY 210 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecc
Confidence 34555555554442 12999999999999999999988 6677677665433221000 0 0
Q ss_pred --------------C------------CCceEEEeccccccc--cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHH
Q 028547 93 --------------R------------PQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVW 144 (207)
Q Consensus 93 --------------~------------~~~~~~~~d~~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~ 144 (207)
. .+.....+|+.+.-+ -..+.||+|+....++.- .+.-..++.+.
T Consensus 211 sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa-------~NileYi~tI~ 283 (369)
T KOG2798|consen 211 SNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA-------HNILEYIDTIY 283 (369)
T ss_pred ccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech-------HHHHHHHHHHH
Confidence 0 012224456666411 123479999987666654 88999999999
Q ss_pred HhcCCCcEEEEEE
Q 028547 145 RVLKDKGVYILVT 157 (207)
Q Consensus 145 ~~L~pgG~~~~~~ 157 (207)
++|+|||+++-..
T Consensus 284 ~iLk~GGvWiNlG 296 (369)
T KOG2798|consen 284 KILKPGGVWINLG 296 (369)
T ss_pred HhccCCcEEEecc
Confidence 9999999987643
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00027 Score=51.81 Aligned_cols=123 Identities=16% Similarity=0.251 Sum_probs=88.0
Q ss_pred ceeeecCccCHHHHHHhhC----CCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE
Q 028547 26 PFDWYQKYPSLAPLIKLYV----PSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK 100 (207)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~~----~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~ 100 (207)
.-.|....+.+...+..-+ -+++.+||-+|+.+|....+++.- +...+++++.|+......-..+.+.+|+.-+.
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL 130 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPIL 130 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeee
Confidence 3356666666666554322 234459999999999888888775 22489999999988777666666667888888
Q ss_pred ecccccccc--CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 101 MDVRQMDEF--QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 101 ~d~~~~~~~--~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|+.....+ --+..|+|+.. +. .+....-+..++...|++||.++++.
T Consensus 131 ~DA~~P~~Y~~~Ve~VDviy~D--VA-------Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 131 EDARKPEKYRHLVEKVDVIYQD--VA-------QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cccCCcHHhhhhcccccEEEEe--cC-------CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 999886332 23568999864 11 23677888899999999999766643
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.8e-05 Score=53.84 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=46.8
Q ss_pred cEEEEcCCCchhhHHHHhcCCC-cEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQM 106 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~-~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~ 106 (207)
+|||+|||.|.++..+++.+.. +++++|+++.+.+.+++++... .++.+++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 4899999999999999988763 7999999999999999987632 4677777666653
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0001 Score=56.73 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=70.6
Q ss_pred CcEEEEcCCC--chhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCCCC--ceEEEeccccccccC-----CCCee--
Q 028547 49 QRILIVGCGN--SAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNRPQ--LKYIKMDVRQMDEFQ-----TGSFD-- 115 (207)
Q Consensus 49 ~~vLdiG~G~--G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~~~--~~~~~~d~~~~~~~~-----~~~fD-- 115 (207)
..+||||||- ....-++++. .+ ++|.-+|.++..+..++..+...++ ..++.+|+.+....- .+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 5899999994 2344455543 22 5999999999999999998887666 889999999852111 12233
Q ss_pred ---EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 116 ---SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 116 ---~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.+++..++|++ .+.++...++..+...|.||..+.++.....
T Consensus 150 rPVavll~~vLh~v----~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 150 RPVAVLLVAVLHFV----PDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp S--EEEECT-GGGS-----CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCeeeeeeeeeccC----CCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 56677788887 3446899999999999999999999886554
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00021 Score=50.10 Aligned_cols=70 Identities=17% Similarity=0.300 Sum_probs=51.4
Q ss_pred CCcEEEEcCCCchhhHHHHh-----cCCCcEEEEeCCHHHHHHHHHHccCC-----CCceEEEeccccccccCCCCeeEE
Q 028547 48 HQRILIVGCGNSAFSEGMVD-----DGYEDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~-----~~~~~v~~~D~s~~~i~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
...|+|+|||.|+++..++. ....+|+++|.++..++.+.++.... .+..+...++.+.. .....+++
T Consensus 26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 103 (141)
T PF13679_consen 26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES--SSDPPDIL 103 (141)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc--ccCCCeEE
Confidence 34999999999999999998 42249999999999988887765421 35666666655542 24556777
Q ss_pred Ee
Q 028547 118 VD 119 (207)
Q Consensus 118 ~~ 119 (207)
+.
T Consensus 104 vg 105 (141)
T PF13679_consen 104 VG 105 (141)
T ss_pred EE
Confidence 75
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00016 Score=58.45 Aligned_cols=118 Identities=16% Similarity=0.144 Sum_probs=83.7
Q ss_pred hCCCCCCcEEEEcCCCchhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccc--cccCCCCeeE
Q 028547 43 YVPSHHQRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQM--DEFQTGSFDS 116 (207)
Q Consensus 43 ~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~--~~~~~~~fD~ 116 (207)
+.++++.+|||+++..|.=+.+++.. +-..|++.|.+..-+...+.++... .|..+.+.|..++ ..++. +||.
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDR 315 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccce
Confidence 34555569999999998666666553 1248999999999888888877643 5777778888765 12344 8999
Q ss_pred EEeCcchhhhccCCC---------------ChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 117 VVDKGTLDSLLCGSN---------------SRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 117 v~~~~~l~~~~~~~~---------------~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|+...+......... -..-+.++|..+.+++++||+++.+|++-.
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 997766554211110 112467788888999999999999997543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00028 Score=54.80 Aligned_cols=103 Identities=15% Similarity=0.275 Sum_probs=64.2
Q ss_pred CCcEEEEcCCCchhh-HHHHhc-CC-CcEEEEeCCHHHHHHHHHHccC----CCCceEEEeccccccccCCCCeeEEEeC
Q 028547 48 HQRILIVGCGNSAFS-EGMVDD-GY-EDVVNVDISSVVIEAMMKKYSN----RPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~-~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
+.+|+=||||.=-++ ..+++. +. ..++++|+++++++.+++-... ..++.|+.+|..+. ......||+|+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~-~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDV-TYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG--GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcc-ccccccCCEEEEh
Confidence 349999999975444 444433 32 4799999999999999886552 25789999999877 3445789999976
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..... ..+....+++++.+.++||..+++-.
T Consensus 200 alVg~------~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGM------DAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S----------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhccc------ccchHHHHHHHHHhhCCCCcEEEEec
Confidence 54431 33578899999999999999988875
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.5e-05 Score=53.05 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=44.2
Q ss_pred EEEcCCCchhhHHHHhcC---C-CcEEEEeCCHH---HHHHHHHHccCCCCceEEEeccccccc-cCCCCeeEEEeCcch
Q 028547 52 LIVGCGNSAFSEGMVDDG---Y-EDVVNVDISSV---VIEAMMKKYSNRPQLKYIKMDVRQMDE-FQTGSFDSVVDKGTL 123 (207)
Q Consensus 52 LdiG~G~G~~~~~l~~~~---~-~~v~~~D~s~~---~i~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~fD~v~~~~~l 123 (207)
||+|+..|..+..+++.- . .+++++|..+. ..+..++ ..-..+++++.++..+..+ ++.+++|+|+..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 689999998888877642 1 37999999984 3233322 1112479999999877522 33579999997642
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
| ........++.+.+.|+|||++++-+
T Consensus 79 H-------~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 H-------SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-------CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1 12567778889999999999988754
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0011 Score=51.75 Aligned_cols=85 Identities=12% Similarity=0.220 Sum_probs=66.0
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccc----c
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMD----E 108 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~----~ 108 (207)
+.+.+..+..++....+|.--|.|..+..+++... +.++++|-++.+++.+++++... .++.+++.++.++. .
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~ 91 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKE 91 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHh
Confidence 45667766666666999999999999999998864 57999999999999999988753 68999998877752 1
Q ss_pred cCCCCeeEEEeC
Q 028547 109 FQTGSFDSVVDK 120 (207)
Q Consensus 109 ~~~~~fD~v~~~ 120 (207)
...+.+|-|+..
T Consensus 92 ~~i~~vDGiL~D 103 (314)
T COG0275 92 LGIGKVDGILLD 103 (314)
T ss_pred cCCCceeEEEEe
Confidence 223566666644
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00056 Score=50.87 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=77.0
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCe
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~f 114 (207)
.+..+.+... ++.|+||.-|++...+.+.+. ..+++.|+++..++.|.+++... ..++...+|..... ..++.+
T Consensus 9 ~va~~V~~~~-~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l-~~~d~~ 86 (226)
T COG2384 9 TVANLVKQGA-RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL-ELEDEI 86 (226)
T ss_pred HHHHHHHcCC-ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc-CccCCc
Confidence 3445555665 799999999999999999875 58999999999999999988754 45666677775542 244589
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
|.|+..++=. .-+..++++-.+.|+.--.+++
T Consensus 87 d~ivIAGMGG---------~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 87 DVIVIAGMGG---------TLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred CEEEEeCCcH---------HHHHHHHHHhhhhhcCcceEEE
Confidence 9888765533 4567777777777763323443
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=53.86 Aligned_cols=107 Identities=14% Similarity=0.224 Sum_probs=68.4
Q ss_pred cEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc-------C--CCCceEEEeccccccc--cCCCCee-E
Q 028547 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS-------N--RPQLKYIKMDVRQMDE--FQTGSFD-S 116 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~-------~--~~~~~~~~~d~~~~~~--~~~~~fD-~ 116 (207)
.+.|||||-|.++..++...+ +-+.|++|--..-+..+.+.. . ..|+.+...+.....| +..+... .
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskm 142 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKM 142 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccc
Confidence 789999999999999999876 588899987777666666543 1 2578888888877633 2222222 1
Q ss_pred EEeCcchhhhccCC-CChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 117 VVDKGTLDSLLCGS-NSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.++..--|.. ... ...--...++.+..-+|++||.++.++
T Consensus 143 ff~fpdpHfk-~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 143 FFLFPDPHFK-ARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred eeecCChhHh-hhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 2222111111 000 011134556777888999999999877
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00038 Score=54.89 Aligned_cols=85 Identities=11% Similarity=0.112 Sum_probs=65.6
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccc----c
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDE----F 109 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~----~ 109 (207)
+.+.++.+..+++..++|.-+|.|..+..+++.. ..+|+|+|.++.+++.+++++... .++.+++.++.++.. .
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~ 88 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDEL 88 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc
Confidence 4466666655555599999999999999998863 259999999999999999887643 578999998887521 1
Q ss_pred CCCCeeEEEeC
Q 028547 110 QTGSFDSVVDK 120 (207)
Q Consensus 110 ~~~~fD~v~~~ 120 (207)
...++|.|+..
T Consensus 89 ~~~~vDgIl~D 99 (305)
T TIGR00006 89 LVTKIDGILVD 99 (305)
T ss_pred CCCcccEEEEe
Confidence 33568888866
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00022 Score=55.93 Aligned_cols=75 Identities=19% Similarity=0.194 Sum_probs=42.9
Q ss_pred cEEEEcCCCchhhHHH-Hh-cCCCcEEEEeCCHHHHHHHHHHccCC----CCceEEEec----cccccccCCCCeeEEEe
Q 028547 50 RILIVGCGNSAFSEGM-VD-DGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMD----VRQMDEFQTGSFDSVVD 119 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l-~~-~~~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d----~~~~~~~~~~~fD~v~~ 119 (207)
++||||+|....-..+ ++ .++ +++|.|+++..++.|++++... .+|.++... +........+.||+++|
T Consensus 105 ~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC 183 (299)
T PF05971_consen 105 RGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMC 183 (299)
T ss_dssp EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred EeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEec
Confidence 8999999986443333 32 366 9999999999999999987643 356666543 22211123568999999
Q ss_pred Ccchhh
Q 028547 120 KGTLDS 125 (207)
Q Consensus 120 ~~~l~~ 125 (207)
+.+++.
T Consensus 184 NPPFy~ 189 (299)
T PF05971_consen 184 NPPFYS 189 (299)
T ss_dssp -----S
T ss_pred CCcccc
Confidence 998875
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00032 Score=58.18 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=57.5
Q ss_pred eecCccCHHHHHHhh----C-CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEe
Q 028547 29 WYQKYPSLAPLIKLY----V-PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKM 101 (207)
Q Consensus 29 ~~~~~~~~~~~l~~~----~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~ 101 (207)
+++......+.+-.+ . -+.++.++|+.||||.++..+++. ...|+|++++++++..|+++.... .|.+|+++
T Consensus 360 FFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~g 438 (534)
T KOG2187|consen 360 FFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVG 438 (534)
T ss_pred hhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeec
Confidence 455544444444322 2 233359999999999999998887 459999999999999999987743 79999999
Q ss_pred ccccc
Q 028547 102 DVRQM 106 (207)
Q Consensus 102 d~~~~ 106 (207)
-+.+.
T Consensus 439 qaE~~ 443 (534)
T KOG2187|consen 439 QAEDL 443 (534)
T ss_pred chhhc
Confidence 66654
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0006 Score=53.35 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=60.7
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccC-CCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ-TGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~fD~v~~~~~l~~~~ 127 (207)
+|+|+.||.|.++.-+.+.|+..+.++|+++.+++..+.++.. .+++.|+.+..+.. ...+|+++...+...++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~----~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS 76 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN----KLIEGDITKIDEKDFIPDIDLLTGGFPCQPFS 76 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC----CCccCccccCchhhcCCCCCEEEeCCCChhhh
Confidence 6899999999999988888887889999999999999998754 26677888874322 45799999998877664
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=5e-05 Score=53.55 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=71.8
Q ss_pred CcEEEEcCCCchhhHHH-HhcC-CCcEEEEeCCHHHHHHHHHHccCC-----CCceEEEeccccc-cccCCCCeeEEEeC
Q 028547 49 QRILIVGCGNSAFSEGM-VDDG-YEDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQM-DEFQTGSFDSVVDK 120 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l-~~~~-~~~v~~~D~s~~~i~~~~~~~~~~-----~~~~~~~~d~~~~-~~~~~~~fD~v~~~ 120 (207)
++|||+|.|--.++-.| +... ...|...|-+++.++..++..-.. .++.....+.... ......+||+|++.
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 49999999965554444 3332 258899999999988887753321 2232222222221 11245689999998
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
.++..- +....+.+.|...|+|.|..++........
T Consensus 111 DClFfd-------E~h~sLvdtIk~lL~p~g~Al~fsPRRg~s 146 (201)
T KOG3201|consen 111 DCLFFD-------EHHESLVDTIKSLLRPSGRALLFSPRRGQS 146 (201)
T ss_pred cchhHH-------HHHHHHHHHHHHHhCcccceeEecCcccch
Confidence 887754 788899999999999999977655433333
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00064 Score=52.71 Aligned_cols=110 Identities=19% Similarity=0.284 Sum_probs=82.1
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccc-cCCCCeeE
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDE-FQTGSFDS 116 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~-~~~~~fD~ 116 (207)
..++++||-+|.|.|......++... .++..+|++...++..++.++. .+++.+..+|...+.. ...++||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 34455999999999998887777643 6999999999999998887652 2678888998887632 34789999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+.... + . -++........+++-+.+.||+||+..+..
T Consensus 199 ii~dss-d-p-vgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSS-D-P-VGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecC-C-c-cchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 995310 0 0 111223577888999999999999998864
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00075 Score=51.34 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=55.5
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
+.+. +|+|||||.=-++.-...... ..|+++|++..+++.....+... .+..+...|+... .+....|+.+..=+
T Consensus 104 ~~p~-sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~--~~~~~~DlaLllK~ 180 (251)
T PF07091_consen 104 PPPD-SVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSD--PPKEPADLALLLKT 180 (251)
T ss_dssp ---S-EEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTS--HTTSEESEEEEET-
T ss_pred CCCc-hhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeecc--CCCCCcchhhHHHH
Confidence 3444 999999998777765555432 49999999999999988865522 5777888888876 26778999998777
Q ss_pred hhhh
Q 028547 123 LDSL 126 (207)
Q Consensus 123 l~~~ 126 (207)
++.+
T Consensus 181 lp~l 184 (251)
T PF07091_consen 181 LPCL 184 (251)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7766
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0029 Score=46.97 Aligned_cols=110 Identities=18% Similarity=0.103 Sum_probs=64.6
Q ss_pred CCCCcEEEEcCCCchhhHHHHhc--C-CCcEEEEeCCHHHHHHHHHHccCC-----------------------------
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDD--G-YEDVVNVDISSVVIEAMMKKYSNR----------------------------- 93 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~--~-~~~v~~~D~s~~~i~~~~~~~~~~----------------------------- 93 (207)
+.+-++.|.+||+|+++-.+.-. . ...|++.|+++++++.|++|+.-.
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 33349999999999988766443 1 258999999999999998765210
Q ss_pred ---------------CCceEEEeccccccc----cCCCCeeEEEeCcchhhhc--cCCCChhhHHHHHHHHHHhcCCCcE
Q 028547 94 ---------------PQLKYIKMDVRQMDE----FQTGSFDSVVDKGTLDSLL--CGSNSRQNATQMLKEVWRVLKDKGV 152 (207)
Q Consensus 94 ---------------~~~~~~~~d~~~~~~----~~~~~fD~v~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~L~pgG~ 152 (207)
......+.|+.+..+ -.....|+|+..-++..+. -++.+..-...++..++++|-++++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 124567778887421 1234469999887766554 1223556788899999999954555
Q ss_pred EEE
Q 028547 153 YIL 155 (207)
Q Consensus 153 ~~~ 155 (207)
+.+
T Consensus 210 V~v 212 (246)
T PF11599_consen 210 VAV 212 (246)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0022 Score=44.75 Aligned_cols=100 Identities=12% Similarity=0.209 Sum_probs=69.4
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc---CCCCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+.+|+|+|.|+.-...++.+...-+|+|+++-.+..++-..- -....+|...|+.+.+ .. .|..|+.++.-
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d-l~--dy~~vviFgae-- 148 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD-LR--DYRNVVIFGAE-- 148 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc-cc--ccceEEEeehH--
Confidence 4999999999999999999885588999999998888765432 2257889998988873 33 34444433221
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.-...+-.++..-+..+..++-.-|.-|
T Consensus 149 --------s~m~dLe~KL~~E~p~nt~vvacRFPLP 176 (199)
T KOG4058|consen 149 --------SVMPDLEDKLRTELPANTRVVACRFPLP 176 (199)
T ss_pred --------HHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence 2334555666777777777776554443
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00029 Score=58.44 Aligned_cols=121 Identities=16% Similarity=0.283 Sum_probs=78.7
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCH----HHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISS----VVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~----~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+.|+|..+|.|.++..|.+.. |..+...+ ..+.....+ .+.=.-.|..+.-+.-+.+||+|.+.+++.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydR-----GLIG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDR-----GLIGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhc-----ccchhccchhhccCCCCcchhheehhhhhh
Confidence 489999999999999998774 33333332 222222221 122233467764344568999999998877
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccccCCCCceEEEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVI 181 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (207)
.. ...-....++-++.|+|+|+|.+++-+...-....+.+.....|....+..
T Consensus 439 ~~----~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~ 491 (506)
T PF03141_consen 439 LY----KDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDT 491 (506)
T ss_pred hh----cccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEec
Confidence 65 223467889999999999999999976433333333345566788765544
|
; GO: 0008168 methyltransferase activity |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00063 Score=51.46 Aligned_cols=75 Identities=17% Similarity=0.149 Sum_probs=47.2
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHH---HHcc---CC-----CCceEEEeccccccccCCCCeeEEE
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMM---KKYS---NR-----PQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~---~~~~---~~-----~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
+|||.-+|-|..+..++..|+ +|+++|-++-+....+ ++.. .. .++++++.|..++...+..+||+|+
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred EEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 899999999999999998887 9999999996544333 2221 11 3689999999997556678999999
Q ss_pred eCcchhh
Q 028547 119 DKGTLDS 125 (207)
Q Consensus 119 ~~~~l~~ 125 (207)
...++.+
T Consensus 157 ~DPMFp~ 163 (234)
T PF04445_consen 157 FDPMFPE 163 (234)
T ss_dssp E--S---
T ss_pred ECCCCCC
Confidence 8877764
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0001 Score=56.79 Aligned_cols=104 Identities=17% Similarity=0.208 Sum_probs=63.9
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHH-c------c--CCCC---ceEEEe---ccccccccC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKK-Y------S--NRPQ---LKYIKM---DVRQMDEFQ 110 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~-~------~--~~~~---~~~~~~---d~~~~~~~~ 110 (207)
-..++|||+|||+|.....+...+...+...|.+.+.++..... . . ...+ ...... |..-.. ..
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~-t~ 193 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH-TE 193 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhh-cc
Confidence 34459999999999999988888755888888888776322110 0 0 0011 111122 221110 01
Q ss_pred CCCeeEEEeCcchhhhccCCCChhhHHHH-HHHHHHhcCCCcEEEEEE
Q 028547 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQM-LKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~-l~~~~~~L~pgG~~~~~~ 157 (207)
...||+|.+..++... .....+ .......++++|+++.+.
T Consensus 194 ~~~ydlIlsSetiy~~-------~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSI-------DSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccchhhhhhhhhhhCc-------chhhhhHhhhhhhcCCccchhhhhh
Confidence 1278999988887765 444444 556667788999988754
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0084 Score=45.46 Aligned_cols=101 Identities=16% Similarity=0.176 Sum_probs=59.5
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccccc-CCCCeeEEEeCcchh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEF-QTGSFDSVVDKGTLD 124 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~-~~~~fD~v~~~~~l~ 124 (207)
.+++||-+|=..-.-........+++|+.+|+++..++..++...+. -+++....|+.+..|- -.++||+++...+..
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT 123 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYT 123 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SS
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCC
Confidence 34599999865532222222233569999999999999998876532 3589999999996432 258999999886544
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCc-EEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKG-VYIL 155 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG-~~~~ 155 (207)
+ +....++.+....|+..| ..++
T Consensus 124 -~-------~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 124 -P-------EGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp -H-------HHHHHHHHHHHHTB-STT-EEEE
T ss_pred -H-------HHHHHHHHHHHHHhCCCCceEEE
Confidence 3 788999999999998866 4444
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0022 Score=49.02 Aligned_cols=105 Identities=14% Similarity=0.088 Sum_probs=69.5
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-------CC-CCceEEEecccccc--ccCCCC-eeEE
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------NR-PQLKYIKMDVRQMD--EFQTGS-FDSV 117 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-------~~-~~~~~~~~d~~~~~--~~~~~~-fD~v 117 (207)
..|||+|+|+|.-+..++.....+|...|.... +...+.+.. .. ..+.+...+..+.. .+.... +|+|
T Consensus 88 ~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 88 INVLELGSGTGLVGILAALLLGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred eeEEEecCCccHHHHHHHHHhcceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 479999999998888777754448888886543 333322211 10 24555555554431 122334 9999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
++..++... .....++..++..|..+|+.++.+.-.+
T Consensus 167 lasDvvy~~-------~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 167 LASDVVYEE-------ESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEeeeeecC-------CcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 999888865 6778888889999999997777664444
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0015 Score=52.57 Aligned_cols=113 Identities=17% Similarity=0.056 Sum_probs=63.7
Q ss_pred CcEEEEcCCCchhhHHHHhc------------C----C-CcEEEEeCCH-HHHHH------HHHHccCCCCc--eEEEec
Q 028547 49 QRILIVGCGNSAFSEGMVDD------------G----Y-EDVVNVDISS-VVIEA------MMKKYSNRPQL--KYIKMD 102 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~------------~----~-~~v~~~D~s~-~~i~~------~~~~~~~~~~~--~~~~~d 102 (207)
-+|+|+||.+|..+..+... + + -+|+--|.-. +.-.. ..+......++ .-+.+.
T Consensus 18 ~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpgS 97 (334)
T PF03492_consen 18 FRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPGS 97 (334)
T ss_dssp EEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES-
T ss_pred eEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCch
Confidence 49999999999888766552 1 0 1666667533 21111 11111111222 223355
Q ss_pred cccccccCCCCeeEEEeCcchhhhccCC---CC-----------------------------hhhHHHHHHHHHHhcCCC
Q 028547 103 VRQMDEFQTGSFDSVVDKGTLDSLLCGS---NS-----------------------------RQNATQMLKEVWRVLKDK 150 (207)
Q Consensus 103 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~---~~-----------------------------~~~~~~~l~~~~~~L~pg 150 (207)
+.+-. +|.++.|++++...+||+...+ .+ ..|...+|+.-++-|+||
T Consensus 98 Fy~rL-fP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~G 176 (334)
T PF03492_consen 98 FYGRL-FPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPG 176 (334)
T ss_dssp TTS---S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred hhhcc-CCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 55543 7999999999999999986322 11 136777888889999999
Q ss_pred cEEEEEEeCCcc
Q 028547 151 GVYILVTYGAPI 162 (207)
Q Consensus 151 G~~~~~~~~~~~ 162 (207)
|.+++...+.+.
T Consensus 177 G~mvl~~~gr~~ 188 (334)
T PF03492_consen 177 GRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEE-ST
T ss_pred cEEEEEEeeccc
Confidence 999998876655
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00013 Score=51.10 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=45.9
Q ss_pred ccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 102 DVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 102 d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++....+|.+++.|+|++.+++.|+ ..+.-..+++.+++.|||||.+-++....
T Consensus 36 ~As~e~~F~dns~d~iyaeHvlEHl-----t~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 36 RASNESMFEDNSVDAIYAEHVLEHL-----TYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred hhhhhccCCCcchHHHHHHHHHHHH-----hHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 4444447899999999999999999 66788899999999999999999987433
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0011 Score=49.52 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=70.8
Q ss_pred CcEEEEcCCCchhhHHHHhcCC----------CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc-------ccCC
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY----------EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-------EFQT 111 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~----------~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~ 111 (207)
++|+|+.+..|.+++.+.+.-+ ..+++||+.+ ....+.+..+++|+.+.. -|..
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~---------MaPI~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP---------MAPIEGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc---------CCccCceEEeecccCCHhHHHHHHHHhCC
Confidence 5999999999999999988521 1399999866 223357788889998852 2456
Q ss_pred CCeeEEEeCcchhhhccCCCCh----hhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSR----QNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~----~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
++.|+|+|.+..+--.-+.-++ .-+...|.-...+|+|||.|+.-.|.+.
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence 7899999987765321111111 1234445555689999999998655444
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0048 Score=49.46 Aligned_cols=138 Identities=13% Similarity=0.068 Sum_probs=83.1
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC---C--cEEEEeCCHHHHHHHHHHccCC--CCceEEEecccccc--------ccCCC
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY---E--DVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMD--------EFQTG 112 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~---~--~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~--------~~~~~ 112 (207)
+.+|||+++..|.=+..+.+..+ . .+++=|.++.-+.......... +++.+...|+.... +....
T Consensus 156 ~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~ 235 (375)
T KOG2198|consen 156 GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQL 235 (375)
T ss_pred CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhh
Confidence 34999999999988877777543 1 6888899987666665544322 34444444444331 12345
Q ss_pred CeeEEEeCcchhhhccCC----------------CChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccc-----cc---
Q 028547 113 SFDSVVDKGTLDSLLCGS----------------NSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLG-----ML--- 168 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~----------------~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~-----~~--- 168 (207)
.||.|++.-+..+=+... +=..-...++.+-.+.||+||.++.+|++-...+.. .+
T Consensus 236 ~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~~ 315 (375)
T KOG2198|consen 236 KFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQKV 315 (375)
T ss_pred hcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHHHh
Confidence 799999864332211000 011245678888899999999999999755433222 22
Q ss_pred cCCCCceEEEEEEeeee
Q 028547 169 RDSCSWNIKLHVIEKLV 185 (207)
Q Consensus 169 ~~~~~~~~~~~~~~~~~ 185 (207)
...+.|-...+..+...
T Consensus 316 ~~~~~lv~~~~~lp~l~ 332 (375)
T KOG2198|consen 316 GGAVELVDVSGDLPGLK 332 (375)
T ss_pred cCcccceeeccccccce
Confidence 44455555444444444
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0053 Score=50.06 Aligned_cols=53 Identities=23% Similarity=0.240 Sum_probs=41.3
Q ss_pred cCCCCeeEEEeCcchhhhccCCCC-------------------------------hhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 109 FQTGSFDSVVDKGTLDSLLCGSNS-------------------------------RQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 109 ~~~~~fD~v~~~~~l~~~~~~~~~-------------------------------~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|.++.+++++...+||++-.+.. ..|...+|+.-++-|.|||.+++..
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 789999999999999998622210 1256777777889999999999988
Q ss_pred eCCc
Q 028547 158 YGAP 161 (207)
Q Consensus 158 ~~~~ 161 (207)
.+.+
T Consensus 238 ~Gr~ 241 (386)
T PLN02668 238 LGRT 241 (386)
T ss_pred ecCC
Confidence 7654
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0051 Score=49.01 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=64.8
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccc-ccc-CCCCeeEEEeCc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQM-DEF-QTGSFDSVVDKG 121 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~-~~~-~~~~fD~v~~~~ 121 (207)
+++|||+|.|.|.-+..+-...+ ..++.++.|+..-+.......+. ........|+..- .++ ..+.|++++.
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~-- 191 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV-- 191 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh--
Confidence 35899999999876554444332 47788888885433332221110 0111111222211 112 2456777774
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
++.+ .....+..+...++.+..+++|||.++++..+.+-
T Consensus 192 -~~eL-l~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 192 -LDEL-LPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred -hhhh-ccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 4443 22234456667999999999999999999876663
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.011 Score=50.03 Aligned_cols=128 Identities=13% Similarity=0.111 Sum_probs=79.4
Q ss_pred ecCccCHHHHHHhhCC-CCCCcEEEEcCCCchhhHHHHhcC-----CCcEEEEeCCHHHHHHHHHHcc--CCC-CceEEE
Q 028547 30 YQKYPSLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDG-----YEDVVNVDISSVVIEAMMKKYS--NRP-QLKYIK 100 (207)
Q Consensus 30 ~~~~~~~~~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~-----~~~v~~~D~s~~~i~~~~~~~~--~~~-~~~~~~ 100 (207)
+...+.+..++...+. +...+|+|..||+|.+.....+.- ...++|.|+++.....++.+.. +.. ++....
T Consensus 168 fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~ 247 (489)
T COG0286 168 FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRH 247 (489)
T ss_pred cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccc
Confidence 3344445555444443 333499999999998877665531 1369999999999999888754 211 233444
Q ss_pred ecccccccc----CCCCeeEEEeCcchhhhccC------------------CCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 101 MDVRQMDEF----QTGSFDSVVDKGTLDSLLCG------------------SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 101 ~d~~~~~~~----~~~~fD~v~~~~~l~~~~~~------------------~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|-..-... ..+.||+|+++.++...... .........+++.+...|+|+|..-++.
T Consensus 248 ~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 248 GDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred cccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 433332112 34679999999888511111 1122234789999999999988555444
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0022 Score=52.39 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=72.5
Q ss_pred CcEEEEcCCCchhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccCC---C-CceEEEeccccccccCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNR---P-QLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~~---~-~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
.+|||.=+|+|.=++..+.. +..+|+.-|+++++++..++++.-+ . .+.+.+.|+..+.......||+|=.
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl--- 127 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL--- 127 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE---
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe---
Confidence 38999999999888777776 3369999999999999999987622 2 4778888998873336789999984
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+.+ -.+..+++.+.+.++.||.+.++.
T Consensus 128 -DPf-------GSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 -DPF-------GSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ---S-------S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCC-------CCccHhHHHHHHHhhcCCEEEEec
Confidence 333 445788999999999999999864
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0059 Score=46.16 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc--CCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--QTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~fD~v~~~~ 121 (207)
++..+||-+|+++|..-.+.... +. ..|+++|.|+..=.....-..+.+|+.-+.-|+.....+ .-.-.|+||+.-
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaDv 234 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFADV 234 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEeccC
Confidence 44459999999999877777664 33 489999999865444333333336888888898876322 233678887641
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
...+....+.-++...|++||.|++..
T Consensus 235 ---------aqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 235 ---------AQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred ---------CCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 123556666778889999999999865
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0064 Score=48.08 Aligned_cols=86 Identities=12% Similarity=0.218 Sum_probs=61.5
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccc----c
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMD----E 108 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~----~ 108 (207)
.+.+.++.+.++++..++|.-.|.|..+..+++.. ...++|+|-++.+++.+++++... .++.+++.++.++. .
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHH
Confidence 35667777766666699999999999999999863 269999999999999999988744 68999999988862 1
Q ss_pred c-CCCCeeEEEeC
Q 028547 109 F-QTGSFDSVVDK 120 (207)
Q Consensus 109 ~-~~~~fD~v~~~ 120 (207)
. ...++|.|+..
T Consensus 88 ~~~~~~~dgiL~D 100 (310)
T PF01795_consen 88 LNGINKVDGILFD 100 (310)
T ss_dssp TTTTS-EEEEEEE
T ss_pred ccCCCccCEEEEc
Confidence 2 33578888865
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0015 Score=46.15 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=69.6
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHH-HHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAM-MKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
++++-+|+..-..-....+.|.+++..+|.++--++.- +.+. ..+...|+..-.....++||++.+...++|..
T Consensus 3 ~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~-----ssi~p~df~~~~~~y~~~fD~~as~~siEh~G 77 (177)
T PF03269_consen 3 KSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL-----SSILPVDFAKNWQKYAGSFDFAASFSSIEHFG 77 (177)
T ss_pred ceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc-----ccccHHHHHHHHHHhhccchhhheechhcccc
Confidence 36788888766666666677777899999876322211 1111 12333344432222457899999999998876
Q ss_pred cCC----CChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 128 CGS----NSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 128 ~~~----~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
-+. -++......+.++.++|||||.+++....+.
T Consensus 78 LGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 78 LGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred ccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 432 2233556677888999999999999875443
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0078 Score=40.93 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=40.7
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
.++|+|+|++-|.-++.++-.|.+.|+++++++...+..+++...
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence 349999999999999999999999999999999999999887653
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0059 Score=44.69 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=68.9
Q ss_pred CCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHH----------HHHHHHccCCCCceEEEeccccccccCCCC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVI----------EAMMKKYSNRPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i----------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (207)
+++.+|+|+=.|.|.++.-++.. +. ..|+++-..+... ..+++. ...|...+-.+...+ . +.+.
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~--~~aN~e~~~~~~~A~-~-~pq~ 122 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP--VYANVEVIGKPLVAL-G-APQK 122 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh--hhhhhhhhCCccccc-C-CCCc
Confidence 34459999999999999988875 22 3677664433211 111111 113555555555555 2 5566
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.|+++.....|-+....-...........+++.|||||++.+.+.
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 777776555544432222346788899999999999999999874
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.00046 Score=45.60 Aligned_cols=44 Identities=11% Similarity=0.291 Sum_probs=34.1
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.||+|+|..+.-|+ .-+.+.+.+..+++++++.|+|||.|++.-
T Consensus 1 ~yDvilclSVtkWI-HLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWI-HLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHH-HHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEE-EecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999998888776 223345678999999999999999999854
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.017 Score=46.27 Aligned_cols=94 Identities=17% Similarity=0.252 Sum_probs=66.3
Q ss_pred CCCcEEEEcCC-CchhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec-cccccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCG-NSAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-VRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G-~G~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~fD~v~~~~~l 123 (207)
++.+|+-.|+| .|.++..+++ .+ .+|+++|.+++-.+.+++.-.. .++... ...... -.+.||+|+..-.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd----~~i~~~~~~~~~~-~~~~~d~ii~tv~- 238 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD----HVINSSDSDALEA-VKEIADAIIDTVG- 238 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc----EEEEcCCchhhHH-hHhhCcEEEECCC-
Confidence 33488888886 4688888888 56 5999999999999999886433 344432 111111 1234999997532
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
...+....+.|+++|.++++....
T Consensus 239 -------------~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 239 -------------PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred -------------hhhHHHHHHHHhcCCEEEEECCCC
Confidence 456778899999999999988653
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0033 Score=51.48 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=46.7
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQM 106 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~ 106 (207)
.|||||.|+|.++...+..|...+++++.-..|.+.|++...+. .++.++.-...+.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 78999999999999999998779999999999999998876543 4566666555554
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.016 Score=46.96 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=66.9
Q ss_pred cEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe-ccc-ccccc-CCCCeeEEEeCcchh
Q 028547 50 RILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DVR-QMDEF-QTGSFDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~-d~~-~~~~~-~~~~fD~v~~~~~l~ 124 (207)
+|+-+|||+ |.++..+++. |.++|+.+|.++.-++.|++..... .+..... +.. ..... ....+|+++-..-
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-VVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-EeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 899999998 8887777665 5579999999999999999865421 0000001 111 11111 2247999996422
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
....+..+.+.++|+|.+.+.......
T Consensus 248 -----------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -----------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred -----------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 245788999999999999988765443
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0092 Score=47.60 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=57.0
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc--cCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~v~~~~~l~~~~ 127 (207)
+++|+-||.|.+..-+.+.|+..+.++|+++.+.+..+.++. .....|+.+... ++. .+|+++...+...++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS 75 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFS 75 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHHHHH-T-SEEEEE---TTTS
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----ccccccccccccccccc-cceEEEeccCCceEe
Confidence 689999999999999999998789999999999999999884 788889998742 343 599999988877764
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.019 Score=46.19 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=78.4
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCee
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD 115 (207)
.+..+.+..+.+|+|.=+|+|.=++.++.... .+++.-|+++++++.+++|+.-+ .+...++.|+..+.-.....||
T Consensus 44 ~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd 123 (380)
T COG1867 44 VLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFD 123 (380)
T ss_pred HHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCcc
Confidence 33344333255999999999988888877754 38999999999999999998743 4666777788876322347889
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
+|=. +.+ -.+..+++.+.+.++.+|++-++
T Consensus 124 ~IDi----DPF-------GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 124 VIDI----DPF-------GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred EEec----CCC-------CCCchHHHHHHHHhhcCCEEEEE
Confidence 8863 322 34466788888888999998874
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0025 Score=41.91 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=26.7
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCH
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISS 80 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~ 80 (207)
..+|+|||+|.+.--+...|+ .-.|+|.-.
T Consensus 61 ~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 61 GFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred ceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 899999999999999999998 888988644
|
; GO: 0008168 methyltransferase activity |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.011 Score=47.52 Aligned_cols=114 Identities=13% Similarity=0.161 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC---------CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeE
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG---------YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~---------~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
+.+..++|+|.|.|.++..++... ..++..+|+|++..+.-++++.... -.+......+. .+..-.-+
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~-~~~~~~~~~e~--~p~~~~~i 152 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE-DLIRWVEWVED--LPKKFPGI 152 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc-cchhHHHHHHh--ccccCceE
Confidence 334489999999999998887641 3589999999998888777776432 11112222221 22222345
Q ss_pred EEeCcchhhhccCC------------------------------------CC-------------hhhHHHHHHHHHHhc
Q 028547 117 VVDKGTLDSLLCGS------------------------------------NS-------------RQNATQMLKEVWRVL 147 (207)
Q Consensus 117 v~~~~~l~~~~~~~------------------------------------~~-------------~~~~~~~l~~~~~~L 147 (207)
|++|..++++.+.. +. ......+++.++..|
T Consensus 153 ~~~NElfDAlPv~q~~~~~~~~~Er~~~~~~~~~~~~~~~~~~~~~~~ll~l~~~~~~~g~~~E~~~a~~~~l~~ia~~L 232 (370)
T COG1565 153 VVSNELFDALPVEQFIRTKGLFVERVVVLDAEGRLVFSHAINELIDEALLPLDAPEAEDGYILEVSPAREALLKAIAERL 232 (370)
T ss_pred EEechhhccccceeEeccCceEEEEeeccCcccceeeccccccchhhhccCcccccccCCceeeeCHHHHHHHHHHHHHH
Confidence 55555555443221 00 013557888888888
Q ss_pred CCCcEEEEEEeCCccc
Q 028547 148 KDKGVYILVTYGAPIY 163 (207)
Q Consensus 148 ~pgG~~~~~~~~~~~~ 163 (207)
+. |++++.+|+.+..
T Consensus 233 ~~-G~~l~iDYG~~~~ 247 (370)
T COG1565 233 ER-GVFLFIDYGYPAE 247 (370)
T ss_pred hh-CeEEEEecCCccc
Confidence 88 8888888877533
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.019 Score=42.69 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=54.1
Q ss_pred CCcEEEEcCCCchhhHHHHhc-----CCCcEEEEeCCHHHHHH-HHHHccCCCCceEEEecccccccc-------CCCCe
Q 028547 48 HQRILIVGCGNSAFSEGMVDD-----GYEDVVNVDISSVVIEA-MMKKYSNRPQLKYIKMDVRQMDEF-------QTGSF 114 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~-----~~~~v~~~D~s~~~i~~-~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~f 114 (207)
+..|+|+|.-.|.-+.+++.. +.++|+|+|++-..... +.+..+-.++++++++|..+.... .....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 349999999988766666542 23599999995433221 111111226899999998875211 12234
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+|+... +| ..+.....|+....++++|+.+++.+
T Consensus 113 vlVilDs--~H------~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 113 VLVILDS--SH------THEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEEESS------------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred eEEEECC--Cc------cHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 4666432 11 12556778888999999999998854
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.023 Score=44.94 Aligned_cols=105 Identities=17% Similarity=0.298 Sum_probs=70.2
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE-----eccccc--cccCCCCeeEEEe
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-----MDVRQM--DEFQTGSFDSVVD 119 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~-----~d~~~~--~~~~~~~fD~v~~ 119 (207)
.+||-+|+|+ |.++...++. |.++|..+|+++..++.|++ +... .+.... .++.+. ..+....+|+.+.
T Consensus 171 s~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~-~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~d 248 (354)
T KOG0024|consen 171 SKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT-VTDPSSHKSSPQELAELVEKALGKKQPDVTFD 248 (354)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe-EEeeccccccHHHHHHHHHhhccccCCCeEEE
Confidence 4999999998 6666666664 56799999999999999998 4321 111111 111111 1123345898886
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccc
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML 168 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~ 168 (207)
.. .....++.....++.+|.++++.++.+....+++
T Consensus 249 Cs-------------G~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~ 284 (354)
T KOG0024|consen 249 CS-------------GAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPII 284 (354)
T ss_pred cc-------------CchHHHHHHHHHhccCCEEEEeccCCCccccChh
Confidence 53 3345677778999999998888887776655544
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.014 Score=46.57 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=57.5
Q ss_pred EEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 51 ILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 51 vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
|+|+-||.|.++.-+.+.|+.-+.++|+++.+.+..+.+++. .+...|+.+..+.....+|+++...+...++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~----~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN----KVPFGDITKISPSDIPDFDILLGGFPCQPFS 73 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC----CCCccChhhhhhhhCCCcCEEEecCCCcccc
Confidence 689999999999999888885677899999999999988754 4456788876422234689999987777664
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.011 Score=44.38 Aligned_cols=51 Identities=18% Similarity=0.147 Sum_probs=38.9
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK 88 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~ 88 (207)
+..+++....++. .|||.-||+|..+....+.+- +.+|+|+++...+.|++
T Consensus 181 ~~~lI~~~t~~gd-iVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 181 IERLIKASTNPGD-IVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHS-TT--EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHhhhccce-eeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 4455555555555 999999999999988888865 89999999999988864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.014 Score=45.89 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=42.3
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~ 91 (207)
.++...-.+.. .|||.-||+|..+....+.+- +++|+|++++.++.+++++.
T Consensus 200 rlI~~~S~~GD-~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 200 RIILASSNPGD-IVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHhCCCCC-EEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHH
Confidence 34444434444 999999999999988888765 99999999999999999975
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.073 Score=45.27 Aligned_cols=99 Identities=16% Similarity=0.283 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc-----------cc------
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-----------MD------ 107 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~-----------~~------ 107 (207)
.+.+|+-+|||. |..+...++. |. .|+++|.+++.++.+++. . .++...|..+ ..
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl-G----A~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM-G----AEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc-C----CeEEEeccccccccccchhhhcchhHHHH
Confidence 345999999997 6677666665 55 899999999999988773 2 2332222211 00
Q ss_pred ---ccC--CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 108 ---EFQ--TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 108 ---~~~--~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.+. ...+|+|+....... ...+..+.+++.+.+||||+++.+..
T Consensus 238 ~~~~~~~~~~gaDVVIetag~pg-------~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALIPG-------KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECCCCCc-------ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 001 146899997532211 12233335999999999999887765
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.028 Score=42.75 Aligned_cols=53 Identities=13% Similarity=0.216 Sum_probs=42.5
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
.+++.+..+.. .|||.-||+|..+....+.+- +++|+|+++...+.+.+++..
T Consensus 155 ~~i~~~s~~g~-~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 155 PLIESFTHPNA-IVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHhCCCCC-EEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 34444444444 999999999999988888766 999999999999999888653
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.016 Score=51.16 Aligned_cols=103 Identities=10% Similarity=0.038 Sum_probs=65.5
Q ss_pred CcEEEEcCCCchhhHHHHhc-------C----C--CcEEEEeCCH---HHHHHHHHHcc------------------CC-
Q 028547 49 QRILIVGCGNSAFSEGMVDD-------G----Y--EDVVNVDISS---VVIEAMMKKYS------------------NR- 93 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~-------~----~--~~v~~~D~s~---~~i~~~~~~~~------------------~~- 93 (207)
-+|+|+|.|+|.......+. . . -+++++|..+ +.+..+.+.++ ..
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 39999999999765544321 1 1 2788999643 32322221110 00
Q ss_pred --------CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 94 --------PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 94 --------~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
-.+.+..+|+.+..+.....+|+++ ++.+....+++--...+++.++++++|||.+.-
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~----lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWF----LDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhccccccEEE----eCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 1344666787765332235699999 555555556667789999999999999999874
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.063 Score=43.26 Aligned_cols=93 Identities=19% Similarity=0.344 Sum_probs=58.5
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE---eccccccccCCCCeeEEEeCcc
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK---MDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
+.+||-.|||. |.++..+++. |..+++++|.+++.++.+++. ... .++. .++.+.. ...+.+|+|+..-
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~---~vi~~~~~~~~~~~-~~~g~~D~vid~~- 243 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GAD---KLVNPQNDDLDHYK-AEKGYFDVSFEVS- 243 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCc---EEecCCcccHHHHh-ccCCCCCEEEECC-
Confidence 34888888864 6677777665 444799999999988888763 211 1111 1222221 1123589888531
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....++...+.|+++|.++....
T Consensus 244 ------------G~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 ------------GHPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ------------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 112356778889999999988764
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.024 Score=44.62 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=44.2
Q ss_pred CCceEEEeccccc-cccCCCCeeEEEeCcchhhhc-c-C-CC--Ch----hhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 94 PQLKYIKMDVRQM-DEFQTGSFDSVVDKGTLDSLL-C-G-SN--SR----QNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 94 ~~~~~~~~d~~~~-~~~~~~~fD~v~~~~~l~~~~-~-~-~~--~~----~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+.+++++|..+. ..+++++||+|+++.++.--. . . .. .. ......+..+.++|+|||.+++..
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3567889999985 335778999999988764210 0 0 00 00 224578899999999999998853
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0099 Score=48.53 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=52.8
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----CCceEEEeccccc
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVRQM 106 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d~~~~ 106 (207)
+.+..+.+.+. .|.|+-||-|-++.-+++.++ .|++-|.++++++..+.+++-+ .++....+|+..+
T Consensus 241 erlsg~fk~ge-vv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 241 ERLSGLFKPGE-VVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred HHHhhccCCcc-hhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 33444434444 999999999999999999986 9999999999999999988732 3477777777664
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.05 Score=42.02 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=34.1
Q ss_pred CcEEEEcCCCchhhHHHHhcC---------CCcEEEEeCCHHHHHHHHHHccC
Q 028547 49 QRILIVGCGNSAFSEGMVDDG---------YEDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~---------~~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
-+|+|+|+|+|.++..++..- ..+++.+|+|+.+.+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 499999999999998887731 13899999999888888877764
|
; PDB: 4F3N_A 1ZKD_B. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.0052 Score=47.88 Aligned_cols=90 Identities=19% Similarity=0.118 Sum_probs=64.3
Q ss_pred CcEEEEcCCCchhhH-HHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSE-GMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~-~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
..|+|+=+|-|+++. ++...|.+.|+++|.++.+++..++++... .+.....+|-+.. .+....|.|.......
T Consensus 196 eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~--~~~~~AdrVnLGLlPS 273 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP--KPRLRADRVNLGLLPS 273 (351)
T ss_pred chhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc--Cccccchheeeccccc
Confidence 389999999999999 888888889999999999999999887643 2344455555554 3567788888543222
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCc
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKG 151 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG 151 (207)
++..+. .+.++|+|.|
T Consensus 274 -------se~~W~----~A~k~Lk~eg 289 (351)
T KOG1227|consen 274 -------SEQGWP----TAIKALKPEG 289 (351)
T ss_pred -------cccchH----HHHHHhhhcC
Confidence 223333 3467777743
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.17 Score=42.64 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=58.6
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc----------------CCCC
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF----------------QTGS 113 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~----------------~~~~ 113 (207)
+++|+-||.|.+..-+...|+..+.++|+++.+.+.-+.++...+....+..|+.+.... ....
T Consensus 90 ~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~p~ 169 (467)
T PRK10458 90 RFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHIPD 169 (467)
T ss_pred eEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccCCC
Confidence 999999999999999888888778899999999999888874333345555666665210 1125
Q ss_pred eeEEEeCcchhhhc
Q 028547 114 FDSVVDKGTLDSLL 127 (207)
Q Consensus 114 fD~v~~~~~l~~~~ 127 (207)
.|+++...+...++
T Consensus 170 ~DvL~gGpPCQ~FS 183 (467)
T PRK10458 170 HDVLLAGFPCQPFS 183 (467)
T ss_pred CCEEEEcCCCCccc
Confidence 79999887777664
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.16 Score=34.67 Aligned_cols=94 Identities=16% Similarity=0.205 Sum_probs=52.8
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
... +|+|+|-|. -..+..+.+.|+ .|+++|+.+. +.+ ..+.++..|+.+....--...|+|.+..+-
T Consensus 13 ~~~-kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~-------~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiRPP- 80 (127)
T PF03686_consen 13 NYG-KIVEVGIGFNPEVAKKLKERGF-DVIATDINPR-------KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIRPP- 80 (127)
T ss_dssp -SS-EEEEET-TT--HHHHHHHHHS--EEEEE-SS-S-------------STTEE---SSS--HHHHTTEEEEEEES---
T ss_pred CCC-cEEEECcCCCHHHHHHHHHcCC-cEEEEECccc-------ccc--cCcceeeecccCCCHHHhcCCcEEEEeCCC-
Confidence 344 999999987 356667777787 9999999986 111 368899999999742123478999975432
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
.+....+.++++.+. .-+++..++.+.
T Consensus 81 ---------~El~~~il~lA~~v~--adlii~pL~~e~ 107 (127)
T PF03686_consen 81 ---------PELQPPILELAKKVG--ADLIIRPLGGES 107 (127)
T ss_dssp ---------TTSHHHHHHHHHHHT---EEEEE-BTTB-
T ss_pred ---------hHHhHHHHHHHHHhC--CCEEEECCCCCC
Confidence 344555666665544 567777776654
|
; PDB: 2K4M_A. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.18 Score=40.56 Aligned_cols=75 Identities=15% Similarity=0.268 Sum_probs=60.6
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccC--CCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ--TGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~fD~v~~~~~l~~~~ 127 (207)
+++|+-||.|.+..-+...|+.-+.++|+++.+++.-+.+++. ..+...|+.+..... ...+|+++...+.+.++
T Consensus 5 ~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~---~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS 81 (328)
T COG0270 5 KVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH---GDIILGDIKELDGEALRKSDVDVLIGGPPCQDFS 81 (328)
T ss_pred eEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC---CceeechHhhcChhhccccCCCEEEeCCCCcchh
Confidence 8999999999999888888887888999999999999988753 466777777653222 11789999998887775
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.65 Score=36.10 Aligned_cols=117 Identities=12% Similarity=0.090 Sum_probs=72.6
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHH-HHHHHHHHccC-----CCCceEEEecccccc--
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSV-VIEAMMKKYSN-----RPQLKYIKMDVRQMD-- 107 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~-~i~~~~~~~~~-----~~~~~~~~~d~~~~~-- 107 (207)
+.+.+...+......|+.+|||-=.-...+... . .+..+|++.. .++.-++.+.. ..+.+++..|+.+.+
T Consensus 70 ~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~-~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~ 147 (260)
T TIGR00027 70 FDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWP-D-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPA 147 (260)
T ss_pred HHHHHHHHHhcCCcEEEEeCCccccHHHhcCCC-C-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHH
Confidence 334444554444458999999874444444322 2 3455555444 44444444432 257888888886321
Q ss_pred -----ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 108 -----EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 108 -----~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
.+....--++++-+++.++ +.+....+++.+.+...||+.+++....
T Consensus 148 ~L~~~gfd~~~ptl~i~EGvl~YL-----~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 148 ALAAAGFDPTAPTAWLWEGLLMYL-----TEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred HHHhCCCCCCCCeeeeecchhhcC-----CHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 1112234478888888888 7788999999999998898888876543
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.065 Score=45.18 Aligned_cols=101 Identities=17% Similarity=0.266 Sum_probs=73.1
Q ss_pred cEEEEcCCCchhhHHHHh------cCCCcEEEEeCCHHHHHHHHHHcc-CC-CCceEEEeccccccccCCCCeeEEEeCc
Q 028547 50 RILIVGCGNSAFSEGMVD------DGYEDVVNVDISSVVIEAMMKKYS-NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~------~~~~~v~~~D~s~~~i~~~~~~~~-~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
+|.-+|+|-|-+.....+ +.. +++++|.+|.++...+.+-- .. .+++++..|++.+. -+.++.|++++-
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkV-klyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~-ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKV-KLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWN-APREQADIIVSE- 446 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCce-EEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccC-CchhhccchHHH-
Confidence 778899999966543333 223 89999999999988877422 22 57899999999984 235789998864
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+..++ +.+--+..|..+.+.|||+|+.+=..
T Consensus 447 LLGSFG----DNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 447 LLGSFG----DNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred hhcccc----CccCCHHHHHHHHhhcCCCceEccch
Confidence 344331 23455778899999999999987643
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.082 Score=39.95 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=49.3
Q ss_pred cEEEEcCCCchhhHHHHh--cCCCcEEEEeCCHHHHHHHHHHccCCC----CceEEEe-ccccc---cccCCCCeeEEEe
Q 028547 50 RILIVGCGNSAFSEGMVD--DGYEDVVNVDISSVVIEAMMKKYSNRP----QLKYIKM-DVRQM---DEFQTGSFDSVVD 119 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~--~~~~~v~~~D~s~~~i~~~~~~~~~~~----~~~~~~~-d~~~~---~~~~~~~fD~v~~ 119 (207)
++||||.|.-..-..+.. .|+ .++|.|+++..++.|+.....++ .++.... |-... .--.++.||+++|
T Consensus 81 ~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlC 159 (292)
T COG3129 81 RILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLC 159 (292)
T ss_pred EEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEec
Confidence 889998876544333333 356 99999999999999998766432 2343332 11111 0012678999999
Q ss_pred Ccchhh
Q 028547 120 KGTLDS 125 (207)
Q Consensus 120 ~~~l~~ 125 (207)
+.++|.
T Consensus 160 NPPFh~ 165 (292)
T COG3129 160 NPPFHD 165 (292)
T ss_pred CCCcch
Confidence 999875
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.096 Score=41.38 Aligned_cols=109 Identities=19% Similarity=0.204 Sum_probs=70.3
Q ss_pred CcEEEEcCCCchhhHHHHhcC-------C--------------CcEEEEeCCHH--HHHHHHHHccCC------------
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-------Y--------------EDVVNVDISSV--VIEAMMKKYSNR------------ 93 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-------~--------------~~v~~~D~s~~--~i~~~~~~~~~~------------ 93 (207)
.+||-||.|.|.-...++... . -.++.+|+.+- .+......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 499999999985554443321 0 17999998763 444443332211
Q ss_pred -------CCceEEEecccccccc------CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 94 -------PQLKYIKMDVRQMDEF------QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 94 -------~~~~~~~~d~~~~~~~------~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
-++.|.+.|+..+..- .....++|-...++.-+++. +.....++|.++-..++||..+++++..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~--s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFST--SISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhc--ChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 2578999999987320 11235666655555544222 2567889999999999999999998743
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.023 Score=47.35 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=73.0
Q ss_pred CcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccc---ccCCCCeeEEEeC
Q 028547 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMD---EFQTGSFDSVVDK 120 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~---~~~~~~fD~v~~~ 120 (207)
.+|||.=|++|.-++..++.- ..++++-|.+++++...+++..-. ..+.-...|+.... +.....||+|=.
T Consensus 111 l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDL- 189 (525)
T KOG1253|consen 111 LRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDL- 189 (525)
T ss_pred chHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEec-
Confidence 399999999998888887763 369999999999999999887633 23455556666641 223478999983
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
+.. -....+|+.+.+.++.||++.+.
T Consensus 190 ---DPy-------Gs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 190 ---DPY-------GSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ---CCC-------CCccHHHHHHHHHhhcCCEEEEE
Confidence 333 34467888889999999999885
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.076 Score=40.37 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=42.1
Q ss_pred ceEEEeccccc-cccCCCCeeEEEeCcchhh-hcc--C-----CCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 96 LKYIKMDVRQM-DEFQTGSFDSVVDKGTLDS-LLC--G-----SNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 96 ~~~~~~d~~~~-~~~~~~~fD~v~~~~~l~~-~~~--~-----~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.+++++|..+. ..++++++|+|+...++.- ... + ....+.....+.+++++|||||.+++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 35778888774 3468899999999977741 000 0 011134568889999999999988763
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.64 Score=33.36 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=65.5
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccC---CCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ---TGS 113 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~ 113 (207)
...+........ +|+-|||=+-.....-......+++.+|++...-. +. .+ .|..-|..+...++ .++
T Consensus 16 ~~~l~~~~~~~~-~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~-----~~--~~-~F~fyD~~~p~~~~~~l~~~ 86 (162)
T PF10237_consen 16 ARELLDGALDDT-RIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQ-----FG--GD-EFVFYDYNEPEELPEELKGK 86 (162)
T ss_pred HHHHHHhcCCCC-EEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHh-----cC--Cc-ceEECCCCChhhhhhhcCCC
Confidence 333333333344 99999987744333221111248999999885322 11 12 56777777653222 579
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
||+|++..++- .++-.....+.+..++++++.+++.+
T Consensus 87 ~d~vv~DPPFl-------~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 87 FDVVVIDPPFL-------SEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred ceEEEECCCCC-------CHHHHHHHHHHHHHHhCccceEEEec
Confidence 99999998873 34566677777777778888888777
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.94 Score=30.37 Aligned_cols=90 Identities=13% Similarity=0.219 Sum_probs=59.2
Q ss_pred cEEEEcCCCc-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhcc
Q 028547 50 RILIVGCGNS-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (207)
Q Consensus 50 ~vLdiG~G~G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~ 128 (207)
+|+|+|-|-= ..+..+++.|+ .++++|+.+. +.+ ..+++...|+.+..----...|+|.+--
T Consensus 16 kVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR------- 78 (129)
T COG1255 16 KVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP--EGLRFVVDDITNPNISIYEGADLIYSIR------- 78 (129)
T ss_pred cEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc--ccceEEEccCCCccHHHhhCccceeecC-------
Confidence 9999998863 55667788887 9999999885 222 4789999999997311234678888632
Q ss_pred CCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+..+....+-.+++.++ ..+++....+.
T Consensus 79 ---pppEl~~~ildva~aVg--a~l~I~pL~Ge 106 (129)
T COG1255 79 ---PPPELQSAILDVAKAVG--APLYIKPLTGE 106 (129)
T ss_pred ---CCHHHHHHHHHHHHhhC--CCEEEEecCCC
Confidence 22444555555555443 45666554443
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.22 Score=40.90 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=54.8
Q ss_pred CCceEEEecccccc-ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 94 PQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 94 ~~~~~~~~d~~~~~-~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
.++++...++.+.. ..+.+++|.++....++|+ +.......++++.+.++|||.+++-+...+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm-----~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWM-----DPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhC-----CHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 57899999999863 2468999999999999998 6789999999999999999999998865543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.043 Score=37.54 Aligned_cols=68 Identities=24% Similarity=0.212 Sum_probs=43.5
Q ss_pred CceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccc
Q 028547 95 QLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML 168 (207)
Q Consensus 95 ~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~ 168 (207)
.+.+..+|+.+..+.-...||+|+ ++.++...+++--...+++.++++++|||.+. +|+......+-+
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~y----lDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~--Tys~a~~Vr~~L 99 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWY----LDGFSPAKNPELWSEELFKKLARLSKPGGTLA--TYSSAGAVRRAL 99 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEE----E-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEE--ES--BHHHHHHH
T ss_pred EEEEEEcHHHHHHHhCcccCCEEE----ecCCCCcCCcccCCHHHHHHHHHHhCCCcEEE--EeechHHHHHHH
Confidence 467778888775333347899999 55554555666677899999999999999776 555544444433
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.4 Score=39.33 Aligned_cols=108 Identities=15% Similarity=0.249 Sum_probs=63.3
Q ss_pred CcEEEEcCCC-chhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEec-ccc-cccc-CCCCeeEEEeCcch
Q 028547 49 QRILIVGCGN-SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-VRQ-MDEF-QTGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d-~~~-~~~~-~~~~fD~v~~~~~l 123 (207)
.+||..|||. |..+..+++... ..+++++.+++..+.+++.... ..+.....+ +.+ .... ....+|+|+..-.-
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~ 264 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-ETINFEEVDDVVEALRELTGGRGPDVCIDAVGM 264 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-EEEcCCcchHHHHHHHHHcCCCCCCEEEECCCC
Confidence 4899999987 888888877643 3699999999988888875321 111111111 111 1111 23468998864210
Q ss_pred h-------hhccC-CCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 D-------SLLCG-SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~-------~~~~~-~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. .+.-+ ..+..+....++.+.+.|+++|.++...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 265 EAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred cccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 0 00000 0011223557888899999999998765
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.68 Score=36.72 Aligned_cols=85 Identities=14% Similarity=0.211 Sum_probs=54.3
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+||-+|||. |.++..+++. |...+.++|.+++.++.+... .+ .|..+. ....+|+|+..-
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~-------~~--i~~~~~---~~~g~Dvvid~~----- 208 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY-------EV--LDPEKD---PRRDYRAIYDAS----- 208 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc-------cc--cChhhc---cCCCCCEEEECC-----
Confidence 4888889875 7777777765 554577888888766655432 11 111111 234689888541
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.-...++.+.+.|+++|.+++...
T Consensus 209 --------G~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 209 --------GDPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred --------CCHHHHHHHHHhhhcCcEEEEEee
Confidence 113456778899999999987664
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.08 Score=42.32 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHH-------HHHccC---C-CCceEEEeccccccccCCCCee
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAM-------MKKYSN---R-PQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~-------~~~~~~---~-~~~~~~~~d~~~~~~~~~~~fD 115 (207)
++..|+|.--|||.++...+..|. -|+|.||+-.++... +.+++. . .-+.++.+|..+..-..+..||
T Consensus 208 pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fD 286 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFD 286 (421)
T ss_pred CCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceee
Confidence 344999999999999999999887 999999998887732 223321 1 2467788888886213567899
Q ss_pred EEEeCcchhhhccCC--------C--------------C----hhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGS--------N--------------S----RQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~--------~--------------~----~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|+|..++.--.... . . ..-...++.-.++.|..||.+++..
T Consensus 287 aIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 287 AIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred EEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 999987663110000 0 0 0124456666789999999988743
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=93.53 E-value=1.4 Score=34.98 Aligned_cols=92 Identities=16% Similarity=0.227 Sum_probs=57.3
Q ss_pred CcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc-----cccCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-----DEFQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~fD~v~~~~~ 122 (207)
.+||..|+|. |..+..+++....++++++.+++..+.+++. . +..+..+-... .......+|+|+...
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~-g----~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~- 240 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL-G----ADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV- 240 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh-C----CCEEEcCCCcCHHHHHHHhcCCCceEEEECC-
Confidence 3888888763 7777777775333799999999888877553 1 11111111100 012345789888531
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....++.+.+.|+++|.++....
T Consensus 241 ------------g~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 241 ------------GTQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ------------CCHHHHHHHHHHhhcCCEEEEECC
Confidence 113467788999999999987653
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.36 Score=38.28 Aligned_cols=99 Identities=11% Similarity=0.158 Sum_probs=70.4
Q ss_pred cEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhcc
Q 028547 50 RILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (207)
Q Consensus 50 ~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~ 128 (207)
+|.-+|.|. |..+..++-...++|+.+|.+.+-++.....+.. ++.++..+..++. ..-...|+++..=.+.
T Consensus 170 kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~--rv~~~~st~~~ie-e~v~~aDlvIgaVLIp---- 242 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG--RVHTLYSTPSNIE-EAVKKADLVIGAVLIP---- 242 (371)
T ss_pred cEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc--eeEEEEcCHHHHH-HHhhhccEEEEEEEec----
Confidence 788888886 7777777665445999999999888877766543 4566666655552 2345789988642222
Q ss_pred CCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+.+.+....+++.+.++||++++=+..
T Consensus 243 ---gakaPkLvt~e~vk~MkpGsVivDVAi 269 (371)
T COG0686 243 ---GAKAPKLVTREMVKQMKPGSVIVDVAI 269 (371)
T ss_pred ---CCCCceehhHHHHHhcCCCcEEEEEEE
Confidence 346778888999999999998875543
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.91 Score=34.90 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=68.3
Q ss_pred CcEEEEcCCCchhh----HHHHhcCC-CcEEEEeCCHHHHHHHHHHcc-CCCC--ceEEEeccccccc-cCCCC-eeEEE
Q 028547 49 QRILIVGCGNSAFS----EGMVDDGY-EDVVNVDISSVVIEAMMKKYS-NRPQ--LKYIKMDVRQMDE-FQTGS-FDSVV 118 (207)
Q Consensus 49 ~~vLdiG~G~G~~~----~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~-~~~~--~~~~~~d~~~~~~-~~~~~-fD~v~ 118 (207)
...+|+|+|+..=+ ..+++.+. ..++.+|++...+....+.+. ..+. +.-+++|...... .+..+ -=+++
T Consensus 80 ~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~f 159 (321)
T COG4301 80 CTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFVF 159 (321)
T ss_pred ceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEEE
Confidence 49999999987444 34444554 599999999998877655433 2233 3445566655321 22222 22333
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE-EEeCCc
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL-VTYGAP 161 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~-~~~~~~ 161 (207)
....+..+ ++.....++.++...|+||-.|++ ++..++
T Consensus 160 lGStlGN~-----tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~ 198 (321)
T COG4301 160 LGSTLGNL-----TPGECAVFLTQLRGALRPGDYFLLGVDLRKP 198 (321)
T ss_pred ecccccCC-----ChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence 34444444 678899999999999999988777 334444
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.2 Score=40.72 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=32.5
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK 88 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~ 88 (207)
..|+|+|.|.|+++.++.-...-.|.++|-+....+.+++
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 4899999999999999976533499999999877666543
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.19 E-value=1.1 Score=36.17 Aligned_cols=92 Identities=11% Similarity=0.161 Sum_probs=57.6
Q ss_pred CCcEEEEcCCC-chhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+.+||-+|||. |.++..+++. +..+++++|.+++-++.+++ +.. .. ..+ +.. ....+|+|+..--
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~----~~-~~~--~~~--~~~g~d~viD~~G-- 231 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE----TY-LID--DIP--EDLAVDHAFECVG-- 231 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc----ee-ehh--hhh--hccCCcEEEECCC--
Confidence 34999999875 6666666653 44589999999888777764 211 11 111 111 1124898885311
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
. ......+....+.|+++|.+++....
T Consensus 232 ~--------~~~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 232 G--------RGSQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred C--------CccHHHHHHHHHhCcCCcEEEEEeec
Confidence 0 11245678889999999999877643
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.85 Score=35.59 Aligned_cols=95 Identities=18% Similarity=0.180 Sum_probs=57.1
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE-ecc-ccccc-cCCCCeeEEEeCc
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDV-RQMDE-FQTGSFDSVVDKG 121 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~-~d~-~~~~~-~~~~~fD~v~~~~ 121 (207)
++.+||-+|+|. |.++..+++. |...++++|.+++-++.+++.-.. .++. .+. ..... .....+|+|+..-
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~~~~~~~g~d~vid~~ 195 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT----ALAEPEVLAERQGGLQNGRGVDVALEFS 195 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc----EecCchhhHHHHHHHhCCCCCCEEEECC
Confidence 334888888864 6666666665 443589999998888777663211 1111 010 11100 1234689988531
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....++.+.+.|+++|.++....
T Consensus 196 -------------G~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 196 -------------GATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred -------------CChHHHHHHHHHhcCCCEEEEecc
Confidence 113457778899999999987663
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.45 Score=32.27 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=56.8
Q ss_pred CchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccc---c-ccc-cCCCCeeEEEeCcchhhhccCCCC
Q 028547 58 NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR---Q-MDE-FQTGSFDSVVDKGTLDSLLCGSNS 132 (207)
Q Consensus 58 ~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~---~-~~~-~~~~~fD~v~~~~~l~~~~~~~~~ 132 (207)
-|..+..+++....+++++|.++..++.+++.-.. .++..+-. + ... .+...+|+|+..-
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~----~~~~~~~~~~~~~i~~~~~~~~~d~vid~~----------- 66 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD----HVIDYSDDDFVEQIRELTGGRGVDVVIDCV----------- 66 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES----EEEETTTSSHHHHHHHHTTTSSEEEEEESS-----------
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc----ccccccccccccccccccccccceEEEEec-----------
Confidence 46677777775336999999999999998874311 22222111 1 111 2335899999641
Q ss_pred hhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 133 RQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 133 ~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
.....++...++|+++|.+++.....
T Consensus 67 --g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 67 --GSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp --SSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred --CcHHHHHHHHHHhccCCEEEEEEccC
Confidence 12457888899999999999887544
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.76 Score=39.26 Aligned_cols=97 Identities=16% Similarity=0.330 Sum_probs=61.9
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc-----------c---------
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-----------M--------- 106 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~-----------~--------- 106 (207)
.+|+-+|+|. |..+...++. |. .|+++|.++..++.++. +. ..++..|..+ .
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~-lG----a~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS-MG----AEFLELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-cC----CeEEeccccccccccccceeecCHHHHHHHH
Confidence 4999999987 5666666654 44 79999999998887776 32 2232333211 0
Q ss_pred cccC--CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 107 DEFQ--TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 107 ~~~~--~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
..+. -..+|+|+....+.. ...+..+.+++.+.+|||++++=+..
T Consensus 239 ~~~~e~~~~~DIVI~TalipG-------~~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTALIPG-------KPAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHHHHhCCCCEEEECcccCC-------CCCCeeehHHHHhhCCCCCEEEEeee
Confidence 0011 346899987643332 13445578888999999998775544
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=2.1 Score=32.21 Aligned_cols=108 Identities=17% Similarity=0.158 Sum_probs=60.4
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
++||-.|++.| .+...+++.|+ +|++++-+++..+...+......++.++.+|+.+.... .-+..|.
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 84 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAIDG 84 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 38888888653 33344555677 89999988876665544433223678888888864211 0134677
Q ss_pred EEeCcchhhhccCCCCh-----------hhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 117 VVDKGTLDSLLCGSNSR-----------QNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~-----------~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++........ ...... .....+++.+.+.++++|.++++..
T Consensus 85 ii~~ag~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 85 LVVTVGGYVE-DTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred EEEcCCCcCC-CchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 7755322110 000000 1122345566667777888777653
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=92.45 E-value=1.9 Score=33.29 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=63.5
Q ss_pred CcEEEEcCCCchhhHHHHh----cC--CCcEEEEeCCH--------------------------HHHHHHHHHccCC---
Q 028547 49 QRILIVGCGNSAFSEGMVD----DG--YEDVVNVDISS--------------------------VVIEAMMKKYSNR--- 93 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~----~~--~~~v~~~D~s~--------------------------~~i~~~~~~~~~~--- 93 (207)
.-|+|+||--|..+..+.. .+ ..+++++|.-+ ..++..++++...
T Consensus 76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~ 155 (248)
T PF05711_consen 76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLL 155 (248)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTS
T ss_pred eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCCC
Confidence 3999999988876655432 12 13677777421 1345555555532
Q ss_pred -CCceEEEeccccccc-cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccccc
Q 028547 94 -PQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRL 165 (207)
Q Consensus 94 -~~~~~~~~d~~~~~~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~ 165 (207)
.+++++.+.+.+-.| .+.+.+-++... .+.. +.....|+.++..|.|||++++-++..++.+.
T Consensus 156 ~~~v~~vkG~F~dTLp~~p~~~IAll~lD--~DlY-------esT~~aLe~lyprl~~GGiIi~DDY~~~gcr~ 220 (248)
T PF05711_consen 156 DDNVRFVKGWFPDTLPDAPIERIALLHLD--CDLY-------ESTKDALEFLYPRLSPGGIIIFDDYGHPGCRK 220 (248)
T ss_dssp STTEEEEES-HHHHCCC-TT--EEEEEE-----SH-------HHHHHHHHHHGGGEEEEEEEEESSTTTHHHHH
T ss_pred cccEEEECCcchhhhccCCCccEEEEEEe--ccch-------HHHHHHHHHHHhhcCCCeEEEEeCCCChHHHH
Confidence 478999999877533 234444444433 2222 67889999999999999999998876654433
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.40 E-value=3 Score=33.41 Aligned_cols=89 Identities=10% Similarity=0.061 Sum_probs=54.9
Q ss_pred CCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 48 HQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+.+||-.|+|. |.++..+++....++++++.+++..+.+++.-.. .++ +..+. ..+.+|+++....
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~----~vi--~~~~~---~~~~~d~~i~~~~---- 232 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAA----SAG--GAYDT---PPEPLDAAILFAP---- 232 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCc----eec--ccccc---CcccceEEEECCC----
Confidence 34899999753 5555666664323799999998888877664211 111 11111 1235787663211
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
....+....+.|+++|.+++...
T Consensus 233 ---------~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 ---------AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ---------cHHHHHHHHHhhCCCcEEEEEec
Confidence 12367888899999999987664
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.94 Score=36.64 Aligned_cols=91 Identities=18% Similarity=0.265 Sum_probs=55.5
Q ss_pred CCcEEEEcCCC-chhhHHHHhcCCCcEEEEeC---CHHHHHHHHHHccCCCCceEEE---eccccccccCCCCeeEEEeC
Q 028547 48 HQRILIVGCGN-SAFSEGMVDDGYEDVVNVDI---SSVVIEAMMKKYSNRPQLKYIK---MDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~---s~~~i~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~fD~v~~~ 120 (207)
+.+||-+|+|. |.++..+++....++++++. ++..++.+++. .. .++. .+..+. .....+|+|+..
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~-Ga----~~v~~~~~~~~~~--~~~~~~d~vid~ 245 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL-GA----TYVNSSKTPVAEV--KLVGEFDLIIEA 245 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc-CC----EEecCCccchhhh--hhcCCCCEEEEC
Confidence 34899999875 67777777653238999886 67677766642 21 1211 111111 122468988864
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
- .....+....+.|+++|.+++...
T Consensus 246 ~-------------g~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 246 T-------------GVPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred c-------------CCHHHHHHHHHHccCCcEEEEEec
Confidence 1 112367788899999999887654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=3.7 Score=32.29 Aligned_cols=74 Identities=15% Similarity=0.331 Sum_probs=47.4
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
++||-.|++.| .++..+++.|. +|+.++.+++.++...+.+.....+..+.+|+.+.... ..+..|+
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 88 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGIDV 88 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 47888887665 34445566677 89999998887776655554323445556887764211 1256899
Q ss_pred EEeCcch
Q 028547 117 VVDKGTL 123 (207)
Q Consensus 117 v~~~~~l 123 (207)
++.+...
T Consensus 89 vI~nAG~ 95 (296)
T PRK05872 89 VVANAGI 95 (296)
T ss_pred EEECCCc
Confidence 9987554
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.69 E-value=2.2 Score=31.14 Aligned_cols=96 Identities=15% Similarity=0.245 Sum_probs=59.2
Q ss_pred EEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--------C-----------CCceEEEecccccccc
Q 028547 51 ILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--------R-----------PQLKYIKMDVRQMDEF 109 (207)
Q Consensus 51 vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--------~-----------~~~~~~~~d~~~~~~~ 109 (207)
|.-+|+|+ | .++..++..|+ +|+.+|.+++.++.+++++.. . .++. ...|+.+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~--- 76 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA--- 76 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG---
T ss_pred EEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH---
Confidence 56688876 4 55566666777 999999999988887665432 0 1222 22333333
Q ss_pred CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 110 QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 110 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
...|+|+-. +.. ..+-...+++++.+.+.|+.+|.-.+.+-+
T Consensus 77 --~~adlViEa-i~E-------~l~~K~~~~~~l~~~~~~~~ilasnTSsl~ 118 (180)
T PF02737_consen 77 --VDADLVIEA-IPE-------DLELKQELFAELDEICPPDTILASNTSSLS 118 (180)
T ss_dssp --CTESEEEE--S-S-------SHHHHHHHHHHHHCCS-TTSEEEE--SSS-
T ss_pred --hhhheehhh-ccc-------cHHHHHHHHHHHHHHhCCCceEEecCCCCC
Confidence 167888864 233 337788999999999999999887765444
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.7 Score=38.80 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=74.3
Q ss_pred cEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccc----cc--cCCCCeeEEEeC
Q 028547 50 RILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQM----DE--FQTGSFDSVVDK 120 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~----~~--~~~~~fD~v~~~ 120 (207)
.+|-+|-|.|.+..++--. +..+++++++.++++..+...+.-. .+..+...|..+. .. -.+..||+++..
T Consensus 298 ~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~d 377 (482)
T KOG2352|consen 298 KQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVD 377 (482)
T ss_pred cEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEEEE
Confidence 7888888889888777554 3359999999999999999877522 2334444444432 10 135578988852
Q ss_pred ---cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 121 ---GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 121 ---~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.-.+.+ ..+.+.--...++..+...|.|.|.|++......
T Consensus 378 vds~d~~g~-~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 378 VDSKDSHGM-QCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred CCCCCcccC-cCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 112222 3334445678889999999999999988664444
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.55 E-value=2.5 Score=33.66 Aligned_cols=95 Identities=12% Similarity=0.107 Sum_probs=57.1
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHH--cc--CCCCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKK--YS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~--~~--~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
+|+-+|+|. |.++..|++.|. +|+.++-+.+.++..++. +. .............. +-..+.||+|+..
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~--~~~~~~~D~viv~--- 77 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAET--ADAAEPIHRLLLA--- 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCC--cccccccCEEEEE---
Confidence 789999986 566677777776 899999887666655542 11 10111111111111 1123578988842
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. ..-+....++.+...+.++..++..-
T Consensus 78 v-------K~~~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 78 C-------KAYDAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred C-------CHHhHHHHHHHHHhhCCCCCEEEEEe
Confidence 1 11356778888999999988766543
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.45 E-value=1.3 Score=35.50 Aligned_cols=94 Identities=22% Similarity=0.267 Sum_probs=55.3
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE---ecccccccc-CCCCeeEEEeCc
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK---MDVRQMDEF-QTGSFDSVVDKG 121 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~---~d~~~~~~~-~~~~fD~v~~~~ 121 (207)
+.+||-.|+|. |.++..+++. |...+++++.+++..+.+++.-.. .++. .+....... ....+|+|+...
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~----~~i~~~~~~~~~~~~~~~~~~~d~vid~~ 239 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGAD----FVINSGQDDVQEIRELTSGAGADVAIECS 239 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC----EEEcCCcchHHHHHHHhCCCCCCEEEECC
Confidence 44888888754 5666666664 443399999998888777553211 1111 111111111 234699998531
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....+....+.|+++|.+++...
T Consensus 240 -------------g~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 240 -------------GNTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred -------------CCHHHHHHHHHHhhcCCEEEEEcC
Confidence 112345667788999999987653
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.43 E-value=1.8 Score=31.98 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=64.8
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhc----CC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc------ccCCC
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDD----GY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD------EFQTG 112 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~----~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~ 112 (207)
....+..|+|+|...|.-+.+.+.. |. .+|.++|++-..+..+... .+++.|+.++..++. ...++
T Consensus 66 w~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---~p~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 66 WELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---VPDILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred HhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---CCCeEEEeCCCCCHHHHHHHHHHhcC
Confidence 3444459999999887666655543 42 3999999987654444332 268999999887751 01122
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.--+.++-..-|+. +....-++-..++|..|-.+++.+
T Consensus 143 y~kIfvilDsdHs~-------~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 143 YPKIFVILDSDHSM-------EHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred CCcEEEEecCCchH-------HHHHHHHHHhhhHhhcCceEEEec
Confidence 22222222233333 556667777788999888887755
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.22 E-value=4.8 Score=30.73 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=48.0
Q ss_pred cEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc----C------CCCeeE
Q 028547 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF----Q------TGSFDS 116 (207)
Q Consensus 50 ~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~----~------~~~fD~ 116 (207)
++|-.|++.| .++..+++.|. +|+.++.+++.++....... ..++.++.+|+.+.... . .+++|.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~ 80 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAAATGGRLDV 80 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence 5777887654 34455666776 89999988877766655443 24678889999874211 0 356798
Q ss_pred EEeCcch
Q 028547 117 VVDKGTL 123 (207)
Q Consensus 117 v~~~~~l 123 (207)
++.+...
T Consensus 81 vi~~ag~ 87 (260)
T PRK08267 81 LFNNAGI 87 (260)
T ss_pred EEECCCC
Confidence 8876543
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=91.12 E-value=1.5 Score=35.80 Aligned_cols=93 Identities=15% Similarity=0.220 Sum_probs=56.2
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE---ecccc-ccccCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK---MDVRQ-MDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~---~d~~~-~~~~~~~~fD~v~~~~~ 122 (207)
.+||-.|+|. |.++..+++. |...|+++|.+++.++.+++. .. ..++. .+..+ ......+.+|+|+..-
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga---~~~i~~~~~~~~~~i~~~~~~g~d~vid~~- 267 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GA---TATVNAGDPNAVEQVRELTGGGVDYAFEMA- 267 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CC---ceEeCCCchhHHHHHHHHhCCCCCEEEECC-
Confidence 4788888764 6666666665 444699999999888888653 21 11111 11111 1111223689998531
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....+....+.|+++|.++....
T Consensus 268 ------------G~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 268 ------------GSVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred ------------CChHHHHHHHHHHhcCCEEEEEcc
Confidence 112456777889999999887653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=90.91 E-value=2.2 Score=30.72 Aligned_cols=107 Identities=17% Similarity=0.245 Sum_probs=60.9
Q ss_pred EEcCCCchhhHHHHhc-C-CCcEEEEeCCH--HHHHHHH---HHcc--CCCCceE-EEeccccccc---cCCCCeeEEEe
Q 028547 53 IVGCGNSAFSEGMVDD-G-YEDVVNVDISS--VVIEAMM---KKYS--NRPQLKY-IKMDVRQMDE---FQTGSFDSVVD 119 (207)
Q Consensus 53 diG~G~G~~~~~l~~~-~-~~~v~~~D~s~--~~i~~~~---~~~~--~~~~~~~-~~~d~~~~~~---~~~~~fD~v~~ 119 (207)
-+|=|.-+++..+++. + ...+++.-.+. +..+... .++. ...++.+ ...|+.++.. .....||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 3566666666777665 3 23566554333 3222211 2211 1123333 3457777632 24688999998
Q ss_pred CcchhhhccCC--------CChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 120 KGTLDSLLCGS--------NSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 120 ~~~l~~~~~~~--------~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+.+-.. .+. ....-...+++.+.++|+++|.+.++.....
T Consensus 82 NFPH~G--~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~ 129 (166)
T PF10354_consen 82 NFPHVG--GGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ 129 (166)
T ss_pred eCCCCC--CCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 754332 111 1234578889999999999999999775443
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.71 E-value=5.2 Score=30.71 Aligned_cols=71 Identities=20% Similarity=0.289 Sum_probs=45.5
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
+++|-.|++.| .++..+++.|+ +|+.++.+++..+...+... ..+.++.+|+.+.... ..+..|.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 83 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG--ERARFIATDITDDAAIERAVATVVARFGRVDI 83 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 37888887554 44455666777 89999988765555444332 3577888888875211 1246788
Q ss_pred EEeCcc
Q 028547 117 VVDKGT 122 (207)
Q Consensus 117 v~~~~~ 122 (207)
++.+..
T Consensus 84 lv~~ag 89 (261)
T PRK08265 84 LVNLAC 89 (261)
T ss_pred EEECCC
Confidence 887643
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.47 E-value=1.8 Score=34.01 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=59.5
Q ss_pred cEEEEcCCC--chhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 50 RILIVGCGN--SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+|+-+|.|. |.++..+...|+ ..+++.|.+...++.+... .+.....+.... ......|+|+..=++
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-----gv~d~~~~~~~~--~~~~~aD~VivavPi--- 74 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-----GVIDELTVAGLA--EAAAEADLVIVAVPI--- 74 (279)
T ss_pred EEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-----Ccccccccchhh--hhcccCCEEEEeccH---
Confidence 788888875 667777777776 3688999988777777643 222222111101 123457988865443
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
.....+++++...|++|.++.=++..
T Consensus 75 -------~~~~~~l~~l~~~l~~g~iv~Dv~S~ 100 (279)
T COG0287 75 -------EATEEVLKELAPHLKKGAIVTDVGSV 100 (279)
T ss_pred -------HHHHHHHHHhcccCCCCCEEEecccc
Confidence 45588899999989987776544433
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=90.45 E-value=2.2 Score=34.52 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=56.4
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE---ecccc-ccc-cCCCCeeEEEeC
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK---MDVRQ-MDE-FQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~---~d~~~-~~~-~~~~~fD~v~~~ 120 (207)
+.+||-.|+|. |.++..+++. |...|+++|.+++..+.+++. .. -.++. .+..+ ... .....+|+|+..
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga---~~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA---THTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC---ceEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 34888888864 6666666665 443599999999888888653 21 11121 11111 100 122468988853
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
- . -...++...+.++++|.+++...
T Consensus 253 ~--g-----------~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 253 V--G-----------RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred C--C-----------CHHHHHHHHHHhccCCEEEEECC
Confidence 1 1 12346667889999999887653
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=90.44 E-value=3.8 Score=32.58 Aligned_cols=115 Identities=13% Similarity=0.158 Sum_probs=72.6
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCC-HHHHHHHHHHccCCC-----CceEEEeccccc-cc
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDIS-SVVIEAMMKKYSNRP-----QLKYIKMDVRQM-DE 108 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s-~~~i~~~~~~~~~~~-----~~~~~~~d~~~~-~~ 108 (207)
+.+.+...+......|+.+|||-= +...--.+...+...|++ |+.++.-++.+++.. ..+++..|+.+. ++
T Consensus 81 fD~~~~~~~~~g~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~ 158 (297)
T COG3315 81 FDDFVRAALDAGIRQVVILGAGLD--TRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWP 158 (297)
T ss_pred HHHHHHHHHHhcccEEEEeccccc--cceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchH
Confidence 334455555554459999999852 222211122234444444 445555555555433 688999999942 11
Q ss_pred --cC-----CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 109 --FQ-----TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 109 --~~-----~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.. ...-=++++-+++.++ +++....++..|.....||-.++...
T Consensus 159 ~~L~~~G~d~~~pt~~iaEGLl~YL-----~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 159 QALAAAGFDRSRPTLWIAEGLLMYL-----PEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred HHHHhcCCCcCCCeEEEeccccccC-----CHHHHHHHHHHHHHhCCCCceEEEec
Confidence 22 3334478888899888 88899999999999998877776654
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.33 E-value=2.8 Score=31.85 Aligned_cols=98 Identities=18% Similarity=0.279 Sum_probs=57.5
Q ss_pred CCCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc-ccccCCCCeeEEEeCcchh
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~fD~v~~~~~l~ 124 (207)
.+.+||..|+|+ |..+..+++....++++++.++...+.+++.... .-+.....+... ........+|+++....
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~-- 210 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGAD-HVIDYKEEDLEEELRLTGGGGADVVIDAVG-- 210 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc-eeccCCcCCHHHHHHHhcCCCCCEEEECCC--
Confidence 334999999986 6666666665335999999998877777543211 000000000000 00013457999985411
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
....+..+.+.|+++|.++....
T Consensus 211 -----------~~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 211 -----------GPETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred -----------CHHHHHHHHHhcccCCEEEEEcc
Confidence 01356777889999999887653
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.24 E-value=1.5 Score=34.10 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=46.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeC
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
+...+|+|+..|.++-.+.+++. .|+++|-.+-+ ..+-+.+.+.-...|..++.| ...+.|-.+|.
T Consensus 212 ~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma-----~sL~dtg~v~h~r~DGfk~~P-~r~~idWmVCD 277 (358)
T COG2933 212 GMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMA-----QSLMDTGQVTHLREDGFKFRP-TRSNIDWMVCD 277 (358)
T ss_pred CceeeecccCCCccchhhhhcce-EEEEeccchhh-----hhhhcccceeeeeccCccccc-CCCCCceEEee
Confidence 34889999999999999999987 99999976532 112222456666677777754 34567777665
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.18 E-value=2.7 Score=35.25 Aligned_cols=108 Identities=13% Similarity=0.151 Sum_probs=64.2
Q ss_pred CcEEEEcCCCch--hhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC-CCceEEEec--cc-cccccC-CCCeeEEEeC
Q 028547 49 QRILIVGCGNSA--FSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMD--VR-QMDEFQ-TGSFDSVVDK 120 (207)
Q Consensus 49 ~~vLdiG~G~G~--~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d--~~-~~~~~~-~~~fD~v~~~ 120 (207)
..+.|+|.|.|. ++....... ...++.||.+..+.........+. .+....... .. ...|.. ...||+|++.
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~a 281 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICA 281 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEee
Confidence 378888887653 333333333 358999999999999988877652 111111111 11 112333 3459999998
Q ss_pred cchhhhccCCCChhhHHHHHHHHH-HhcCCCcEEEEEEeCC
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVW-RVLKDKGVYILVTYGA 160 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~-~~L~pgG~~~~~~~~~ 160 (207)
..++.+.+. .......++.+ +..++|+.++++.-+.
T Consensus 282 h~l~~~~s~----~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 282 HKLHELGSK----FSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeeccCCc----hhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 888876322 24444444444 5567788888776433
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.58 Score=36.03 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=36.3
Q ss_pred ccCHHHHHHhhCCC-CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHH
Q 028547 33 YPSLAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMM 87 (207)
Q Consensus 33 ~~~~~~~l~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~ 87 (207)
...+...+...++. ...+++|+-||+|..+..+...+. .++.-|+++..+...+
T Consensus 5 K~~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~-~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 5 KRKLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGK-RVIINDINPDLINFWK 59 (260)
T ss_dssp SGGGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SS-EEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEecchhHHHHHhccccc-ceeeeechHHHHHHHH
Confidence 34456666667775 445999999999999988876544 8999999998766665
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=5.6 Score=30.47 Aligned_cols=73 Identities=15% Similarity=0.346 Sum_probs=48.0
Q ss_pred cEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc--------CCCCeeEEE
Q 028547 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--------QTGSFDSVV 118 (207)
Q Consensus 50 ~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~~fD~v~ 118 (207)
++|-.|++.| .++..+++.|+ +|++++.++..++...+......++.++.+|+.+.... ..+..|.++
T Consensus 7 ~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~lv 85 (263)
T PRK09072 7 RVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVLI 85 (263)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 7788887654 34555666777 89999998877766655443224678888888875211 024678888
Q ss_pred eCcch
Q 028547 119 DKGTL 123 (207)
Q Consensus 119 ~~~~l 123 (207)
.+...
T Consensus 86 ~~ag~ 90 (263)
T PRK09072 86 NNAGV 90 (263)
T ss_pred ECCCC
Confidence 76443
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.73 E-value=3 Score=32.66 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=52.6
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+|.-+|+|. |.++..+.+.|. +|+++|.+++.++.+.+.- .+.....+. + .....|+|+..-+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g----~~~~~~~~~-~----~~~~aDlVilavp~---- 67 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERG----LVDEASTDL-S----LLKDCDLVILALPI---- 67 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCC----CcccccCCH-h----HhcCCCEEEEcCCH----
Confidence 466788875 566667777776 8999999998887776531 111111111 1 12357988865333
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVY 153 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~ 153 (207)
......++++...++++.++
T Consensus 68 ------~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 68 ------GLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ------HHHHHHHHHHHHhCCCCcEE
Confidence 34466778888888876544
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=89.41 E-value=4.2 Score=32.16 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=56.4
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
+.||-=|.|+| .++.+++++|. .+...|++++......+...+...+....+|+.+.+.. .-+..|+
T Consensus 39 ~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V~I 117 (300)
T KOG1201|consen 39 EIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDVDI 117 (300)
T ss_pred CEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCceE
Confidence 48888888887 56778888887 88999999988777766665434688899999885321 3467899
Q ss_pred EEeCcchhh
Q 028547 117 VVDKGTLDS 125 (207)
Q Consensus 117 v~~~~~l~~ 125 (207)
++.+..+.+
T Consensus 118 LVNNAGI~~ 126 (300)
T KOG1201|consen 118 LVNNAGIVT 126 (300)
T ss_pred EEecccccc
Confidence 998765543
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=88.83 E-value=6.8 Score=32.09 Aligned_cols=94 Identities=19% Similarity=0.302 Sum_probs=56.4
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec-----ccc-ccccCCCCeeEEEe
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-----VRQ-MDEFQTGSFDSVVD 119 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d-----~~~-~~~~~~~~fD~v~~ 119 (207)
+.+||-+|+|. |..+..+++. |...|+++|.+++.++.+++. .. -.++... +.+ ......+.+|+|+.
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga---~~~i~~~~~~~~~~~~v~~~~~~g~dvvid 274 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GI---TDFINPKDSDKPVHERIREMTGGGVDYSFE 274 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CC---cEEEecccccchHHHHHHHHhCCCCCEEEE
Confidence 34899999865 6666666665 444699999999888888653 21 1122211 111 11112236899985
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEEe
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 158 (207)
.. .....+....+.++++ |.+++...
T Consensus 275 ~~-------------G~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 275 CA-------------GNVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CC-------------CChHHHHHHHHhhhcCCCEEEEEcc
Confidence 31 1124566777888886 88877553
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=88.77 E-value=2.7 Score=35.05 Aligned_cols=87 Identities=9% Similarity=0.160 Sum_probs=55.0
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.+++|+-+|+|. |......++. |. +|+.+|.++.-...++.. ..... +..+. -...|+|+..-
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~-----G~~~~--~~~e~----v~~aDVVI~at--- 265 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME-----GYEVM--TMEEA----VKEGDIFVTTT--- 265 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc-----CCEEc--cHHHH----HcCCCEEEECC---
Confidence 345999999997 6666655554 55 899999998776666542 11211 22221 13579998531
Q ss_pred hhccCCCChhhHHHHHHH-HHHhcCCCcEEEEEEe
Q 028547 125 SLLCGSNSRQNATQMLKE-VWRVLKDKGVYILVTY 158 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~-~~~~L~pgG~~~~~~~ 158 (207)
.....+.. ..+.+++||.++.+..
T Consensus 266 ----------G~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 266 ----------GNKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred ----------CCHHHHHHHHHhcCCCCcEEEEeCC
Confidence 11234444 4889999999987663
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=88.70 E-value=0.4 Score=41.38 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=61.5
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc---c----cCCCCe
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---E----FQTGSF 114 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~---~----~~~~~f 114 (207)
+.+.. .|||+||.+|.+++..++.-+ +-|+|+|+.|. ...+++..++.|+..-. + ...-+.
T Consensus 42 l~~a~-~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi---------kp~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 42 LEKAH-VVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI---------KPIPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred ccccc-hheeeccCCcHHHHHHHHhCCCCceEEEeeeeec---------ccCCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 34444 999999999999998888632 48999999772 22245666666655420 0 123345
Q ss_pred eEEEeCcchhhhccCCCCh------hhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 115 DSVVDKGTLDSLLCGSNSR------QNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~------~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
|+|+..+.-. + .+.+-. .-....++-+...|+.||.|+--.|.
T Consensus 112 dvVLhDgapn-V-g~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfr 160 (780)
T KOG1098|consen 112 DVVLHDGAPN-V-GGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFR 160 (780)
T ss_pred cEEeecCCCc-c-chhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccccc
Confidence 8888654321 1 111000 12233444456788999997654443
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.44 E-value=4.4 Score=31.80 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=67.6
Q ss_pred CCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEecccccccc-CCCCeeEEEeCcch
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEF-QTGSFDSVVDKGTL 123 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~-~~~~fD~v~~~~~l 123 (207)
++.|+-+| -.-..+..++-.+ +.++..+|+++..+....+..... .|+..+..|+.+..|. -...||+.+...+
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp- 230 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP- 230 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch-
Confidence 34689898 3333344444444 469999999999999988766532 5789999999996431 2578999886533
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCC---cEEEEEEe
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDK---GVYILVTY 158 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pg---G~~~~~~~ 158 (207)
..+ .....++.+=...|+.- |.|.+...
T Consensus 231 eTi-------~alk~FlgRGI~tLkg~~~aGyfgiT~r 261 (354)
T COG1568 231 ETI-------KALKLFLGRGIATLKGEGCAGYFGITRR 261 (354)
T ss_pred hhH-------HHHHHHHhccHHHhcCCCccceEeeeec
Confidence 333 45566666555666654 66766553
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.26 E-value=5.2 Score=31.53 Aligned_cols=97 Identities=20% Similarity=0.315 Sum_probs=61.8
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-------CC------------CceEEEeccccccc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RP------------QLKYIKMDVRQMDE 108 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-------~~------------~~~~~~~d~~~~~~ 108 (207)
+|--||+|+ +.++..++..|+ +|+.+|.+++.++.+.+++.. .. +++ ...|...
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~--- 81 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD--- 81 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH---
Confidence 788889985 455666677787 999999999998886654321 00 111 1222211
Q ss_pred cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhc-CCCcEEEEEEeCCc
Q 028547 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVL-KDKGVYILVTYGAP 161 (207)
Q Consensus 109 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~~~~~~~~~~ 161 (207)
-...|+|+.. +.+ +.+-...++..+.+.+ +|+.++.-.+.+.+
T Consensus 82 --~~~~d~ViEa-v~E-------~~~~K~~l~~~l~~~~~~~~~il~snTS~~~ 125 (286)
T PRK07819 82 --FADRQLVIEA-VVE-------DEAVKTEIFAELDKVVTDPDAVLASNTSSIP 125 (286)
T ss_pred --hCCCCEEEEe-ccc-------CHHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 2356888864 233 3366778888888888 77777766554434
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.92 E-value=2.8 Score=34.54 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=30.6
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHc
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY 90 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~ 90 (207)
++.+||-|++|....+. ++..++++|++||+++..+...+-+.
T Consensus 35 ~~d~vl~ItSaG~N~L~-yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 35 PDDRVLTITSAGCNALD-YLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCeEEEEccCCchHHH-HHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 33489999876554444 45555779999999998877766543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=87.75 E-value=6.8 Score=32.09 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=54.8
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe-----cccc-ccccCCCCeeEEEe
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-----DVRQ-MDEFQTGSFDSVVD 119 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~-----d~~~-~~~~~~~~fD~v~~ 119 (207)
+.+||-.|+|. |.++..+++. |...++++|.+++..+.+++. .. -.++.. +..+ ......+.+|+|+.
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga---~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 269 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GV---TDFINPNDLSEPIQQVIKRMTGGGADYSFE 269 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC---cEEEcccccchHHHHHHHHHhCCCCCEEEE
Confidence 34888888765 6666666664 444688999888888777553 21 111111 1111 11111236898885
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEE
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVT 157 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~ 157 (207)
.- .....+....+.++++ |.+++..
T Consensus 270 ~~-------------G~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 270 CV-------------GDTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CC-------------CChHHHHHHHHhhccCCCEEEEEC
Confidence 31 1123466778889998 9998754
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.59 E-value=4 Score=36.29 Aligned_cols=98 Identities=18% Similarity=0.330 Sum_probs=60.4
Q ss_pred cEEEEcCCCchhhHHHHhc----CC-CcEEEEeCCHHHHHHHHHHc---cCCC--------CceEEEecccccccc----
Q 028547 50 RILIVGCGNSAFSEGMVDD----GY-EDVVNVDISSVVIEAMMKKY---SNRP--------QLKYIKMDVRQMDEF---- 109 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~----~~-~~v~~~D~s~~~i~~~~~~~---~~~~--------~~~~~~~d~~~~~~~---- 109 (207)
.|+-+|+|=|-+.....+. +. -+++++|.++..+.....+. ..+. .++++..|+.++..-
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999776554442 32 28999999966443333332 2222 489999999997311
Q ss_pred ------CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCC----CcE
Q 028547 110 ------QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKD----KGV 152 (207)
Q Consensus 110 ------~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~p----gG~ 152 (207)
.-+++|+||+- .|..+++. +--+..|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSE-LLGSFGDN----ELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSE-LLGSLGDN----ELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHh-hhcccccc----cCCHHHHHHHHHhhhhhcccccc
Confidence 01368999964 34444222 3345566666666665 675
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=87.31 E-value=4.9 Score=32.04 Aligned_cols=92 Identities=20% Similarity=0.354 Sum_probs=55.3
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec---cccccccCCCCeeEEEeCcc
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD---VRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~fD~v~~~~~ 122 (207)
+.+||-.|||. |..+..+++. |...+++++.+++..+.+++. .. -.++..+ +.... .....+|+|+....
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~---~~vi~~~~~~~~~~~-~~~~~vd~vld~~g 240 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GA---DETVNLARDPLAAYA-ADKGDFDVVFEASG 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC---CEEEcCCchhhhhhh-ccCCCccEEEECCC
Confidence 34888888765 6666666664 444789999888877766553 21 1122111 11221 12245899985311
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
....++.+.+.|+++|.++...
T Consensus 241 -------------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 -------------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred -------------CHHHHHHHHHHHhcCCEEEEEe
Confidence 1234677889999999988754
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.64 E-value=7.2 Score=34.82 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=62.2
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
++||-.|++.| .++..+++.|. +|+++|.++...+.+.+.+....++.++.+|+.+.... ..+.+|+
T Consensus 423 k~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDv 501 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDI 501 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 47888886444 33344555676 89999999877766655443224677888888764211 1246899
Q ss_pred EEeCcchhhhcc-CCCChh-----------hHHHHHHHHHHhcCC---CcEEEEEE
Q 028547 117 VVDKGTLDSLLC-GSNSRQ-----------NATQMLKEVWRVLKD---KGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~-~~~~~~-----------~~~~~l~~~~~~L~p---gG~~~~~~ 157 (207)
|+.+........ ...+.+ ....+++.+.+.+++ +|.+++..
T Consensus 502 vI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 502 VVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 887654321100 000111 134456666776665 57777654
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.51 E-value=13 Score=28.53 Aligned_cols=74 Identities=16% Similarity=0.217 Sum_probs=42.1
Q ss_pred CcEEEEcCCC--c---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCe
Q 028547 49 QRILIVGCGN--S---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 49 ~~vLdiG~G~--G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
+.+|-.|+++ | ..+..+++.|+ +|+.++.+.+..+..++.........++.+|+.+.... .-+..
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~l 89 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGRL 89 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCCC
Confidence 4788888765 3 34455666677 78888877543222222111112345677887764211 12568
Q ss_pred eEEEeCcch
Q 028547 115 DSVVDKGTL 123 (207)
Q Consensus 115 D~v~~~~~l 123 (207)
|+++.+..+
T Consensus 90 d~lv~nAg~ 98 (258)
T PRK07533 90 DFLLHSIAF 98 (258)
T ss_pred CEEEEcCcc
Confidence 998877543
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.41 E-value=7.3 Score=31.65 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=51.7
Q ss_pred CCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEE-eccccccccCCCCeeEEEeCcchhh
Q 028547 48 HQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+.+||-.|+|. |.++..+++....++++++.+++....+.+.+.. ..++. .+........ +.+|+|+..-
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga---~~vi~~~~~~~~~~~~-~~~D~vid~~---- 255 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA---DSFLVSTDPEKMKAAI-GTMDYIIDTV---- 255 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC---cEEEcCCCHHHHHhhc-CCCCEEEECC----
Confidence 34788888865 6676777665333788887776543333222221 11111 1111111111 2588888531
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....++...+.|+++|.++....
T Consensus 256 ---------g~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 256 ---------SAVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred ---------CCHHHHHHHHHHhcCCcEEEEeCC
Confidence 112356778899999999887653
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.14 E-value=6.9 Score=31.63 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=57.0
Q ss_pred CCcEEEEcC-C-CchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe----cccc-ccccCCCCeeEEEeC
Q 028547 48 HQRILIVGC-G-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM----DVRQ-MDEFQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~-G-~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~----d~~~-~~~~~~~~fD~v~~~ 120 (207)
+.+||-.|+ | .|.++..+++....++++++.+++..+.+++.+... .++.. +..+ ......+.+|+|+..
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~---~vi~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFD---EAFNYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCC---EEEECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 348888887 3 577877777763337999998888777776433221 12211 1111 111122468988853
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. . ...+....+.|+++|.+++..
T Consensus 236 -----v--------G-~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 236 -----V--------G-GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred -----C--------C-HHHHHHHHHHhccCCEEEEEC
Confidence 1 1 135677889999999988754
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.10 E-value=5.8 Score=32.78 Aligned_cols=72 Identities=18% Similarity=0.343 Sum_probs=49.6
Q ss_pred cEEEEcCCC-chhhHHH-HhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc--CCCCeeEEEeCcch
Q 028547 50 RILIVGCGN-SAFSEGM-VDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--QTGSFDSVVDKGTL 123 (207)
Q Consensus 50 ~vLdiG~G~-G~~~~~l-~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~fD~v~~~~~l 123 (207)
+||-||||. |+-.... ++.+-.+|+..|-+.+..+.+...... ++++.+.|+.+.... --..+|+|+...+.
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~--~v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG--KVEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc--cceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 789999975 5555444 555535999999998877777665332 788999998886211 12345999876443
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.07 E-value=6.7 Score=30.83 Aligned_cols=94 Identities=17% Similarity=0.290 Sum_probs=56.7
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--------C------------CCceEEEecccccc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--------R------------PQLKYIKMDVRQMD 107 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--------~------------~~~~~~~~d~~~~~ 107 (207)
+|.-+|+|. +.++..++..|. +|+.+|.+++.++.++++... . .++. ...|..+.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~a- 81 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAEA- 81 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHHH-
Confidence 678888885 345556666676 999999999888877654210 0 0111 11222221
Q ss_pred ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 108 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
-...|+|+..-+ . ..+....+++++...++++.++...+
T Consensus 82 ---~~~aDlVieavp-e-------~~~~k~~~~~~l~~~~~~~~ii~snt 120 (287)
T PRK08293 82 ---VKDADLVIEAVP-E-------DPEIKGDFYEELAKVAPEKTIFATNS 120 (287)
T ss_pred ---hcCCCEEEEecc-C-------CHHHHHHHHHHHHhhCCCCCEEEECc
Confidence 235688886422 1 12456778888888888777654433
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.95 E-value=4.7 Score=32.42 Aligned_cols=93 Identities=15% Similarity=0.254 Sum_probs=54.2
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccccc-ccCCCCee-EEEeCc
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQMD-EFQTGSFD-SVVDKG 121 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~~~-~~~~~~fD-~v~~~~ 121 (207)
.+||-.|+|. |.++..+++. |...+++++.+++..+.+++. .. -.++.. +..+.. ......+| +|+..
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga---~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~- 236 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GA---MQTFNSREMSAPQIQSVLRELRFDQLILET- 236 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC---ceEecCcccCHHHHHHHhcCCCCCeEEEEC-
Confidence 4888888865 6666666664 443478999999888877542 21 011111 111110 01234577 55532
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
. .-...+....+.|+++|.+++...
T Consensus 237 ----~--------G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 237 ----A--------GVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred ----C--------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 1 113467778899999999887753
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.93 E-value=7.8 Score=30.49 Aligned_cols=90 Identities=18% Similarity=0.268 Sum_probs=55.1
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----------C------------CceEEEecccc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----------P------------QLKYIKMDVRQ 105 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----------~------------~~~~~~~d~~~ 105 (207)
+|.-+|+|. +.++..++..|+ +|+.+|.+++.++.++++.... . ++.+. .|. +
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 81 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY-E 81 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH-H
Confidence 688899985 356666677777 9999999999887665432210 0 11111 111 1
Q ss_pred ccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 106 MDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 106 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
.....|+|+..- .. .......+++++.+.++++.++.
T Consensus 82 ----~~~~aDlVieav-~e-------~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 ----SLSDADFIVEAV-PE-------KLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred ----HhCCCCEEEEcC-cC-------cHHHHHHHHHHHHhhCCCCeEEE
Confidence 113468888642 11 12346778888888888877654
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=85.92 E-value=6.6 Score=30.41 Aligned_cols=77 Identities=18% Similarity=0.152 Sum_probs=46.2
Q ss_pred hHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHH
Q 028547 62 SEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQML 140 (207)
Q Consensus 62 ~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l 140 (207)
+..+.+.++ .+|+++|.++..++.+.+.- -+.-...+.... ..+|+|+..-++. ....++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g----~~~~~~~~~~~~-----~~~DlvvlavP~~----------~~~~~l 62 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELG----IIDEASTDIEAV-----EDADLVVLAVPVS----------AIEDVL 62 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTT----SSSEEESHHHHG-----GCCSEEEE-S-HH----------HHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCC----CeeeccCCHhHh-----cCCCEEEEcCCHH----------HHHHHH
Confidence 345566663 49999999999988886641 122222221111 2469998765444 458899
Q ss_pred HHHHHhcCCCcEEEEEE
Q 028547 141 KEVWRVLKDKGVYILVT 157 (207)
Q Consensus 141 ~~~~~~L~pgG~~~~~~ 157 (207)
+++...+++|+++.=+.
T Consensus 63 ~~~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 63 EEIAPYLKPGAIVTDVG 79 (258)
T ss_dssp HHHHCGS-TTSEEEE--
T ss_pred HHhhhhcCCCcEEEEeC
Confidence 99999998887665444
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=85.79 E-value=18 Score=30.04 Aligned_cols=95 Identities=16% Similarity=0.230 Sum_probs=55.7
Q ss_pred CcEEEEc-CC-CchhhHHHHhc---CCCcEEEEeCCHHHHHHHHHHccCCC---Cce--EEEe----cccc-ccc-cCCC
Q 028547 49 QRILIVG-CG-NSAFSEGMVDD---GYEDVVNVDISSVVIEAMMKKYSNRP---QLK--YIKM----DVRQ-MDE-FQTG 112 (207)
Q Consensus 49 ~~vLdiG-~G-~G~~~~~l~~~---~~~~v~~~D~s~~~i~~~~~~~~~~~---~~~--~~~~----d~~~-~~~-~~~~ 112 (207)
.+|+-+| +| -|..+..+++. |..+++++|.+++.++.+++...... ... ++.. ++.+ ... ....
T Consensus 177 ~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~ 256 (410)
T cd08238 177 GNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQ 256 (410)
T ss_pred CEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCCC
Confidence 4788886 44 47777777775 23479999999999888877532100 111 1211 1111 100 1234
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.+|+|+... .....+....+.++++|.+++.
T Consensus 257 g~D~vid~~-------------g~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 257 GFDDVFVFV-------------PVPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCEEEEcC-------------CCHHHHHHHHHHhccCCeEEEE
Confidence 689888531 1134567788999988876554
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=85.77 E-value=2.9 Score=30.70 Aligned_cols=111 Identities=18% Similarity=0.200 Sum_probs=58.3
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--C-----------CceEEE-eccccccccCCCC
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--P-----------QLKYIK-MDVRQMDEFQTGS 113 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~-----------~~~~~~-~d~~~~~~~~~~~ 113 (207)
+|--+|.|- | .++..+++.|+ +|+|+|++++.++..++-.... + .-++.. .|.... ...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~a----i~~ 76 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEA----IKD 76 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHH----HHH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhh----hhc
Confidence 455566664 3 45566777888 9999999999888776532110 0 112222 222221 123
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccccc
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRL 165 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~ 165 (207)
.|+++..-....-.-+..+.......++.+.+.++++-++++.+-..++...
T Consensus 77 adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 77 ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTE 128 (185)
T ss_dssp -SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH
T ss_pred cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh
Confidence 5666643111110011123356899999999999997777776555554444
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.69 E-value=8.3 Score=30.62 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=53.0
Q ss_pred cEEEEcCCC--chhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 50 RILIVGCGN--SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+|.-||+|. +.++..+.+.+. .+|+++|.+++..+.+++.- .......+..+. ....|+|+..-...
T Consensus 8 ~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g----~~~~~~~~~~~~----~~~aDvViiavp~~-- 77 (307)
T PRK07502 8 RVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELG----LGDRVTTSAAEA----VKGADLVILCVPVG-- 77 (307)
T ss_pred EEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCC----CCceecCCHHHH----hcCCCEEEECCCHH--
Confidence 788899886 344555555554 38999999998777665421 011111122111 23579888653322
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
....+++.+...++++.+++.+
T Consensus 78 --------~~~~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 78 --------ASGAVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred --------HHHHHHHHHHhhCCCCCEEEeC
Confidence 3356677777888888765543
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.46 E-value=10 Score=28.51 Aligned_cols=72 Identities=19% Similarity=0.313 Sum_probs=43.4
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc----C-----CCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF----Q-----TGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~----~-----~~~fD 115 (207)
+++|-.|++.| .++..+++.|+ ++++++.+++.+....+.+.. ..++.++.+|+.+.... . -+..|
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 86 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGLD 86 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 37787776433 23334455666 888888887766555444332 24678888898875211 0 14678
Q ss_pred EEEeCc
Q 028547 116 SVVDKG 121 (207)
Q Consensus 116 ~v~~~~ 121 (207)
.|+...
T Consensus 87 ~vi~~a 92 (250)
T PRK12939 87 GLVNNA 92 (250)
T ss_pred EEEECC
Confidence 887653
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=85.44 E-value=13 Score=31.83 Aligned_cols=109 Identities=12% Similarity=0.150 Sum_probs=66.3
Q ss_pred CcEEEEcCCCchhhHHHHhc---C--CCcEEEEeCCHHHHHHHHHHcc--CC--CCceEEEecccc-ccccCCCCeeEEE
Q 028547 49 QRILIVGCGNSAFSEGMVDD---G--YEDVVNVDISSVVIEAMMKKYS--NR--PQLKYIKMDVRQ-MDEFQTGSFDSVV 118 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~---~--~~~v~~~D~s~~~i~~~~~~~~--~~--~~~~~~~~d~~~-~~~~~~~~fD~v~ 118 (207)
..|.|..||+|.++....+. + ...++|.+..+.+...++.+.. .. ........|-.. ..-....+||.|+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~ 298 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVVV 298 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEEe
Confidence 48999999999988754431 2 1368999999999888887632 11 122333333322 2111245699999
Q ss_pred eCcchhhhc-cC-----------------CCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLL-CG-----------------SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~-~~-----------------~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
++.++.... .+ ......-..++..+...|++||...++-
T Consensus 299 ~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 299 SNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred ecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 887664311 01 0011234567777888999999755543
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=85.27 E-value=5.6 Score=32.00 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=54.7
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccc-ccc-cCCCCeeEEEeCc
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDE-FQTGSFDSVVDKG 121 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~-~~~-~~~~~fD~v~~~~ 121 (207)
.+||-.|+|. |..+..+++. |...++++|.+++..+.+++. .. ..++.. +..+ ... .....+|+|+...
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~---~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~ 243 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GA---TDIVDYKNGDVVEQILKLTGGKGVDAVIIAG 243 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC---ceEecCCCCCHHHHHHHHhCCCCCcEEEECC
Confidence 4888888763 5666666665 444689999988877777652 21 111111 1111 101 1234689888531
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.....+..+.+.|+++|.++...
T Consensus 244 -------------g~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 244 -------------GGQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred -------------CCHHHHHHHHHHhhcCCEEEEec
Confidence 11245778899999999988654
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=85.20 E-value=3.5 Score=33.85 Aligned_cols=102 Identities=12% Similarity=0.178 Sum_probs=55.7
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+|+-+|+|. |..+...+.. |. +|+.+|.+++..+.+...+.. .+.....+..++.. .-..+|+|+..-.+..
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~--~v~~~~~~~~~l~~-~l~~aDvVI~a~~~~g- 242 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG--RIHTRYSNAYEIED-AVKRADLLIGAVLIPG- 242 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc--eeEeccCCHHHHHH-HHccCCEEEEccccCC-
Confidence 4799999984 5555555554 55 899999998776666554422 11111111111111 1246899996421110
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
...+..+-++..+.++|+++++-+.+...
T Consensus 243 ------~~~p~lit~~~l~~mk~g~vIvDva~d~G 271 (370)
T TIGR00518 243 ------AKAPKLVSNSLVAQMKPGAVIVDVAIDQG 271 (370)
T ss_pred ------CCCCcCcCHHHHhcCCCCCEEEEEecCCC
Confidence 01111233556677899988776655433
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.18 E-value=5.3 Score=31.41 Aligned_cols=94 Identities=15% Similarity=0.232 Sum_probs=56.5
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-------CC------------CceEEEeccccccc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------RP------------QLKYIKMDVRQMDE 108 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-------~~------------~~~~~~~d~~~~~~ 108 (207)
+|.-||+|. +.++..+++.|+ +|+.+|.+++.++.+.++... .. ++. ...+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~~-- 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKAA-- 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHHh--
Confidence 678888874 345566667777 999999999988887653211 00 111 11122111
Q ss_pred cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 109 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
-...|+|+..-+ . +......++.++.+.++++.++...+
T Consensus 79 --~~~aD~Vi~avp-e-------~~~~k~~~~~~l~~~~~~~~il~~~t 117 (288)
T PRK09260 79 --VADADLVIEAVP-E-------KLELKKAVFETADAHAPAECYIATNT 117 (288)
T ss_pred --hcCCCEEEEecc-C-------CHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 234688885421 1 22345677788888888877665544
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=84.74 E-value=9 Score=25.23 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=54.3
Q ss_pred CCCchhhHHHHhc---CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc---ccCCCCeeEEEeCcchhhhccC
Q 028547 56 CGNSAFSEGMVDD---GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EFQTGSFDSVVDKGTLDSLLCG 129 (207)
Q Consensus 56 ~G~G~~~~~l~~~---~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~fD~v~~~~~l~~~~~~ 129 (207)
||.|.++..+++. +...++.+|.+++.++.+++. .+.++.+|..+.. ...-...+.+++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~------- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----GVEVIYGDATDPEVLERAGIEKADAVVILTD------- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----TSEEEES-TTSHHHHHHTTGGCESEEEEESS-------
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----ccccccccchhhhHHhhcCccccCEEEEccC-------
Confidence 3445566555543 223899999999998888765 4679999998852 123457887775311
Q ss_pred CCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 130 SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 130 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+.....+-...+.+.|...++...
T Consensus 72 ---~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 72 ---DDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp ---SHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ---CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 1333444445567777777776655
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.60 E-value=14 Score=28.95 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=53.1
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEE-Ee-ccccccccCCCCeeEEEeCcchhh
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYI-KM-DVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~-~~-d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+|+-+|+|. | .++..+++.|. +|+.++.+++.++..++.-.....-... .. -..+.. ....+|+|+..-.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~d~vila~k--- 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPA--ELGPQDLVILAVK--- 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChh--HcCCCCEEEEecc---
Confidence 578899886 3 45555666666 8999998776666555431100000000 00 011111 1257898885411
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
......+++.+...+.++..++...
T Consensus 76 -------~~~~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 76 -------AYQLPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred -------cccHHHHHHHHhhhcCCCCEEEEec
Confidence 1345778888888888776665543
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.41 E-value=14 Score=29.99 Aligned_cols=94 Identities=12% Similarity=0.173 Sum_probs=56.2
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE-e----cccc-ccccCCCCeeEEEe
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-M----DVRQ-MDEFQTGSFDSVVD 119 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~-~----d~~~-~~~~~~~~fD~v~~ 119 (207)
+.+||-.|+|. |..+..+++. |..+|+++|.+++.++.+++.-.. .++. . ++.+ ......+.+|+|+.
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~----~~i~~~~~~~~~~~~v~~~~~~g~d~vid 261 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT----DCVNPNDYDKPIQEVIVEITDGGVDYSFE 261 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC----eEEcccccchhHHHHHHHHhCCCCCEEEE
Confidence 34888888864 6666667665 444799999999888888653211 1111 0 1111 10112236898885
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEEe
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 158 (207)
.- .-...+....+.++++ |.+++...
T Consensus 262 ~~-------------G~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 262 CI-------------GNVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CC-------------CCHHHHHHHHHHhhcCCCeEEEEec
Confidence 31 1133567778889886 98887664
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.37 E-value=15 Score=28.25 Aligned_cols=68 Identities=21% Similarity=0.464 Sum_probs=41.8
Q ss_pred cEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeEE
Q 028547 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDSV 117 (207)
Q Consensus 50 ~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~v 117 (207)
++|-.|++.| .++..+++.|+ +|++++.+++.++.... .++.++.+|+.+.... ..+..|++
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~v 76 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAA-----AGFTAVQLDVNDGAALARLAEELEAEHGGLDVL 76 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-----CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 5677776543 33444555676 89999988766554432 2456777887764211 12468988
Q ss_pred EeCcch
Q 028547 118 VDKGTL 123 (207)
Q Consensus 118 ~~~~~l 123 (207)
+.+...
T Consensus 77 i~~ag~ 82 (274)
T PRK05693 77 INNAGY 82 (274)
T ss_pred EECCCC
Confidence 876543
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.37 E-value=17 Score=29.58 Aligned_cols=102 Identities=14% Similarity=0.218 Sum_probs=62.7
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe----ccccc-cccCCCCeeEEE
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM----DVRQM-DEFQTGSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~----d~~~~-~~~~~~~fD~v~ 118 (207)
+.+.+|.-+|||. |...+.-++. +...++++|+++..++.|++.-. ..++.. |+.+. ....+...|.++
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA----T~~vn~~~~~~vv~~i~~~T~gG~d~~~ 259 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA----THFVNPKEVDDVVEAIVELTDGGADYAF 259 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC----ceeecchhhhhHHHHHHHhcCCCCCEEE
Confidence 4445788888865 5555555543 45799999999999999987532 223322 22221 112334567665
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccc
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYR 164 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~ 164 (207)
-. . .....++.....+.++|..+++-...+..+
T Consensus 260 e~--~-----------G~~~~~~~al~~~~~~G~~v~iGv~~~~~~ 292 (366)
T COG1062 260 EC--V-----------GNVEVMRQALEATHRGGTSVIIGVAGAGQE 292 (366)
T ss_pred Ec--c-----------CCHHHHHHHHHHHhcCCeEEEEecCCCCce
Confidence 32 1 123367777778888999999887666543
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.19 E-value=5.8 Score=30.09 Aligned_cols=66 Identities=21% Similarity=0.377 Sum_probs=46.0
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHH-HccCCCCceEEEeccccc---cccCCCCeeEEEeC
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMK-KYSNRPQLKYIKMDVRQM---DEFQTGSFDSVVDK 120 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~-~~~~~~~~~~~~~d~~~~---~~~~~~~fD~v~~~ 120 (207)
+++-+|||. +.++..|.+.|. +|+.+|.+++.+..... . .....+++|..+. ....-..+|.+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~----~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADE----LDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhh----cceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 678889885 355556666777 99999999987776333 2 2567888888875 22345678888753
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.00 E-value=6.8 Score=29.85 Aligned_cols=72 Identities=21% Similarity=0.362 Sum_probs=45.3
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
+++|-.|+..| .++..+++.|+ +|++++-++...+...+..... ++.++..|+.+.... ...+.|.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 89 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGA-KVTATVADVADPAQVERVFDTAVERFGGLDV 89 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcC-ceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 48888887543 33344555677 8999998877666555444332 567788888875211 0146898
Q ss_pred EEeCcc
Q 028547 117 VVDKGT 122 (207)
Q Consensus 117 v~~~~~ 122 (207)
|+....
T Consensus 90 vi~~ag 95 (264)
T PRK12829 90 LVNNAG 95 (264)
T ss_pred EEECCC
Confidence 886543
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.90 E-value=6.5 Score=29.86 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=40.1
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQ 105 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~ 105 (207)
-|++||.|.|..+..+...+.+....+++++..+.-.+-..+.. ....+...|+..
T Consensus 53 ~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 53 YVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLR 109 (326)
T ss_pred eeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcceEEeccccce
Confidence 78999999999999999988789999999987665554433221 234444455443
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.75 E-value=14 Score=28.36 Aligned_cols=72 Identities=18% Similarity=0.325 Sum_probs=43.1
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
+++|-.|.+.| .+...++..|+ +|++++.+++.+....+.+.. ..++.++.+|+.+.... .....|
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~iD 88 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPID 88 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 37777776443 23344555676 899999887766554433322 13457778888764211 124679
Q ss_pred EEEeCc
Q 028547 116 SVVDKG 121 (207)
Q Consensus 116 ~v~~~~ 121 (207)
.++.+.
T Consensus 89 ~vi~~a 94 (264)
T PRK07576 89 VLVSGA 94 (264)
T ss_pred EEEECC
Confidence 988654
|
|
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=83.71 E-value=10 Score=30.23 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=54.0
Q ss_pred CCcEEEEcCCC-chhhHHHHh-c-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGN-SAFSEGMVD-D-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~-~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+.+||-.|+|. |..+..+++ . |...+++++.+++..+.+++.-... -+.....++.+...-....+|+|+...
T Consensus 161 g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~-~i~~~~~~~~~~~~~~g~~~d~vid~~--- 236 (339)
T PRK10083 161 QDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADW-VINNAQEPLGEALEEKGIKPTLIIDAA--- 236 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcE-EecCccccHHHHHhcCCCCCCEEEECC---
Confidence 34888888754 566666666 3 6656888998888887776532110 001111111111000112345666421
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....+....+.|+++|.++....
T Consensus 237 ----------g~~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 237 ----------CHPSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred ----------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 112357778899999999987654
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=83.57 E-value=15 Score=30.21 Aligned_cols=119 Identities=15% Similarity=0.220 Sum_probs=61.9
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCch----hhHHHHhc--CC-C-cEEEEeC----CHHHHHHHHHHccCC---CC--ceEE
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSA----FSEGMVDD--GY-E-DVVNVDI----SSVVIEAMMKKYSNR---PQ--LKYI 99 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~----~~~~l~~~--~~-~-~v~~~D~----s~~~i~~~~~~~~~~---~~--~~~~ 99 (207)
..+++.......-+|+|+|.|.|. +...++.+ |+ . ++|+++. +...++.+.+++... -+ .+|.
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 455555544444499999999993 44444443 22 2 8999998 777777777765421 12 3333
Q ss_pred Ee---cccccc--cc--CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 100 KM---DVRQMD--EF--QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 100 ~~---d~~~~~--~~--~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
.. ++.++. .+ ..+..=+|-+...+|++.........+...+-...+.|+|.-+.++
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 32 222221 11 1222223334445576642222223333444455567899744444
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.47 E-value=11 Score=30.58 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=54.5
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe--cccc-ccccCCCCeeEEEeCcc
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM--DVRQ-MDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~--d~~~-~~~~~~~~fD~v~~~~~ 122 (207)
+.+||-.|+|. |..+..+++. |...|++++.++...+.+++. ....-+..... ++.+ ........+|+|+..-
T Consensus 185 g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~- 262 (365)
T cd08277 185 GSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GATDFINPKDSDKPVSEVIREMTGGGVDYSFECT- 262 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCCcEeccccccchHHHHHHHHhCCCCCEEEECC-
Confidence 34888888754 5555556654 444799999998888887552 21000011110 0111 1111224689988531
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 158 (207)
.....+....+.++++ |.++....
T Consensus 263 ------------g~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 263 ------------GNADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred ------------CChHHHHHHHHhcccCCCEEEEEcC
Confidence 1123567778889885 99887654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.41 E-value=23 Score=29.64 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=57.5
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCce-----EEEeccccccccCCCCeeEEEeC
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLK-----YIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~-----~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
+|.-+|.|. +.++..+++.|+ +|+++|.+++.++..+...... +.+. .......... ...+..|+|+..
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~-~~~~~aDvvii~ 82 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT-TTPEPADAFLIA 82 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee-cccccCCEEEEE
Confidence 677788875 355566677787 9999999998887643211000 0000 0000000000 011246777753
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
-.-..-..+..........++.+.+.+++|.+++..+-..++
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg 124 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG 124 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 221100000112246667778889999988777665544443
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=83.41 E-value=13 Score=29.86 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=30.8
Q ss_pred CCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 028547 48 HQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMK 88 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~ 88 (207)
+.+||-.|+|. |..+..+++....+++++|.+++.++.+++
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 34899999965 666666666532379999999988888865
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=83.15 E-value=4.7 Score=33.16 Aligned_cols=113 Identities=10% Similarity=0.035 Sum_probs=69.1
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHH----------ccCC-CCceEEEecc
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKK----------YSNR-PQLKYIKMDV 103 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~----------~~~~-~~~~~~~~d~ 103 (207)
+..+++.+-..+.....|+|+|-|.+..+.+..+ ...-.|+++....-+.+..+ +... ..+.++++++
T Consensus 181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 4445554433333489999999999999888764 34667777665433333221 2221 3466777776
Q ss_pred ccccc--cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 104 RQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 104 ~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
....- .-....++|+++++... .+...-++++..-+++|-.++-.
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~Fd--------p~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVAFD--------PELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred CCHHHHHHHhhcceEEEEecccCC--------HHHHHhhHHHHhhCCCcceEecc
Confidence 66410 12345688888876553 44555556888888888777653
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.15 E-value=15 Score=28.78 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=56.8
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCH-HHHHHHHHHccC-CCCceEEEecccccccc---------CCCCe
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISS-VVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~-~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
+++|-.|++.| .++..+++.|. +|+.++.++ ...+.....+.. ..++.++.+|+.+.... .....
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~i 125 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGRL 125 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 37888887654 44455666777 888887654 222222222221 23577888888764211 01357
Q ss_pred eEEEeCcchhhhc--cCCCCh-----------hhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDKGTLDSLL--CGSNSR-----------QNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~~~l~~~~--~~~~~~-----------~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|.++.+....... ....+. ...-.+++.+.+.++++|.+++++
T Consensus 126 D~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 126 DILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 8888654322110 001111 123344455566667777777655
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.14 E-value=15 Score=28.96 Aligned_cols=94 Identities=19% Similarity=0.215 Sum_probs=50.8
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceE-EEeccc-cccccCCCCeeEEEeCcch
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKY-IKMDVR-QMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~-~~~d~~-~~~~~~~~~fD~v~~~~~l 123 (207)
+|+-+|+|. | .++..+++.|. +|+.++. ++.++..++.-.. ...... ...... +.. .....+|+|+..-.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~vilavk- 77 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPE-ELTGPFDLVILAVK- 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHH-HccCCCCEEEEEec-
Confidence 578888886 3 45556666666 8999988 6555555432100 000000 011111 111 11256898775311
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
......+++.+...+.++..++..
T Consensus 78 ---------~~~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 78 ---------AYQLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred ---------ccCHHHHHHHHHhhcCCCCEEEEe
Confidence 134577788888888887665544
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=83.09 E-value=21 Score=28.22 Aligned_cols=91 Identities=15% Similarity=0.215 Sum_probs=53.9
Q ss_pred CcEEEEcCC-CchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCG-NSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+||-.|+| .|..+..+++. |. ++++++.+++..+.+++. .. . .++...-........+.+|+++....
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~-g~--~-~~~~~~~~~~~~~~~~~~d~vi~~~~---- 234 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKL-GA--D-EVVDSGAELDEQAAAGGADVILVTVV---- 234 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh-CC--c-EEeccCCcchHHhccCCCCEEEECCC----
Confidence 378888886 46666666665 44 899999999888777542 21 0 11111100000001246898885311
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
....+..+.+.|+++|.++...
T Consensus 235 ---------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 ---------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ---------cHHHHHHHHHhcccCCEEEEEC
Confidence 1235677789999999988764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=82.93 E-value=11 Score=29.68 Aligned_cols=92 Identities=10% Similarity=0.112 Sum_probs=55.6
Q ss_pred CCcEEEEcC--CCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccc-ccccCCCCeeEEEeCc
Q 028547 48 HQRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEFQTGSFDSVVDKG 121 (207)
Q Consensus 48 ~~~vLdiG~--G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~-~~~~~~~~fD~v~~~~ 121 (207)
+.+||-.|+ +.|..+..+++....++++++.+++..+.+++ +.. -.++.. ++.+ ........+|+|+..
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~Ga---~~vi~~~~~~~~~~v~~~~~~gvd~vld~- 218 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-LGF---DAVFNYKTVSLEEALKEAAPDGIDCYFDN- 218 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC---CEEEeCCCccHHHHHHHHCCCCcEEEEEC-
Confidence 348888774 45777777777533389999988888888766 321 112211 1111 111123568988853
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. . ...++...+.|+++|.++...
T Consensus 219 ----~--------g-~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 219 ----V--------G-GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred ----C--------C-HHHHHHHHHhhccCCEEEEEc
Confidence 1 1 135678899999999987654
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.93 E-value=18 Score=29.11 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=47.1
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++||-.|++.| .++..+++.|+ +|+.++-+++.++...+.+.. ..++.++.+|+.+.... .-+..|
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD 87 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPID 87 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCCC
Confidence 37788887655 33445566777 899999888776665554432 24577888888775211 124689
Q ss_pred EEEeCcc
Q 028547 116 SVVDKGT 122 (207)
Q Consensus 116 ~v~~~~~ 122 (207)
+++.+..
T Consensus 88 ~lInnAg 94 (334)
T PRK07109 88 TWVNNAM 94 (334)
T ss_pred EEEECCC
Confidence 8887654
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=82.69 E-value=15 Score=28.22 Aligned_cols=90 Identities=22% Similarity=0.295 Sum_probs=53.3
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+||-.|+|. |..+..+++. |...+++++.+++..+.+++.-.. .. +... .+. ......+|+|+....
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~-~~--~~~~--~~~-~~~~~~~d~vl~~~~---- 168 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA-DP--VAAD--TAD-EIGGRGADVVIEASG---- 168 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC-cc--cccc--chh-hhcCCCCCEEEEccC----
Confidence 4788888765 5666666664 442399999888887766653200 01 1110 000 012346898885311
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
....+....+.|+++|.++...
T Consensus 169 ---------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 ---------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ---------ChHHHHHHHHHhcCCcEEEEEe
Confidence 1235677788999999988654
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.69 E-value=16 Score=28.60 Aligned_cols=93 Identities=18% Similarity=0.327 Sum_probs=57.1
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-------CCC------------CceEEEeccccccc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------NRP------------QLKYIKMDVRQMDE 108 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-------~~~------------~~~~~~~d~~~~~~ 108 (207)
+|--+|+|. +.++..++..|+ +|+++|.+++.++.+++++. ... ++.+ ..|..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~---- 78 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD---- 78 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH----
Confidence 577788884 566677777777 99999999998865443211 100 1111 12221
Q ss_pred cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 109 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.....|+|+..- .. ...-...+++++.+.++++.++...+
T Consensus 79 -~~~~aDlVi~av-~e-------~~~~k~~~~~~l~~~~~~~~il~s~t 118 (282)
T PRK05808 79 -DLKDADLVIEAA-TE-------NMDLKKKIFAQLDEIAKPEAILATNT 118 (282)
T ss_pred -HhccCCeeeecc-cc-------cHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 124568888541 11 12445688999999999988774434
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.39 E-value=19 Score=29.12 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=52.7
Q ss_pred CCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEE-eccccccccCCCCeeEEEeCcchhh
Q 028547 48 HQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK-MDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+.+||-.|+|. |..+..+++....++++++.+++....+.+.+.. . .++. .+...... ....+|+|+..-
T Consensus 181 g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga--~-~~i~~~~~~~~~~-~~~~~D~vid~~---- 252 (357)
T PLN02514 181 GLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGA--D-DYLVSSDAAEMQE-AADSLDYIIDTV---- 252 (357)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCC--c-EEecCCChHHHHH-hcCCCcEEEECC----
Confidence 34777777754 6666666665323788888777666555544432 1 1111 11111111 112578888531
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....++.+.+.|+++|.++....
T Consensus 253 ---------g~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 253 ---------PVFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---------CchHHHHHHHHHhccCCEEEEECC
Confidence 112356777889999999887653
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=82.20 E-value=15 Score=29.13 Aligned_cols=92 Identities=14% Similarity=0.200 Sum_probs=54.4
Q ss_pred CcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc---cccCCCCeeEEEeCcch
Q 028547 49 QRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM---DEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~fD~v~~~~~l 123 (207)
.+||-.|+|. |..+..+++. |...+++++.+++..+.+++.-.. .++..+-.+. .......+|+++....
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~vd~v~~~~~- 235 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT----ETVDPSREDPEAQKEDNPYGFDVVIEATG- 235 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe----EEecCCCCCHHHHHHhcCCCCcEEEECCC-
Confidence 4888888653 5566666665 342388888888887777543211 1221111110 0113456899985311
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
....+..+.+.|+++|.++...
T Consensus 236 ------------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 236 ------------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred ------------ChHHHHHHHHHHhcCCEEEEEe
Confidence 1345777789999999988754
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.08 E-value=14 Score=29.79 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=59.3
Q ss_pred CcEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-------C--------CCceEEEeccccccccCC
Q 028547 49 QRILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-------R--------PQLKYIKMDVRQMDEFQT 111 (207)
Q Consensus 49 ~~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-------~--------~~~~~~~~d~~~~~~~~~ 111 (207)
++|--||+|+ ..++..++..|+ +|+..|.+++.++.+..++.. . .++.+. .++.+ .-
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~----av 81 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA----CV 81 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH----Hh
Confidence 3788899985 456666777788 999999999877765543220 0 111211 12111 12
Q ss_pred CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
...|+|+-. +... .+-...++.++.+.++|+.++.-.+
T Consensus 82 ~~aDlViEa-vpE~-------l~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 82 ADADFIQES-APER-------EALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred cCCCEEEEC-CcCC-------HHHHHHHHHHHHHhCCCCeEEEECC
Confidence 356888864 2332 3667788899999999987544444
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=81.71 E-value=8.2 Score=27.33 Aligned_cols=92 Identities=23% Similarity=0.296 Sum_probs=55.2
Q ss_pred cEEEEcCCCc--hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---CC------CceEEEeccccccccCCCCeeEEE
Q 028547 50 RILIVGCGNS--AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RP------QLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 50 ~vLdiG~G~G--~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~~------~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
+|.-+|+|.+ .++..++..+. +|+....+++.++..++.-.. .+ ++.+ ..|+.+. -+..|+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a----~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEA----LEDADIII 74 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHH----HTT-SEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHH----hCcccEEE
Confidence 3566888875 34445566665 999999999888877765331 11 2222 2333332 13568888
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..-+- .....+++++...++++-.++...
T Consensus 75 iavPs----------~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 75 IAVPS----------QAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp E-S-G----------GGHHHHHHHHTTTSHTT-EEEETS
T ss_pred ecccH----------HHHHHHHHHHhhccCCCCEEEEec
Confidence 64222 455889999999997766666543
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=81.65 E-value=16 Score=28.90 Aligned_cols=92 Identities=10% Similarity=0.066 Sum_probs=56.0
Q ss_pred CCcEEEEcC--CCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe----ccccc-cccCCCCeeEEEeC
Q 028547 48 HQRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM----DVRQM-DEFQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~--G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~----d~~~~-~~~~~~~fD~v~~~ 120 (207)
+.+||-.|+ |.|..+..+++....++++++.+++..+.+++ +.. -.++.. +..+. .....+.+|+|+..
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-lGa---~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~ 214 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-LGF---DVAFNYKTVKSLEETLKKASPDGYDCYFDN 214 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC---CEEEeccccccHHHHHHHhCCCCeEEEEEC
Confidence 348888884 45777777777633389999988888777754 321 111111 11111 11123468998853
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
- . ...+....++|+++|.++...
T Consensus 215 ~--G------------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 215 V--G------------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred C--C------------HHHHHHHHHHhCcCcEEEEec
Confidence 1 1 123577889999999998754
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.63 E-value=17 Score=28.59 Aligned_cols=93 Identities=18% Similarity=0.326 Sum_probs=56.1
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc--------CC-----------CCceEEEeccccccc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--------NR-----------PQLKYIKMDVRQMDE 108 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~--------~~-----------~~~~~~~~d~~~~~~ 108 (207)
+|.-||+|. +.++..++..|. +|+.+|.+++.++.+.++.. .. .++.+ ..+...
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--- 80 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED--- 80 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH---
Confidence 688888885 355566677777 99999999988877543221 00 01111 122211
Q ss_pred cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 109 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
-...|+|+..- .. .......+++.+...++++.+++..+
T Consensus 81 --~~~aD~Vieav-pe-------~~~~k~~~~~~l~~~~~~~~ii~s~t 119 (292)
T PRK07530 81 --LADCDLVIEAA-TE-------DETVKRKIFAQLCPVLKPEAILATNT 119 (292)
T ss_pred --hcCCCEEEEcC-cC-------CHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 23568888641 11 12345677888999999987765433
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=81.61 E-value=9.4 Score=26.53 Aligned_cols=95 Identities=20% Similarity=0.218 Sum_probs=52.5
Q ss_pred EEEEcCCC-chh-hHHHHhcCCCcEEEEeCCHHHHHHHHHHcc---CCC-CceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 51 ILIVGCGN-SAF-SEGMVDDGYEDVVNVDISSVVIEAMMKKYS---NRP-QLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 51 vLdiG~G~-G~~-~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~---~~~-~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
|+-+|+|. |.+ +..|.+.+. +|+.+.-.+ .++..++.-- ... +..+...............+|+|+..-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v--- 75 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV--- 75 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S---
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe---
Confidence 46677775 443 344445556 999999877 5555444311 101 111111111111012457899998641
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
...+....++.+.+.+.++..+++..
T Consensus 76 -------Ka~~~~~~l~~l~~~~~~~t~iv~~q 101 (151)
T PF02558_consen 76 -------KAYQLEQALQSLKPYLDPNTTIVSLQ 101 (151)
T ss_dssp -------SGGGHHHHHHHHCTGEETTEEEEEES
T ss_pred -------cccchHHHHHHHhhccCCCcEEEEEe
Confidence 11466778899999999997766544
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=81.48 E-value=27 Score=28.35 Aligned_cols=94 Identities=13% Similarity=0.247 Sum_probs=55.7
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe-----cccc-ccccCCCCeeEEEe
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-----DVRQ-MDEFQTGSFDSVVD 119 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~-----d~~~-~~~~~~~~fD~v~~ 119 (207)
+.+||-.|+|. |.++..+++. |...++++|.+++.++.+++ +.. -.++.. ++.+ ......+.+|+|+.
T Consensus 187 g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~-lGa---~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 262 (368)
T cd08300 187 GSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK-FGA---TDCVNPKDHDKPIQQVLVEMTDGGVDYTFE 262 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCC---CEEEcccccchHHHHHHHHHhCCCCcEEEE
Confidence 34888888754 5666666665 44469999999988887754 321 111211 1111 10112236899885
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEEe
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 158 (207)
.- .-...+....+.|+++ |.++....
T Consensus 263 ~~-------------g~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 263 CI-------------GNVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CC-------------CChHHHHHHHHhhccCCCeEEEEcc
Confidence 31 1123567778899887 98887654
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.42 E-value=21 Score=26.93 Aligned_cols=108 Identities=11% Similarity=0.123 Sum_probs=55.8
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCH-HHHHHHHHHccC-CCCceEEEecccccccc---------CCCCe
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISS-VVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~-~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
+++|-.|+..| .+...+++.|+ +|++++-+. ...+.....+.. ..++.++.+|+.+.... .-+..
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 85 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGGL 85 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 47888887544 23344455666 788876543 223322222221 13567788888875211 01357
Q ss_pred eEEEeCcchhhhccC------CCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDKGTLDSLLCG------SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~~~l~~~~~~------~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|.++.+......... ..+......+++.+.+.++.+|.+++++
T Consensus 86 d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 86 DALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred cEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 887765432110000 0011234566677777776667766654
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=81.24 E-value=3.8 Score=28.75 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=24.4
Q ss_pred EEcCCCc--hhhHHHH--hcCC-CcEEEEeCCHHHHHHHHHH
Q 028547 53 IVGCGNS--AFSEGMV--DDGY-EDVVNVDISSVVIEAMMKK 89 (207)
Q Consensus 53 diG~G~G--~~~~~l~--~~~~-~~v~~~D~s~~~i~~~~~~ 89 (207)
|+|++.| .....+. ..+. ..++++|+++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555543 3333 4899999999999888888
|
; PDB: 2PY6_A. |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=81.01 E-value=18 Score=30.08 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=63.5
Q ss_pred CcEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc----------c----cccCCC
Q 028547 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ----------M----DEFQTG 112 (207)
Q Consensus 49 ~~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~----------~----~~~~~~ 112 (207)
.+|--+|-|- | -++..++..|+ +|+|+|+++..++...+-- .....-+... + ++....
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G~-----~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~ 83 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRGE-----SYIEEPDLDEVVKEAVESGKLRATTDPEELK 83 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCCc-----ceeecCcHHHHHHHHHhcCCceEecChhhcc
Confidence 4777777664 3 34455666777 9999999998887765421 1111111111 0 000111
Q ss_pred CeeEEE-eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccc
Q 028547 113 SFDSVV-DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLG 166 (207)
Q Consensus 113 ~fD~v~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~ 166 (207)
.-|+++ +..+.-.- ....+........+.+.+.|++|-.+++.+-..|+....
T Consensus 84 ~~dv~iI~VPTPl~~-~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~ 137 (436)
T COG0677 84 ECDVFIICVPTPLKK-YREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEE 137 (436)
T ss_pred cCCEEEEEecCCcCC-CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHH
Confidence 345433 33222110 233455678899999999999988888876555554444
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.70 E-value=6.3 Score=29.95 Aligned_cols=73 Identities=15% Similarity=0.290 Sum_probs=47.3
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++||-.|++.| .++..+++.|+ +|++++.++...+...+.... ..++.++..|+.+.... .-+..|
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~d 84 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRVD 84 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCcc
Confidence 37888887655 44555666777 899999888766555544332 24578888888764211 114679
Q ss_pred EEEeCcc
Q 028547 116 SVVDKGT 122 (207)
Q Consensus 116 ~v~~~~~ 122 (207)
.|+.+..
T Consensus 85 ~vi~~ag 91 (258)
T PRK07890 85 ALVNNAF 91 (258)
T ss_pred EEEECCc
Confidence 8887653
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.67 E-value=6.6 Score=29.84 Aligned_cols=72 Identities=19% Similarity=0.383 Sum_probs=45.6
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
+++|-.|++.| .++..+++.|. +|++++-++...+...+.+.. ..++.++.+|+.+.... .-+..|
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID 80 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence 36787887665 34455566677 899999887666555544332 14677888888764211 124679
Q ss_pred EEEeCc
Q 028547 116 SVVDKG 121 (207)
Q Consensus 116 ~v~~~~ 121 (207)
.++.+.
T Consensus 81 ~lI~~a 86 (252)
T PRK07677 81 ALINNA 86 (252)
T ss_pred EEEECC
Confidence 888654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 207 | ||||
| 2pxx_A | 215 | Human Putative Methyltransferase Mgc2408 Length = 2 | 1e-22 |
| >pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408 Length = 215 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 171 bits (434), Expect = 4e-54
Identities = 70/186 (37%), Positives = 101/186 (54%), Gaps = 13/186 (6%)
Query: 9 AYGEPWYWDNRYAHE--SGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMV 66
Y E YWD RY S P+DW+ + S L++ + RIL++GCGNSA S +
Sbjct: 3 GYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPE-DRILVLGCGNSALSYELF 61
Query: 67 DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126
G+ +V +VD SSVV+ AM Y++ PQL++ MDVR++D F + SFD V++KGTLD+L
Sbjct: 62 LGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD-FPSASFDVVLEKGTLDAL 120
Query: 127 LCG--------SNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML-RDSCSWNIK 177
L G S Q+L EV RVL G +I +T AP +R + W+++
Sbjct: 121 LAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSLR 180
Query: 178 LHVIEK 183
Sbjct: 181 HATYGS 186
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 2e-15
Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 10/155 (6%)
Query: 12 EPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYE 71
P + +N A LI P +IL GCG + G+
Sbjct: 12 NPAHSENYAQRWRNLAAAGNDIYGEARLIDAMAP-RGAKILDAGCGQGRIGGYLSKQGH- 69
Query: 72 DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSN 131
DV+ D+ ++I+ + + P+ +++ D+ FD +V G + L
Sbjct: 70 DVLGTDLDPILIDYAKQDF---PEARWVVGDLSVDQ-ISETDFDLIVSAGNVMGFL---- 121
Query: 132 SRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLG 166
+ L + R L G ++ + G
Sbjct: 122 AEDGREPALANIHRALGADGRAVIGFGAGRGWVFG 156
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 5e-14
Identities = 36/153 (23%), Positives = 56/153 (36%), Gaps = 18/153 (11%)
Query: 12 EPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSH---HQRILIVGCGNSAFSEGMVDD 68
E W+ + E P W Q + PLI V + R L+ GCG M
Sbjct: 32 EEGGWEKCWEEEITP--WDQGRAT--PLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASP 87
Query: 69 GYEDVVNVDISSVVIEAMMKKYSNRPQ---LKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125
VV +DIS + + Y + P+ ++K DV T FD + D +
Sbjct: 88 ER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP--TELFDLIFDYVFFCA 144
Query: 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
+ + K ++ +LK G I + Y
Sbjct: 145 I-----EPEMRPAWAKSMYELLKPDGELITLMY 172
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 1e-13
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 11/147 (7%)
Query: 15 YWDNRYA--HESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYED 72
+ + + ++ + +L PL+ Y+ ++L + CG FS + D G+E
Sbjct: 5 EYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKR-GKVLDLACGVGGFSFLLEDYGFE- 62
Query: 73 VVNVDISSVVIE-AMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSN 131
VV VDIS +I A S +++I D R++ F+ +FD V+ ++
Sbjct: 63 VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS-FEDKTFDYVIFIDSIVHF----- 116
Query: 132 SRQNATQMLKEVWRVLKDKGVYILVTY 158
Q+ KEV RVLK G +I+
Sbjct: 117 EPLELNQVFKEVRRVLKPSGKFIMYFT 143
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 3e-13
Identities = 26/170 (15%), Positives = 68/170 (40%), Gaps = 13/170 (7%)
Query: 1 MTMGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSA 60
M++ Y + +++ +Y+ + + L K+ + + +L +GCG
Sbjct: 1 MSL--KENKYDDKHFFE-QYSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGW 57
Query: 61 FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120
+ G + V+ +D+S ++ K+ + P + Y + + + + +++ V+
Sbjct: 58 HCIYAAEHGAKKVLGIDLSERMLTE-AKRKTTSPVVCYEQKAIEDI-AIEPDAYNVVLSS 115
Query: 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRD 170
L + + + K+V+ LK G +I P++ +D
Sbjct: 116 LALHYI-------ASFDDICKKVYINLKSSGSFIFSV-EHPVFTADGRQD 157
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 3e-13
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 20/153 (13%)
Query: 15 YWDNR---YAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYE 71
WD+ + S ++ P + YV +L VGCG+ + + GY+
Sbjct: 19 KWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKE-AEVLDVGCGDGYGTYKLSRTGYK 77
Query: 72 DVVNVDISSVVIEAMM---KKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128
V VDIS E M+ K+ P L +IK D+ + F+ F++++ +L+
Sbjct: 78 -AVGVDIS----EVMIQKGKERGEGPDLSFIKGDLSSLP-FENEQFEAIMAINSLEWT-- 129
Query: 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161
+ + L E+ RVLK G + G
Sbjct: 130 -----EEPLRALNEIKRVLKSDGYACIAILGPT 157
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 3e-13
Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 15/167 (8%)
Query: 29 WYQKYPSLAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE-AM 86
+ P L +K S+ + +L G G + + ++IS + ++ A
Sbjct: 4 TIIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAE 63
Query: 87 MKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRV 146
N +L K D+R++ F+ S V GT+ + + + + + E+ RV
Sbjct: 64 NFSRENNFKLNISKGDIRKLP-FKDESMSFVYSYGTIFHM-----RKNDVKEAIDEIKRV 117
Query: 147 LKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVIEKLVVEEKSGHP 193
LK G+ + R K+ E L +E
Sbjct: 118 LKPGGLACINFLTTKDERYNK-------GEKIGEGEFLQLERGEKVI 157
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 1e-12
Identities = 19/157 (12%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 5 TTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEG 64
++AY G LI+ + IL VG G ++
Sbjct: 4 DVSKAYSS---PTFDAEALLG--TVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGH 58
Query: 65 MVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124
+ G+ + ++ ++ ++E + + P + + + + + ++
Sbjct: 59 LASLGH-QIEGLEPATRLVELARQTH---PSVTFHHGTITDLS-DSPKRWAGLL---AWY 110
Query: 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161
SL+ L + ++D G ++ + P
Sbjct: 111 SLIHMGPGELPD--ALVALRMAVEDGGGLLMSFFSGP 145
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 2e-12
Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 16/146 (10%)
Query: 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDV 73
Y+D Y + + + K +R+L + CG + + + GY +V
Sbjct: 10 EYYDTIYRRRIERVKAEIDF--VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EV 66
Query: 74 VNVDISSVVIE-AMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGS-- 130
V +D+ ++ A K ++++++ DV ++ FD+V + +
Sbjct: 67 VGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF--KNEFDAVT-------MFFSTIM 117
Query: 131 -NSRQNATQMLKEVWRVLKDKGVYIL 155
++ ++ +V LK GV+I
Sbjct: 118 YFDEEDLRKLFSKVAEALKPGGVFIT 143
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 3e-12
Identities = 35/197 (17%), Positives = 70/197 (35%), Gaps = 31/197 (15%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVV 74
D Y + ++ + + + +K+ P + L +GCGN S + +GY DV
Sbjct: 5 IRDENYFTD--KYELTRTHSEVLEAVKVVKP---GKTLDLGCGNGRNSLYLAANGY-DVD 58
Query: 75 NVDISSVVIE--AMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNS 132
D +++ I +K N L +D+ + +D ++ L L
Sbjct: 59 AWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF--DRQYDFILSTVVLMFL-----E 111
Query: 133 RQNATQMLKEVWRVLKDKGVYILVTY-----------GAPIYRLGMLRDSCS-WNIKLHV 180
+ ++ + R K G ++V ++ G LR W +
Sbjct: 112 AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWER-VKY 170
Query: 181 IE---KLVVEEKSGHPI 194
E +L + +G+ I
Sbjct: 171 NEDVGELHRTDANGNRI 187
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 8e-12
Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 13/155 (8%)
Query: 13 PWYWDNRYAH--ESGPFDWYQKYPSLAPLIKLYVPSH-HQRILIVGCGNSAFSEGMVDDG 69
Y D A + D + + + H R+L V CG S +V++G
Sbjct: 20 DQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG 79
Query: 70 YEDVVNVDISSVVIE-AMMKKYSNRPQLKYIKMDVRQMDEFQ-------TGSFDSVVDKG 121
+ V +VD S +++ A+ ++++ R + + K + + + FD+V+ G
Sbjct: 80 F-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLG 138
Query: 122 T-LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155
L + LK + +++ G+ ++
Sbjct: 139 NSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 173
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 4e-11
Identities = 25/200 (12%), Positives = 61/200 (30%), Gaps = 29/200 (14%)
Query: 15 YWD-NRYAHESGPFD----WYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG 69
Y R P+ +++ L L +GC AF+E +
Sbjct: 14 YQSLERELANDDPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC 73
Query: 70 YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCG 129
+ + +D+ I ++ + + D+ + FD +V + +L
Sbjct: 74 -KRLTVIDVMPRAIGRACQRTKRWSHISWAATDI--LQFSTAELFDLIV----VAEVLYY 126
Query: 130 SNSRQNATQMLKEVWRVLKDKGVYILVT--------YGAPI---YRLGMLRDSCSWNIKL 178
+ + ++L G + + +G + +L ++ L
Sbjct: 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILTEA------L 180
Query: 179 HVIEKLVVEEKSGHPIWELT 198
+E++ + +S L
Sbjct: 181 TEVERVQCQGQSADEDCLLA 200
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 5e-11
Identities = 26/178 (14%), Positives = 54/178 (30%), Gaps = 11/178 (6%)
Query: 15 YWDNRYAHESGPFDWYQKYPSL-----APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG 69
YW A SG + I R L G G ++ ++
Sbjct: 56 YWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL 115
Query: 70 YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCG 129
Y ++ ++E ++ + P K+I + ++D +V + T L
Sbjct: 116 YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT-LPPNTYDLIVIQWTAIYL--- 171
Query: 130 SNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVIEKLVVE 187
+ + + K + L G + R + ++ S ++L E
Sbjct: 172 --TDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNE 227
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 6e-11
Identities = 28/148 (18%), Positives = 61/148 (41%), Gaps = 13/148 (8%)
Query: 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE 108
R+L +G G +S + + G+E VV VD S + M++ + ++ +
Sbjct: 56 CRVLDLGGGTGKWSLFLQERGFE-VVLVDPS----KEMLEVAREKGVKNVVEAKAEDL-P 109
Query: 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML 168
F +G+F++V+ G + S + +N + E+ RVL G ++ T L +
Sbjct: 110 FPSGAFEAVLALGDVLSYV------ENKDKAFSEIRRVLVPDG-LLIATVDNFYTFLQQM 162
Query: 169 RDSCSWNIKLHVIEKLVVEEKSGHPIWE 196
+ +W+ ++ + +
Sbjct: 163 IEKDAWDQITRFLKTQTTSVGTTLFSFN 190
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 8e-11
Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 26/165 (15%)
Query: 1 MTMGTTTQAYGEPWY------WDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIV 54
M + T + +D + + + LA L++ + P +L V
Sbjct: 1 MAHSSATAGPQADYSGEIAELYDLVHQGKGKDYHREAAD--LAALVRRHSP-KAASLLDV 57
Query: 55 GCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114
CG + D V +++S+ ++ ++ P D+R + F
Sbjct: 58 ACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRN---PDAVLHHGDMRDFSLGRR--F 111
Query: 115 DSVVDKGTLDSLLCGS----NSRQNATQMLKEVWRVLKDKGVYIL 155
+V + S + L+ + GV ++
Sbjct: 112 SAVT-------CMFSSIGHLAGQAELDAALERFAAHVLPDGVVVV 149
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 1e-10
Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 12/141 (8%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVV 74
+D Y + +A L++ P +L V CG E + D
Sbjct: 11 VYDLFYLGRGKDYAAEASD--IADLVRSRTP-EASSLLDVACGTGTHLEHFTKEFG-DTA 66
Query: 75 NVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ 134
+++S ++ K+ P + D+R + F +VV S+ + +
Sbjct: 67 GLELSEDMLTHARKRL---PDATLHQGDMRDFRLGRK--FSAVVS--MFSSVGY-LKTTE 118
Query: 135 NATQMLKEVWRVLKDKGVYIL 155
+ L+ GV ++
Sbjct: 119 ELGAAVASFAEHLEPGGVVVV 139
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 3e-10
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKL--YVPSHHQRILIVGCGNSAFSEGMVDDGYED 72
++ + ++ P A L K +P+ +IL +GCG +E M+ G+ D
Sbjct: 16 FYRGNAT------AYAERQPRSATLTKFLGELPAG-AKILELGCGAGYQAEAMLAAGF-D 67
Query: 73 VVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNS 132
V D S + + S R M Q+D ++D+V L +
Sbjct: 68 VDATDGS----PELAAEASRRLGRPVRTMLFHQLDA--IDAYDAVWAHACLLHV-----P 116
Query: 133 RQNATQMLKEVWRVLKDKGVYIL 155
R +LK +WR LK G++
Sbjct: 117 RDELADVLKLIWRALKPGGLFYA 139
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 3e-10
Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 17/142 (11%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVV 74
D Y S D+ + L + CG +E + +
Sbjct: 15 RADVDYKKWS---DFIIE------KCVENNL-VFDDYLDLACGTGNLTENLCPKFK-NTW 63
Query: 75 NVDISSVVIE-AMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSR 133
VD+S ++ A K S + + D+ ++ + FD +
Sbjct: 64 AVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRK--FDLIT---CCLDSTNYIIDS 118
Query: 134 QNATQMLKEVWRVLKDKGVYIL 155
+ + K V LK+ GV+I
Sbjct: 119 DDLKKYFKAVSNHLKEGGVFIF 140
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 5e-10
Identities = 21/147 (14%), Positives = 57/147 (38%), Gaps = 13/147 (8%)
Query: 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDV 73
+ + Y G + ++ + + ++L +G G + +
Sbjct: 29 FIFGENYISSGG-------LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHT 81
Query: 74 VNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSR 133
+DI S ++ ++ S ++ + D+ + F +FD + + + +L S
Sbjct: 82 HGIDICSNIVNMANERVSGNNKIIFEANDILTKE-FPENNFDLIYSRDAILAL-----SL 135
Query: 134 QNATQMLKEVWRVLKDKGVYILVTYGA 160
+N ++ ++ ++ LK G ++ Y A
Sbjct: 136 ENKNKLFQKCYKWLKPTGTLLITDYCA 162
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 7e-10
Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 8/140 (5%)
Query: 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQ 95
LI+LY +L +GCG G + VDI+ V I + N R +
Sbjct: 57 LIRLYTK-RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFK 115
Query: 96 LKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155
+ + D FD + + S ++ ++ + + R L+ G +I+
Sbjct: 116 VFFRAQDSYGRHMDLGKEFDVIS---SQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172
Query: 156 VTYGAPIYRLGMLRDSCSWN 175
L + N
Sbjct: 173 TVPS-RDVILERYKQGRMSN 191
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 9e-10
Identities = 17/148 (11%), Positives = 43/148 (29%), Gaps = 12/148 (8%)
Query: 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDV 73
+D+ E + + + +++ V +L G G + ++ G V
Sbjct: 14 HTYDSFVQGEDIQYK--EVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRT-V 70
Query: 74 VNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSR 133
++ S + +K + D + S D++V L +
Sbjct: 71 YGIEPSREMRMIAKEKLPKE--FSITEGDFLSFE--VPTSIDTIVSTYAFHHL-----TD 121
Query: 134 QNATQMLKEVWRVLKDKGVYILVTYGAP 161
+ + ++L G +
Sbjct: 122 DEKNVAIAKYSQLLNKGGKIVFADTIFA 149
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 2e-09
Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 21/147 (14%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYE-DV 73
R ++G + + ++ ++ + +L +GCG ++ D E
Sbjct: 55 MQARRAFLDAGHYQPLR--DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITT 112
Query: 74 VNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSR 133
+D+S V I+A K+Y PQ+ + ++ F S D+++ + +
Sbjct: 113 FGLDVSKVAIKAAAKRY---PQVTFCVASSHRLP-FSDTSMDAIIR---IYAP------- 158
Query: 134 QNATQMLKEVWRVLKDKGVYILVTYGA 160
+E+ RV+K G I T G
Sbjct: 159 ----CKAEELARVVKPGGWVITATPGP 181
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-09
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 25/141 (17%)
Query: 30 YQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKK 89
+ +I L I +G G +S + + G V V+ S M ++
Sbjct: 17 VPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLF-VYAVEPS----IVMRQQ 71
Query: 90 YSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ------NATQMLKEV 143
PQ+++ + S D V+ S + + +E+
Sbjct: 72 AVVHPQVEWFTGYAENLA-LPDKSVDGVI-------------SILAIHHFSHLEKSFQEM 117
Query: 144 WRVLKDKGVYILVTYGAPIYR 164
R+++D + +L R
Sbjct: 118 QRIIRDGTIVLLTFDIRLAQR 138
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 3e-09
Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLK 97
+ V + + IL +G G S +++ E VD+S ++E ++ ++K
Sbjct: 36 VSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVK 95
Query: 98 YIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSN-SRQNATQMLKEVWRVLKDKGVYILV 156
YI+ D + D +D VV S L + ++ ++ K + +LK+ G++I
Sbjct: 96 YIEADYSKYDF--EEKYDMVV------SALSIHHLEDEDKKELYKRSYSILKESGIFINA 147
Query: 157 TYGAP 161
Sbjct: 148 DLVHG 152
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 4e-09
Identities = 19/162 (11%), Positives = 45/162 (27%), Gaps = 20/162 (12%)
Query: 3 MGTTTQAYGEPWYWDNRYAHE-SGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAF 61
M + ++Y Y H + + + + R+L GCG+
Sbjct: 4 MNHSRESYDRLARELGGYRHPWARVLSGPDPELTFDLWLSRLLTPQ-TRVLEAGCGHGPD 62
Query: 62 SEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGS-FDSVVDK 120
+ D S +++ P + + + G+ F +V
Sbjct: 63 AARFGPQAAR-WAAYDFSPELLKLARANA---PHADVYEWNGKGELPAGLGAPFGLIV-- 116
Query: 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162
SR+ T ++ + + ++ V +
Sbjct: 117 -----------SRRGPTSVILRLPELAAPDAHFLYVGPRLNV 147
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 1e-08
Identities = 22/154 (14%), Positives = 51/154 (33%), Gaps = 15/154 (9%)
Query: 15 YWDNRYAHESGPFDW----YQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY 70
YW+ + S P W + P +L ++ CGN ++ +
Sbjct: 22 YWN-KTLVNSTPVLWDANVERAVVVDLPRFELLFN-PELPLIDFACGNGTQTKFLSQFFP 79
Query: 71 EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EFQTGSFDSVVDKGTLDSLL 127
V+ +D+S +E K+ + + Y +D + + + D+ +
Sbjct: 80 R-VIGLDVSKSALEIAAKENT-AANISYRLLDGLVPEQAAQIHSEIGDANI----YMRTG 133
Query: 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161
+ + + + +L +G L+ G
Sbjct: 134 FHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG 167
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 1e-08
Identities = 22/159 (13%), Positives = 47/159 (29%), Gaps = 18/159 (11%)
Query: 15 YWDNRYAHESGPFDWYQKYPS---------LAPLIKLYVPS-HHQRILIVGCGNSAFSEG 64
YW G Y S L ++ L G G ++
Sbjct: 37 YWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKR 96
Query: 65 MVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122
++ + +V VDI+ + Y ++ + S+D + +
Sbjct: 97 LLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-PEPDSYDVIWIQWV 155
Query: 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161
+ L + Q+ + L+ L+ G+ ++ A
Sbjct: 156 IGHL-----TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ 189
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-08
Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 11/129 (8%)
Query: 30 YQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE-AMMK 88
L + RI+ +GCG F + G V+ +D+S ++ A +
Sbjct: 26 LDGAAEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARA--R 83
Query: 89 KYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLK 148
+ Y + D+ ++ SFD L + ++ ++ + V + L
Sbjct: 84 AAGPDTGITYERADLDKL-HLPQDSFDLAYSSLALHYV-------EDVARLFRTVHQALS 135
Query: 149 DKGVYILVT 157
G ++ T
Sbjct: 136 PGGHFVFST 144
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Length = 252 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 2e-08
Identities = 25/172 (14%), Positives = 53/172 (30%), Gaps = 26/172 (15%)
Query: 15 YWDNRYAHESGPFDWYQKYPSL-APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDV 73
W ++ F Q + L L R+ CG + + D G+ V
Sbjct: 35 DWKEKWVTRHISFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH-TV 93
Query: 74 VNVDISSVVIEAMMKKY-------------------SNRPQLKYIKMDVRQMDEFQTGSF 114
V V+IS + I + S+ + + + G F
Sbjct: 94 VGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKF 153
Query: 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLG 166
D + D+G L ++ + + + + +L+ + Y++ +
Sbjct: 154 DRIWDRGALVAI-----NPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHA 200
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 2e-08
Identities = 25/177 (14%), Positives = 59/177 (33%), Gaps = 20/177 (11%)
Query: 30 YQKY-----PSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVV 82
Y +I Y + ++ VGCG + M + +E ++ D+S+ +
Sbjct: 14 YSSSRPSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATM 73
Query: 83 IEAMMKKYSNRPQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDSLLCGSNS-RQNATQML 140
I+ + Y + + + VDK +D + + + +
Sbjct: 74 IKT-AEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQ 132
Query: 141 KEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLH-VIEKLVVEEKSGHPIWE 196
+ + L+ G + Y PI+ + ++ ++ ++ P WE
Sbjct: 133 RSAYANLRKDGTIAIWGYADPIF---------PDYPEFDDLMIEVPYGKQGLGPYWE 180
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 3e-08
Identities = 30/194 (15%), Positives = 58/194 (29%), Gaps = 22/194 (11%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVV 74
++D A S A +L + G + +D G+ +V
Sbjct: 50 FYDEGAADTYRDLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGW-EVT 108
Query: 75 NVDISSVVIEAMMKKYSNRP-----QLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCG 129
+++S+ V+ A K+ + P + ++ D+ F +VV
Sbjct: 109 ALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL--DKRFGTVV---------IS 157
Query: 130 SNS-----RQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVIEKL 184
S S + + V L+ G ++L + L + L
Sbjct: 158 SGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVL 217
Query: 185 VVEEKSGHPIWELT 198
V I E+T
Sbjct: 218 HVRHLPAEEIQEIT 231
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 4e-08
Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 26/150 (17%)
Query: 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDV 73
+ D A G + ++ + ++ + +R+L +GCG + D G E
Sbjct: 23 AWID---AVRHGAIESRRQ-VTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIE-A 77
Query: 74 VNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLDSLLCGS 130
V VD +++A + Q+ E +D + +
Sbjct: 78 VGVDGDRTLVDAARAAGAGEV----HLASYAQLAEAKVPVGKDYDLIC-----------A 122
Query: 131 N---SRQNATQMLKEVWRVLKDKGVYILVT 157
N Q+ ++L + +L G ++ T
Sbjct: 123 NFALLHQDIIELLSAMRTLLVPGGALVIQT 152
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 5e-08
Identities = 26/178 (14%), Positives = 51/178 (28%), Gaps = 27/178 (15%)
Query: 1 MT----MGTTTQAYGEPW--YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIV 54
MT + + +Y +D + A L +L + +L +
Sbjct: 1 MTTSHGLIESQLSYYRARASEYDATFVPYMDSAA-------PAALERLRAGNIRGDVLEL 53
Query: 55 GCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTG 112
G ++ + V +D S M+ + +++ + D+
Sbjct: 54 ASGTGYWTRHLSGLADR-VTALDGS----AEMIAEAGRHGLDNVEFRQQDLFDWTP--DR 106
Query: 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRD 170
+D+V L + R A + V + GV V RL D
Sbjct: 107 QWDAVF---FAHWLAHVPDDRFEAF--WESVRSAVAPGGVVEFVDVTDHERRLEQQDD 159
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 8e-08
Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 32/156 (20%)
Query: 16 WDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVN 75
+D AH A ++ L +G G + ++ GY +
Sbjct: 12 YDRLRAHPPEVAGQIAT----AMASAVHPKGEEPVFLELGVGTGRIALPLIARGYR-YIA 66
Query: 76 VDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EFQTGSFDSVVDKGTLDSLLCGSN 131
+D AM++ + + K+ V Q D S V+
Sbjct: 67 LDAD----AAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVI------------- 109
Query: 132 SRQ------NATQMLKEVWRVLKDKGVYILVTYGAP 161
+ ++L E RVLK G + A
Sbjct: 110 VVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAE 145
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-07
Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 27/159 (16%)
Query: 16 WDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVN 75
++ Y G + ++ +L L+ + +L VG G + + V
Sbjct: 10 YEAWYGTPLGAYVIAEEERALKGLLP-----PGESLLEVGAGTGYWLRRLPY---PQKVG 61
Query: 76 VDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ 134
V+ S EAM+ R P+ +++ + F SFD V+ TL+ + +
Sbjct: 62 VEPS----EAMLAVGRRRAPEATWVRAWGEALP-FPGESFDVVLLFTTLEFV-------E 109
Query: 135 NATQMLKEVWRVLKDKGVYILVT------YGAPIYRLGM 167
+ ++L E RVL+ G ++ + A RLG
Sbjct: 110 DVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGE 148
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-07
Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 22/164 (13%)
Query: 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKY 98
+ I+ GCGN + + +++ + +DI+ +K+ +
Sbjct: 9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDIN----VIALKEVKEK--FDS 61
Query: 99 IKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
+ E S D ++ + + + ++ EV R+LKD G I++ +
Sbjct: 62 VITLSDPK-EIPDNSVDFILFANSFHDM-------DDKQHVISEVKRILKDDGRVIIIDW 113
Query: 159 GAPIYRLGMLRDSCSWNIKLHVIEKLVVEEKSGHPIWELTNPVP 202
+G + + + EK + S + + NP P
Sbjct: 114 RKENTGIG-------PPLSIRMDEKDYMGWFSNFVVEKRFNPTP 150
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 4e-07
Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 26/146 (17%)
Query: 16 WDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVN 75
++ + + + +K +P R + +G G F+ + + +
Sbjct: 24 YERWFLVHRFAYLSELQ------AVKCLLP--EGRGVEIGVGTGRFAVPL-----KIKIG 70
Query: 76 VDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQN 135
V+ S E M + R + +K + + SFD + T+ + +
Sbjct: 71 VEPS----ERMAEIARKR-GVFVLKGTAENLP-LKDESFDFALMVTTICFV-------DD 117
Query: 136 ATQMLKEVWRVLKDKGVYILVTYGAP 161
+ LKE +R+LK G I+
Sbjct: 118 PERALKEAYRILKKGGYLIVGIVDRE 143
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-07
Identities = 35/192 (18%), Positives = 63/192 (32%), Gaps = 41/192 (21%)
Query: 12 EPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYE 71
E ++ + D Y P+I Y+ IL +GCG+ S + GY
Sbjct: 3 ESYWEKVSGKNIPSSLDLY-------PIIHNYLQED-DEILDIGCGSGKISLELASKGYS 54
Query: 72 DVVNVDISSVVIEAMMKK-----------YSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120
V +DI+ ++ + ++ + + F SFD V
Sbjct: 55 -VTGIDIN----SEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS-FHDSSFDFAV-- 106
Query: 121 GTLDSLLCGSNSR-----QNATQMLKEVWRVLKDKGVYILVTYGAPIYR-LGMLRDSCSW 174
+ + ++++KEV+RVLK LV +G + L R +
Sbjct: 107 -------MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDF 159
Query: 175 NIKLHVIEKLVV 186
I +
Sbjct: 160 PI-TKEEGSFLA 170
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 8e-07
Identities = 17/167 (10%), Positives = 47/167 (28%), Gaps = 24/167 (14%)
Query: 8 QAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVD 67
Y E + ++ E + + ++ +IL +G G ++
Sbjct: 13 GKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILS 72
Query: 68 -------DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----------EFQ 110
+ V+ S+ I + + L+ +K + + +
Sbjct: 73 KVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE 132
Query: 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157
+D + L + ++ LK +L +++
Sbjct: 133 LQKWDFIHMIQMLYYV-------KDIPATLKFFHSLLGTNAKMLIIV 172
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 8e-07
Identities = 31/141 (21%), Positives = 51/141 (36%), Gaps = 26/141 (18%)
Query: 30 YQKYPSL-----APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE 84
YQ S L++L P + IL +GCG +E + G E V+ D ++ +IE
Sbjct: 35 YQDKHSFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAE-VLGTDNAATMIE 93
Query: 85 AMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSR----QNATQML 140
+ Y P L + D R D+V SN+ + +
Sbjct: 94 KARQNY---PHLHFDVADARNFR--VDKPLDAVF-----------SNAMLHWVKEPEAAI 137
Query: 141 KEVWRVLKDKGVYILVTYGAP 161
+ + LK G ++ G
Sbjct: 138 ASIHQALKSGGRFVAEFGGKG 158
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 16/142 (11%)
Query: 18 NRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVD 77
N + Y ++ P + ++ + +L +GC + A + ++G V ++
Sbjct: 3 NSPKNSLYEEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENGTR-VSGIE 61
Query: 78 ISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL--LCGSNSRQN 135
E +K + + ++ M ++ FD V+ D L L +
Sbjct: 62 AFPEAAEQAKEKLDH---VVLGDIETMDMP-YEEEQFDCVI---FGDVLEHL------FD 108
Query: 136 ATQMLKEVWRVLKDKGVYILVT 157
++++V +K GV +
Sbjct: 109 PWAVIEKVKPYIKQNGVILASI 130
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 3e-06
Identities = 29/197 (14%), Positives = 61/197 (30%), Gaps = 25/197 (12%)
Query: 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDV 73
E Y ++ ++L +GCG S + GY DV
Sbjct: 87 CTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGY-DV 145
Query: 74 VNVDISSVVIEAMMKKYSNRP-QLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNS 132
+ D + I + + + D+ + ++D +V L +
Sbjct: 146 TSWDHNENSIAFLNETKEKENLNISTALYDINAANI--QENYDFIVSTVVFMFL-----N 198
Query: 133 RQNATQMLKEVWRVLKDKGVYILVT------YGAPI-----YRLGMLRDSCS-WNIKLHV 180
R+ ++K + G ++V P+ + L++ W L
Sbjct: 199 RERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKDWEF-LEY 257
Query: 181 IE---KLVVEEKSGHPI 194
E +L +++G+ I
Sbjct: 258 NENMGELHKTDENGNRI 274
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 4e-06
Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 21/151 (13%)
Query: 1 MTMGTTTQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSA 60
M++ Y E E+ + ++L GCG A
Sbjct: 1 MSLTEYVHGYSEREALRLSEQAET----LEKLLHHDTVYPP------GAKVLEAGCGIGA 50
Query: 61 FSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSV 117
+ + + + ++ ++DIS +E + +K+++ ++ + F+ SFD +
Sbjct: 51 QTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP-FEDSSFDHI 109
Query: 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLK 148
L+ L Q+ + LK + +VLK
Sbjct: 110 FVCFVLEHL-------QSPEEALKSLKKVLK 133
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 5e-06
Identities = 20/154 (12%), Positives = 44/154 (28%), Gaps = 20/154 (12%)
Query: 27 FDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAM 86
+ L R+L+ CG S + GY VV ++S +E
Sbjct: 2 SHQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERY 60
Query: 87 MKKYSNRPQL--------------KYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNS 132
+ +P + + D + G + D+ + +L
Sbjct: 61 FTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIAL-----P 115
Query: 133 RQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLG 166
+ ++ + ++ +L+T L
Sbjct: 116 ADMRERYVQHLEALMPQACSGLLITLEYDQALLE 149
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 6e-06
Identities = 20/137 (14%), Positives = 52/137 (37%), Gaps = 19/137 (13%)
Query: 31 QKYPSLAPL----IKLYVPSHH-QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIE 84
+K SL + + + +R++ +GCG + ++ D +E + VD+S +E
Sbjct: 8 EKPISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLE 67
Query: 85 AMMKKYS-------NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNAT 137
++ +L+ I+ + D+ + +D+ ++ L
Sbjct: 68 IAQERLDRLRLPRNQWERLQLIQGALTYQDK-RFHGYDAATVIEVIEHL-----DLSRLG 121
Query: 138 QMLKEVWRVLKDKGVYI 154
+ ++ + K V +
Sbjct: 122 AFERVLFEFAQPKIVIV 138
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 8e-06
Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 11/113 (9%)
Query: 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE---AMMKKYSNRPQLKYIKMDVRQ 105
R+L VGCG + + V + IS + A ++ + D
Sbjct: 63 DRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD 122
Query: 106 MDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
+ F+ SFD+V +L + + + L+E+ RVL+ G + +
Sbjct: 123 LP-FEDASFDAVW------ALESLHHM-PDRGRALREMARVLRPGGTVAIADF 167
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 9e-06
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 11/113 (9%)
Query: 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE---AMMKKYSNRPQLKYIKMDVRQ 105
+ L +G G + +V + ++I+ V + + + +
Sbjct: 84 AKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE 143
Query: 106 MDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
+ + S+D + S +S + ++ +E RVLK +GV +
Sbjct: 144 IP-CEDNSYDFIW------SQDAFLHS-PDKLKVFQECARVLKPRGVMAITDP 188
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 44.2 bits (103), Expect = 1e-05
Identities = 31/185 (16%), Positives = 64/185 (34%), Gaps = 21/185 (11%)
Query: 39 LIKLYVPSHHQ------RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92
LI ++ Q +L +GCG +V DI+ V ++ ++Y +
Sbjct: 20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYED 79
Query: 93 RPQLKYIKMDVRQMDEFQTGSFDSVVDK-----GTLDSLLC------GSNSRQNATQMLK 141
+ + S + ++DK D C S + A ML+
Sbjct: 80 MKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLR 139
Query: 142 EVWRVLKDKGVYILVTY-GAPIYRLGMLRDSCSWNIKLHVIEKLVVEEKSGHPIWELTNP 200
L G +I T + R ++ S+ +++ ++ ++K +P++
Sbjct: 140 NACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKF---QKKGDYPLFGCKYD 196
Query: 201 VPLEN 205
LE
Sbjct: 197 FNLEG 201
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-05
Identities = 24/146 (16%), Positives = 57/146 (39%), Gaps = 17/146 (11%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQ--RILIVGCGNSAFSEGMVDDGYED 72
+ + Y F ++ + ++ Y+P R+L +GCG F E ++G +
Sbjct: 9 HTSDYYFLFEEKFRGSREL--VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGI-E 65
Query: 73 VVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MDEFQTGSFDSVVDKGTLDSLLCGSN 131
+ VDI+ +I+ K++ +K D + + D V+ ++ L
Sbjct: 66 SIGVDINEDMIKFCEGKFNV------VKSDAIEYLKSLPDKYLDGVMISHFVEHL----- 114
Query: 132 SRQNATQMLKEVWRVLKDKGVYILVT 157
+ ++L + +K ++ +
Sbjct: 115 DPERLFELLSLCYSKMKYSSYIVIES 140
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-05
Identities = 22/154 (14%), Positives = 51/154 (33%), Gaps = 24/154 (15%)
Query: 17 DNRYAHE---SGPFDWYQKYPSLAP---------LIKLYVPSHHQRILIVGCGNSAFSEG 64
+N+ H+ + D++ P L + + I +GCG +
Sbjct: 4 ENKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMV 63
Query: 65 MVDDGYEDVVNVDISSVVIE---AMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121
+ V +D S I+ ++ + ++ I + + F+ D + +G
Sbjct: 64 LAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP-FRNEELDLIWSEG 122
Query: 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155
+ ++ + L E + LK G +
Sbjct: 123 AIYNI--------GFERGLNEWRKYLKKGGYLAV 148
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-05
Identities = 14/118 (11%), Positives = 37/118 (31%), Gaps = 26/118 (22%)
Query: 49 QRILIVGCGNSAFSE---GMVDDGYEDVVNVDISSVVIEAMMKKYSNRP-QLKYIKMDVR 104
I+ GCG ++ +G + +D ++ + + P ++++ D
Sbjct: 24 VHIVDYGCGYGYLGLVLMPLLPEGSK-YTGIDSGETLLAEARELFRLLPYDSEFLEGDAT 82
Query: 105 QMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ------NATQMLKEVWRVLKDKGVYILV 156
+++ +D + ML+++ +K G I
Sbjct: 83 EIE-LN-DKYDIAI-------------CHAFLLHMTTPETMLQKMIHSVKKGGKIICF 125
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 3e-05
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 12/111 (10%)
Query: 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE---AMMKKYSNRPQLKYIKMDVR 104
+I +GCG + + D + +D+ IE K + ++K I +
Sbjct: 47 DAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD 106
Query: 105 QMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155
+ FQ D + +G + ++ + + E + LK G +
Sbjct: 107 NLP-FQNEELDLIWSEGAIYNI--------GFERGMNEWSKYLKKGGFIAV 148
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 4e-05
Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 13/119 (10%)
Query: 49 QRILIVGCG---NSAFSEGMVDDGYEDVVNVDISSVVIE---AMMKKYSNRPQLKYIKMD 102
+ V CG + G + +V +D ++ + ++ Q+ + D
Sbjct: 120 CVVASVPCGWMSELLALDYSACPGVQ-LVGIDYDPEALDGATRLAAGHALAGQITLHRQD 178
Query: 103 VRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161
++D +D + G T++ + W+ LK G + P
Sbjct: 179 AWKLDT--REGYDLLTSNGLNIYEP----DDARVTELYRRFWQALKPGGALVTSFLTPP 231
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-05
Identities = 22/149 (14%), Positives = 43/149 (28%), Gaps = 30/149 (20%)
Query: 25 GPFDW----YQKYPSL-----APLIKLYVPSHHQRILIVGCGNSAFSEGMVD-DGYEDVV 74
G W Y K+ L+ +GCG +E + D G +
Sbjct: 2 GHMAWSAQQYLKFEDERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVIT 61
Query: 75 NVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSR- 133
+D ++E + P + K D+ D + +N+
Sbjct: 62 GIDSDDDMLEKAADRL---PNTNFGKADLATWK--PAQKADLLY-----------ANAVF 105
Query: 134 ---QNATQMLKEVWRVLKDKGVYILVTYG 159
+ +L ++ L+ GV +
Sbjct: 106 QWVPDHLAVLSQLMDQLESGGVLAVQMPD 134
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 7e-05
Identities = 19/137 (13%), Positives = 51/137 (37%), Gaps = 19/137 (13%)
Query: 31 QKYPSLAPL----IKLYVPSHH-QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIE 84
+K +L + + S + ++++ +GCG ++ D +E + VD+S V+E
Sbjct: 8 EKKLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLE 67
Query: 85 AMMKKYS-------NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNAT 137
+ R ++ + + D+ + +D+ ++ L
Sbjct: 68 RAKDRLKIDRLPEMQRKRISLFQSSLVYRDK-RFSGYDAATVIEVIEHL-----DENRLQ 121
Query: 138 QMLKEVWRVLKDKGVYI 154
K ++ + + V +
Sbjct: 122 AFEKVLFEFTRPQTVIV 138
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQM 106
+ +G G A S + + +D S + E +K ++ +++ ++ DV +
Sbjct: 46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI 105
Query: 107 DEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLK 148
+ D +V ++ +E++R+LK
Sbjct: 106 P-IEDNYADLIV-------SRGSVFFWEDVATAFREIYRILK 139
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 23/134 (17%)
Query: 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-- 93
LA L+++ ++ +L V G + + VV D++ +++
Sbjct: 26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGH 84
Query: 94 PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ------NATQMLKEVWRVL 147
Q++Y++ D QM F F V R N + E +RVL
Sbjct: 85 QQVEYVQGDAEQMP-FTDERFHIVT-------------CRIAAHHFPNPASFVSEAYRVL 130
Query: 148 KDKGVYILVTYGAP 161
K G +LV AP
Sbjct: 131 KKGGQLLLVDNSAP 144
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 23/135 (17%)
Query: 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR- 93
SL +IK R+L +G G + E + VD + ++E +
Sbjct: 9 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQE-CIGVDATKEMVEVASSFAQEKG 67
Query: 94 -PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ------NATQMLKEVWRV 146
+++ + + F SFD + R + + ++EV RV
Sbjct: 68 VENVRFQQGTAESLP-FPDDSFDIIT-------------CRYAAHHFSDVRKAVREVARV 113
Query: 147 LKDKGVYILVTYGAP 161
LK G ++LV + AP
Sbjct: 114 LKQDGRFLLVDHYAP 128
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 4e-04
Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 12/112 (10%)
Query: 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE---AMMKKYSNRPQLKYIKMDVRQ 105
++ GCG V V +S+ + ++ ++ ++
Sbjct: 119 DTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLD 178
Query: 106 MDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157
F G+ + +S + + + E R LK G Y+ +T
Sbjct: 179 TP-FDKGAVTAS---WNNESTM-----YVDLHDLFSEHSRFLKVGGRYVTIT 221
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 39.4 bits (91), Expect = 5e-04
Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 21/137 (15%)
Query: 33 YPSLAPL----IKLYVPSHH-QRILIVGCGNSAFSEGMV--DDGYEDVVNVDISSVVIEA 85
P L+ ++ ++ GCG+ + + ++ + ++ VDIS +
Sbjct: 702 KPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLAR 761
Query: 86 MMKKY--------SNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNAT 137
K N + + D + D ++ + A
Sbjct: 762 AAKMLHVKLNKEACNVKSATLYDGSILEFDS-RLHDVDIGTCLEVIEHM-----EEDQAC 815
Query: 138 QMLKEVWRVLKDKGVYI 154
+ ++V + K + +
Sbjct: 816 EFGEKVLSLFHPKLLIV 832
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 207 | |||
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.91 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.89 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.85 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.84 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.83 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.83 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.83 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.83 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.82 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.81 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.81 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.8 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.8 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.8 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.8 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.79 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.79 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.78 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.78 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.78 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.78 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.78 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.78 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.78 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.77 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.77 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.77 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.77 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.77 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.77 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.77 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.77 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.77 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.76 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.76 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.76 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.75 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.75 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.75 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.75 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.75 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.75 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.74 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.74 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.74 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.74 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.74 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.74 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.74 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.74 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.74 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.74 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.73 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.73 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.73 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.73 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.73 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.73 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.72 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.72 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.72 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.72 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.72 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.72 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.71 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.71 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.71 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.71 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.71 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.71 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.7 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.7 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.7 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.69 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.69 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.69 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.69 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.69 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.68 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.68 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.68 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.68 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.67 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.67 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.66 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.66 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.66 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.66 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.66 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.66 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.66 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.66 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.66 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.66 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.65 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.65 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.65 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.64 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.64 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.64 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.64 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.64 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.64 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.63 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.63 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.63 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.63 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.63 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.62 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.62 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.62 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.62 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.62 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.61 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.61 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.61 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.61 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.6 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.6 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.6 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.6 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.6 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.59 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.59 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.59 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.59 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.59 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.58 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.58 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.58 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.58 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.58 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.58 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.58 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.57 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.57 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.57 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.57 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.57 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.56 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.56 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.56 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.56 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.56 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.56 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.56 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.56 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.55 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.55 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.55 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.55 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.54 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.54 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.54 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.54 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.54 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.54 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.53 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.53 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.53 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.53 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.53 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.53 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.53 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.53 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.53 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.52 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.52 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.52 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.52 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.52 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.52 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.52 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.52 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.52 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.51 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.51 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.51 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.51 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.51 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.51 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.51 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.5 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.5 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.5 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.5 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.49 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.49 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.49 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.49 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.49 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.49 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.49 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.49 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.48 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.48 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.48 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.48 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.48 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.48 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.48 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.48 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.48 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.48 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.48 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.47 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.47 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.46 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.46 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.45 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.45 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.45 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.45 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.45 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.44 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.44 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.44 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.43 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.43 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.43 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.42 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.42 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.42 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.41 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.41 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.41 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.41 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.41 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.4 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.4 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.39 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.38 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.38 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.38 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.37 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.37 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.35 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.35 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.35 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.35 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.34 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.34 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.33 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.33 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.32 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.31 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.31 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.28 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.27 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.26 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.24 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.24 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.24 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.22 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.21 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.19 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.18 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.17 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.15 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.13 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.13 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.13 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.12 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.12 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.07 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 99.05 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.03 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.02 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.0 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.99 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.95 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.93 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.9 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.9 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.89 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.86 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.86 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.85 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.83 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.8 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.8 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.79 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.76 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.76 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.72 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.67 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.65 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.64 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.61 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.55 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.52 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.41 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.4 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.35 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.35 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.35 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 98.06 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.06 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.96 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.77 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.71 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.7 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.68 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.65 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.56 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.53 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.49 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 97.45 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.33 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.96 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 96.91 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.9 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.81 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.75 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.58 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.48 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.39 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.3 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.3 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.28 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 96.06 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.98 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.58 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.54 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.53 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.48 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 95.42 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.32 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.21 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.18 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.13 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.08 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.99 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.86 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.74 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.46 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 94.3 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.2 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.17 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.14 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 94.04 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.92 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.91 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 93.84 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.83 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.83 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 93.8 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 93.79 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 93.57 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 93.38 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.32 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.16 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.08 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 93.04 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 92.94 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 92.72 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 92.64 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 92.62 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 92.58 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 92.54 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 92.47 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 92.41 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 92.34 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 92.29 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 92.25 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 92.17 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 92.17 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 92.11 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 92.05 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 92.05 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 91.9 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 91.78 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 91.64 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 91.6 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 91.58 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 91.49 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 91.48 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 91.43 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 91.23 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 90.88 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 90.75 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 90.6 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 90.38 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 90.3 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 89.92 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 89.85 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 89.45 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 89.37 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 89.36 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 89.35 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 89.31 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 89.28 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 89.16 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 89.01 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 89.01 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 89.0 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 88.98 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 88.92 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 88.81 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 88.71 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 88.71 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 88.58 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 88.3 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 88.26 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.21 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 88.2 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 88.17 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 88.14 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 88.12 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 88.07 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 87.95 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 87.88 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 87.27 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 87.2 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 87.0 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 86.92 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 86.79 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 86.56 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 86.5 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 86.28 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 86.24 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 86.18 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 86.16 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 86.09 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 86.01 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 85.93 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 85.76 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 85.5 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 85.44 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 85.39 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 85.37 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 85.25 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 85.2 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 84.98 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 84.91 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 84.85 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 84.29 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 84.29 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 84.22 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 84.21 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 84.15 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 83.55 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 83.25 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 83.03 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 82.76 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 82.59 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 82.59 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 82.59 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 82.44 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 82.37 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 82.26 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 82.26 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 82.13 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 81.95 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 81.93 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 81.77 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 81.77 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 81.58 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 81.4 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 81.32 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 81.3 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 81.27 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 81.14 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 81.03 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 80.93 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 80.87 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 80.66 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 80.56 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 80.16 |
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.1e-24 Score=157.69 Aligned_cols=172 Identities=39% Similarity=0.720 Sum_probs=139.4
Q ss_pred CCCCChhchhhhhcccC--CceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHH
Q 028547 8 QAYGEPWYWDNRYAHES--GPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA 85 (207)
Q Consensus 8 ~~~~~~~~w~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~ 85 (207)
+.|...+||+++|.... ..+.|+.....+...+...+.+.. +|||+|||+|.++..+++.+..+++++|+++.+++.
T Consensus 2 ~~~~~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~ 80 (215)
T 2pxx_A 2 SGYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPED-RILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAA 80 (215)
T ss_dssp GGGGCHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGCCTTC-CEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHH
T ss_pred CcccchhHHHHHhccCCCCCCcccccCHHHHHHHHHHhcCCCC-eEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHH
Confidence 46888999999998774 356787777777788877765555 999999999999999999876699999999999999
Q ss_pred HHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCC--------ChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 86 MMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSN--------SRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 86 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~--------~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
++++.....++.+.++|+.+. +++.++||+|++..+++++.+... ...+...+++++.++|+|||.+++.+
T Consensus 81 a~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 81 MQACYAHVPQLRWETMDVRKL-DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp HHHHTTTCTTCEEEECCTTSC-CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhcccCCCcEEEEcchhcC-CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 999887656899999999987 577789999999999987732211 13577899999999999999999999
Q ss_pred eCCcccccccc-cCCCCceEEEEEE
Q 028547 158 YGAPIYRLGML-RDSCSWNIKLHVI 181 (207)
Q Consensus 158 ~~~~~~~~~~~-~~~~~~~~~~~~~ 181 (207)
+..+.....++ ...+.|.......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (215)
T 2pxx_A 160 SAAPHFRTRHYAQAYYGWSLRHATY 184 (215)
T ss_dssp SCCHHHHHHHHCCGGGCEEEEEEEE
T ss_pred CCCcHHHHHHHhccccCcEEEEEEe
Confidence 88877666666 4445677654443
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.6e-23 Score=156.48 Aligned_cols=145 Identities=16% Similarity=0.266 Sum_probs=112.7
Q ss_pred CCCCCChhchhhhhcccCCceeeecCccCHHHHHHhhC-CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHH
Q 028547 7 TQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYV-PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA 85 (207)
Q Consensus 7 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~ 85 (207)
+......+||+++|......|.+......+.+.+.... ...+.+|||+|||+|.++..+++.|+ +|+|+|+|+.+++.
T Consensus 27 ~~~~~~~~~Wd~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~ 105 (252)
T 2gb4_A 27 KNQVLTLEDWKEKWVTRHISFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIRE 105 (252)
T ss_dssp TTCCCCHHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred ccccCCHHHHHHHHhcCCCCcccCCCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 44455689999999876555433333334455554432 22334999999999999999999988 99999999999999
Q ss_pred HHHHcc-------------------CCCCceEEEeccccccccCC-CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHH
Q 028547 86 MMKKYS-------------------NRPQLKYIKMDVRQMDEFQT-GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWR 145 (207)
Q Consensus 86 ~~~~~~-------------------~~~~~~~~~~d~~~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 145 (207)
++++.. ...++.|+++|+.++. ... ++||+|++..+++++ +..+...+++++.+
T Consensus 106 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~-~~~~~~FD~V~~~~~l~~l-----~~~~~~~~l~~~~~ 179 (252)
T 2gb4_A 106 FFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP-RANIGKFDRIWDRGALVAI-----NPGDHDRYADIILS 179 (252)
T ss_dssp HHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG-GGCCCCEEEEEESSSTTTS-----CGGGHHHHHHHHHH
T ss_pred HHHhcccccccccccccccccccccCCCceEEEECccccCC-cccCCCEEEEEEhhhhhhC-----CHHHHHHHHHHHHH
Confidence 987653 1257999999999983 443 799999999999887 55678899999999
Q ss_pred hcCCCcEEEEEEe
Q 028547 146 VLKDKGVYILVTY 158 (207)
Q Consensus 146 ~L~pgG~~~~~~~ 158 (207)
+|+|||.++++++
T Consensus 180 ~LkpGG~l~l~~~ 192 (252)
T 2gb4_A 180 LLRKEFQYLVAVL 192 (252)
T ss_dssp TEEEEEEEEEEEE
T ss_pred HcCCCeEEEEEEE
Confidence 9999999976653
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.3e-21 Score=140.52 Aligned_cols=115 Identities=17% Similarity=0.249 Sum_probs=94.6
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--------------CCCceEEEe
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--------------RPQLKYIKM 101 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--------------~~~~~~~~~ 101 (207)
+.+++..+....+.+|||+|||+|.++..+++.|+ +|+|+|+|+.+++.++++... ..+++++++
T Consensus 11 l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 11 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 45555554333445999999999999999999987 999999999999999988542 358999999
Q ss_pred ccccccccCC-CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 102 DVRQMDEFQT-GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 102 d~~~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+.++ ++.. ++||+|++..+++++ +..+...++++++++|||||.+++.+
T Consensus 90 d~~~l-~~~~~~~fD~v~~~~~l~~l-----~~~~~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 90 DFFAL-TARDIGHCAAFYDRAAMIAL-----PADMRERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp CCSSS-THHHHHSEEEEEEESCGGGS-----CHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred ccccC-CcccCCCEEEEEECcchhhC-----CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99998 4444 789999999899887 45677889999999999999855554
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-21 Score=146.00 Aligned_cols=112 Identities=21% Similarity=0.335 Sum_probs=96.5
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCe
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (207)
.+.+.+....+... +|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++ .+++.++++|+.++ ++++++|
T Consensus 28 ~l~~~l~~~~~~~~-~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~----~~~v~~~~~~~e~~-~~~~~sf 100 (257)
T 4hg2_A 28 ALFRWLGEVAPARG-DALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALR----HPRVTYAVAPAEDT-GLPPASV 100 (257)
T ss_dssp HHHHHHHHHSSCSS-EEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCC----CTTEEEEECCTTCC-CCCSSCE
T ss_pred HHHHHHHHhcCCCC-CEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhh----cCCceeehhhhhhh-cccCCcc
Confidence 45666666666665 999999999999999999876 99999999999987654 36899999999998 6899999
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|+|++..++|++ +...++++++++|||||.|.+..+...
T Consensus 101 D~v~~~~~~h~~--------~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 101 DVAIAAQAMHWF--------DLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp EEEEECSCCTTC--------CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred cEEEEeeehhHh--------hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 999999999886 467899999999999999999887544
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=143.06 Aligned_cols=103 Identities=18% Similarity=0.377 Sum_probs=93.6
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
++.+|||+|||+|.++..+++.+..+++++|+++.+++.++++.. ..++.++++|+.+. +++.++||+|++..+++++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~ 121 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT-SPVVCYEQKAIEDI-AIEPDAYNVVLSSLALHYI 121 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC-CTTEEEEECCGGGC-CCCTTCEEEEEEESCGGGC
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc-cCCeEEEEcchhhC-CCCCCCeEEEEEchhhhhh
Confidence 445999999999999999999876799999999999999999886 46899999999987 5778999999999999998
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.+...++++++++|+|||.+++.+.
T Consensus 122 -------~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 122 -------ASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp -------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -------hhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 7899999999999999999999764
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=140.69 Aligned_cols=139 Identities=22% Similarity=0.318 Sum_probs=111.9
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
.++|++.|......|........+..++.....+.. +|||+|||+|.++..+++.+. +|+++|+++.+++.++++...
T Consensus 33 ~~~w~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~ 110 (235)
T 3lcc_A 33 EGGWEKCWEEEITPWDQGRATPLIVHLVDTSSLPLG-RALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGS 110 (235)
T ss_dssp HHHHHHHHHTTCCTTCCSSCCHHHHHHHHTTCSCCE-EEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCcccCCCCHHHHHHHHhcCCCCC-CEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhc
Confidence 568999998765554333333345555555444444 999999999999999988766 899999999999999998865
Q ss_pred C---CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 93 R---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 93 ~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
. .++.|+++|+.+.. +.++||+|++..+++++ +..+...+++++.++|+|||.+++..+..
T Consensus 111 ~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 111 SPKAEYFSFVKEDVFTWR--PTELFDLIFDYVFFCAI-----EPEMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp SGGGGGEEEECCCTTTCC--CSSCEEEEEEESSTTTS-----CGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred cCCCcceEEEECchhcCC--CCCCeeEEEEChhhhcC-----CHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 2 46899999999973 55699999999999988 45689999999999999999999987644
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-20 Score=139.75 Aligned_cols=118 Identities=28% Similarity=0.515 Sum_probs=102.9
Q ss_pred ccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCC
Q 028547 33 YPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (207)
...+...+...+++.. +|||+|||+|.++..+++.+. +++++|+++.+++.++++... .++.+++.|+.+. +++.+
T Consensus 40 ~~~~~~~l~~~~~~~~-~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~-~~~~~ 115 (242)
T 3l8d_A 40 RSTIIPFFEQYVKKEA-EVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEG-PDLSFIKGDLSSL-PFENE 115 (242)
T ss_dssp TTTHHHHHHHHSCTTC-EEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTCB-TTEEEEECBTTBC-SSCTT
T ss_pred HHHHHHHHHHHcCCCC-eEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhccc-CCceEEEcchhcC-CCCCC
Confidence 3456777777777665 999999999999999999976 999999999999999988533 6899999999988 57789
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+||+|++..+++++ .+...+++++.++|+|||.+++.++...
T Consensus 116 ~fD~v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 157 (242)
T 3l8d_A 116 QFEAIMAINSLEWT-------EEPLRALNEIKRVLKSDGYACIAILGPT 157 (242)
T ss_dssp CEEEEEEESCTTSS-------SCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred CccEEEEcChHhhc-------cCHHHHHHHHHHHhCCCeEEEEEEcCCc
Confidence 99999999999998 7888999999999999999999886443
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=139.45 Aligned_cols=112 Identities=19% Similarity=0.251 Sum_probs=93.1
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC---CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCC
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY---EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~ 112 (207)
+++.++++.. +|||+|||+|.++..+++... .+|+|+|+|+.+++.|++++... .++.|+++|+.++ + .+
T Consensus 63 l~~~~~~~~~-~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~-~--~~ 138 (261)
T 4gek_A 63 LAERFVQPGT-QVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-A--IE 138 (261)
T ss_dssp HHHHHCCTTC-EEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC-C--CC
T ss_pred HHHHhCCCCC-EEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc-c--cc
Confidence 3444555555 999999999999999988631 38999999999999999987532 4799999999887 3 35
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+||+|++..+++++ +..+...++++++++|+|||.|++....
T Consensus 139 ~~d~v~~~~~l~~~-----~~~~~~~~l~~i~~~LkpGG~lii~e~~ 180 (261)
T 4gek_A 139 NASMVVLNFTLQFL-----EPSERQALLDKIYQGLNPGGALVLSEKF 180 (261)
T ss_dssp SEEEEEEESCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ccccceeeeeeeec-----CchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence 79999999999988 5567788999999999999999998753
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-20 Score=141.09 Aligned_cols=101 Identities=19% Similarity=0.287 Sum_probs=91.6
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~ 128 (207)
.+|||+|||+|.++..+++.+. +++|+|+++.+++.++++... ++.+++.|+.+. .++++||+|++..+++|+
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~--~v~~~~~d~~~~--~~~~~fD~v~~~~~l~~~-- 116 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD--GITYIHSRFEDA--QLPRRYDNIVLTHVLEHI-- 116 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS--CEEEEESCGGGC--CCSSCEEEEEEESCGGGC--
T ss_pred CcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC--CeEEEEccHHHc--CcCCcccEEEEhhHHHhh--
Confidence 4999999999999999999877 999999999999999998765 799999999887 367899999999999998
Q ss_pred CCCChhhHHHHHHHHH-HhcCCCcEEEEEEeCCc
Q 028547 129 GSNSRQNATQMLKEVW-RVLKDKGVYILVTYGAP 161 (207)
Q Consensus 129 ~~~~~~~~~~~l~~~~-~~L~pgG~~~~~~~~~~ 161 (207)
.+...+++++. ++|+|||.+++.+....
T Consensus 117 -----~~~~~~l~~~~~~~LkpgG~l~i~~~~~~ 145 (250)
T 2p7i_A 117 -----DDPVALLKRINDDWLAEGGRLFLVCPNAN 145 (250)
T ss_dssp -----SSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred -----cCHHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence 78899999999 99999999999886543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=128.45 Aligned_cols=132 Identities=19% Similarity=0.288 Sum_probs=105.1
Q ss_pred CCCChhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 028547 9 AYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMK 88 (207)
Q Consensus 9 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~ 88 (207)
.+....||...|..... . ..++......++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~-------~---~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~ 72 (199)
T 2xvm_A 4 VIRDENYFTDKYELTRT-------H---SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVER 72 (199)
T ss_dssp CCCCTTHHHHHHTCCCC-------C---HHHHHHTTTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred EEechHHHhhhhccccc-------c---HHHHHHhhccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHH
Confidence 35667899988865321 1 2333333223345999999999999999999876 99999999999999998
Q ss_pred HccC--CCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 89 KYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 89 ~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+... ..++.+.+.|+.+. ++ .++||+|++..+++++ +..+...+++++.++|+|||.+++.+.
T Consensus 73 ~~~~~~~~~~~~~~~d~~~~-~~-~~~~D~v~~~~~l~~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 73 IKSIENLDNLHTRVVDLNNL-TF-DRQYDFILSTVVLMFL-----EAKTIPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp HHHHHTCTTEEEEECCGGGC-CC-CCCEEEEEEESCGGGS-----CGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHhCCCCCcEEEEcchhhC-CC-CCCceEEEEcchhhhC-----CHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 7652 24799999999987 45 7899999999999987 445889999999999999999888664
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-19 Score=132.84 Aligned_cols=116 Identities=14% Similarity=0.205 Sum_probs=96.5
Q ss_pred cCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCC
Q 028547 34 PSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 34 ~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (207)
..+..+++.....++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++.. .++.+.++|+.+. +++ ++
T Consensus 32 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~--~~~~~~~~d~~~~-~~~-~~ 106 (220)
T 3hnr_A 32 AHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP--KEFSITEGDFLSF-EVP-TS 106 (220)
T ss_dssp TTHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC--TTCCEESCCSSSC-CCC-SC
T ss_pred HHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC--CceEEEeCChhhc-CCC-CC
Confidence 3445666655444555999999999999999999876 99999999999999999876 4789999999998 455 89
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
||+|++..+++++ +......+++++.++|+|||.+++.+..
T Consensus 107 fD~v~~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 107 IDTIVSTYAFHHL-----TDDEKNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp CSEEEEESCGGGS-----CHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred eEEEEECcchhcC-----ChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 9999999999998 2233344999999999999999998743
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-19 Score=132.21 Aligned_cols=115 Identities=13% Similarity=0.239 Sum_probs=98.0
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeE
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
..++..+....+.+|||+|||+|.++..+++.+. +++++|+++.+++.++++. +++.++++|+.+. +++.++||+
T Consensus 31 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~-~~~~~~fD~ 105 (203)
T 3h2b_A 31 RVLIEPWATGVDGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH---PSVTFHHGTITDL-SDSPKRWAG 105 (203)
T ss_dssp HHHHHHHHHHCCSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC---TTSEEECCCGGGG-GGSCCCEEE
T ss_pred HHHHHHHhccCCCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC---CCCeEEeCccccc-ccCCCCeEE
Confidence 4444444333345999999999999999999977 9999999999999999985 4789999999997 577899999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|++..+++++ +.++...+++++.++|+|||.+++.++...
T Consensus 106 v~~~~~l~~~-----~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 145 (203)
T 3h2b_A 106 LLAWYSLIHM-----GPGELPDALVALRMAVEDGGGLLMSFFSGP 145 (203)
T ss_dssp EEEESSSTTC-----CTTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred EEehhhHhcC-----CHHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 9999999988 445899999999999999999999886554
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-19 Score=131.98 Aligned_cols=141 Identities=16% Similarity=0.242 Sum_probs=108.7
Q ss_pred CChhchhhhhcccCCceeeecCc---cCHHHHHHhhCCCC-CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHH
Q 028547 11 GEPWYWDNRYAHESGPFDWYQKY---PSLAPLIKLYVPSH-HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAM 86 (207)
Q Consensus 11 ~~~~~w~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~ 86 (207)
...++|++.|... +.|.+.... ..+..++....... +.+|||+|||+|.++..+++.+. +++++|+++.+++.+
T Consensus 12 ~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a 89 (216)
T 3ofk_A 12 NTYQSLERELAND-DPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRA 89 (216)
T ss_dssp SHHHHHHHHHTSS-SGGGTTTCHHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHH
T ss_pred chHHHHHHHhcCC-CCcccccCHhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHH
Confidence 3467888888764 223222111 12344555444433 35999999999999999999875 999999999999999
Q ss_pred HHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 87 MKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 87 ~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+++.....++.+++.|+.+.. +.++||+|++..+++++ .+......+++++.++|+|||.+++.+..
T Consensus 90 ~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~l~~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 90 CQRTKRWSHISWAATDILQFS--TAELFDLIVVAEVLYYL----EDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp HHHTTTCSSEEEEECCTTTCC--CSCCEEEEEEESCGGGS----SSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred HHhcccCCCeEEEEcchhhCC--CCCCccEEEEccHHHhC----CCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 999877678999999999984 67899999999999998 11244578899999999999999997743
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-19 Score=135.70 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=98.7
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCC
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~ 112 (207)
.+..++......++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++... .+++.+.++|+.++ +++++
T Consensus 25 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l-~~~~~ 102 (260)
T 1vl5_A 25 DLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-PFTDE 102 (260)
T ss_dssp CHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-CSCTT
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC-CCCCC
Confidence 456666665545556999999999999999999876 999999999999999988652 25799999999987 67889
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+||+|++..+++++ .+...+++++.++|+|||.+++...
T Consensus 103 ~fD~V~~~~~l~~~-------~d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 103 RFHIVTCRIAAHHF-------PNPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp CEEEEEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEEEEEEhhhhHhc-------CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 99999999999998 7889999999999999999999764
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-19 Score=133.05 Aligned_cols=135 Identities=27% Similarity=0.469 Sum_probs=97.5
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
..||+..+..... ....+...+...+++.. +|||+|||+|.++..+++.+. +++++|+++.+++.++++...
T Consensus 3 ~~yw~~~~~~~~~------~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~ 74 (235)
T 3sm3_A 3 ESYWEKVSGKNIP------SSLDLYPIIHNYLQEDD-EILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARS 74 (235)
T ss_dssp ---------------------CCCCTTHHHHCCTTC-EEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTC
T ss_pred hhHHHHHhhccCC------CHHHHHHHHHHhCCCCC-eEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHh
Confidence 5688877764321 11122334555555555 999999999999999999976 999999999999999998764
Q ss_pred C-------CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 93 R-------PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 93 ~-------~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
. .++.+.+.|+.+. +++.++||+|++..+++++ .+......+++++.++|+|||.+++.++..
T Consensus 75 ~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 75 PGLNQKTGGKAEFKVENASSL-SFHDSSFDFAVMQAFLTSV----PDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp CSCCSSSSCEEEEEECCTTSC-CSCTTCEEEEEEESCGGGC----CCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred cCCccccCcceEEEEeccccc-CCCCCceeEEEEcchhhcC----CCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 3 1578999999987 5778899999999999987 122334499999999999999999988644
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-19 Score=140.10 Aligned_cols=147 Identities=15% Similarity=0.139 Sum_probs=102.7
Q ss_pred CCCChhchhhhhcccCCceeeecCccCHHHHHHhhC---CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHH
Q 028547 9 AYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYV---PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA 85 (207)
Q Consensus 9 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~ 85 (207)
.|+...||+.+|......+.-....+-+...+..+. ..++.+|||||||+|.++..++..++.+|+|+|+|+.+++.
T Consensus 14 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~ 93 (263)
T 2a14_A 14 HFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREE 93 (263)
T ss_dssp HCCHHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHH
T ss_pred ccCHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHH
Confidence 356678888888765433210000001112222221 22334999999999999888888776689999999999999
Q ss_pred HHHHccCCC-------------------------------Cce-EEEecccccccc---CCCCeeEEEeCcchhhhccCC
Q 028547 86 MMKKYSNRP-------------------------------QLK-YIKMDVRQMDEF---QTGSFDSVVDKGTLDSLLCGS 130 (207)
Q Consensus 86 ~~~~~~~~~-------------------------------~~~-~~~~d~~~~~~~---~~~~fD~v~~~~~l~~~~~~~ 130 (207)
+++++...+ ++. ++++|+.+..++ ..++||+|++..+++++.
T Consensus 94 a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~--- 170 (263)
T 2a14_A 94 LEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC--- 170 (263)
T ss_dssp HHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC---
T ss_pred HHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhc---
Confidence 988654321 122 888999885443 256899999999999861
Q ss_pred CChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 131 NSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 131 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
....+...++++++++|||||.|++.+.
T Consensus 171 ~~~~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 171 CSLDAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 1236778999999999999999999874
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=133.49 Aligned_cols=115 Identities=18% Similarity=0.345 Sum_probs=98.9
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEE
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
++..+..+++.+|||+|||+|.++..+++. +. +|+++|+++.+++.++++.....++.+++.|+.+. +++.++||+|
T Consensus 47 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v 124 (266)
T 3ujc_A 47 ILSDIELNENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNNKIIFEANDILTK-EFPENNFDLI 124 (266)
T ss_dssp HTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTC-CCCTTCEEEE
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccC-CCCCCcEEEE
Confidence 333333334459999999999999999987 55 99999999999999999887557899999999998 6788999999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++..+++++ +..+...+++++.++|+|||.+++.++..
T Consensus 125 ~~~~~l~~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (266)
T 3ujc_A 125 YSRDAILAL-----SLENKNKLFQKCYKWLKPTGTLLITDYCA 162 (266)
T ss_dssp EEESCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred eHHHHHHhc-----ChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 999999998 66899999999999999999999988543
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=130.46 Aligned_cols=106 Identities=22% Similarity=0.420 Sum_probs=91.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++....++.++++|+.+. +++ ++||+|++..+++++
T Consensus 45 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~~~-~~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 45 NPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKY-DFE-EKYDMVVSALSIHHL 122 (234)
T ss_dssp SCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTC-CCC-SCEEEEEEESCGGGS
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhcc-CCC-CCceEEEEeCccccC
Confidence 3599999999999999999984 2499999999999999999987666899999999998 344 899999999999998
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+......++++++++|+|||.+++.+...
T Consensus 123 -----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 123 -----EDEDKKELYKRSYSILKESGIFINADLVH 151 (234)
T ss_dssp -----CHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred -----CHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 33455579999999999999999988543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-19 Score=131.68 Aligned_cols=142 Identities=18% Similarity=0.295 Sum_probs=107.0
Q ss_pred CCCCCCCCCC--hhchhhhhcccCCceeeecCccCHH-HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCC
Q 028547 3 MGTTTQAYGE--PWYWDNRYAHESGPFDWYQKYPSLA-PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDIS 79 (207)
Q Consensus 3 m~~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s 79 (207)
|..+...|.. ..+|+..+...... .+..+. .++.....++. +|||+|||+|.++..+++....+++++|++
T Consensus 2 M~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s 75 (219)
T 3dlc_A 2 MSENKKKFDKKGAKNMDEISKTLFAP-----IYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFS 75 (219)
T ss_dssp CCCCCCTTSHHHHHHHHHHHHTTTTT-----HHHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESC
T ss_pred ccchhhhhhhcchhhHHHHHHHhhcc-----ccHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECC
Confidence 4455555555 34455555432111 112222 33344444455 999999999999999998732499999999
Q ss_pred HHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 80 SVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 80 ~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
+.+++.+++++... .++.+.+.|+.+. +++.++||+|++..+++++ .+...+++++.++|+|||.+++.
T Consensus 76 ~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~~~ 147 (219)
T 3dlc_A 76 KHMNEIALKNIADANLNDRIQIVQGDVHNI-PIEDNYADLIVSRGSVFFW-------EDVATAFREIYRILKSGGKTYIG 147 (219)
T ss_dssp HHHHHHHHHHHHHTTCTTTEEEEECBTTBC-SSCTTCEEEEEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhccccCceEEEEcCHHHC-CCCcccccEEEECchHhhc-------cCHHHHHHHHHHhCCCCCEEEEE
Confidence 99999999986532 4799999999987 5778899999999999998 88899999999999999999997
Q ss_pred Ee
Q 028547 157 TY 158 (207)
Q Consensus 157 ~~ 158 (207)
..
T Consensus 148 ~~ 149 (219)
T 3dlc_A 148 GG 149 (219)
T ss_dssp EC
T ss_pred ec
Confidence 63
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=127.90 Aligned_cols=133 Identities=20% Similarity=0.332 Sum_probs=102.8
Q ss_pred chhhhhcccCCceeeecC-ccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC
Q 028547 15 YWDNRYAHESGPFDWYQK-YPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR 93 (207)
Q Consensus 15 ~w~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~ 93 (207)
||+++|...... |... ...+..++... + +. +|||+|||+|.++..+++.+. +++++|+++.+++.++++....
T Consensus 1 ~W~~~y~~~~~~--~~~~~~~~l~~~~~~~-~-~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~ 74 (202)
T 2kw5_A 1 MWDERFSQSEYV--YGTEPNDFLVSVANQI-P-QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEK 74 (202)
T ss_dssp CCCCCCCCCCCC--CCCCCCSSHHHHHHHS-C-SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHH
T ss_pred Chhhhhcccchh--hccCchHHHHHHHHhC-C-CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhc
Confidence 688888765322 2222 23455555543 3 34 999999999999999999876 9999999999999999886532
Q ss_pred -CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 94 -PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 94 -~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.++.+.+.|+.+. +++.++||+|++.. .++ ...+...+++++.++|+|||.+++.++...
T Consensus 75 ~~~~~~~~~d~~~~-~~~~~~fD~v~~~~--~~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 135 (202)
T 2kw5_A 75 GVKITTVQSNLADF-DIVADAWEGIVSIF--CHL-----PSSLRQQLYPKVYQGLKPGGVFILEGFAPE 135 (202)
T ss_dssp TCCEEEECCBTTTB-SCCTTTCSEEEEEC--CCC-----CHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred CCceEEEEcChhhc-CCCcCCccEEEEEh--hcC-----CHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 3789999999987 56778999999853 222 347889999999999999999999986544
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=131.90 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=97.7
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEE
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
.++..+...++.+|||+|||+|.++..+++.+..+++++|+++.+++.++++.....++.+++.|+.+. +++.++||+|
T Consensus 84 ~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v 162 (254)
T 1xtp_A 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA-TLPPNTYDLI 162 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGC-CCCSSCEEEE
T ss_pred HHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHC-CCCCCCeEEE
Confidence 344444333445999999999999999988866579999999999999999887556789999999987 5677899999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++..+++++ +..+...+++++.++|+|||.+++.+.
T Consensus 163 ~~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 163 VIQWTAIYL-----TDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp EEESCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcchhhhC-----CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 999999988 446789999999999999999999874
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=134.41 Aligned_cols=114 Identities=20% Similarity=0.383 Sum_probs=97.6
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCe
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~f 114 (207)
.++..+..+. .+|||+|||+|.++..+++.+. +++++|+++.+++.+++++... .++.++++|+.+..++..++|
T Consensus 60 ~~l~~~~~~~-~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~f 137 (285)
T 4htf_A 60 RVLAEMGPQK-LRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPV 137 (285)
T ss_dssp HHHHHTCSSC-CEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCE
T ss_pred HHHHhcCCCC-CEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCc
Confidence 4444444444 4999999999999999999876 9999999999999999987643 478999999999854678999
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
|+|++..+++++ .+...+++++.++|+|||.+++.++..
T Consensus 138 D~v~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (285)
T 4htf_A 138 DLILFHAVLEWV-------ADPRSVLQTLWSVLRPGGVLSLMFYNA 176 (285)
T ss_dssp EEEEEESCGGGC-------SCHHHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred eEEEECchhhcc-------cCHHHHHHHHHHHcCCCeEEEEEEeCC
Confidence 999999999998 788999999999999999999988643
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=132.21 Aligned_cols=101 Identities=20% Similarity=0.346 Sum_probs=89.3
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc-cccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-DEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+|||+|||+|.++..+++.+. +++|+|+++.+++.++++ +.++..|+.+. .++++++||+|++..+++++
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~------~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~- 114 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK------FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL- 114 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT------SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS-
T ss_pred CeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh------cceeeccHHHHhhhcCCCCeeEEEECCchhhC-
Confidence 4999999999999999999877 899999999999999875 68899998885 25678999999999999998
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+..+...+++++.++|+|||.+++.+....
T Consensus 115 ----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 144 (240)
T 3dli_A 115 ----DPERLFELLSLCYSKMKYSSYIVIESPNPT 144 (240)
T ss_dssp ----CGGGHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred ----CcHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 445779999999999999999999886543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-18 Score=129.22 Aligned_cols=111 Identities=19% Similarity=0.367 Sum_probs=95.5
Q ss_pred HHHhhCC-CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEE
Q 028547 39 LIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 39 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
.+...++ .++.+|||+|||+|.++..+++.+..+++++|+++.+++.++++... .++.+.+.|+.+. +++.++||+|
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~-~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD-TGITYERADLDKL-HLPQDSFDLA 111 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS-SSEEEEECCGGGC-CCCTTCEEEE
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc-CCceEEEcChhhc-cCCCCCceEE
Confidence 3444444 34459999999999999999998666999999999999999998765 4789999999987 5677899999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++..+++++ .+...++++++++|+|||.+++.+.
T Consensus 112 ~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 112 YSSLALHYV-------EDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp EEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEecccccc-------chHHHHHHHHHHhcCcCcEEEEEeC
Confidence 999999988 6889999999999999999999874
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.4e-19 Score=136.13 Aligned_cols=146 Identities=15% Similarity=0.198 Sum_probs=105.2
Q ss_pred CCChhchhhhhcccCCceeee--cCc--cCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHH
Q 028547 10 YGEPWYWDNRYAHESGPFDWY--QKY--PSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA 85 (207)
Q Consensus 10 ~~~~~~w~~~~~~~~~~~~~~--~~~--~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~ 85 (207)
|....||+.+|......+... ... +.+..++.. ...++.+|||+|||+|.++..++..+..+|+++|+++.+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~ 94 (265)
T 2i62_A 16 FNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCL-GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWE 94 (265)
T ss_dssp CCHHHHHHHHHCCCSSCHHHHHHHHHHHHHHHHHHHS-SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHH
T ss_pred cCHHHHHHHHhCcCCcchhHHHHHHhhHHHHHHHhcc-cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHH
Confidence 455678888887654332110 000 011122222 122334999999999999999988865689999999999999
Q ss_pred HHHHccCCCC-------------------------------c-eEEEeccccccccCC---CCeeEEEeCcchhhhccCC
Q 028547 86 MMKKYSNRPQ-------------------------------L-KYIKMDVRQMDEFQT---GSFDSVVDKGTLDSLLCGS 130 (207)
Q Consensus 86 ~~~~~~~~~~-------------------------------~-~~~~~d~~~~~~~~~---~~fD~v~~~~~l~~~~~~~ 130 (207)
+++++..... + .+.++|+.+..+.+. ++||+|++..+++++.
T Consensus 95 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~--- 171 (265)
T 2i62_A 95 LQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAAC--- 171 (265)
T ss_dssp HHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC---
T ss_pred HHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhc---
Confidence 9988765321 6 899999998744445 7999999999999541
Q ss_pred CChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 131 NSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 131 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
....+...+++++.++|+|||.+++.+..
T Consensus 172 ~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 200 (265)
T 2i62_A 172 PDLPAYRTALRNLGSLLKPGGFLVMVDAL 200 (265)
T ss_dssp SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred CChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence 11268899999999999999999998743
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-18 Score=130.36 Aligned_cols=105 Identities=13% Similarity=0.182 Sum_probs=91.0
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccC-----CCCeeEEEeCcch
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ-----TGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~fD~v~~~~~l 123 (207)
.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++... .++.++++|+.+.. .. ...||+|++..++
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~-~~~~~~~~~~~d~v~~~~~~ 134 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA-ANISYRLLDGLVPE-QAAQIHSEIGDANIYMRTGF 134 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC-TTEEEEECCTTCHH-HHHHHHHHHCSCEEEEESSS
T ss_pred CeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc-cCceEEECcccccc-cccccccccCccEEEEcchh
Confidence 4999999999999999999877 999999999999999998843 58999999999862 21 1248999999999
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+++ +..+...+++++.++|+|||.+++..+..+
T Consensus 135 ~~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 167 (245)
T 3ggd_A 135 HHI-----PVEKRELLGQSLRILLGKQGAMYLIELGTG 167 (245)
T ss_dssp TTS-----CGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred hcC-----CHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 988 445889999999999999999999887554
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=135.72 Aligned_cols=137 Identities=13% Similarity=0.291 Sum_probs=104.8
Q ss_pred CCCChhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc--CCCcEEEEeCCHHHHHHH
Q 028547 9 AYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAM 86 (207)
Q Consensus 9 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~i~~~ 86 (207)
.|.+..|-.+.|......+ ...+.+.+..+...++.+|||+|||+|.++..+++. ...+|+|+|+++.+++.+
T Consensus 3 ~f~~~~~~~~~y~~~rp~y-----~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a 77 (299)
T 3g5t_A 3 TFSASDFNSERYSSSRPSY-----PSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTA 77 (299)
T ss_dssp GGGSTTCCHHHHHHHSCCC-----CHHHHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHH
T ss_pred cccccccChHHHhhcCCCC-----CHHHHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHH
Confidence 3455555555554332111 223556666655545559999999999999999963 345999999999999999
Q ss_pred HHHccC----CCCceEEEeccccccccCC------CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 87 MKKYSN----RPQLKYIKMDVRQMDEFQT------GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 87 ~~~~~~----~~~~~~~~~d~~~~~~~~~------~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
+++... ..++.|+++|+.++ ++.. ++||+|++..+++++ +...+++++.++|+|||.+++.
T Consensus 78 ~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~~~fD~V~~~~~l~~~--------~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 78 EVIKEGSPDTYKNVSFKISSSDDF-KFLGADSVDKQKIDMITAVECAHWF--------DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp HHHHHHCC-CCTTEEEEECCTTCC-GGGCTTTTTSSCEEEEEEESCGGGS--------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhccCCCCceEEEEcCHHhC-CccccccccCCCeeEEeHhhHHHHh--------CHHHHHHHHHHhcCCCcEEEEE
Confidence 998643 36899999999987 4565 799999999999975 6789999999999999999986
Q ss_pred EeC
Q 028547 157 TYG 159 (207)
Q Consensus 157 ~~~ 159 (207)
.+.
T Consensus 149 ~~~ 151 (299)
T 3g5t_A 149 GYA 151 (299)
T ss_dssp EEE
T ss_pred ecC
Confidence 543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-18 Score=127.57 Aligned_cols=100 Identities=25% Similarity=0.422 Sum_probs=89.9
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~ 128 (207)
.+|||+|||+|.++..+++.+. +++++|+++.+++.++++. ++.+.+.|+.+. + ..++||+|++..+++++
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~----~~~~~~~d~~~~-~-~~~~fD~v~~~~~l~~~-- 115 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL----GRPVRTMLFHQL-D-AIDAYDAVWAHACLLHV-- 115 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH----TSCCEECCGGGC-C-CCSCEEEEEECSCGGGS--
T ss_pred CcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc----CCceEEeeeccC-C-CCCcEEEEEecCchhhc--
Confidence 4999999999999999999876 9999999999999999986 578899999988 3 67899999999999998
Q ss_pred CCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+..+...+++++.++|+|||.+++.....
T Consensus 116 ---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 144 (211)
T 3e23_A 116 ---PRDELADVLKLIWRALKPGGLFYASYKSG 144 (211)
T ss_dssp ---CHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ---CHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 45588999999999999999999987543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.8e-18 Score=129.41 Aligned_cols=115 Identities=20% Similarity=0.286 Sum_probs=98.5
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCe
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~f 114 (207)
...+.....+++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++... ..++.+.+.|+.++ ++++++|
T Consensus 11 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~f 88 (239)
T 1xxl_A 11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-PFPDDSF 88 (239)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-CSCTTCE
T ss_pred chHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC-CCCCCcE
Confidence 4455555555556999999999999999999876 999999999999999987652 25799999999887 6778899
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
|+|++..+++++ .+...+++++.++|+|||.+++.....
T Consensus 89 D~v~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 89 DIITCRYAAHHF-------SDVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp EEEEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred EEEEECCchhhc-------cCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 999999999998 788999999999999999999987543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-18 Score=134.06 Aligned_cols=119 Identities=17% Similarity=0.290 Sum_probs=97.7
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-----CCceEEEeccccccccC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQMDEFQ 110 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-----~~~~~~~~d~~~~~~~~ 110 (207)
+..++..+..+.. +|||+|||+|.++..+++.+. +|+++|+++.+++.++++.... .++.++++|+.++ ++
T Consensus 72 ~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~-~~- 147 (299)
T 3g2m_A 72 AREFATRTGPVSG-PVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF-AL- 147 (299)
T ss_dssp HHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC-CC-
T ss_pred HHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC-Cc-
Confidence 3445555544555 999999999999999999876 9999999999999999987653 4799999999997 44
Q ss_pred CCCeeEEEeC-cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 111 TGSFDSVVDK-GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 111 ~~~fD~v~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
.++||+|++. .+++++ +..+...+++++.++|+|||.+++.++.....
T Consensus 148 ~~~fD~v~~~~~~~~~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 196 (299)
T 3g2m_A 148 DKRFGTVVISSGSINEL-----DEADRRGLYASVREHLEPGGKFLLSLAMSEAA 196 (299)
T ss_dssp SCCEEEEEECHHHHTTS-----CHHHHHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred CCCcCEEEECCcccccC-----CHHHHHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence 6899988864 556655 44678999999999999999999998766543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=132.32 Aligned_cols=106 Identities=14% Similarity=0.201 Sum_probs=90.8
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+.+|||+|||+|.++..+++.+..+++++|+++.+++.+++++... .++.+++.|+.+. +++.++||+|++..++++
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF-TPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC-CCCSSCEEEEEEESCGGG
T ss_pred CCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhc-CCCCCCEEEEEEcchhhh
Confidence 4599999999999999998886569999999999999999987642 3688999998887 456678999999999998
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+ +......+++++.++|+|||.+++.+..
T Consensus 159 ~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 187 (241)
T 2ex4_A 159 L-----TDQHLAEFLRRCKGSLRPNGIIVIKDNM 187 (241)
T ss_dssp S-----CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred C-----CHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 8 3344669999999999999999997753
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-18 Score=127.56 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=98.9
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC-C-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-Y-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQT 111 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~ 111 (207)
...++..+...++.+|||+|||+|.++..+++.+ . .+++++|+++.+++.+++++.. ..++.+.+.|+.+. +++.
T Consensus 26 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~ 104 (219)
T 3dh0_A 26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKI-PLPD 104 (219)
T ss_dssp HHHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBC-SSCS
T ss_pred HHHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccC-CCCC
Confidence 3455555544445599999999999999999875 2 4999999999999999998652 24799999999987 5778
Q ss_pred CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++||+|++..+++++ .+...+++++.++|+|||.+++.++..
T Consensus 105 ~~fD~v~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 146 (219)
T 3dh0_A 105 NTVDFIFMAFTFHEL-------SEPLKFLEELKRVAKPFAYLAIIDWKK 146 (219)
T ss_dssp SCEEEEEEESCGGGC-------SSHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred CCeeEEEeehhhhhc-------CCHHHHHHHHHHHhCCCeEEEEEEecc
Confidence 899999999999998 788999999999999999999987643
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=133.28 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=90.7
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.++++.... .++.+++.|+.+. +++.++||+|++..++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~i~~~~~~ 124 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL-PFRNEELDLIWSEGAI 124 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CCCTTCEEEEEESSCG
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC-CCCCCCEEEEEEcCCc
Confidence 34599999999999999999985569999999999999999986532 4699999999887 5778899999999999
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+++ +...+++++.++|+|||.+++.+.
T Consensus 125 ~~~--------~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 125 YNI--------GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp GGT--------CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred eec--------CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 986 468899999999999999999874
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-18 Score=131.26 Aligned_cols=110 Identities=24% Similarity=0.461 Sum_probs=94.0
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEE
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
.++..+...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++++. +++.+.++|+.++ ++ .++||+|
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~-~~-~~~fD~v 121 (279)
T 3ccf_A 48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY---PHLHFDVADARNF-RV-DKPLDAV 121 (279)
T ss_dssp HHHHHHCCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC---TTSCEEECCTTTC-CC-SSCEEEE
T ss_pred HHHHHhCCCCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC---CCCEEEECChhhC-Cc-CCCcCEE
Confidence 344444334445999999999999999999655 9999999999999999886 5789999999987 44 5799999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++..+++++ .+...++++++++|+|||.+++.+...
T Consensus 122 ~~~~~l~~~-------~d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 122 FSNAMLHWV-------KEPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp EEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EEcchhhhC-------cCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 999999998 788999999999999999999987654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.76 E-value=9.5e-18 Score=125.28 Aligned_cols=106 Identities=16% Similarity=0.306 Sum_probs=89.9
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-------CCceEEEeccccccccCCCCeeEE
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-------PQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
.++.+|||+|||+|.++..+++.+. .+++++|+++.+++.+++++... .++.++++|+... +...++||+|
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v 106 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ-DKRFHGYDAA 106 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC-CGGGCSCSEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc-cccCCCcCEE
Confidence 3445999999999999999999764 59999999999999999987633 2799999998766 4566899999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
++..+++++ +..+...+++++.++|+|||.+++..
T Consensus 107 ~~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 107 TVIEVIEHL-----DLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp EEESCGGGC-----CHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred eeHHHHHcC-----CHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 999999998 44566999999999999999776654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-18 Score=132.73 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=92.1
Q ss_pred CCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccC--C-CCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~--~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
.++.+|||+|||+|.++..+++. +. +++++|+++.+++.++++... . .++.+.++|+.++ ++++++||+|++..
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-PCEDNSYDFIWSQD 158 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-SSCTTCEEEEEEES
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-CCCCCCEeEEEecc
Confidence 34459999999999999999887 55 999999999999999987642 1 4799999999987 67888999999999
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+++++ .+...+++++.++|+|||.+++.+..
T Consensus 159 ~l~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 189 (297)
T 2o57_A 159 AFLHS-------PDKLKVFQECARVLKPRGVMAITDPM 189 (297)
T ss_dssp CGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhhc-------CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 99998 67899999999999999999998753
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-18 Score=132.32 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=95.7
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCe
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (207)
.+...+....++.. +|||+|||+|.++..+++.+. +++++|+++.+++.++++.. ++.++++|+.+. +. .++|
T Consensus 39 ~~~~~l~~~~~~~~-~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~---~~~~~~~d~~~~-~~-~~~f 111 (263)
T 3pfg_A 39 DLAALVRRHSPKAA-SLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP---DAVLHHGDMRDF-SL-GRRF 111 (263)
T ss_dssp HHHHHHHHHCTTCC-EEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT---TSEEEECCTTTC-CC-SCCE
T ss_pred HHHHHHHhhCCCCC-cEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC---CCEEEECChHHC-Cc-cCCc
Confidence 34555555555555 999999999999999999876 99999999999999999874 789999999997 34 7899
Q ss_pred eEEEeCc-chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 115 DSVVDKG-TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 115 D~v~~~~-~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
|+|++.. +++++ .+..+...+++++.++|+|||.+++..+..
T Consensus 112 D~v~~~~~~l~~~----~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 154 (263)
T 3pfg_A 112 SAVTCMFSSIGHL----AGQAELDAALERFAAHVLPDGVVVVEPWWF 154 (263)
T ss_dssp EEEEECTTGGGGS----CHHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred CEEEEcCchhhhc----CCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 9999997 88887 122577899999999999999999975433
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=125.16 Aligned_cols=105 Identities=13% Similarity=0.286 Sum_probs=88.9
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-------CCceEEEeccccccccCCCCeeEEE
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-------PQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
++.+|||+|||+|.++..+++.+. .+++++|+++.+++.+++++... .++.++++|+... +...++||+|+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~ 107 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR-DKRFSGYDAAT 107 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC-CGGGTTCSEEE
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc-ccccCCCCEEE
Confidence 345999999999999999999764 59999999999999999987532 2799999999766 45678999999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+..+++++ +..+...+++++.++|+|||.++...
T Consensus 108 ~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 108 VIEVIEHL-----DENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp EESCGGGC-----CHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred EHHHHHhC-----CHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 99999998 44466899999999999999666544
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-18 Score=130.08 Aligned_cols=113 Identities=17% Similarity=0.300 Sum_probs=94.1
Q ss_pred HHHHHHhhC-CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCe
Q 028547 36 LAPLIKLYV-PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 36 ~~~~l~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (207)
+...+...+ ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++. ++.|++.|+.+. +++.++|
T Consensus 22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~----~~~~~~~d~~~~-~~~~~~f 95 (261)
T 3ege_A 22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP----QVEWFTGYAENL-ALPDKSV 95 (261)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT----TEEEECCCTTSC-CSCTTCB
T ss_pred HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc----CCEEEECchhhC-CCCCCCE
Confidence 344343333 33445999999999999999998765 9999999999988776654 899999999887 6788999
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
|+|++..+++++ .+...++++++++|+ ||.+++.++....
T Consensus 96 D~v~~~~~l~~~-------~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~ 135 (261)
T 3ege_A 96 DGVISILAIHHF-------SHLEKSFQEMQRIIR-DGTIVLLTFDIRL 135 (261)
T ss_dssp SEEEEESCGGGC-------SSHHHHHHHHHHHBC-SSCEEEEEECGGG
T ss_pred eEEEEcchHhhc-------cCHHHHHHHHHHHhC-CcEEEEEEcCCch
Confidence 999999999998 889999999999999 9988888875443
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-17 Score=122.44 Aligned_cols=116 Identities=12% Similarity=0.115 Sum_probs=95.4
Q ss_pred HHHHHHhhC-CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCe
Q 028547 36 LAPLIKLYV-PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 36 ~~~~l~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (207)
+..++..+. .+++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++ ....++.++++|+.+. ++.++|
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~--~~~~~~~~~~~d~~~~--~~~~~~ 108 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR--HGLDNVEFRQQDLFDW--TPDRQW 108 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG--GCCTTEEEEECCTTSC--CCSSCE
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh--cCCCCeEEEecccccC--CCCCce
Confidence 334444433 22334999999999999999999866 99999999999999988 2235899999999887 577899
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|+|++..+++++ +......+++++.++|+|||.+++.++..+
T Consensus 109 D~v~~~~~l~~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 150 (218)
T 3ou2_A 109 DAVFFAHWLAHV-----PDDRFEAFWESVRSAVAPGGVVEFVDVTDH 150 (218)
T ss_dssp EEEEEESCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred eEEEEechhhcC-----CHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 999999999998 334469999999999999999999987654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=123.80 Aligned_cols=110 Identities=23% Similarity=0.353 Sum_probs=94.2
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeE
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
..++..+..+. .+|||+|||+|.++..+ +..+++++|+++.+++.++++. .++.+++.|+.+. ++++++||+
T Consensus 27 ~~~l~~~~~~~-~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~-~~~~~~fD~ 98 (211)
T 2gs9_A 27 ERALKGLLPPG-ESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA---PEATWVRAWGEAL-PFPGESFDV 98 (211)
T ss_dssp HHHHHTTCCCC-SEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC---TTSEEECCCTTSC-CSCSSCEEE
T ss_pred HHHHHHhcCCC-CeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcccccC-CCCCCcEEE
Confidence 34555555544 49999999999999887 4448999999999999999987 5789999999887 577889999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|++..+++++ .+...+++++.++|+|||.+++.++...
T Consensus 99 v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 99 VLLFTTLEFV-------EDVERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp EEEESCTTTC-------SCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEcChhhhc-------CCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 9999999998 6889999999999999999999886554
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-17 Score=128.31 Aligned_cols=104 Identities=18% Similarity=0.252 Sum_probs=91.3
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++.... .++.+.+.|+.+.. . .++||+|++..++++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAAN-I-QENYDFIVSTVVFMF 196 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCC-C-CSCEEEEEECSSGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCceEEEEecccccc-c-cCCccEEEEccchhh
Confidence 334999999999999999999977 9999999999999999987633 37999999999873 3 789999999999998
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+ +......+++++.++|+|||.+++...
T Consensus 197 ~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 197 L-----NRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp S-----CGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred C-----CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 8 557788999999999999999887664
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-17 Score=120.53 Aligned_cols=114 Identities=21% Similarity=0.398 Sum_probs=96.2
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeE
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
..++..++++.. +|||+|||+|.++..+++.+. +++++|+++.+++.++++. .++.+.+.|+.+. +++.++||+
T Consensus 37 ~~~l~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~---~~~~~~~~d~~~~-~~~~~~~D~ 110 (195)
T 3cgg_A 37 ARLIDAMAPRGA-KILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF---PEARWVVGDLSVD-QISETDFDL 110 (195)
T ss_dssp HHHHHHHSCTTC-EEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC---TTSEEEECCTTTS-CCCCCCEEE
T ss_pred HHHHHHhccCCC-eEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC---CCCcEEEcccccC-CCCCCceeE
Confidence 346666655555 999999999999999999866 9999999999999999987 3689999999987 466789999
Q ss_pred EEeC-cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 117 VVDK-GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 117 v~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|++. .+++++ +..+...+++++.++|+|||.+++......
T Consensus 111 i~~~~~~~~~~-----~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~ 151 (195)
T 3cgg_A 111 IVSAGNVMGFL-----AEDGREPALANIHRALGADGRAVIGFGAGR 151 (195)
T ss_dssp EEECCCCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred EEECCcHHhhc-----ChHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 9998 677766 456779999999999999999999876543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=128.89 Aligned_cols=106 Identities=21% Similarity=0.336 Sum_probs=92.1
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
.++.+|||+|||+|.++..+++....+|+++|+++.+++.++++.... .++.+..+|+.+. ++++++||+|++..+
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~ 138 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL-PFEDASFDAVWALES 138 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC-CCCCCCccEEEEech
Confidence 344599999999999999998853349999999999999999886532 4699999999987 677889999999999
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
++++ .+...+++++.++|+|||.+++.++.
T Consensus 139 l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 139 LHHM-------PDRGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp TTTS-------SCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred hhhC-------CCHHHHHHHHHHHcCCCeEEEEEEee
Confidence 9998 77899999999999999999998754
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=120.52 Aligned_cols=121 Identities=10% Similarity=0.092 Sum_probs=88.3
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCee
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
.++...+.+.. +|||+|||+|.++..+++.+. +|+++|+++.+++.++++... ..++.+++.+...+..+.+++||
T Consensus 14 ~~l~~~~~~~~-~vLDiGcG~G~~~~~la~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD 91 (185)
T 3mti_A 14 DFLAEVLDDES-IVVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIR 91 (185)
T ss_dssp HHHHTTCCTTC-EEEESCCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEE
T ss_pred HHHHHhCCCCC-EEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcC
Confidence 34444444444 999999999999999999844 999999999999999998762 25789999887776435578899
Q ss_pred EEEeCc-chhhhc-cCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 116 SVVDKG-TLDSLL-CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 116 ~v~~~~-~l~~~~-~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+|+++. .+..-. ...........+++++.++|+|||.+++..+..
T Consensus 92 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 138 (185)
T 3mti_A 92 AAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG 138 (185)
T ss_dssp EEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred EEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 999762 222100 000123566788999999999999999988754
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=123.80 Aligned_cols=117 Identities=31% Similarity=0.495 Sum_probs=95.8
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCe
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~f 114 (207)
+...+...+++. .+|||+|||+|.++..+++.+. +++++|+++.+++.++++.... .++.++++|+.+. +++.++|
T Consensus 28 ~~~~l~~~~~~~-~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~~ 104 (227)
T 1ve3_A 28 LEPLLMKYMKKR-GKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL-SFEDKTF 104 (227)
T ss_dssp HHHHHHHSCCSC-CEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC-CSCTTCE
T ss_pred HHHHHHHhcCCC-CeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcC-CCCCCcE
Confidence 344444445554 4999999999999999999877 9999999999999999886532 6799999999987 4677899
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
|+|++..+++.. ...+...+++++.++|+|||.+++.....
T Consensus 105 D~v~~~~~~~~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 145 (227)
T 1ve3_A 105 DYVIFIDSIVHF-----EPLELNQVFKEVRRVLKPSGKFIMYFTDL 145 (227)
T ss_dssp EEEEEESCGGGC-----CHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred EEEEEcCchHhC-----CHHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence 999999884332 22788999999999999999999987653
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.6e-18 Score=128.71 Aligned_cols=113 Identities=16% Similarity=0.115 Sum_probs=93.6
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~ 113 (207)
..++......++.+|||+|||+|.++..+++....+++++|+++.+++.++++.... .++.+.++|+.+. ++ +++
T Consensus 26 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~-~~~ 103 (256)
T 1nkv_A 26 ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VA-NEK 103 (256)
T ss_dssp HHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CC-SSC
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC-Cc-CCC
Confidence 344444433444599999999999999998863339999999999999999887532 4799999999987 44 789
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
||+|++..+++++ .+...+++++.++|+|||.+++.+.
T Consensus 104 fD~V~~~~~~~~~-------~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 104 CDVAACVGATWIA-------GGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp EEEEEEESCGGGT-------SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCEEEECCChHhc-------CCHHHHHHHHHHHcCCCeEEEEecC
Confidence 9999999999987 6789999999999999999999763
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-17 Score=126.32 Aligned_cols=100 Identities=19% Similarity=0.334 Sum_probs=90.0
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. ..++.+.++|+.+. ++++++||+|++..+++++
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~ 117 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAI-PLPDESVHGVIVVHLWHLV 117 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSC-CSCTTCEEEEEEESCGGGC
T ss_pred CCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccC-CCCCCCeeEEEECCchhhc
Confidence 34999999999999999998865 999999999999999998732 26899999999887 5778899999999999998
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.+...+++++.++|+|||.+++.
T Consensus 118 -------~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 118 -------PDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp -------TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred -------CCHHHHHHHHHHHCCCCcEEEEE
Confidence 68899999999999999999987
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=129.21 Aligned_cols=116 Identities=22% Similarity=0.356 Sum_probs=97.0
Q ss_pred CHHHHHHhhCC-CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccC
Q 028547 35 SLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQ 110 (207)
Q Consensus 35 ~~~~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~ 110 (207)
.+...+..... .++.+|||+|||+|.++..+++.+. .+++++|+++.+++.+++++.. .+++.+.+.|+.+. +++
T Consensus 24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~~~ 102 (276)
T 3mgg_A 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL-PFE 102 (276)
T ss_dssp HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGC-CSC
T ss_pred HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccC-CCC
Confidence 44555544332 3335999999999999999999853 5999999999999999998653 25799999999987 577
Q ss_pred CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.++||+|++..+++++ .+...+++++.++|+|||.+++.+.
T Consensus 103 ~~~fD~v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 103 DSSFDHIFVCFVLEHL-------QSPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp TTCEEEEEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCeeEEEEechhhhc-------CCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 8999999999999998 7788999999999999999999763
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.4e-17 Score=118.32 Aligned_cols=109 Identities=11% Similarity=0.065 Sum_probs=90.8
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccc-cCCCCeeEEEeCcc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDE-FQTGSFDSVVDKGT 122 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~-~~~~~fD~v~~~~~ 122 (207)
.++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++... .+++++++|+.+..+ ++.++||+|+++.+
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 344599999999999999888887668999999999999999987532 579999999998632 34689999999988
Q ss_pred hhhhccCCCChhhHHHHHHHHHH--hcCCCcEEEEEEeCC
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWR--VLKDKGVYILVTYGA 160 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~--~L~pgG~~~~~~~~~ 160 (207)
+++. ..+...+++.+.+ +|+|||.+++.....
T Consensus 123 ~~~~------~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 123 YNVD------SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TTSC------HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCcc------hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 7652 3678899999999 999999999987543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.7e-18 Score=127.27 Aligned_cols=120 Identities=14% Similarity=0.146 Sum_probs=90.8
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccc-cccCCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQM-DEFQTGS 113 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~-~~~~~~~ 113 (207)
+.+.+......++.+|||||||+|..+..+++....+++++|+++.+++.++++.... .+++++.+|+.+. .++++++
T Consensus 49 ~m~~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 128 (236)
T 3orh_A 49 YMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGH 128 (236)
T ss_dssp HHHHHHHHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTC
T ss_pred HHHHHHHhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccC
Confidence 3344444444555599999999999999999876669999999999999999987643 5688888888764 3467889
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
||.|+...+.... ......+...++++++++|||||+|++..
T Consensus 129 FD~i~~D~~~~~~--~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 129 FDGILYDTYPLSE--ETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp EEEEEECCCCCBG--GGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred CceEEEeeeeccc--chhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 9999854322111 00122788999999999999999998754
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-17 Score=125.44 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=94.0
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCee
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
..++..+...++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++. +++.+.+.|+.+. + +.++||
T Consensus 23 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~~~~d~~~~-~-~~~~fD 97 (259)
T 2p35_A 23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL---PNTNFGKADLATW-K-PAQKAD 97 (259)
T ss_dssp HHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS---TTSEEEECCTTTC-C-CSSCEE
T ss_pred HHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---CCcEEEECChhhc-C-ccCCcC
Confidence 344444433444599999999999999998872 239999999999999999883 5789999999987 4 678999
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+|++..+++++ .+...++++++++|+|||.+++.+..
T Consensus 98 ~v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 98 LLYANAVFQWV-------PDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp EEEEESCGGGS-------TTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred EEEEeCchhhC-------CCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 99999999998 78999999999999999999998754
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-18 Score=131.66 Aligned_cols=111 Identities=19% Similarity=0.286 Sum_probs=91.2
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccc---cCCCCeeEE
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDE---FQTGSFDSV 117 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~---~~~~~fD~v 117 (207)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++... ..++.+..+|+.++ + ++.++||+|
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~fD~V 134 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL-DKDVPAGDGFDAV 134 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH-HHHSCCTTCEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhC-ccccccCCCeEEE
Confidence 335999999999999999999987 999999999999999886521 14678899998886 4 567899999
Q ss_pred EeC-cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 118 VDK-GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 118 ~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
++. .+++|+.....+.+....++++++++|+|||.+++.+..
T Consensus 135 ~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 998 899988211112355999999999999999999998743
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-17 Score=125.38 Aligned_cols=111 Identities=14% Similarity=0.231 Sum_probs=87.4
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc----cCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----FQTG 112 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~ 112 (207)
..++......++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.... ++..++.+... ...+
T Consensus 35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~~~~~~~~ 109 (261)
T 3iv6_A 35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAEIPKELAG 109 (261)
T ss_dssp HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSCCCGGGTT
T ss_pred HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc----cceeeeeecccccccccCC
Confidence 3444444334445999999999999999999977 9999999999999999998653 33444444321 1257
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+||+|+++.+++++ ..++...+++++.++| |||.+++...
T Consensus 110 ~fD~Vv~~~~l~~~-----~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 110 HFDFVLNDRLINRF-----TTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp CCSEEEEESCGGGS-----CHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred CccEEEEhhhhHhC-----CHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 89999999999987 5577889999999999 9999998763
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=126.13 Aligned_cols=101 Identities=18% Similarity=0.262 Sum_probs=89.3
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+|||+|||+|.++..+++.+..+|+++|+++.+++.++++.... .++.++++|+.++ +++.++||+|++..++++
T Consensus 48 ~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~ 126 (257)
T 3f4k_A 48 AKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-PFQNEELDLIWSEGAIYN 126 (257)
T ss_dssp CEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-SSCTTCEEEEEEESCSCC
T ss_pred CeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-CCCCCCEEEEEecChHhh
Confidence 499999999999999999986569999999999999999886532 3599999999887 577899999999999987
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+ +...+++++.++|+|||.+++.+.
T Consensus 127 ~--------~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 127 I--------GFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp C--------CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred c--------CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5 468899999999999999999874
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-17 Score=126.67 Aligned_cols=117 Identities=14% Similarity=0.218 Sum_probs=94.9
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCe
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~f 114 (207)
++..+..+++.+|||+|||+|.++..+++. + .+|+++|+|+.+++.++++.... .++.+..+|+.++ +++|
T Consensus 64 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~f 138 (302)
T 3hem_A 64 ALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----DEPV 138 (302)
T ss_dssp HHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----CCCC
T ss_pred HHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc----CCCc
Confidence 344443344459999999999999999988 6 49999999999999999987632 3789999999775 5789
Q ss_pred eEEEeCcchhhhccCCC---ChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 115 DSVVDKGTLDSLLCGSN---SRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~---~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|+|++..+++++. .+. +..+...+++++.++|+|||.+++.++..+
T Consensus 139 D~v~~~~~~~~~~-d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 139 DRIVSLGAFEHFA-DGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp SEEEEESCGGGTT-CCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred cEEEEcchHHhcC-ccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 9999999999871 111 336778999999999999999999886544
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=121.58 Aligned_cols=106 Identities=23% Similarity=0.354 Sum_probs=90.3
Q ss_pred CcEEEEcCCCchhh-HHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGNSAFS-EGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~G~~~-~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+|||+|||+|.++ ..++..+. +++++|+++.+++.++++... ..++.+.+.|+.+. +++.++||+|++..+++++
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~ 102 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKL-PFKDESMSFVYSYGTIFHM 102 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSC-CSCTTCEEEEEECSCGGGS
T ss_pred CEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhC-CCCCCceeEEEEcChHHhC
Confidence 49999999999984 45555555 999999999999999987652 25789999999987 5778899999999999887
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+..+...++++++++|+|||.+++.++..+
T Consensus 103 -----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 103 -----RKNDVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp -----CHHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred -----CHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 567899999999999999999999887554
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.8e-18 Score=120.72 Aligned_cols=100 Identities=19% Similarity=0.363 Sum_probs=88.7
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++ .+++.+...| . +++.++||+|++..+++++
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~~v~~~~~d---~-~~~~~~~D~v~~~~~l~~~ 88 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK---FDSVITLSDP---K-EIPDNSVDFILFANSFHDM 88 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH---CTTSEEESSG---G-GSCTTCEEEEEEESCSTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh---CCCcEEEeCC---C-CCCCCceEEEEEccchhcc
Confidence 334999999999999999999876 999999999999999998 3578999998 3 5677899999999999988
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.+...+++++.++|+|||.+++.++...
T Consensus 89 -------~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 116 (170)
T 3i9f_A 89 -------DDKQHVISEVKRILKDDGRVIIIDWRKE 116 (170)
T ss_dssp -------SCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred -------cCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence 7889999999999999999999886543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-17 Score=126.40 Aligned_cols=113 Identities=17% Similarity=0.239 Sum_probs=94.0
Q ss_pred hCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccccc-CCCCeeEEE
Q 028547 43 YVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEF-QTGSFDSVV 118 (207)
Q Consensus 43 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~-~~~~fD~v~ 118 (207)
.+.+.. +|||+|||+|.++..+++.+..+++++|+++.+++.++++.... .++.++++|+.+. ++ +.++||+|+
T Consensus 61 ~~~~~~-~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~fD~v~ 138 (298)
T 1ri5_A 61 YTKRGD-SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR-HMDLGKEFDVIS 138 (298)
T ss_dssp HCCTTC-EEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS-CCCCSSCEEEEE
T ss_pred hCCCCC-eEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc-ccCCCCCcCEEE
Confidence 344444 99999999999999998887669999999999999999987643 3589999999987 45 578999999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+..++++.. ....+...+++++.++|+|||.+++.+...
T Consensus 139 ~~~~l~~~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 139 SQFSFHYAF---STSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp EESCGGGGG---SSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred ECchhhhhc---CCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 999887621 133788999999999999999999988654
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=125.96 Aligned_cols=113 Identities=24% Similarity=0.404 Sum_probs=93.2
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCe
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (207)
.+..++...+++. .+|||+|||+|.++..+++.+. +++++|+++.+++.++++... .+.+.|+.+. +++.++|
T Consensus 43 ~~~~~l~~~~~~~-~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~----~~~~~d~~~~-~~~~~~f 115 (260)
T 2avn_A 43 LIGSFLEEYLKNP-CRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK----NVVEAKAEDL-PFPSGAF 115 (260)
T ss_dssp HHHHHHHHHCCSC-CEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS----CEEECCTTSC-CSCTTCE
T ss_pred HHHHHHHHhcCCC-CeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcCC----CEEECcHHHC-CCCCCCE
Confidence 3456666666644 4999999999999999999876 999999999999999998652 2888999887 5778899
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
|+|++..++.++ . .+...+++++.++|+|||.+++.+...
T Consensus 116 D~v~~~~~~~~~-----~-~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 116 EAVLALGDVLSY-----V-ENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp EEEEECSSHHHH-----C-SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred EEEEEcchhhhc-----c-ccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 999998766554 1 348999999999999999999987553
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-17 Score=128.20 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=90.5
Q ss_pred CCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 47 HHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
++.+|||+|||+|.++..+++. +. +|+++|+++.+++.++++.... .++.++++|+.+. +++.++||+|++..+
T Consensus 117 ~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~ 194 (312)
T 3vc1_A 117 PDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-PFDKGAVTASWNNES 194 (312)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CCCTTCEEEEEEESC
T ss_pred CCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-CCCCCCEeEEEECCc
Confidence 3459999999999999999987 55 9999999999999999986632 4799999999987 577899999999999
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++++ . ...+++++.++|+|||.+++.+.
T Consensus 195 l~~~-------~-~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 195 TMYV-------D-LHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp GGGS-------C-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhC-------C-HHHHHHHHHHHcCCCcEEEEEEc
Confidence 9987 2 89999999999999999999874
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=124.26 Aligned_cols=105 Identities=20% Similarity=0.283 Sum_probs=89.8
Q ss_pred CCCCcEEEEcCCCchhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
+++.+|||+|||+|.++..+++ .+. +|+|+|+++.+++.+++++... .++.+...|+.++ + ++||+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~-~~fD~v~~~~ 137 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF---D-EPVDRIVSIG 137 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC---C-CCCSEEEEES
T ss_pred CCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC---C-CCeeEEEEeC
Confidence 3445999999999999999984 455 9999999999999999987632 4789999999765 3 7899999999
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+++++ +..+...+++++.++|+|||.+++.++..
T Consensus 138 ~l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 138 AFEHF-----GHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp CGGGT-----CTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred chhhc-----ChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 99998 44678999999999999999999987543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=129.27 Aligned_cols=107 Identities=16% Similarity=0.231 Sum_probs=81.4
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCC--------------------------------C
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRP--------------------------------Q 95 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~--------------------------------~ 95 (207)
+.+|||+|||+|.+...++.....+|+|+|+|+.+++.+++++.... .
T Consensus 72 ~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 151 (289)
T 2g72_A 72 GRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARV 151 (289)
T ss_dssp CSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHE
T ss_pred CCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhh
Confidence 34999999999996655554333499999999999999988654210 1
Q ss_pred ceEEEeccccccc-----cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 96 LKYIKMDVRQMDE-----FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 96 ~~~~~~d~~~~~~-----~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+.++.+|+.+..+ ++.++||+|+++.+++++. ....+...++++++++|||||.|++..
T Consensus 152 ~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~---~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 152 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS---PDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC---SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ceEEecccCCCCCccccccCCCCCCEEEehhhhhhhc---CCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3566778887323 3456799999999999840 012689999999999999999999975
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=116.53 Aligned_cols=115 Identities=16% Similarity=0.288 Sum_probs=93.3
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCC--ceEEEeccccccccCCCC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQ--LKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~--~~~~~~d~~~~~~~~~~~ 113 (207)
.+++....+++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++.. ..+ +.+.+.|+.+. .+.++
T Consensus 43 ~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~ 119 (194)
T 1dus_A 43 ILVENVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN--VKDRK 119 (194)
T ss_dssp HHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT--CTTSC
T ss_pred HHHHHcccCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc--cccCC
Confidence 34444433444599999999999999999884 4999999999999999998753 244 89999999885 34678
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
||+|+++.++++ .......+++++.++|+|||.+++.+....
T Consensus 120 ~D~v~~~~~~~~------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 161 (194)
T 1dus_A 120 YNKIITNPPIRA------GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ 161 (194)
T ss_dssp EEEEEECCCSTT------CHHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred ceEEEECCCccc------chhHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 999999887775 236788999999999999999999887654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-17 Score=127.43 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=87.1
Q ss_pred CCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC---------------------------------
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR--------------------------------- 93 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~--------------------------------- 93 (207)
+++|||+|||+|.++..+++.. ..+|+|+|+++.+++.|++++...
T Consensus 47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (292)
T 3g07_A 47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF 126 (292)
T ss_dssp TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------------------
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence 3499999999999999999873 359999999999999999875421
Q ss_pred ---------------------------CCceEEEecccccc----ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHH
Q 028547 94 ---------------------------PQLKYIKMDVRQMD----EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKE 142 (207)
Q Consensus 94 ---------------------------~~~~~~~~d~~~~~----~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~ 142 (207)
.++.|.++|+.... ++..++||+|++..+++|+. ...+......++++
T Consensus 127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ih-l~~~~~~~~~~l~~ 205 (292)
T 3g07_A 127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVH-LNWGDEGLKRMFRR 205 (292)
T ss_dssp ---------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHH-HHHHHHHHHHHHHH
T ss_pred cchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhh-hcCCHHHHHHHHHH
Confidence 37999999998642 24678999999999997760 00012388999999
Q ss_pred HHHhcCCCcEEEEEE
Q 028547 143 VWRVLKDKGVYILVT 157 (207)
Q Consensus 143 ~~~~L~pgG~~~~~~ 157 (207)
++++|+|||.|++..
T Consensus 206 ~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 206 IYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHEEEEEEEEEEC
T ss_pred HHHHhCCCcEEEEec
Confidence 999999999999864
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-17 Score=123.68 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=87.1
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccc-cccCCCCeeEEEe-Cc
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQM-DEFQTGSFDSVVD-KG 121 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~-~~~~~~~fD~v~~-~~ 121 (207)
..++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.++++.... .++.++++|+.+. .++++++||+|++ ..
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 3344499999999999999998866569999999999999999987643 5789999999886 2467789999998 33
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.+ .. ..........++++++++|||||.+++..+
T Consensus 138 ~~-~~--~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 138 PL-SE--ETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CC-BG--GGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred cc-ch--hhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 32 11 001235667889999999999999998764
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=121.32 Aligned_cols=105 Identities=17% Similarity=0.290 Sum_probs=90.1
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCc-chhh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKG-TLDS 125 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~-~l~~ 125 (207)
+.+|||+|||+|.++..+++.+. +++++|+++.+++.++++.... .++.+.+.|+.+. +++ ++||+|++.. ++++
T Consensus 38 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~-~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 38 FDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL-NIN-RKFDLITCCLDSTNY 114 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGC-CCS-CCEEEEEECTTGGGG
T ss_pred CCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccC-Ccc-CCceEEEEcCccccc
Confidence 34999999999999999999876 8999999999999999987633 3789999999987 445 8899999998 8888
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+ .+..+...+++++.++|+|||.+++....
T Consensus 115 ~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 115 I----IDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp C----CSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred c----CCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 6 23368899999999999999999986643
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-16 Score=124.65 Aligned_cols=106 Identities=11% Similarity=0.202 Sum_probs=91.6
Q ss_pred CCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
.++.+|||+|||+|.++..+++. +. +|+++|+++.+++.++++.... .++.+...|+.+. + ++||+|++..
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~---~~fD~v~~~~ 163 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-A---EPVDRIVSIE 163 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-C---CCCSEEEEES
T ss_pred CCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC-C---CCcCEEEEeC
Confidence 34459999999999999999987 66 9999999999999999987642 4689999998776 2 7899999999
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+++++ +..+...+++++.++|+|||.+++.++...
T Consensus 164 ~l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 198 (318)
T 2fk8_A 164 AFEHF-----GHENYDDFFKRCFNIMPADGRMTVQSSVSY 198 (318)
T ss_dssp CGGGT-----CGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred hHHhc-----CHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 99988 557889999999999999999999886544
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=127.50 Aligned_cols=109 Identities=16% Similarity=0.241 Sum_probs=83.7
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCC--------CceEEEeccc------cc-cccCCC
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRP--------QLKYIKMDVR------QM-DEFQTG 112 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~--------~~~~~~~d~~------~~-~~~~~~ 112 (207)
+.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++..... ++.|.+.|+. ++ .+++.+
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~ 128 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFG 128 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSS
T ss_pred CCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCC
Confidence 34999999999987776666654599999999999999999865321 2567788773 22 124567
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+||+|+|..++|++ +.. .+...++++++++|||||.|++.+...
T Consensus 129 ~FD~V~~~~~lhy~-~~~---~~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 129 KFNIIDWQFAIHYS-FHP---RHYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp CEEEEEEESCGGGT-CST---TTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CeeEEEECchHHHh-CCH---HHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 99999999888865 111 245799999999999999999988643
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8.1e-17 Score=125.11 Aligned_cols=103 Identities=14% Similarity=0.200 Sum_probs=90.5
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+.+|||+|||+|.++..+++... .+|+++|+++.+++.+++++... .++.+.+.|+.+. ++ .++||+|++..+++
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~-~~-~~~fD~v~~~~~l~ 100 (284)
T 3gu3_A 23 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-EL-NDKYDIAICHAFLL 100 (284)
T ss_dssp CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CC-SSCEEEEEEESCGG
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhc-Cc-CCCeeEEEECChhh
Confidence 35999999999999999998732 49999999999999999987644 4899999999987 45 46999999999999
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
++ .+...++++++++|+|||.+++....
T Consensus 101 ~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 101 HM-------TTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GC-------SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cC-------CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 98 78899999999999999999988754
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-16 Score=119.99 Aligned_cols=114 Identities=22% Similarity=0.403 Sum_probs=90.6
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCee
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD 115 (207)
..++.....+++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++.... .++.++++|+.+. +. .++||
T Consensus 31 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~-~~-~~~fD 107 (252)
T 1wzn_A 31 EEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEI-AF-KNEFD 107 (252)
T ss_dssp HHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGC-CC-CSCEE
T ss_pred HHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhc-cc-CCCcc
Confidence 3444444334445999999999999999999877 9999999999999999887532 4789999999987 33 36899
Q ss_pred EEEeC-cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 116 SVVDK-GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 116 ~v~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+|++. ..++++ +..+...+++++.++|+|||.+++...
T Consensus 108 ~v~~~~~~~~~~-----~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 108 AVTMFFSTIMYF-----DEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp EEEECSSGGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEcCCchhcC-----CHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 99986 334443 346789999999999999999987653
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.4e-16 Score=114.65 Aligned_cols=110 Identities=12% Similarity=0.090 Sum_probs=88.1
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCee
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
++..+..+++.+|||+|||+|.++..+++.+. .+++++|+++.+++.++++... ..++.+++.|+.+..+ ...+||
T Consensus 32 ~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 110 (204)
T 3e05_A 32 TLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD-DLPDPD 110 (204)
T ss_dssp HHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT-TSCCCS
T ss_pred HHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh-cCCCCC
Confidence 34444344445999999999999999999863 5999999999999999988652 2579999999977532 336799
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+|++...++ +...+++++.++|+|||.+++....
T Consensus 111 ~i~~~~~~~----------~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 111 RVFIGGSGG----------MLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp EEEESCCTT----------CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred EEEECCCCc----------CHHHHHHHHHHhcCCCeEEEEEecc
Confidence 999876544 4578999999999999999998654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.2e-17 Score=121.46 Aligned_cols=120 Identities=13% Similarity=0.167 Sum_probs=91.3
Q ss_pred HhhCCCCCCcEEEEcCC-CchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEE
Q 028547 41 KLYVPSHHQRILIVGCG-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 41 ~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
...+.+. .+|||+||| +|.++..+++....+|+++|+++.+++.+++++... .++.++++|+....+++.++||+|+
T Consensus 50 ~~~~~~~-~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~ 128 (230)
T 3evz_A 50 KTFLRGG-EVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIF 128 (230)
T ss_dssp HTTCCSS-CEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEE
T ss_pred HhhcCCC-CEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEE
Confidence 3334444 499999999 999999999883239999999999999999987632 3799999998665455678999999
Q ss_pred eCcchhhhcc------------CCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 119 DKGTLDSLLC------------GSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 119 ~~~~l~~~~~------------~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
++.++++... +.........+++++.++|+|||.+++......
T Consensus 129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 183 (230)
T 3evz_A 129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE 183 (230)
T ss_dssp ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH
T ss_pred ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH
Confidence 9977754311 111223458899999999999999999775543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-16 Score=117.12 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=98.6
Q ss_pred CCCCChhchhhhhcccCCcee---eecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHH
Q 028547 8 QAYGEPWYWDNRYAHESGPFD---WYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE 84 (207)
Q Consensus 8 ~~~~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~ 84 (207)
..|....++...|......+. +.........++..+..+++.+|||+|||+|.++..+++.+. +|+++|+++.+++
T Consensus 35 ~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~v~~vD~~~~~~~ 113 (210)
T 3lbf_A 35 EKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQ-HVCSVERIKGLQW 113 (210)
T ss_dssp GGGSCGGGGGGTTSSSCEECTTSCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHH
T ss_pred HHcCCcchhhhccCCCccccCCCCEeCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEecCHHHHH
Confidence 345555566666654321111 111111233344444344445999999999999999999854 9999999999999
Q ss_pred HHHHHccC--CCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 85 AMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
.+++++.. ..++.+..+|+.+.. ...++||+|++...++++ . +.+.+.|+|||.+++....
T Consensus 114 ~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i~~~~~~~~~-------~------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 114 QARRRLKNLDLHNVSTRHGDGWQGW-QARAPFDAIIVTAAPPEI-------P------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp HHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEESSBCSSC-------C------THHHHTEEEEEEEEEEECS
T ss_pred HHHHHHHHcCCCceEEEECCcccCC-ccCCCccEEEEccchhhh-------h------HHHHHhcccCcEEEEEEcC
Confidence 99998763 257999999998863 356799999999888877 2 2578999999999998754
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=6.4e-16 Score=116.33 Aligned_cols=140 Identities=21% Similarity=0.130 Sum_probs=101.5
Q ss_pred CCCCCChhchhhhhc--ccCCceeeec--CccC-HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHH
Q 028547 7 TQAYGEPWYWDNRYA--HESGPFDWYQ--KYPS-LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSV 81 (207)
Q Consensus 7 ~~~~~~~~~w~~~~~--~~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~ 81 (207)
...|....+|...|. .....+.... .... +..++......++.+|||+|||+|.++..+++.+ .+++++|+++.
T Consensus 25 r~~f~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~ 103 (231)
T 1vbf_A 25 RSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEK 103 (231)
T ss_dssp HHHHSCGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHH
T ss_pred HHHcCCcchhhhccccCCCceeeCCCCccCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHH
Confidence 334556677777776 4322222111 1112 2334444433444599999999999999999987 49999999999
Q ss_pred HHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 82 VIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+++.++++.....++.++++|+.+.. ...++||+|++..+++++ . +++.++|+|||.+++......
T Consensus 104 ~~~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~-------~------~~~~~~L~pgG~l~~~~~~~~ 169 (231)
T 1vbf_A 104 MYNYASKLLSYYNNIKLILGDGTLGY-EEEKPYDRVVVWATAPTL-------L------CKPYEQLKEGGIMILPIGVGR 169 (231)
T ss_dssp HHHHHHHHHTTCSSEEEEESCGGGCC-GGGCCEEEEEESSBBSSC-------C------HHHHHTEEEEEEEEEEECSSS
T ss_pred HHHHHHHHHhhcCCeEEEECCccccc-ccCCCccEEEECCcHHHH-------H------HHHHHHcCCCcEEEEEEcCCC
Confidence 99999998875448999999998742 245789999999998876 1 468999999999999875444
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=119.00 Aligned_cols=135 Identities=18% Similarity=0.280 Sum_probs=101.8
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
..+|+..+..... .|......+...+.....+.. +|||+|||+|.++..+++.+. +++++|+++.+++.++++.
T Consensus 9 a~~yd~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~-- 82 (239)
T 3bxo_A 9 ADVYDLFYLGRGK--DYAAEASDIADLVRSRTPEAS-SLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL-- 82 (239)
T ss_dssp HHHHHHHHHHHTC--CHHHHHHHHHHHHHHHCTTCC-EEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC--
T ss_pred HHHHHHHhhccHh--hHHHHHHHHHHHHHHhcCCCC-eEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC--
Confidence 4566666543211 122222234555555554444 999999999999999999876 9999999999999999986
Q ss_pred CCCceEEEeccccccccCCCCeeEEEe-CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 93 RPQLKYIKMDVRQMDEFQTGSFDSVVD-KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 93 ~~~~~~~~~d~~~~~~~~~~~fD~v~~-~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+++.+.+.|+.+. +. .++||+|++ ..+++++ ....+...+++++.++|+|||.+++.++..
T Consensus 83 -~~~~~~~~d~~~~-~~-~~~~D~v~~~~~~~~~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 83 -PDATLHQGDMRDF-RL-GRKFSAVVSMFSSVGYL----KTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp -TTCEEEECCTTTC-CC-SSCEEEEEECTTGGGGC----CSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred -CCCEEEECCHHHc-cc-CCCCcEEEEcCchHhhc----CCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 4689999999987 34 678999995 5577776 233678899999999999999999976544
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.1e-17 Score=120.24 Aligned_cols=110 Identities=17% Similarity=0.239 Sum_probs=89.9
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc---cccCCCCee
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM---DEFQTGSFD 115 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~fD 115 (207)
++..+....+.+|||+|||+|.++..+++.+. +++++|+++.+++.++++ .++.+...|+.+. ......+||
T Consensus 44 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 44 ILLAILGRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA----GAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT----CSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh----cccccchhhHHhhcccccccCCCcc
Confidence 34444334445999999999999999999876 999999999999999988 4678888888876 222345699
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+|++..+++ . .+...+++++.++|+|||.+++.++...
T Consensus 119 ~v~~~~~l~-~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 156 (227)
T 3e8s_A 119 LICANFALL-H-------QDIIELLSAMRTLLVPGGALVIQTLHPW 156 (227)
T ss_dssp EEEEESCCC-S-------SCCHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred EEEECchhh-h-------hhHHHHHHHHHHHhCCCeEEEEEecCcc
Confidence 999998888 5 6778999999999999999999886443
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=129.44 Aligned_cols=104 Identities=21% Similarity=0.281 Sum_probs=90.1
Q ss_pred CCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHcc----------CCCCceEEEecccccc-----ccC
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS----------NRPQLKYIKMDVRQMD-----EFQ 110 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~----------~~~~~~~~~~d~~~~~-----~~~ 110 (207)
+.+|||+|||+|.++..+++.. ..+|+++|+++.+++.+++++. ...++.|+++|+.++. +++
T Consensus 84 ~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~ 163 (383)
T 4fsd_A 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVP 163 (383)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCC
T ss_pred CCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCC
Confidence 3499999999999999998862 2499999999999999998753 1158999999998862 567
Q ss_pred CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.++||+|+++.+++++ .+...++++++++|+|||.+++.+.
T Consensus 164 ~~~fD~V~~~~~l~~~-------~d~~~~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 164 DSSVDIVISNCVCNLS-------TNKLALFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp TTCEEEEEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEEEccchhcC-------CCHHHHHHHHHHHcCCCCEEEEEEe
Confidence 8899999999999998 7789999999999999999999764
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=124.48 Aligned_cols=115 Identities=12% Similarity=0.183 Sum_probs=91.3
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHH--hcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCC
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMV--DDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~--~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~ 113 (207)
.+...+.+.. +|||+|||+|.++..++ .....+|+++|+++.+++.+++++... .++.++++|+.+. +++ ++
T Consensus 111 ~l~~~l~~~~-~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~-~~ 187 (305)
T 3ocj_A 111 ALQRHLRPGC-VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL-DTR-EG 187 (305)
T ss_dssp HHHHHCCTTC-EEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC-CCC-SC
T ss_pred HHHhhCCCCC-EEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC-Ccc-CC
Confidence 3333344444 99999999999999985 222349999999999999999988643 3489999999998 556 89
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
||+|+++.+++++ .+......+++++.++|+|||.+++.++..
T Consensus 188 fD~v~~~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 188 YDLLTSNGLNIYE----PDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp EEEEECCSSGGGC----CCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred eEEEEECChhhhc----CCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 9999999999886 122344458999999999999999987544
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.68 E-value=6e-16 Score=117.10 Aligned_cols=115 Identities=22% Similarity=0.361 Sum_probs=93.7
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEeccccccccCCCCe
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~f 114 (207)
+...+...+++.. +|||+|||+|.++..+++. . +++++|+++.+++.++++... ..++.+.+.|+.+. +.+ ++|
T Consensus 23 ~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~-~~f 97 (243)
T 3d2l_A 23 WVAWVLEQVEPGK-RIADIGCGTGTATLLLADH-Y-EVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMREL-ELP-EPV 97 (243)
T ss_dssp HHHHHHHHSCTTC-EEEEESCTTCHHHHHHTTT-S-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGC-CCS-SCE
T ss_pred HHHHHHHHcCCCC-eEEEecCCCCHHHHHHhhC-C-eEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhc-CCC-CCc
Confidence 3445555555555 9999999999999999888 4 999999999999999988653 25789999999887 344 789
Q ss_pred eEEEeCc-chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 115 DSVVDKG-TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 115 D~v~~~~-~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
|+|++.. +++++ .+..+...+++++.++|+|||.+++....
T Consensus 98 D~v~~~~~~~~~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 98 DAITILCDSLNYL----QTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp EEEEECTTGGGGC----CSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CEEEEeCCchhhc----CCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 9999975 77775 23467889999999999999999986643
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=113.23 Aligned_cols=107 Identities=15% Similarity=0.182 Sum_probs=86.6
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
.+.+|||+|||+|.++..+++.+..+++++|+++.+++.+++++... .++.++++|+.+..+...++||+|+++.++
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~ 110 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 110 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC
Confidence 33499999999999999999886569999999999999999987643 368999999988533445679999998776
Q ss_pred hhhccCCCChhhHHHHHHHHH--HhcCCCcEEEEEEeCCc
Q 028547 124 DSLLCGSNSRQNATQMLKEVW--RVLKDKGVYILVTYGAP 161 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~~~~~~~~~~ 161 (207)
+. ......++.+. ++|+|||.+++......
T Consensus 111 ~~--------~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 111 AK--------ETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp HH--------HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred Cc--------chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 42 45567777776 99999999999875443
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=116.92 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=90.1
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~ 113 (207)
+...+.....+.. +|||+|||+|.++..+++.+..+++++|+++.+++.+++++... .++.+.+.|+.+. ..++
T Consensus 50 ~~~~l~~~~~~~~-~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---~~~~ 125 (205)
T 3grz_A 50 AMLGIERAMVKPL-TVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD---VDGK 125 (205)
T ss_dssp HHHHHHHHCSSCC-EEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT---CCSC
T ss_pred HHHHHHHhccCCC-EEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc---CCCC
Confidence 3444444444444 99999999999999999886669999999999999999987632 3599999999875 3578
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
||+|+++.+++++ ..+++++.++|+|||.+++..+..
T Consensus 126 fD~i~~~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~~~~ 162 (205)
T 3grz_A 126 FDLIVANILAEIL----------LDLIPQLDSHLNEDGQVIFSGIDY 162 (205)
T ss_dssp EEEEEEESCHHHH----------HHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred ceEEEECCcHHHH----------HHHHHHHHHhcCCCCEEEEEecCc
Confidence 9999998776654 788999999999999999976543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=120.01 Aligned_cols=99 Identities=11% Similarity=0.178 Sum_probs=81.9
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccC-CCCeeE
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ-TGSFDS 116 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~fD~ 116 (207)
.++.....+.. +|||+|||+|.++..+++.+. +|+++|+++.+++.++++. +++.++++|+.+..+++ .++||+
T Consensus 40 ~~~~~~~~~~~-~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~~~~~~~fD~ 114 (226)
T 3m33_A 40 LWLSRLLTPQT-RVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANA---PHADVYEWNGKGELPAGLGAPFGL 114 (226)
T ss_dssp HHHHHHCCTTC-EEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHC---TTSEEEECCSCSSCCTTCCCCEEE
T ss_pred HHHHhcCCCCC-eEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhC---CCceEEEcchhhccCCcCCCCEEE
Confidence 33444444444 999999999999999999866 9999999999999999983 57999999996554666 789999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
|+++. +...+++++.++|+|||.++
T Consensus 115 v~~~~-------------~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 115 IVSRR-------------GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp EEEES-------------CCSGGGGGHHHHEEEEEEEE
T ss_pred EEeCC-------------CHHHHHHHHHHHcCCCcEEE
Confidence 99862 34566889999999999998
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.67 E-value=7.7e-16 Score=114.73 Aligned_cols=110 Identities=21% Similarity=0.291 Sum_probs=84.3
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccc-cCCCCeeEEEeCcch
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDE-FQTGSFDSVVDKGTL 123 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~-~~~~~fD~v~~~~~l 123 (207)
..+|||+|||+|.++..+++... .+++|+|+++.+++.++++... ..++.++++|+.++.. ++.++||+|+++.+.
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~ 121 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 121 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCC
Confidence 34999999999999999998753 4999999999999999988652 2589999999998621 567889999987543
Q ss_pred hhhcc-CCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLC-GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~-~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+... +.........+++++.++|+|||.+++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 122 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 32200 00000124689999999999999999876
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=117.54 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=80.6
Q ss_pred cEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc--------CCCCceEEEeccccccc--cCCCCeeEEE
Q 028547 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--------NRPQLKYIKMDVRQMDE--FQTGSFDSVV 118 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~--------~~~~~~~~~~d~~~~~~--~~~~~fD~v~ 118 (207)
+|||||||+|.++..+++... ..++|+|+++.+++.+++++. ...|+.++++|+.+..+ ++.++||.|+
T Consensus 49 ~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v~ 128 (235)
T 3ckk_A 49 EFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMF 128 (235)
T ss_dssp EEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEEE
T ss_pred eEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEEE
Confidence 999999999999999998753 489999999999999987642 23689999999987324 5688999998
Q ss_pred eCcchhhhcc-CCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 119 DKGTLDSLLC-GSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~-~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+...-.+... +.........+++++.++|+|||.|++.+.
T Consensus 129 ~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 129 FLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred EeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 6533222100 000000125799999999999999999873
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-15 Score=116.88 Aligned_cols=107 Identities=18% Similarity=0.172 Sum_probs=89.0
Q ss_pred CcEEEEcCCC---chhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc----------ccCCCCe
Q 028547 49 QRILIVGCGN---SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----------EFQTGSF 114 (207)
Q Consensus 49 ~~vLdiG~G~---G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~~~f 114 (207)
.+|||||||+ |.++..+.+... .+|+++|+|+.+++.+++++....++.++++|+.+.. .++..+|
T Consensus 79 ~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~ 158 (274)
T 2qe6_A 79 SQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFSRP 158 (274)
T ss_dssp CEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTTSC
T ss_pred CEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCCCC
Confidence 4999999999 988776665432 4999999999999999998865568999999997641 1233589
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
|+|++..++|++ +..+...++++++++|+|||.|++.++..
T Consensus 159 d~v~~~~vlh~~-----~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 159 AAIMLVGMLHYL-----SPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp CEEEETTTGGGS-----CTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred EEEEEechhhhC-----CcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 999999999998 33358999999999999999999998765
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-16 Score=114.31 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=90.5
Q ss_pred hhCCCCCCcEEEEcCCCchhhHHHHhc-C-CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeE
Q 028547 42 LYVPSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
..+.+.. +|||+|||+|.++..+++. + ..+++++|+++.+++.+++++... .++.++++|+.+...+..++||+
T Consensus 18 ~~~~~~~-~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~ 96 (197)
T 3eey_A 18 MFVKEGD-TVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKA 96 (197)
T ss_dssp HHCCTTC-EEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEE
T ss_pred hcCCCCC-EEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceE
Confidence 3344444 9999999999999999887 2 249999999999999999987642 57999999998874456689999
Q ss_pred EEeCcchhhhc--cCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 117 VVDKGTLDSLL--CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 117 v~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
|+++.++.... .......+...+++++.++|+|||.+++..+..
T Consensus 97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 99886551100 001223466779999999999999999987643
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=118.17 Aligned_cols=112 Identities=17% Similarity=0.098 Sum_probs=84.5
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccc--cCCCCeeEEEeC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDE--FQTGSFDSVVDK 120 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~--~~~~~fD~v~~~ 120 (207)
..+ +|||||||+|.++..+++... ..|+|+|+++.+++.++++... ..|++++++|+.+..+ +++++||.|+++
T Consensus 34 ~~~-~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAP-VTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCC-EEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCC-eEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 444 999999999999999998764 4899999999999999988653 3689999999988523 578899999986
Q ss_pred cchhhhccC-CCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 121 GTLDSLLCG-SNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 121 ~~l~~~~~~-~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.+..+.... .........+++.++++|+|||.+++.+-
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 332221000 00000113599999999999999999873
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-16 Score=114.53 Aligned_cols=103 Identities=8% Similarity=0.040 Sum_probs=84.5
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++... .++.++++|+.+..+...++||+|+++.+++ .
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~-~ 134 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR-R 134 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS-T
T ss_pred CeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC-C
Confidence 499999999999999988877669999999999999999987633 4799999999885444567899999987744 2
Q ss_pred ccCCCChhhHHHHHHHHHH--hcCCCcEEEEEEeC
Q 028547 127 LCGSNSRQNATQMLKEVWR--VLKDKGVYILVTYG 159 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~--~L~pgG~~~~~~~~ 159 (207)
.....+++.+.+ +|+|||.+++....
T Consensus 135 -------~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 135 -------GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp -------TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred -------CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 456677777765 59999999987743
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=117.29 Aligned_cols=105 Identities=15% Similarity=0.107 Sum_probs=85.5
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----CCceEEEecccccccc-CCCC-eeEEEeCcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVRQMDEF-QTGS-FDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d~~~~~~~-~~~~-fD~v~~~~~ 122 (207)
.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++... .++.++++|+.+..+. ..++ ||+|+++.+
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 134 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPP 134 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCC
T ss_pred CeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECCC
Confidence 499999999999999888877669999999999999999987532 4789999999886322 3578 999999877
Q ss_pred hhhhccCCCChhhHHHHHHHH--HHhcCCCcEEEEEEeCCc
Q 028547 123 LDSLLCGSNSRQNATQMLKEV--WRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~--~~~L~pgG~~~~~~~~~~ 161 (207)
++ . .....+++.+ .++|+|||.+++......
T Consensus 135 ~~-~-------~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 135 FH-F-------NLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp SS-S-------CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred CC-C-------ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 54 2 5667788888 668999999998875443
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.2e-16 Score=115.88 Aligned_cols=106 Identities=18% Similarity=0.311 Sum_probs=89.5
Q ss_pred hhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc-cccCCCCeeEEEeC
Q 028547 42 LYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-DEFQTGSFDSVVDK 120 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~fD~v~~~ 120 (207)
..+..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++. ..+.+.|+.+. .++++++||+|++.
T Consensus 27 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~fD~v~~~ 100 (230)
T 3cc8_A 27 KHIKKEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL-----DHVVLGDIETMDMPYEEEQFDCVIFG 100 (230)
T ss_dssp TTCCTTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS-----SEEEESCTTTCCCCSCTTCEEEEEEE
T ss_pred HHhccCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC-----CcEEEcchhhcCCCCCCCccCEEEEC
Confidence 3333444599999999999999999886 59999999999999998764 37888998873 35667899999999
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
.+++++ .+...+++++.++|+|||.+++.+...
T Consensus 101 ~~l~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~ 133 (230)
T 3cc8_A 101 DVLEHL-------FDPWAVIEKVKPYIKQNGVILASIPNV 133 (230)
T ss_dssp SCGGGS-------SCHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred Chhhhc-------CCHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 999998 677899999999999999999987543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=120.25 Aligned_cols=110 Identities=20% Similarity=0.244 Sum_probs=90.1
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---------CCCceEEEecccccc---ccC--CCCe
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---------RPQLKYIKMDVRQMD---EFQ--TGSF 114 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---------~~~~~~~~~d~~~~~---~~~--~~~f 114 (207)
.+|||+|||+|.++..+++.+..+++++|+++.+++.++++... ..++.++++|+.+.. +++ .++|
T Consensus 36 ~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~f 115 (313)
T 3bgv_A 36 ITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCF 115 (313)
T ss_dssp CEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCCE
T ss_pred CEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCCE
Confidence 49999999999999999886556999999999999999987642 236899999998862 243 4589
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|+|++..+++++. .+..+...+++++.++|+|||.+++.++...
T Consensus 116 D~V~~~~~l~~~~---~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 159 (313)
T 3bgv_A 116 DICSCQFVCHYSF---ESYEQADMMLRNACERLSPGGYFIGTTPNSF 159 (313)
T ss_dssp EEEEEETCGGGGG---GSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred EEEEEecchhhcc---CCHHHHHHHHHHHHHHhCCCcEEEEecCChH
Confidence 9999999998741 1235678999999999999999999887553
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=7.3e-17 Score=125.84 Aligned_cols=105 Identities=13% Similarity=0.108 Sum_probs=80.4
Q ss_pred CcEEEEcCCCchhhHHH----HhcCC-Cc--EEEEeCCHHHHHHHHHHccCC---CCceE--EEecccccc-----ccCC
Q 028547 49 QRILIVGCGNSAFSEGM----VDDGY-ED--VVNVDISSVVIEAMMKKYSNR---PQLKY--IKMDVRQMD-----EFQT 111 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l----~~~~~-~~--v~~~D~s~~~i~~~~~~~~~~---~~~~~--~~~d~~~~~-----~~~~ 111 (207)
.+|||||||+|.++..+ +.... .. ++++|+|+.|++.++++.... .++.+ ...++.++. ++++
T Consensus 54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (292)
T 2aot_A 54 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKEL 133 (292)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCC
T ss_pred CeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCC
Confidence 49999999999765433 33222 23 399999999999999986532 35544 345554431 1457
Q ss_pred CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++||+|++..+++|+ .++..++++++++|||||.+++...+.
T Consensus 134 ~~fD~V~~~~~l~~~-------~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 134 QKWDFIHMIQMLYYV-------KDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp CCEEEEEEESCGGGC-------SCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred CceeEEEEeeeeeec-------CCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 899999999999999 899999999999999999999987554
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=113.78 Aligned_cols=101 Identities=14% Similarity=0.182 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc---cccCCCCeeEEEeCcc
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM---DEFQTGSFDSVVDKGT 122 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~fD~v~~~~~ 122 (207)
++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.+.+......++.++.+|+.+. .++. ++||+|+++.
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~- 134 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQDI- 134 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEECC-
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEec-
Confidence 33499999999999999998864 2489999999988766555443335788888888774 2333 7899999872
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+ ......++++++++|||||.+++..
T Consensus 135 ~~--------~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 135 AQ--------KNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CS--------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cC--------hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 11 1445566999999999999999985
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-15 Score=112.42 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=93.9
Q ss_pred eecCccCHHHHHHh----hCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEec
Q 028547 29 WYQKYPSLAPLIKL----YVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD 102 (207)
Q Consensus 29 ~~~~~~~~~~~l~~----~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d 102 (207)
|....+.+...+.. +..+++.+|||+|||+|.++..+++. |. ..|+++|+++++++.++++.....|+..+..|
T Consensus 55 w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d 134 (233)
T 4df3_A 55 WNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGD 134 (233)
T ss_dssp CCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESC
T ss_pred ECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEe
Confidence 55544456555543 22345559999999999999999986 44 48999999999999999998877899999998
Q ss_pred ccccc--ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 103 VRQMD--EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 103 ~~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..... +...+++|+|++... +. .+...++.++.+.|||||.++++.
T Consensus 135 ~~~p~~~~~~~~~vDvVf~d~~--~~-------~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 135 ARFPEKYRHLVEGVDGLYADVA--QP-------EQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp TTCGGGGTTTCCCEEEEEECCC--CT-------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCccccccccceEEEEEEecc--CC-------hhHHHHHHHHHHhccCCCEEEEEE
Confidence 87752 345678999987532 22 577889999999999999999865
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=113.55 Aligned_cols=103 Identities=22% Similarity=0.318 Sum_probs=88.5
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEE
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
..+....+ . .+|||+|||+|.++..+++. +++|+++.+++.++++ ++.+.+.|+.+. +++.++||+|
T Consensus 40 ~~l~~~~~-~-~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-----~~~~~~~d~~~~-~~~~~~fD~v 106 (219)
T 1vlm_A 40 QAVKCLLP-E-GRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-----GVFVLKGTAENL-PLKDESFDFA 106 (219)
T ss_dssp HHHHHHCC-S-SCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-----TCEEEECBTTBC-CSCTTCEEEE
T ss_pred HHHHHhCC-C-CcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-----CCEEEEcccccC-CCCCCCeeEE
Confidence 34555554 4 49999999999999888754 9999999999999887 688999999887 5677899999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++..+++++ .+...+++++.++|+|||.+++.+...
T Consensus 107 ~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 107 LMVTTICFV-------DDPERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp EEESCGGGS-------SCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred EEcchHhhc-------cCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 999999988 778999999999999999999987654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=123.03 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=90.7
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++... .++++++.|+.+.. ...++||+|+++.++++.
T Consensus 234 ~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~-~~~~~fD~Ii~npp~~~~ 311 (381)
T 3dmg_A 234 GRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEAL-TEEARFDIIVTNPPFHVG 311 (381)
T ss_dssp TCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTS-CTTCCEEEEEECCCCCTT
T ss_pred CCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcc-ccCCCeEEEEECCchhhc
Confidence 34999999999999999999876 9999999999999999987643 35899999999873 345899999999988862
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
..........+++++.++|+|||.++++...
T Consensus 312 --~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 312 --GAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp --CSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred --ccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 1112378889999999999999999998643
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-15 Score=111.16 Aligned_cols=141 Identities=12% Similarity=0.063 Sum_probs=100.6
Q ss_pred CCCCCChhchhhhhcccCCceeeec---CccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC-C-CcEEEEeCCHH
Q 028547 7 TQAYGEPWYWDNRYAHESGPFDWYQ---KYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-Y-EDVVNVDISSV 81 (207)
Q Consensus 7 ~~~~~~~~~w~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~-~~v~~~D~s~~ 81 (207)
...|....+|...|......+.... .......++......++.+|||+|||+|.++..+++.+ . .+|+++|+++.
T Consensus 34 r~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~ 113 (215)
T 2yxe_A 34 REEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPE 113 (215)
T ss_dssp GGGGSCGGGGGGTTSCSCEEEETTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHH
T ss_pred HHHcCCchhhhhcccCCCccCCCCcEeCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 3456667777777775433332111 11122334444433444599999999999999999875 2 59999999999
Q ss_pred HHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 82 VIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 82 ~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+++.+++++.. ..++.+...|+.... ...++||+|++..+++++ . +++.++|+|||.+++....
T Consensus 114 ~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~-------~------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 114 LAEKAERTLRKLGYDNVIVIVGDGTLGY-EPLAPYDRIYTTAAGPKI-------P------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp HHHHHHHHHHHHTCTTEEEEESCGGGCC-GGGCCEEEEEESSBBSSC-------C------HHHHHTEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHcCCCCeEEEECCcccCC-CCCCCeeEEEECCchHHH-------H------HHHHHHcCCCcEEEEEECC
Confidence 99999988652 256899999986542 235789999999998876 2 4789999999999998754
Q ss_pred Cc
Q 028547 160 AP 161 (207)
Q Consensus 160 ~~ 161 (207)
..
T Consensus 180 ~~ 181 (215)
T 2yxe_A 180 YL 181 (215)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-16 Score=129.48 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=84.1
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++........|...+...+ ++++++||+|++..+++|
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l-~~~~~~fD~I~~~~vl~h 183 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDV-RRTEGPANVIYAANTLCH 183 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHH-HHHHCCEEEEEEESCGGG
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhc-ccCCCCEEEEEECChHHh
Confidence 3345999999999999999999877 99999999999999988721111112223344444 456789999999999999
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+ .++..++++++++|+|||.+++.+.
T Consensus 184 ~-------~d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 184 I-------PYVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp C-------TTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-------CCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9 7999999999999999999999764
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.9e-16 Score=113.05 Aligned_cols=140 Identities=15% Similarity=0.148 Sum_probs=96.9
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhC-C-CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHc
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYV-P-SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY 90 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~ 90 (207)
..||...+...... ........+.+.+...+ . ..+.+|||+|||+|.++..+++.+..+|+++|+++.+++.+++++
T Consensus 9 g~~~~~~~~~~~~~-~~rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~ 87 (187)
T 2fhp_A 9 GEYGGRRLKALDGD-NTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENI 87 (187)
T ss_dssp STTTTCBCCCCCCC-SSCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH
T ss_pred ccccCccccCCCCC-CcCcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHH
Confidence 34555555544322 22222333443333332 2 233499999999999999988876569999999999999999887
Q ss_pred cCC---CCceEEEeccccccc---cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHH--HHhcCCCcEEEEEEeCCc
Q 028547 91 SNR---PQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEV--WRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 91 ~~~---~~~~~~~~d~~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~--~~~L~pgG~~~~~~~~~~ 161 (207)
... .++.++++|+.+..+ ...++||+|+++.+++. ......++.+ .++|+|||.+++......
T Consensus 88 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~--------~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 88 AITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAK--------QEIVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp HHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGG--------CCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred HHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCc--------hhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 532 368999999988522 12678999999877552 3455666666 888999999998875443
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=117.97 Aligned_cols=117 Identities=16% Similarity=0.176 Sum_probs=91.2
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHH------HHHHHHHHccCC---CCceEEEec-c-
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSV------VIEAMMKKYSNR---PQLKYIKMD-V- 103 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~------~i~~~~~~~~~~---~~~~~~~~d-~- 103 (207)
..++..+..+++.+|||+|||+|.++..+++. +. .+++++|+++. +++.+++++... .++.+.+.| .
T Consensus 33 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 112 (275)
T 3bkx_A 33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS 112 (275)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 34444443344459999999999999999987 43 59999999997 899999887643 478999998 3
Q ss_pred -ccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 104 -RQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 104 -~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
... +++.++||+|++..+++++ .+...+++.+.++++|||.+++.++..+
T Consensus 113 ~~~~-~~~~~~fD~v~~~~~l~~~-------~~~~~~~~~~~~l~~~gG~l~~~~~~~~ 163 (275)
T 3bkx_A 113 DDLG-PIADQHFDRVVLAHSLWYF-------ASANALALLFKNMAAVCDHVDVAEWSMQ 163 (275)
T ss_dssp TCCG-GGTTCCCSEEEEESCGGGS-------SCHHHHHHHHHHHTTTCSEEEEEEECSS
T ss_pred hccC-CCCCCCEEEEEEccchhhC-------CCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 333 5677899999999999988 5556677777778888999999886543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=116.16 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=86.6
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccc-cCCCCeeEEEeCcch
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDE-FQTGSFDSVVDKGTL 123 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~-~~~~~fD~v~~~~~l 123 (207)
+.+|||+|||+|.++..+++.+..+|+++|+++.+++.+++++... .++.++++|+.+... ++.++||+|+++.++
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy 129 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPY 129 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC
T ss_pred CCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCC
Confidence 4599999999999999999986569999999999999999987632 369999999998732 457899999998776
Q ss_pred hhhc-cCCC------------ChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 124 DSLL-CGSN------------SRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 124 ~~~~-~~~~------------~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.... .+.. .......+++.+.++|+|||.++++..
T Consensus 130 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 177 (259)
T 3lpm_A 130 FATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR 177 (259)
T ss_dssp -----------------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence 5430 0110 113567899999999999999999663
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-16 Score=114.11 Aligned_cols=104 Identities=13% Similarity=0.190 Sum_probs=80.7
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCC-CceEEEeccccccc-cC--CCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRP-QLKYIKMDVRQMDE-FQ--TGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~-~~~~~~~d~~~~~~-~~--~~~fD~v~~~~~l~ 124 (207)
.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++.... ++.+++.|+.+..+ .. .++||+|+++.+++
T Consensus 43 ~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~ 121 (171)
T 1ws6_A 43 GRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA 121 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred CeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc
Confidence 4999999999999999999877 59999999999999999875322 78999999987422 11 34899999987764
Q ss_pred hhccCCCChhhHHHHHHHHH--HhcCCCcEEEEEEeCCcc
Q 028547 125 SLLCGSNSRQNATQMLKEVW--RVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~--~~L~pgG~~~~~~~~~~~ 162 (207)
- .....++.+. ++|+|||.+++.+.....
T Consensus 122 -~--------~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 122 -M--------DLAALFGELLASGLVEAGGLYVLQHPKDLY 152 (171)
T ss_dssp -S--------CTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred -h--------hHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence 1 1233444455 999999999998865443
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=117.65 Aligned_cols=143 Identities=12% Similarity=0.140 Sum_probs=98.9
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHcc
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS 91 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~ 91 (207)
.+||...+......+......+.+.+.+...+..++.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++..
T Consensus 75 ~~f~~~~~~~~~~~~ipr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~ 154 (276)
T 2b3t_A 75 REFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ 154 (276)
T ss_dssp EEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH
T ss_pred eEECCceEEeCCCCcccCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 356666555444443333333333333333333333499999999999999998753 3499999999999999999875
Q ss_pred C--CCCceEEEeccccccccCCCCeeEEEeCcchhhhc---------cCC---------CChhhHHHHHHHHHHhcCCCc
Q 028547 92 N--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL---------CGS---------NSRQNATQMLKEVWRVLKDKG 151 (207)
Q Consensus 92 ~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~---------~~~---------~~~~~~~~~l~~~~~~L~pgG 151 (207)
. ..++.++++|+.+. .+.++||+|+++.++.... ... .+......+++.+.++|+|||
T Consensus 155 ~~~~~~v~~~~~d~~~~--~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG 232 (276)
T 2b3t_A 155 HLAIKNIHILQSDWFSA--LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGG 232 (276)
T ss_dssp HHTCCSEEEECCSTTGG--GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEE
T ss_pred HcCCCceEEEEcchhhh--cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCC
Confidence 2 24799999999875 3467899999986554220 000 011467889999999999999
Q ss_pred EEEEEE
Q 028547 152 VYILVT 157 (207)
Q Consensus 152 ~~~~~~ 157 (207)
.+++..
T Consensus 233 ~l~~~~ 238 (276)
T 2b3t_A 233 FLLLEH 238 (276)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 999865
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.9e-15 Score=119.52 Aligned_cols=115 Identities=18% Similarity=0.249 Sum_probs=93.3
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccc-ccCCC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMD-EFQTG 112 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~-~~~~~ 112 (207)
.++.........+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++++... .+++|..+|+.+.. +++ +
T Consensus 170 ~~l~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~ 247 (363)
T 3dp7_A 170 KALEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-T 247 (363)
T ss_dssp HHHHHHGGGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-C
T ss_pred HHHHHhcccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-C
Confidence 344443333445999999999999999998643 48999999 99999999987643 47999999999863 345 7
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+||+|++..++|++ +..+...+++++++.|+|||.+++....
T Consensus 248 ~~D~v~~~~vlh~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (363)
T 3dp7_A 248 GFDAVWMSQFLDCF-----SEEEVISILTRVAQSIGKDSKVYIMETL 289 (363)
T ss_dssp CCSEEEEESCSTTS-----CHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred CcCEEEEechhhhC-----CHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence 89999999999877 5566788999999999999999998753
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-15 Score=109.56 Aligned_cols=108 Identities=11% Similarity=0.130 Sum_probs=85.2
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CC-CceEEEeccccccccCCCCee
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RP-QLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~-~~~~~~~d~~~~~~~~~~~fD 115 (207)
++..+...++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++... .. ++.++++|+.+..+ ....||
T Consensus 47 ~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-~~~~~D 124 (204)
T 3njr_A 47 TLAALAPRRGELLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA-DLPLPE 124 (204)
T ss_dssp HHHHHCCCTTCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT-TSCCCS
T ss_pred HHHhcCCCCCCEEEEecCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc-cCCCCC
Confidence 33444344445999999999999999999854 999999999999999998653 24 79999999998422 335799
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+|++...+ +.. +++++.++|+|||.+++.....
T Consensus 125 ~v~~~~~~-----------~~~-~l~~~~~~LkpgG~lv~~~~~~ 157 (204)
T 3njr_A 125 AVFIGGGG-----------SQA-LYDRLWEWLAPGTRIVANAVTL 157 (204)
T ss_dssp EEEECSCC-----------CHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred EEEECCcc-----------cHH-HHHHHHHhcCCCcEEEEEecCc
Confidence 99976532 334 8999999999999999987543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=107.86 Aligned_cols=111 Identities=14% Similarity=0.201 Sum_probs=85.1
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC--C-CceEEEeccccccccCCCCe
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR--P-QLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~--~-~~~~~~~d~~~~~~~~~~~f 114 (207)
++..+...++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++... . ++ ++..|..+..+...++|
T Consensus 17 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~ 95 (178)
T 3hm2_A 17 AISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNP 95 (178)
T ss_dssp HHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCC
T ss_pred HHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCC
Confidence 3334433444599999999999999998874 249999999999999999987643 3 67 88888766433333789
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|+|++...+++ ..+++++.++|+|||.+++.+...+
T Consensus 96 D~i~~~~~~~~-----------~~~l~~~~~~L~~gG~l~~~~~~~~ 131 (178)
T 3hm2_A 96 DVIFIGGGLTA-----------PGVFAAAWKRLPVGGRLVANAVTVE 131 (178)
T ss_dssp SEEEECC-TTC-----------TTHHHHHHHTCCTTCEEEEEECSHH
T ss_pred CEEEECCcccH-----------HHHHHHHHHhcCCCCEEEEEeeccc
Confidence 99998877653 5689999999999999998875443
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=129.25 Aligned_cols=105 Identities=15% Similarity=0.244 Sum_probs=88.7
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHcc--------CCCCceEEEeccccccccCCCCeeE
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYS--------NRPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~--------~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
.+.+|||+|||+|.++..+++.+. .+|+|+|+++.+++.|++++. ...++.|+++|+.++ ++..++||+
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL-p~~d~sFDl 799 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF-DSRLHDVDI 799 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC-CTTSCSCCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC-CcccCCeeE
Confidence 445999999999999999999872 499999999999999988543 225799999999998 567889999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|++..+++|+ .......+++++.++|+|| .+++.+.
T Consensus 800 VV~~eVLeHL-----~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 800 GTCLEVIEHM-----EEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp EEEESCGGGS-----CHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred EEEeCchhhC-----ChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 9999999998 4445567999999999998 7777663
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=112.45 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=83.7
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEecccccc-ccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMD-EFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~-~~~~~~fD~v~~~~ 121 (207)
..+ +|||+|||+|.++..+++... .+++|+|+++.+++.++++... ..++.++++|+.++. .++.++||.|++..
T Consensus 38 ~~~-~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 38 DNP-IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CCC-EEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCc-eEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 344 999999999999999998743 4999999999999999988652 258999999998862 15678899998753
Q ss_pred chhhhcc-CCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLC-GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~-~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+..+... +.........+++++.++|+|||.+++.+
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 3221100 00000114788999999999999999987
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=116.67 Aligned_cols=102 Identities=15% Similarity=0.290 Sum_probs=82.5
Q ss_pred CcEEEEcCCCch----hhHHHHhc-C----CCcEEEEeCCHHHHHHHHHHcc------------------------CC--
Q 028547 49 QRILIVGCGNSA----FSEGMVDD-G----YEDVVNVDISSVVIEAMMKKYS------------------------NR-- 93 (207)
Q Consensus 49 ~~vLdiG~G~G~----~~~~l~~~-~----~~~v~~~D~s~~~i~~~~~~~~------------------------~~-- 93 (207)
.+|||+|||+|. ++..+++. + ..+|+|+|+|+.+++.|+++.. ..
T Consensus 107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 186 (274)
T 1af7_A 107 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLV 186 (274)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEE
T ss_pred cEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCce
Confidence 499999999998 55556554 2 1289999999999999998641 00
Q ss_pred -------CCceEEEeccccccccC-CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 94 -------PQLKYIKMDVRQMDEFQ-TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 94 -------~~~~~~~~d~~~~~~~~-~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.++.|.+.|+.+. +++ .++||+|+|.+++.++ .......+++++++.|+|||.+++-
T Consensus 187 ~v~~~lr~~V~F~~~dl~~~-~~~~~~~fDlI~crnvliyf-----~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 187 RVRQELANYVEFSSVNLLEK-QYNVPGPFDAIFCRNVMIYF-----DKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EECHHHHTTEEEEECCTTCS-SCCCCCCEEEEEECSSGGGS-----CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eechhhcccCeEEecccCCC-CCCcCCCeeEEEECCchHhC-----CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2689999999885 444 5789999999999988 5566799999999999999999873
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=120.04 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=83.8
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
++.+|||+|||+|.++..+++.+..+|+++|+++ +++.+++++... .++.++++|+.+. +++.++||+|++..+.
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~~~ 141 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV-HLPVEKVDVIISEWMG 141 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSCSCEEEEEECCCB
T ss_pred CCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh-cCCCCcEEEEEEcCch
Confidence 3449999999999999999998766999999997 899998876532 5799999999987 5677899999987632
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
..+ ........+++++.++|+|||.++
T Consensus 142 ~~l----~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 142 YFL----LFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TTB----TTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhc----cCHHHHHHHHHHHHhhcCCCcEEE
Confidence 222 123677889999999999999987
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-15 Score=108.72 Aligned_cols=107 Identities=17% Similarity=0.209 Sum_probs=86.4
Q ss_pred HhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCC-CCeeE
Q 028547 41 KLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQT-GSFDS 116 (207)
Q Consensus 41 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~-~~fD~ 116 (207)
......++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++... .++.+.+.|+.+. ++. ++||+
T Consensus 27 ~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~ 103 (192)
T 1l3i_A 27 CLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA--LCKIPDIDI 103 (192)
T ss_dssp HHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH--HTTSCCEEE
T ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh--cccCCCCCE
Confidence 33333444599999999999999999987 59999999999999999876532 4789999998873 232 58999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
|++..++++ ...+++++.++|+|||.+++..+..
T Consensus 104 v~~~~~~~~----------~~~~l~~~~~~l~~gG~l~~~~~~~ 137 (192)
T 1l3i_A 104 AVVGGSGGE----------LQEILRIIKDKLKPGGRIIVTAILL 137 (192)
T ss_dssp EEESCCTTC----------HHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred EEECCchHH----------HHHHHHHHHHhcCCCcEEEEEecCc
Confidence 999876654 3789999999999999999987543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=121.66 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=89.3
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHcc---------C--CCCceEEEecc
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS---------N--RPQLKYIKMDV 103 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~---------~--~~~~~~~~~d~ 103 (207)
+..++......++.+|||||||+|.++..++.. +..+++|+|+++.+++.|+++.. . ..++.|+++|+
T Consensus 162 i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 455666554455559999999999999999865 44469999999999988876431 1 25799999999
Q ss_pred ccccccCC--CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 104 RQMDEFQT--GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 104 ~~~~~~~~--~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.+. ++.. ..||+|+++.++.. .+....|.++++.|||||.|++...
T Consensus 242 ~~l-p~~d~~~~aDVVf~Nn~~F~--------pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 242 LSE-EWRERIANTSVIFVNNFAFG--------PEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp TSH-HHHHHHHTCSEEEECCTTCC--------HHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred cCC-ccccccCCccEEEEcccccC--------chHHHHHHHHHHcCCCCcEEEEeec
Confidence 987 4433 47999999876542 6788888999999999999998754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-15 Score=120.40 Aligned_cols=118 Identities=17% Similarity=0.214 Sum_probs=89.2
Q ss_pred HHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-----CCceEEEeccccccccCCCC
Q 028547 40 IKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 40 l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~ 113 (207)
+..+....+.+|||+|||+|.++..+++.+. .+|+++|+++.+++.+++++... .++.|...|+.+. ++.++
T Consensus 215 l~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~--~~~~~ 292 (375)
T 4dcm_A 215 MQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--VEPFR 292 (375)
T ss_dssp HHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT--CCTTC
T ss_pred HHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc--CCCCC
Confidence 3333333335999999999999999999863 59999999999999999987632 2578899999885 46789
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
||+|+++.++++... ........+++++.++|+|||.++++.....
T Consensus 293 fD~Ii~nppfh~~~~--~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~ 338 (375)
T 4dcm_A 293 FNAVLCNPPFHQQHA--LTDNVAWEMFHHARRCLKINGELYIVANRHL 338 (375)
T ss_dssp EEEEEECCCC---------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred eeEEEECCCcccCcc--cCHHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence 999999998875310 0123445789999999999999999875444
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=109.98 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=85.3
Q ss_pred hhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEe
Q 028547 42 LYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVD 119 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~ 119 (207)
.+++... +|||+|||+|.++..++...+ .+|+++|+++.+++.+++++... ....+...|.... .+.++||+|++
T Consensus 45 ~~l~~~~-~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~--~~~~~~DvVLa 121 (200)
T 3fzg_A 45 GNIKHVS-SILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD--VYKGTYDVVFL 121 (200)
T ss_dssp HHSCCCS-EEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH--HTTSEEEEEEE
T ss_pred hhcCCCC-eEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc--CCCCCcChhhH
Confidence 3455555 999999999999999977743 49999999999999999998642 2223444666554 36788999999
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..++|++ ++.+..+.++++.|+|||+|+-..
T Consensus 122 ~k~LHlL-------~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 122 LKMLPVL-------KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp ETCHHHH-------HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred hhHHHhh-------hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 9999999 888888889999999999987644
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-15 Score=110.98 Aligned_cols=140 Identities=16% Similarity=0.104 Sum_probs=98.2
Q ss_pred CCCCCChhchhhhhcccCCceeeec--Ccc-CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHH
Q 028547 7 TQAYGEPWYWDNRYAHESGPFDWYQ--KYP-SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVI 83 (207)
Q Consensus 7 ~~~~~~~~~w~~~~~~~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i 83 (207)
...|....+|...|......+.... ... ....++..+...++.+|||+|||+|.++..+++.+..+|+++|+++.++
T Consensus 48 r~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~ 127 (235)
T 1jg1_A 48 RYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELV 127 (235)
T ss_dssp GGGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHH
T ss_pred HhhhCCchhhhcCccCCCcccCCCceeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHH
Confidence 4456666777777765433322111 111 2333444443344459999999999999999987525999999999999
Q ss_pred HHHHHHccC--CCCceEEEeccccccccCC-CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 84 EAMMKKYSN--RPQLKYIKMDVRQMDEFQT-GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 84 ~~~~~~~~~--~~~~~~~~~d~~~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+.+++++.. ..++.+..+|+... ++. .+||+|++..+++++ .+++.+.|+|||.+++.....
T Consensus 128 ~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~Ii~~~~~~~~-------------~~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 128 EFAKRNLERAGVKNVHVILGDGSKG--FPPKAPYDVIIVTAGAPKI-------------PEPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESCGGGC--CGGGCCEEEEEECSBBSSC-------------CHHHHHTEEEEEEEEEEECSS
T ss_pred HHHHHHHHHcCCCCcEEEECCcccC--CCCCCCccEEEECCcHHHH-------------HHHHHHhcCCCcEEEEEEecC
Confidence 999998753 24689999998432 333 459999999888776 236889999999999987544
Q ss_pred c
Q 028547 161 P 161 (207)
Q Consensus 161 ~ 161 (207)
.
T Consensus 193 ~ 193 (235)
T 1jg1_A 193 H 193 (235)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-14 Score=110.64 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=80.7
Q ss_pred CCCCcEEEEcCCCchhhH-HHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 46 SHHQRILIVGCGNSAFSE-GMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~-~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
+++.+|||+|||+|.++. .+++....+|+++|+++++++.|++++.. ..+++|+++|+.++ ++++||+|++...
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l---~d~~FDvV~~~a~ 197 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVI---DGLEFDVLMVAAL 197 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGG---GGCCCSEEEECTT
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhC---CCCCcCEEEECCC
Confidence 344599999999987664 44553224999999999999999998652 26899999999886 3689999997543
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
. .+...+++++.++|||||.+++...
T Consensus 198 ---~-------~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 198 ---A-------EPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp ---C-------SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ---c-------cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 2 5778999999999999999998773
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=116.99 Aligned_cols=111 Identities=9% Similarity=0.078 Sum_probs=88.7
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--C-CCceEEEeccccccccCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~-~~~~~~~~d~~~~~~~~~~ 112 (207)
....+.....+.. +|||+|||+|.++..+++.+..+|+++|+++.+++.+++++.. . .++.++++|+.+.. ..+
T Consensus 115 ~~~~l~~~~~~~~-~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~--~~~ 191 (278)
T 2frn_A 115 ERVRMAKVAKPDE-LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP--GEN 191 (278)
T ss_dssp HHHHHHHHCCTTC-EEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--CCS
T ss_pred HHHHHHHhCCCCC-EEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhc--ccC
Confidence 3444444544444 9999999999999999998765799999999999999998762 2 24889999999984 277
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+||+|+++.+.. ...+++.+.++|+|||.+++.+++.
T Consensus 192 ~fD~Vi~~~p~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 192 IADRILMGYVVR-----------THEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp CEEEEEECCCSS-----------GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred CccEEEECCchh-----------HHHHHHHHHHHCCCCeEEEEEEeec
Confidence 899999865422 2567888999999999999988764
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-15 Score=120.91 Aligned_cols=101 Identities=18% Similarity=0.192 Sum_probs=84.2
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
++|||+|||+|.++..+++.+..+|+|+|+++ +++.++++.... .++.++++|+.+. +++.++||+|++..+.+.
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iis~~~~~~ 145 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEWMGYC 145 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECCCBBT
T ss_pred CEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHc-cCCCCceEEEEEcccccc
Confidence 49999999999999999999767999999995 999998876532 3499999999998 577889999999765443
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
+ ........+++.+.++|+|||.++.
T Consensus 146 l----~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 146 L----FYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp B----TBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred c----cCchhHHHHHHHHHHhCCCCCEEcc
Confidence 3 1236788899999999999999864
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-15 Score=120.01 Aligned_cols=111 Identities=19% Similarity=0.277 Sum_probs=88.4
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
.....+|||+|||+|.++..+++.+. .+++++|+++.+++.+++++... ...++...|+.+. ..++||+|+++.+
T Consensus 194 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Iv~~~~ 270 (343)
T 2pjd_A 194 PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE---VKGRFDMIISNPP 270 (343)
T ss_dssp TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT---CCSCEEEEEECCC
T ss_pred cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc---ccCCeeEEEECCC
Confidence 33345999999999999999999875 39999999999999999987632 3467888888765 3678999999988
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+++... ........+++++.++|+|||.++++....
T Consensus 271 ~~~g~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 271 FHDGMQ--TSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp CCSSSH--HHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred cccCcc--CCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 874100 012577899999999999999999987543
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-15 Score=113.55 Aligned_cols=109 Identities=14% Similarity=0.181 Sum_probs=87.7
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCee
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD 115 (207)
.+.+.....+.. +|||+|||+|.++..+++.+. +|+++|+++.+++.++++.... ..+.+.+.|+.+. ++.++||
T Consensus 111 ~~~l~~~~~~~~-~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~--~~~~~fD 186 (254)
T 2nxc_A 111 LKALARHLRPGD-KVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA--LPFGPFD 186 (254)
T ss_dssp HHHHHHHCCTTC-EEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH--GGGCCEE
T ss_pred HHHHHHhcCCCC-EEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc--CcCCCCC
Confidence 344544544444 999999999999999999887 9999999999999999987632 2288999988874 3467899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+|+++...+. ...+++.+.++|+|||.+++....
T Consensus 187 ~Vv~n~~~~~----------~~~~l~~~~~~LkpgG~lils~~~ 220 (254)
T 2nxc_A 187 LLVANLYAEL----------HAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp EEEEECCHHH----------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEECCcHHH----------HHHHHHHHHHHcCCCCEEEEEeec
Confidence 9998765443 478899999999999999997643
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-15 Score=119.64 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=85.2
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
++++|||+|||+|.++..+++.+..+|+++|++ .+++.+++++... .++.++++|+.+. +++ ++||+|++..+.
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~-~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDI-SLP-EKVDVIISEWMG 139 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGC-CCS-SCEEEEEECCCB
T ss_pred CCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhc-CcC-CcceEEEEcChh
Confidence 345999999999999999999987799999999 8999998886532 3589999999987 344 899999996544
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+.+ ..+.....+++.+.++|+|||.+++..
T Consensus 140 ~~l----~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 140 YFL----LRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp TTB----TTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hcc----cchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 443 123567889999999999999998743
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-15 Score=111.40 Aligned_cols=101 Identities=14% Similarity=0.226 Sum_probs=81.4
Q ss_pred CCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc---cccCCCCeeEEEeCcc
Q 028547 47 HHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM---DEFQTGSFDSVVDKGT 122 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~fD~v~~~~~ 122 (207)
++.+|||+|||+|.++..+++. +..+|+++|+++.+++.++++.....++.++.+|+.+. .++. ++||+|+..
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~-- 150 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYED-- 150 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEEC--
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEEe--
Confidence 3349999999999999999987 33599999999999999999877657899999999872 1344 789999932
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+ ........+++++.++|+|||.+++..
T Consensus 151 ---~----~~~~~~~~~l~~~~~~LkpgG~l~i~~ 178 (230)
T 1fbn_A 151 ---V----AQPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp ---C----CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---c----CChhHHHHHHHHHHHhCCCCcEEEEEE
Confidence 1 112345778999999999999999973
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-17 Score=123.95 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=81.8
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++... .++.++++|+.+.. +.++||+|+++.+++
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA--SFLKADVVFLSPPWG 155 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG--GGCCCSEEEECCCCS
T ss_pred CCEEEECccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc--ccCCCCEEEECCCcC
Confidence 34999999999999999999874 9999999999999999987632 37999999999873 567999999999888
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
+. .+....+.++.++|+|||.+++.
T Consensus 156 ~~-------~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 156 GP-------DYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SG-------GGGGSSSBCTTTSCSSCHHHHHH
T ss_pred Cc-------chhhhHHHHHHhhcCCcceeHHH
Confidence 76 44444566777888888876553
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=104.05 Aligned_cols=105 Identities=15% Similarity=0.184 Sum_probs=83.8
Q ss_pred HHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEE
Q 028547 40 IKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 40 l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
+..+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++... .++.+++.|+.+. ++.++||+|
T Consensus 28 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~i 104 (183)
T 2yxd_A 28 IGKLNLNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV--LDKLEFNKA 104 (183)
T ss_dssp HHHHCCCTTCEEEEESCCCSHHHHHHHTT-SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH--GGGCCCSEE
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc--ccCCCCcEE
Confidence 33333334459999999999999999984 459999999999999999987532 5789999999883 456789999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++..+ .+...+++++.++ |||.+++.+...
T Consensus 105 ~~~~~-----------~~~~~~l~~~~~~--~gG~l~~~~~~~ 134 (183)
T 2yxd_A 105 FIGGT-----------KNIEKIIEILDKK--KINHIVANTIVL 134 (183)
T ss_dssp EECSC-----------SCHHHHHHHHHHT--TCCEEEEEESCH
T ss_pred EECCc-----------ccHHHHHHHHhhC--CCCEEEEEeccc
Confidence 98866 2457888888888 999999987543
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-15 Score=107.02 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=78.7
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~ 128 (207)
.+|||+|||+|.++..+++.+ +++|+|+++.+++. ..++.++++|+.+. ++.++||+|+++.++++...
T Consensus 25 ~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~-------~~~~~~~~~d~~~~--~~~~~fD~i~~n~~~~~~~~ 93 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES-------HRGGNLVRADLLCS--INQESVDVVVFNPPYVPDTD 93 (170)
T ss_dssp CEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT-------CSSSCEEECSTTTT--BCGGGCSEEEECCCCBTTCC
T ss_pred CeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc-------ccCCeEEECChhhh--cccCCCCEEEECCCCccCCc
Confidence 499999999999999999987 99999999999887 25789999999884 45589999999988875410
Q ss_pred C--CCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 129 G--SNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 129 ~--~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
. ..+..+...+++++.+.+ |||.+++....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 94 DPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp CTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred cccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence 0 001123456788888888 99999997754
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-14 Score=110.56 Aligned_cols=106 Identities=24% Similarity=0.385 Sum_probs=84.7
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeE
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
..+...++.++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++. .++.+...|+.+. ++++++||+
T Consensus 76 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~-~~~~~~fD~ 151 (269)
T 1p91_A 76 AQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRL-PFSDTSMDA 151 (269)
T ss_dssp HHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTSC-SBCTTCEEE
T ss_pred HHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcchhhC-CCCCCceeE
Confidence 33344343344599999999999999999873 249999999999999999876 4689999999887 577789999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|++..+. ..++++.++|+|||.+++.+....
T Consensus 152 v~~~~~~--------------~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 152 IIRIYAP--------------CKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp EEEESCC--------------CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEeCCh--------------hhHHHHHHhcCCCcEEEEEEcCHH
Confidence 9985432 247889999999999999886554
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.8e-15 Score=117.16 Aligned_cols=106 Identities=12% Similarity=0.221 Sum_probs=88.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
..+|||+|||+|.++..+++... .+++++|+ +.+++.++++.... .++++..+|+.+..++..+.||+|++..++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl 258 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL 258 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence 45999999999999999998754 48999999 78999998876532 469999999998733345679999999999
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
|++ +..+...+++++++.|+|||.+++.+..
T Consensus 259 h~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (352)
T 3mcz_A 259 HYF-----DAREAREVIGHAAGLVKPGGALLILTMT 289 (352)
T ss_dssp GGS-----CHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccC-----CHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 987 4556799999999999999999998753
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.3e-15 Score=112.08 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=82.7
Q ss_pred CCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccc-cCCCCeeEEEeCcc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDE-FQTGSFDSVVDKGT 122 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~-~~~~~fD~v~~~~~ 122 (207)
+.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++... .++.++++|+.+..+ ...++||+|++...
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~ 151 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAA 151 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETT
T ss_pred CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCc
Confidence 3499999999999999999853 259999999999999999987632 379999999988644 34689999997643
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. .....+++.+.++|+|||.+++..
T Consensus 152 ~----------~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 152 K----------AQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp S----------SSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred H----------HHHHHHHHHHHHhcCCCeEEEEee
Confidence 2 456789999999999999998854
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-14 Score=114.90 Aligned_cols=107 Identities=11% Similarity=0.110 Sum_probs=88.6
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
....+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++++.. ..+++|..+|+.+ +++. .||+|++..
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~--~~p~-~~D~v~~~~ 276 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE--TIPD-GADVYLIKH 276 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT--CCCS-SCSEEEEES
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC--CCCC-CceEEEhhh
Confidence 3345999999999999999998754 48999999 9999999987652 2579999999984 3454 899999999
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+++++ +......+++++++.|+|||.+++.+...+
T Consensus 277 vlh~~-----~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 311 (369)
T 3gwz_A 277 VLHDW-----DDDDVVRILRRIATAMKPDSRLLVIDNLID 311 (369)
T ss_dssp CGGGS-----CHHHHHHHHHHHHTTCCTTCEEEEEEEBCC
T ss_pred hhccC-----CHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 99987 444556899999999999999999875433
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.3e-15 Score=112.61 Aligned_cols=98 Identities=15% Similarity=0.102 Sum_probs=80.8
Q ss_pred CCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccC---CCCeeEEEeCc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQ---TGSFDSVVDKG 121 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~---~~~fD~v~~~~ 121 (207)
+.+|||+|||+|..+..++... ..+|+++|+++.+++.++++... ..++.++++|+.++ ++. .++||+|++..
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~fD~V~~~~ 149 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETF-GQRKDVRESYDIVTARA 149 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHH-TTCTTTTTCEEEEEEEC
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHh-cccccccCCccEEEEec
Confidence 3499999999999999998642 24999999999999999987652 24799999999886 332 57899999865
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+ .+...+++.+.++|+|||.+++..
T Consensus 150 ~-----------~~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 150 V-----------ARLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp C-----------SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred c-----------CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 2 456899999999999999998865
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.1e-16 Score=113.81 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCC-----CCeeEEE
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQT-----GSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~-----~~fD~v~ 118 (207)
.++.+|||+|||+|.++..+++.+. .+++++|+++.+++.+++++... .+++++++|+.+. ++. ++||+|+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~fD~i~ 106 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEW--LIERAERGRPWHAIV 106 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHH--HHHHHHTTCCBSEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhh--hhhhhhccCcccEEE
Confidence 3345999999999999999999854 39999999999999999887643 2688888998874 344 8999999
Q ss_pred eCcchhhhcc-------------------CCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 119 DKGTLDSLLC-------------------GSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~-------------------~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++.+++.... +..+......+++++.++|+|||.+++...
T Consensus 107 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 107 SNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp ECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred ECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 9876643210 001112237888999999999999554443
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.58 E-value=8.8e-15 Score=111.53 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=84.2
Q ss_pred CCcEEEEcCCCchhhHHHHhc--C-CCcEEEEeCCHHHHHHHHHHccCCC------C-----------------------
Q 028547 48 HQRILIVGCGNSAFSEGMVDD--G-YEDVVNVDISSVVIEAMMKKYSNRP------Q----------------------- 95 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~--~-~~~v~~~D~s~~~i~~~~~~~~~~~------~----------------------- 95 (207)
+.+|||+|||+|.++..+++. . ..+|+|+|+++.+++.++++..... +
T Consensus 52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (250)
T 1o9g_A 52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA 131 (250)
T ss_dssp CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhh
Confidence 349999999999999999876 2 2489999999999999998765420 1
Q ss_pred --ce-------------EEEecccccccc----CCCCeeEEEeCcchhhhccC--CCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 96 --LK-------------YIKMDVRQMDEF----QTGSFDSVVDKGTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 96 --~~-------------~~~~d~~~~~~~----~~~~fD~v~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
+. |.+.|+.+..+. ...+||+|+++.++...... .........+++++.++|+|||.++
T Consensus 132 ~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 211 (250)
T 1o9g_A 132 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIA 211 (250)
T ss_dssp HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred hhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEE
Confidence 56 999998875321 34589999998777654110 1124677899999999999999999
Q ss_pred EEE
Q 028547 155 LVT 157 (207)
Q Consensus 155 ~~~ 157 (207)
++.
T Consensus 212 ~~~ 214 (250)
T 1o9g_A 212 VTD 214 (250)
T ss_dssp EEE
T ss_pred EeC
Confidence 854
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=115.25 Aligned_cols=104 Identities=12% Similarity=0.133 Sum_probs=87.5
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++++.. ..+++|...|+.+ +.+. +||+|++..++|
T Consensus 171 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~p~-~~D~v~~~~vlh 246 (332)
T 3i53_A 171 GHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD--PLPA-GAGGYVLSAVLH 246 (332)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS--CCCC-SCSEEEEESCGG
T ss_pred CEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC--CCCC-CCcEEEEehhhc
Confidence 4999999999999999988654 48999999 9999999987652 2579999999984 3444 899999999999
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
++ +.+....+++++++.|+|||.+++.+...+
T Consensus 247 ~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 278 (332)
T 3i53_A 247 DW-----DDLSAVAILRRCAEAAGSGGVVLVIEAVAG 278 (332)
T ss_dssp GS-----CHHHHHHHHHHHHHHHTTTCEEEEEECCCC
T ss_pred cC-----CHHHHHHHHHHHHHhcCCCCEEEEEeecCC
Confidence 88 445579999999999999999999875433
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=114.51 Aligned_cols=108 Identities=14% Similarity=0.232 Sum_probs=89.2
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
.+..+|||+|||+|.++..+++... .+++++|++ .+++.+++++.. ..+++|..+|+.+. +++. .||+|++..
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~-~~D~v~~~~ 240 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV-DYGN-DYDLVLLPN 240 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS-CCCS-CEEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC-CCCC-CCcEEEEcc
Confidence 3445999999999999999998742 399999999 999999987642 13699999999886 4443 499999999
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+++++ +..+...++++++++|+|||.+++.+...+
T Consensus 241 ~l~~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 275 (335)
T 2r3s_A 241 FLHHF-----DVATCEQLLRKIKTALAVEGKVIVFDFIPN 275 (335)
T ss_dssp CGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred hhccC-----CHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence 99987 556778999999999999999999875443
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.57 E-value=9.9e-15 Score=116.51 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=83.7
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--C-CCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
.++.+|||+|||+|.++..+++.+..+|+++|+++ +++.+++++.. . .++.++.+|+.+. +.+ ++||+|++..+
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~~~-~~~D~Ivs~~~ 125 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV-SLP-EQVDIIISEPM 125 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC-CCS-SCEEEEEECCC
T ss_pred CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhC-CCC-CceeEEEEeCc
Confidence 34459999999999999999998767999999996 77888877652 2 5799999999987 333 68999999987
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
++++ ..+.....+.++.++|+|||.+++.
T Consensus 126 ~~~~-----~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 126 GYML-----FNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp BTTB-----TTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred hhcC-----ChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 7765 2345667788899999999999854
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-14 Score=109.94 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=83.5
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeC-CHHHHHHHHHHc-----cCC-------CCceEEEeccccc-ccc---
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDI-SSVVIEAMMKKY-----SNR-------PQLKYIKMDVRQM-DEF--- 109 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~-s~~~i~~~~~~~-----~~~-------~~~~~~~~d~~~~-~~~--- 109 (207)
.+.+|||+|||+|.++..+++.+..+|+++|+ ++.+++.++++. ... .++.+...+..+. ...
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 158 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC 158 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence 33499999999999999999987669999999 899999999987 322 2677887665542 111
Q ss_pred -CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcC---C--CcEEEEEE
Q 028547 110 -QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLK---D--KGVYILVT 157 (207)
Q Consensus 110 -~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~---p--gG~~~~~~ 157 (207)
..++||+|++..++++. .+...+++.+.++|+ | ||.++++.
T Consensus 159 ~~~~~fD~Ii~~dvl~~~-------~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 159 TGLQRFQVVLLADLLSFH-------QAHDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp HSCSSBSEEEEESCCSCG-------GGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred ccCCCCCEEEEeCcccCh-------HHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 35789999998888876 789999999999999 9 99887754
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=8.8e-15 Score=109.53 Aligned_cols=105 Identities=10% Similarity=0.023 Sum_probs=83.3
Q ss_pred CCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCC-----CCeeEE
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQT-----GSFDSV 117 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~-----~~fD~v 117 (207)
+.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++... .+++++++|+.+..+... ++||+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V 138 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 138 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence 3499999999999999999852 249999999999999999986532 369999999877433222 689999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++....++. .....+++.+ ++|+|||.+++.....
T Consensus 139 ~~d~~~~~~-------~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 139 FLDHWKDRY-------LPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp EECSCGGGH-------HHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEcCCcccc-------hHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 998777665 5556677777 9999999999876443
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-14 Score=109.21 Aligned_cols=98 Identities=8% Similarity=0.174 Sum_probs=80.7
Q ss_pred cEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC----CCceEEEeccccccc-cCCCCeeEEEeCcc
Q 028547 50 RILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVRQMDE-FQTGSFDSVVDKGT 122 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d~~~~~~-~~~~~fD~v~~~~~ 122 (207)
+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++... .+++++++|+.+..+ +..++||+|++...
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~ 138 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVS 138 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCC
T ss_pred CEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCc
Confidence 89999999999999998852 249999999999999999987632 369999999988633 33689999998643
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. .....+++.+.++|+|||++++..
T Consensus 139 ~----------~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 139 P----------MDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp T----------TTHHHHHHHHHHHEEEEEEEEETT
T ss_pred H----------HHHHHHHHHHHHHcCCCcEEEEeC
Confidence 2 345678999999999999999854
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.56 E-value=8.8e-15 Score=115.91 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=83.3
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+.+|||+|||+|.++..+++.+..+|+++|++ .+++.+++++... .++.++.+|+.+. +++.++||+|++..+.+
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSSSCEEEEEECCCBT
T ss_pred CCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhc-cCCCCcccEEEEeCchh
Confidence 34999999999999999999876799999999 5889888876532 4689999999987 46668999999975544
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
.+ ........++..+.++|+|||.++.
T Consensus 117 ~l----~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 117 FL----LYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TB----STTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hc----ccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 33 1235678899999999999999973
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=109.65 Aligned_cols=101 Identities=13% Similarity=0.043 Sum_probs=82.1
Q ss_pred CCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccC--CCCeeEEEeC
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQ--TGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~--~~~fD~v~~~ 120 (207)
+.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++... .++.++++|+.+..+.. .++||+|++.
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d 143 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFID 143 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence 3499999999999999999872 249999999999999999987532 47999999998743322 3489999986
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
... .....+++++.++|+|||++++...
T Consensus 144 ~~~----------~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 144 ADK----------PNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp SCG----------GGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred Cch----------HHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 532 4567899999999999999998764
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=107.54 Aligned_cols=103 Identities=13% Similarity=0.170 Sum_probs=80.8
Q ss_pred CCCcEEEEcCCCchhhHHHHhc-C-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc--ccCCCCeeEEEeCcc
Q 028547 47 HHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD--EFQTGSFDSVVDKGT 122 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~fD~v~~~~~ 122 (207)
++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.+.++.....++.++++|+.+.. +...++||+|++..+
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~ 156 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA 156 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC
Confidence 3349999999999999999987 2 24999999999877776665544368999999998842 345678999998644
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
. ......++.++.++|+|||.+++...
T Consensus 157 --~-------~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 157 --Q-------PDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp --C-------TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --C-------ccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 1 14556678899999999999999653
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.6e-14 Score=113.03 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=91.6
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~ 113 (207)
.++..+...+..+|||+|||+|.++..+++... .+++++|+ +.+++.+++++... .+++++.+|+.+. +++.
T Consensus 181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~-- 256 (359)
T 1x19_A 181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-SYPE-- 256 (359)
T ss_dssp HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS-CCCC--
T ss_pred HHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC-CCCC--
Confidence 344444333445999999999999999998753 48999999 99999999886522 3599999999987 4443
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+|+|++..+++++ +.+....++++++++|+|||.+++.++..+
T Consensus 257 ~D~v~~~~vlh~~-----~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 299 (359)
T 1x19_A 257 ADAVLFCRILYSA-----NEQLSTIMCKKAFDAMRSGGRLLILDMVID 299 (359)
T ss_dssp CSEEEEESCGGGS-----CHHHHHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred CCEEEEechhccC-----CHHHHHHHHHHHHHhcCCCCEEEEEecccC
Confidence 3999999999987 445589999999999999999998885443
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=109.40 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=80.3
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc----------CCCCceEEEeccccccc--cCCCCee
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS----------NRPQLKYIKMDVRQMDE--FQTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~----------~~~~~~~~~~d~~~~~~--~~~~~fD 115 (207)
.+|||+|||+|.++..+++.+. .+|+|+|+++.+++.+++++. ...++.++++|+.+..+ +..+.+|
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~d 130 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLS 130 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCEE
T ss_pred CEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccccC
Confidence 3999999999999999999865 489999999999999987653 22589999999987433 5678899
Q ss_pred EEEeCcchhhhcc-CCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLC-GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~-~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|+....-.+... ..........+++++.++|+|||.+++.+
T Consensus 131 ~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 131 KMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp EEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 9985421111000 00000011589999999999999999975
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=109.72 Aligned_cols=110 Identities=13% Similarity=0.123 Sum_probs=85.1
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC---C---CCceEEEecccccc------ccCCCCee
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN---R---PQLKYIKMDVRQMD------EFQTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~---~---~~~~~~~~d~~~~~------~~~~~~fD 115 (207)
.+|||+|||+|.++..+++... .+++++|+++.+++.+++++.. . .++.+++.|+.+.. .++.++||
T Consensus 38 ~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~fD 117 (260)
T 2ozv_A 38 CRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFH 117 (260)
T ss_dssp EEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCEE
T ss_pred CEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCcC
Confidence 4999999999999999998863 4999999999999999999765 3 25899999998872 24578999
Q ss_pred EEEeCcchhhhc-----------cCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 116 SVVDKGTLDSLL-----------CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 116 ~v~~~~~l~~~~-----------~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+|+++.++.... ...........+++.+.++|+|||.++++..
T Consensus 118 ~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 118 HVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp EEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 999997765421 0000112467899999999999999998763
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=109.77 Aligned_cols=99 Identities=10% Similarity=0.044 Sum_probs=81.7
Q ss_pred CCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccc--cCCCCeeEEEeCcc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDE--FQTGSFDSVVDKGT 122 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~--~~~~~fD~v~~~~~ 122 (207)
+.+|||+|||+|..+..++... ..+|+++|+++.+++.++++... ..++.++++|+.+... ...++||+|++..+
T Consensus 81 ~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~ 160 (249)
T 3g89_A 81 PLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAV 160 (249)
T ss_dssp SCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEESS
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECCc
Confidence 3499999999999999998863 24999999999999999998763 3579999999988732 12478999998643
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+...+++.+.++|+|||.+++..
T Consensus 161 -----------~~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 161 -----------APLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp -----------CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -----------CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 345789999999999999998866
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=113.89 Aligned_cols=108 Identities=17% Similarity=0.114 Sum_probs=86.2
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~ 112 (207)
..++.....+++.+|||+|||+|.++..+++.+. .+|+++|+++.+++.+++++.. ..++.+..+|+.+.. ...+
T Consensus 65 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~-~~~~ 143 (317)
T 1dl5_A 65 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV-PEFS 143 (317)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGC
T ss_pred HHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcc-ccCC
Confidence 3444444344445999999999999999998754 2599999999999999998753 256999999998853 2457
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+||+|++..+++++ . +.+.+.|+|||.+++...
T Consensus 144 ~fD~Iv~~~~~~~~-------~------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 144 PYDVIFVTVGVDEV-------P------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CEEEEEECSBBSCC-------C------HHHHHHEEEEEEEEEEBC
T ss_pred CeEEEEEcCCHHHH-------H------HHHHHhcCCCcEEEEEEC
Confidence 89999999999887 1 578899999999998753
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=114.22 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=89.9
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~ 112 (207)
..++..+..++..+|||+|||+|.++..+++... .+++++|+ +.+++.+++++... .+++|..+|+.+. ++.
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~- 247 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP--LPV- 247 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC--CSC-
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc--CCC-
Confidence 3444443333345999999999999999998753 48999999 99999999886532 3799999999863 333
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.||+|++..+++++ +......++++++++|+|||.+++.+.
T Consensus 248 ~~D~v~~~~vl~~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 248 TADVVLLSFVLLNW-----SDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp CEEEEEEESCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCEEEEeccccCC-----CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 49999999999987 334456999999999999999998776
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-14 Score=107.02 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=82.2
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCC------CcEEEEeCCHHHHHHHHHHccC-------CCCceEEEeccccccc---cC
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGY------EDVVNVDISSVVIEAMMKKYSN-------RPQLKYIKMDVRQMDE---FQ 110 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~------~~v~~~D~s~~~i~~~~~~~~~-------~~~~~~~~~d~~~~~~---~~ 110 (207)
++.+|||+|||+|.++..+++... .+|+++|+++.+++.+++++.. ..++.+...|+.+..+ ..
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 334999999999999999988642 4999999999999999988652 2479999999987520 34
Q ss_pred CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
.++||+|++...++++ ++.+.+.|+|||.+++.....
T Consensus 160 ~~~fD~I~~~~~~~~~-------------~~~~~~~LkpgG~lv~~~~~~ 196 (227)
T 2pbf_A 160 LGLFDAIHVGASASEL-------------PEILVDLLAENGKLIIPIEED 196 (227)
T ss_dssp HCCEEEEEECSBBSSC-------------CHHHHHHEEEEEEEEEEEEET
T ss_pred CCCcCEEEECCchHHH-------------HHHHHHhcCCCcEEEEEEccC
Confidence 5789999998887765 478899999999999987543
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.9e-14 Score=104.63 Aligned_cols=102 Identities=15% Similarity=0.230 Sum_probs=81.6
Q ss_pred CCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc--cCCCCeeEEEeCcc
Q 028547 47 HHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGT 122 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~v~~~~~ 122 (207)
++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.++++.....++.++++|+.+... ...++||+|++..+
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~ 152 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA 152 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC
Confidence 3349999999999999999976 32 59999999999999998888765789999999987421 12468999997644
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. ......+++++.++|+|||.+++..
T Consensus 153 --~-------~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 153 --Q-------PTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp --S-------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --C-------HhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 1344556999999999999999874
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=107.30 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=81.9
Q ss_pred CCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccC-------CCCceEEEeccccccccCCCCeeE
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSN-------RPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
+++.+|||+|||+|..+..+++. +. .+|+++|+++.+++.++++... ..++.+.+.|+... ....++||+
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~ 154 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG-YAEEAPYDA 154 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC-CGGGCCEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC-cccCCCcCE
Confidence 33459999999999999999886 33 4999999999999999987653 24789999999865 234678999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
|++..+++++ ++++.++|+|||.+++....
T Consensus 155 i~~~~~~~~~-------------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVV-------------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSC-------------CHHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHH-------------HHHHHHhcCCCcEEEEEEec
Confidence 9998877665 46889999999999998754
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=103.99 Aligned_cols=113 Identities=11% Similarity=0.129 Sum_probs=83.8
Q ss_pred HHHHHhhC-CCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc-----
Q 028547 37 APLIKLYV-PSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----- 108 (207)
Q Consensus 37 ~~~l~~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~----- 108 (207)
.+++..+. .+++.+|||+|||+|.++..+++. +. .+++++|+++ ++.. .++.+.+.|+.+. +
T Consensus 11 ~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------~~~~~~~~d~~~~-~~~~~~ 80 (180)
T 1ej0_A 11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------VGVDFLQGDFRDE-LVMKAL 80 (180)
T ss_dssp HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------TTEEEEESCTTSH-HHHHHH
T ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------CcEEEEEcccccc-hhhhhh
Confidence 34455443 233349999999999999999887 43 5999999998 5432 4789999999886 3
Q ss_pred ---cCCCCeeEEEeCcchhhhccCCCChhh------HHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 109 ---FQTGSFDSVVDKGTLDSLLCGSNSRQN------ATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 109 ---~~~~~fD~v~~~~~l~~~~~~~~~~~~------~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
++.++||+|+++.++++.. ....+. ...+++++.++|+|||.+++..+...
T Consensus 81 ~~~~~~~~~D~i~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (180)
T 1ej0_A 81 LERVGDSKVQVVMSDMAPNMSG--TPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp HHHHTTCCEEEEEECCCCCCCS--CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred hccCCCCceeEEEECCCccccC--CCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 5678999999988876540 000011 26899999999999999999886554
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=122.56 Aligned_cols=114 Identities=13% Similarity=0.202 Sum_probs=88.7
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEecccccc-ccCCCCeeEEEeCc
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMD-EFQTGSFDSVVDKG 121 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~-~~~~~~fD~v~~~~ 121 (207)
.++. +|||||||.|.++..|++.|. +|+|+|+++.+|+.|+...... .++.|.+.++.++. .+..++||+|++..
T Consensus 65 ~~~~-~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPL-NVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCC-EEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCC-eEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 3444 999999999999999999988 9999999999999999877543 47899999998862 34567999999999
Q ss_pred chhhhccCCCChhhHH--HHHHHHHHhcCCCcEEEEEEeCCccccccc
Q 028547 122 TLDSLLCGSNSRQNAT--QMLKEVWRVLKDKGVYILVTYGAPIYRLGM 167 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~--~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~ 167 (207)
+++|+ .+.. ..+..+.+.|+++|..++...........+
T Consensus 143 ~~ehv-------~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~~~~~ 183 (569)
T 4azs_A 143 VFHHI-------VHLHGIDEVKRLLSRLADVTQAVILELAVKEEPFYW 183 (569)
T ss_dssp CHHHH-------HHHHCHHHHHHHHHHHHHHSSEEEEECCCTTSSSGG
T ss_pred chhcC-------CCHHHHHHHHHHHHHhccccceeeEEeccccccccc
Confidence 99998 4443 223456667788777777665444444433
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-14 Score=113.27 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=88.2
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC-C-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG-Y-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~-~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
+++.+|||+|||+|.++..++..+ . .+++|+|+++.+++.+++++... .++.|.+.|+.++ +.+...||+|+++.
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~-~~~~~~~D~Ii~np 280 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHL-PRFFPEVDRILANP 280 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGG-GGTCCCCSEEEECC
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhC-ccccCCCCEEEECC
Confidence 344599999999999999999865 2 49999999999999999987633 3799999999998 45567799999988
Q ss_pred chhhhccC-CCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 122 TLDSLLCG-SNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 122 ~l~~~~~~-~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
++...... .........+++.+.++|+|||.+++.+..
T Consensus 281 Pyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 281 PHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred CCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 76532100 001123478899999999999999998743
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-14 Score=104.91 Aligned_cols=97 Identities=11% Similarity=0.141 Sum_probs=81.2
Q ss_pred CcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+|||+|||+|.++..++... ..+++++|+++.+++.++++.... .++.+.+.|+.+.. +.++||+|+++..
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~i~~~~~--- 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP--SEPPFDGVISRAF--- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC--CCSCEEEEECSCS---
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC--ccCCcCEEEEecc---
Confidence 499999999999999998863 249999999999999999886532 46899999998873 4578999997642
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....+++.+.++|+|||.+++...
T Consensus 142 --------~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 142 --------ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp --------SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred --------CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3457899999999999999998763
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-14 Score=108.04 Aligned_cols=117 Identities=14% Similarity=0.082 Sum_probs=79.2
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCC-HHHHHHH---HHHccC--CCCceEEEeccccccccC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDIS-SVVIEAM---MKKYSN--RPQLKYIKMDVRQMDEFQ 110 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s-~~~i~~~---~~~~~~--~~~~~~~~~d~~~~~~~~ 110 (207)
+++.....+.. +|||||||+|.++..+++... .+|+|+|+| +.+++.| +++... ..++.|.++|+.++....
T Consensus 16 ~~~~~~~~~~~-~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~ 94 (225)
T 3p2e_A 16 ELTEIIGQFDR-VHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFEL 94 (225)
T ss_dssp HHHHHHTTCSE-EEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGG
T ss_pred HHHHHhCCCCC-EEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhc
Confidence 34444444444 999999999999999986533 489999999 6666665 665442 257999999998872112
Q ss_pred CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+.+|.|+++.+......+ ...+...++++++++|||||.+++.+
T Consensus 95 ~d~v~~i~~~~~~~~~~~~--~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 95 KNIADSISILFPWGTLLEY--VIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp TTCEEEEEEESCCHHHHHH--HHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred cCeEEEEEEeCCCcHHhhh--hhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 3667777765432221000 00123568999999999999999844
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=108.57 Aligned_cols=111 Identities=16% Similarity=0.200 Sum_probs=80.6
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHH----cc--CCCCceEEEeccccccccC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKK----YS--NRPQLKYIKMDVRQMDEFQ 110 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~----~~--~~~~~~~~~~d~~~~~~~~ 110 (207)
..+..+..+++.+|||+|||+|.++..+++... .+|+|+|+++.+++.+.++ .. ..+++.++++|+.++ ++.
T Consensus 18 ~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l-~~~ 96 (218)
T 3mq2_A 18 AEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL-PPL 96 (218)
T ss_dssp HHHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC-CSC
T ss_pred HHHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC-CCC
Confidence 344444344445999999999999999999852 4999999999988864322 21 225899999999997 566
Q ss_pred CCCeeEEEeCcc---h--hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 111 TGSFDSVVDKGT---L--DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 111 ~~~fD~v~~~~~---l--~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+. |.|+.... . +++ .+...++++++++|||||.+++..
T Consensus 97 ~~~-d~v~~~~~~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 97 SGV-GELHVLMPWGSLLRGVL-------GSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp CCE-EEEEEESCCHHHHHHHH-------TSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred CCC-CEEEEEccchhhhhhhh-------ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 555 76663221 1 133 344889999999999999999854
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-14 Score=112.15 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=85.2
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CC--CceEEEecccccccc---CCCCeeEEEeCc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RP--QLKYIKMDVRQMDEF---QTGSFDSVVDKG 121 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~--~~~~~~~d~~~~~~~---~~~~fD~v~~~~ 121 (207)
.+|||+|||+|.++..+++.+. +|+++|+|+.+++.+++++.. .. ++.+++.|+.+..+. ..++||+|+++.
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 4999999999999999999887 999999999999999998752 22 489999999886321 156899999976
Q ss_pred chhhhccCC---CChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 122 TLDSLLCGS---NSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 122 ~l~~~~~~~---~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+........ ....+...+++.+.++|+|||.+++.....
T Consensus 234 P~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~ 275 (332)
T 2igt_A 234 PKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 275 (332)
T ss_dssp CSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence 532210000 012567889999999999999977766443
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-14 Score=111.20 Aligned_cols=110 Identities=22% Similarity=0.278 Sum_probs=83.0
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHcc------CCCCceEEEecccccccc-CCCCeeEE
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDEF-QTGSFDSV 117 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~------~~~~~~~~~~d~~~~~~~-~~~~fD~v 117 (207)
+.+.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++. ..++++++.+|+.+.... ..++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 344599999999999999999874 3599999999999999999873 236899999999886321 46789999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++....... .........+++++.++|+|||++++...
T Consensus 174 i~d~~~~~~---~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 174 IIDTTDPAG---PASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp EEECC------------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECCCCccc---cchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 986544321 00001126889999999999999998753
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.4e-14 Score=104.44 Aligned_cols=121 Identities=14% Similarity=0.127 Sum_probs=94.6
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~ 112 (207)
.+.+..+.++.. +|+|+|||+|.++..+++.+. .+|+++|+++.+++.|++++... .++.+..+|+.+.. .+.+
T Consensus 12 L~~i~~~v~~g~-~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~-~~~~ 89 (230)
T 3lec_A 12 LQKVANYVPKGA-RLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF-EEAD 89 (230)
T ss_dssp HHHHHTTSCTTE-EEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC-CGGG
T ss_pred HHHHHHhCCCCC-EEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-cccc
Confidence 344556666665 999999999999999999875 58999999999999999987632 36999999999873 2334
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccc
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML 168 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~ 168 (207)
.||+|+..++.. .....+++...+.|+++|.|++...........++
T Consensus 90 ~~D~IviaGmGg---------~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L 136 (230)
T 3lec_A 90 NIDTITICGMGG---------RLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWL 136 (230)
T ss_dssp CCCEEEEEEECH---------HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHH
T ss_pred ccCEEEEeCCch---------HHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHH
Confidence 799988655433 45788899999999999999988765544444444
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=118.16 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=82.9
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
++.+|||+|||+|.++..+++.+..+|+++|+++ +++.+++++... .+++++.+|+.+. +++ ++||+|+++.++
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~-~~~-~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV-SLP-EQVDIIISEPMG 234 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC-CCS-SCEEEEECCCCH
T ss_pred CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC-ccC-CCeEEEEEeCch
Confidence 3459999999999999999987666999999998 888888876532 5799999999986 333 689999998877
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
+++ ..+.....+.++.++|+|||.+++
T Consensus 235 ~~~-----~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 235 YML-----FNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHH-----TCHHHHHHHHHGGGGEEEEEEEES
T ss_pred Hhc-----CcHHHHHHHHHHHHhcCCCCEEEE
Confidence 765 334566777888999999999985
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=103.90 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCchhhHHHHhc-C-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc--CCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--QTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~fD~v~~~~ 121 (207)
+++.+|||+|||+|.++..+++. + ...|+++|+++.+++.+.+......|+.++++|+.....+ ..++||+|++..
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~ 154 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDI 154 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecC
Confidence 34459999999999999999875 3 2499999999988655443333236899999999875321 246899999874
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
... .....+...+.+.|||||.|+++.
T Consensus 155 a~~---------~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 155 AQP---------DQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp CCT---------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCh---------hHHHHHHHHHHHhCCCCeEEEEEE
Confidence 431 333444556667999999999874
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.7e-14 Score=114.36 Aligned_cols=113 Identities=8% Similarity=0.028 Sum_probs=84.6
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHH-------HHHccC----CCCceEEEeccc
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAM-------MKKYSN----RPQLKYIKMDVR 104 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~-------~~~~~~----~~~~~~~~~d~~ 104 (207)
..++..+...++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.| ++++.. ..++.++++|..
T Consensus 232 ~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~ 311 (433)
T 1u2z_A 232 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 311 (433)
T ss_dssp HHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence 44555443444459999999999999999986 445899999999998888 666542 257888887544
Q ss_pred c-cccc--CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 105 Q-MDEF--QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 105 ~-~~~~--~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. ..++ ..++||+|+++..+. . .+....++++.++|+|||.+++..
T Consensus 312 ~~~~~~~~~~~~FDvIvvn~~l~-~-------~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 312 VDNNRVAELIPQCDVILVNNFLF-D-------EDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp TTCHHHHHHGGGCSEEEECCTTC-C-------HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccccccccCCCCEEEEeCccc-c-------ccHHHHHHHHHHhCCCCeEEEEee
Confidence 2 1111 246899999876553 2 577788999999999999999874
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-14 Score=113.14 Aligned_cols=112 Identities=22% Similarity=0.211 Sum_probs=85.7
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccC-------CCCceEEEeccccccccCCCCeeEE
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN-------RPQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
+.+++|||+|||+|.++..+++.. ..+++++|+++.+++.+++++.. .++++++.+|+.+..+...++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 344599999999999999999873 35999999999999999998642 3689999999988533456789999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
++....+....+.........+++.+.++|+|||++++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 9875443200011011124789999999999999999875
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-14 Score=110.92 Aligned_cols=101 Identities=14% Similarity=0.195 Sum_probs=83.1
Q ss_pred CCCCcEEEEcCCCchhhHHHHhc-C-CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.+++++... .++.+.++|+.+. ++.++||+|++.
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~~~~fD~Vi~~ 186 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF--ISDQMYDAVIAD 186 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC--CCSCCEEEEEEC
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc--CcCCCccEEEEc
Confidence 34459999999999999999986 2 249999999999999999987643 5799999999884 466789999973
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+ .+...+++++.++|+|||.+++.+...
T Consensus 187 -----~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 187 -----I-------PDPWNHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp -----C-------SCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred -----C-------cCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 2 234678999999999999999988543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-14 Score=111.91 Aligned_cols=111 Identities=18% Similarity=0.311 Sum_probs=83.3
Q ss_pred CCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccccCCCCeeEEEe
Q 028547 47 HHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDSVVD 119 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~v~~ 119 (207)
.+.+|||+|||+|.++..+++. +..+++++|+++.+++.+++++.. .++++++++|+.+..+...++||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 3459999999999999999987 346999999999999999998742 368999999998753345678999998
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
...-.++ +.........+++.+.++|+|||++++...+
T Consensus 170 d~~~~~~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 170 DSTDPTA--GQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EC------------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred cCCCccc--CchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 5432212 0001113478899999999999999997643
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-14 Score=107.47 Aligned_cols=100 Identities=8% Similarity=0.063 Sum_probs=81.1
Q ss_pred CcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccccc-CC----CCeeEEE
Q 028547 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEF-QT----GSFDSVV 118 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~-~~----~~fD~v~ 118 (207)
.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++... .++.++++|+.+..+. .. ++||+|+
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~ 145 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIY 145 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEE
Confidence 499999999999999999862 249999999999999999987532 3599999999775221 11 7899999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+.... .....+++.+.++|+|||.+++...
T Consensus 146 ~~~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 146 IDADK----------ANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp ECSCG----------GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred ECCCH----------HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 76432 4568899999999999999998664
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-14 Score=111.25 Aligned_cols=102 Identities=12% Similarity=0.164 Sum_probs=86.3
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.+|||+|||+|.++..+++... .+++++|+ +.+++.+++++.. ..++++..+|+.+. ++ ++||+|++..++|
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~-~~~D~v~~~~vl~ 244 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE--VP-SNGDIYLLSRIIG 244 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC--CC-SSCSEEEEESCGG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC--CC-CCCCEEEEchhcc
Confidence 5999999999999999998743 48999999 9999999887652 24799999999873 34 6799999999999
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
++ +......+++++++.|+|||.+++.+..
T Consensus 245 ~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 245 DL-----DEAASLRLLGNCREAMAGDGRVVVIERT 274 (334)
T ss_dssp GC-----CHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred CC-----CHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 87 4455669999999999999999998753
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.5e-14 Score=113.60 Aligned_cols=123 Identities=14% Similarity=0.094 Sum_probs=89.0
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCee
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD 115 (207)
...+..+..+. .+|||+|||+|.++..++..+. .|+++|+|+.+++.+++++... ...++.++|+.+..+...+.||
T Consensus 205 r~~l~~~~~~g-~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD 282 (393)
T 4dmg_A 205 RRLFEAMVRPG-ERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFH 282 (393)
T ss_dssp HHHHHTTCCTT-CEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEE
T ss_pred HHHHHHHhcCC-CeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCC
Confidence 44455444334 4999999999999999999887 5999999999999999987522 2346778999886322234499
Q ss_pred EEEeCcchhhhccC--CCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 116 SVVDKGTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 116 ~v~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+|+++.+...-... .........+++.+.++|+|||.+++.+++..
T Consensus 283 ~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 283 HVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp EEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred EEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 99987654210000 00014667889999999999999998887655
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-14 Score=111.31 Aligned_cols=110 Identities=17% Similarity=0.311 Sum_probs=84.6
Q ss_pred CCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccccCCCCeeEEEe
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDSVVD 119 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~v~~ 119 (207)
.+++|||+|||+|.++..+++.. ..+++++|+++.+++.+++++.. .++++++++|+.+..+...++||+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 34599999999999999999873 35999999999999999998764 367999999998753334678999998
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+.. +.+ +.........+++++.+.|+|||.+++...+
T Consensus 196 d~~-~p~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 196 DSS-DPI--GPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp ECC-CSS--SGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCc-CCC--CcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 642 111 0000011278999999999999999997643
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-14 Score=110.74 Aligned_cols=141 Identities=13% Similarity=0.120 Sum_probs=93.4
Q ss_pred hchhhhhcccCCceeeecCccCHHHHHHhhCC-CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC
Q 028547 14 WYWDNRYAHESGPFDWYQKYPSLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 14 ~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
+||...+......+......+.+.+.+...+. ..+.+|||+|||+|.++..+++....+|+++|+|+.+++.++++...
T Consensus 89 ~f~~~~~~v~~~~lipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~ 168 (284)
T 1nv8_A 89 EFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAER 168 (284)
T ss_dssp EETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHH
T ss_pred EECCeEEEeCCCceecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 45555554444444332333333333322222 23349999999999999999988224999999999999999998763
Q ss_pred C--C-CceEEEeccccccccCCCCe---eEEEeCcchhhhcc----CC--C------ChhhHHHHHHHHH-HhcCCCcEE
Q 028547 93 R--P-QLKYIKMDVRQMDEFQTGSF---DSVVDKGTLDSLLC----GS--N------SRQNATQMLKEVW-RVLKDKGVY 153 (207)
Q Consensus 93 ~--~-~~~~~~~d~~~~~~~~~~~f---D~v~~~~~l~~~~~----~~--~------~~~~~~~~l~~~~-~~L~pgG~~ 153 (207)
. . ++.|+++|+.+.. + ++| |+|+++.++..... .. . +..+...+++++. +.|+|||.+
T Consensus 169 ~~l~~~v~~~~~D~~~~~--~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l 245 (284)
T 1nv8_A 169 HGVSDRFFVRKGEFLEPF--K-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIV 245 (284)
T ss_dssp TTCTTSEEEEESSTTGGG--G-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEE
T ss_pred cCCCCceEEEECcchhhc--c-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEE
Confidence 2 2 4999999998853 2 478 99999866543210 00 0 0012237899999 999999999
Q ss_pred EEEE
Q 028547 154 ILVT 157 (207)
Q Consensus 154 ~~~~ 157 (207)
++..
T Consensus 246 ~~e~ 249 (284)
T 1nv8_A 246 LMEI 249 (284)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9855
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8e-14 Score=111.63 Aligned_cols=112 Identities=12% Similarity=0.175 Sum_probs=89.3
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCe
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~f 114 (207)
++..+...+..+|||+|||+|.++..+++... .+++++|+ +.+++.+++++... .++.++.+|+.+. ++. .|
T Consensus 175 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~ 250 (360)
T 1tw3_A 175 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP--LPR-KA 250 (360)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC--CSS-CE
T ss_pred HHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC--CCC-Cc
Confidence 34443333445999999999999999998754 48999999 89999999876532 3799999999864 333 49
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
|+|++..+++++ +..+...+++++.++|+|||.+++.+..
T Consensus 251 D~v~~~~vl~~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 251 DAIILSFVLLNW-----PDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEEEESCGGGS-----CHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cEEEEcccccCC-----CHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 999999999987 4445578999999999999999998765
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-13 Score=100.15 Aligned_cols=89 Identities=18% Similarity=0.347 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+.+|||+|||+|.++..+++.+..+++++|+++.+++.++++.. ++.++++|+.++ + ++||+|+++.+++++
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~d~~~~-~---~~~D~v~~~~p~~~~ 123 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG---GVNFMVADVSEI-S---GKYDTWIMNPPFGSV 123 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT---TSEEEECCGGGC-C---CCEEEEEECCCC---
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC---CCEEEECcHHHC-C---CCeeEEEECCCchhc
Confidence 334999999999999999998866579999999999999999875 789999999886 2 689999999999886
Q ss_pred ccCCCChhhHHHHHHHHHHhc
Q 028547 127 LCGSNSRQNATQMLKEVWRVL 147 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L 147 (207)
.......+++++.+.+
T Consensus 124 -----~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 124 -----VKHSDRAFIDKAFETS 139 (200)
T ss_dssp ---------CHHHHHHHHHHE
T ss_pred -----cCchhHHHHHHHHHhc
Confidence 1122356788888888
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-14 Score=109.22 Aligned_cols=109 Identities=16% Similarity=0.257 Sum_probs=85.3
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccccCCCCeeEE
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
.+.+++|||+|||+|.++..+++.. ..+++++|+++.+++.+++++.. .++++++++|+.+..+...++||+|
T Consensus 76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 3344599999999999999999874 35999999999999999998763 3689999999988533346789999
Q ss_pred EeCcchhhhccCCCChhh--HHHHHHHHHHhcCCCcEEEEEEe
Q 028547 118 VDKGTLDSLLCGSNSRQN--ATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++....... .... ...+++.+.+.|+|||++++...
T Consensus 156 i~d~~~~~~-----~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 156 IVDSSDPIG-----PAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EEECCCTTT-----GGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCCCCCC-----cchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 985432211 1122 27899999999999999998753
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-14 Score=111.47 Aligned_cols=110 Identities=18% Similarity=0.206 Sum_probs=83.1
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccccCCCCeeEEE
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
..+++|||+|||+|.++..+++.. ..+++++|+++.+++.+++++.. .++++++.+|+.+..+...++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 344599999999999999999874 35999999999999999998752 36899999999875334567899999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+....+.. .........+++++.++|+|||++++...
T Consensus 174 ~d~~~~~~---~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 174 TDSSDPMG---PAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp EECC--------------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCCCC---cchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 86443211 00112346789999999999999998763
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.7e-14 Score=105.55 Aligned_cols=101 Identities=12% Similarity=0.016 Sum_probs=80.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccc-cC---CCCeeEEE
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDE-FQ---TGSFDSVV 118 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~-~~---~~~fD~v~ 118 (207)
+.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++... .++.++++|+.+..+ +. .++||+|+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~ 138 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF 138 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence 3499999999999999999873 249999999999999999887522 359999999987522 11 26799999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+.... .....+++.+.++|+|||.+++...
T Consensus 139 ~d~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 139 IDADK----------QNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp ECSCG----------GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EcCCc----------HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 87543 4557899999999999998888653
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-14 Score=110.41 Aligned_cols=108 Identities=17% Similarity=0.265 Sum_probs=79.0
Q ss_pred HHHHHHhhCCC-CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceE-EEecccccc--ccCC
Q 028547 36 LAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKY-IKMDVRQMD--EFQT 111 (207)
Q Consensus 36 ~~~~l~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~-~~~d~~~~~--~~~~ 111 (207)
+..++..+... .+.+|||+|||+|.++..+++.+..+|+++|+++.|++.+.++. +++.. ...++.... .++.
T Consensus 73 l~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~---~rv~~~~~~ni~~l~~~~l~~ 149 (291)
T 3hp7_A 73 LEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD---DRVRSMEQYNFRYAEPVDFTE 149 (291)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC---TTEEEECSCCGGGCCGGGCTT
T ss_pred HHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cccceecccCceecchhhCCC
Confidence 45566655433 34599999999999999999987779999999999998855432 22222 223444331 1344
Q ss_pred CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.+||+|++...++++ ..++.+++++|+|||.+++.
T Consensus 150 ~~fD~v~~d~sf~sl----------~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 150 GLPSFASIDVSFISL----------NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp CCCSEEEECCSSSCG----------GGTHHHHHHHSCTTCEEEEE
T ss_pred CCCCEEEEEeeHhhH----------HHHHHHHHHHcCcCCEEEEE
Confidence 469999988766654 77899999999999999987
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=102.86 Aligned_cols=120 Identities=14% Similarity=0.108 Sum_probs=92.1
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~ 113 (207)
+.+..+.++.. +|||+|||+|.++..+++.+. .+|+++|+++.+++.|++++... .++.+..+|..+..+ +.+.
T Consensus 7 ~~l~~~v~~g~-~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~-~~~~ 84 (225)
T 3kr9_A 7 ELVASFVSQGA-ILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFE-ETDQ 84 (225)
T ss_dssp HHHHTTSCTTE-EEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC-GGGC
T ss_pred HHHHHhCCCCC-EEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcc-cCcC
Confidence 44555666665 999999999999999999875 58999999999999999987632 368999999976522 1236
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccc
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML 168 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~ 168 (207)
||+|+..++-. .....+++...+.|+++|.+++...........++
T Consensus 85 ~D~IviaG~Gg---------~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L 130 (225)
T 3kr9_A 85 VSVITIAGMGG---------RLIARILEEGLGKLANVERLILQPNNREDDLRIWL 130 (225)
T ss_dssp CCEEEEEEECH---------HHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHH
T ss_pred CCEEEEcCCCh---------HHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH
Confidence 99988654422 45688899999999999999987765444444444
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.7e-14 Score=108.57 Aligned_cols=111 Identities=18% Similarity=0.261 Sum_probs=85.7
Q ss_pred CCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHcc------CCCCceEEEeccccccccCCCCeeEEE
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
..+++|||+|||+|.++..+++. +..+++++|+++.+++.+++++. ..++++++.+|+.+..+...++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 34459999999999999999987 44699999999999999999873 236899999999875333467899999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+..... . .....-....+++.+.++|+|||++++...+
T Consensus 154 ~d~~~~-~--~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 154 VDSTEP-V--GPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp ESCSSC-C--SCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred ECCCCC-C--CcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 865432 1 1111113467899999999999999987543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-14 Score=107.50 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=86.7
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhc-C-CCcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccccCCCC
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~ 113 (207)
++......++.+|||+|||+|.++..+++. + ..+++++|+++.+++.+++++.. ..++.+...|+.+. +++.++
T Consensus 88 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~-~~~~~~ 166 (258)
T 2pwy_A 88 MVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA-ELEEAA 166 (258)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC-CCCTTC
T ss_pred HHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc-CCCCCC
Confidence 444333344459999999999999999987 4 25999999999999999988642 36899999999887 466788
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
||+|++. . .+...+++++.++|+|||.+++.....
T Consensus 167 ~D~v~~~-----~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 167 YDGVALD-----L-------MEPWKVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp EEEEEEE-----S-------SCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred cCEEEEC-----C-------cCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 9999973 1 234578999999999999999987543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.9e-14 Score=105.10 Aligned_cols=121 Identities=14% Similarity=0.048 Sum_probs=93.9
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~ 112 (207)
.+.+..++++.. +|||+|||+|.++..+++.+. .+|+++|+++.+++.|++++... .++.+..+|+.+.. .+.+
T Consensus 12 L~~i~~~v~~g~-~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~-~~~~ 89 (244)
T 3gnl_A 12 LEKVASYITKNE-RIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI-EKKD 89 (244)
T ss_dssp HHHHHTTCCSSE-EEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC-CGGG
T ss_pred HHHHHHhCCCCC-EEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc-Cccc
Confidence 344556666665 999999999999999999875 48999999999999999987632 35899999999873 2334
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccc
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML 168 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~ 168 (207)
+||+|++.++-. .....+++...+.|+++|.|++...........++
T Consensus 90 ~~D~IviagmGg---------~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L 136 (244)
T 3gnl_A 90 AIDTIVIAGMGG---------TLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWS 136 (244)
T ss_dssp CCCEEEEEEECH---------HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHH
T ss_pred cccEEEEeCCch---------HHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHH
Confidence 699988654433 45788899999999999999988765544444444
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-14 Score=113.51 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=80.0
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+++|||||||+|.++..+++.|.++|+++|.++ +++.|++.+... .++.++++++.++. ++ ++||+|++..+-.
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~-lp-e~~DvivsE~~~~ 160 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE-LP-EQVDAIVSEWMGY 160 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC-CS-SCEEEEECCCCBT
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec-CC-ccccEEEeecccc
Confidence 349999999999999999999988999999986 778887765522 46999999999983 34 7899999843222
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
.+ ..+.....++....++|+|||.++-
T Consensus 161 ~l----~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 161 GL----LHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TB----TTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred cc----cccchhhhHHHHHHhhCCCCceECC
Confidence 21 2335778888889999999999875
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.50 E-value=7e-14 Score=102.41 Aligned_cols=115 Identities=15% Similarity=0.293 Sum_probs=81.0
Q ss_pred HHHHHHhhC-CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc------
Q 028547 36 LAPLIKLYV-PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE------ 108 (207)
Q Consensus 36 ~~~~l~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~------ 108 (207)
+.++++.+. .+++.+|||+|||+|.++..+++.+. +|+|+|+++. ...+++.++++|+.+...
T Consensus 13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~-~V~gvD~~~~---------~~~~~v~~~~~D~~~~~~~~~~~~ 82 (191)
T 3dou_A 13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLAR-KIISIDLQEM---------EEIAGVRFIRCDIFKETIFDDIDR 82 (191)
T ss_dssp HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCS-EEEEEESSCC---------CCCTTCEEEECCTTSSSHHHHHHH
T ss_pred HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCC-cEEEEecccc---------ccCCCeEEEEccccCHHHHHHHHH
Confidence 345555442 23345999999999999999999844 9999999873 122589999999988521
Q ss_pred -cC---CCCeeEEEeCcchhhhccCCC------ChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 109 -FQ---TGSFDSVVDKGTLDSLLCGSN------SRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 109 -~~---~~~fD~v~~~~~l~~~~~~~~------~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
+. .++||+|+++...... +.. .......+++.+.++|+|||.|++..+..+.
T Consensus 83 ~~~~~~~~~~D~Vlsd~~~~~~--g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~ 144 (191)
T 3dou_A 83 ALREEGIEKVDDVVSDAMAKVS--GIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM 144 (191)
T ss_dssp HHHHHTCSSEEEEEECCCCCCC--SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred HhhcccCCcceEEecCCCcCCC--CCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence 11 1489999997643211 000 0123467888899999999999998886654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=109.16 Aligned_cols=110 Identities=16% Similarity=0.152 Sum_probs=83.0
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccccCCCC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~ 113 (207)
.++..+..+...+|||+|||+|.++..+++... .+++++|+ +.++. +++... ..+++|..+|+.+. .+ +
T Consensus 175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~--~p--~ 247 (348)
T 3lst_A 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLRE--VP--H 247 (348)
T ss_dssp HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTC--CC--C
T ss_pred HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCC--CC--C
Confidence 344444333445999999999999999998754 38899999 44444 333221 24799999999843 44 8
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
||+|++..++|++ +..+...++++++++|+|||.+++.+..
T Consensus 248 ~D~v~~~~vlh~~-----~d~~~~~~L~~~~~~LkpgG~l~i~e~~ 288 (348)
T 3lst_A 248 ADVHVLKRILHNW-----GDEDSVRILTNCRRVMPAHGRVLVIDAV 288 (348)
T ss_dssp CSEEEEESCGGGS-----CHHHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred CcEEEEehhccCC-----CHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 9999999999988 4445589999999999999999998753
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-13 Score=100.29 Aligned_cols=115 Identities=15% Similarity=0.296 Sum_probs=80.2
Q ss_pred HHHHHHhhC-CCCCCcEEEEcCCCchhhHHHHhcCC---CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc----
Q 028547 36 LAPLIKLYV-PSHHQRILIVGCGNSAFSEGMVDDGY---EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---- 107 (207)
Q Consensus 36 ~~~~l~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~---~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~---- 107 (207)
+.++++.+. .+++.+|||+|||+|.++..+++... .+|+|+|+++.. ...++.++++|+.+..
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~~~~v~~~~~d~~~~~~~~~ 80 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------PIPNVYFIQGEIGKDNMNNI 80 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------CCTTCEEEECCTTTTSSCCC
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------CCCCceEEEccccchhhhhh
Confidence 344454442 23334999999999999999988632 489999999831 1257899999998762
Q ss_pred --------------------ccCCCCeeEEEeCcchhhhccCCCChh------hHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 108 --------------------EFQTGSFDSVVDKGTLDSLLCGSNSRQ------NATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 108 --------------------~~~~~~fD~v~~~~~l~~~~~~~~~~~------~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.++.++||+|+++..+++. +....+ ....+++++.++|+|||.+++..+...
T Consensus 81 ~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~--g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 158 (201)
T 2plw_A 81 KNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCI--GNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS 158 (201)
T ss_dssp -----------CHHHHHHHHHHTTCCEEEEEECCCCCCC--SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred ccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCC--CCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC
Confidence 0456799999998766542 000001 123478999999999999999776543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-14 Score=110.18 Aligned_cols=109 Identities=19% Similarity=0.324 Sum_probs=81.2
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccccCCCCeeEEE
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
..+++|||||||+|..+..+++.. ..+++++|+++.+++.+++++.. .++++++.+|+.+..+...++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 344599999999999999999874 35999999999999999998863 35799999999885333567899999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+... +++ +.........+++.+.++|+|||++++..
T Consensus 187 ~d~~-~~~--~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSS-DPV--GPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC----------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCC-CCC--CcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8653 222 00001122789999999999999999865
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-14 Score=113.45 Aligned_cols=106 Identities=20% Similarity=0.313 Sum_probs=80.7
Q ss_pred HHHHHHhhCCCCCCcEEEEcCC------CchhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc
Q 028547 36 LAPLIKLYVPSHHQRILIVGCG------NSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD 107 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G------~G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~ 107 (207)
+..++..+..+.. +||||||| +|..+..+++. ...+|+|+|+++.+. ....+++|+++|+.++
T Consensus 206 Ye~lL~~l~~~~~-rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~~~~rI~fv~GDa~dl- 276 (419)
T 3sso_A 206 YDRHFRDYRNQQV-RVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------VDELRIRTIQGDQNDA- 276 (419)
T ss_dssp HHHHHGGGTTSCC-EEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------GCBTTEEEEECCTTCH-
T ss_pred HHHHHHhhcCCCC-EEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------hcCCCcEEEEeccccc-
Confidence 3445555544444 99999999 66666666654 225999999999862 1236899999999987
Q ss_pred ccC------CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 108 EFQ------TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 108 ~~~------~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++. .++||+|++... ++. .+....+++++++|||||++++.+.
T Consensus 277 pf~~~l~~~d~sFDlVisdgs-H~~-------~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 277 EFLDRIARRYGPFDIVIDDGS-HIN-------AHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp HHHHHHHHHHCCEEEEEECSC-CCH-------HHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred chhhhhhcccCCccEEEECCc-ccc-------hhHHHHHHHHHHhcCCCeEEEEEec
Confidence 454 689999999754 444 7889999999999999999999764
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=105.00 Aligned_cols=107 Identities=15% Similarity=0.143 Sum_probs=84.8
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-C-CCcEEEEeCCHHHHHHHHHHccC--CC-CceEEEeccccccccCCC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSN--RP-QLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~~~~~~~~--~~-~~~~~~~d~~~~~~~~~~ 112 (207)
.++......++.+|||+|||+|.++..+++. + ..+++++|+++.+++.+++++.. .. ++.+.+.|+.+. ++.+
T Consensus 84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~ 161 (255)
T 3mb5_A 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG--IEEE 161 (255)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC--CCCC
T ss_pred HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc--cCCC
Confidence 3344433344459999999999999999988 4 35999999999999999998752 23 499999999975 5678
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+||+|+++. .+...+++++.++|+|||.+++...
T Consensus 162 ~~D~v~~~~------------~~~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 162 NVDHVILDL------------PQPERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp SEEEEEECS------------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CcCEEEECC------------CCHHHHHHHHHHHcCCCCEEEEEEC
Confidence 899999742 2335679999999999999998764
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=110.22 Aligned_cols=98 Identities=22% Similarity=0.272 Sum_probs=81.6
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+|||+|||+|.++..+++..+ .+++++|+ +.+++.++++ .+++|+.+|+.+. ++.. |+|++..++|++
T Consensus 205 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~~--~p~~--D~v~~~~vlh~~- 274 (368)
T 3reo_A 205 TTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF----SGVEHLGGDMFDG--VPKG--DAIFIKWICHDW- 274 (368)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----TTEEEEECCTTTC--CCCC--SEEEEESCGGGB-
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc----CCCEEEecCCCCC--CCCC--CEEEEechhhcC-
Confidence 5999999999999999998754 48999999 8777665432 5899999999873 4543 999999999987
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+..+...+++++++.|+|||.+++.+...
T Consensus 275 ----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 303 (368)
T 3reo_A 275 ----SDEHCLKLLKNCYAALPDHGKVIVAEYIL 303 (368)
T ss_dssp ----CHHHHHHHHHHHHHHSCTTCEEEEEECCC
T ss_pred ----CHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 55667799999999999999999987543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=109.55 Aligned_cols=109 Identities=17% Similarity=0.326 Sum_probs=83.7
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccc-cCCCCeeEE
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDE-FQTGSFDSV 117 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~-~~~~~fD~v 117 (207)
..+++|||||||+|.++..+++.. ..+|+++|+++.+++.+++++.. .++++++++|+.+..+ .+.++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 344599999999999999999874 35999999999999999998752 3689999999987522 345789999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
++...-. . +.........+++.+.++|+|||.+++..
T Consensus 199 i~d~~~p-~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 199 IVDSSDP-I--GPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EECCCCT-T--SGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCCCc-c--CcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9864311 1 00011125789999999999999999863
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.9e-14 Score=107.96 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=82.9
Q ss_pred CcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+|||+|||+|.++..+++.. ..+|+++|+++.+++.+++++... .++.++++|+.+. +. .++||+|++..+.
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~-~~~~D~Vi~d~p~-- 196 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL-KDVADRVIMGYVH-- 196 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC-TTCEEEEEECCCS--
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc-cCCceEEEECCcc--
Confidence 499999999999999999874 359999999999999999987632 5789999999987 54 6789999987653
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
....++..+.+.|+|||.+++..+..
T Consensus 197 ---------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ---------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ---------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ---------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 33557888999999999999877543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-14 Score=106.10 Aligned_cols=100 Identities=14% Similarity=0.110 Sum_probs=82.2
Q ss_pred CCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccC--CCCeeEEEeCc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQ--TGSFDSVVDKG 121 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~--~~~fD~v~~~~ 121 (207)
+.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++... .++.++++|+.+..+.. .++||+|++..
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 134 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA 134 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence 3499999999999999999874 249999999999999999987532 36899999998853333 57899999865
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.. .+...+++.+.++|+|||.+++.+
T Consensus 135 ~~----------~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 135 AK----------GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp GG----------SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred CH----------HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 43 355789999999999999999875
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=106.34 Aligned_cols=108 Identities=18% Similarity=0.295 Sum_probs=82.8
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc------------CCCCceEEEeccccccccCCCCe
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS------------NRPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~------------~~~~~~~~~~d~~~~~~~~~~~f 114 (207)
.+++|||+|||+|.++..+++.+..+++++|+++.+++.+++++. ..++++++.+|+.+..+. .++|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 345999999999999999998854699999999999999999871 125789999998875333 6789
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|+|++....+ . +.........+++.+.++|+|||++++...
T Consensus 154 D~Ii~d~~~~-~--~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 154 DVIIADSTDP-V--GPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp EEEEEECCCC-C-------TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEECCCCC-C--CcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 9999865422 1 000111247889999999999999998753
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-14 Score=105.14 Aligned_cols=98 Identities=17% Similarity=0.122 Sum_probs=79.5
Q ss_pred CcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 49 QRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++... .+++++++|+.+..+...+ ||+|++...
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~- 135 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD- 135 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT-
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC-
Confidence 499999999999999998863 249999999999999999876532 3689999999875333345 999997632
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..+...+++++.++|+|||.+++..
T Consensus 136 ---------~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 136 ---------VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp ---------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred ---------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 1456889999999999999998854
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=109.45 Aligned_cols=99 Identities=24% Similarity=0.276 Sum_probs=82.2
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
...+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++ ..+++|+.+|+.+ +++.+ |+|++..++|+
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~--~~p~~--D~v~~~~vlh~ 271 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ----FPGVTHVGGDMFK--EVPSG--DTILMKWILHD 271 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTT--CCCCC--SEEEEESCGGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh----cCCeEEEeCCcCC--CCCCC--CEEEehHHhcc
Confidence 335999999999999999998754 48999999 777766543 2589999999987 34544 99999999998
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+ +.++...+++++++.|+|||.+++.+..
T Consensus 272 ~-----~d~~~~~~L~~~~~~L~pgG~l~i~e~~ 300 (364)
T 3p9c_A 272 W-----SDQHCATLLKNCYDALPAHGKVVLVQCI 300 (364)
T ss_dssp S-----CHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred C-----CHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 7 5567789999999999999999998754
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.8e-14 Score=106.89 Aligned_cols=100 Identities=12% Similarity=0.058 Sum_probs=81.1
Q ss_pred CCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccccc------CCCCeeE
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEF------QTGSFDS 116 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~------~~~~fD~ 116 (207)
+++|||+|||+|..+..+++.. ..+++++|+++.+++.+++++... .+++++.+|+.+..+. ..++||+
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 159 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 159 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence 3499999999999999998862 249999999999999999987532 4689999999875322 1578999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|++.... .....+++.+.++|+|||++++..
T Consensus 160 V~~d~~~----------~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 160 IFVDADK----------DNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEECSCS----------TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEcCch----------HHHHHHHHHHHHhCCCCeEEEEec
Confidence 9976431 456889999999999999998865
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=108.65 Aligned_cols=110 Identities=16% Similarity=0.239 Sum_probs=81.8
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccC-------------CCCceEEEec
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSN-------------RPQLKYIKMD 102 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~-------------~~~~~~~~~d 102 (207)
.++..+...++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.+++++.. ..++.+..+|
T Consensus 96 ~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d 175 (336)
T 2b25_A 96 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 175 (336)
T ss_dssp HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence 3444443444459999999999999999987 54 5999999999999999998652 2579999999
Q ss_pred ccccc-ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 103 VRQMD-EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 103 ~~~~~-~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+.+.. +++.++||+|++...-. ..+++++.++|+|||.+++....
T Consensus 176 ~~~~~~~~~~~~fD~V~~~~~~~------------~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 176 ISGATEDIKSLTFDAVALDMLNP------------HVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp TTCCC-------EEEEEECSSST------------TTTHHHHGGGEEEEEEEEEEESS
T ss_pred hHHcccccCCCCeeEEEECCCCH------------HHHHHHHHHhcCCCcEEEEEeCC
Confidence 98863 34567899999853211 23789999999999999987643
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-13 Score=106.19 Aligned_cols=115 Identities=10% Similarity=0.059 Sum_probs=86.4
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeC
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
.+++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++.. ..++.+++.|+.+.. ...++||+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~-~~~~~fD~Il~d 194 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG-ELNVEFDKILLD 194 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG-GGCCCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcc-cccccCCEEEEe
Confidence 3444599999999999999999863 24899999999999999998752 257899999999873 345689999986
Q ss_pred cchhhhcc-CCC-------Ch-------hhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 121 GTLDSLLC-GSN-------SR-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 121 ~~l~~~~~-~~~-------~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
.+...... ... .. .....+++++.++|+|||.+++++++.
T Consensus 195 ~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 195 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 55332210 000 11 123689999999999999999988643
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.48 E-value=9.4e-14 Score=107.39 Aligned_cols=109 Identities=19% Similarity=0.229 Sum_probs=85.8
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-C-CCcEEEEeCCHHHHHHHHHHccC-----CCCceEEEeccccccccC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSN-----RPQLKYIKMDVRQMDEFQ 110 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~~~~~~~~-----~~~~~~~~~d~~~~~~~~ 110 (207)
.++......++.+|||+|||+|.++..+++. + ..+++++|+++.+++.+++++.. ..++.+.+.|+.+. +++
T Consensus 90 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-~~~ 168 (280)
T 1i9g_A 90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELP 168 (280)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-CCC
T ss_pred HHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc-CCC
Confidence 3444433344459999999999999999985 3 24999999999999999988642 25899999999887 456
Q ss_pred CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
.++||+|++.. .+...+++++.++|+|||.+++.+..
T Consensus 169 ~~~~D~v~~~~------------~~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 169 DGSVDRAVLDM------------LAPWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp TTCEEEEEEES------------SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCceeEEEECC------------cCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 78899999732 23346899999999999999998754
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=105.60 Aligned_cols=116 Identities=15% Similarity=0.184 Sum_probs=86.2
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEecccccccc---CCCCeeEE
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEF---QTGSFDSV 117 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~---~~~~fD~v 117 (207)
.+++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++... .++.+++.|+.+.... ..++||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 344459999999999999999884 3259999999999999999987632 4899999999886321 25789999
Q ss_pred EeCcchhhhccCC----C-------ChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 118 VDKGTLDSLLCGS----N-------SRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 118 ~~~~~l~~~~~~~----~-------~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
++..+........ . .......+++.+.++|+|||.+++.+++.
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 9875543221000 0 01345789999999999999999988643
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=111.63 Aligned_cols=124 Identities=17% Similarity=0.124 Sum_probs=92.2
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--C-CceEEEecccccccc---C
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--P-QLKYIKMDVRQMDEF---Q 110 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~-~~~~~~~d~~~~~~~---~ 110 (207)
...+..+..+. .+|||+|||+|.++..+++.+..+|+++|+++.+++.+++++... . ++.|+++|+.+..+. .
T Consensus 208 ~~~~~~~~~~~-~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~ 286 (396)
T 2as0_A 208 RLALEKWVQPG-DRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK 286 (396)
T ss_dssp HHHHGGGCCTT-CEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT
T ss_pred HHHHHHHhhCC-CeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhh
Confidence 34454443233 499999999999999999987669999999999999999987632 2 789999999876321 2
Q ss_pred CCCeeEEEeCcchhhhccC--CCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 111 TGSFDSVVDKGTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
..+||+|++..+....... .........++..+.++|+|||.+++.+++..
T Consensus 287 ~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 287 GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 5789999987554221000 00015677889999999999999999886554
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.5e-14 Score=104.84 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=80.3
Q ss_pred CCCcEEEEcCCCchhhHHHHhc-CC------CcEEEEeCCHHHHHHHHHHccC-------CCCceEEEeccccccccCCC
Q 028547 47 HHQRILIVGCGNSAFSEGMVDD-GY------EDVVNVDISSVVIEAMMKKYSN-------RPQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~-~~------~~v~~~D~s~~~i~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~ 112 (207)
++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.+++++.. ..++.+...|+.+..+ ..+
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 162 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP-PNA 162 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG-GGC
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCC-cCC
Confidence 3349999999999999998884 21 3899999999999999987653 2478999999987421 237
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+||+|++...++++ .+++.+.|+|||.+++....
T Consensus 163 ~fD~I~~~~~~~~~-------------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 163 PYNAIHVGAAAPDT-------------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp SEEEEEECSCBSSC-------------CHHHHHTEEEEEEEEEEESC
T ss_pred CccEEEECCchHHH-------------HHHHHHHhcCCCEEEEEEec
Confidence 89999999888766 37789999999999987743
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.3e-14 Score=112.24 Aligned_cols=123 Identities=13% Similarity=0.120 Sum_probs=91.3
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--C--CceEEEecccccccc---C
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--P--QLKYIKMDVRQMDEF---Q 110 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~--~~~~~~~d~~~~~~~---~ 110 (207)
.++...+.+ +.+|||+|||+|.++..+++.+..+|+++|+++.+++.+++++... . +++|+++|+.+..+. .
T Consensus 204 ~~~~~~~~~-~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~ 282 (385)
T 2b78_A 204 NELINGSAA-GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH 282 (385)
T ss_dssp HHHHHTTTB-TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT
T ss_pred HHHHHHhcC-CCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHh
Confidence 444444333 3499999999999999999977669999999999999999987632 3 799999999875221 2
Q ss_pred CCCeeEEEeCcchhhhc--cCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 111 TGSFDSVVDKGTLDSLL--CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
..+||+|++..+..... ...........+++.+.++|+|||.+++...+..
T Consensus 283 ~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~ 335 (385)
T 2b78_A 283 HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335 (385)
T ss_dssp TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 45899999976653210 1111224667788899999999999998876554
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.5e-14 Score=103.52 Aligned_cols=86 Identities=23% Similarity=0.313 Sum_probs=74.1
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~ 128 (207)
.+|||+|||+|.++..++ .+++++|+++. ++.+.++|+.+. +++.++||+|++..++++
T Consensus 69 ~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~-------------~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~--- 127 (215)
T 2zfu_A 69 LVVADFGCGDCRLASSIR----NPVHCFDLASL-------------DPRVTVCDMAQV-PLEDESVDVAVFCLSLMG--- 127 (215)
T ss_dssp SCEEEETCTTCHHHHHCC----SCEEEEESSCS-------------STTEEESCTTSC-SCCTTCEEEEEEESCCCS---
T ss_pred CeEEEECCcCCHHHHHhh----ccEEEEeCCCC-------------CceEEEeccccC-CCCCCCEeEEEEehhccc---
Confidence 499999999999988773 38999999986 568899999886 577889999999888863
Q ss_pred CCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 129 GSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 129 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
.+...+++++.++|+|||.+++.++..
T Consensus 128 -----~~~~~~l~~~~~~L~~gG~l~i~~~~~ 154 (215)
T 2zfu_A 128 -----TNIRDFLEEANRVLKPGGLLKVAEVSS 154 (215)
T ss_dssp -----SCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred -----cCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 578899999999999999999987543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=118.45 Aligned_cols=122 Identities=12% Similarity=0.076 Sum_probs=92.4
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----CCceEEEeccccccccCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVRQMDEFQT 111 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d~~~~~~~~~ 111 (207)
....+..+. + +++|||+|||+|.++..++..+..+|+++|+|+.+++.+++++... .++.++++|+.+..+...
T Consensus 530 ~r~~l~~~~-~-g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~ 607 (703)
T 3v97_A 530 ARRMLGQMS-K-GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREAN 607 (703)
T ss_dssp HHHHHHHHC-T-TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCC
T ss_pred HHHHHHHhc-C-CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcC
Confidence 344444443 3 3499999999999999999987767999999999999999987622 369999999998644456
Q ss_pred CCeeEEEeCcchhhhcc----CCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 112 GSFDSVVDKGTLDSLLC----GSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
++||+|+++.+...-.. ......+...+++.+.++|+|||.+++.+..
T Consensus 608 ~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 608 EQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 78999999765421100 0011257888999999999999999987744
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-14 Score=109.98 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=81.8
Q ss_pred CCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccC-----CCCeeEE
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQ-----TGSFDSV 117 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~-----~~~fD~v 117 (207)
+++|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++... .+++++++|+.+..+.. .++||+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 3499999999999999999852 249999999999999988887532 47999999998753322 4789999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++.... .....+++++.++|+|||++++...
T Consensus 141 ~~d~~~----------~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 141 FIDADK----------TNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEESCG----------GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEcCCh----------HHhHHHHHHHHHhcCCCeEEEEECC
Confidence 976442 4567789999999999999998653
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=96.97 Aligned_cols=96 Identities=17% Similarity=0.309 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCC-CceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRP-QLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
++.+|||+|||+|.++..+++.+..+++++|+++.+++.++++..... ++.++++|+.+. + .+||+|+++.+++.
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~---~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF-N---SRVDIVIMNPPFGS 124 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC-C---CCCSEEEECCCCSS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHc-C---CCCCEEEEcCCCcc
Confidence 345999999999999999999876689999999999999999876432 789999999886 2 48999999988776
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEE
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVY 153 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~ 153 (207)
. .......+++.+.+++ |+.+
T Consensus 125 ~-----~~~~~~~~l~~~~~~l--~~~~ 145 (207)
T 1wy7_A 125 Q-----RKHADRPFLLKAFEIS--DVVY 145 (207)
T ss_dssp S-----STTTTHHHHHHHHHHC--SEEE
T ss_pred c-----cCCchHHHHHHHHHhc--CcEE
Confidence 4 2233456788888888 4444
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=110.17 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=80.2
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
..+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++. ++++++.+|+.+. ++. ||+|++..++|++
T Consensus 210 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~~--~~~--~D~v~~~~~lh~~ 280 (372)
T 1fp1_D 210 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL----SGIEHVGGDMFAS--VPQ--GDAMILKAVCHNW 280 (372)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----TTEEEEECCTTTC--CCC--EEEEEEESSGGGS
T ss_pred CCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc----CCCEEEeCCcccC--CCC--CCEEEEecccccC
Confidence 34999999999999999998864 37888899 8888766542 5799999999873 443 9999999999988
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+......++++++++|+|||.+++.++
T Consensus 281 -----~d~~~~~~l~~~~~~L~pgG~l~i~e~ 307 (372)
T 1fp1_D 281 -----SDEKCIEFLSNCHKALSPNGKVIIVEF 307 (372)
T ss_dssp -----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 333445999999999999999999864
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.7e-13 Score=105.29 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=84.4
Q ss_pred cEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEecccccc-ccCCCCeeEEEeCcchhh
Q 028547 50 RILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMD-EFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~-~~~~~~fD~v~~~~~l~~ 125 (207)
+|||||||+|.++..+++. ...+++++|+++.+++.+++++.. .++++++++|+.+.. ..+.++||+|++....+.
T Consensus 92 rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~ 171 (317)
T 3gjy_A 92 RITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGA 171 (317)
T ss_dssp EEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTS
T ss_pred EEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCcc
Confidence 9999999999999999984 224899999999999999999863 368999999998863 234678999998643221
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
.....-....+++.++++|+|||++++...+.
T Consensus 172 ---~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~ 203 (317)
T 3gjy_A 172 ---ITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH 203 (317)
T ss_dssp ---CCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred ---ccchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 01111234789999999999999999877543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=104.09 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=86.8
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
...+|+|+|||+|.++..+++..+ .+++..|. +.+++.++++.... .+++|+.+|+.+. +. ..+|+|++..++
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~-~~--~~~D~~~~~~vl 254 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKD-PL--PEADLYILARVL 254 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTS-CC--CCCSEEEEESSG
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccC-CC--CCceEEEeeeec
Confidence 334999999999999999999865 37888886 78999999887632 6899999999875 33 357999999999
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
|.+ +.++...+|+++++.|+|||.+++....
T Consensus 255 h~~-----~d~~~~~iL~~~~~al~pgg~lli~e~~ 285 (353)
T 4a6d_A 255 HDW-----ADGKCSHLLERIYHTCKPGGGILVIESL 285 (353)
T ss_dssp GGS-----CHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred ccC-----CHHHHHHHHHHHHhhCCCCCEEEEEEee
Confidence 987 5566788999999999999999998853
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=105.08 Aligned_cols=107 Identities=9% Similarity=0.106 Sum_probs=85.3
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCee
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD 115 (207)
.+.....+.. +|||+|||+|.++..+++.+.++|+++|+++.+++.+++++... .++.++++|+.++. ..+.||
T Consensus 118 ri~~~~~~g~-~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~--~~~~~D 194 (278)
T 3k6r_A 118 RMAKVAKPDE-LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP--GENIAD 194 (278)
T ss_dssp HHHHHCCTTC-EEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--CCSCEE
T ss_pred HHHHhcCCCC-EEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc--cccCCC
Confidence 3444445555 99999999999999999988679999999999999999987632 46899999999873 567899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
.|+++.+... ..++..+.++|++||++.+..+.
T Consensus 195 ~Vi~~~p~~~-----------~~~l~~a~~~lk~gG~ih~~~~~ 227 (278)
T 3k6r_A 195 RILMGYVVRT-----------HEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp EEEECCCSSG-----------GGGHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEECCCCcH-----------HHHHHHHHHHcCCCCEEEEEeee
Confidence 9998755432 34567778999999998776543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-13 Score=102.74 Aligned_cols=108 Identities=14% Similarity=0.171 Sum_probs=82.9
Q ss_pred CcEEEEcCCC--chhhHHHHhc-C-CCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccc-----cCCCCee--
Q 028547 49 QRILIVGCGN--SAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDE-----FQTGSFD-- 115 (207)
Q Consensus 49 ~~vLdiG~G~--G~~~~~l~~~-~-~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~-----~~~~~fD-- 115 (207)
.+|||||||. +.++..+++. . ..+|+++|.|+.+++.+++++... .++.|++.|+.+... ...+.||
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~ 159 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLT 159 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTT
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcC
Confidence 5899999997 4444544442 2 249999999999999999988753 368999999988521 1124455
Q ss_pred ---EEEeCcchhhhccCCCChh-hHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 116 ---SVVDKGTLDSLLCGSNSRQ-NATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 116 ---~v~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.|+++.++||+ +.. ++..+++++++.|+|||.|++.++..+
T Consensus 160 ~p~av~~~avLH~l-----~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 160 RPVALTVIAIVHFV-----LDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp SCCEEEEESCGGGS-----CGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred CcchHHhhhhHhcC-----CchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 68899999998 222 268899999999999999999987654
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=104.89 Aligned_cols=97 Identities=13% Similarity=0.201 Sum_probs=79.7
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccccCCCCeeEEE
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
...+++|||+|||+|.++..+++.+ .+++++|+++.+++.+++++.. .++++++.+|+.+.. ++||+|+
T Consensus 70 ~~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~fD~Ii 144 (262)
T 2cmg_A 70 KKELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKYDLIF 144 (262)
T ss_dssp SSCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCEEEEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhCCEEE
Confidence 3444599999999999999998876 7999999999999999887643 357899999998862 7899999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+.. .++..+++.+.+.|+|||++++...
T Consensus 145 ~d~------------~dp~~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 145 CLQ------------EPDIHRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp ESS------------CCCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ECC------------CChHHHHHHHHHhcCCCcEEEEEcC
Confidence 762 1223489999999999999998653
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.1e-14 Score=105.39 Aligned_cols=96 Identities=14% Similarity=0.109 Sum_probs=76.1
Q ss_pred CcEEEEcCCCchhhHHHHhc----CC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc--cccC-CCCeeEEEeC
Q 028547 49 QRILIVGCGNSAFSEGMVDD----GY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM--DEFQ-TGSFDSVVDK 120 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~----~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~--~~~~-~~~fD~v~~~ 120 (207)
.+|||||||+|..+..+++. +. .+|+++|+++.+++.++. . ..+++++++|+.+. .+.. ..+||+|++.
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-~--~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d 159 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-D--MENITLHQGDCSDLTTFEHLREMAHPLIFID 159 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-G--CTTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-c--CCceEEEECcchhHHHHHhhccCCCCEEEEC
Confidence 49999999999999999886 32 499999999999887763 2 25899999999884 2333 3479999975
Q ss_pred cchhhhccCCCChhhHHHHHHHHHH-hcCCCcEEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWR-VLKDKGVYILVT 157 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~-~L~pgG~~~~~~ 157 (207)
.. + .+...++.++.+ +|+|||.+++..
T Consensus 160 ~~-~---------~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 160 NA-H---------ANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp SS-C---------SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred Cc-h---------HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 43 1 256779999997 999999999964
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=103.07 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=80.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccc-c-----CCCCeeE
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDE-F-----QTGSFDS 116 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~-~-----~~~~fD~ 116 (207)
+++|||+|||+|..+..+++.. ..+++++|+++.+++.+++++... .+++++.+|+.+..+ + ..++||+
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 150 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF 150 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence 3499999999999999998862 249999999999999999987532 368999999887522 2 1578999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|++... ......+++.+.++|+|||++++..
T Consensus 151 I~~d~~----------~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 151 GFVDAD----------KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEECSC----------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECCc----------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 997633 2456889999999999999998865
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=102.35 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=80.5
Q ss_pred CCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccc--------------
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDE-------------- 108 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~-------------- 108 (207)
+.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++... .++.+..+|+.+..+
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 140 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD 140 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence 3499999999999999999873 249999999999999999987532 248999999876422
Q ss_pred cC-C-CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 109 FQ-T-GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 109 ~~-~-~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
++ . ++||+|++.... .....+++.+.++|+|||.+++..
T Consensus 141 f~~~~~~fD~I~~~~~~----------~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 141 FAFGPSSIDLFFLDADK----------ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TCCSTTCEEEEEECSCG----------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccCCCCCcCEEEEeCCH----------HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 11 2 789999987443 455788999999999999999876
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-13 Score=108.53 Aligned_cols=123 Identities=14% Similarity=0.152 Sum_probs=92.2
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---C-CceEEEecccccccc---
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---P-QLKYIKMDVRQMDEF--- 109 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~-~~~~~~~d~~~~~~~--- 109 (207)
...+..+ . .+.+|||+|||+|.++..+++.+..+|+++|+++.+++.+++++... . ++.|+++|+.+..+.
T Consensus 212 ~~~l~~~-~-~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~ 289 (396)
T 3c0k_A 212 RLATRRY-V-ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD 289 (396)
T ss_dssp HHHHHHH-C-TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHh-h-CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHh
Confidence 3444444 3 33499999999999999999987669999999999999999987622 2 789999999886321
Q ss_pred CCCCeeEEEeCcchhhhccC--CCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 110 QTGSFDSVVDKGTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 110 ~~~~fD~v~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
...+||+|++..+....... .........++..+.+.|+|||.+++.+.+..
T Consensus 290 ~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 343 (396)
T 3c0k_A 290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL 343 (396)
T ss_dssp TTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred cCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 14689999998654321000 01125678899999999999999999876544
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-13 Score=103.60 Aligned_cols=107 Identities=15% Similarity=0.245 Sum_probs=72.1
Q ss_pred HHHHHHhhCCC-CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-----CCceEEEecccccccc
Q 028547 36 LAPLIKLYVPS-HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-----PQLKYIKMDVRQMDEF 109 (207)
Q Consensus 36 ~~~~l~~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-----~~~~~~~~d~~~~~~~ 109 (207)
+..++..+... .+++|||+|||+|.++..+++.+..+|+|+|+|+.+++.++++.... .++.+...+ .+
T Consensus 25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~-----~~ 99 (232)
T 3opn_A 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLA-----DF 99 (232)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGG-----GC
T ss_pred HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHh-----Hc
Confidence 45566655433 33599999999999999999997669999999999999987754321 122222211 11
Q ss_pred CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 110 QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 110 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
....||.+.+..++..+ ..++++++++|+|||.+++..
T Consensus 100 ~~~~~d~~~~D~v~~~l----------~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 100 EQGRPSFTSIDVSFISL----------DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp CSCCCSEEEECCSSSCG----------GGTHHHHHHHSCTTCEEEEEE
T ss_pred CcCCCCEEEEEEEhhhH----------HHHHHHHHHhccCCCEEEEEE
Confidence 11124544444333322 668999999999999999863
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.7e-13 Score=100.04 Aligned_cols=100 Identities=14% Similarity=0.224 Sum_probs=81.3
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
.++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++.... .++.+...|+.+.. .+.++||+|++..
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~- 166 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE-VPEGIFHAAFVDV- 166 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC-CCTTCBSEEEECS-
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc-cCCCcccEEEECC-
Confidence 34459999999999999999988 449999999999999999886532 57899999998852 2567899999742
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
.+...+++++.++|+|||.+++....
T Consensus 167 -----------~~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 167 -----------REPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp -----------SCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred -----------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 23356789999999999999998853
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.4e-13 Score=103.12 Aligned_cols=100 Identities=15% Similarity=0.237 Sum_probs=81.9
Q ss_pred CCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
.++.+|||+|||+|.++..+++. +. .+++++|+++.+++.+++++... .++.+...|+.+. ++.++||+|+++
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~V~~~ 188 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG--FDEKDVDALFLD 188 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--CSCCSEEEEEEC
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc--ccCCccCEEEEC
Confidence 34459999999999999999987 43 59999999999999999987532 4789999999886 456789999974
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
. .+...+++++.++|+|||.+++....
T Consensus 189 ~------------~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 189 V------------PDPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp C------------SCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred C------------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 2 23356789999999999999998753
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=105.67 Aligned_cols=103 Identities=13% Similarity=0.142 Sum_probs=83.3
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEecccccccc-CCCCeeEEEeCcch
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEF-QTGSFDSVVDKGTL 123 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~-~~~~fD~v~~~~~l 123 (207)
+.+|||+| |+|.++..++..+. .+|+++|+++.+++.+++++.. ..++.++++|+.+..+. ..++||+|+++.++
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~ 251 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPE 251 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCS
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCC
Confidence 45999999 99999999998875 6999999999999999998763 23799999999983232 34689999999876
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcE-EEEEEeC
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGV-YILVTYG 159 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~-~~~~~~~ 159 (207)
+.. ....+++++.++|+|||. +++....
T Consensus 252 ~~~--------~~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 252 TLE--------AIRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp SHH--------HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred chH--------HHHHHHHHHHHHcccCCeEEEEEEec
Confidence 643 358899999999999994 4555443
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-13 Score=109.68 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=86.4
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEecccccccc---CCCCeeEEEeCcch
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEF---QTGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~---~~~~fD~v~~~~~l 123 (207)
.+|||+|||+|.++..++.. ..+|+++|+++.+++.+++++... .++.++++|+.+..+. ...+||+|++..+.
T Consensus 211 ~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~ 289 (382)
T 1wxx_A 211 ERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 289 (382)
T ss_dssp EEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCC
Confidence 49999999999999999988 459999999999999999987632 4689999999886321 25789999987554
Q ss_pred hhhccCC--CChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 124 DSLLCGS--NSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 124 ~~~~~~~--~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
....... ........++..+.++|+|||.+++.+++..
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 290 FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 2210000 0014667899999999999999999886554
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=101.77 Aligned_cols=87 Identities=16% Similarity=0.274 Sum_probs=69.2
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~ 112 (207)
+..++......++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++.... .++.++++|+.+. +++
T Consensus 17 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~-~~~-- 92 (285)
T 1zq9_A 17 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT-DLP-- 92 (285)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS-CCC--
T ss_pred HHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc-cch--
Confidence 34455544344445999999999999999999866 9999999999999999987532 4789999999887 333
Q ss_pred CeeEEEeCcchhhh
Q 028547 113 SFDSVVDKGTLDSL 126 (207)
Q Consensus 113 ~fD~v~~~~~l~~~ 126 (207)
.||+|+++.++++.
T Consensus 93 ~fD~vv~nlpy~~~ 106 (285)
T 1zq9_A 93 FFDTCVANLPYQIS 106 (285)
T ss_dssp CCSEEEEECCGGGH
T ss_pred hhcEEEEecCcccc
Confidence 79999998776653
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-13 Score=106.94 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeC----CHHHHHHHHHHccCCCCceEEEe-ccccccccCCCCeeEEEeC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDI----SSVVIEAMMKKYSNRPQLKYIKM-DVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~----s~~~i~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~fD~v~~~ 120 (207)
+++.+|||+|||+|.++..+++. .+|+++|+ ++..++.........+++.|+++ |+.++ +.++||+|++.
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l---~~~~fD~V~sd 155 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFI---PPERCDTLLCD 155 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTS---CCCCCSEEEEC
T ss_pred CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccC---CcCCCCEEEEC
Confidence 34459999999999999999988 38999998 45333211100001146888888 87765 35689999997
Q ss_pred cchhhhccCCCChhhH---HHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 121 GTLDSLLCGSNSRQNA---TQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~---~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
..++ . +. ...+. ..++..+.++|+|||.|++..+..
T Consensus 156 ~~~~-~--g~-~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 156 IGES-S--PN-PTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCCC-C--SS-HHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred Cccc-c--Cc-chhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 6543 1 00 00122 257888999999999999877655
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-13 Score=105.58 Aligned_cols=113 Identities=18% Similarity=0.102 Sum_probs=77.2
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---C-CCceEE--EeccccccccC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---R-PQLKYI--KMDVRQMDEFQ 110 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~-~~~~~~--~~d~~~~~~~~ 110 (207)
..+++....+++.+|||+|||+|.++..+++. .+|+|+|+++ ++..++++... . .++.|+ ++|+.++ +
T Consensus 72 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l---~ 145 (276)
T 2wa2_A 72 AWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM---E 145 (276)
T ss_dssp HHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC---C
T ss_pred HHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC---C
Confidence 33444333334459999999999999999988 4999999998 43332222111 0 168899 8898886 3
Q ss_pred CCCeeEEEeCcchhhhccCCCChhhH---HHHHHHHHHhcCCCc--EEEEEEeC
Q 028547 111 TGSFDSVVDKGTLDSLLCGSNSRQNA---TQMLKEVWRVLKDKG--VYILVTYG 159 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~~~~~~~---~~~l~~~~~~L~pgG--~~~~~~~~ 159 (207)
+++||+|++... +.. +. ...+. ..+++.+.++|+||| .|++..+.
T Consensus 146 ~~~fD~Vvsd~~-~~~--~~-~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 146 PFQADTVLCDIG-ESN--PT-AAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCCCSEEEECCC-CCC--SC-HHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCCcCEEEECCC-cCC--Cc-hhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 678999999755 221 00 00111 137899999999999 99998776
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-13 Score=105.42 Aligned_cols=114 Identities=11% Similarity=0.074 Sum_probs=77.7
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---C-CCceEE--Eecccccccc
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---R-PQLKYI--KMDVRQMDEF 109 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~-~~~~~~--~~d~~~~~~~ 109 (207)
+..+++....+++.+|||+|||+|.++..+++. .+|+|+|+++ ++..++++... . .++.|+ ++|+.++
T Consensus 63 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l--- 136 (265)
T 2oxt_A 63 LAWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL--- 136 (265)
T ss_dssp HHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS---
T ss_pred HHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC---
Confidence 344444433344459999999999999999988 4999999998 43222211110 0 168888 8898886
Q ss_pred CCCCeeEEEeCcchhhhccCCCChhhH---HHHHHHHHHhcCCCc--EEEEEEeC
Q 028547 110 QTGSFDSVVDKGTLDSLLCGSNSRQNA---TQMLKEVWRVLKDKG--VYILVTYG 159 (207)
Q Consensus 110 ~~~~fD~v~~~~~l~~~~~~~~~~~~~---~~~l~~~~~~L~pgG--~~~~~~~~ 159 (207)
++++||+|++... +.. +. ...+. ..+++.+.++|+||| .|++..+.
T Consensus 137 ~~~~fD~V~sd~~-~~~--~~-~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 137 PVERTDVIMCDVG-ESS--PK-WSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCCCCSEEEECCC-CCC--SC-HHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCCCcEEEEeCc-ccC--Cc-cchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 3678999999755 221 10 00111 137899999999999 99998876
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.6e-13 Score=106.48 Aligned_cols=96 Identities=18% Similarity=0.255 Sum_probs=79.8
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+|||+|||+|.++..+++... .+++++|+ +.+++.+++. ++++|..+|+.+. ++ .||+|++..++|++
T Consensus 190 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~~--~p--~~D~v~~~~~lh~~- 259 (352)
T 1fp2_A 190 ESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----NNLTYVGGDMFTS--IP--NADAVLLKYILHNW- 259 (352)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----TTEEEEECCTTTC--CC--CCSEEEEESCGGGS-
T ss_pred ceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----CCcEEEeccccCC--CC--CccEEEeehhhccC-
Confidence 4999999999999999998743 48999999 8888776542 4699999999763 34 39999999999988
Q ss_pred cCCCChhhHHHHHHHHHHhcCC---CcEEEEEEe
Q 028547 128 CGSNSRQNATQMLKEVWRVLKD---KGVYILVTY 158 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~p---gG~~~~~~~ 158 (207)
+......++++++++|+| ||.+++.+.
T Consensus 260 ----~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 260 ----TDKDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp ----CHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred ----CHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 333445999999999999 999999874
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-12 Score=103.39 Aligned_cols=110 Identities=13% Similarity=0.150 Sum_probs=82.5
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeC
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
..++.+|||+|||+|.++..++..+. .+++|+|+++.+++.+++++... .++.+.++|+.+. +.+.++||+|+++
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~-~~~~~~fD~Ii~n 293 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL-SQYVDSVDFAISN 293 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG-GGTCSCEEEEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC-CcccCCcCEEEEC
Confidence 34445999999999999999999865 48999999999999999987632 4789999999998 4667899999998
Q ss_pred cchhhhccCCCC-hhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 121 GTLDSLLCGSNS-RQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 121 ~~l~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.++......... ......+++.+.++| +|.+++++
T Consensus 294 pPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~ 329 (373)
T 3tm4_A 294 LPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT 329 (373)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEE
T ss_pred CCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 776542111111 123477888889988 45555555
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.9e-13 Score=100.33 Aligned_cols=100 Identities=12% Similarity=0.137 Sum_probs=80.4
Q ss_pred CCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccc-cCC----CCeeEE
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDE-FQT----GSFDSV 117 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~-~~~----~~fD~v 117 (207)
+.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++... .++.++++|+.+..+ ... ++||+|
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v 149 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 149 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence 3499999999999999999862 249999999999999999887532 478999999876421 111 689999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
++.... .....+++.+.++|+|||.+++..
T Consensus 150 ~~d~~~----------~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 150 VVDADK----------ENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EECSCS----------TTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCCH----------HHHHHHHHHHHHHcCCCeEEEEEC
Confidence 986442 456788999999999999999865
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=104.24 Aligned_cols=102 Identities=20% Similarity=0.216 Sum_probs=82.7
Q ss_pred hhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEE
Q 028547 42 LYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
....+. .+|||+|||+|.++.. ++ +..+|+++|+++.+++.+++++... .++.++++|+.+.. ++||+|+
T Consensus 191 ~~~~~~-~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----~~fD~Vi 263 (336)
T 2yx1_A 191 KKVSLN-DVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----VKGNRVI 263 (336)
T ss_dssp HHCCTT-CEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----CCEEEEE
T ss_pred HhcCCC-CEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----CCCcEEE
Confidence 333444 4999999999999999 87 4569999999999999999987632 47999999999873 7899999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
++.+.. ...+++.+.++|+|||.+++.+++..
T Consensus 264 ~dpP~~-----------~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 264 MNLPKF-----------AHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp ECCTTT-----------GGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred ECCcHh-----------HHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 875422 23678889999999999999887654
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-13 Score=103.77 Aligned_cols=79 Identities=11% Similarity=0.097 Sum_probs=61.1
Q ss_pred CCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccc--cccC---CCCeeEEE
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQM--DEFQ---TGSFDSVV 118 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~--~~~~---~~~fD~v~ 118 (207)
+.+|||+|||+|.++..++... ..+++++|+++.+++.++++.... .++.++++|+.+. .+++ +++||+|+
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~ 145 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM 145 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEE
Confidence 3499999999999998888763 249999999999999999987532 3489999997662 1233 26899999
Q ss_pred eCcchhhh
Q 028547 119 DKGTLDSL 126 (207)
Q Consensus 119 ~~~~l~~~ 126 (207)
++.+++..
T Consensus 146 ~npp~~~~ 153 (254)
T 2h00_A 146 CNPPFFAN 153 (254)
T ss_dssp ECCCCC--
T ss_pred ECCCCccC
Confidence 99776643
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=105.84 Aligned_cols=116 Identities=14% Similarity=0.127 Sum_probs=86.8
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeC
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
..++.+|||+|||+|..+..+++. +...|+++|+++.+++.+++++.. ..++.+.+.|+.++.....++||+|+++
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 344459999999999999999875 224899999999999999998763 3578999999988743346789999987
Q ss_pred cchhhhccCCCCh---------------hhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 121 GTLDSLLCGSNSR---------------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 121 ~~l~~~~~~~~~~---------------~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
.+........... .....+++.+.++|+|||.++++|++-
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 6533221100000 123478999999999999999988644
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.4e-13 Score=100.55 Aligned_cols=101 Identities=11% Similarity=0.082 Sum_probs=80.2
Q ss_pred CCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccC--C-CCceEEEeccccccc-c--CC--CCeeEE
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSN--R-PQLKYIKMDVRQMDE-F--QT--GSFDSV 117 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~--~-~~~~~~~~d~~~~~~-~--~~--~~fD~v 117 (207)
+.+|||+|||+|..+..+++... .+++++|+++.+++.+++++.. . .++.++.+|+.+..+ + .. ++||+|
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 34999999999999999998632 4999999999999999987642 1 368999999866311 1 22 789999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++.... .....+++++.++|+|||.+++...
T Consensus 153 ~~d~~~----------~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 153 FIDADK----------RNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EECSCG----------GGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred EECCCH----------HHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 976442 4567899999999999999998653
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-12 Score=93.45 Aligned_cols=102 Identities=16% Similarity=0.199 Sum_probs=74.2
Q ss_pred CCcEEEEcCCCchhhHHHHhc-CC---------CcEEEEeCCHHHHHHHHHHccCCCCceEE-Eecccccc-------cc
Q 028547 48 HQRILIVGCGNSAFSEGMVDD-GY---------EDVVNVDISSVVIEAMMKKYSNRPQLKYI-KMDVRQMD-------EF 109 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~-~~---------~~v~~~D~s~~~i~~~~~~~~~~~~~~~~-~~d~~~~~-------~~ 109 (207)
+.+|||+|||+|.++..+++. +. .+++++|+++.. ...++.++ ..|+.+.. .+
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------PLEGATFLCPADVTDPRTSQRILEVL 93 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------CCTTCEEECSCCTTSHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------cCCCCeEEEeccCCCHHHHHHHHHhc
Confidence 349999999999999999987 32 589999999831 12468888 88877642 12
Q ss_pred CCCCeeEEEeCcchhhhccCCCChhhH-------HHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 110 QTGSFDSVVDKGTLDSLLCGSNSRQNA-------TQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 110 ~~~~fD~v~~~~~l~~~~~~~~~~~~~-------~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+.++||+|++...++.... ...+. ..+++++.++|+|||.+++.++...
T Consensus 94 ~~~~fD~V~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 149 (196)
T 2nyu_A 94 PGRRADVILSDMAPNATGF---RDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS 149 (196)
T ss_dssp GGGCEEEEEECCCCCCCSC---HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG
T ss_pred CCCCCcEEEeCCCCCCCCC---cccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 3468999999765443100 00122 5789999999999999999887554
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-12 Score=105.44 Aligned_cols=115 Identities=13% Similarity=0.143 Sum_probs=86.1
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeC
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
.+++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++.. .. +.+++.|+.++.....++||+|+++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 3444599999999999999999763 24899999999999999998763 24 8899999888743346789999976
Q ss_pred cchhhhcc-C--C-----CCh-------hhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 121 GTLDSLLC-G--S-----NSR-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 121 ~~l~~~~~-~--~-----~~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
.+...... . + ... .....+++.+.++|+|||.+++++++-
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 55422110 0 0 011 124789999999999999999988643
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-12 Score=105.66 Aligned_cols=114 Identities=11% Similarity=0.144 Sum_probs=85.7
Q ss_pred CCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++.. ..++.+++.|+.++.....++||+|++..+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 44599999999999999999862 24899999999999999998762 357899999998873224578999998644
Q ss_pred hhhhc---cCC-----CCh-------hhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 123 LDSLL---CGS-----NSR-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 123 l~~~~---~~~-----~~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
..... ..+ ... .....+++++.++|||||.+++++++-
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 32211 000 011 124678999999999999999988643
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.6e-12 Score=103.83 Aligned_cols=117 Identities=14% Similarity=0.149 Sum_probs=86.4
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcC-C-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccc-cCCCCeeEEEe
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDG-Y-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDE-FQTGSFDSVVD 119 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~-~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~-~~~~~fD~v~~ 119 (207)
.+++.+|||+|||+|..+..+++.. . .+++++|+++..++.+++++.. ..++.+++.|+.+..+ ++.++||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 3444599999999999999998853 2 4899999999999999998763 2578999999988632 34478999997
Q ss_pred Ccchhhhcc-CCCC-------hh-------hHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 120 KGTLDSLLC-GSNS-------RQ-------NATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 120 ~~~l~~~~~-~~~~-------~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
..+...... ...+ .. ....+++++.++|+|||.+++++++..
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 544322211 0000 01 126789999999999999999987543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=103.26 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=82.1
Q ss_pred CcEEEEcCCCchhhHHHHhcCC------CcEEEEeCCHHHHHHHHHHccC-CCCceEEEeccccccccCCCCeeEEEeCc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY------EDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~------~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
.+|||+|||+|.++..+++... .+++|+|+++.+++.|+.+... ..++.+.++|..... ....||+|+++.
T Consensus 132 ~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~--~~~~fD~Ii~NP 209 (344)
T 2f8l_A 132 VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL--LVDPVDVVISDL 209 (344)
T ss_dssp EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC--CCCCEEEEEEEC
T ss_pred CEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCcc--ccCCccEEEECC
Confidence 4999999999999998887631 4899999999999999987641 136789999987752 467899999998
Q ss_pred chhhhccC----------CCChh-hHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLLCG----------SNSRQ-NATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~~~----------~~~~~-~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++.++... ..+.. ....+++.+.+.|+|||.++++..
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 87654100 00111 223689999999999999988873
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.3e-12 Score=97.72 Aligned_cols=88 Identities=14% Similarity=0.166 Sum_probs=71.8
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCee
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
+..+++.....++.+|||||||+|.++..+++.+. +|+++|+++.+++.+++++....++.++++|+.+. +++..+||
T Consensus 39 ~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~-~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~-~~~~~~fD 116 (295)
T 3gru_A 39 VNKAVESANLTKDDVVLEIGLGKGILTEELAKNAK-KVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKV-DLNKLDFN 116 (295)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTS-CGGGSCCS
T ss_pred HHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhccCCCeEEEECchhhC-CcccCCcc
Confidence 44455554444445999999999999999999854 99999999999999999876446899999999997 45667899
Q ss_pred EEEeCcchhh
Q 028547 116 SVVDKGTLDS 125 (207)
Q Consensus 116 ~v~~~~~l~~ 125 (207)
.|+++.+++.
T Consensus 117 ~Iv~NlPy~i 126 (295)
T 3gru_A 117 KVVANLPYQI 126 (295)
T ss_dssp EEEEECCGGG
T ss_pred EEEEeCcccc
Confidence 9999876653
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-12 Score=103.62 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=86.7
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccc-cCCCCeeEEEeCc
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDE-FQTGSFDSVVDKG 121 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~-~~~~~fD~v~~~~ 121 (207)
.+++.+|||+|||+|..+..+++... .+++++|+++..++.+++++... .++.+++.|+.+..+ ++.++||+|+++.
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 34445999999999999999998754 59999999999999999887632 357899999988632 4557899999865
Q ss_pred chhhhcc-CCCC-------hh-------hHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 122 TLDSLLC-GSNS-------RQ-------NATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 122 ~l~~~~~-~~~~-------~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+...... ...+ .. ....+++++.++|+|||.+++++++-
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 4432211 0001 11 23588999999999999999998644
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-12 Score=96.22 Aligned_cols=103 Identities=12% Similarity=0.123 Sum_probs=84.0
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccC-CCCceEEEeccccccccCCCCeeEEEeCc
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
+..+ .+|||||||+|-++..+.... ...|+++|+++.+++.+++++.. ..+.++...|..... +.+.||++++.-
T Consensus 130 i~~p-~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~--p~~~~DvaL~lk 206 (281)
T 3lcv_B 130 LPRP-NTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR--LDEPADVTLLLK 206 (281)
T ss_dssp SCCC-SEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC--CCSCCSEEEETT
T ss_pred cCCC-ceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC--CCCCcchHHHHH
Confidence 3444 499999999999999988874 36999999999999999999764 356788888888763 678899999999
Q ss_pred chhhhccCCCChhhH--HHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNA--TQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~--~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+++++ ++. ...+ ++.+.|+++|+++-..
T Consensus 207 ti~~L-------e~q~kg~g~-~ll~aL~~~~vvVSfp 236 (281)
T 3lcv_B 207 TLPCL-------ETQQRGSGW-EVIDIVNSPNIVVTFP 236 (281)
T ss_dssp CHHHH-------HHHSTTHHH-HHHHHSSCSEEEEEEE
T ss_pred HHHHh-------hhhhhHHHH-HHHHHhCCCCEEEecc
Confidence 99998 332 2444 8999999999987543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-12 Score=103.38 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=79.0
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+|||+|||+|.++..+++... .+++++|+ +.+++.+++ ..++.+..+|+.+ +++ .||+|++..++|++
T Consensus 195 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~--~~~--~~D~v~~~~vlh~~- 264 (358)
T 1zg3_A 195 ESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----NENLNFVGGDMFK--SIP--SADAVLLKWVLHDW- 264 (358)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----CSSEEEEECCTTT--CCC--CCSEEEEESCGGGS-
T ss_pred CEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----CCCcEEEeCccCC--CCC--CceEEEEcccccCC-
Confidence 4999999999999999998754 38999999 777765543 2469999999987 344 49999999999988
Q ss_pred cCCCChhhHHHHHHHHHHhcCC---CcEEEEEEe
Q 028547 128 CGSNSRQNATQMLKEVWRVLKD---KGVYILVTY 158 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~p---gG~~~~~~~ 158 (207)
+......++++++++|+| ||.+++.++
T Consensus 265 ----~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 265 ----NDEQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp ----CHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred ----CHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 333455999999999999 999999774
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-11 Score=96.19 Aligned_cols=86 Identities=20% Similarity=0.277 Sum_probs=64.5
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc--CCCCceEEEeccccccccCCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~ 113 (207)
+..+++.....++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++.. ...++.++++|+.+. ++ .+
T Consensus 31 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~-~~--~~ 106 (299)
T 2h1r_A 31 LDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKT-VF--PK 106 (299)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSS-CC--CC
T ss_pred HHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhC-Cc--cc
Confidence 34455544444445999999999999999998865 99999999999999998864 225899999999887 23 48
Q ss_pred eeEEEeCcchhh
Q 028547 114 FDSVVDKGTLDS 125 (207)
Q Consensus 114 fD~v~~~~~l~~ 125 (207)
||+|+++.+++.
T Consensus 107 ~D~Vv~n~py~~ 118 (299)
T 2h1r_A 107 FDVCTANIPYKI 118 (299)
T ss_dssp CSEEEEECCGGG
T ss_pred CCEEEEcCCccc
Confidence 999999877664
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.9e-12 Score=93.72 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=79.7
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+.+|||+|||+|.++..+. +...|+++|+++.+++.+++++.. ..+..+..+|..... +.++||+|++.-+++++
T Consensus 106 p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~--~~~~~DvvLllk~lh~L 181 (253)
T 3frh_A 106 PRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAP--PAEAGDLALIFKLLPLL 181 (253)
T ss_dssp CSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSC--CCCBCSEEEEESCHHHH
T ss_pred CCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCC--CCCCcchHHHHHHHHHh
Confidence 3499999999999999877 345999999999999999998753 367889999999873 55699999999888887
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+.......-++.+.|+++|+++-..
T Consensus 182 ------E~q~~~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 182 ------EREQAGSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp ------HHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred ------hhhchhhHHHHHHHhcCCCEEEEcC
Confidence 2223333448888999998877544
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-11 Score=100.03 Aligned_cols=99 Identities=13% Similarity=0.229 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEecccccc---ccCCCCeeEEEeC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMD---EFQTGSFDSVVDK 120 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~---~~~~~~fD~v~~~ 120 (207)
..+.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++... ..++.|+++|+.+.. ++..++||+|+++
T Consensus 285 ~~~~~VLDlgcG~G~~~~~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d 363 (433)
T 1uwv_A 285 QPEDRVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 (433)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred CCCCEEEECCCCCCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence 3334999999999999999999844 999999999999999998753 258999999998842 2456789999987
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.+.... ..+++.+.+ ++|+++++++
T Consensus 364 PPr~g~----------~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 364 PARAGA----------AGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp CCTTCC----------HHHHHHHHH-HCCSEEEEEE
T ss_pred CCCccH----------HHHHHHHHh-cCCCeEEEEE
Confidence 665432 235555544 6888887764
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-12 Score=92.55 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=72.1
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---CCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---QTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~fD~v~~~~~l~~ 125 (207)
.+|||+|||. + ++|+|+.+++.++++... ++.+.++|+.++ ++ ++++||+|++..++++
T Consensus 14 ~~vL~~~~g~--------------v-~vD~s~~ml~~a~~~~~~--~~~~~~~d~~~~-~~~~~~~~~fD~V~~~~~l~~ 75 (176)
T 2ld4_A 14 QFVAVVWDKS--------------S-PVEALKGLVDKLQALTGN--EGRVSVENIKQL-LQSAHKESSFDIILSGLVPGS 75 (176)
T ss_dssp SEEEEEECTT--------------S-CHHHHHHHHHHHHHHTTT--TSEEEEEEGGGG-GGGCCCSSCEEEEEECCSTTC
T ss_pred CEEEEecCCc--------------e-eeeCCHHHHHHHHHhccc--CcEEEEechhcC-ccccCCCCCEeEEEECChhhh
Confidence 4999999986 1 399999999999998754 589999999987 44 6889999999988887
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+ ..+...++++++++|||||.+++..
T Consensus 76 ~------~~~~~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 76 T------TLHSAEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp C------CCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred c------ccCHHHHHHHHHHHCCCCEEEEEEc
Confidence 5 1345889999999999999999965
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.27 E-value=7.2e-11 Score=90.02 Aligned_cols=86 Identities=19% Similarity=0.364 Sum_probs=68.5
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccC----C
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ----T 111 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~----~ 111 (207)
+..+++.....++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++....+++++++|+.+.. ++ .
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~-~~~~~~~ 95 (255)
T 3tqs_A 18 LQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECD-NLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFD-FSSVKTD 95 (255)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSS-EEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCC-GGGSCCS
T ss_pred HHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCC-HHHhccC
Confidence 34555555444455999999999999999999874 999999999999999999876568999999999973 32 3
Q ss_pred CCeeEEEeCcchh
Q 028547 112 GSFDSVVDKGTLD 124 (207)
Q Consensus 112 ~~fD~v~~~~~l~ 124 (207)
++|| |+++.++.
T Consensus 96 ~~~~-vv~NlPY~ 107 (255)
T 3tqs_A 96 KPLR-VVGNLPYN 107 (255)
T ss_dssp SCEE-EEEECCHH
T ss_pred CCeE-EEecCCcc
Confidence 5688 77775554
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-10 Score=88.66 Aligned_cols=84 Identities=15% Similarity=0.308 Sum_probs=65.0
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCC-CCeeE
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT-GSFDS 116 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~fD~ 116 (207)
.++......++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++....++.++++|+.+. +++. ..| .
T Consensus 21 ~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~-~~~~~~~~-~ 97 (244)
T 1qam_A 21 KIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQF-KFPKNQSY-K 97 (244)
T ss_dssp HHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGC-CCCSSCCC-E
T ss_pred HHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCC-eEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhC-CcccCCCe-E
Confidence 344433333445999999999999999999874 99999999999999999886556899999999987 3443 445 5
Q ss_pred EEeCcchh
Q 028547 117 VVDKGTLD 124 (207)
Q Consensus 117 v~~~~~l~ 124 (207)
|+++.+++
T Consensus 98 vv~nlPy~ 105 (244)
T 1qam_A 98 IFGNIPYN 105 (244)
T ss_dssp EEEECCGG
T ss_pred EEEeCCcc
Confidence 66665554
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.24 E-value=9.1e-13 Score=100.11 Aligned_cols=114 Identities=16% Similarity=0.212 Sum_probs=82.1
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccC-CCC
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ-TGS 113 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~ 113 (207)
.+..+++.....++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++++.....++.++++|+.+. +++ .++
T Consensus 17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~-~~~~~~~ 94 (245)
T 1yub_A 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQF-QFPNKQR 94 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTT-TCCCSSE
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhc-CcccCCC
Confidence 34455555444444599999999999999999987 499999999999998888765445789999999987 344 367
Q ss_pred eeEEEeCcchhhhccCCCChhhHHH----------HH----HHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQ----------ML----KEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~----------~l----~~~~~~L~pgG~~~~~~ 157 (207)
| .|+++.+++.. ...... .+ +.+.++|+|||.+.+..
T Consensus 95 f-~vv~n~Py~~~------~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 95 Y-KIVGNIPYHLS------TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp E-EEEEECCSSSC------HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred c-EEEEeCCcccc------HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 8 67776544321 111112 22 66889999999877654
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-11 Score=97.23 Aligned_cols=99 Identities=12% Similarity=0.270 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccc-cCC-------------
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDE-FQT------------- 111 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~-~~~------------- 111 (207)
+.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++++... .++.|+++|+.+..+ ...
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~ 292 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 292 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGG
T ss_pred CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccc
Confidence 348999999999999999885 459999999999999999987632 589999999887522 121
Q ss_pred -CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 112 -GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 112 -~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
.+||+|++..+... +..++.+.|+++|.++++++..
T Consensus 293 ~~~fD~Vv~dPPr~g-------------~~~~~~~~l~~~g~ivyvsc~p 329 (369)
T 3bt7_A 293 SYQCETIFVDPPRSG-------------LDSETEKMVQAYPRILYISCNP 329 (369)
T ss_dssp GCCEEEEEECCCTTC-------------CCHHHHHHHTTSSEEEEEESCH
T ss_pred cCCCCEEEECcCccc-------------cHHHHHHHHhCCCEEEEEECCH
Confidence 37999997755332 2345666777899988877544
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=100.86 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=83.9
Q ss_pred cCHHHHHHhhCC-CCCCcEEEEcCCCchhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccC
Q 028547 34 PSLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ 110 (207)
Q Consensus 34 ~~~~~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~ 110 (207)
+.+.+.+...+. ..+.+|||+|||+|.++..+++. ...+++|+|+++.+++.+ .++.++++|+.+.. .
T Consensus 25 ~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------~~~~~~~~D~~~~~--~ 95 (421)
T 2ih2_A 25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAEGILADFLLWE--P 95 (421)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEEEEESCGGGCC--C
T ss_pred HHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------CCCcEEeCChhhcC--c
Confidence 334444444433 23349999999999999999875 235999999999887666 36889999998873 4
Q ss_pred CCCeeEEEeCcchhhhccCC-----CCh-----------------hhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 111 TGSFDSVVDKGTLDSLLCGS-----NSR-----------------QNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~-----~~~-----------------~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
.++||+|+++.++....... ... +....+++.+.++|+|||.+.++...
T Consensus 96 ~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 96 GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 57899999987765431100 001 12236799999999999999998754
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.4e-11 Score=95.97 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=73.4
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++... .. +.|+++|+.+.. +. +||+|+++.+....
T Consensus 292 ~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~--~~-~fD~Vv~dPPr~g~ 366 (425)
T 2jjq_A 292 EKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVS--VK-GFDTVIVDPPRAGL 366 (425)
T ss_dssp SEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCC--CT-TCSEEEECCCTTCS
T ss_pred CEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcC--cc-CCCEEEEcCCccch
Confidence 4999999999999999999855 999999999999999998752 23 899999999873 22 89999987653321
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
...+++.+. .|+|+|+++++.
T Consensus 367 ---------~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 367 ---------HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp ---------CHHHHHHHH-HHCCSEEEEEES
T ss_pred ---------HHHHHHHHH-hcCCCcEEEEEC
Confidence 123444444 489999988753
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-10 Score=92.81 Aligned_cols=108 Identities=11% Similarity=0.119 Sum_probs=84.2
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC---------------------------------------CcEEEEeCCHHHHHHH
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY---------------------------------------EDVVNVDISSVVIEAM 86 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~---------------------------------------~~v~~~D~s~~~i~~~ 86 (207)
++...|||++||+|.++++++..+. .+++|+|+++.+++.+
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 3445999999999999988876432 2599999999999999
Q ss_pred HHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCC--CcEEEEEEe
Q 028547 87 MKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKD--KGVYILVTY 158 (207)
Q Consensus 87 ~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~p--gG~~~~~~~ 158 (207)
++++... ..+.|.+.|+.+.. . ..+||+|+++.++..- .........+++.+.+.|++ ||.+++.+.
T Consensus 273 r~Na~~~gl~~~I~~~~~D~~~l~-~-~~~fD~Iv~NPPYG~r---l~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 273 RKNAREVGLEDVVKLKQMRLQDFK-T-NKINGVLISNPPYGER---LLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp HHHHHHTTCTTTEEEEECCGGGCC-C-CCCSCEEEECCCCTTT---TSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHcCCCCceEEEECChHHCC-c-cCCcCEEEECCchhhc---cCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 9987632 35899999999983 2 3589999999887532 22345677788888888876 888888874
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.4e-11 Score=90.64 Aligned_cols=86 Identities=13% Similarity=0.184 Sum_probs=71.2
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCC-CC
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT-GS 113 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~ 113 (207)
.+..+++.....++ +|||+|||+|.++..+++.+. +|+++|+++.+++.+++++.. .+++++++|+.+.. ++. ..
T Consensus 35 i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~-~~v~vi~~D~l~~~-~~~~~~ 110 (271)
T 3fut_A 35 HLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG-LPVRLVFQDALLYP-WEEVPQ 110 (271)
T ss_dssp HHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT-SSEEEEESCGGGSC-GGGSCT
T ss_pred HHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC-CCEEEEECChhhCC-hhhccC
Confidence 34556666656667 999999999999999999975 999999999999999998874 58999999999873 443 36
Q ss_pred eeEEEeCcchh
Q 028547 114 FDSVVDKGTLD 124 (207)
Q Consensus 114 fD~v~~~~~l~ 124 (207)
+|.|+++.+++
T Consensus 111 ~~~iv~NlPy~ 121 (271)
T 3fut_A 111 GSLLVANLPYH 121 (271)
T ss_dssp TEEEEEEECSS
T ss_pred ccEEEecCccc
Confidence 89999987665
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.18 E-value=7.9e-11 Score=96.87 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=87.3
Q ss_pred CHHHHH-HhhCCCCCCcEEEEcCCCchhhHHHHhc--------------CCCcEEEEeCCHHHHHHHHHHcc--CCC--C
Q 028547 35 SLAPLI-KLYVPSHHQRILIVGCGNSAFSEGMVDD--------------GYEDVVNVDISSVVIEAMMKKYS--NRP--Q 95 (207)
Q Consensus 35 ~~~~~l-~~~~~~~~~~vLdiG~G~G~~~~~l~~~--------------~~~~v~~~D~s~~~i~~~~~~~~--~~~--~ 95 (207)
.+...+ +...+..+.+|||+|||+|.++..+++. ...+++|+|+++.+++.|+.++. ... +
T Consensus 158 ~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~ 237 (445)
T 2okc_A 158 PLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 237 (445)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCC
Confidence 334333 3333444459999999999999888764 12489999999999999988754 222 6
Q ss_pred ceEEEeccccccccCCCCeeEEEeCcchhhhccCCC----------ChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 96 LKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSN----------SRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 96 ~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~----------~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
..+.++|..... ...+||+|+++.++........ .......+++.+.+.|+|||.+.++..
T Consensus 238 ~~i~~gD~l~~~--~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 238 SPIVCEDSLEKE--PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CSEEECCTTTSC--CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEeeCCCCCCc--ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 789999988763 2348999999988875421110 011235789999999999999988773
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=94.19 Aligned_cols=108 Identities=14% Similarity=0.181 Sum_probs=80.4
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC---------------------------------------CcEEEEeCCHHHHHHH
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY---------------------------------------EDVVNVDISSVVIEAM 86 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~---------------------------------------~~v~~~D~s~~~i~~~ 86 (207)
.++.+|||++||+|.++++++..+. .+++|+|+++.+++.+
T Consensus 200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A 279 (393)
T 3k0b_A 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA 279 (393)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence 3445999999999999988876532 2599999999999999
Q ss_pred HHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCC--CcEEEEEEe
Q 028547 87 MKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKD--KGVYILVTY 158 (207)
Q Consensus 87 ~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~p--gG~~~~~~~ 158 (207)
++++... .++.+.+.|+.+.. ...+||+|+++.++..- .........+.+.+.+.|++ ||.+++.+.
T Consensus 280 r~Na~~~gl~~~I~~~~~D~~~~~--~~~~fD~Iv~NPPYg~r---l~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 351 (393)
T 3k0b_A 280 KQNAVEAGLGDLITFRQLQVADFQ--TEDEYGVVVANPPYGER---LEDEEAVRQLYREMGIVYKRMPTWSVYVLTS 351 (393)
T ss_dssp HHHHHHTTCTTCSEEEECCGGGCC--CCCCSCEEEECCCCCCS---HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred HHHHHHcCCCCceEEEECChHhCC--CCCCCCEEEECCCCccc---cCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9987632 35999999999983 34589999999876421 00113455666666666665 888888774
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-10 Score=92.26 Aligned_cols=108 Identities=14% Similarity=0.175 Sum_probs=81.8
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC---------------------------------------CcEEEEeCCHHHHHHH
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY---------------------------------------EDVVNVDISSVVIEAM 86 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~---------------------------------------~~v~~~D~s~~~i~~~ 86 (207)
.++.+|||++||+|.+++.++..+. .+|+|+|+++.+++.|
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 3345999999999999998876531 3699999999999999
Q ss_pred HHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCC--CcEEEEEEe
Q 028547 87 MKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKD--KGVYILVTY 158 (207)
Q Consensus 87 ~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~p--gG~~~~~~~ 158 (207)
++++... .++.|.+.|+.+.. ...+||+|+++.++..- .........+.+.+.+.|++ |+.+++.+.
T Consensus 274 r~Na~~~gl~~~i~~~~~D~~~l~--~~~~~D~Iv~NPPyg~r---l~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 345 (385)
T 3ldu_A 274 RENAEIAGVDEYIEFNVGDATQFK--SEDEFGFIITNPPYGER---LEDKDSVKQLYKELGYAFRKLKNWSYYLITS 345 (385)
T ss_dssp HHHHHHHTCGGGEEEEECCGGGCC--CSCBSCEEEECCCCCCS---HHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred HHHHHHcCCCCceEEEECChhhcC--cCCCCcEEEECCCCcCc---cCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence 9987632 36899999999973 34689999999886421 01124566677777777776 888888774
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=6.2e-11 Score=95.46 Aligned_cols=99 Identities=17% Similarity=0.126 Sum_probs=78.4
Q ss_pred CCcEEEEcCCCchhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccCC--CC--ceEEEeccccccc-cCCCCeeEEEeC
Q 028547 48 HQRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNR--PQ--LKYIKMDVRQMDE-FQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~~--~~--~~~~~~d~~~~~~-~~~~~fD~v~~~ 120 (207)
+.+|||++||+|.++..++.. |..+|+++|+++.+++.+++++... .+ +.++++|+.+... ...+.||+|++.
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD 132 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD 132 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence 349999999999999999985 4358999999999999999998732 34 8999999988632 224679999987
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. +. ....+++.+.+.|++||+++++.
T Consensus 133 P-~g----------~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 133 P-FG----------TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp C-SS----------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-Cc----------CHHHHHHHHHHHhCCCCEEEEEe
Confidence 5 21 12458888999999999777654
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.13 E-value=8.8e-10 Score=86.29 Aligned_cols=115 Identities=7% Similarity=-0.001 Sum_probs=81.0
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccC--CCCeeEEE
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQ--TGSFDSVV 118 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~--~~~fD~v~ 118 (207)
.+++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++... .++.+++.|+.+..+.. ..+||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 344459999999999999999885 2359999999999999999987632 57999999998863211 15799999
Q ss_pred eCcchhhhccCC---C-------Ch-------hhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 119 DKGTLDSLLCGS---N-------SR-------QNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 119 ~~~~l~~~~~~~---~-------~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+..+........ . +. .....+++.+.++++ ||.+++++++-
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 865543221100 0 00 122456777777776 99999988654
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=7.8e-11 Score=94.73 Aligned_cols=98 Identities=14% Similarity=0.059 Sum_probs=76.9
Q ss_pred CCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCC-----------------CCceEEEecccccccc
Q 028547 48 HQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNR-----------------PQLKYIKMDVRQMDEF 109 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~-----------------~~~~~~~~d~~~~~~~ 109 (207)
+.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++... .++.++++|+.+....
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 349999999999999999987 4458999999999999999886522 2488999999886322
Q ss_pred CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 110 QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 110 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
..+.||+|+.... . ....+++.+.+.|++||.++++
T Consensus 128 ~~~~fD~I~lDP~-~----------~~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 128 RHRYFHFIDLDPF-G----------SPMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp STTCEEEEEECCS-S----------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCCEEEeCCC-C----------CHHHHHHHHHHhcCCCCEEEEE
Confidence 2467999996542 2 1256788889999999987765
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-10 Score=88.95 Aligned_cols=100 Identities=10% Similarity=0.032 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCC------chhhHHHHhc-C-CCcEEEEeCCHHHHHHHHHHccCCCCceE-EEeccccccccCCCCeeEE
Q 028547 47 HHQRILIVGCGN------SAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNRPQLKY-IKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 47 ~~~~vLdiG~G~------G~~~~~l~~~-~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~fD~v 117 (207)
++.+|||+|||+ |. ..+++. + ..+|+|+|+++. . .++.+ +++|+.+. ++ .++||+|
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v---~~v~~~i~gD~~~~-~~-~~~fD~V 127 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V---SDADSTLIGDCATV-HT-ANKWDLI 127 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B---CSSSEEEESCGGGC-CC-SSCEEEE
T ss_pred CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C---CCCEEEEECccccC-Cc-cCcccEE
Confidence 334999999955 65 333433 3 248999999997 1 37889 99999987 33 3689999
Q ss_pred EeCcchhhh----ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 118 VDKGTLDSL----LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 118 ~~~~~l~~~----~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+++...+.. ............+++.+.++|+|||.|++..+...
T Consensus 128 vsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~ 175 (290)
T 2xyq_A 128 ISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS 175 (290)
T ss_dssp EECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred EEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 997432211 01111234567899999999999999999776543
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.2e-10 Score=86.86 Aligned_cols=111 Identities=19% Similarity=0.352 Sum_probs=87.8
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHcc-------CCCCceEEEeccccccccCCCCee
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS-------NRPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
.++++++||-||.|.|..+.++++.. ..+++.+|+++..++.+++.++ +.++++++..|+.+......++||
T Consensus 80 ~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yD 159 (294)
T 3o4f_A 80 AHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFD 159 (294)
T ss_dssp HSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred hCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCC
Confidence 34555699999999999999999874 3699999999999999998764 237899999999997555678999
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|+.... +.. +....-....+++.+.+.|+|||+++...
T Consensus 160 vIi~D~~-dp~--~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 160 VIISDCT-DPI--GPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EEEESCC-CCC--CTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEeCC-CcC--CCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 9997632 211 11122356788999999999999999864
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-09 Score=83.27 Aligned_cols=84 Identities=12% Similarity=0.240 Sum_probs=63.8
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCC--CCe
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT--GSF 114 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~f 114 (207)
..+++.....++.+|||+|||+|.++..+++.+..+++++|+++.+++.++++ ...+++++++|+.+. +++. +.+
T Consensus 21 ~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~--~~~~v~~i~~D~~~~-~~~~~~~~~ 97 (249)
T 3ftd_A 21 KKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI--GDERLEVINEDASKF-PFCSLGKEL 97 (249)
T ss_dssp HHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS--CCTTEEEECSCTTTC-CGGGSCSSE
T ss_pred HHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc--cCCCeEEEEcchhhC-ChhHccCCc
Confidence 44555544444459999999999999999998645999999999999999887 336899999999987 3332 233
Q ss_pred eEEEeCcchh
Q 028547 115 DSVVDKGTLD 124 (207)
Q Consensus 115 D~v~~~~~l~ 124 (207)
.|+++.+++
T Consensus 98 -~vv~NlPy~ 106 (249)
T 3ftd_A 98 -KVVGNLPYN 106 (249)
T ss_dssp -EEEEECCTT
T ss_pred -EEEEECchh
Confidence 666665543
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.7e-11 Score=90.13 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=75.4
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCC
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (207)
.+.++.+....++..+|||||||+|.+++.+++. +...++++|+.-++............++.+...++... .+..++
T Consensus 62 KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~-~l~~~~ 140 (277)
T 3evf_A 62 KLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIH-RLEPVK 140 (277)
T ss_dssp HHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTT-TSCCCC
T ss_pred HHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceeh-hcCCCC
Confidence 3555555544455559999999999999998876 34578888887432000000000001455555554333 456789
Q ss_pred eeEEEeCcchhhhccCCC--ChhhHHHHHHHHHHhcCCC-cEEEEEEeC
Q 028547 114 FDSVVDKGTLDSLLCGSN--SRQNATQMLKEVWRVLKDK-GVYILVTYG 159 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~L~pg-G~~~~~~~~ 159 (207)
||+|++....+ - +.. .......+++.+.++|+|| |.|++-.|.
T Consensus 141 ~DlVlsD~apn-s--G~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 141 CDTLLCDIGES-S--SSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CSEEEECCCCC-C--SCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred ccEEEecCccC-c--CchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 99999986554 1 110 0111123478889999999 999998887
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.4e-10 Score=94.39 Aligned_cols=124 Identities=10% Similarity=0.021 Sum_probs=87.1
Q ss_pred CHHHH-HHhhCCCCCCcEEEEcCCCchhhHHHHhc----C---------------CCcEEEEeCCHHHHHHHHHHcc--C
Q 028547 35 SLAPL-IKLYVPSHHQRILIVGCGNSAFSEGMVDD----G---------------YEDVVNVDISSVVIEAMMKKYS--N 92 (207)
Q Consensus 35 ~~~~~-l~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~---------------~~~v~~~D~s~~~i~~~~~~~~--~ 92 (207)
.+..+ ++...+....+|+|.|||+|.++..+++. . ...++|+|+++.++..|+.++. .
T Consensus 156 ~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~g 235 (541)
T 2ar0_A 156 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 235 (541)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhC
Confidence 34444 33333444459999999999999877653 1 1379999999999999988754 2
Q ss_pred CCC-----ceEEEeccccccccCCCCeeEEEeCcchhhhccCC-------CChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 93 RPQ-----LKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGS-------NSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 93 ~~~-----~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~-------~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
..+ ..+.++|..........+||+|+++.++....... ........+++.+.+.|+|||.+.++..
T Consensus 236 i~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 236 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 233 78899998775333457899999998876531110 0012234789999999999999888763
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-09 Score=83.15 Aligned_cols=85 Identities=12% Similarity=0.220 Sum_probs=64.2
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCc----EEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYED----VVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT 111 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~----v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 111 (207)
+..+++.....++.+|||||||+|.++..+++.+. . |+++|+++.+++.++++. ..++.++++|+.+. +++.
T Consensus 31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~--~~~v~~i~~D~~~~-~~~~ 106 (279)
T 3uzu_A 31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF--GELLELHAGDALTF-DFGS 106 (279)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH--GGGEEEEESCGGGC-CGGG
T ss_pred HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc--CCCcEEEECChhcC-ChhH
Confidence 44555555444445999999999999999998765 5 999999999999999884 35899999999987 2332
Q ss_pred C------CeeEEEeCcchh
Q 028547 112 G------SFDSVVDKGTLD 124 (207)
Q Consensus 112 ~------~fD~v~~~~~l~ 124 (207)
- ....|+++.++.
T Consensus 107 ~~~~~~~~~~~vv~NlPY~ 125 (279)
T 3uzu_A 107 IARPGDEPSLRIIGNLPYN 125 (279)
T ss_dssp GSCSSSSCCEEEEEECCHH
T ss_pred hcccccCCceEEEEccCcc
Confidence 1 234677765544
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-10 Score=87.35 Aligned_cols=100 Identities=11% Similarity=0.018 Sum_probs=71.3
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCH-------HHHHHHHHHccCC---CCceEEEeccccccc-cCC--CCee
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISS-------VVIEAMMKKYSNR---PQLKYIKMDVRQMDE-FQT--GSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~-------~~i~~~~~~~~~~---~~~~~~~~d~~~~~~-~~~--~~fD 115 (207)
.+|||+|||+|.++..++..+. +|+++|+++ .+++.++++.... .+++++++|+.+..+ +++ ++||
T Consensus 85 ~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~fD 163 (258)
T 2r6z_A 85 PTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKPD 163 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCCS
T ss_pred CeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCcc
Confidence 4999999999999999999876 999999999 9999988765421 349999999988532 333 6899
Q ss_pred EEEeCcchhhhccCC-------------CChhhHHHHHHHHHHhcCC
Q 028547 116 SVVDKGTLDSLLCGS-------------NSRQNATQMLKEVWRVLKD 149 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~-------------~~~~~~~~~l~~~~~~L~p 149 (207)
+|+++.++.+..... ....+...+++.+.++.+.
T Consensus 164 ~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~ 210 (258)
T 2r6z_A 164 IVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK 210 (258)
T ss_dssp EEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS
T ss_pred EEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc
Confidence 999987665421000 0112456667777777643
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=7.9e-10 Score=84.14 Aligned_cols=84 Identities=15% Similarity=0.206 Sum_probs=62.7
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCc--EEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCC---
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYED--VVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQT--- 111 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~--v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~--- 111 (207)
..+++.....++.+|||+|||+|.++. +.. +. + |+++|+++.+++.+++++....+++++++|+.+. +++.
T Consensus 11 ~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~-~~~~~~~ 86 (252)
T 1qyr_A 11 DSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTF-NFGELAE 86 (252)
T ss_dssp HHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGC-CHHHHHH
T ss_pred HHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhC-CHHHhhc
Confidence 445555444444599999999999999 654 43 6 9999999999999999876545899999999986 2321
Q ss_pred --CCeeEEEeCcchh
Q 028547 112 --GSFDSVVDKGTLD 124 (207)
Q Consensus 112 --~~fD~v~~~~~l~ 124 (207)
+..+.|+++.++.
T Consensus 87 ~~~~~~~vvsNlPY~ 101 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYN 101 (252)
T ss_dssp HHTSCEEEEEECCTT
T ss_pred ccCCceEEEECCCCC
Confidence 2347888876644
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-09 Score=84.38 Aligned_cols=87 Identities=16% Similarity=0.272 Sum_probs=67.6
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccc-cC--
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDE-FQ-- 110 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~-~~-- 110 (207)
+..+++.+..+++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++... .++.++++|+.++.. ..
T Consensus 15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~ 94 (301)
T 1m6y_A 15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL 94 (301)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhc
Confidence 4556665555555599999999999999999874 249999999999999999987643 589999999887621 11
Q ss_pred -CCCeeEEEeCcc
Q 028547 111 -TGSFDSVVDKGT 122 (207)
Q Consensus 111 -~~~fD~v~~~~~ 122 (207)
..+||.|++...
T Consensus 95 g~~~~D~Vl~D~g 107 (301)
T 1m6y_A 95 GIEKVDGILMDLG 107 (301)
T ss_dssp TCSCEEEEEEECS
T ss_pred CCCCCCEEEEcCc
Confidence 258999997543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.4e-09 Score=90.36 Aligned_cols=110 Identities=12% Similarity=0.082 Sum_probs=78.5
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcC-------------------------------------------CCcEEEEeCCHHH
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDG-------------------------------------------YEDVVNVDISSVV 82 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~-------------------------------------------~~~v~~~D~s~~~ 82 (207)
+...+|||++||+|.+++.++..+ ...++|+|+++.+
T Consensus 189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a 268 (703)
T 3v97_A 189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV 268 (703)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence 344599999999999998877642 1379999999999
Q ss_pred HHHHHHHccCC---CCceEEEeccccccc-cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHH---HHhcCCCcEEEE
Q 028547 83 IEAMMKKYSNR---PQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEV---WRVLKDKGVYIL 155 (207)
Q Consensus 83 i~~~~~~~~~~---~~~~~~~~d~~~~~~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~---~~~L~pgG~~~~ 155 (207)
++.|+.++... ..+.|.+.|+.+..+ ...++||+|+++.++..- .........+.+.+ .+.+.|||.+++
T Consensus 269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~R---lg~~~~l~~ly~~l~~~lk~~~~g~~~~i 345 (703)
T 3v97_A 269 IQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGER---LDSEPALIALHSLLGRIMKNQFGGWNLSL 345 (703)
T ss_dssp HHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC------CCHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCcccc---ccchhHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 99999987632 248999999998732 223389999999887521 11223444455544 445568999998
Q ss_pred EEe
Q 028547 156 VTY 158 (207)
Q Consensus 156 ~~~ 158 (207)
.+.
T Consensus 346 lt~ 348 (703)
T 3v97_A 346 FSA 348 (703)
T ss_dssp EES
T ss_pred EeC
Confidence 873
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-10 Score=86.96 Aligned_cols=121 Identities=12% Similarity=0.026 Sum_probs=74.7
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCC
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (207)
.+.++.+.+.-++..+|||||||+|.+++.+++. +...++|+|+...+...+...-....++.+...++... .++..+
T Consensus 78 KL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~-~l~~~~ 156 (282)
T 3gcz_A 78 KLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVF-NMEVIP 156 (282)
T ss_dssp HHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGG-GSCCCC
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchh-hcCCCC
Confidence 3556666655455559999999999999998865 44588999997642111100000012333333222212 346688
Q ss_pred eeEEEeCcchhhhccCCC--ChhhHHHHHHHHHHhcCCC--cEEEEEEeC
Q 028547 114 FDSVVDKGTLDSLLCGSN--SRQNATQMLKEVWRVLKDK--GVYILVTYG 159 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~L~pg--G~~~~~~~~ 159 (207)
+|+|+|....+ - +.. .......+++-+.++|+|| |.|++-.|.
T Consensus 157 ~DvVLSDmApn-s--G~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 157 GDTLLCDIGES-S--PSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CSEEEECCCCC-C--SCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred cCEEEecCccC-C--CChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 99999987655 1 111 1112223577778999999 999998887
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.90 E-value=7.5e-10 Score=84.36 Aligned_cols=76 Identities=12% Similarity=-0.029 Sum_probs=58.3
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-------C---C-CCceEEEeccccccccCCCCeeEE
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------N---R-PQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-------~---~-~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
.+|||+|||+|..+..++..+. +|+++|+++.+...++.++. . . .+++++++|..+..+...++||+|
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV 168 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEE
Confidence 4999999999999999999877 89999999976555444321 1 1 368899999988633223479999
Q ss_pred EeCcchhh
Q 028547 118 VDKGTLDS 125 (207)
Q Consensus 118 ~~~~~l~~ 125 (207)
++..++..
T Consensus 169 ~lDP~y~~ 176 (258)
T 2oyr_A 169 YLDPMFPH 176 (258)
T ss_dssp EECCCCCC
T ss_pred EEcCCCCC
Confidence 99877653
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-09 Score=86.85 Aligned_cols=76 Identities=7% Similarity=-0.010 Sum_probs=63.1
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC----CCCceEEEecccccccc-CCCCeeEEEeCcc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN----RPQLKYIKMDVRQMDEF-QTGSFDSVVDKGT 122 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~----~~~~~~~~~d~~~~~~~-~~~~fD~v~~~~~ 122 (207)
+.+|||+|||+|..+..+++.+. +|+++|+++.+++.+++++.. ..+++++++|+.+..+. ..++||+|+++.+
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDPP 172 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPA 172 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECCE
T ss_pred CCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECCC
Confidence 34999999999999999998865 999999999999999998762 25799999999985222 2358999999866
Q ss_pred hh
Q 028547 123 LD 124 (207)
Q Consensus 123 l~ 124 (207)
..
T Consensus 173 rr 174 (410)
T 3ll7_A 173 RR 174 (410)
T ss_dssp EC
T ss_pred Cc
Confidence 54
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.86 E-value=7.5e-09 Score=71.03 Aligned_cols=100 Identities=16% Similarity=0.060 Sum_probs=69.5
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCc-hhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNS-AFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G-~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (207)
+.+.+........ +|||+|||+| ..+..+++ .++ +|+++|+++.++. |++.|+.+...-.-+.
T Consensus 25 LaeYI~~~~~~~~-rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~-------------~v~dDiF~P~~~~Y~~ 89 (153)
T 2k4m_A 25 LAVYIIRCSGPGT-RVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG-------------IVRDDITSPRMEIYRG 89 (153)
T ss_dssp HHHHHHHHSCSSS-EEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT-------------EECCCSSSCCHHHHTT
T ss_pred HHHHHHhcCCCCC-cEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc-------------eEEccCCCCcccccCC
Confidence 4455554444445 9999999999 69999997 777 9999999985443 8889998863111158
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
||+|.+..+- .++...+.++++.+. .-+++..++.+.
T Consensus 90 ~DLIYsirPP----------~El~~~i~~lA~~v~--adliI~pL~~E~ 126 (153)
T 2k4m_A 90 AALIYSIRPP----------AEIHSSLMRVADAVG--ARLIIKPLTGED 126 (153)
T ss_dssp EEEEEEESCC----------TTTHHHHHHHHHHHT--CEEEEECBTTBC
T ss_pred cCEEEEcCCC----------HHHHHHHHHHHHHcC--CCEEEEcCCCCc
Confidence 9999864432 344556666665544 677777766654
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.8e-09 Score=87.56 Aligned_cols=127 Identities=12% Similarity=-0.015 Sum_probs=84.7
Q ss_pred cCccCHHHHHHh-hCCCCCCcEEEEcCCCchhhHHHHhcC----------------CCcEEEEeCCHHHHHHHHHHcc--
Q 028547 31 QKYPSLAPLIKL-YVPSHHQRILIVGCGNSAFSEGMVDDG----------------YEDVVNVDISSVVIEAMMKKYS-- 91 (207)
Q Consensus 31 ~~~~~~~~~l~~-~~~~~~~~vLdiG~G~G~~~~~l~~~~----------------~~~v~~~D~s~~~i~~~~~~~~-- 91 (207)
.+.+.+..++.. ..+... +|+|.+||+|.++..+++.- ...++|+|+++.++..|+.++.
T Consensus 228 yTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~ 306 (544)
T 3khk_A 228 YTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIR 306 (544)
T ss_dssp CCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHT
T ss_pred eCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHh
Confidence 333444444443 334444 99999999999988765420 1379999999999999988754
Q ss_pred CC-CCceEEEeccccccccCCCCeeEEEeCcchhhhcc----------------------CCCChhhHHHHHHHHHHhcC
Q 028547 92 NR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC----------------------GSNSRQNATQMLKEVWRVLK 148 (207)
Q Consensus 92 ~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~----------------------~~~~~~~~~~~l~~~~~~L~ 148 (207)
.. .++.+.++|..........+||+|+++.++..-.. ........-.+++.+.+.|+
T Consensus 307 gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk 386 (544)
T 3khk_A 307 GIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLA 386 (544)
T ss_dssp TCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEE
T ss_pred CCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhc
Confidence 21 23334677776653345679999999988863100 00011112368999999999
Q ss_pred CCcEEEEEEe
Q 028547 149 DKGVYILVTY 158 (207)
Q Consensus 149 pgG~~~~~~~ 158 (207)
|||.+.++..
T Consensus 387 ~gGr~aiVlP 396 (544)
T 3khk_A 387 PTGSMALLLA 396 (544)
T ss_dssp EEEEEEEEEE
T ss_pred cCceEEEEec
Confidence 9999888764
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-08 Score=83.39 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=81.4
Q ss_pred CCCcEEEEcCCCchhhHHHHhc----CCCcEEEEeCCHHHHHHHHHHcc--CC--CCceEEEecccccc--ccCCCCeeE
Q 028547 47 HHQRILIVGCGNSAFSEGMVDD----GYEDVVNVDISSVVIEAMMKKYS--NR--PQLKYIKMDVRQMD--EFQTGSFDS 116 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~----~~~~v~~~D~s~~~i~~~~~~~~--~~--~~~~~~~~d~~~~~--~~~~~~fD~ 116 (207)
...+|+|.+||+|.++..+.+. +...++|+|+++.++..|+.++. .. .++.+.++|..... ......||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 3349999999999999888775 12489999999999999988754 22 35678888887651 235678999
Q ss_pred EEeCcchhhhccCC----------------CChhhHHHHHHHHHHhcC-CCcEEEEEEe
Q 028547 117 VVDKGTLDSLLCGS----------------NSRQNATQMLKEVWRVLK-DKGVYILVTY 158 (207)
Q Consensus 117 v~~~~~l~~~~~~~----------------~~~~~~~~~l~~~~~~L~-pgG~~~~~~~ 158 (207)
|+++.++..-.... ......-.+++.+.+.|+ +||.+.++..
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 99998875311000 000112358999999999 9999888774
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.5e-08 Score=77.93 Aligned_cols=115 Identities=14% Similarity=0.044 Sum_probs=78.1
Q ss_pred CcEEEEcCCCchhhHHHHhc-----------------CC-CcEEEEeCC-----------HHHHHHHHHHccCCCCceEE
Q 028547 49 QRILIVGCGNSAFSEGMVDD-----------------GY-EDVVNVDIS-----------SVVIEAMMKKYSNRPQLKYI 99 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~-----------------~~-~~v~~~D~s-----------~~~i~~~~~~~~~~~~~~~~ 99 (207)
.+|+|+||++|.++..+... .+ -+|+..|+- +...+.+++......+..|.
T Consensus 54 ~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f~ 133 (384)
T 2efj_A 54 FKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLI 133 (384)
T ss_dssp EEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEEE
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceEE
Confidence 48999999999988877664 12 267777876 43444333332221234666
Q ss_pred Eeccccc--cccCCCCeeEEEeCcchhhhccCCCC--------------------------------hhhHHHHHHHHHH
Q 028547 100 KMDVRQM--DEFQTGSFDSVVDKGTLDSLLCGSNS--------------------------------RQNATQMLKEVWR 145 (207)
Q Consensus 100 ~~d~~~~--~~~~~~~fD~v~~~~~l~~~~~~~~~--------------------------------~~~~~~~l~~~~~ 145 (207)
.+....+ ..++.+++|+|+++..+||+.-.+.. ..|...+|+..++
T Consensus 134 ~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~ 213 (384)
T 2efj_A 134 GAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSE 213 (384)
T ss_dssp EECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655543 34789999999999999998533211 1245566888899
Q ss_pred hcCCCcEEEEEEeCCccc
Q 028547 146 VLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 146 ~L~pgG~~~~~~~~~~~~ 163 (207)
.|+|||.+++...+.+..
T Consensus 214 eL~pGG~mvl~~~gr~~~ 231 (384)
T 2efj_A 214 ELISRGRMLLTFICKEDE 231 (384)
T ss_dssp HEEEEEEEEEEEECCCTT
T ss_pred HhccCCeEEEEEecCCCc
Confidence 999999999998766543
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.5e-08 Score=83.52 Aligned_cols=111 Identities=13% Similarity=0.021 Sum_probs=78.1
Q ss_pred CCcEEEEcCCCchhhHHHHhcC----CCcEEEEeCCHHHHHHH--HHHccC------CCCceEEEeccccccccCCCCee
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG----YEDVVNVDISSVVIEAM--MKKYSN------RPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~----~~~v~~~D~s~~~i~~~--~~~~~~------~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
+.+|||.|||+|.++..+++.. ..+++|+|+++.+++.| +.++.. .....+...|+..........||
T Consensus 322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD 401 (878)
T 3s1s_A 322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS 401 (878)
T ss_dssp TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence 3499999999999999988763 24899999999999998 444332 12235566666664334567899
Q ss_pred EEEeCcchhhhccC----------------------CCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 116 SVVDKGTLDSLLCG----------------------SNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 116 ~v~~~~~l~~~~~~----------------------~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+|+++.++...... .........+++.+.+.|++||.+.++..
T Consensus 402 VVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 402 VVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99999988421000 00011245678899999999999998874
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.6e-08 Score=72.12 Aligned_cols=106 Identities=11% Similarity=0.030 Sum_probs=74.5
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-----CCCceEEEecccccc----
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-----RPQLKYIKMDVRQMD---- 107 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-----~~~~~~~~~d~~~~~---- 107 (207)
.+++...+.+. ++|||+||| .-+.++++...++|+.+|.+++..+.+++++.. ..++.++.+|+.+..
T Consensus 21 ~~~L~~~l~~a-~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~ 97 (202)
T 3cvo_A 21 AEALRMAYEEA-EVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGH 97 (202)
T ss_dssp HHHHHHHHHHC-SEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGC
T ss_pred HHHHHHHhhCC-CEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccc
Confidence 44554444444 499999984 677777775225999999999999999988763 236889999865420
Q ss_pred ----------c--------c-CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 108 ----------E--------F-QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 108 ----------~--------~-~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+ . ..++||+|+..+- .....+..+.+.|+|||++++-.
T Consensus 98 p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~------------k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 98 PVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR------------FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp BSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS------------SHHHHHHHHHHHCSSCEEEEETT
T ss_pred cccchhhhhHHHHhhhhhccccCCCCCEEEEeCC------------CchhHHHHHHHhcCCCeEEEEeC
Confidence 1 1 1368999996542 22366667789999999997643
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-08 Score=80.19 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=82.4
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC----------CCCceEEEeccccccc---cCCCC
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN----------RPQLKYIKMDVRQMDE---FQTGS 113 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~----------~~~~~~~~~d~~~~~~---~~~~~ 113 (207)
++++||-||.|.|..+.++++....+++.||+++..++.+++.++. .++++++..|+.+... -..+.
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~ 284 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE 284 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence 3469999999999999999987667999999999999999997652 1357899999987521 13568
Q ss_pred eeEEEeCcchhhhcc---CCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLLC---GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~~---~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
||+|+....-..... +.........+++.+.+.|+|||+++...
T Consensus 285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 999997532111100 11122456788999999999999998744
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.76 E-value=9.9e-09 Score=87.22 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=71.7
Q ss_pred CcEEEEcCCCchhhHHHHhc----C----------CCcEEEEeCCHHHHHHHHHHccC-C-CCceEEEeccccccccC--
Q 028547 49 QRILIVGCGNSAFSEGMVDD----G----------YEDVVNVDISSVVIEAMMKKYSN-R-PQLKYIKMDVRQMDEFQ-- 110 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~----~----------~~~v~~~D~s~~~i~~~~~~~~~-~-~~~~~~~~d~~~~~~~~-- 110 (207)
+.|||+|||+|.++...+.. + ..+|++||.++.++..++.+..+ . ..+.++.+|+.+.. .+
T Consensus 411 ~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~-lp~~ 489 (745)
T 3ua3_A 411 VVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLP-GIAK 489 (745)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHH-HHHH
T ss_pred cEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcc-cccc
Confidence 48999999999997433221 1 13999999999887666655432 2 46999999999983 43
Q ss_pred ---CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 111 ---TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 111 ---~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
.+++|+|++-.+ ..++ ..+-....+..+.+.|+|||+++=
T Consensus 490 ~~~~ekVDIIVSElm-Gsfl----~nEL~pe~Ld~v~r~Lkp~Gi~iP 532 (745)
T 3ua3_A 490 DRGFEQPDIIVSELL-GSFG----DNELSPECLDGVTGFLKPTTISIP 532 (745)
T ss_dssp HTTCCCCSEEEECCC-BTTB----GGGSHHHHHHTTGGGSCTTCEEES
T ss_pred cCCCCcccEEEEecc-cccc----chhccHHHHHHHHHhCCCCcEEEC
Confidence 689999998633 2221 123445677778899999998653
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=7.5e-08 Score=76.64 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=86.7
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC--------CCCceEEEeccccccccCCCCe
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--------RPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~f 114 (207)
.++++.+|||+++|.|.=+..+++.+. ..++++|+++.-+..+++++.. ..++.+...|...+.....+.|
T Consensus 145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f 224 (359)
T 4fzv_A 145 GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY 224 (359)
T ss_dssp CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence 345555999999999999988888765 4799999999988888776541 1467888889888744567899
Q ss_pred eEEEeCcchhhh--c-cCCCC-------h-------hhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 115 DSVVDKGTLDSL--L-CGSNS-------R-------QNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 115 D~v~~~~~l~~~--~-~~~~~-------~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|.|++..+...- . ....+ . .....+|..+.+.|||||.++.+|++-.
T Consensus 225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 999987654331 0 11110 0 1346788889999999999999997543
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-08 Score=86.14 Aligned_cols=100 Identities=18% Similarity=0.256 Sum_probs=68.8
Q ss_pred CcEEEEcCCCchhhHHHHh---cCCC--cEEEEeCCHHHHHHHHHHccC-C-CCceEEEeccccccccCCCCeeEEEeCc
Q 028547 49 QRILIVGCGNSAFSEGMVD---DGYE--DVVNVDISSVVIEAMMKKYSN-R-PQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~---~~~~--~v~~~D~s~~~i~~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
..|+|+|||+|.+....++ .+.. +|++||.++.+....+....+ . ..|+++++|+++.. .++++|+|++-
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~--LPEKVDIIVSE- 435 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWV--APEKADIIVSE- 435 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCC--CSSCEEEEECC-
T ss_pred cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceecc--CCcccCEEEEE-
Confidence 3799999999999554444 3322 789999998665444333222 1 57999999999984 34789999975
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
.+.+++.. +.....+....++|||||+++=
T Consensus 436 wMG~fLl~----E~mlevL~Ardr~LKPgGimiP 465 (637)
T 4gqb_A 436 LLGSFADN----ELSPECLDGAQHFLKDDGVSIP 465 (637)
T ss_dssp CCBTTBGG----GCHHHHHHHHGGGEEEEEEEES
T ss_pred cCcccccc----cCCHHHHHHHHHhcCCCcEEcc
Confidence 23333222 2334677788899999998753
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-08 Score=78.40 Aligned_cols=123 Identities=13% Similarity=0.067 Sum_probs=73.2
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEeccccccccCCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~ 113 (207)
+.++.+..+.++..+|||+||++|.+++.+++. +...|+|+|+.......... ... ..++.....++.-. .+....
T Consensus 70 L~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~~iv~~~~~~di~-~l~~~~ 147 (300)
T 3eld_A 70 IRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGWNIVKFKDKSNVF-TMPTEP 147 (300)
T ss_dssp HHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCTT-TSCCCC
T ss_pred HHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCCceEEeecCceee-ecCCCC
Confidence 444554433344559999999999999999985 44588999987532100000 000 01232232222111 235678
Q ss_pred eeEEEeCcchhhhccCCC--ChhhHHHHHHHHHHhcCCC-cEEEEEEeC--Cccc
Q 028547 114 FDSVVDKGTLDSLLCGSN--SRQNATQMLKEVWRVLKDK-GVYILVTYG--APIY 163 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~L~pg-G~~~~~~~~--~~~~ 163 (207)
+|+|++....+ - +.. .......+++-+.++|+|| |.|++-.|. ++..
T Consensus 148 ~DlVlsD~APn-s--G~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~ 199 (300)
T 3eld_A 148 SDTLLCDIGES-S--SNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDV 199 (300)
T ss_dssp CSEEEECCCCC-C--SSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHH
T ss_pred cCEEeecCcCC-C--CCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccH
Confidence 99999986554 1 111 1112234477778999999 999998887 5543
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-07 Score=74.36 Aligned_cols=113 Identities=16% Similarity=0.156 Sum_probs=73.7
Q ss_pred CcEEEEcCCCchhhHHHHhc------------C---C-CcEEEEeCCHHHHHHHHHHccCC--------------CCceE
Q 028547 49 QRILIVGCGNSAFSEGMVDD------------G---Y-EDVVNVDISSVVIEAMMKKYSNR--------------PQLKY 98 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~------------~---~-~~v~~~D~s~~~i~~~~~~~~~~--------------~~~~~ 98 (207)
.+|+|+||++|.++..+... + + -+|+..|+-.......=+.++.. .+..|
T Consensus 54 ~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~f 133 (374)
T 3b5i_A 54 FTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYF 133 (374)
T ss_dssp EEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCSE
T ss_pred eEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCceE
Confidence 48999999999988876331 1 2 26777786554332222222210 01234
Q ss_pred EEeccccc--cccCCCCeeEEEeCcchhhhccCCCC-------------------------------hhhHHHHHHHHHH
Q 028547 99 IKMDVRQM--DEFQTGSFDSVVDKGTLDSLLCGSNS-------------------------------RQNATQMLKEVWR 145 (207)
Q Consensus 99 ~~~d~~~~--~~~~~~~fD~v~~~~~l~~~~~~~~~-------------------------------~~~~~~~l~~~~~ 145 (207)
..+....+ ..++.+++|+|+++.++||+.-.+.. ..|...+|+..++
T Consensus 134 ~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~ 213 (374)
T 3b5i_A 134 VAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAA 213 (374)
T ss_dssp EEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333332 24789999999999999998422210 1277888999999
Q ss_pred hcCCCcEEEEEEeCCc
Q 028547 146 VLKDKGVYILVTYGAP 161 (207)
Q Consensus 146 ~L~pgG~~~~~~~~~~ 161 (207)
.|+|||.+++...+.+
T Consensus 214 eL~pGG~mvl~~~gr~ 229 (374)
T 3b5i_A 214 EVKRGGAMFLVCLGRT 229 (374)
T ss_dssp HEEEEEEEEEEEEECC
T ss_pred HhCCCCEEEEEEecCC
Confidence 9999999999887554
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.2e-08 Score=75.41 Aligned_cols=114 Identities=11% Similarity=0.040 Sum_probs=73.0
Q ss_pred CcEEEEcCCCchhhHHHHhc-------CC------CcEEEEeCCH---HHHH-----------HHHHHccC---------
Q 028547 49 QRILIVGCGNSAFSEGMVDD-------GY------EDVVNVDISS---VVIE-----------AMMKKYSN--------- 92 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~-------~~------~~v~~~D~s~---~~i~-----------~~~~~~~~--------- 92 (207)
.+|||+|+|+|..+..+++. .+ .+++++|..+ +.+. .+++.+..
T Consensus 62 ~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~~ 141 (257)
T 2qy6_A 62 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH 141 (257)
T ss_dssp EEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEEE
T ss_pred CEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccchh
Confidence 49999999999988776542 22 3899999876 4433 33333211
Q ss_pred -------CCCceEEEeccccccccCC----CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 93 -------RPQLKYIKMDVRQMDEFQT----GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 93 -------~~~~~~~~~d~~~~~~~~~----~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
..+++++.+|+.+..+... ..||+|+..+ +....+++-....+++.+++.|+|||+|+ +|+..
T Consensus 142 r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~----fsp~~~p~lw~~~~l~~l~~~L~pGG~l~--tysaa 215 (257)
T 2qy6_A 142 RLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG----FAPAKNPDMWTQNLFNAMARLARPGGTLA--TFTSA 215 (257)
T ss_dssp EEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS----SCTTTCGGGCCHHHHHHHHHHEEEEEEEE--ESCCB
T ss_pred heeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC----CCcccChhhcCHHHHHHHHHHcCCCcEEE--EEeCC
Confidence 1357788999988533222 2799999653 21111122235789999999999999987 45554
Q ss_pred ccccccc
Q 028547 162 IYRLGML 168 (207)
Q Consensus 162 ~~~~~~~ 168 (207)
....+.+
T Consensus 216 ~~vrr~L 222 (257)
T 2qy6_A 216 GFVRRGL 222 (257)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4433333
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-07 Score=74.76 Aligned_cols=114 Identities=12% Similarity=0.094 Sum_probs=81.7
Q ss_pred CcEEEEcCCCchhhHHHHhc---------------C-C-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccc--
Q 028547 49 QRILIVGCGNSAFSEGMVDD---------------G-Y-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQM-- 106 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~---------------~-~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~-- 106 (207)
-+|+|+||++|..+..+... . + -+|+..|........+-+.++.. .+..|..+....+
T Consensus 53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~ 132 (359)
T 1m6e_X 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence 38999999999888766554 1 2 27788898776666665555421 1335555544443
Q ss_pred cccCCCCeeEEEeCcchhhhccCCCC--------------------------hhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 107 DEFQTGSFDSVVDKGTLDSLLCGSNS--------------------------RQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 107 ~~~~~~~fD~v~~~~~l~~~~~~~~~--------------------------~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
..++.+++|+|+++..+||+.-.+.. .+|...+|+..++.|+|||.+++...+.
T Consensus 133 rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr 212 (359)
T 1m6e_X 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR 212 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred ccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 34789999999999999998532211 2478888999999999999999988755
Q ss_pred cc
Q 028547 161 PI 162 (207)
Q Consensus 161 ~~ 162 (207)
+.
T Consensus 213 ~~ 214 (359)
T 1m6e_X 213 RS 214 (359)
T ss_dssp SS
T ss_pred CC
Confidence 44
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.55 E-value=4.4e-07 Score=69.33 Aligned_cols=82 Identities=12% Similarity=0.237 Sum_probs=66.8
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc----cCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE----FQT 111 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~----~~~ 111 (207)
+.+.++.+..+++..+||.+||.|..+..+++.+. .|+|+|.++.+++.+++ +.. .++.+++.++.++.. ...
T Consensus 11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~g-~VigiD~Dp~Ai~~A~~-L~~-~rv~lv~~~f~~l~~~L~~~g~ 87 (285)
T 1wg8_A 11 YQEALDLLAVRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKG-LHL-PGLTVVQGNFRHLKRHLAALGV 87 (285)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHH-TCC-TTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCCC-EEEEEeCCHHHHHHHHh-hcc-CCEEEEECCcchHHHHHHHcCC
Confidence 45677766555555999999999999999999844 99999999999999999 766 689999999988632 123
Q ss_pred CCeeEEEeC
Q 028547 112 GSFDSVVDK 120 (207)
Q Consensus 112 ~~fD~v~~~ 120 (207)
+++|.|++.
T Consensus 88 ~~vDgIL~D 96 (285)
T 1wg8_A 88 ERVDGILAD 96 (285)
T ss_dssp SCEEEEEEE
T ss_pred CCcCEEEeC
Confidence 579999975
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.9e-07 Score=68.33 Aligned_cols=115 Identities=12% Similarity=0.029 Sum_probs=70.1
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCC-CCc---eEEEe-cccccccc
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNR-PQL---KYIKM-DVRQMDEF 109 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~-~~~---~~~~~-d~~~~~~~ 109 (207)
+.++.+..+-+++.+|||+||+.|.+++.+++.. ...|.|.++..+. . . .-.... .++ .|.++ |+.+.
T Consensus 62 L~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~-~P~~~~~~Gv~~i~~~~G~Df~~~--- 135 (269)
T 2px2_A 62 LRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-E-EPMLMQSYGWNIVTMKSGVDVFYK--- 135 (269)
T ss_dssp HHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-C-CCCCCCSTTGGGEEEECSCCGGGS---
T ss_pred HHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-c-CCCcccCCCceEEEeeccCCccCC---
Confidence 5555555555655699999999999999998862 1233444443321 0 0 001111 233 34445 88875
Q ss_pred CCCCeeEEEeCcchhhhccCCCChhhHH---HHHHHHHHhcCCCc-EEEEEEeCC
Q 028547 110 QTGSFDSVVDKGTLDSLLCGSNSRQNAT---QMLKEVWRVLKDKG-VYILVTYGA 160 (207)
Q Consensus 110 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~---~~l~~~~~~L~pgG-~~~~~~~~~ 160 (207)
...++|+|+|...-. ++.. ..|.. .+++-+.++|+||| .|++-.|.+
T Consensus 136 ~~~~~DvVLSDMAPn---SG~~-~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 136 PSEISDTLLCDIGES---SPSA-EIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp CCCCCSEEEECCCCC---CSCH-HHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred CCCCCCEEEeCCCCC---CCcc-HHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 346799999975432 2211 11222 25666779999999 999988875
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-06 Score=67.59 Aligned_cols=103 Identities=13% Similarity=0.079 Sum_probs=74.8
Q ss_pred CCcEEEEcCCCchhhHHHHhc----C--CCcEEEEeCCHH--------------------------HHHHHHHHccC---
Q 028547 48 HQRILIVGCGNSAFSEGMVDD----G--YEDVVNVDISSV--------------------------VIEAMMKKYSN--- 92 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~----~--~~~v~~~D~s~~--------------------------~i~~~~~~~~~--- 92 (207)
++.|||+|+..|.-+..++.. + ..+++++|..+. .++.+++++..
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 349999999999988877653 1 248999996421 24556666552
Q ss_pred -CCCceEEEeccccccc-cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 93 -RPQLKYIKMDVRQMDE-FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 93 -~~~~~~~~~d~~~~~~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
..+++++.+++.+..+ .+.++||+|+...-.. ......++.+.+.|+|||++++-.+.
T Consensus 187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y---------~~~~~~Le~~~p~L~pGGiIv~DD~~ 246 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY---------ESTWDTLTNLYPKVSVGGYVIVDDYM 246 (282)
T ss_dssp CSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH---------HHHHHHHHHHGGGEEEEEEEEESSCT
T ss_pred CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc---------ccHHHHHHHHHhhcCCCEEEEEcCCC
Confidence 2579999999987533 3457899999764321 45568899999999999999987653
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-06 Score=68.43 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=55.8
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+++.+|||+||++|.++..+++.+. .|++||+.+-. . .+...+++.+++.|+.... ....++|+|+|.....
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~-~----~l~~~~~V~~~~~d~~~~~-~~~~~~D~vvsDm~~~ 281 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMA-Q----SLMDTGQVTWLREDGFKFR-PTRSNISWMVCDMVEK 281 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCC-H----HHHTTTCEEEECSCTTTCC-CCSSCEEEEEECCSSC
T ss_pred CCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcC-h----hhccCCCeEEEeCcccccc-CCCCCcCEEEEcCCCC
Confidence 3445999999999999999999986 99999986521 1 1223368999999999884 3457899999986544
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.4e-06 Score=63.20 Aligned_cols=120 Identities=14% Similarity=0.106 Sum_probs=78.0
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHH-ccCCCCceEEEe-ccccccccCC
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKK-YSNRPQLKYIKM-DVRQMDEFQT 111 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~-~~~~~~~~~~~~-d~~~~~~~~~ 111 (207)
.+.++.+.+.-++..+|||+||++|.+++.++.. +...|+++|+...-.+.-+-. ......+.|... |+.... .
T Consensus 66 KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~---~ 142 (267)
T 3p8z_A 66 KLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLP---P 142 (267)
T ss_dssp HHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCC---C
T ss_pred HHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecC---C
Confidence 3556666665555569999999999999977776 446899999876321000000 001257889998 987663 3
Q ss_pred CCeeEEEeCcchhhhccCCCChhhH---HHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNA---TQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~---~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
.++|.|+|...- +..++..+. ...|+-+.++|++ |.|.+-.+++..
T Consensus 143 ~~~DtllcDIge----Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 143 EKCDTLLCDIGE----SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp CCCSEEEECCCC----CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred ccccEEEEecCC----CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 679999987321 111222233 3356666899998 899998876655
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.35 E-value=9.3e-07 Score=67.46 Aligned_cols=117 Identities=14% Similarity=0.121 Sum_probs=74.9
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHH--HHccCCCCceEEEe-ccccccccCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMM--KKYSNRPQLKYIKM-DVRQMDEFQT 111 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~--~~~~~~~~~~~~~~-d~~~~~~~~~ 111 (207)
+.++.+...-+...+||||||++|.++..++.. +...|+|+|+...--+.-+ +.+ ....+.|... |+..+. .
T Consensus 83 L~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql-~w~lV~~~~~~Dv~~l~---~ 158 (321)
T 3lkz_A 83 LRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSY-GWNIVTMKSGVDVFYRP---S 158 (321)
T ss_dssp HHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBT-TGGGEEEECSCCTTSSC---C
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhc-CCcceEEEeccCHhhCC---C
Confidence 555666555455559999999999999977776 4468999998763110000 000 1123667765 776663 3
Q ss_pred CCeeEEEeCcchhhhccCCCChhhH---HHHHHHHHHhcCCC-cEEEEEEeCC
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNA---TQMLKEVWRVLKDK-GVYILVTYGA 160 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~---~~~l~~~~~~L~pg-G~~~~~~~~~ 160 (207)
.++|+|+|.-. . +...+..+. ...|+-+.++|+++ |.|.+-.+++
T Consensus 159 ~~~D~ivcDig-e---Ss~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 159 ECCDTLLCDIG-E---SSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp CCCSEEEECCC-C---CCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred CCCCEEEEECc-c---CCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 67999998733 2 222222233 33666668999998 9999988777
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.9e-06 Score=68.84 Aligned_cols=130 Identities=11% Similarity=0.099 Sum_probs=83.0
Q ss_pred eecCccCHHHHHH-hhCCCCCCcEEEEcCCCchhhHHHHhc----C----------CCcEEEEeCCHHHHHHHHHHcc--
Q 028547 29 WYQKYPSLAPLIK-LYVPSHHQRILIVGCGNSAFSEGMVDD----G----------YEDVVNVDISSVVIEAMMKKYS-- 91 (207)
Q Consensus 29 ~~~~~~~~~~~l~-~~~~~~~~~vLdiG~G~G~~~~~l~~~----~----------~~~v~~~D~s~~~i~~~~~~~~-- 91 (207)
.+.+.+.+..++- ...+..+.+|+|.+||+|.++..+.+. . ...++|+|+++.+...|+-++.
T Consensus 198 qfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lh 277 (530)
T 3ufb_A 198 EFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLH 277 (530)
T ss_dssp CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHH
T ss_pred eECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhc
Confidence 3444444555443 444444459999999999998776542 1 1369999999999998887643
Q ss_pred CCCCceEEEeccccc---cccCCCCeeEEEeCcchhhhc---------cCCCChhhHHHHHHHHHHhcC-------CCcE
Q 028547 92 NRPQLKYIKMDVRQM---DEFQTGSFDSVVDKGTLDSLL---------CGSNSRQNATQMLKEVWRVLK-------DKGV 152 (207)
Q Consensus 92 ~~~~~~~~~~d~~~~---~~~~~~~fD~v~~~~~l~~~~---------~~~~~~~~~~~~l~~~~~~L~-------pgG~ 152 (207)
......+..+|.... .......||+|+++.++..-. ...........+++.+.+.|+ +||.
T Consensus 278 g~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr 357 (530)
T 3ufb_A 278 GLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGR 357 (530)
T ss_dssp TCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCE
T ss_pred CCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCce
Confidence 223456677776653 112345799999999884210 000111233457778888886 6999
Q ss_pred EEEEEe
Q 028547 153 YILVTY 158 (207)
Q Consensus 153 ~~~~~~ 158 (207)
+.++..
T Consensus 358 ~avVlP 363 (530)
T 3ufb_A 358 AAVVVP 363 (530)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 888763
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.8e-05 Score=58.71 Aligned_cols=98 Identities=9% Similarity=0.031 Sum_probs=67.5
Q ss_pred CcEEEEcC------CCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeC
Q 028547 49 QRILIVGC------GNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 49 ~~vLdiG~------G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
.+|||+|+ .+|.. .+.+.+. +.++++|+.+ +....+ .++++|..+.. ...+||+|++.
T Consensus 111 mrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~---------~~sda~-~~IqGD~~~~~--~~~k~DLVISD 176 (344)
T 3r24_A 111 MRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLND---------FVSDAD-STLIGDCATVH--TANKWDLIISD 176 (344)
T ss_dssp CEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSC---------CBCSSS-EEEESCGGGEE--ESSCEEEEEEC
T ss_pred CEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcc---------cccCCC-eEEEccccccc--cCCCCCEEEec
Confidence 49999996 56763 3333333 2899999977 222223 56999987753 45889999998
Q ss_pred cchhhhccCC------CChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 121 GTLDSLLCGS------NSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 121 ~~l~~~~~~~------~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
..-.. ++. ....-.+.+++-+.+.|+|||.|++-.|.+..
T Consensus 177 MAPNt--TG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg 222 (344)
T 3r24_A 177 MYDPR--TKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 222 (344)
T ss_dssp CCCTT--SCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred CCCCc--CCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence 55432 221 12335777888889999999999999886665
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.06 E-value=4.7e-06 Score=63.73 Aligned_cols=104 Identities=7% Similarity=-0.033 Sum_probs=82.3
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc---cCCCCeeEEEeCcchhhh
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~v~~~~~l~~~ 126 (207)
.+||+=+|||.++.++...+ .+++.+|.++..++..++++....++++++.|...... -+...||+|++..++..-
T Consensus 94 ~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k 172 (283)
T 2oo3_A 94 STLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERK 172 (283)
T ss_dssp SSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCST
T ss_pred CceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCC
Confidence 78999999999999999965 69999999999999999998766679999999766311 134579999998877632
Q ss_pred ccCCCChhhHHHHHHHHHH--hcCCCcEEEEEEeCCc
Q 028547 127 LCGSNSRQNATQMLKEVWR--VLKDKGVYILVTYGAP 161 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~--~L~pgG~~~~~~~~~~ 161 (207)
.+...+++.+.+ .+.|+|++++-.....
T Consensus 173 -------~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 173 -------EEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp -------THHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred -------cHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 466777777655 5678999998764333
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1.6e-05 Score=61.74 Aligned_cols=54 Identities=9% Similarity=0.115 Sum_probs=44.2
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~ 91 (207)
+..++..... ++..|||++||+|..+..+++.|. +++|+|+++.+++.+++++.
T Consensus 225 ~~~~i~~~~~-~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~ 278 (297)
T 2zig_A 225 AERLVRMFSF-VGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFA 278 (297)
T ss_dssp HHHHHHHHCC-TTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHH
Confidence 3344444443 334999999999999999999876 99999999999999999875
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.77 E-value=5.4e-05 Score=59.24 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=65.4
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--- 109 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~--- 109 (207)
.+.+.++.+..+++..++|..||.|..+..+++. +. ..|+|+|.++.+++.++ ++. ..++.+++.++.++...
T Consensus 45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~-~~Rv~lv~~nF~~l~~~L~~ 122 (347)
T 3tka_A 45 LLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID-DPRFSIIHGPFSALGEYVAE 122 (347)
T ss_dssp TTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC-CTTEEEEESCGGGHHHHHHH
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc-CCcEEEEeCCHHHHHHHHHh
Confidence 4566777766565569999999999999999886 33 58999999999999994 553 36899999998886221
Q ss_pred -C-CCCeeEEEeCcc
Q 028547 110 -Q-TGSFDSVVDKGT 122 (207)
Q Consensus 110 -~-~~~fD~v~~~~~ 122 (207)
. .+++|.|+...-
T Consensus 123 ~g~~~~vDgILfDLG 137 (347)
T 3tka_A 123 RDLIGKIDGILLDLG 137 (347)
T ss_dssp TTCTTCEEEEEEECS
T ss_pred cCCCCcccEEEECCc
Confidence 1 136999987633
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00029 Score=54.60 Aligned_cols=113 Identities=18% Similarity=0.194 Sum_probs=71.7
Q ss_pred cEEEEcCCCchhhHHHH----hcCC-C--cEEEEeCCH------------HHHHHHHHHccC--C--CCceEEEeccccc
Q 028547 50 RILIVGCGNSAFSEGMV----DDGY-E--DVVNVDISS------------VVIEAMMKKYSN--R--PQLKYIKMDVRQM 106 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~----~~~~-~--~v~~~D~s~------------~~i~~~~~~~~~--~--~~~~~~~~d~~~~ 106 (207)
+|||+|.|+|....... +.+. . +++.+|..+ +..+........ . ..+.+..+|+.+.
T Consensus 99 ~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~~ 178 (308)
T 3vyw_A 99 RILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARKR 178 (308)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHHH
T ss_pred EEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHHH
Confidence 89999999998654322 2222 1 566776421 122222222221 1 2356777888875
Q ss_pred cc-cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcccccccc
Q 028547 107 DE-FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLGML 168 (207)
Q Consensus 107 ~~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~ 168 (207)
.+ +....||+|+ ++.+.+..+++-....+++.++++++|||+|. ||+..+...+-+
T Consensus 179 l~~l~~~~~Da~f----lDgFsP~kNPeLWs~e~f~~l~~~~~pgg~la--TYtaag~VRR~L 235 (308)
T 3vyw_A 179 IKEVENFKADAVF----HDAFSPYKNPELWTLDFLSLIKERIDEKGYWV--SYSSSLSVRKSL 235 (308)
T ss_dssp GGGCCSCCEEEEE----ECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEE--ESCCCHHHHHHH
T ss_pred HhhhcccceeEEE----eCCCCcccCcccCCHHHHHHHHHHhCCCcEEE--EEeCcHHHHHHH
Confidence 33 3445799999 45554555666677899999999999999886 776666655555
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00033 Score=55.09 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=61.4
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+|+|+.||.|.++..+...|+..+.++|+++.+++..+.++.... +.|+.+..+.....+|+|+...+...++
T Consensus 12 ~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~-----~~Di~~~~~~~~~~~D~l~~gpPCQ~fS 85 (327)
T 2c7p_A 12 LRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP-----EGDITQVNEKTIPDHDILCAGFPCQAFS 85 (327)
T ss_dssp CEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC-----BSCGGGSCGGGSCCCSEEEEECCCTTTC
T ss_pred CcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC-----cCCHHHcCHhhCCCCCEEEECCCCCCcc
Confidence 3899999999999999999998788999999999999999986532 6888886433334699999998888775
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00016 Score=57.41 Aligned_cols=71 Identities=11% Similarity=0.049 Sum_probs=56.0
Q ss_pred CHHHHHHhhCCC------CCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc
Q 028547 35 SLAPLIKLYVPS------HHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM 106 (207)
Q Consensus 35 ~~~~~l~~~~~~------~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~ 106 (207)
.+..+++..... .+..|||||.|.|.++..+++.. ..+++++|+++..+...++.+ ...++.++.+|+.++
T Consensus 40 i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 40 VYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EGSPLQILKRDPYDW 117 (353)
T ss_dssp HHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TTSSCEEECSCTTCH
T ss_pred HHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cCCCEEEEECCccch
Confidence 445566554322 12489999999999999999862 458999999999999998877 346899999999765
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00044 Score=55.41 Aligned_cols=75 Identities=13% Similarity=0.251 Sum_probs=62.3
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc--c-----CCCCeeEEEeCcc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--F-----QTGSFDSVVDKGT 122 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~--~-----~~~~fD~v~~~~~ 122 (207)
+|+|+.||.|.++..+.+.|+..+.++|+++.+++..+.++. +..+++.|+.+... + ....+|+|+...+
T Consensus 4 ~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~---~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 4 NVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP---RSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp EEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT---TSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred eEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC---CCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 899999999999999999998678899999999999998874 56788899988632 1 2467999999888
Q ss_pred hhhhc
Q 028547 123 LDSLL 127 (207)
Q Consensus 123 l~~~~ 127 (207)
...++
T Consensus 81 CQ~fS 85 (376)
T 3g7u_A 81 CQGFS 85 (376)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 76654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=2.1e-05 Score=76.46 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=49.6
Q ss_pred CcEEEEcCCCchhhHHHHhc-C-----CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGNSAFSEGMVDD-G-----YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~-~-----~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
.+|||+|.|+|..+..+.+. + +.+++..|+|+...+.+++++... ++.....|..+..++...+||+|++.++
T Consensus 1242 ~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~-di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1242 MKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL-HVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH-TEEEECCCSSCCCC-----CCEEEEECC
T ss_pred ceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc-ccccccccccccccCCCCceeEEEEccc
Confidence 49999999999776654432 1 247889999987776666655321 1222112322211234567999999999
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|.. .+....+.+++++|+|||.+++..
T Consensus 1321 l~~t-------~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1321 LATL-------GDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp ---------------------------CCEEEEEE
T ss_pred cccc-------ccHHHHHHHHHHhcCCCcEEEEEe
Confidence 9866 678889999999999999988764
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00023 Score=56.40 Aligned_cols=75 Identities=15% Similarity=0.260 Sum_probs=58.0
Q ss_pred cEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc--cCCCCeeEEEeCcchhh
Q 028547 50 RILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~v~~~~~l~~ 125 (207)
+|+|+.||.|.++..+...| +..+.++|+++.+++..+.++. +..+++.|+.+..+ ++...+|+++...+.+.
T Consensus 4 ~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~---~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~ 80 (343)
T 1g55_A 4 RVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---HTQLLAKTIEGITLEEFDRLSFDMILMSPPCQP 80 (343)
T ss_dssp EEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---TSCEECSCGGGCCHHHHHHHCCSEEEECCC---
T ss_pred eEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc---ccccccCCHHHccHhHcCcCCcCEEEEcCCCcc
Confidence 89999999999999999988 4579999999999999999985 34578889988732 12226899999988776
Q ss_pred hc
Q 028547 126 LL 127 (207)
Q Consensus 126 ~~ 127 (207)
++
T Consensus 81 fS 82 (343)
T 1g55_A 81 FT 82 (343)
T ss_dssp --
T ss_pred hh
Confidence 64
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00027 Score=53.72 Aligned_cols=55 Identities=9% Similarity=0.082 Sum_probs=44.8
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
+..++.....+.. .|||..||+|..+....+.|- +++|+|+++..++.+++++..
T Consensus 202 ~~~~i~~~~~~~~-~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~ 256 (260)
T 1g60_A 202 IERIIRASSNPND-LVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQ 256 (260)
T ss_dssp HHHHHHHHCCTTC-EEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCC-EEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHh
Confidence 3344555444444 999999999999999998876 999999999999999998753
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0014 Score=51.46 Aligned_cols=74 Identities=14% Similarity=0.207 Sum_probs=62.6
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+|||+-||.|.++.-+.+.|+..+.++|+++.+.+..+.++.. .++..|+.+..+..-...|+++...+.+.++
T Consensus 2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~----~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS 75 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA----KLIKGDISKISSDEFPKCDGIIGGPPSQSWS 75 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCS----EEEESCGGGCCGGGSCCCSEEECCCCGGGTE
T ss_pred eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC----CcccCChhhCCHhhCCcccEEEecCCCCCcC
Confidence 7999999999999999888987788999999999999988743 6788999987543445789999998888775
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0021 Score=50.68 Aligned_cols=117 Identities=11% Similarity=0.159 Sum_probs=80.3
Q ss_pred HHHHHHhhCC-CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC---------------------
Q 028547 36 LAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN--------------------- 92 (207)
Q Consensus 36 ~~~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~--------------------- 92 (207)
+...+..++. .+...|+.+|||.......+...+. ..++-+|. |+.++.-++.+..
T Consensus 85 iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~ 163 (334)
T 1rjd_A 85 IDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFL 163 (334)
T ss_dssp HHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEE
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccc
Confidence 3344444443 2234999999999988888877532 25666665 6666665554332
Q ss_pred --CCCceEEEecccccc-------cc-CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 93 --RPQLKYIKMDVRQMD-------EF-QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 93 --~~~~~~~~~d~~~~~-------~~-~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
..+..++.+|+.+.. .. ......++++-+++.++ +++....+++.+.+.. |+|.+++.+..
T Consensus 164 ~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL-----~~~~~~~ll~~ia~~~-~~~~~v~~e~i 234 (334)
T 1rjd_A 164 IDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYM-----HNNESQLLINTIMSKF-SHGLWISYDPI 234 (334)
T ss_dssp EECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS-----CHHHHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred cCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCC-----CHHHHHHHHHHHHhhC-CCcEEEEEecc
Confidence 147889999998741 11 22456889999999998 7889999999999887 77877655543
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0094 Score=46.04 Aligned_cols=76 Identities=21% Similarity=0.167 Sum_probs=61.3
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCc--EEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc--cC-CCCeeEEEeCcch
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYED--VVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQ-TGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~--v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~--~~-~~~fD~v~~~~~l 123 (207)
.+|+|+-||.|.++.-+.+.|+.. +.++|+++.+.+..+.++. ...+...|+.+..+ ++ ...+|+++...+.
T Consensus 17 ~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~---~~~~~~~DI~~i~~~~i~~~~~~Dll~ggpPC 93 (295)
T 2qrv_A 17 IRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ---GKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPC 93 (295)
T ss_dssp EEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT---TCEEEECCGGGCCHHHHHHTCCCSEEEECCCC
T ss_pred CEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC---CCceeCCChHHccHHHhcccCCcCEEEecCCC
Confidence 399999999999999999888743 6899999999998888864 34678889988732 11 2469999999888
Q ss_pred hhhc
Q 028547 124 DSLL 127 (207)
Q Consensus 124 ~~~~ 127 (207)
..++
T Consensus 94 Q~fS 97 (295)
T 2qrv_A 94 NDLS 97 (295)
T ss_dssp GGGB
T ss_pred cccc
Confidence 8876
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0035 Score=51.76 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=62.1
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc----------------CCCC
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF----------------QTGS 113 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~----------------~~~~ 113 (207)
+++|+-||.|.++.-+.+.|+..+.++|+++.+.+..+.++...+...+++.|+.+.... ....
T Consensus 90 ~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~~~~~ 169 (482)
T 3me5_A 90 RFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQHIPE 169 (482)
T ss_dssp EEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHHHSCC
T ss_pred eEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhhhcCCC
Confidence 899999999999999988888678999999999999998885445567788888876311 1246
Q ss_pred eeEEEeCcchhhhc
Q 028547 114 FDSVVDKGTLDSLL 127 (207)
Q Consensus 114 fD~v~~~~~l~~~~ 127 (207)
+|+++...+...++
T Consensus 170 ~Dvl~gGpPCQ~FS 183 (482)
T 3me5_A 170 HDVLLAGFPCQPFS 183 (482)
T ss_dssp CSEEEEECCCCCC-
T ss_pred CCEEEecCCCcchh
Confidence 89999887777664
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.021 Score=44.38 Aligned_cols=117 Identities=13% Similarity=0.078 Sum_probs=79.7
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-----CCCCceEEEecccccc--c--
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-----NRPQLKYIKMDVRQMD--E-- 108 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-----~~~~~~~~~~d~~~~~--~-- 108 (207)
..++.++......|++||||-=.....+.......++=+| .|..++..++.+. ...+..++.+|+.+.. .
T Consensus 93 ~~v~~~~~~g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~ 171 (310)
T 2uyo_A 93 TYFNNAVIDGIRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALR 171 (310)
T ss_dssp HHHHHHHHTTCCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHhCCCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHH
Confidence 3343443333348999999975554444422113788888 5888888877765 2357888889987620 0
Q ss_pred ---cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 109 ---FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 109 ---~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+....-=++++-++++++ +.+....+++.+...+.||+.+++.....
T Consensus 172 ~~g~d~~~Pt~~i~Egvl~Yl-----~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 172 SAGFDPSARTAWLAEGLLMYL-----PATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp HTTCCTTSCEEEEECSCGGGS-----CHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred hccCCCCCCEEEEEechHhhC-----CHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 112334578888899988 66788999999999988988888766543
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0033 Score=49.37 Aligned_cols=73 Identities=5% Similarity=0.095 Sum_probs=58.4
Q ss_pred cEEEEcCCCchhhHHHHhcCC--CcE-EEEeCCHHHHHHHHHHccCCCCceEEEeccccccc--cCCCCeeEEEeCcchh
Q 028547 50 RILIVGCGNSAFSEGMVDDGY--EDV-VNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~--~~v-~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~v~~~~~l~ 124 (207)
+++|+.||.|.++.-+.+.|. ..+ .++|+++.+.+..+.+++.. ++..|+.+..+ ++...+|+++...+..
T Consensus 12 ~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~----~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ 87 (327)
T 3qv2_A 12 NVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE----VQVKNLDSISIKQIESLNCNTWFMSPPCQ 87 (327)
T ss_dssp EEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC----CBCCCTTTCCHHHHHHTCCCEEEECCCCT
T ss_pred EEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC----cccCChhhcCHHHhccCCCCEEEecCCcc
Confidence 899999999999999988884 456 79999999999999998652 56778887632 2233689999988877
Q ss_pred hh
Q 028547 125 SL 126 (207)
Q Consensus 125 ~~ 126 (207)
.+
T Consensus 88 ~f 89 (327)
T 3qv2_A 88 PY 89 (327)
T ss_dssp TC
T ss_pred Cc
Confidence 65
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.017 Score=43.56 Aligned_cols=106 Identities=9% Similarity=0.072 Sum_probs=71.4
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhc-------CC-CcEEEEe-----CCH----------------------HHHHHHH-
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDD-------GY-EDVVNVD-----ISS----------------------VVIEAMM- 87 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~-------~~-~~v~~~D-----~s~----------------------~~i~~~~- 87 (207)
...++ .|+|+|+-.|.-+..++.. +. .+++++| +.+ +.+....
T Consensus 67 ~~vpG-~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~ 145 (257)
T 3tos_A 67 LDVPG-VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLD 145 (257)
T ss_dssp TTSCS-EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHH
T ss_pred hCCCC-eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHH
Confidence 34455 9999999999877776542 22 5899998 321 1122111
Q ss_pred --HH---ccC-CCCceEEEeccccccc-----cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 88 --KK---YSN-RPQLKYIKMDVRQMDE-----FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 88 --~~---~~~-~~~~~~~~~d~~~~~~-----~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
++ +.. ..++.++.+++.+..+ .+..++|+|+...-. . ......++.+...|+|||++++-
T Consensus 146 ~~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y-------~~t~~~le~~~p~l~~GGvIv~D 216 (257)
T 3tos_A 146 AHECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--Y-------EPTKAVLEAIRPYLTKGSIVAFD 216 (257)
T ss_dssp HHHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--H-------HHHHHHHHHHGGGEEEEEEEEES
T ss_pred HHhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--c-------chHHHHHHHHHHHhCCCcEEEEc
Confidence 11 222 2679999999988532 244579999976432 1 56677899999999999999997
Q ss_pred EeC
Q 028547 157 TYG 159 (207)
Q Consensus 157 ~~~ 159 (207)
.+.
T Consensus 217 D~~ 219 (257)
T 3tos_A 217 ELD 219 (257)
T ss_dssp STT
T ss_pred CCC
Confidence 764
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0037 Score=49.19 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=60.3
Q ss_pred cEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc--cCCCCeeEEEeCcchhh
Q 028547 50 RILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~v~~~~~l~~ 125 (207)
+++|+-||.|.+..-+.+.|. ..+.++|+++.+.+..+.+++. ..++..|+.+..+ ++...+|+++...+...
T Consensus 5 ~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~---~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~ 81 (333)
T 4h0n_A 5 KILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE---TNLLNRNIQQLTPQVIKKWNVDTILMSPPCQP 81 (333)
T ss_dssp EEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT---SCEECCCGGGCCHHHHHHTTCCEEEECCCCCC
T ss_pred EEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC---CceeccccccCCHHHhccCCCCEEEecCCCcc
Confidence 899999999999999888875 5788999999999999998853 4577888888632 23336899999888776
Q ss_pred hc
Q 028547 126 LL 127 (207)
Q Consensus 126 ~~ 127 (207)
++
T Consensus 82 fS 83 (333)
T 4h0n_A 82 FT 83 (333)
T ss_dssp SE
T ss_pred hh
Confidence 64
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0032 Score=48.72 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=43.7
Q ss_pred CCceEEEeccccc-cccCCCCeeEEEeCcchhhhccCCCC-------------hhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 94 PQLKYIKMDVRQM-DEFQTGSFDSVVDKGTLDSLLCGSNS-------------RQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 94 ~~~~~~~~d~~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~-------------~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..++++++|+.+. ..+++++||+|+++.++......... ......+++++.++|+|||.+++..
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV 97 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3568999999984 23467899999999887532100000 0123567889999999999998864
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0091 Score=46.73 Aligned_cols=69 Identities=6% Similarity=0.040 Sum_probs=51.3
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccc
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQM 106 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~ 106 (207)
+..++.....+.. .|||.-||+|..+....+.|- +++|+|+++...+.+++++... .....++.|+.+.
T Consensus 242 ~~~~i~~~~~~~~-~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~i 311 (323)
T 1boo_A 242 PEFFIRMLTEPDD-LVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNISEEKITDIYNRI 311 (323)
T ss_dssp HHHHHHHHCCTTC-EEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCC-EEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 3344544444444 999999999999999888876 9999999999999999998753 2344444555544
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0034 Score=54.22 Aligned_cols=102 Identities=11% Similarity=0.058 Sum_probs=65.9
Q ss_pred CcEEEEcCCCchhhHHHHhcC-----------C--CcEEEEeC---CHHHHHHHHHHcc-----------C---------
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-----------Y--EDVVNVDI---SSVVIEAMMKKYS-----------N--------- 92 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-----------~--~~v~~~D~---s~~~i~~~~~~~~-----------~--------- 92 (207)
-+|+|+|.|+|.....+.+.. . -+++++|. +.+.+..+...++ .
T Consensus 60 ~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 139 (689)
T 3pvc_A 60 CIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGCH 139 (689)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEE
T ss_pred eEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCce
Confidence 399999999998776554421 1 26899998 5555544322111 0
Q ss_pred -------CCCceEEEeccccccccC----CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 93 -------RPQLKYIKMDVRQMDEFQ----TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 93 -------~~~~~~~~~d~~~~~~~~----~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
...+++..+|+.+..+.- ...+|.++.. .+....+++-....++..+.++++|||.+.
T Consensus 140 r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD----~f~p~~np~~w~~~~~~~l~~~~~~g~~~~ 208 (689)
T 3pvc_A 140 RILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLD----GFAPAKNPDMWNEQLFNAMARMTRPGGTFS 208 (689)
T ss_dssp EEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEEC----SSCC--CCTTCSHHHHHHHHHHEEEEEEEE
T ss_pred EEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEEC----CCCCCCChhhhhHHHHHHHHHHhCCCCEEE
Confidence 014567778887753321 4689999954 443444555567889999999999999865
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.025 Score=44.91 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=62.2
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccc-ccccCCCCeeEEEeC
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEFQTGSFDSVVDK 120 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~-~~~~~~~~fD~v~~~ 120 (207)
.+.+||-+|+|. |.++..+++. |...|+++|.+++.++.+++.-.. .++.. ++.+ ......+.+|+|+..
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~----~vi~~~~~~~~~~~~~~~~gg~D~vid~ 265 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT----HVINSKTQDPVAAIKEITDGGVNFALES 265 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS----EEEETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCC----EEecCCccCHHHHHHHhcCCCCcEEEEC
Confidence 345999999876 7888888774 554799999999988888764211 22221 1111 111122379999864
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.. ....++.+.+.|+++|.+++...
T Consensus 266 ~g-------------~~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 266 TG-------------SPEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp SC-------------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred CC-------------CHHHHHHHHHHHhcCCEEEEeCC
Confidence 21 13457888999999999887653
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0044 Score=53.41 Aligned_cols=101 Identities=10% Similarity=0.088 Sum_probs=65.1
Q ss_pred cEEEEcCCCchhhHHHHhc------------CC-CcEEEEeC---CHHHHHHHHHH--------------ccC-------
Q 028547 50 RILIVGCGNSAFSEGMVDD------------GY-EDVVNVDI---SSVVIEAMMKK--------------YSN------- 92 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~------------~~-~~v~~~D~---s~~~i~~~~~~--------------~~~------- 92 (207)
+|+|+|.|+|.......+. .. -+++++|. +.+.+..+... .+.
T Consensus 69 ~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (676)
T 3ps9_A 69 VVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHR 148 (676)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEEE
T ss_pred EEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCceE
Confidence 9999999999776554332 11 15899998 77776643331 111
Q ss_pred ------CCCceEEEeccccccccC----CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 93 ------RPQLKYIKMDVRQMDEFQ----TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 93 ------~~~~~~~~~d~~~~~~~~----~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
...+.+..+|+.+..+.- ...||+++..+ +....+++-....++..++++++|||.+.
T Consensus 149 ~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~----f~p~~np~~w~~~~~~~l~~~~~~g~~~~ 216 (676)
T 3ps9_A 149 LLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDG----FAPAKNPDMWTQNLFNAMARLARPGGTLA 216 (676)
T ss_dssp EEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECC----SCGGGCGGGSCHHHHHHHHHHEEEEEEEE
T ss_pred EEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECC----CCCcCChhhhhHHHHHHHHHHhCCCCEEE
Confidence 012345566776642211 46799999543 33333455567889999999999999876
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.013 Score=45.80 Aligned_cols=55 Identities=9% Similarity=0.166 Sum_probs=43.6
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCH---HHHHHHHHHccC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISS---VVIEAMMKKYSN 92 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~---~~i~~~~~~~~~ 92 (207)
+..++.....+.. .|||.-||+|..+....+.+- +++|+|+++ ..++.+++++..
T Consensus 232 ~~~~i~~~~~~~~-~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 232 IERLVRALSHPGS-TVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp HHHHHHHHSCTTC-EEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC--
T ss_pred HHHHHHHhCCCCC-EEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHH
Confidence 3345555544444 999999999999999988876 999999999 999999998764
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.045 Score=43.20 Aligned_cols=96 Identities=13% Similarity=0.199 Sum_probs=61.7
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec------cc-cccccCCCCeeE
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD------VR-QMDEFQTGSFDS 116 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d------~~-~~~~~~~~~fD~ 116 (207)
+.+.+||-+|+|. |.++..+++. |..+|+++|.+++.++.+++.-.. .++..+ .. .........+|+
T Consensus 170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~----~vi~~~~~~~~~~~~~i~~~~~~g~D~ 245 (356)
T 1pl8_A 170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD----LVLQISKESPQEIARKVEGQLGCKPEV 245 (356)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS----EEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC----EEEcCcccccchHHHHHHHHhCCCCCE
Confidence 3345999999875 7888888775 444899999999888888753211 222211 11 111111257999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|+..-. ....++...+.|+++|.++....
T Consensus 246 vid~~g-------------~~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 246 TIECTG-------------AEASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp EEECSC-------------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred EEECCC-------------ChHHHHHHHHHhcCCCEEEEEec
Confidence 996421 13356778899999999987653
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.017 Score=46.69 Aligned_cols=45 Identities=9% Similarity=0.231 Sum_probs=37.5
Q ss_pred CCcEEEEcCCCchhhHHHH-hcC--CCcEEEEeCCHHHHHHHHHHccC
Q 028547 48 HQRILIVGCGNSAFSEGMV-DDG--YEDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~-~~~--~~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
+..|+|+|++.|..+..++ +.+ ..+|+++|+++...+..+++...
T Consensus 227 ~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 227 SEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp SCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 3499999999999999887 433 25999999999999998887653
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.056 Score=43.00 Aligned_cols=96 Identities=15% Similarity=0.245 Sum_probs=61.8
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec-----ccc-ccccCCCCeeEE
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-----VRQ-MDEFQTGSFDSV 117 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d-----~~~-~~~~~~~~fD~v 117 (207)
+.+.+||-+|+|. |.++..+++. |..+|+++|.+++.++.+++.-.. .++... +.+ ......+.+|+|
T Consensus 192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~----~vi~~~~~~~~~~~~i~~~~~gg~D~v 267 (378)
T 3uko_A 192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVN----EFVNPKDHDKPIQEVIVDLTDGGVDYS 267 (378)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCC----EEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc----EEEccccCchhHHHHHHHhcCCCCCEE
Confidence 3345999999875 7777777775 555899999999888887653111 222111 111 111223479999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEEe
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 158 (207)
+.... ....++.+.+.|+++ |.+++...
T Consensus 268 id~~g-------------~~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 268 FECIG-------------NVSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp EECSC-------------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred EECCC-------------CHHHHHHHHHHhhccCCEEEEEcc
Confidence 96411 134678889999996 99887654
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.019 Score=44.96 Aligned_cols=64 Identities=14% Similarity=0.072 Sum_probs=45.3
Q ss_pred CCceEEEeccccc-cccCCCCeeEEEeCcchhhhccCCCC-------hhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 94 PQLKYIKMDVRQM-DEFQTGSFDSVVDKGTLDSLLCGSNS-------RQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 94 ~~~~~~~~d~~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~-------~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
....++++|..+. ..++.++||+|++..++........+ .......++.+.++|+|||.+++..
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~ 84 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 84 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEE
Confidence 3578899998874 23567899999999887532100000 1256788899999999999998865
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.13 Score=40.52 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=63.8
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe------cccc-ccc-cCCCCee
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM------DVRQ-MDE-FQTGSFD 115 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~------d~~~-~~~-~~~~~fD 115 (207)
+.+.+||-+|+|. |.++..+++. |...|+++|.+++.++.+++. .. .+..... ++.+ ... .....+|
T Consensus 178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~--~~~~~~~~~~~~~~~~~~v~~~t~g~g~D 254 (363)
T 3m6i_A 178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP--EVVTHKVERLSAEESAKKIVESFGGIEPA 254 (363)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT--TCEEEECCSCCHHHHHHHHHHHTSSCCCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch--hcccccccccchHHHHHHHHHHhCCCCCC
Confidence 4445899999875 7788888775 454599999999999999876 32 2222221 1111 100 1245799
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+|+..-. -...++.+.+.|+++|.++....
T Consensus 255 vvid~~g-------------~~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 255 VALECTG-------------VESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp EEEECSC-------------CHHHHHHHHHHSCTTCEEEECCC
T ss_pred EEEECCC-------------ChHHHHHHHHHhcCCCEEEEEcc
Confidence 9996411 13457788899999999987654
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.12 Score=41.37 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=33.2
Q ss_pred cEEEEcCCCchhhHHHHhc--------CCCcEEEEeCCHHHHHHHHHHccC
Q 028547 50 RILIVGCGNSAFSEGMVDD--------GYEDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~--------~~~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
.|+|+|.|.|.++..++.. ...+|+.||+|+...+.-++++..
T Consensus 83 ~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 133 (387)
T 1zkd_A 83 RLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG 133 (387)
T ss_dssp EEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred EEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence 7999999999998877642 113899999999887766666644
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.074 Score=41.77 Aligned_cols=92 Identities=14% Similarity=0.182 Sum_probs=61.4
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
+.+.+||-+|+|. |.++..+++. |. +|++++.+++.++.+++. .. -.++ .+.... . ..+|+|+..-.-
T Consensus 175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l-Ga---~~v~-~~~~~~---~-~~~D~vid~~g~ 244 (348)
T 3two_A 175 TKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSM-GV---KHFY-TDPKQC---K-EELDFIISTIPT 244 (348)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHT-TC---SEEE-SSGGGC---C-SCEEEEEECCCS
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhc-CC---Ceec-CCHHHH---h-cCCCEEEECCCc
Confidence 3445999999875 7777777775 45 999999999888888763 21 1222 332222 2 279999964211
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
...++...+.|+++|.++......
T Consensus 245 -------------~~~~~~~~~~l~~~G~iv~~G~~~ 268 (348)
T 3two_A 245 -------------HYDLKDYLKLLTYNGDLALVGLPP 268 (348)
T ss_dssp -------------CCCHHHHHTTEEEEEEEEECCCCC
T ss_pred -------------HHHHHHHHHHHhcCCEEEEECCCC
Confidence 113667789999999998875433
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.043 Score=43.50 Aligned_cols=91 Identities=15% Similarity=0.202 Sum_probs=60.6
Q ss_pred CcEEEEc-CCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe--cccc-ccccCCCCeeEEEeCcc
Q 028547 49 QRILIVG-CGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM--DVRQ-MDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG-~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~--d~~~-~~~~~~~~fD~v~~~~~ 122 (207)
.+||-.| +|. |.++..+++. +..+|++++.+++.++.+++.-.. .++.. ++.+ ......+.+|+|+...
T Consensus 173 ~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad----~vi~~~~~~~~~v~~~~~~g~Dvvid~~- 247 (363)
T 4dvj_A 173 PAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAH----HVIDHSKPLAAEVAALGLGAPAFVFSTT- 247 (363)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCS----EEECTTSCHHHHHHTTCSCCEEEEEECS-
T ss_pred CEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCC----EEEeCCCCHHHHHHHhcCCCceEEEECC-
Confidence 4899998 554 8888899885 445999999999888888763211 11111 1111 1112345799998641
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.-...++.+.+.|+++|.++..
T Consensus 248 ------------g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 248 ------------HTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp ------------CHHHHHHHHHHHSCTTCEEEEC
T ss_pred ------------CchhhHHHHHHHhcCCCEEEEE
Confidence 2234678889999999999876
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.16 Score=40.29 Aligned_cols=96 Identities=15% Similarity=0.180 Sum_probs=62.6
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE---eccccc-cc---cCCCCeeE
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK---MDVRQM-DE---FQTGSFDS 116 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~---~d~~~~-~~---~~~~~fD~ 116 (207)
+.+.+||-.|+|. |.++..+++. |...|+++|.+++..+.+++.-.. .++. .|+.+. .. ...+.+|+
T Consensus 181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~----~vi~~~~~~~~~~i~~~~~~~~gg~Dv 256 (370)
T 4ej6_A 181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT----ATVDPSAGDVVEAIAGPVGLVPGGVDV 256 (370)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS----EEECTTSSCHHHHHHSTTSSSTTCEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC----EEECCCCcCHHHHHHhhhhccCCCCCE
Confidence 3445999999875 7777777775 445899999999988888764211 1221 111111 11 22347999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|+.... ....++.+.+.|+++|.+++...
T Consensus 257 vid~~G-------------~~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 257 VIECAG-------------VAETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp EEECSC-------------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred EEECCC-------------CHHHHHHHHHHhccCCEEEEEec
Confidence 996411 13467788999999999987653
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.22 Score=39.12 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=63.1
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccc-ccc-cCCCCeeEEE
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDE-FQTGSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~-~~~-~~~~~fD~v~ 118 (207)
+++.+||-+|+|. |.++..+++. |..+|+++|.+++.++.+++.-.. .++.. |+.+ ... .....+|+|+
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~----~vi~~~~~~~~~~v~~~t~g~g~D~v~ 240 (352)
T 3fpc_A 165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT----DIINYKNGDIVEQILKATDGKGVDKVV 240 (352)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC----EEECGGGSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc----eEEcCCCcCHHHHHHHHcCCCCCCEEE
Confidence 3445999999876 7888888876 444899999999888888775221 22221 1111 001 1234799999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
....- ...++.+.+.|+++|.++.....
T Consensus 241 d~~g~-------------~~~~~~~~~~l~~~G~~v~~G~~ 268 (352)
T 3fpc_A 241 IAGGD-------------VHTFAQAVKMIKPGSDIGNVNYL 268 (352)
T ss_dssp ECSSC-------------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred ECCCC-------------hHHHHHHHHHHhcCCEEEEeccc
Confidence 64111 23577788999999999876543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.02 Score=44.85 Aligned_cols=94 Identities=14% Similarity=0.198 Sum_probs=61.7
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc----cccCCCCeeEEEe
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----DEFQTGSFDSVVD 119 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~fD~v~~ 119 (207)
+.+.+||-.|+|. |.++..+++. |. +|+++|.+++.++.+++.-.. .++...-.+. .. ..+.+|+|+.
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~----~~i~~~~~~~~~~~~~-~~g~~d~vid 238 (340)
T 3s2e_A 165 RPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAE----VAVNARDTDPAAWLQK-EIGGAHGVLV 238 (340)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCS----EEEETTTSCHHHHHHH-HHSSEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCC----EEEeCCCcCHHHHHHH-hCCCCCEEEE
Confidence 3445899999975 8888888875 45 999999999988888764211 2222111111 00 1236898885
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
... ....++.+.+.|+++|.++....
T Consensus 239 ~~g-------------~~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 239 TAV-------------SPKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp SSC-------------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred eCC-------------CHHHHHHHHHHhccCCEEEEeCC
Confidence 421 13467788899999999987653
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.11 Score=41.73 Aligned_cols=107 Identities=15% Similarity=0.213 Sum_probs=62.3
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cc-cc-cccc-CCCCeeEE
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DV-RQ-MDEF-QTGSFDSV 117 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~-~~-~~~~-~~~~fD~v 117 (207)
+.+.+||.+|+|. |.++..+++. |..+|+++|.+++.++.+++. . ..++.. |. .+ .... ....+|+|
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-G----a~~i~~~~~~~~~~~~~~~~~g~g~Dvv 258 (398)
T 2dph_A 184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA-G----FETIDLRNSAPLRDQIDQILGKPEVDCG 258 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT-T----CEEEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-C----CcEEcCCCcchHHHHHHHHhCCCCCCEE
Confidence 3345999999976 8888888775 545899999999988887643 1 222221 11 11 1001 22369999
Q ss_pred EeCcchhhhccCC-CChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGS-NSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+..-.-.....+. .........++.+.+.|+++|.+++..
T Consensus 259 id~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 259 VDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp EECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred EECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 8642211000000 000012346788899999999987654
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.12 Score=41.09 Aligned_cols=92 Identities=21% Similarity=0.244 Sum_probs=58.3
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc-ccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~fD~v~~~~~l 123 (207)
.+.+||-+|+|. |.++..+++. |. +|++++.+++.++.+++. .. ..++...-.+ ..... ..+|+|+....-
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~l-Ga---~~vi~~~~~~~~~~~~-~g~Dvvid~~g~ 267 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL-GA---DEVVNSRNADEMAAHL-KSFDFILNTVAA 267 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH-TC---SEEEETTCHHHHHTTT-TCEEEEEECCSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc-CC---cEEeccccHHHHHHhh-cCCCEEEECCCC
Confidence 345999999975 7777777775 45 799999999888888763 21 1222211011 11111 579999864211
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
...++...+.|+++|.++...
T Consensus 268 -------------~~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 268 -------------PHNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp -------------CCCHHHHHTTEEEEEEEEECC
T ss_pred -------------HHHHHHHHHHhccCCEEEEec
Confidence 113566789999999988754
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.14 Score=40.62 Aligned_cols=95 Identities=11% Similarity=0.117 Sum_probs=60.6
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec-----ccc-ccccCCCCeeEEE
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-----VRQ-MDEFQTGSFDSVV 118 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d-----~~~-~~~~~~~~fD~v~ 118 (207)
.+.+||-+|+|. |.++..+++. |..+|+++|.+++.++.+++. .. -.++..+ +.+ ......+.+|+|+
T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga---~~vi~~~~~~~~~~~~i~~~t~gg~Dvvi 266 (373)
T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL-GA---TECLNPKDYDKPIYEVICEKTNGGVDYAV 266 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT-TC---SEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC---cEEEecccccchHHHHHHHHhCCCCCEEE
Confidence 335999999875 7777777775 444799999999888888753 21 1222111 111 1111224799999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEEe
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 158 (207)
..-. ....++.+.+.|+++ |.++....
T Consensus 267 d~~g-------------~~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 267 ECAG-------------RIETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp ECSC-------------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred ECCC-------------CHHHHHHHHHHHhcCCCEEEEEcc
Confidence 6411 134577889999999 99887653
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.2 Score=39.34 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=60.2
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecc-cc----ccc-cC---CCCe
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDV-RQ----MDE-FQ---TGSF 114 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~-~~----~~~-~~---~~~f 114 (207)
+.+.+||-.|+|. |.++..+++. |. +|+++|.+++.++.+++.-.. .++..+- .+ ... .. ...+
T Consensus 167 ~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~----~~~~~~~~~~~~~~i~~~~~~~~g~g~ 241 (352)
T 1e3j_A 167 QLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGAD----VTLVVDPAKEEESSIIERIRSAIGDLP 241 (352)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCS----EEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCC----EEEcCcccccHHHHHHHHhccccCCCC
Confidence 3345999999875 7777777774 55 699999999988888753211 2222110 11 100 11 2569
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|+|+.... ....++...+.|+++|.++....
T Consensus 242 D~vid~~g-------------~~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 242 NVTIDCSG-------------NEKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp SEEEECSC-------------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred CEEEECCC-------------CHHHHHHHHHHHhcCCEEEEEec
Confidence 99996421 12356778899999999887653
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.22 Score=44.74 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=58.0
Q ss_pred cEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc--------------ccC-CCC
Q 028547 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD--------------EFQ-TGS 113 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~--------------~~~-~~~ 113 (207)
+++|+-||.|.++.-+.+.|+ ..+.++|+++.+.+..+.+++ +..++..|+.++. .++ .+.
T Consensus 542 ~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p---~~~~~~~DI~~l~~~~~~~di~~~~~~~lp~~~~ 618 (1002)
T 3swr_A 542 RTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP---GSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGD 618 (1002)
T ss_dssp EEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT---TSEEECSCHHHHHHHHHHTCSBCTTCCBCCCTTT
T ss_pred eEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC---CCccccccHHHHhhhccchhhhhhhhhhcccCCC
Confidence 899999999999999988887 578899999999999888874 4456666654320 112 347
Q ss_pred eeEEEeCcchhhhc
Q 028547 114 FDSVVDKGTLDSLL 127 (207)
Q Consensus 114 fD~v~~~~~l~~~~ 127 (207)
+|+|+...+...++
T Consensus 619 vDll~GGpPCQ~FS 632 (1002)
T 3swr_A 619 VEMLCGGPPCQGFS 632 (1002)
T ss_dssp CSEEEECCCCTTCC
T ss_pred eeEEEEcCCCcchh
Confidence 89999998887764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.74 Score=30.81 Aligned_cols=92 Identities=10% Similarity=0.096 Sum_probs=58.0
Q ss_pred cEEEEcCCC-ch-hhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc---cCCCCeeEEEeCcchh
Q 028547 50 RILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~G~-G~-~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~v~~~~~l~ 124 (207)
+|+-+|||. |. ++..+.+.|. +|+++|.+++.++.+++. .+.++.+|..+... .....+|+|++.-.-
T Consensus 9 ~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~-----g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~- 81 (140)
T 3fwz_A 9 HALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRER-----GVRAVLGNAANEEIMQLAHLECAKWLILTIPN- 81 (140)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-----TCEEEESCTTSHHHHHHTTGGGCSEEEECCSC-
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHc-----CCCEEECCCCCHHHHHhcCcccCCEEEEECCC-
Confidence 899999975 43 3334445566 999999999988887652 56788888876421 123578988854211
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
......+-...+.+.|+..++...
T Consensus 82 ---------~~~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 82 ---------GYEAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp ---------HHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred ---------hHHHHHHHHHHHHHCCCCeEEEEE
Confidence 122222334566677777655443
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.17 E-value=0.29 Score=38.77 Aligned_cols=95 Identities=13% Similarity=0.186 Sum_probs=60.1
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec-----ccc-ccccCCCCeeEEE
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-----VRQ-MDEFQTGSFDSVV 118 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d-----~~~-~~~~~~~~fD~v~ 118 (207)
.+.+||-+|+|. |.++..+++. |..+|+++|.+++.++.+++. .. -.++..+ +.+ ......+.+|+|+
T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga---~~vi~~~~~~~~~~~~~~~~~~~g~D~vi 266 (374)
T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV-GA---TECVNPQDYKKPIQEVLTEMSNGGVDFSF 266 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TC---SEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC---ceEecccccchhHHHHHHHHhCCCCcEEE
Confidence 335999999875 7777777775 444799999999888888653 21 1222111 111 1111224799998
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEEe
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 158 (207)
..-. ....++...+.|+++ |.++....
T Consensus 267 d~~g-------------~~~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 267 EVIG-------------RLDTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp ECSC-------------CHHHHHHHHHHBCTTTCEEEECSC
T ss_pred ECCC-------------CHHHHHHHHHHhhcCCcEEEEecc
Confidence 6421 134577888999999 99887653
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.25 Score=39.14 Aligned_cols=95 Identities=14% Similarity=0.227 Sum_probs=60.2
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec-----ccc-ccccCCCCeeEEE
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-----VRQ-MDEFQTGSFDSVV 118 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d-----~~~-~~~~~~~~fD~v~ 118 (207)
.+.+||-+|+|. |.++..+++. |..+|+++|.+++.++.+++. .. -.++... +.+ ......+.+|+|+
T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga---~~vi~~~~~~~~~~~~~~~~~~~g~D~vi 267 (374)
T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF-GA---TDFVNPNDHSEPISQVLSKMTNGGVDFSL 267 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TC---CEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-CC---ceEEeccccchhHHHHHHHHhCCCCCEEE
Confidence 335999999865 7777777775 444799999999888888753 21 1122111 111 1011124799999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEEe
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 158 (207)
..-. ....++.+.+.|+++ |.++....
T Consensus 268 d~~g-------------~~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 268 ECVG-------------NVGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp ECSC-------------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred ECCC-------------CHHHHHHHHHHhhcCCcEEEEEcC
Confidence 6421 134577889999999 99887653
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.0086 Score=45.50 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=42.1
Q ss_pred CceEE-EeccccccccCCCCeeEEEeCcchhhhccC-C---CChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 95 QLKYI-KMDVRQMDEFQTGSFDSVVDKGTLDSLLCG-S---NSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 95 ~~~~~-~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~-~---~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
...++ .+|+.... ..+.+|+|+++.....-..+ . +......-+++.+.++|+|||.|++..+.....
T Consensus 189 GAt~~~~lDfg~p~--~~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr 260 (320)
T 2hwk_A 189 EATFRARLDLGIPG--DVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADR 260 (320)
T ss_dssp TCSEECCGGGCSCT--TSCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSH
T ss_pred CceeecccccCCcc--ccCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcc
Confidence 44555 67777753 33679999997544321000 0 001223346677789999999999999988743
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.28 Score=38.89 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=60.3
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec-----ccc-ccccCCCCeeEEE
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-----VRQ-MDEFQTGSFDSVV 118 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d-----~~~-~~~~~~~~fD~v~ 118 (207)
.+.+||-+|+|. |.++..+++. |..+|+++|.+++.++.+++. .. -.++..+ +.+ ......+.+|+|+
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga---~~vi~~~~~~~~~~~~v~~~~~~g~Dvvi 270 (376)
T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL-GA---TDCLNPRELDKPVQDVITELTAGGVDYSL 270 (376)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TC---SEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC---cEEEccccccchHHHHHHHHhCCCccEEE
Confidence 335999999875 7777777775 444799999999888888653 21 1122111 111 1011124799999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEEe
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 158 (207)
..-. ....++.+.+.|+++ |.+++...
T Consensus 271 d~~G-------------~~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 271 DCAG-------------TAQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp ESSC-------------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred ECCC-------------CHHHHHHHHHHhhcCCCEEEEECC
Confidence 6411 134577889999999 99887654
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.22 Score=39.44 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=60.5
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec-----ccc-ccccCCCCeeEEE
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD-----VRQ-MDEFQTGSFDSVV 118 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d-----~~~-~~~~~~~~fD~v~ 118 (207)
.+.+||-+|+|. |.++..+++. |..+|+++|.+++.++.+++.-.. .++... +.+ ......+.+|+|+
T Consensus 190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~----~vi~~~~~~~~~~~~v~~~~~~g~D~vi 265 (373)
T 2fzw_A 190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT----ECINPQDFSKPIQEVLIEMTDGGVDYSF 265 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS----EEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc----eEeccccccccHHHHHHHHhCCCCCEEE
Confidence 335899999865 7777777764 444799999999888888754211 222111 111 1111224799999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEEe
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 158 (207)
.... ....++.+.+.|+++ |.++....
T Consensus 266 d~~g-------------~~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 266 ECIG-------------NVKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp ECSC-------------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred ECCC-------------cHHHHHHHHHhhccCCcEEEEEec
Confidence 6421 134577889999999 99887653
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.22 Score=43.63 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=40.6
Q ss_pred CcEEEEcCCCchhhHHHHhcC------CCcEEEEeCCHHHHHHHHHHccCCCCceEEEecc
Q 028547 49 QRILIVGCGNSAFSEGMVDDG------YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDV 103 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~------~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~ 103 (207)
.+|||+-||.|.++.-+.+.| +..+.++|+++.+++..+.|++. ..+.+.|+
T Consensus 213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp~---~~~~~~di 270 (784)
T 4ft4_B 213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHPQ---TEVRNEKA 270 (784)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCTT---SEEEESCH
T ss_pred CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCCC---CceecCcH
Confidence 489999999999988877655 45678999999999999988743 34444444
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.31 Score=38.76 Aligned_cols=95 Identities=15% Similarity=0.154 Sum_probs=60.4
Q ss_pred CCCcEEEEcCCC-chhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEec------ccc-cccc-CCCCeeE
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD------VRQ-MDEF-QTGSFDS 116 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d------~~~-~~~~-~~~~fD~ 116 (207)
.+.+||-.|+|. |.++..+++... .+|++++.+++.++.+++. .. -.++..+ +.+ .... ....+|+
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l-Ga---~~vi~~~~~~~~~~~~~v~~~~~g~g~Dv 270 (380)
T 1vj0_A 195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI-GA---DLTLNRRETSVEERRKAIMDITHGRGADF 270 (380)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT-TC---SEEEETTTSCHHHHHHHHHHHTTTSCEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc-CC---cEEEeccccCcchHHHHHHHHhCCCCCcE
Confidence 335999999764 777777777533 4999999999988888753 21 1222211 111 1111 2336999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|+....- ...++...+.|+++|.++....
T Consensus 271 vid~~g~-------------~~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 271 ILEATGD-------------SRALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp EEECSSC-------------TTHHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCC-------------HHHHHHHHHHHhcCCEEEEEec
Confidence 9964211 1246778899999999887653
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.38 Score=37.96 Aligned_cols=94 Identities=11% Similarity=0.117 Sum_probs=60.5
Q ss_pred CCCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc----cc-cCCCCeeEEEeC
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----DE-FQTGSFDSVVDK 120 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~----~~-~~~~~fD~v~~~ 120 (207)
.+.+||-+|+|. |..+..+++....+|++++.+++.++.+++.-.. .++..+-.+. .. .....+|+|+..
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~----~vi~~~~~~~~~~v~~~~~g~g~D~vid~ 264 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGAD----HGINRLEEDWVERVYALTGDRGADHILEI 264 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS----EEEETTTSCHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCC----EEEcCCcccHHHHHHHHhCCCCceEEEEC
Confidence 345999999875 7777777775323999999999888888764211 2222111111 00 123479999864
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.. ...++.+.+.|+++|.++....
T Consensus 265 ~g--------------~~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 265 AG--------------GAGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp TT--------------SSCHHHHHHHEEEEEEEEEECC
T ss_pred CC--------------hHHHHHHHHHhhcCCEEEEEec
Confidence 21 1236677899999999988764
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.80 E-value=0.47 Score=37.87 Aligned_cols=106 Identities=11% Similarity=0.183 Sum_probs=62.8
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec----ccc-ccc-cCCCCeeEEE
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD----VRQ-MDE-FQTGSFDSVV 118 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d----~~~-~~~-~~~~~fD~v~ 118 (207)
.+.+||-+|+|. |.++..+++. |...|+++|.+++.++.+++. . ...+... +.+ ... .....+|+|+
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l-G----a~~i~~~~~~~~~~~v~~~t~g~g~Dvvi 259 (398)
T 1kol_A 185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-G----FEIADLSLDTPLHEQIAALLGEPEVDCAV 259 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-T----CEEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc-C----CcEEccCCcchHHHHHHHHhCCCCCCEEE
Confidence 345999999876 8888888875 444799999999988888653 1 1222211 111 101 1234799999
Q ss_pred eCcchhhhccC--CCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..-.-...... -.........++...+.|+++|.+++..
T Consensus 260 d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 260 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred ECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 64221100000 0000122346788899999999987754
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.17 Score=39.58 Aligned_cols=94 Identities=12% Similarity=0.192 Sum_probs=60.3
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc---CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecc-cc-cccc-CCCCeeEEEe
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD---GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDV-RQ-MDEF-QTGSFDSVVD 119 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~---~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~-~~-~~~~-~~~~fD~v~~ 119 (207)
.+.+||-+|+|. |.++..+++. |. +|++++.+++.++.+++.-.. .++..+- .+ .... ....+|+|+.
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~lGa~----~vi~~~~~~~~~~~~~~g~g~D~vid 244 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALELGAD----YVSEMKDAESLINKLTDGLGASIAID 244 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHHTCS----EEECHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHhCCC----EEeccccchHHHHHhhcCCCccEEEE
Confidence 344999999965 7777777764 55 899999999988888764211 2221110 01 0011 2337999996
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.-. ....++.+.+.|+++|.++....
T Consensus 245 ~~g-------------~~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 245 LVG-------------TEETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp SSC-------------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred CCC-------------ChHHHHHHHHHhhcCCEEEEeCC
Confidence 421 13357788899999999887553
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.86 Score=35.44 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=60.1
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec---cccc-cc-cCCCCeeEEE
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD---VRQM-DE-FQTGSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d---~~~~-~~-~~~~~fD~v~ 118 (207)
+.+.+||-.|+|. |.++..+++. |...++++|.+++-++.+++.-. ..++... ..+. .. .....+|+|+
T Consensus 159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa----~~~i~~~~~~~~~~~~~~~~~~g~d~v~ 234 (346)
T 4a2c_A 159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGA----MQTFNSSEMSAPQMQSVLRELRFNQLIL 234 (346)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC----SEEEETTTSCHHHHHHHHGGGCSSEEEE
T ss_pred CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCC----eEEEeCCCCCHHHHHHhhcccCCccccc
Confidence 3445999999875 5666666664 55577899999998888876421 1222211 1111 00 1235678888
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
... .....++...+.|+++|.+++...
T Consensus 235 d~~-------------G~~~~~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 235 ETA-------------GVPQTVELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp ECS-------------CSHHHHHHHHHHCCTTCEEEECCC
T ss_pred ccc-------------cccchhhhhhheecCCeEEEEEec
Confidence 531 124457778899999999987653
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.28 Score=38.34 Aligned_cols=96 Identities=14% Similarity=0.171 Sum_probs=62.8
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec--ccc-cccc-CCCCeeEEEe
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD--VRQ-MDEF-QTGSFDSVVD 119 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d--~~~-~~~~-~~~~fD~v~~ 119 (207)
+++.+||-+|+|. |.++..+++. +..+|+++|.+++.++.+++.-.. .++..+ ..+ .... ....+|+|+.
T Consensus 170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~----~~i~~~~~~~~~v~~~t~g~g~d~v~d 245 (345)
T 3jv7_A 170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGAD----AAVKSGAGAADAIRELTGGQGATAVFD 245 (345)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCS----EEEECSTTHHHHHHHHHGGGCEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC----EEEcCCCcHHHHHHHHhCCCCCeEEEE
Confidence 3344999999875 7888888775 345999999999998888764211 222211 111 1001 2347999996
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.- .....++.+.+.|+++|.++....
T Consensus 246 ~~-------------G~~~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 246 FV-------------GAQSTIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp SS-------------CCHHHHHHHHHHEEEEEEEEECSC
T ss_pred CC-------------CCHHHHHHHHHHHhcCCEEEEECC
Confidence 41 113467888999999999987654
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.47 Score=37.00 Aligned_cols=92 Identities=17% Similarity=0.250 Sum_probs=59.3
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc------cccCCCCeeEE
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM------DEFQTGSFDSV 117 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~fD~v 117 (207)
+.+.+||-+|+|. |..+..+++. |. +|++++.+++.++.+++. .. ..+ .|..+. .... +.+|+|
T Consensus 163 ~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l-Ga---~~~--~d~~~~~~~~~~~~~~-~~~d~v 234 (339)
T 1rjw_A 163 KPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKEL-GA---DLV--VNPLKEDAAKFMKEKV-GGVHAA 234 (339)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT-TC---SEE--ECTTTSCHHHHHHHHH-SSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHC-CC---CEE--ecCCCccHHHHHHHHh-CCCCEE
Confidence 3345999999864 7777777664 55 999999999888888652 21 111 122211 0011 479999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+.... ....++...+.|+++|.++....
T Consensus 235 id~~g-------------~~~~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 235 VVTAV-------------SKPAFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp EESSC-------------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred EECCC-------------CHHHHHHHHHHhhcCCEEEEecc
Confidence 86421 12457788899999999887643
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.12 Score=40.34 Aligned_cols=94 Identities=13% Similarity=0.132 Sum_probs=59.6
Q ss_pred CCCCcEEEEcC--CCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc----cccCCCCeeEEE
Q 028547 46 SHHQRILIVGC--GNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----DEFQTGSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG~--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~fD~v~ 118 (207)
+.+++||-.|+ |.|..+..+++. |. +|++++.+++.++.+.+.+.. ..++...-.+. .....+.+|+|+
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~d~vi 223 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEELGF---DGAIDYKNEDLAAGLKRECPKGIDVFF 223 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCC---SEEEETTTSCHHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCC---CEEEECCCHHHHHHHHHhcCCCceEEE
Confidence 34459999998 346777777664 55 999999999888888444321 11221111111 011235799998
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.... ...++.+.+.|+++|.++...
T Consensus 224 ~~~g--------------~~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 224 DNVG--------------GEILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp ESSC--------------HHHHHHHHTTEEEEEEEEECC
T ss_pred ECCC--------------cchHHHHHHHHhhCCEEEEEe
Confidence 6421 136788889999999988765
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.14 Score=40.10 Aligned_cols=92 Identities=14% Similarity=0.200 Sum_probs=58.7
Q ss_pred CCCcEEEEc-CCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe--cccc-ccccCCCCeeEEEeC
Q 028547 47 HHQRILIVG-CGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM--DVRQ-MDEFQTGSFDSVVDK 120 (207)
Q Consensus 47 ~~~~vLdiG-~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~--d~~~-~~~~~~~~fD~v~~~ 120 (207)
.+.+||-.| +|. |..+..+++. |. +|++++.+++.++.+++.-.. .++.. ++.+ ........+|+|+..
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~----~vi~~~~~~~~~~~~~~~~g~Dvv~d~ 224 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKMGAD----IVLNHKESLLNQFKTQGIELVDYVFCT 224 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHHTCS----EEECTTSCHHHHHHHHTCCCEEEEEES
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCc----EEEECCccHHHHHHHhCCCCccEEEEC
Confidence 344899884 543 7777777765 55 999999999988888774211 11111 1111 111234579999964
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
. .....++.+.+.|+++|.++..
T Consensus 225 ~-------------g~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 225 F-------------NTDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp S-------------CHHHHHHHHHHHEEEEEEEEES
T ss_pred C-------------CchHHHHHHHHHhccCCEEEEE
Confidence 1 2244677888999999998754
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.04 E-value=0.083 Score=39.82 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=42.0
Q ss_pred CceEEEeccccc-cccCCCCeeEEEeCcchhhhccCCC---Ch----hhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 95 QLKYIKMDVRQM-DEFQTGSFDSVVDKGTLDSLLCGSN---SR----QNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 95 ~~~~~~~d~~~~-~~~~~~~fD~v~~~~~l~~~~~~~~---~~----~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..+++++|..+. ...+.++||+|++..++..-..... +. ......++.+.++|+|+|.+++..
T Consensus 4 ~~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 4 INKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SSSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 346788888764 2245678999999987652100000 01 245677888899999999998864
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=92.94 E-value=0.12 Score=40.31 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=42.4
Q ss_pred ceEE-Eeccccc-cccCCCCeeEEEeCcchhhhcc----CCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 96 LKYI-KMDVRQM-DEFQTGSFDSVVDKGTLDSLLC----GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 96 ~~~~-~~d~~~~-~~~~~~~fD~v~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..++ ++|..+. ..++.++||+|+...++..-.. ...-.......+..+.++|+|+|.+++..
T Consensus 39 ~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~ 106 (319)
T 1eg2_A 39 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 106 (319)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 5677 8998774 2245679999999987752100 00001256778888899999999998865
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.68 Score=35.89 Aligned_cols=91 Identities=14% Similarity=0.208 Sum_probs=57.6
Q ss_pred CCCCcEEEEcC--CCchhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc---c----cccCCCCee
Q 028547 46 SHHQRILIVGC--GNSAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ---M----DEFQTGSFD 115 (207)
Q Consensus 46 ~~~~~vLdiG~--G~G~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~---~----~~~~~~~fD 115 (207)
+.+++||-.|+ |.|..+..++. .|. +|+++|.+++.++.+++ +.. . .. .|..+ . .....+.+|
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~-~g~--~-~~--~d~~~~~~~~~~~~~~~~~~~d 216 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ-IGF--D-AA--FNYKTVNSLEEALKKASPDGYD 216 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH-TTC--S-EE--EETTSCSCHHHHHHHHCTTCEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh-cCC--c-EE--EecCCHHHHHHHHHHHhCCCCe
Confidence 33459999998 34666666655 456 99999999988888743 321 1 11 23322 1 011125799
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+++.+.. ...++...+.|+++|.+++..
T Consensus 217 ~vi~~~g--------------~~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 217 CYFDNVG--------------GEFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEEESSC--------------HHHHHHHHTTEEEEEEEEECC
T ss_pred EEEECCC--------------hHHHHHHHHHHhcCCEEEEEe
Confidence 9986521 124678889999999988765
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.64 E-value=1.2 Score=35.69 Aligned_cols=99 Identities=12% Similarity=0.135 Sum_probs=58.0
Q ss_pred CCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccc-ccc-cCCCCeeEEEeC
Q 028547 48 HQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDE-FQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~-~~~-~~~~~fD~v~~~ 120 (207)
+.+||-+|+|. |.++..+++. |..+|+++|.+++.++.+++.-.. .++.. |+.+ ... .....+|+|+..
T Consensus 214 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~----~vi~~~~~~~~~~i~~~t~g~g~D~vid~ 289 (404)
T 3ip1_A 214 GDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD----HVIDPTKENFVEAVLDYTNGLGAKLFLEA 289 (404)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS----EEECTTTSCHHHHHHHHTTTCCCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC----EEEcCCCCCHHHHHHHHhCCCCCCEEEEC
Confidence 34899999865 7777777775 445899999999988888765211 12211 1111 101 123479999964
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
-.-. .......++.+.+.++++|.+++...
T Consensus 290 ~g~~--------~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 290 TGVP--------QLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp SSCH--------HHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred CCCc--------HHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 2111 01222333333345599999988653
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=1.4 Score=34.00 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=58.1
Q ss_pred CcEEEEcCCC--chhhHHHHhcCCC-cEEEEeCCHHHHHHHHHHccCCCCceEEEecccc-ccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGN--SAFSEGMVDDGYE-DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~--G~~~~~l~~~~~~-~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~fD~v~~~~~l~ 124 (207)
.+|.-||+|. +.++..+.+.|+. +|+++|.+++.++.+.+.- -+.-...+..+ . -...|+|+..-..
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G----~~~~~~~~~~~~~----~~~aDvVilavp~- 104 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG----IIDEGTTSIAKVE----DFSPDFVMLSSPV- 104 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT----SCSEEESCTTGGG----GGCCSEEEECSCG-
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCC----CcchhcCCHHHHh----hccCCEEEEeCCH-
Confidence 4899999885 4556666666653 8999999998887776531 11112233333 2 1357988865332
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
......++++...++++.+++-+
T Consensus 105 ---------~~~~~vl~~l~~~l~~~~iv~d~ 127 (314)
T 3ggo_A 105 ---------RTFREIAKKLSYILSEDATVTDQ 127 (314)
T ss_dssp ---------GGHHHHHHHHHHHSCTTCEEEEC
T ss_pred ---------HHHHHHHHHHhhccCCCcEEEEC
Confidence 34567788899999998766543
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.29 Score=38.49 Aligned_cols=89 Identities=19% Similarity=0.322 Sum_probs=57.7
Q ss_pred CcEEEEcCCC-chhh-HHHH-hc-CCCcEEEEeCCHH---HHHHHHHHccCCCCceEEEecccc-----ccccCCCCeeE
Q 028547 49 QRILIVGCGN-SAFS-EGMV-DD-GYEDVVNVDISSV---VIEAMMKKYSNRPQLKYIKMDVRQ-----MDEFQTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~-~~l~-~~-~~~~v~~~D~s~~---~i~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~~fD~ 116 (207)
.+||-+|+|. |.++ ..++ +. |..+|++++.+++ .++.+++. . .... |..+ .... .+.+|+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~l-G----a~~v--~~~~~~~~~i~~~-~gg~Dv 245 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL-D----ATYV--DSRQTPVEDVPDV-YEQMDF 245 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHT-T----CEEE--ETTTSCGGGHHHH-SCCEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHc-C----Cccc--CCCccCHHHHHHh-CCCCCE
Confidence 4999999864 7777 7777 54 4534999999887 77777653 1 1222 2221 1111 237999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|+..-. ....++.+.+.|+++|.++....
T Consensus 246 vid~~g-------------~~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 246 IYEATG-------------FPKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp EEECSC-------------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred EEECCC-------------ChHHHHHHHHHHhcCCEEEEEeC
Confidence 985411 12357788899999999887653
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.53 Score=36.82 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=60.1
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccc-cccc-CCCCeeEEEe
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEF-QTGSFDSVVD 119 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~-~~~~-~~~~fD~v~~ 119 (207)
.+.+||-+|+|. |..+..+++. |..+|++++.+++.++.+++.-.. .++.. ++.+ .... ....+|+|+.
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~----~~~~~~~~~~~~~v~~~~~g~g~D~vid 242 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGAD----YVINPFEEDVVKEVMDITDGNGVDVFLE 242 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCS----EEECTTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC----EEECCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 335999999964 7777777765 444899999999888888754211 12211 1111 1001 2346999996
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
... ....++.+.+.|+++|.++....
T Consensus 243 ~~g-------------~~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 243 FSG-------------APKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp CSC-------------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred CCC-------------CHHHHHHHHHHHhcCCEEEEEcc
Confidence 421 13457788899999999887653
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=92.47 E-value=0.19 Score=39.57 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=58.1
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccc-cc-cccCCCCeeEEEeCcc
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR-QM-DEFQTGSFDSVVDKGT 122 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~-~~-~~~~~~~fD~v~~~~~ 122 (207)
.+.+||-+|+|. |.++..+++. |. +|++++.+++.++.+++. .. -.++..+-. +. .... +.+|+|+....
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~l-Ga---~~v~~~~~~~~~~~~~~-~~~D~vid~~g 252 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM-GA---DHYIATLEEGDWGEKYF-DTFDLIVVCAS 252 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH-TC---SEEEEGGGTSCHHHHSC-SCEEEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHc-CC---CEEEcCcCchHHHHHhh-cCCCEEEECCC
Confidence 335999999864 7777777764 55 799999988888888763 21 122222111 11 0111 57999996422
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
-. ....++.+.+.|+++|.++....
T Consensus 253 ~~-----------~~~~~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 253 SL-----------TDIDFNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp CS-----------TTCCTTTGGGGEEEEEEEEECCC
T ss_pred CC-----------cHHHHHHHHHHhcCCCEEEEecC
Confidence 10 01124556789999999887553
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.14 Score=40.01 Aligned_cols=91 Identities=11% Similarity=0.136 Sum_probs=58.9
Q ss_pred CCCcEEEEcC--CCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc---c----cccCCCCeeE
Q 028547 47 HHQRILIVGC--GNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ---M----DEFQTGSFDS 116 (207)
Q Consensus 47 ~~~~vLdiG~--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~---~----~~~~~~~fD~ 116 (207)
.+++||-.|+ |.|..+..+++. |. +|++++.+++.++.+++.+.. ..++ |..+ . .....+.+|+
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~g~---~~~~--d~~~~~~~~~~~~~~~~~~~d~ 228 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKFGF---DDAF--NYKEESDLTAALKRCFPNGIDI 228 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTSCC---SEEE--ETTSCSCSHHHHHHHCTTCEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCC---ceEE--ecCCHHHHHHHHHHHhCCCCcE
Confidence 3459999997 347777777664 55 899999999888888744421 1122 2221 1 0011256999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+.... ...++...+.|+++|.+++..
T Consensus 229 vi~~~g--------------~~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 229 YFENVG--------------GKMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp EEESSC--------------HHHHHHHHTTEEEEEEEEECC
T ss_pred EEECCC--------------HHHHHHHHHHHhcCCEEEEEc
Confidence 986521 135788899999999988754
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.42 Score=37.24 Aligned_cols=94 Identities=13% Similarity=0.191 Sum_probs=57.8
Q ss_pred CCCCcEEEEcCCC--chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc----cc-cCCCCeeEE
Q 028547 46 SHHQRILIVGCGN--SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----DE-FQTGSFDSV 117 (207)
Q Consensus 46 ~~~~~vLdiG~G~--G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~----~~-~~~~~fD~v 117 (207)
+.+.+||-.|+|+ |..+..+++. |. +|++++.+++.++.+++.-.. .++...-.+. .. .....+|+|
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~----~~~~~~~~~~~~~~~~~~~~~g~Dvv 217 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAA----YVIDTSTAPLYETVMELTNGIGADAA 217 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCS----EEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCc----EEEeCCcccHHHHHHHHhCCCCCcEE
Confidence 3445999999874 6777777664 56 999999998888888764211 2222111111 00 123479999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+....- .. .....+.|+++|.++....
T Consensus 218 id~~g~-------------~~-~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 218 IDSIGG-------------PD-GNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp EESSCH-------------HH-HHHHHHTEEEEEEEEECCC
T ss_pred EECCCC-------------hh-HHHHHHHhcCCCEEEEEee
Confidence 964221 11 2334589999999987654
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.36 Score=37.76 Aligned_cols=94 Identities=19% Similarity=0.402 Sum_probs=58.4
Q ss_pred CCCcEEEEcCCC--chhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc----ccccCC-CCeeEE
Q 028547 47 HHQRILIVGCGN--SAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ----MDEFQT-GSFDSV 117 (207)
Q Consensus 47 ~~~~vLdiG~G~--G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~----~~~~~~-~~fD~v 117 (207)
.+++||-.|+|+ |..+..+++. |. +|+++|.+++.++.+++. .. . .++...-.+ ...... +.+|+|
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~-g~--~-~~~~~~~~~~~~~~~~~~~~~~~d~v 244 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA-GA--D-YVINASMQDPLAEIRRITESKGVDAV 244 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH-TC--S-EEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh-CC--C-EEecCCCccHHHHHHHHhcCCCceEE
Confidence 345999999984 5556565554 66 899999999888888653 21 1 122111011 111122 479999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+.... ....++.+.+.|+++|.++....
T Consensus 245 i~~~g-------------~~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 245 IDLNN-------------SEKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp EESCC-------------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred EECCC-------------CHHHHHHHHHHHhcCCEEEEECC
Confidence 96521 13357778899999999887553
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.25 E-value=1.3 Score=33.26 Aligned_cols=108 Identities=18% Similarity=0.212 Sum_probs=65.2
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCC------------HHHHHHHHHHcc-CCCCceEEEecccccccc--
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDIS------------SVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF-- 109 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s------------~~~i~~~~~~~~-~~~~~~~~~~d~~~~~~~-- 109 (207)
+++||--|++.| .++..+++.|+ +|+.+|.+ .+.++.+..... ...++.++.+|+.+....
T Consensus 10 gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 88 (287)
T 3pxx_A 10 DKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR 88 (287)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 347888887766 45566677777 89999876 555555544333 225788899998875211
Q ss_pred -------CCCCeeEEEeCcchhhhccCCCChhhH-----------HHHHHHHHHhcCCCcEEEEEE
Q 028547 110 -------QTGSFDSVVDKGTLDSLLCGSNSRQNA-----------TQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 110 -------~~~~fD~v~~~~~l~~~~~~~~~~~~~-----------~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.-+..|+++.+..+..... ..+.+++ -.+++.+.+.++.+|.++.+.
T Consensus 89 ~~~~~~~~~g~id~lv~nAg~~~~~~-~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 89 ELANAVAEFGKLDVVVANAGICPLGA-HLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCT-TCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHHHcCCCCEEEECCCcCcccC-cCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 1136899988755432211 1122222 234455566777788877655
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=92.17 E-value=0.52 Score=36.36 Aligned_cols=91 Identities=10% Similarity=0.152 Sum_probs=59.2
Q ss_pred cEEEEcC-C-CchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe-ccccccccCCCCeeEEEeCcchhhh
Q 028547 50 RILIVGC-G-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 50 ~vLdiG~-G-~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+||-.|+ | .|.++..+++....+|++++.+++..+.+++.-.. .++.. +.........+.+|+|+.. .
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~----~vi~~~~~~~~~~~~~~~~d~v~d~-----~ 219 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGAN----RILSRDEFAESRPLEKQLWAGAIDT-----V 219 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCS----EEEEGGGSSCCCSSCCCCEEEEEES-----S
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC----EEEecCCHHHHHhhcCCCccEEEEC-----C
Confidence 5999997 3 47888888775333999999999888888764211 12211 1111111234579998853 1
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+ ...++.+.+.|+++|.++....
T Consensus 220 -----g----~~~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 220 -----G----DKVLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp -----C----HHHHHHHHHTEEEEEEEEECCC
T ss_pred -----C----cHHHHHHHHHHhcCCEEEEEec
Confidence 1 1268888999999999987653
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=92.17 E-value=0.65 Score=32.95 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=55.8
Q ss_pred CCCcEEEEcC--CCchhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc------cc-cCCCCeeE
Q 028547 47 HHQRILIVGC--GNSAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM------DE-FQTGSFDS 116 (207)
Q Consensus 47 ~~~~vLdiG~--G~G~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~------~~-~~~~~fD~ 116 (207)
.+++||..|+ |.|..+..++. .|. +|+++|.+++..+.+++. .. . .. .|..+. .. .....+|+
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~-g~--~-~~--~d~~~~~~~~~~~~~~~~~~~D~ 110 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRL-GV--E-YV--GDSRSVDFADEILELTDGYGVDV 110 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTT-CC--S-EE--EETTCSTHHHHHHHHTTTCCEEE
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc-CC--C-EE--eeCCcHHHHHHHHHHhCCCCCeE
Confidence 3459999995 34665555554 466 899999998877766542 11 1 11 232221 00 12346999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
++.+.. ...++.+.+.|+++|.++...
T Consensus 111 vi~~~g--------------~~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 111 VLNSLA--------------GEAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp EEECCC--------------THHHHHHHHTEEEEEEEEECS
T ss_pred EEECCc--------------hHHHHHHHHHhccCCEEEEEc
Confidence 996421 135678889999999988755
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.11 E-value=2.1 Score=29.81 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=55.8
Q ss_pred CcEEEEcCCC-chh-hHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc---ccc-CCCCeeEEEeCc
Q 028547 49 QRILIVGCGN-SAF-SEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM---DEF-QTGSFDSVVDKG 121 (207)
Q Consensus 49 ~~vLdiG~G~-G~~-~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~---~~~-~~~~fD~v~~~~ 121 (207)
.+|+-+|+|. |.. +..+.+. |. +|+++|.+++.++.+++. .+.++.+|..+. ... ....+|+|+..-
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~-----g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~ 113 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSE-----GRNVISGDATDPDFWERILDTGHVKLVLLAM 113 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHT-----TCCEEECCTTCHHHHHTBCSCCCCCEEEECC
T ss_pred CcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHC-----CCCEEEcCCCCHHHHHhccCCCCCCEEEEeC
Confidence 3899999875 433 3344455 66 899999999887776542 355667776553 111 245689888631
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.- ......+-...+.+.|++.++...
T Consensus 114 ~~----------~~~~~~~~~~~~~~~~~~~ii~~~ 139 (183)
T 3c85_A 114 PH----------HQGNQTALEQLQRRNYKGQIAAIA 139 (183)
T ss_dssp SS----------HHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CC----------hHHHHHHHHHHHHHCCCCEEEEEE
Confidence 11 122222333556667777766654
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.43 Score=37.23 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=59.1
Q ss_pred CCCCCcEEEEcCCC-chhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCCCCceEEE---ecccc-ccc-cCCCCeeEE
Q 028547 45 PSHHQRILIVGCGN-SAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK---MDVRQ-MDE-FQTGSFDSV 117 (207)
Q Consensus 45 ~~~~~~vLdiG~G~-G~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~---~d~~~-~~~-~~~~~fD~v 117 (207)
.+++.+||-+|+|. |.++..+++ .+..+|+++|.+++-++.+++.-.. .++. .|..+ ... .....+|.+
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~----~~i~~~~~~~~~~v~~~t~g~g~d~~ 236 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD----VTINSGDVNPVDEIKKITGGLGVQSA 236 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS----EEEEC-CCCHHHHHHHHTTSSCEEEE
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe----EEEeCCCCCHHHHhhhhcCCCCceEE
Confidence 34445999999986 344444544 4445999999999888877764322 2221 12211 111 123457777
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+... .-...+....+.|+++|.+++...
T Consensus 237 ~~~~-------------~~~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 237 IVCA-------------VARIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp EECC-------------SCHHHHHHHHHTEEEEEEEEECCC
T ss_pred EEec-------------cCcchhheeheeecCCceEEEEec
Confidence 7431 114457788899999999887653
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=92.05 E-value=0.78 Score=34.12 Aligned_cols=107 Identities=13% Similarity=0.308 Sum_probs=66.4
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCee
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++++|--|++.| .++..+++.|+ +|+.++.+++.++...+... .++.++.+|+.+.... ..+..|
T Consensus 8 gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 84 (255)
T 4eso_A 8 GKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFG--PRVHALRSDIADLNEIAVLGAAAGQTLGAID 84 (255)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHHHHHSSEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 347888887766 45566677787 99999999988777766553 3678888998875211 124789
Q ss_pred EEEeCcchhhhc-cCCCChhhHH-----------HHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLL-CGSNSRQNAT-----------QMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~-~~~~~~~~~~-----------~~l~~~~~~L~pgG~~~~~~ 157 (207)
+++.+....... ....+.+++. .+.+.+.+.++++|.++.+.
T Consensus 85 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 85 LLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 988765432210 0011222222 23445556667778877655
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.78 Score=30.55 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=45.0
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc---cCCCCeeEEEeC
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDK 120 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~v~~~ 120 (207)
+|+-+|+|. | .++..+.+.|. +|+++|.+++.++.+++. ...++.+|..+... .....+|.|+..
T Consensus 8 ~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~-----~~~~~~gd~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 8 EYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDE-----GFDAVIADPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-----TCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHC-----CCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence 799999865 3 23344455567 999999999888777653 46778888877421 124578988864
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=1.6 Score=32.41 Aligned_cols=108 Identities=12% Similarity=0.183 Sum_probs=63.9
Q ss_pred CcEEEEcCC--Cc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEecccccccc---------CCC
Q 028547 49 QRILIVGCG--NS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEF---------QTG 112 (207)
Q Consensus 49 ~~vLdiG~G--~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~---------~~~ 112 (207)
+++|-.|++ .| .++..+++.|+ +|+.++.++...+.+++..... .++.++.+|+.+.... ..+
T Consensus 8 k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (266)
T 3oig_A 8 RNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVG 86 (266)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHHS
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 478888876 44 45667777787 8999987765444444333221 3688999999885211 113
Q ss_pred CeeEEEeCcchhhh-----ccCCCChhhHH-----------HHHHHHHHhcCCCcEEEEEE
Q 028547 113 SFDSVVDKGTLDSL-----LCGSNSRQNAT-----------QMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 113 ~fD~v~~~~~l~~~-----~~~~~~~~~~~-----------~~l~~~~~~L~pgG~~~~~~ 157 (207)
..|+++.+..+... .....+.+... .+++.+.+.++++|.++.+.
T Consensus 87 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 87 VIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp CCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred CeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 68988876543220 00111222222 34556667778888887766
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=1.5 Score=40.74 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=57.7
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc--------------ccC-CC
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD--------------EFQ-TG 112 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~--------------~~~-~~ 112 (207)
.+++|+-||.|.++.-+.+.|+ ..+.++|+++.+.+..+.+++ ...++..|+.++. .++ .+
T Consensus 852 l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p---~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp~~~ 928 (1330)
T 3av4_A 852 LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP---GTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKG 928 (1330)
T ss_dssp EEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT---TSEEECSCHHHHHHHHTTTCSBCSSCCBCCCTT
T ss_pred ceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC---CCcEeeccHHHHhHhhhccchhhhhhhhccccC
Confidence 3899999999999999988886 568899999999999888874 3455555554220 111 24
Q ss_pred CeeEEEeCcchhhhc
Q 028547 113 SFDSVVDKGTLDSLL 127 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~ 127 (207)
.+|+|+...+.+.++
T Consensus 929 ~vDvl~GGpPCQ~FS 943 (1330)
T 3av4_A 929 DVEMLCGGPPCQGFS 943 (1330)
T ss_dssp TCSEEEECCCCTTTC
T ss_pred ccceEEecCCCcccc
Confidence 689999998888774
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=91.60 E-value=0.26 Score=38.02 Aligned_cols=87 Identities=22% Similarity=0.311 Sum_probs=56.1
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
+.+.+||-.|+|. |.++..+++. |. +|++++ +++.++.+++.-.. .++ .| .... ...+|+|+..-
T Consensus 141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~----~v~-~d---~~~v-~~g~Dvv~d~~-- 207 (315)
T 3goh_A 141 TKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVR----HLY-RE---PSQV-TQKYFAIFDAV-- 207 (315)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEE----EEE-SS---GGGC-CSCEEEEECC---
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCC----EEE-cC---HHHh-CCCccEEEECC--
Confidence 3345999999964 7777777775 55 999999 88888888764211 222 23 2122 56899998531
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. ...+....+.|+++|.++...
T Consensus 208 g------------~~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 208 N------------SQNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp ------------------TTGGGEEEEEEEEEEC
T ss_pred C------------chhHHHHHHHhcCCCEEEEEe
Confidence 1 012355689999999988764
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=91.58 E-value=1.9 Score=32.70 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=65.0
Q ss_pred CCcEEEEcCCCc-----hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCC
Q 028547 48 HQRILIVGCGNS-----AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 48 ~~~vLdiG~G~G-----~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
++++|-.|++.| .++..+++.|+ +|+.++.++...+.+++......++.++.+|+.+.... .-+.
T Consensus 31 gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 109 (293)
T 3grk_A 31 GKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWGK 109 (293)
T ss_dssp TCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 347888887633 45566777787 89999988754444433322224678888998875211 1247
Q ss_pred eeEEEeCcchhhh-----ccCCCChhh-----------HHHHHHHHHHhcCCCcEEEEEEe
Q 028547 114 FDSVVDKGTLDSL-----LCGSNSRQN-----------ATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 114 fD~v~~~~~l~~~-----~~~~~~~~~-----------~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.|+++.+..+... .....+.++ ...+++.+.+.++++|.++.+..
T Consensus 110 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 110 LDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp CSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred CCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 8999876543310 001112222 23345566677778888877653
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=0.36 Score=37.95 Aligned_cols=93 Identities=24% Similarity=0.303 Sum_probs=56.8
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe-ccccccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~fD~v~~~~~l 123 (207)
.+.+||-+|+|. |.++..+++. |. +|++++.+++.++.+++.+... .++.. +....... .+.+|+|+..-.-
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~-~~g~D~vid~~g~ 254 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGAD---DYVIGSDQAKMSEL-ADSLDYVIDTVPV 254 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCS---CEEETTCHHHHHHS-TTTEEEEEECCCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCc---eeeccccHHHHHHh-cCCCCEEEECCCC
Confidence 445899999864 6777777664 55 8999999988777776444321 12211 11111111 2469999864211
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. ..++...+.|+++|.++...
T Consensus 255 ~-------------~~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 255 H-------------HALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp C-------------CCSHHHHTTEEEEEEEEECS
T ss_pred h-------------HHHHHHHHHhccCCEEEEeC
Confidence 1 12455678999999988754
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.48 E-value=2.4 Score=31.90 Aligned_cols=73 Identities=21% Similarity=0.344 Sum_probs=51.1
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCee
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++++|-.|++.| .++..+++.|+ +|+.+|.+++..+...+.+. .++.++.+|+.+.... .-+..|
T Consensus 29 gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 105 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIG--CGAAACRVDVSDEQQIIAMVDACVAAFGGVD 105 (277)
T ss_dssp TCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHC--SSCEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcC--CcceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 347787787766 45566677787 99999999887777666552 3678889998875211 123689
Q ss_pred EEEeCcch
Q 028547 116 SVVDKGTL 123 (207)
Q Consensus 116 ~v~~~~~l 123 (207)
+++.+..+
T Consensus 106 ~lvnnAg~ 113 (277)
T 3gvc_A 106 KLVANAGV 113 (277)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99877554
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=0.64 Score=36.71 Aligned_cols=94 Identities=24% Similarity=0.353 Sum_probs=56.8
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe-ccccccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~fD~v~~~~~l 123 (207)
.+.+||-+|+|. |..+..+++. |. +|++++.+++.++.+++.+.. -.++.. +....... .+.+|+|+..-..
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lGa---~~v~~~~~~~~~~~~-~~~~D~vid~~g~ 261 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFGA---DSFLVSRDQEQMQAA-AGTLDGIIDTVSA 261 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSCC---SEEEETTCHHHHHHT-TTCEEEEEECCSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCC---ceEEeccCHHHHHHh-hCCCCEEEECCCc
Confidence 445899999864 6666666664 45 899999998877777654432 122211 11111111 2479999964221
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
. ..++...+.|+++|.++....
T Consensus 262 ~-------------~~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 262 V-------------HPLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp C-------------CCSHHHHHHEEEEEEEEECCC
T ss_pred H-------------HHHHHHHHHHhcCCEEEEEcc
Confidence 1 124556788999999887653
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.23 E-value=0.33 Score=38.02 Aligned_cols=92 Identities=16% Similarity=0.274 Sum_probs=58.0
Q ss_pred CCCcEEEEcC--CCchhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc---c----cccCCCCeeE
Q 028547 47 HHQRILIVGC--GNSAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ---M----DEFQTGSFDS 116 (207)
Q Consensus 47 ~~~~vLdiG~--G~G~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~---~----~~~~~~~fD~ 116 (207)
.+++||..|+ |.|..+..+++ .|. +|++++.+++.++.+++. .. . .+ .|..+ . .....+.+|+
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~-g~--~-~~--~d~~~~~~~~~~~~~~~~~~~D~ 241 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSI-GG--E-VF--IDFTKEKDIVGAVLKATDGGAHG 241 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHT-TC--C-EE--EETTTCSCHHHHHHHHHTSCEEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHc-CC--c-eE--EecCccHhHHHHHHHHhCCCCCE
Confidence 3459999998 34666666665 455 999999888777776652 11 1 12 23321 1 0011227999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|+.... ....++.+.+.|+++|.++....
T Consensus 242 vi~~~g-------------~~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 242 VINVSV-------------SEAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp EEECSS-------------CHHHHHHHTTSEEEEEEEEECCC
T ss_pred EEECCC-------------cHHHHHHHHHHHhcCCEEEEEeC
Confidence 986522 12457888899999999887653
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.88 E-value=1.7 Score=33.83 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=58.2
Q ss_pred CCcEEEEcC--CCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc------cc-cCCCCeeEE
Q 028547 48 HQRILIVGC--GNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM------DE-FQTGSFDSV 117 (207)
Q Consensus 48 ~~~vLdiG~--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~------~~-~~~~~fD~v 117 (207)
+.+||-.|+ |.|..+..+++. |. +|++++.+++.++.+++. .. . .++ |..+. .. .....+|+|
T Consensus 167 g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~-ga--~-~~~--d~~~~~~~~~~~~~~~~~~~d~v 239 (343)
T 2eih_A 167 GDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKAL-GA--D-ETV--NYTHPDWPKEVRRLTGGKGADKV 239 (343)
T ss_dssp TCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH-TC--S-EEE--ETTSTTHHHHHHHHTTTTCEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc-CC--C-EEE--cCCcccHHHHHHHHhCCCCceEE
Confidence 359999998 457777777664 55 999999999888888653 21 1 122 22211 00 123479999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+.... . ..++.+.+.|+++|.++...
T Consensus 240 i~~~g-~-------------~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 240 VDHTG-A-------------LYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp EESSC-S-------------SSHHHHHHHEEEEEEEEESS
T ss_pred EECCC-H-------------HHHHHHHHhhccCCEEEEEe
Confidence 96532 1 23677789999999887754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.75 E-value=3.5 Score=32.71 Aligned_cols=94 Identities=15% Similarity=0.083 Sum_probs=61.1
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--C--CceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--P--QLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~--~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.+||.++.+.|.+++.++..+ ++.+.=|-......+.++... . .+.+. +..+. ....+|+|+..-+
T Consensus 40 ~~~~~~~d~~gal~~~~~~~~---~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~--~~~~~---~~~~~~~v~~~lp-- 109 (375)
T 4dcm_A 40 GPVLILNDAFGALSCALAEHK---PYSIGDSYISELATRENLRLNGIDESSVKFL--DSTAD---YPQQPGVVLIKVP-- 109 (375)
T ss_dssp SCEEEECCSSSHHHHHTGGGC---CEEEESCHHHHHHHHHHHHHTTCCGGGSEEE--ETTSC---CCSSCSEEEEECC--
T ss_pred CCEEEECCCCCHHHHhhccCC---ceEEEhHHHHHHHHHHHHHHcCCCccceEec--ccccc---cccCCCEEEEEcC--
Confidence 389999999999999987653 344432444444444544321 1 23433 22222 3467999886422
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.........+..+...|++|+.+++..-
T Consensus 110 ------k~~~~l~~~L~~l~~~l~~~~~i~~~g~ 137 (375)
T 4dcm_A 110 ------KTLALLEQQLRALRKVVTSDTRIIAGAK 137 (375)
T ss_dssp ------SCHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred ------CCHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence 2336788889999999999999987663
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=90.60 E-value=0.42 Score=37.30 Aligned_cols=94 Identities=11% Similarity=0.169 Sum_probs=58.3
Q ss_pred CCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccc-ccccCCCCeeEEEeC
Q 028547 47 HHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEFQTGSFDSVVDK 120 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~-~~~~~~~~fD~v~~~ 120 (207)
.+.+||-+|+|. |..+..+++. |..+|++++.+++.++.+++. .. .++.. ++.+ ........+|+|+..
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~----~v~~~~~~~~~~~~~~~~~~g~D~vid~ 238 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-AD----RLVNPLEEDLLEVVRRVTGSGVEVLLEF 238 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CS----EEECTTTSCHHHHHHHHHSSCEEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HH----hccCcCccCHHHHHHHhcCCCCCEEEEC
Confidence 334999999854 7777777775 444899999998777666543 21 11111 1111 000113469999864
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.. ....++...+.|+++|.++....
T Consensus 239 ~g-------------~~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 239 SG-------------NEAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp SC-------------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred CC-------------CHHHHHHHHHHHhcCCEEEEEec
Confidence 21 13457788899999999887653
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=90.38 E-value=2.1 Score=33.68 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=59.2
Q ss_pred CCCCcEEEEc--CCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccc-ccccCCCCeeEEE
Q 028547 46 SHHQRILIVG--CGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEFQTGSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG--~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~-~~~~~~~~fD~v~ 118 (207)
+.+.+||-.| .|.|..+..+++. |. +|++++.+++.++.+++. .. -.++.. ++.+ ........+|+|+
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~-Ga---~~~~~~~~~~~~~~~~~~~~~g~D~vi 236 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSL-GC---DRPINYKTEPVGTVLKQEYPEGVDVVY 236 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT-TC---SEEEETTTSCHHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHc-CC---cEEEecCChhHHHHHHHhcCCCCCEEE
Confidence 3345999999 3458888777765 55 899999999888888763 21 122221 1111 1011235799998
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.... ...++.+.+.|+++|.++...
T Consensus 237 d~~g--------------~~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 237 ESVG--------------GAMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp ECSC--------------THHHHHHHHHEEEEEEEEECC
T ss_pred ECCC--------------HHHHHHHHHHHhcCCEEEEEe
Confidence 6421 135778889999999988755
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=90.30 E-value=1.1 Score=34.69 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=58.8
Q ss_pred CCCcEEEEcC--CCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc----cc-cCCCCeeEEE
Q 028547 47 HHQRILIVGC--GNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----DE-FQTGSFDSVV 118 (207)
Q Consensus 47 ~~~~vLdiG~--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~----~~-~~~~~fD~v~ 118 (207)
.+.+||-.|+ |.|..+..+++. |. +|++++.+++.++.+++.- . -.++..+-.+. .. .....+|+|+
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g-a---~~~~~~~~~~~~~~~~~~~~~~g~D~vi 222 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEYG-A---EYLINASKEDILRQVLKFTNGKGVDASF 222 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTT-C---SEEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC-C---cEEEeCCCchHHHHHHHHhCCCCceEEE
Confidence 3459999994 346777777665 55 9999999998888776632 1 12222111111 00 1235799999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
....- ..++.+.+.|+++|.++....
T Consensus 223 d~~g~--------------~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 223 DSVGK--------------DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp ECCGG--------------GGHHHHHHHEEEEEEEEECCC
T ss_pred ECCCh--------------HHHHHHHHHhccCCEEEEEcC
Confidence 64221 346778899999999987653
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=89.92 E-value=1.7 Score=33.50 Aligned_cols=93 Identities=10% Similarity=0.015 Sum_probs=59.3
Q ss_pred CCCcEEEEcC-C-CchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc-----cccCCCCeeEEE
Q 028547 47 HHQRILIVGC-G-NSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-----DEFQTGSFDSVV 118 (207)
Q Consensus 47 ~~~~vLdiG~-G-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~fD~v~ 118 (207)
++.+||-.|+ | .|..+..+++. |. +|++++.+++.++.+++.-.. .++..+-.+. .......+|+|+
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~----~~~~~~~~~~~~~~~~~~~~~g~Dvvi 214 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAW----ETIDYSHEDVAKRVLELTDGKKCPVVY 214 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCS----EEEETTTSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCC----EEEeCCCccHHHHHHHHhCCCCceEEE
Confidence 3459999983 3 47777777664 55 999999999988888764211 2222111111 001235799999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
....- ..+....+.|+++|.++....
T Consensus 215 d~~g~--------------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 215 DGVGQ--------------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp ESSCG--------------GGHHHHHTTEEEEEEEEECCC
T ss_pred ECCCh--------------HHHHHHHHHhcCCCEEEEEec
Confidence 64221 246677899999999988654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=89.85 E-value=2.9 Score=27.32 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=52.8
Q ss_pred CcEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc---cCCCCeeEEEeCcch
Q 028547 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~v~~~~~l 123 (207)
.+|+-+|+|. | .++..+.+.+. +|+++|.+++.++...+.. .+.++.+|..+... .....+|+|+..-.-
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~----~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~ 79 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI----DALVINGDCTKIKTLEDAGIEDADMYIAVTGK 79 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhc----CcEEEEcCCCCHHHHHHcCcccCCEEEEeeCC
Confidence 3788888864 3 22334445565 8999999998777665442 34566666654311 123568988865221
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
......+..+.+.+.++ .++.
T Consensus 80 ----------~~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 80 ----------EEVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp ----------HHHHHHHHHHHHHTTCC-CEEE
T ss_pred ----------chHHHHHHHHHHHcCCC-EEEE
Confidence 22234455566667775 4443
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.45 E-value=2.7 Score=32.25 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=54.6
Q ss_pred CCCCcEEEEc-CCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc-ccccCCCCeeEEEeCcc
Q 028547 46 SHHQRILIVG-CGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-MDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 46 ~~~~~vLdiG-~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~fD~v~~~~~ 122 (207)
+++.+||-.| +|. |.++..+++....++++++ +++..+.+++.-.. .++..+-.+ .. .....+|+|+..-.
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa~----~~i~~~~~~~~~-~~~~g~D~v~d~~g 224 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGAE----QCINYHEEDFLL-AISTPVDAVIDLVG 224 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTCS----EEEETTTSCHHH-HCCSCEEEEEESSC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCCC----EEEeCCCcchhh-hhccCCCEEEECCC
Confidence 3445999986 554 8888888775333888887 55556666653211 222221111 11 11257999986411
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
-.. +....+.|+++|.++...
T Consensus 225 -------------~~~-~~~~~~~l~~~G~iv~~g 245 (321)
T 3tqh_A 225 -------------GDV-GIQSIDCLKETGCIVSVP 245 (321)
T ss_dssp -------------HHH-HHHHGGGEEEEEEEEECC
T ss_pred -------------cHH-HHHHHHhccCCCEEEEeC
Confidence 122 377889999999988754
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=89.37 E-value=1.6 Score=34.00 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=58.4
Q ss_pred CCCcEEEEcC--CCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec--ccc-ccc-cCCCCeeEEEe
Q 028547 47 HHQRILIVGC--GNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD--VRQ-MDE-FQTGSFDSVVD 119 (207)
Q Consensus 47 ~~~~vLdiG~--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d--~~~-~~~-~~~~~fD~v~~ 119 (207)
.+.+||-.|+ |.|..+..+++. |. +|++++.+++.++.+++.-. -.++..+ +.+ ... .....+|+|+.
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga----~~v~~~~~~~~~~v~~~~~~~g~Dvvid 233 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGA----DIVLPLEEGWAKAVREATGGAGVDMVVD 233 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTC----SEEEESSTTHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCC----cEEecCchhHHHHHHHHhCCCCceEEEE
Confidence 3459999997 347777777765 55 99999998888888776421 1222222 111 111 12347999996
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
...- ..+..+.+.|+++|.++....
T Consensus 234 ~~g~--------------~~~~~~~~~l~~~G~iv~~G~ 258 (342)
T 4eye_A 234 PIGG--------------PAFDDAVRTLASEGRLLVVGF 258 (342)
T ss_dssp SCC----------------CHHHHHHTEEEEEEEEEC--
T ss_pred CCch--------------hHHHHHHHhhcCCCEEEEEEc
Confidence 4211 146778899999999987653
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=89.36 E-value=3.7 Score=33.08 Aligned_cols=92 Identities=20% Similarity=0.235 Sum_probs=60.9
Q ss_pred cEEEEcCCC-chhh-HHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc---ccCCCCeeEEEeCcchh
Q 028547 50 RILIVGCGN-SAFS-EGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~G~-G~~~-~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~fD~v~~~~~l~ 124 (207)
+|+-+|+|. |... ..|.+.|. .|+++|.+++.++.+++. .+.++.+|..+.. ...-...|+|++.- .
T Consensus 6 ~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~-----g~~vi~GDat~~~~L~~agi~~A~~viv~~--~ 77 (413)
T 3l9w_A 6 RVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKF-----GMKVFYGDATRMDLLESAGAAKAEVLINAI--D 77 (413)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHT-----TCCCEESCTTCHHHHHHTTTTTCSEEEECC--S
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhC-----CCeEEEcCCCCHHHHHhcCCCccCEEEECC--C
Confidence 799999864 4333 33344566 999999999999888753 4678889988752 12346789888641 1
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.......+-...+.+.|+..++...
T Consensus 78 --------~~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 78 --------DPQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp --------SHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred --------ChHHHHHHHHHHHHhCCCCeEEEEE
Confidence 1344445556667778877666654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.35 E-value=4.6 Score=29.00 Aligned_cols=91 Identities=16% Similarity=0.186 Sum_probs=55.8
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc---cCCCCeeEEEeCcchh
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~v~~~~~l~ 124 (207)
+|+-+|+|. | .++..+.+.+. +|+++|.+++.++...+.. ...++.+|..+... ..-...|+|++.-.
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~----~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~-- 74 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKL----KATIIHGDGSHKEILRDAEVSKNDVVVILTP-- 74 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHS----SSEEEESCTTSHHHHHHHTCCTTCEEEECCS--
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHc----CCeEEEcCCCCHHHHHhcCcccCCEEEEecC--
Confidence 577788753 2 23334444566 9999999998887765543 46788888887421 13457898886421
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
.+.....+..+.+.+.+...++.
T Consensus 75 --------~d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 75 --------RDEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp --------CHHHHHHHHHHHHHTSCCCEEEE
T ss_pred --------CcHHHHHHHHHHHHHcCCCeEEE
Confidence 13334455555666666555554
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=89.31 E-value=1.9 Score=32.82 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=63.1
Q ss_pred CcEEEEcCCC--c---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCe
Q 028547 49 QRILIVGCGN--S---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 49 ~~vLdiG~G~--G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
+++|-.|+++ | .++..+++.|+ +|+.++.++...+...+.......+.++.+|+.+.... .-+..
T Consensus 31 k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 109 (296)
T 3k31_A 31 KKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGSL 109 (296)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4788888754 4 35666777787 89999988754444333222223568889998875211 11468
Q ss_pred eEEEeCcchhhh-----ccCCCChhh-----------HHHHHHHHHHhcCCCcEEEEEEe
Q 028547 115 DSVVDKGTLDSL-----LCGSNSRQN-----------ATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 115 D~v~~~~~l~~~-----~~~~~~~~~-----------~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|+++.+..+... .....+.++ ...+++.+.+.++.+|.++.+..
T Consensus 110 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 110 DFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp SEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred CEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 999877543211 001112222 22344555667777888877653
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.28 E-value=5.4 Score=29.64 Aligned_cols=72 Identities=17% Similarity=0.257 Sum_probs=48.9
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
+++|-.|++.| .++..+++.|+ +|+.++.+++.++...+.+. .++.++.+|+.+.... .-+..|+
T Consensus 7 k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~ 83 (263)
T 2a4k_A 7 KTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALE--AEAIAVVADVSDPKAVEAVFAEALEEFGRLHG 83 (263)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCC--SSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--CceEEEEcCCCCHHHHHHHHHHHHHHcCCCcE
Confidence 37787887665 45556666777 99999999887776655543 3677888898875211 1136799
Q ss_pred EEeCcch
Q 028547 117 VVDKGTL 123 (207)
Q Consensus 117 v~~~~~l 123 (207)
++.+...
T Consensus 84 lvnnAg~ 90 (263)
T 2a4k_A 84 VAHFAGV 90 (263)
T ss_dssp EEEGGGG
T ss_pred EEECCCC
Confidence 9876544
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=89.16 E-value=2.1 Score=34.81 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=58.8
Q ss_pred CCCcEEEEcC-C-CchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cc------------------
Q 028547 47 HHQRILIVGC-G-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DV------------------ 103 (207)
Q Consensus 47 ~~~~vLdiG~-G-~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~------------------ 103 (207)
.+.+||-+|+ | .|.++..+++....++++++.+++-++.+++.-.. .++.. |.
T Consensus 228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~----~vi~~~~~d~~~~~~~~~~~~~~~~~~~ 303 (456)
T 3krt_A 228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAE----AIIDRNAEGYRFWKDENTQDPKEWKRFG 303 (456)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCC----EEEETTTTTCCSEEETTEECHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCc----EEEecCcCcccccccccccchHHHHHHH
Confidence 3348999997 4 47777777775333889999899888888664211 11111 00
Q ss_pred ccccc-cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 104 RQMDE-FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 104 ~~~~~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..... .....+|+|+.... ...+....+.|+++|.++...
T Consensus 304 ~~i~~~t~g~g~Dvvid~~G--------------~~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 304 KRIRELTGGEDIDIVFEHPG--------------RETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HHHHHHHTSCCEEEEEECSC--------------HHHHHHHHHHEEEEEEEEESC
T ss_pred HHHHHHhCCCCCcEEEEcCC--------------chhHHHHHHHhhCCcEEEEEe
Confidence 01100 12357999986411 145778889999999998754
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=89.01 E-value=0.51 Score=37.02 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=57.4
Q ss_pred CcEEEEcC--CCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc------cccCCCCeeEEEe
Q 028547 49 QRILIVGC--GNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM------DEFQTGSFDSVVD 119 (207)
Q Consensus 49 ~~vLdiG~--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~fD~v~~ 119 (207)
.+||-.|+ |.|..+..+++. |..+|++++.+++.++.+++.+.. ..+ .|..+. .....+.+|+++.
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~---~~~--~d~~~~~~~~~~~~~~~~~~d~vi~ 236 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGF---DAA--INYKKDNVAEQLRESCPAGVDVYFD 236 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCC---SEE--EETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC---ceE--EecCchHHHHHHHHhcCCCCCEEEE
Confidence 59999998 346666666654 444899999998888877664421 112 222211 0111237999986
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
... ...++.+.+.|+++|.++...
T Consensus 237 ~~G--------------~~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 237 NVG--------------GNISDTVISQMNENSHIILCG 260 (357)
T ss_dssp SCC--------------HHHHHHHHHTEEEEEEEEECC
T ss_pred CCC--------------HHHHHHHHHHhccCcEEEEEC
Confidence 521 145778889999999988754
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.01 E-value=5.5 Score=29.87 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=50.5
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCee
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++++|--|++.| .++..+++.|+ +|+.+|.+++.++...+... ..+.++.+|+.+.... .-+..|
T Consensus 27 ~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 103 (277)
T 4dqx_A 27 QRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIG--SKAFGVRVDVSSAKDAESMVEKTTAKWGRVD 103 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 347888888766 45566677777 99999999887776665543 3678888998875211 113689
Q ss_pred EEEeCcch
Q 028547 116 SVVDKGTL 123 (207)
Q Consensus 116 ~v~~~~~l 123 (207)
+++.+..+
T Consensus 104 ~lv~nAg~ 111 (277)
T 4dqx_A 104 VLVNNAGF 111 (277)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 98877554
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=89.00 E-value=3.4 Score=32.88 Aligned_cols=105 Identities=18% Similarity=0.112 Sum_probs=64.6
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeE
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
.+.+.+.......+||.++-+.|.+++.+... . +++.+.-+.......+.+-- ...+ .... ......||+
T Consensus 35 ~~~l~~~~~~~~~~~l~~n~~~g~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~---~~~~----~~~~-~~~~~~~d~ 104 (381)
T 3dmg_A 35 HDLLQKTVEPFGERALDLNPGVGWGSLPLEGR-M-AVERLETSRAAFRCLTASGL---QARL----ALPW-EAAAGAYDL 104 (381)
T ss_dssp HHHHHTTCCCCSSEEEESSCTTSTTTGGGBTT-B-EEEEEECBHHHHHHHHHTTC---CCEE----CCGG-GSCTTCEEE
T ss_pred HHHHHHHHHHhCCcEEEecCCCCccccccCCC-C-ceEEEeCcHHHHHHHHHcCC---Cccc----cCCc-cCCcCCCCE
Confidence 34444444444359999999999988887633 3 67777555554444433311 1111 1112 124578999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+..-+-+ .........+..+.+.|+|||.+++..
T Consensus 105 v~~~~Pk~------k~~~~~~~~l~~~~~~l~~g~~i~~~g 139 (381)
T 3dmg_A 105 VVLALPAG------RGTAYVQASLVAAARALRMGGRLYLAG 139 (381)
T ss_dssp EEEECCGG------GCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCcc------hhHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 99643211 112456888999999999999999876
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=88.98 E-value=3 Score=32.58 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=71.6
Q ss_pred HHHHHhhCCC--CCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHcc---------------------
Q 028547 37 APLIKLYVPS--HHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYS--------------------- 91 (207)
Q Consensus 37 ~~~l~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~--------------------- 91 (207)
...+..++.. +...|+.+|||.=.....+...+ ...++=+|. |+.++.-++.+.
T Consensus 78 D~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~ 156 (334)
T 3iei_A 78 SQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMD 156 (334)
T ss_dssp HHHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCC
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccc
Confidence 3444444432 23489999999866666665542 125666665 334333222221
Q ss_pred ----CCCCceEEEecccccc---------ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 92 ----NRPQLKYIKMDVRQMD---------EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 92 ----~~~~~~~~~~d~~~~~---------~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
...+.+++.+|+.+.. .+....-=++++-+++.++ +++....+++.+.+... +|.+++...
T Consensus 157 ~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL-----~~~~~~~ll~~ia~~f~-~~~~i~yE~ 230 (334)
T 3iei_A 157 GHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYM-----TPEQSANLLKWAANSFE-RAMFINYEQ 230 (334)
T ss_dssp TTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGS-----CHHHHHHHHHHHHHHCS-SEEEEEEEE
T ss_pred cccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCC-----CHHHHHHHHHHHHHhCC-CceEEEEec
Confidence 1246788999987731 1233445588888889988 77899999999998764 566655554
Q ss_pred C
Q 028547 159 G 159 (207)
Q Consensus 159 ~ 159 (207)
.
T Consensus 231 i 231 (334)
T 3iei_A 231 V 231 (334)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.92 E-value=2.3 Score=31.64 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=47.5
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccccC---------CCC
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQ---------TGS 113 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~~---------~~~ 113 (207)
++||-.|++.| .++..+++.|+ +|++++.+++..+...+.+.. ..++.++.+|+.+..... .+.
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 86 (267)
T 2gdz_A 8 KVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGR 86 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 37888887665 44556666777 899999988766655444432 135778888988752110 135
Q ss_pred eeEEEeCcc
Q 028547 114 FDSVVDKGT 122 (207)
Q Consensus 114 fD~v~~~~~ 122 (207)
.|+++.+..
T Consensus 87 id~lv~~Ag 95 (267)
T 2gdz_A 87 LDILVNNAG 95 (267)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCC
Confidence 798887654
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=88.81 E-value=2.4 Score=31.28 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=46.2
Q ss_pred CcEEEEcCCCc---hhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEeccccccccC---------CCCe
Q 028547 49 QRILIVGCGNS---AFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQ---------TGSF 114 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~~---------~~~f 114 (207)
++||-.|+..| .++..+++ .|+ +|++++.++...+...+.+.. ..++.++.+|+.+..... .+.+
T Consensus 5 k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 83 (276)
T 1wma_A 5 HVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 83 (276)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 36776665543 34445566 677 899999887766655444432 246888999988752111 1368
Q ss_pred eEEEeCcc
Q 028547 115 DSVVDKGT 122 (207)
Q Consensus 115 D~v~~~~~ 122 (207)
|+|+.+..
T Consensus 84 d~li~~Ag 91 (276)
T 1wma_A 84 DVLVNNAG 91 (276)
T ss_dssp EEEEECCC
T ss_pred CEEEECCc
Confidence 99887644
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.71 E-value=2.8 Score=32.72 Aligned_cols=90 Identities=12% Similarity=0.189 Sum_probs=56.7
Q ss_pred CCCcEEEEcC--CCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc------c-ccCCCCeeE
Q 028547 47 HHQRILIVGC--GNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM------D-EFQTGSFDS 116 (207)
Q Consensus 47 ~~~~vLdiG~--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~------~-~~~~~~fD~ 116 (207)
.+.+||-.|+ |.|..+..+++. |. +|++++.+++.++.+++. .. ..++ |..+. . ......+|+
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~-ga---~~~~--d~~~~~~~~~~~~~~~~~~~D~ 242 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQN-GA---HEVF--NHREVNYIDKIKKYVGEKGIDI 242 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT-TC---SEEE--ETTSTTHHHHHHHHHCTTCEEE
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHc-CC---CEEE--eCCCchHHHHHHHHcCCCCcEE
Confidence 3459999997 346666666654 55 899999999888876543 11 1122 22211 0 012347999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+.... ...+....+.|+++|.++...
T Consensus 243 vi~~~G--------------~~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 243 IIEMLA--------------NVNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp EEESCH--------------HHHHHHHHHHEEEEEEEEECC
T ss_pred EEECCC--------------hHHHHHHHHhccCCCEEEEEe
Confidence 986521 124677889999999988765
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.71 E-value=2.5 Score=32.56 Aligned_cols=91 Identities=12% Similarity=0.131 Sum_probs=57.2
Q ss_pred CCCcEEEEcC--CCchhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc------cc-cCCCCeeE
Q 028547 47 HHQRILIVGC--GNSAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM------DE-FQTGSFDS 116 (207)
Q Consensus 47 ~~~~vLdiG~--G~G~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~------~~-~~~~~fD~ 116 (207)
.+++||-.|+ |.|..+..+++ .|. +|++++.+++.++.+++. .. . .++ |..+. .. .....+|+
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~-g~--~-~~~--~~~~~~~~~~~~~~~~~~~~D~ 212 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA-GA--W-QVI--NYREEDLVERLKEITGGKKVRV 212 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH-TC--S-EEE--ETTTSCHHHHHHHHTTTCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc-CC--C-EEE--ECCCccHHHHHHHHhCCCCceE
Confidence 3459999994 34666666555 466 999999999888877663 21 1 122 22211 00 12346999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++.... ...++.+.+.|+++|.++....
T Consensus 213 vi~~~g--------------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 213 VYDSVG--------------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp EEECSC--------------GGGHHHHHHTEEEEEEEEECCC
T ss_pred EEECCc--------------hHHHHHHHHHhcCCCEEEEEec
Confidence 986532 1246778899999999887653
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=88.58 E-value=4.5 Score=33.05 Aligned_cols=94 Identities=17% Similarity=0.276 Sum_probs=58.7
Q ss_pred CcEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-------------C----CCCceEEEecccccccc
Q 028547 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------------N----RPQLKYIKMDVRQMDEF 109 (207)
Q Consensus 49 ~~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-------------~----~~~~~~~~~d~~~~~~~ 109 (207)
++|.-||+|. | .++..++..|+ +|+++|.+++.++.+++... . ....++ ..|...
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~---- 111 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKE---- 111 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGG----
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHH----
Confidence 3799999987 3 45566677777 99999999988777654211 0 001122 233311
Q ss_pred CCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 110 QTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 110 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
-...|+|+..-+ . .......+++++...++|+.+++..+
T Consensus 112 -~~~aDlVIeaVp-e-------~~~~k~~v~~~l~~~~~~~~ii~snT 150 (463)
T 1zcj_A 112 -LSTVDLVVEAVF-E-------DMNLKKKVFAELSALCKPGAFLCTNT 150 (463)
T ss_dssp -GTTCSEEEECCC-S-------CHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred -HCCCCEEEEcCC-C-------CHHHHHHHHHHHHhhCCCCeEEEeCC
Confidence 235798886421 1 12345778888999999887766533
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=88.30 E-value=6.4 Score=29.27 Aligned_cols=63 Identities=8% Similarity=0.092 Sum_probs=44.1
Q ss_pred CcEEEEcCCCchhhHHHH----hcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGNSAFSEGMV----DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~----~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
++||-.|+ |.++..++ +.|+ +|++++-++........ .++.++.+|+.++. ...+|.|+....
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-----~~~~~~~~D~~d~~---~~~~d~vi~~a~ 72 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA-----SGAEPLLWPGEEPS---LDGVTHLLISTA 72 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH-----TTEEEEESSSSCCC---CTTCCEEEECCC
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh-----CCCeEEEecccccc---cCCCCEEEECCC
Confidence 38999995 65554444 4566 99999988765444332 36889999998864 467899887544
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=88.26 E-value=3 Score=33.52 Aligned_cols=43 Identities=9% Similarity=-0.076 Sum_probs=36.4
Q ss_pred cEEEEcCCCchhhHHHHhcC--CCc----EEEEeCCHHHHHHHHHHccC
Q 028547 50 RILIVGCGNSAFSEGMVDDG--YED----VVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~--~~~----v~~~D~s~~~i~~~~~~~~~ 92 (207)
+|+|+-||.|.+..-+.+.| +.. |.++|+++.+++..+.++..
T Consensus 12 rvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~ 60 (403)
T 4dkj_A 12 KVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK 60 (403)
T ss_dssp EEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred eEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence 99999999999998887776 334 78899999999988888764
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.21 E-value=2.7 Score=31.11 Aligned_cols=109 Identities=15% Similarity=0.145 Sum_probs=62.2
Q ss_pred CCcEEEEcCC--Cc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCC
Q 028547 48 HQRILIVGCG--NS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 48 ~~~vLdiG~G--~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
.++||-.|++ .| .++..+++.|+ +|+.++.+....+.+++.......+.++.+|+.+.... ..+.
T Consensus 14 ~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 92 (271)
T 3ek2_A 14 GKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWDS 92 (271)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 3488888875 44 34556666777 89999877544333333222224578899999885211 1247
Q ss_pred eeEEEeCcchhhh----c-cCC-CChhhHH-----------HHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSL----L-CGS-NSRQNAT-----------QMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~----~-~~~-~~~~~~~-----------~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|+++.+..+... . ... .+.++.. .+++.+.+.++++|.++.+.
T Consensus 93 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 93 LDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp EEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 8999977544321 0 000 1223322 33445556666677777655
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=88.20 E-value=6 Score=29.93 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=55.0
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccccCC--CCeeEEEeCcc
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQT--GSFDSVVDKGT 122 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~~~--~~fD~v~~~~~ 122 (207)
+|.-+|+|. | .++..+++.|+ +|+.+|.+++.++..++.-.. .........++........ ...|+|+..-.
T Consensus 5 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~ 83 (316)
T 2ew2_A 5 KIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK 83 (316)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred eEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence 788899975 3 44455666677 999999999877777654110 0000000011111101111 26898886422
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
.......++.+...++++..++..
T Consensus 84 ----------~~~~~~v~~~l~~~l~~~~~iv~~ 107 (316)
T 2ew2_A 84 ----------AQQLDAMFKAIQPMITEKTYVLCL 107 (316)
T ss_dssp ----------HHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred ----------cccHHHHHHHHHHhcCCCCEEEEe
Confidence 234577788888888887765543
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=88.14 E-value=2.7 Score=31.16 Aligned_cols=109 Identities=14% Similarity=0.133 Sum_probs=63.0
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEE-eCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCC
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNV-DISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~-D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
++++|--|++.| .++..+++.|+ +|+.+ +.+.+..+...+.+.. ..++.++.+|+.+.... .-+.
T Consensus 8 ~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 86 (259)
T 3edm_A 8 NRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGE 86 (259)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 347888888776 45566677787 78777 6666655555444432 25788999999875211 1147
Q ss_pred eeEEEeCcchh-hhc-cCCCChhhH-----------HHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLD-SLL-CGSNSRQNA-----------TQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~-~~~-~~~~~~~~~-----------~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|+++.+.... ... ....+.+++ -.+.+.+.+.++++|.++.+.
T Consensus 87 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 87 IHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp EEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 89988765322 110 111122222 233445556666677777654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.12 E-value=4 Score=30.84 Aligned_cols=108 Identities=17% Similarity=0.218 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCe
Q 028547 47 HHQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 47 ~~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
.++.+|--|++.| ..+..+++.|. +|+.+|.+++.++.+.+.+. .+..++.+|+.+.... .-+..
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 104 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIG--GGAVGIQADSANLAELDRLYEKVKAEAGRI 104 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC--TTCEEEECCTTCHHHHHHHHHHHHHHHSCE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC--CCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3447777787776 45566777787 99999999998888776664 3677888998875211 13578
Q ss_pred eEEEeCcchhhhc-cCCCChhhH-----------HHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDKGTLDSLL-CGSNSRQNA-----------TQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~~~l~~~~-~~~~~~~~~-----------~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+++.+.-..... ...-+.+++ -.+.+.+.+.|+.+|.++.+.
T Consensus 105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp EEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred CEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 9988775443221 112233332 233444566777778766654
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.07 E-value=3 Score=32.59 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=58.3
Q ss_pred CCCcEEEEcC-C-CchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc----cccCCCCeeEEEe
Q 028547 47 HHQRILIVGC-G-NSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----DEFQTGSFDSVVD 119 (207)
Q Consensus 47 ~~~~vLdiG~-G-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~fD~v~~ 119 (207)
.+.+||-.|+ | .|..+..+++. |. +|++++.+++.++.+++.-.. .++..+-.+. .......+|+|+.
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~----~~~~~~~~~~~~~~~~~~~~g~Dvvid 241 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGAK----RGINYRSEDFAAVIKAETGQGVDIILD 241 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCS----EEEETTTSCHHHHHHHHHSSCEEEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCC----EEEeCCchHHHHHHHHHhCCCceEEEE
Confidence 3458999853 3 47777777665 55 899999999988888764211 2222111111 0011457999996
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
...- ..++...+.|+++|.++....
T Consensus 242 ~~g~--------------~~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 242 MIGA--------------AYFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp SCCG--------------GGHHHHHHTEEEEEEEEECCC
T ss_pred CCCH--------------HHHHHHHHHhccCCEEEEEEe
Confidence 4221 146677899999999887653
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=87.95 E-value=2.7 Score=32.67 Aligned_cols=99 Identities=13% Similarity=0.181 Sum_probs=65.7
Q ss_pred CcEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--------C---C---------CceEEEeccccc
Q 028547 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--------R---P---------QLKYIKMDVRQM 106 (207)
Q Consensus 49 ~~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--------~---~---------~~~~~~~d~~~~ 106 (207)
.+|--||+|+ | .++..++..|+ +|+.+|++++.++.+.++... . . ++.+ ..|+.+.
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~-~~~l~~a 84 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS-CTNLAEA 84 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE-ECCHHHH
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc-ccchHhH
Confidence 3899999986 3 55666777788 999999999987776554321 0 0 1111 1222221
Q ss_pred cccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 107 DEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 107 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
-...|+|+-. +.+.+ +-...+++++.++++|+.++--.|.+-+
T Consensus 85 ----~~~ad~ViEa-v~E~l-------~iK~~lf~~l~~~~~~~aIlaSNTSsl~ 127 (319)
T 3ado_A 85 ----VEGVVHIQEC-VPENL-------DLKRKIFAQLDSIVDDRVVLSSSSSCLL 127 (319)
T ss_dssp ----TTTEEEEEEC-CCSCH-------HHHHHHHHHHHTTCCSSSEEEECCSSCC
T ss_pred ----hccCcEEeec-cccHH-------HHHHHHHHHHHHHhhhcceeehhhhhcc
Confidence 2356888754 34444 7889999999999999988876664443
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=87.88 E-value=3.7 Score=31.00 Aligned_cols=94 Identities=17% Similarity=0.291 Sum_probs=58.6
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-----------C---------CCceEEEecccccc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-----------R---------PQLKYIKMDVRQMD 107 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-----------~---------~~~~~~~~d~~~~~ 107 (207)
+|.-||+|. +.++..++..|+ +|+.+|.+++.++.+.+.... . .++.+ ..|..+.
T Consensus 6 kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~~- 82 (283)
T 4e12_A 6 NVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQA- 82 (283)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHHH-
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHHH-
Confidence 788888876 345556666777 999999999988877664210 0 01121 2232221
Q ss_pred ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 108 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
-...|+|+..-. . ..+....+++++...++|+.+++-.+
T Consensus 83 ---~~~aDlVi~av~-~-------~~~~~~~v~~~l~~~~~~~~il~s~t 121 (283)
T 4e12_A 83 ---VKDADLVIEAVP-E-------SLDLKRDIYTKLGELAPAKTIFATNS 121 (283)
T ss_dssp ---TTTCSEEEECCC-S-------CHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred ---hccCCEEEEecc-C-------cHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 235798886422 1 22466778889999999987765333
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=87.27 E-value=5.6 Score=30.56 Aligned_cols=95 Identities=9% Similarity=0.095 Sum_probs=56.9
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEE-eccccccccCCCCeeEEEeCcchh
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIK-MDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~-~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+|.-+|+|. +.++..+++.|. +|+.+ ..++.++..++.-.. .+...+.. ..+... .-....+|+|+..-.
T Consensus 21 kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~D~vilavk-- 95 (318)
T 3hwr_A 21 KVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSD-PSAVQGADLVLFCVK-- 95 (318)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESC-GGGGTTCSEEEECCC--
T ss_pred cEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCC-HHHcCCCCEEEEEcc--
Confidence 899999986 355666677776 89999 888877777654110 01111111 011111 011246898886422
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.......++.+...++++..++...
T Consensus 96 --------~~~~~~~l~~l~~~l~~~~~iv~~~ 120 (318)
T 3hwr_A 96 --------STDTQSAALAMKPALAKSALVLSLQ 120 (318)
T ss_dssp --------GGGHHHHHHHHTTTSCTTCEEEEEC
T ss_pred --------cccHHHHHHHHHHhcCCCCEEEEeC
Confidence 1356788888888998887665544
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=87.20 E-value=5.7 Score=30.58 Aligned_cols=91 Identities=16% Similarity=0.102 Sum_probs=57.7
Q ss_pred CCCcEEEEcC--CCchhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc------cc-cCCCCeeE
Q 028547 47 HHQRILIVGC--GNSAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM------DE-FQTGSFDS 116 (207)
Q Consensus 47 ~~~~vLdiG~--G~G~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~------~~-~~~~~fD~ 116 (207)
.+.+||-.|+ |.|..+..+++ .|. +|++++.+++.++.+++. .. . ..+ |..+. .. .....+|+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~-g~--~-~~~--d~~~~~~~~~i~~~~~~~~~d~ 217 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKL-GC--H-HTI--NYSTQDFAEVVREITGGKGVDV 217 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH-TC--S-EEE--ETTTSCHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc-CC--C-EEE--ECCCHHHHHHHHHHhCCCCCeE
Confidence 3458999995 45776666665 455 999999999888877653 21 1 112 22211 00 12346999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++....- ..++.+.+.|+++|.++....
T Consensus 218 vi~~~g~--------------~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 218 VYDSIGK--------------DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp EEECSCT--------------TTHHHHHHTEEEEEEEEECCC
T ss_pred EEECCcH--------------HHHHHHHHhhccCCEEEEEec
Confidence 9864211 346778899999999887653
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=87.00 E-value=2.2 Score=33.52 Aligned_cols=91 Identities=19% Similarity=0.315 Sum_probs=55.5
Q ss_pred CCcEEEEcCCC-chhhHHHHh-cCCCcEEEEeCCH---HHHHHHHHHccCCCCceEEEe-cccc-ccccCCCCeeEEEeC
Q 028547 48 HQRILIVGCGN-SAFSEGMVD-DGYEDVVNVDISS---VVIEAMMKKYSNRPQLKYIKM-DVRQ-MDEFQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~-~~~~~v~~~D~s~---~~i~~~~~~~~~~~~~~~~~~-d~~~-~~~~~~~~fD~v~~~ 120 (207)
+.+||-.|+|. |..+..+++ .|. +|++++.++ +.++.+++. . ...... ++.+ ... ....+|+|+..
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~-g----a~~v~~~~~~~~~~~-~~~~~d~vid~ 253 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEET-K----TNYYNSSNGYDKLKD-SVGKFDVIIDA 253 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHH-T----CEEEECTTCSHHHHH-HHCCEEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHh-C----CceechHHHHHHHHH-hCCCCCEEEEC
Confidence 45999999843 556666655 466 999999987 777777653 1 122211 1111 100 11569999865
Q ss_pred cchhhhccCCCChhhHHHHH-HHHHHhcCCCcEEEEEEe
Q 028547 121 GTLDSLLCGSNSRQNATQML-KEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l-~~~~~~L~pgG~~~~~~~ 158 (207)
... ...+ +.+.+.|+++|.++....
T Consensus 254 ~g~-------------~~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 254 TGA-------------DVNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp CCC-------------CTHHHHHHGGGEEEEEEEEECSC
T ss_pred CCC-------------hHHHHHHHHHHHhcCCEEEEEec
Confidence 221 1135 778899999999887653
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=86.92 E-value=4.1 Score=31.80 Aligned_cols=91 Identities=11% Similarity=0.015 Sum_probs=56.4
Q ss_pred CCCcEEEEcC--CCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc------cc-cCCCCeeE
Q 028547 47 HHQRILIVGC--GNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM------DE-FQTGSFDS 116 (207)
Q Consensus 47 ~~~~vLdiG~--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~------~~-~~~~~fD~ 116 (207)
.+.+||-.|+ |.|..+..+++. |. +|++++.+++.++.+++. .. . ..+ |..+. .. .....+|+
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~-g~--~-~~~--~~~~~~~~~~~~~~~~~~~~d~ 234 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKL-GA--A-AGF--NYKKEDFSEATLKFTKGAGVNL 234 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH-TC--S-EEE--ETTTSCHHHHHHHHTTTSCEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc-CC--c-EEE--ecCChHHHHHHHHHhcCCCceE
Confidence 3348999984 346666666554 55 899999999888888543 21 1 122 22111 00 12346999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++....- ..++...+.|+++|.++....
T Consensus 235 vi~~~G~--------------~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 235 ILDCIGG--------------SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp EEESSCG--------------GGHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCc--------------hHHHHHHHhccCCCEEEEEec
Confidence 9865221 136667899999999887653
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=86.79 E-value=7.4 Score=29.02 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=52.3
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+|.-||+|. | .++..+.+.++ +|+++|.+++.++.+.+. .. ... ...+..+ . ...|+|+..-.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g~--~~~-~~~~~~~---~--~~~D~vi~av~----- 66 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVER-QL--VDE-AGQDLSL---L--QTAKIIFLCTP----- 66 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT-TS--CSE-EESCGGG---G--TTCSEEEECSC-----
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhC-CC--Ccc-ccCCHHH---h--CCCCEEEEECC-----
Confidence 577888875 3 44455566676 899999999877776532 10 111 1122221 2 46798886522
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
.......++++...++++.+++
T Consensus 67 -----~~~~~~~~~~l~~~~~~~~~vv 88 (279)
T 2f1k_A 67 -----IQLILPTLEKLIPHLSPTAIVT 88 (279)
T ss_dssp -----HHHHHHHHHHHGGGSCTTCEEE
T ss_pred -----HHHHHHHHHHHHhhCCCCCEEE
Confidence 2345677788888888877554
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=86.56 E-value=1.5 Score=33.40 Aligned_cols=89 Identities=10% Similarity=0.124 Sum_probs=56.3
Q ss_pred CCCCcEEEEcC--CCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc---ccccCCCCeeEEEe
Q 028547 46 SHHQRILIVGC--GNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ---MDEFQTGSFDSVVD 119 (207)
Q Consensus 46 ~~~~~vLdiG~--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~fD~v~~ 119 (207)
+.+.+||-.|+ |.|..+..+++. |. +|++++.+++.++.+++. .. -.++ |..+ ... .-..+|+|+.
T Consensus 124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~-ga---~~~~--~~~~~~~~~~-~~~~~d~vid 195 (302)
T 1iz0_A 124 RPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLAL-GA---EEAA--TYAEVPERAK-AWGGLDLVLE 195 (302)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHT-TC---SEEE--EGGGHHHHHH-HTTSEEEEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc-CC---CEEE--ECCcchhHHH-HhcCceEEEE
Confidence 33459999997 347777777664 55 999999988877777652 21 1222 2221 100 1157999985
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..- ..++...+.|+++|.++...
T Consensus 196 -~g~--------------~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 196 -VRG--------------KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp -CSC--------------TTHHHHHTTEEEEEEEEEC-
T ss_pred -CCH--------------HHHHHHHHhhccCCEEEEEe
Confidence 211 14677889999999988754
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.50 E-value=2.5 Score=31.62 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=62.8
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEE-eCCHHHHHHHHHHcc-CCCCceEEEecccccccc---------CCCC
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNV-DISSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~-D~s~~~i~~~~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
++++|--|++.| .++..+++.|+ +|+.+ .-++...+...+.+. ...++.++.+|+.+.... .-+.
T Consensus 27 ~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 105 (267)
T 3u5t_A 27 NKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFGG 105 (267)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 347888888776 45566777787 77776 344444444444332 224678888998875211 1247
Q ss_pred eeEEEeCcchhhhc-cCCCChhhH-----------HHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLL-CGSNSRQNA-----------TQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~-~~~~~~~~~-----------~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|+++.+..+.... ....+.+++ -.+++.+.+.++++|.++.+.
T Consensus 106 iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 106 VDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 89998775433211 011122222 234556667777788877765
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=86.28 E-value=1.9 Score=32.28 Aligned_cols=76 Identities=16% Similarity=0.293 Sum_probs=52.4
Q ss_pred CCCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCC
Q 028547 47 HHQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 47 ~~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
.++++|--|++.| ..+..+++.|. +|...|.+++.++...+.+.. ..++.++.+|+.+.... .-+.
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 86 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIH 86 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence 3446666676666 45566677787 999999999888777665542 25678888898875211 2457
Q ss_pred eeEEEeCcch
Q 028547 114 FDSVVDKGTL 123 (207)
Q Consensus 114 fD~v~~~~~l 123 (207)
.|+++.+.-+
T Consensus 87 iDiLVNNAG~ 96 (255)
T 4g81_D 87 VDILINNAGI 96 (255)
T ss_dssp CCEEEECCCC
T ss_pred CcEEEECCCC
Confidence 8999987544
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=86.24 E-value=2.8 Score=31.03 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=50.8
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCe
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
++++|--|++.| .++..+++.|+ +|+.++.+++..+...+.+.. ..++.++.+|+.+.... .-+..
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 90 (256)
T 3gaf_A 12 DAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKI 90 (256)
T ss_dssp TCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 347777777665 44556667777 899999998877766655432 25788899998875211 11368
Q ss_pred eEEEeCcch
Q 028547 115 DSVVDKGTL 123 (207)
Q Consensus 115 D~v~~~~~l 123 (207)
|+++.+...
T Consensus 91 d~lv~nAg~ 99 (256)
T 3gaf_A 91 TVLVNNAGG 99 (256)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999877544
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=86.18 E-value=6.2 Score=27.90 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=54.3
Q ss_pred cEEEEcCCC--c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 50 RILIVGCGN--S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 50 ~vLdiG~G~--G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+||-.|+.. | .+...+++.|+ +|++++-++....... .++.++.+|+.+.....-..+|+|+.......
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~------~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~- 73 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH------KDINILQKDIFDLTLSDLSDQNVVVDAYGISP- 73 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC------SSSEEEECCGGGCCHHHHTTCSEEEECCCSST-
T ss_pred eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc------CCCeEEeccccChhhhhhcCCCEEEECCcCCc-
Confidence 577777532 2 33344555676 9999998876544332 46889999998763212246798887543321
Q ss_pred ccCCCChhhHHHHHHHHHHhcCC--CcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKD--KGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~p--gG~~~~~~ 157 (207)
...........++.+.++. .+.+++.+
T Consensus 74 ----~~~~~~~~~~~~l~~a~~~~~~~~~v~~S 102 (221)
T 3ew7_A 74 ----DEAEKHVTSLDHLISVLNGTVSPRLLVVG 102 (221)
T ss_dssp ----TTTTSHHHHHHHHHHHHCSCCSSEEEEEC
T ss_pred ----cccchHHHHHHHHHHHHHhcCCceEEEEe
Confidence 1122233344555555544 35555543
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=86.16 E-value=5.8 Score=26.60 Aligned_cols=95 Identities=7% Similarity=0.054 Sum_probs=56.0
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCC-HHHHHHHHHHccCCCCceEEEeccccccc---cCCCCeeEEEeCcch
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDIS-SVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDKGTL 123 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s-~~~i~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~v~~~~~l 123 (207)
+|+-+|+|. | .++..+.+.|. +|+.+|.+ ++..+....... ..+.++.+|..+... ..-...|.|++.-.
T Consensus 5 ~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~- 80 (153)
T 1id1_A 5 HFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG--DNADVIPGDSNDSSVLKKAGIDRCRAILALSD- 80 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC--TTCEEEESCTTSHHHHHHHTTTTCSEEEECSS-
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhc--CCCeEEEcCCCCHHHHHHcChhhCCEEEEecC-
Confidence 788888753 2 22233444566 99999997 454444443332 257888888876421 13457898886421
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.......+....+.+.|...++...
T Consensus 81 ---------~d~~n~~~~~~a~~~~~~~~ii~~~ 105 (153)
T 1id1_A 81 ---------NDADNAFVVLSAKDMSSDVKTVLAV 105 (153)
T ss_dssp ---------CHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred ---------ChHHHHHHHHHHHHHCCCCEEEEEE
Confidence 1334455556667777766665543
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=86.09 E-value=5.3 Score=29.72 Aligned_cols=109 Identities=22% Similarity=0.251 Sum_probs=63.5
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeC-CHHHHHHHHHHcc-CCCCceEEEecccccccc---------CCCCe
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDI-SSVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~-s~~~i~~~~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
+++|--|++.| .++..+++.|+ +|+.++. +.+..+...+.+. ...++.++.+|+.+.... .-+..
T Consensus 19 k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 97 (270)
T 3is3_A 19 KVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHL 97 (270)
T ss_dssp CEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 47788887765 35556677777 8888765 4444444444333 225788899998885211 11368
Q ss_pred eEEEeCcchhhhc-cCCCChhh-----------HHHHHHHHHHhcCCCcEEEEEEe
Q 028547 115 DSVVDKGTLDSLL-CGSNSRQN-----------ATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 115 D~v~~~~~l~~~~-~~~~~~~~-----------~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|+++.+....... ....+.++ .-.+.+.+.+.++++|.++.+..
T Consensus 98 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 98 DIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp CEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 9988765432210 00112222 23345566778888888877664
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.01 E-value=5.1 Score=29.95 Aligned_cols=109 Identities=15% Similarity=0.199 Sum_probs=63.6
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCC-HHHHHHHHHHcc-CCCCceEEEecccccccc---------CCCC
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDIS-SVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s-~~~i~~~~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
++++|--|++.| .++..+++.|+ +|+.++.. .+..+...+.+. ...++.++.+|+.+.... ..+.
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 109 (271)
T 3v2g_A 31 GKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGG 109 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 348888888776 45566777787 88887544 344444433332 224678889998875211 1236
Q ss_pred eeEEEeCcchhhhc-cCCCChhh-----------HHHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLL-CGSNSRQN-----------ATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~-~~~~~~~~-----------~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|+++.+..+.... ....+.++ .-.+++.+.+.++++|.++.+.
T Consensus 110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 110 LDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 89998765432210 00112222 2334566677788888877765
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=85.93 E-value=1 Score=36.54 Aligned_cols=93 Identities=17% Similarity=0.103 Sum_probs=57.8
Q ss_pred CCCcEEEEcC-C-CchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cc------------------
Q 028547 47 HHQRILIVGC-G-NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DV------------------ 103 (207)
Q Consensus 47 ~~~~vLdiG~-G-~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~------------------ 103 (207)
.+.+||-.|+ | -|..+..+++....++++++.+++.++.+++. .. . .++.. +.
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~l-Ga--~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRAL-GC--D-LVINRAELGITDDIADDPRRVVETGRKL 295 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TC--C-CEEEHHHHTCCTTGGGCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc-CC--C-EEEecccccccccccccccccchhhhHH
Confidence 3458999997 3 37777777775334889999999888888653 21 1 12211 11
Q ss_pred -ccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 104 -RQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 104 -~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..........+|+|+.... ...++...+.|+++|.++...
T Consensus 296 ~~~v~~~~g~g~Dvvid~~G--------------~~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 296 AKLVVEKAGREPDIVFEHTG--------------RVTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHSSCCSEEEECSC--------------HHHHHHHHHHSCTTCEEEESC
T ss_pred HHHHHHHhCCCceEEEECCC--------------chHHHHHHHHHhcCCEEEEEe
Confidence 0110011356999986421 125677889999999998765
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.76 E-value=0.9 Score=35.09 Aligned_cols=89 Identities=16% Similarity=0.243 Sum_probs=54.7
Q ss_pred cEEEEcC--CCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe-cc-cc-ccccCCCCeeEEEeCcch
Q 028547 50 RILIVGC--GNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DV-RQ-MDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 50 ~vLdiG~--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~-d~-~~-~~~~~~~~fD~v~~~~~l 123 (207)
+||-.|+ |.|..+..+++. |. ++++++.+++.++.+++. .. -.++.. +. .+ ........+|+|+..-.
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~l-Ga---~~~i~~~~~~~~~~~~~~~~~~d~vid~~g- 225 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVL-GA---KEVLAREDVMAERIRPLDKQRWAAAVDPVG- 225 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHT-TC---SEEEECC---------CCSCCEEEEEECST-
T ss_pred eEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-CC---cEEEecCCcHHHHHHHhcCCcccEEEECCc-
Confidence 7999997 347777777765 55 899999988777777653 21 111111 11 01 11122347999886411
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. ..++...+.|+++|.++...
T Consensus 226 ----------~---~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 226 ----------G---RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp ----------T---TTHHHHHHTEEEEEEEEECS
T ss_pred ----------H---HHHHHHHHhhccCCEEEEEe
Confidence 0 13677789999999988754
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=85.50 E-value=4.5 Score=29.85 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=46.4
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc----C------CCCe
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF----Q------TGSF 114 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~----~------~~~f 114 (207)
++||-.|++.| .++..+++.|+ +|++++.++..++...+.+.. ..++.++.+|+.+.... . .+..
T Consensus 15 k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~i 93 (266)
T 1xq1_A 15 KTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKL 93 (266)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 37777776554 34455566677 899999988766655444322 24678888898774211 0 1568
Q ss_pred eEEEeCcc
Q 028547 115 DSVVDKGT 122 (207)
Q Consensus 115 D~v~~~~~ 122 (207)
|+++.+..
T Consensus 94 d~li~~Ag 101 (266)
T 1xq1_A 94 DILINNLG 101 (266)
T ss_dssp SEEEEECC
T ss_pred cEEEECCC
Confidence 98887644
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=85.44 E-value=3.7 Score=31.27 Aligned_cols=89 Identities=16% Similarity=0.222 Sum_probs=53.7
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+|.-||+|. | .++..+++.|+ +|+++|.+++.++.+.+. .......+..+. -...|+|+..-.-
T Consensus 9 ~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~-----g~~~~~~~~~e~----~~~aDvvi~~vp~---- 74 (303)
T 3g0o_A 9 HVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAE-----GACGAAASAREF----AGVVDALVILVVN---- 74 (303)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT-----TCSEEESSSTTT----TTTCSEEEECCSS----
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHc-----CCccccCCHHHH----HhcCCEEEEECCC----
Confidence 788898875 3 45556666777 999999999887777653 112212333332 1346888864221
Q ss_pred cCCCChhhHHHHH---HHHHHhcCCCcEEEEEE
Q 028547 128 CGSNSRQNATQML---KEVWRVLKDKGVYILVT 157 (207)
Q Consensus 128 ~~~~~~~~~~~~l---~~~~~~L~pgG~~~~~~ 157 (207)
.......+ +.+...+++|.+++-.+
T Consensus 75 -----~~~~~~v~~~~~~l~~~l~~g~ivv~~s 102 (303)
T 3g0o_A 75 -----AAQVRQVLFGEDGVAHLMKPGSAVMVSS 102 (303)
T ss_dssp -----HHHHHHHHC--CCCGGGSCTTCEEEECS
T ss_pred -----HHHHHHHHhChhhHHhhCCCCCEEEecC
Confidence 12334444 55667788877665443
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=85.39 E-value=7.8 Score=29.22 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=63.0
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHH-HHHHHHHHccC-CCCceEEEecccccccc---------CCCC
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSV-VIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~-~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
+++||-.|++.| .++..+++.|+ +|+.++.+.. ..+...+.... ..++.++.+|+.+.... .-+.
T Consensus 47 gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 125 (291)
T 3ijr_A 47 GKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGS 125 (291)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 347888887766 45566677777 8999887754 33333333222 24788899999875211 1236
Q ss_pred eeEEEeCcchhhhc--cCCCChhh-----------HHHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLL--CGSNSRQN-----------ATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~--~~~~~~~~-----------~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|+++.+....... ....+.++ .-.+++.+.+.++++|.++.+.
T Consensus 126 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 126 LNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp CCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred CCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 89988764322110 00012222 2334556677778888877654
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.37 E-value=12 Score=30.72 Aligned_cols=94 Identities=16% Similarity=0.235 Sum_probs=59.9
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-------CCC------------CceEEEeccccccc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------NRP------------QLKYIKMDVRQMDE 108 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-------~~~------------~~~~~~~d~~~~~~ 108 (207)
+|--||+|. +.++..+++.|+ +|++.|.+++.++.+.+... ... ++.+ ..|...
T Consensus 7 kVgVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--- 81 (483)
T 3mog_A 7 TVAVIGSGTMGAGIAEVAASHGH-QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP-VTDIHA--- 81 (483)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE-ECCGGG---
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE-eCCHHH---
Confidence 677888886 456667777787 99999999999888765421 111 1222 223221
Q ss_pred cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 109 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
-...|+|+..- .. +......+++++.+.++++.++...+.
T Consensus 82 --~~~aDlVIeAV-pe-------~~~vk~~v~~~l~~~~~~~~IlasntS 121 (483)
T 3mog_A 82 --LAAADLVIEAA-SE-------RLEVKKALFAQLAEVCPPQTLLTTNTS 121 (483)
T ss_dssp --GGGCSEEEECC-CC-------CHHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred --hcCCCEEEEcC-CC-------cHHHHHHHHHHHHHhhccCcEEEecCC
Confidence 13569888641 11 224456788999999999887755443
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=85.25 E-value=0.63 Score=37.06 Aligned_cols=99 Identities=10% Similarity=0.183 Sum_probs=54.6
Q ss_pred CCcEEEEcCCC-chhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 48 HQRILIVGCGN-SAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
+++|+-+|+|. |......+. .|. +|+++|.+++.++.+++.+.. .+.....+..++.. .-...|+|+..-....
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~--~~~~~~~~~~~l~~-~l~~aDvVi~~~~~p~ 243 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCG--RIHTRYSSAYELEG-AVKRADLVIGAVLVPG 243 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTT--SSEEEECCHHHHHH-HHHHCSEEEECCCCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCC--eeEeccCCHHHHHH-HHcCCCEEEECCCcCC
Confidence 35999999965 444444443 455 999999999888777665432 12221111111110 0125799986321110
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. .....+.+...+.++|||.++.+.
T Consensus 244 ------~-~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 244 ------A-KAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp ------S-CCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred ------C-CCcceecHHHHhcCCCCcEEEEEe
Confidence 0 001112455678899999887654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=85.20 E-value=2.4 Score=31.30 Aligned_cols=74 Identities=19% Similarity=0.355 Sum_probs=51.0
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc----CCCCceEEEecccccccc---------CCC
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS----NRPQLKYIKMDVRQMDEF---------QTG 112 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~----~~~~~~~~~~d~~~~~~~---------~~~ 112 (207)
+++|--|++.| .++..+++.|+ +|+.++.+++.++...+.+. ...++.++.+|+.+.... ..+
T Consensus 8 k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 86 (250)
T 3nyw_A 8 GLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYG 86 (250)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhcC
Confidence 47888888776 45566677787 99999999887766655432 115678899999875211 124
Q ss_pred CeeEEEeCcch
Q 028547 113 SFDSVVDKGTL 123 (207)
Q Consensus 113 ~fD~v~~~~~l 123 (207)
..|+++.+..+
T Consensus 87 ~iD~lvnnAg~ 97 (250)
T 3nyw_A 87 AVDILVNAAAM 97 (250)
T ss_dssp CEEEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 78999877544
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.98 E-value=0.93 Score=35.89 Aligned_cols=99 Identities=10% Similarity=0.215 Sum_probs=53.3
Q ss_pred CcEEEEcCCC-chhhHHHH-hcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGN-SAFSEGMV-DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~-~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
++|+-+|+|. |......+ ..|. +|+++|.+++.++.+++.... .+.....+..+... .-..+|+|+.......-
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~--~~~~~~~~~~~l~~-~~~~~DvVi~~~g~~~~ 242 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGG--RVITLTATEANIKK-SVQHADLLIGAVLVPGA 242 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTT--SEEEEECCHHHHHH-HHHHCSEEEECCC----
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCc--eEEEecCCHHHHHH-HHhCCCEEEECCCCCcc
Confidence 4899999853 44333333 3466 999999999887777654422 11111111111110 11357999865332210
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.....+.+...+.+++||.++.+..
T Consensus 243 -------~~~~li~~~~l~~mk~gg~iV~v~~ 267 (369)
T 2eez_A 243 -------KAPKLVTRDMLSLMKEGAVIVDVAV 267 (369)
T ss_dssp ----------CCSCHHHHTTSCTTCEEEECC-
T ss_pred -------ccchhHHHHHHHhhcCCCEEEEEec
Confidence 0111124667788899998776553
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.91 E-value=4.1 Score=30.42 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=49.3
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEeccccccccC----------CCCe
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQ----------TGSF 114 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~~----------~~~f 114 (207)
+++|-.|++.| .++..+++.|+ +|+.++.+++.++...+.+.. ..++.++.+|+.+..... .+..
T Consensus 22 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~i 100 (273)
T 1ae1_A 22 TTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKL 100 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSCC
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 47888887665 44556666777 899999998776655444332 246788889988752110 1678
Q ss_pred eEEEeCcch
Q 028547 115 DSVVDKGTL 123 (207)
Q Consensus 115 D~v~~~~~l 123 (207)
|+++.+...
T Consensus 101 d~lv~nAg~ 109 (273)
T 1ae1_A 101 NILVNNAGV 109 (273)
T ss_dssp CEEEECCCC
T ss_pred cEEEECCCC
Confidence 999887543
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=84.85 E-value=3.4 Score=30.52 Aligned_cols=72 Identities=22% Similarity=0.355 Sum_probs=47.3
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccC---------CCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQ---------TGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~---------~~~fD~ 116 (207)
++||-.|++.| .++..+++.|+ +|+.++.+++..+...+.+. .++.++.+|+.+..... .+..|+
T Consensus 6 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~ 82 (254)
T 1hdc_A 6 KTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELG--DAARYQHLDVTIEEDWQRVVAYAREEFGSVDG 82 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTG--GGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 37788887665 44556666777 89999998877666554432 35678888887742110 136899
Q ss_pred EEeCcch
Q 028547 117 VVDKGTL 123 (207)
Q Consensus 117 v~~~~~l 123 (207)
++.+..+
T Consensus 83 lv~nAg~ 89 (254)
T 1hdc_A 83 LVNNAGI 89 (254)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 8876543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=84.29 E-value=1.5 Score=35.93 Aligned_cols=67 Identities=21% Similarity=0.335 Sum_probs=47.1
Q ss_pred CcEEEEcCCC-chhhH-HHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc---cCCCCeeEEEeC
Q 028547 49 QRILIVGCGN-SAFSE-GMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVDK 120 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~-~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~v~~~ 120 (207)
.+|+-+|||. |.... .|...++ +|+.+|.+++.++.+..++ .+..+.+|..+..- ..-+..|++++.
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~~~-~v~vId~d~~~~~~~~~~~----~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~ 75 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGENN-DITIVDKDGDRLRELQDKY----DLRVVNGHASHPDVLHEAGAQDADMLVAV 75 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCSTTE-EEEEEESCHHHHHHHHHHS----SCEEEESCTTCHHHHHHHTTTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHhc----CcEEEEEcCCCHHHHHhcCCCcCCEEEEE
Confidence 4788888874 43332 3333455 8999999999998887775 57889999888521 234678888864
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=84.29 E-value=2.9 Score=28.30 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=50.7
Q ss_pred CcEEEEcCCC-chhh-HHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc---ccCCCCeeEEEeCcch
Q 028547 49 QRILIVGCGN-SAFS-EGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EFQTGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~-~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~fD~v~~~~~l 123 (207)
.+|+-+|+|. |... ..+...|. +|+++|.+++.++.++. .....++..|..+.. ......+|+|+..-.-
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~----~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~ 94 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS----EFSGFTVVGDAAEFETLKECGMEKADMVFAFTND 94 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT----TCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh----cCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCC
Confidence 4899999875 4333 33444566 99999998865433221 123456666654421 1113468988864211
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
......+..+.+.+.+...++...
T Consensus 95 ----------~~~~~~~~~~~~~~~~~~~iv~~~ 118 (155)
T 2g1u_A 95 ----------DSTNFFISMNARYMFNVENVIARV 118 (155)
T ss_dssp ----------HHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred ----------cHHHHHHHHHHHHHCCCCeEEEEE
Confidence 223344444555555555555443
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=84.22 E-value=8.1 Score=31.44 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=57.8
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---------------CCceEEEeccccccccCCC
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---------------PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---------------~~~~~~~~d~~~~~~~~~~ 112 (207)
+|.-||+|. | .++..+++.|+ +|+++|.+++.++..++..... .++.+ ..|..+. -.
T Consensus 4 kI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea----~~ 77 (450)
T 3gg2_A 4 DIAVVGIGYVGLVSATCFAELGA-NVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQA----VP 77 (450)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHH----GG
T ss_pred EEEEECcCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHH----Hh
Confidence 677888875 2 44556666777 9999999999888776632110 11221 1222221 12
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..|+|+..-.-..-..+..+.......++.+.+.|++|-+++..+
T Consensus 78 ~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S 122 (450)
T 3gg2_A 78 EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS 122 (450)
T ss_dssp GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence 468887542111000001112367788889999998876665544
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=84.21 E-value=5.9 Score=29.79 Aligned_cols=83 Identities=11% Similarity=0.163 Sum_probs=52.8
Q ss_pred cEEEEcC-CC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 50 RILIVGC-GN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 50 ~vLdiG~-G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+|.-||+ |. | .++..+.+.|+ +|+++|.+++.++.+.+. .+.. .+..+. -...|+|+..-.
T Consensus 13 ~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~-----g~~~--~~~~~~----~~~aDvVi~av~---- 76 (286)
T 3c24_A 13 TVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQGM-----GIPL--TDGDGW----IDEADVVVLALP---- 76 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHHT-----TCCC--CCSSGG----GGTCSEEEECSC----
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHhc-----CCCc--CCHHHH----hcCCCEEEEcCC----
Confidence 7999999 75 3 44555666676 899999999877766551 1221 122221 235799986422
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
.......++.+...++++.+++
T Consensus 77 ------~~~~~~v~~~l~~~l~~~~ivv 98 (286)
T 3c24_A 77 ------DNIIEKVAEDIVPRVRPGTIVL 98 (286)
T ss_dssp ------HHHHHHHHHHHGGGSCTTCEEE
T ss_pred ------chHHHHHHHHHHHhCCCCCEEE
Confidence 2345777778878888776544
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=84.15 E-value=2.9 Score=31.24 Aligned_cols=74 Identities=14% Similarity=0.284 Sum_probs=53.1
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCe
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
++.+|-=|++.| ..+..+++.|. +|..+|.+++.++...+.+.. ..++.++.+|+.+.... .-+..
T Consensus 7 gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i 85 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRI 85 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 347777787776 45566677777 999999999988877776653 25788899999885211 12578
Q ss_pred eEEEeCcc
Q 028547 115 DSVVDKGT 122 (207)
Q Consensus 115 D~v~~~~~ 122 (207)
|+++.+.-
T Consensus 86 DiLVNNAG 93 (254)
T 4fn4_A 86 DVLCNNAG 93 (254)
T ss_dssp CEEEECCC
T ss_pred CEEEECCc
Confidence 99988754
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=83.55 E-value=6.3 Score=30.52 Aligned_cols=92 Identities=17% Similarity=0.234 Sum_probs=54.7
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---CCCce------EEEeccccccccCCCCeeEEE
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLK------YIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~~~~~------~~~~d~~~~~~~~~~~fD~v~ 118 (207)
+|.-+|+|. | .++..+++.|. +|+.+|.+++.++..++...- ..... ....|..+. ...+|+|+
T Consensus 6 ki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~D~vi 80 (359)
T 1bg6_A 6 TYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA----VKDADVIL 80 (359)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH----HTTCSEEE
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHH----HhcCCEEE
Confidence 789999986 3 44455566676 899999999887777664210 00000 011121111 13579888
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
..-.- ......++.+...++++..++..
T Consensus 81 ~~v~~----------~~~~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 81 IVVPA----------IHHASIAANIASYISEGQLIILN 108 (359)
T ss_dssp ECSCG----------GGHHHHHHHHGGGCCTTCEEEES
T ss_pred EeCCc----------hHHHHHHHHHHHhCCCCCEEEEc
Confidence 64222 23467778888888887765543
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=83.25 E-value=5.4 Score=30.20 Aligned_cols=108 Identities=11% Similarity=0.077 Sum_probs=62.0
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCC--HHHHHHHHHHcc-CCCCceEEEecccccccc---------CCCC
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDIS--SVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s--~~~i~~~~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
+++|-.|++.| .++..+++.|+ +|+.++.+ ....+...+... ...++.++.+|+.+.... ..+.
T Consensus 50 k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 128 (294)
T 3r3s_A 50 RKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALGG 128 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 47888887766 45556677777 88888876 233333333222 124678888898875211 1246
Q ss_pred eeEEEeCcchhhhc--cCCCChhh-----------HHHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLL--CGSNSRQN-----------ATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~--~~~~~~~~-----------~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|+++.+....... ....+.++ .-.+++.+.+.++++|.++.+.
T Consensus 129 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is 185 (294)
T 3r3s_A 129 LDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS 185 (294)
T ss_dssp CCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred CCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence 89988765432110 00112222 2234455667777888877765
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=83.03 E-value=3.2 Score=31.95 Aligned_cols=74 Identities=16% Similarity=0.376 Sum_probs=51.3
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccccc---------CCCC
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
++||--|++.| .++..+++.|+ +|++++.+++.++.+.+.+... .++.++.+|+.+...+ ..+.
T Consensus 9 k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 87 (319)
T 3ioy_A 9 RTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFGP 87 (319)
T ss_dssp CEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCCC
Confidence 47888888776 45566677787 8999999998777665544311 2678889998875211 1247
Q ss_pred eeEEEeCcch
Q 028547 114 FDSVVDKGTL 123 (207)
Q Consensus 114 fD~v~~~~~l 123 (207)
.|+++.+..+
T Consensus 88 id~lv~nAg~ 97 (319)
T 3ioy_A 88 VSILCNNAGV 97 (319)
T ss_dssp EEEEEECCCC
T ss_pred CCEEEECCCc
Confidence 8999987554
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=82.76 E-value=1.5 Score=34.16 Aligned_cols=89 Identities=19% Similarity=0.159 Sum_probs=56.7
Q ss_pred CCCcEEEEcC-C-CchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc-----ccCCCCeeEEE
Q 028547 47 HHQRILIVGC-G-NSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD-----EFQTGSFDSVV 118 (207)
Q Consensus 47 ~~~~vLdiG~-G-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~fD~v~ 118 (207)
.+.+||-+|+ | .|..+..+++. |. +|+++ .+++.++.+++.- ...+. +-.+.. ......+|+|+
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~lG-----a~~i~-~~~~~~~~~~~~~~~~g~D~vi 221 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLG-----ATPID-ASREPEDYAAEHTAGQGFDLVY 221 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHHT-----SEEEE-TTSCHHHHHHHHHTTSCEEEEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcC-----CCEec-cCCCHHHHHHHHhcCCCceEEE
Confidence 3459999994 3 47777777775 45 89999 7888888776642 12221 111110 01235799998
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.... ...+....+.|+++|.++...
T Consensus 222 d~~g--------------~~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 222 DTLG--------------GPVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp ESSC--------------THHHHHHHHHEEEEEEEEESC
T ss_pred ECCC--------------cHHHHHHHHHHhcCCeEEEEc
Confidence 6411 135777889999999988754
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=82.59 E-value=13 Score=27.70 Aligned_cols=88 Identities=17% Similarity=0.260 Sum_probs=52.8
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCC-CeeEEEeCcchhh
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTG-SFDSVVDKGTLDS 125 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~fD~v~~~~~l~~ 125 (207)
+|.-||+|. | .++..+.+.|+ .+|+++|.+++.++.+++.- -......|..+. .. ..|+|+..-..
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g----~~~~~~~~~~~~----~~~~aDvVilavp~-- 72 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG----IIDEGTTSIAKV----EDFSPDFVMLSSPV-- 72 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT----SCSEEESCGGGG----GGTCCSEEEECSCH--
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCC----CcccccCCHHHH----hcCCCCEEEEcCCH--
Confidence 678888875 3 44444555554 27999999998877765421 111111232222 12 57988865322
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
......++++...++++.+++.
T Consensus 73 --------~~~~~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 73 --------RTFREIAKKLSYILSEDATVTD 94 (281)
T ss_dssp --------HHHHHHHHHHHHHSCTTCEEEE
T ss_pred --------HHHHHHHHHHHhhCCCCcEEEE
Confidence 3445777888888998875554
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=82.59 E-value=0.75 Score=36.35 Aligned_cols=100 Identities=11% Similarity=0.164 Sum_probs=55.9
Q ss_pred CcEEEEcCCC-chhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGN-SAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
++|+-+|+|. |.....++. .|. +|+++|.+++..+.+++.... .+.....+..++.. .-..+|+|+..-....-
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~DvVI~~~~~~~~ 243 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS--RVELLYSNSAEIET-AVAEADLLIGAVLVPGR 243 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG--GSEEEECCHHHHHH-HHHTCSEEEECCCCTTS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc--eeEeeeCCHHHHHH-HHcCCCEEEECCCcCCC
Confidence 4999999964 444444444 466 999999999888777665432 12222212111110 11258999864322110
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
..+..+.+...+.++++|.++-+.+.
T Consensus 244 -------~~~~li~~~~~~~~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 244 -------RAPILVPASLVEQMRTGSVIVDVAVD 269 (361)
T ss_dssp -------SCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred -------CCCeecCHHHHhhCCCCCEEEEEecC
Confidence 00011134456788999988766543
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=82.59 E-value=3.6 Score=28.41 Aligned_cols=100 Identities=11% Similarity=0.061 Sum_probs=57.4
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccC----CCCeeEE
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQ----TGSFDSV 117 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~----~~~fD~v 117 (207)
....+ .|||+|-|+|+.--++.+..+ ..++++|-.-.. ..... +.-.++.+|+.+..+.. ..+.-++
T Consensus 38 ~~~~G-pVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~------hp~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~La 110 (174)
T 3iht_A 38 AGLSG-PVYELGLGNGRTYHHLRQHVQGREIYVFERAVAS------HPDSTPPEAQLILGDIRETLPATLERFGATASLV 110 (174)
T ss_dssp TTCCS-CEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCC------CGGGCCCGGGEEESCHHHHHHHHHHHHCSCEEEE
T ss_pred cCCCC-ceEEecCCCChhHHHHHHhCCCCcEEEEEeeecc------CCCCCCchHheecccHHHHHHHHHHhcCCceEEE
Confidence 33445 999999999999999988755 599999853210 00011 34578889988863321 3334444
Q ss_pred EeCcchhhhccCCCCh--hhHHHHHHHHHHhcCCCcEEEE
Q 028547 118 VDKGTLDSLLCGSNSR--QNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
.+..- ++.... .....+-.-+..+|+|||+++-
T Consensus 111 HaD~G-----~g~~~~d~a~a~~lsplI~~~la~GGi~vS 145 (174)
T 3iht_A 111 HADLG-----GHNREKNDRFARLISPLIEPHLAQGGLMVS 145 (174)
T ss_dssp EECCC-----CSCHHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EeecC-----CCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 43311 111000 1122222334678899998863
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=82.44 E-value=7 Score=29.26 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=59.3
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHH-HHHHHHHcc-CCCCceEEEecccccccc---------CCCC
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVV-IEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~-i~~~~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
++++|-.|++.| .++..+++.|+ +|++++.+... .+...+.+. ...++.++.+|+.+.... .-+.
T Consensus 29 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 107 (283)
T 1g0o_A 29 GKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK 107 (283)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 336777776655 34455566677 89988876532 333322222 124678888888764211 1136
Q ss_pred eeEEEeCcchhhhc-cCCCChhhH-----------HHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLL-CGSNSRQNA-----------TQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~-~~~~~~~~~-----------~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|+++.+....... ....+.+++ ..+++.+.+.++.+|.++.+.
T Consensus 108 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 108 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 89988765432210 000122222 224455666777778877765
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=82.37 E-value=5.1 Score=31.50 Aligned_cols=94 Identities=11% Similarity=0.123 Sum_probs=56.3
Q ss_pred CCCCcEEEEcCC--CchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccc-ccccCCCCeeEEEe
Q 028547 46 SHHQRILIVGCG--NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEFQTGSFDSVVD 119 (207)
Q Consensus 46 ~~~~~vLdiG~G--~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~-~~~~~~~~fD~v~~ 119 (207)
+.+.+||-.|++ .|.++..+++....+|+++. +++-++.+++.-. -.++.. |+.+ ......+.+|+|+.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa----~~vi~~~~~~~~~~v~~~t~g~~d~v~d 237 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGA----EEVFDYRAPNLAQTIRTYTKNNLRYALD 237 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTC----SEEEETTSTTHHHHHHHHTTTCCCEEEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCC----cEEEECCCchHHHHHHHHccCCccEEEE
Confidence 344589999983 58888888775333888875 7777777765311 122221 1111 11112345999996
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhc-CCCcEEEEEE
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVL-KDKGVYILVT 157 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~~~~~~ 157 (207)
.-. -...++.+.+.| +++|.++...
T Consensus 238 ~~g-------------~~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 238 CIT-------------NVESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp SSC-------------SHHHHHHHHHHSCTTCEEEEESS
T ss_pred CCC-------------chHHHHHHHHHhhcCCCEEEEEe
Confidence 411 134567778888 6999988654
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=82.26 E-value=1.7 Score=33.47 Aligned_cols=90 Identities=18% Similarity=0.295 Sum_probs=56.5
Q ss_pred cEEEEcC-C-CchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe-cc-cc-ccccCCCCeeEEEeCcch
Q 028547 50 RILIVGC-G-NSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DV-RQ-MDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 50 ~vLdiG~-G-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~-d~-~~-~~~~~~~~fD~v~~~~~l 123 (207)
+||-.|+ | .|..+..+++. |. ++++++.+++.++.+++. .. -.++.. +. .+ ........+|+|+..-.
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~l-Ga---~~v~~~~~~~~~~~~~~~~~~~d~vid~~g- 226 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL-GA---SEVISREDVYDGTLKALSKQQWQGAVDPVG- 226 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH-TC---SEEEEHHHHCSSCCCSSCCCCEEEEEESCC-
T ss_pred eEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc-CC---cEEEECCCchHHHHHHhhcCCccEEEECCc-
Confidence 7999997 3 47777777664 55 899999888777777653 21 122221 11 11 11122346999886411
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
. ..+....+.|+++|.++....
T Consensus 227 -----------~--~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 227 -----------G--KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp -----------T--HHHHHHHTTEEEEEEEEECCC
T ss_pred -----------H--HHHHHHHHhhcCCCEEEEEec
Confidence 1 257788899999999887653
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=82.26 E-value=4.8 Score=29.84 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=61.1
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCC---HHHHHHHHHHccC-CCCceEEEecccccccc---------CC
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDIS---SVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QT 111 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s---~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~ 111 (207)
++++|--|++.| .++..+++.|+ +|+.++.+ .+.++...+.+.. ..++.++.+|+.+.... .-
T Consensus 11 ~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 89 (262)
T 3ksu_A 11 NKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEF 89 (262)
T ss_dssp TCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 347888887766 34455666677 88887653 3344444444332 24678889998875211 12
Q ss_pred CCeeEEEeCcchhhhc-cCCCChhhHH-----------HHHHHHHHhcCCCcEEEEEE
Q 028547 112 GSFDSVVDKGTLDSLL-CGSNSRQNAT-----------QMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~-~~~~~~~~~~-----------~~l~~~~~~L~pgG~~~~~~ 157 (207)
+..|+++.+..+.... ....+.+++. .+++.+.+.++++|.++.+.
T Consensus 90 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is 147 (262)
T 3ksu_A 90 GKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA 147 (262)
T ss_dssp CSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 4789998765432210 0011222222 33444556666778777654
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=82.13 E-value=3.5 Score=30.17 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=45.6
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEeccccccccC---------CCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQ---------TGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~~---------~~~fD 115 (207)
++||-.|++.| .++..+++.|+ +|++++.++...+...+.+.. ..++.++.+|+.+..... .+..|
T Consensus 12 ~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 90 (255)
T 1fmc_A 12 KCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVD 90 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 37777776543 33444555676 899999988766655444331 246788889988752111 13689
Q ss_pred EEEeCcc
Q 028547 116 SVVDKGT 122 (207)
Q Consensus 116 ~v~~~~~ 122 (207)
+|+.+..
T Consensus 91 ~vi~~Ag 97 (255)
T 1fmc_A 91 ILVNNAG 97 (255)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 8887644
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.95 E-value=5.9 Score=29.78 Aligned_cols=75 Identities=21% Similarity=0.281 Sum_probs=52.5
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccccc---------CCCCe
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
++++|--|++.| .++..+++.|+ +|+.++.+++.++...+.+... .++.++.+|+.+.... .-+..
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 106 (283)
T 3v8b_A 28 SPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHL 106 (283)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 347888887766 45556677777 9999999998877776665432 5688899998875211 12478
Q ss_pred eEEEeCcch
Q 028547 115 DSVVDKGTL 123 (207)
Q Consensus 115 D~v~~~~~l 123 (207)
|+++.+..+
T Consensus 107 D~lVnnAg~ 115 (283)
T 3v8b_A 107 DIVVANAGI 115 (283)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 998876544
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=81.93 E-value=4.7 Score=29.78 Aligned_cols=73 Identities=19% Similarity=0.347 Sum_probs=51.3
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
+++|-.|++.| .++..+++.|+ +|+.++.+++.++.+.+.+... .++.++.+|+.+.... ..+..|
T Consensus 7 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 85 (257)
T 3imf_A 7 KVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRID 85 (257)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 36777777665 45556677777 8999999998888777766533 4788899999875211 113689
Q ss_pred EEEeCcc
Q 028547 116 SVVDKGT 122 (207)
Q Consensus 116 ~v~~~~~ 122 (207)
+++.+..
T Consensus 86 ~lv~nAg 92 (257)
T 3imf_A 86 ILINNAA 92 (257)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9887654
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=81.77 E-value=12 Score=29.32 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=58.1
Q ss_pred CcEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---CCCce----E-EEeccccccccCCCCeeEEE
Q 028547 49 QRILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLK----Y-IKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 49 ~~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~~~~~----~-~~~d~~~~~~~~~~~fD~v~ 118 (207)
.+|.-||+|. +.++..+++.|. +|+..|.+++.++..++.-.. .+.+. + ...|..+. -...|+|+
T Consensus 30 mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea----~~~aDvVi 104 (356)
T 3k96_A 30 HPIAILGAGSWGTALALVLARKGQ-KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKAS----LEGVTDIL 104 (356)
T ss_dssp SCEEEECCSHHHHHHHHHHHTTTC-CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHH----HTTCCEEE
T ss_pred CeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHH----HhcCCEEE
Confidence 3899999986 345566666676 899999999888777664221 01111 1 11222221 13568888
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
..-. .......++++...++++..++..
T Consensus 105 laVp----------~~~~~~vl~~i~~~l~~~~ivvs~ 132 (356)
T 3k96_A 105 IVVP----------SFAFHEVITRMKPLIDAKTRIAWG 132 (356)
T ss_dssp ECCC----------HHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred ECCC----------HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6422 245678888888889887765543
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=81.77 E-value=0.86 Score=36.96 Aligned_cols=42 Identities=19% Similarity=0.437 Sum_probs=31.4
Q ss_pred CcEEEEcCCCchhhHHHHhc----C--CCcEEEEeCCHHHHHHHHHHc
Q 028547 49 QRILIVGCGNSAFSEGMVDD----G--YEDVVNVDISSVVIEAMMKKY 90 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~----~--~~~v~~~D~s~~~i~~~~~~~ 90 (207)
..|+|+|+|.|.++..++.. + ..+++.||+|+...+.-++++
T Consensus 139 ~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L 186 (432)
T 4f3n_A 139 RRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETL 186 (432)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHH
T ss_pred CeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHH
Confidence 39999999999988777653 2 247999999997655555443
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=81.58 E-value=3.3 Score=30.35 Aligned_cols=74 Identities=23% Similarity=0.386 Sum_probs=51.7
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++||-.|++.| .++..+++.|+ +|+.++.+++.++...+.+.. ..++.++.+|+.+.... ..+..|
T Consensus 10 k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 88 (253)
T 3qiv_A 10 KVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGID 88 (253)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 47888888766 45666777787 899999999877776665542 24678888999875211 113689
Q ss_pred EEEeCcch
Q 028547 116 SVVDKGTL 123 (207)
Q Consensus 116 ~v~~~~~l 123 (207)
+++.+..+
T Consensus 89 ~li~~Ag~ 96 (253)
T 3qiv_A 89 YLVNNAAI 96 (253)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99887543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=81.40 E-value=7.7 Score=31.67 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=58.1
Q ss_pred CccCHHHHHHhhCCC--CCCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc-
Q 028547 32 KYPSLAPLIKLYVPS--HHQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD- 107 (207)
Q Consensus 32 ~~~~~~~~l~~~~~~--~~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~- 107 (207)
..+.+..+...+.+. ..++|+-+|+|. |..+....+..+ ++..+|.+++-.+.+.+.+ ++..++++|..+..
T Consensus 217 ~~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~~~-~v~iIE~d~~r~~~la~~l---~~~~Vi~GD~td~~~ 292 (461)
T 4g65_A 217 ASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQTY-SVKLIERNLQRAEKLSEEL---ENTIVFCGDAADQEL 292 (461)
T ss_dssp ETTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTTTS-EEEEEESCHHHHHHHHHHC---TTSEEEESCTTCHHH
T ss_pred ccchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhhcC-ceEEEecCHHHHHHHHHHC---CCceEEeccccchhh
Confidence 344566666554332 235899998876 555554555555 8999999998888877776 46789999999852
Q ss_pred --ccCCCCeeEEEeC
Q 028547 108 --EFQTGSFDSVVDK 120 (207)
Q Consensus 108 --~~~~~~fD~v~~~ 120 (207)
...-+..|++++.
T Consensus 293 L~ee~i~~~D~~ia~ 307 (461)
T 4g65_A 293 LTEENIDQVDVFIAL 307 (461)
T ss_dssp HHHTTGGGCSEEEEC
T ss_pred HhhcCchhhcEEEEc
Confidence 1234578988874
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=81.32 E-value=14 Score=27.23 Aligned_cols=74 Identities=19% Similarity=0.265 Sum_probs=50.7
Q ss_pred CCcEEEEcCCC--c---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEecccccccc---------CC
Q 028547 48 HQRILIVGCGN--S---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEF---------QT 111 (207)
Q Consensus 48 ~~~vLdiG~G~--G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~---------~~ 111 (207)
++++|--|+++ | ..+..+++.|. +|+.++.+++.++.+.+.... ..++.++.+|+.+.... .-
T Consensus 6 gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (256)
T 4fs3_A 6 NKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV 84 (256)
T ss_dssp TCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 44778778543 4 45667778887 999999998777777665543 24688899998875211 13
Q ss_pred CCeeEEEeCcc
Q 028547 112 GSFDSVVDKGT 122 (207)
Q Consensus 112 ~~fD~v~~~~~ 122 (207)
+..|+++.+..
T Consensus 85 G~iD~lvnnAg 95 (256)
T 4fs3_A 85 GNIDGVYHSIA 95 (256)
T ss_dssp CCCSEEEECCC
T ss_pred CCCCEEEeccc
Confidence 57898887644
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=81.30 E-value=5.1 Score=29.60 Aligned_cols=74 Identities=18% Similarity=0.313 Sum_probs=51.7
Q ss_pred CcEEEEcC-CCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEecccccccc---------CCCC
Q 028547 49 QRILIVGC-GNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 49 ~~vLdiG~-G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
++||-.|+ |.| .++..+++.|+ +|+.++.+++.++...+.+... .++.++.+|+.+.... ..+.
T Consensus 23 k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 101 (266)
T 3o38_A 23 KVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAGR 101 (266)
T ss_dssp CEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhCC
Confidence 47888887 555 45566777787 8999999988777766655432 4788999999875211 1136
Q ss_pred eeEEEeCcch
Q 028547 114 FDSVVDKGTL 123 (207)
Q Consensus 114 fD~v~~~~~l 123 (207)
.|+++.+..+
T Consensus 102 id~li~~Ag~ 111 (266)
T 3o38_A 102 LDVLVNNAGL 111 (266)
T ss_dssp CCEEEECCCC
T ss_pred CcEEEECCCc
Confidence 8999877554
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=81.27 E-value=23 Score=30.90 Aligned_cols=99 Identities=14% Similarity=0.212 Sum_probs=66.3
Q ss_pred CcEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-------------CC-C--CceEEEeccccccccC
Q 028547 49 QRILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-------------NR-P--QLKYIKMDVRQMDEFQ 110 (207)
Q Consensus 49 ~~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-------------~~-~--~~~~~~~d~~~~~~~~ 110 (207)
++|--||+|+ +.++..++..|+ .|+..|++++.++.+++... .. . .......|...+
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l---- 391 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKEL---- 391 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGG----
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHH----
Confidence 4889999987 355666777788 99999999998877665331 00 0 111112222222
Q ss_pred CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
...|+|+-. +++.+ +-...+++++.++++|+.+|--.|.+-+
T Consensus 392 -~~aDlVIEA-V~E~l-------~iK~~vf~~le~~~~~~aIlASNTSsl~ 433 (742)
T 3zwc_A 392 -STVDLVVEA-VFEDM-------NLKKKVFAELSALCKPGAFLCTNTSALN 433 (742)
T ss_dssp -GSCSEEEEC-CCSCH-------HHHHHHHHHHHHHSCTTCEEEECCSSSC
T ss_pred -hhCCEEEEe-ccccH-------HHHHHHHHHHhhcCCCCceEEecCCcCC
Confidence 356888864 45544 7889999999999999988876664443
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=81.14 E-value=5.9 Score=30.43 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=52.8
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHH---ccC--CCCceEEEeccccccccCCCCeeEEEeCcc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKK---YSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~---~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~ 122 (207)
+|+-+|+|. +.++..+++.|. +|+.++-++ .+..++. ... .....+....+..........+|+|+..-.
T Consensus 4 kI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK 80 (320)
T 3i83_A 4 NILVIGTGAIGSFYGALLAKTGH-CVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIK 80 (320)
T ss_dssp EEEEESCCHHHHHHHHHHHHTTC-EEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCC
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecC
Confidence 788899986 455666666776 999999876 2444443 111 122222111111110011236899886422
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
-. .....++.+...+.++..++...
T Consensus 81 ~~----------~~~~~l~~l~~~l~~~t~Iv~~~ 105 (320)
T 3i83_A 81 VV----------EGADRVGLLRDAVAPDTGIVLIS 105 (320)
T ss_dssp CC----------TTCCHHHHHTTSCCTTCEEEEEC
T ss_pred CC----------ChHHHHHHHHhhcCCCCEEEEeC
Confidence 22 23456788888888887666543
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=81.03 E-value=14 Score=27.18 Aligned_cols=90 Identities=11% Similarity=0.239 Sum_probs=54.8
Q ss_pred CcEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+|.-+|+|. | .++..+.+.|+..++.+|.+++..+.+.+.. .+.. ..+..+. ....|+|+..-.
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~----g~~~-~~~~~~~----~~~~Dvvi~av~---- 77 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV----EAEY-TTDLAEV----NPYAKLYIVSLK---- 77 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT----TCEE-ESCGGGS----CSCCSEEEECCC----
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc----CCce-eCCHHHH----hcCCCEEEEecC----
Confidence 3788999974 3 3444555566623899999998877766653 2222 2233332 135799886422
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.......++.+...++++.+++-.+
T Consensus 78 ------~~~~~~v~~~l~~~~~~~~ivv~~s 102 (266)
T 3d1l_A 78 ------DSAFAELLQGIVEGKREEALMVHTA 102 (266)
T ss_dssp ------HHHHHHHHHHHHTTCCTTCEEEECC
T ss_pred ------HHHHHHHHHHHHhhcCCCcEEEECC
Confidence 1344677777877887776555433
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=80.93 E-value=4.2 Score=30.90 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=52.9
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCe
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
+++||-.|++.| .++..+++.|+ +|+.++.+++.++.+.+.+.. ..++.++.+|+.+.... ..+..
T Consensus 31 gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 109 (301)
T 3tjr_A 31 GRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGGV 109 (301)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence 347888888776 45566677787 899999999887777665542 25788899999885211 11368
Q ss_pred eEEEeCcch
Q 028547 115 DSVVDKGTL 123 (207)
Q Consensus 115 D~v~~~~~l 123 (207)
|+++.+..+
T Consensus 110 d~lvnnAg~ 118 (301)
T 3tjr_A 110 DVVFSNAGI 118 (301)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCc
Confidence 999877543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.87 E-value=5 Score=29.77 Aligned_cols=72 Identities=17% Similarity=0.313 Sum_probs=51.3
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCee
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
+++|--|++.| .++..+++.|+ +|+.++.+++.++...+.+.. ..++.++.+|+.+.... ..+..|
T Consensus 12 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 90 (264)
T 3ucx_A 12 KVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRVD 90 (264)
T ss_dssp CEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCCS
T ss_pred cEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCc
Confidence 47888888776 45566777787 899999998877776665442 25788899999885211 124789
Q ss_pred EEEeCc
Q 028547 116 SVVDKG 121 (207)
Q Consensus 116 ~v~~~~ 121 (207)
+++.+.
T Consensus 91 ~lv~nA 96 (264)
T 3ucx_A 91 VVINNA 96 (264)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 998765
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=80.66 E-value=4.5 Score=31.79 Aligned_cols=66 Identities=23% Similarity=0.344 Sum_probs=43.1
Q ss_pred CcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc--CCCCeeEEEeCc
Q 028547 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--QTGSFDSVVDKG 121 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~fD~v~~~~ 121 (207)
.+|+-+|||. |......+...+ +|+..|.+.+.++.+++ .+..+..|+.+...+ .-...|+|++..
T Consensus 17 mkilvlGaG~vG~~~~~~L~~~~-~v~~~~~~~~~~~~~~~------~~~~~~~d~~d~~~l~~~~~~~DvVi~~~ 85 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKDEF-DVYIGDVNNENLEKVKE------FATPLKVDASNFDKLVEVMKEFELVIGAL 85 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTS-EEEEEESCHHHHHHHTT------TSEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred cEEEEECCCHHHHHHHHHHhcCC-CeEEEEcCHHHHHHHhc------cCCcEEEecCCHHHHHHHHhCCCEEEEec
Confidence 4899999963 555554444445 89999999987776643 345566777654211 124679998753
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=80.56 E-value=2.9 Score=30.92 Aligned_cols=74 Identities=14% Similarity=0.209 Sum_probs=48.4
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEeccccccccC---------C-CCe
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQ---------T-GSF 114 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~~---------~-~~f 114 (207)
++||-.|++.| .++..+++.|+ +|++++.+++.++...+.+.. ..++.++.+|+.+..... - +..
T Consensus 10 k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~i 88 (260)
T 2ae2_A 10 CTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKL 88 (260)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 37887777655 44556666777 899999988776655444321 235778888988752110 1 578
Q ss_pred eEEEeCcch
Q 028547 115 DSVVDKGTL 123 (207)
Q Consensus 115 D~v~~~~~l 123 (207)
|+++.+..+
T Consensus 89 d~lv~~Ag~ 97 (260)
T 2ae2_A 89 NILVNNAGI 97 (260)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999876543
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=80.16 E-value=5.3 Score=29.83 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=49.6
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc--------CCCCeeEE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF--------QTGSFDSV 117 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~~fD~v 117 (207)
+++|-.|++.| .++..+++.|+ +|+.++.+++.++...+.+. .++.++.+|+.+.... ..+..|++
T Consensus 31 k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~l 107 (281)
T 3ppi_A 31 ASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELG--NRAEFVSTNVTSEDSVLAAIEAANQLGRLRYA 107 (281)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHTTSSEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 37888888776 45566677787 89999999988777766653 3688999998875211 12467888
Q ss_pred EeC
Q 028547 118 VDK 120 (207)
Q Consensus 118 ~~~ 120 (207)
+.+
T Consensus 108 v~~ 110 (281)
T 3ppi_A 108 VVA 110 (281)
T ss_dssp EEC
T ss_pred EEc
Confidence 876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 207 | ||||
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 4e-11 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 8e-09 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 4e-08 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 1e-06 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 1e-06 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 2e-06 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 3e-05 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 3e-05 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 5e-05 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 5e-05 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 2e-04 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 2e-04 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 5e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 5e-04 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 8e-04 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.002 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 0.002 |
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (139), Expect = 4e-11
Identities = 22/167 (13%), Positives = 51/167 (30%), Gaps = 16/167 (9%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSH-HQRILIVGCGNSAFSEGMVDDGYEDV 73
W +++ + F Q + L + ++ R+ CG + + D G+ V
Sbjct: 12 EWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SV 70
Query: 74 VNVDISSVVIEAMMKKYSNRPQLKYI--------------KMDVRQMDEFQTGSFDSVVD 119
V V+IS + I+ + + + I + + F +
Sbjct: 71 VGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKF 130
Query: 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRLG 166
D + + + ++ +L K Y+L +
Sbjct: 131 DMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP 177
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.9 bits (123), Expect = 8e-09
Identities = 20/152 (13%), Positives = 50/152 (32%), Gaps = 13/152 (8%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVV 74
W Y+ + L+ L R+L V CG S +V++G+
Sbjct: 29 VWQLYIGDTRSRTAEYKAW-----LLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTS 83
Query: 75 NVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD--------EFQTGSFDSVVDKGTLDSL 126
++ A+ ++++ R + + K + + + G + + L
Sbjct: 84 VDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHL 143
Query: 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
+ LK + +++ G+ ++
Sbjct: 144 PDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 49.2 bits (116), Expect = 4e-08
Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 16/144 (11%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVV 74
Y+ +Y D +AP R L +GCGN S + +GY+
Sbjct: 8 YFTEKYGLTRTHSDVLAAAKVVAP----------GRTLDLGCGNGRNSLYLAANGYDVTA 57
Query: 75 NVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ 134
D + + + + + V G +D ++ + L Q
Sbjct: 58 W-DKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFL-----EAQ 111
Query: 135 NATQMLKEVWRVLKDKGVYILVTY 158
++ + R K G ++V
Sbjct: 112 TIPGLIANMQRCTKPGGYNLIVAA 135
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 45.3 bits (106), Expect = 1e-06
Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 7/129 (5%)
Query: 33 YPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92
+ SL +IK R+L +G G + E + VD + E + S
Sbjct: 2 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQE-CIGVDATK---EMVEVASSF 57
Query: 93 RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGV 152
+ + +Q D D T + + + ++EV RVLK G
Sbjct: 58 AQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVR---KAVREVARVLKQDGR 114
Query: 153 YILVTYGAP 161
++LV + AP
Sbjct: 115 FLLVDHYAP 123
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.5 bits (106), Expect = 1e-06
Identities = 27/182 (14%), Positives = 62/182 (34%), Gaps = 11/182 (6%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVV 74
Y+D Y + + + K +R+L + CG + + + GYE
Sbjct: 11 YYDTIYRRRIERVKAEIDF--VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYE--- 65
Query: 75 NVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQ 134
+ + + M + + R + + +F + D T+ +
Sbjct: 66 ---VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEE 122
Query: 135 NATQMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVIEKLVVEEKSGHPI 194
+ ++ +V LK GV+I P + G WN + + ++++ + P
Sbjct: 123 DLRKLFSKVAEALKPGGVFITDF---PCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPA 179
Query: 195 WE 196
+
Sbjct: 180 VQ 181
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 44.9 bits (105), Expect = 2e-06
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 1/120 (0%)
Query: 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKY 98
LI+LY +L +GCG G + VDI+ V I + N +
Sbjct: 17 LIRLYTKRG-DSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFK 75
Query: 99 IKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
+ + + S ++ ++ + + R L+ G +I+
Sbjct: 76 VFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 41.5 bits (96), Expect = 3e-05
Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 23/189 (12%)
Query: 19 RYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYE-DVVNVD 77
R ++G + + + ++ + +L +GCG ++ D E +D
Sbjct: 58 RAFLDAGHYQPLRDA--IVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLD 115
Query: 78 ISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNAT 137
+ + +K + R + F S D+++
Sbjct: 116 V----SKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP-------------- 157
Query: 138 QMLKEVWRVLKDKGVYILVTYGAPIYRLGMLRDSCSWNIKLHVIEKLVVEEKSGHPIWEL 197
+E+ RV+K G I T G L L+ + LH +E + EL
Sbjct: 158 CKAEELARVVKPGGWVITATPGP--RHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAEL 215
Query: 198 TNPVPLEND 206
P+ L D
Sbjct: 216 CYPMRLRGD 224
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 3e-05
Identities = 19/182 (10%), Positives = 41/182 (22%), Gaps = 41/182 (22%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSH---HQRILIVGCGNSAFSEGMVDDGYE 71
Y Y+ + P + + ++ +G G + + D ++
Sbjct: 16 YLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQ 75
Query: 72 DVVNVDISSVVIEAMMKKYSNRP---QLKYIKMDVRQM---------------------- 106
D+ D + E + K P ++
Sbjct: 76 DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVL 135
Query: 107 ----------DEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILV 156
D V+ ++ C S L + +LK G +
Sbjct: 136 KCDVHLGNPLAPAVLPLADCVLTLLAMECACC---SLDAYRAALCNLASLLKPGGHLVTT 192
Query: 157 TY 158
Sbjct: 193 VT 194
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 40.7 bits (94), Expect = 5e-05
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 5/97 (5%)
Query: 15 YWDNRYAHESGPFDWYQKYPSL-----APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG 69
YW A SG + I R L G G ++ ++
Sbjct: 56 YWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL 115
Query: 70 YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM 106
Y ++ ++E ++ + P K+I +
Sbjct: 116 YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA 152
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 40.4 bits (93), Expect = 5e-05
Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 7/126 (5%)
Query: 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQ 95
LA L+++ ++ +L V G + + VV D++ +++
Sbjct: 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKK-VVAFDLTEDILKVARAFIEGNGH 62
Query: 96 LKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155
+ + T +V ++ N + E +RVLK G +L
Sbjct: 63 QQVEYVQGDAEQMPFTDERFHIVTCR------IAAHHFPNPASFVSEAYRVLKKGGQLLL 116
Query: 156 VTYGAP 161
V AP
Sbjct: 117 VDNSAP 122
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (90), Expect = 2e-04
Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 14/166 (8%)
Query: 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE 108
+ +L VGCG S G + V+ VD S ++ +AM N+ + + +
Sbjct: 37 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNK---LEDTITLIKGKI 93
Query: 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL---VTYGAPIYRL 165
+ VD + + +L + L G + +
Sbjct: 94 EEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDV 153
Query: 166 GMLRDSCSW-----NIKLHVIEKLVVEE---KSGHPIWELTNPVPL 203
D ++ K+ ++K V+ E + P ++ P +
Sbjct: 154 NKHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGI 199
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.6 bits (89), Expect = 2e-04
Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 18/168 (10%)
Query: 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQM 106
+ +L VG G G V+ ++ SS+ A+ +N + IK V ++
Sbjct: 35 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV 94
Query: 107 DEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI---LVTYGAPIY 163
+ D ++ + L +L + L G+ Y I
Sbjct: 95 ELPVE-KVDIIISEWMGYCL----FYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIE 149
Query: 164 RLGMLRDSCSW-----NIKLHVIEKLVVEE---KSGHPIWELTNPVPL 203
W + I+ + ++E P +TN +
Sbjct: 150 DRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLI 197
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 37.4 bits (85), Expect = 5e-04
Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 14/142 (9%)
Query: 38 PLIKLYVPSHH----QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR 93
++ Y S + R+L+ CG S + GY VV ++S +E + +
Sbjct: 7 KDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQ 65
Query: 94 PQL---------KYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVW 144
P + +++ D F + D D + + ++ +
Sbjct: 66 PHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLE 125
Query: 145 RVLKDKGVYILVTYGAPIYRLG 166
++ +L+T L
Sbjct: 126 ALMPQACSGLLITLEYDQALLE 147
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 37.6 bits (86), Expect = 5e-04
Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 8/126 (6%)
Query: 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQ 95
A L ++ RIL +G G+ D +D+SS+ ++
Sbjct: 22 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV 81
Query: 96 LKYIKMDVRQMDEFQ-TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154
+ + + D G + + + LK G+ +
Sbjct: 82 SERVHFIHNDAAGYVANEKCDVAACVGATWIA-------GGFAGAEELLAQSLKPGGIML 134
Query: 155 LVTYGA 160
+
Sbjct: 135 IGEPYW 140
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 37.2 bits (85), Expect = 8e-04
Identities = 18/141 (12%), Positives = 38/141 (26%), Gaps = 11/141 (7%)
Query: 20 YAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYE--DVVNVD 77
Y + + Y S + ++ + I+ GCG ++ E +D
Sbjct: 1 YLKNTRDLYYNDDYVSFL-VNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGID 59
Query: 78 ISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNAT 137
++ + + P E +D + L
Sbjct: 60 SGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFL-------LHMTTPE 111
Query: 138 QMLKEVWRVLKDKGVYILVTY 158
ML+++ +K G I
Sbjct: 112 TMLQKMIHSVKKGGKIICFEP 132
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 36.2 bits (82), Expect = 0.002
Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 8/132 (6%)
Query: 27 FDWYQKYPSLAPLIKLYVPSHH---QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVI 83
Y + I ++ L + CG +E + ++
Sbjct: 14 IRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLS 73
Query: 84 EAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEV 143
EA K S + + D+ ++ + + + + K V
Sbjct: 74 EAENKFRSQGLKPRLACQDISNLNINRKFDLITC-----CLDSTNYIIDSDDLKKYFKAV 128
Query: 144 WRVLKDKGVYIL 155
LK+ GV+I
Sbjct: 129 SNHLKEGGVFIF 140
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.7 bits (81), Expect = 0.002
Identities = 17/161 (10%), Positives = 50/161 (31%), Gaps = 26/161 (16%)
Query: 15 YWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYE--- 71
+ ++ H+ +K P + + ++ +IL +G G ++
Sbjct: 10 FLNHSTEHQCMQEFMDKKLPGI--IGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYP 67
Query: 72 ----DVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----------DEFQTGSFDSV 117
+ V+ S+ I + + L+ +K + ++ + +D +
Sbjct: 68 GVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFI 127
Query: 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158
L + ++ LK +L +++
Sbjct: 128 HMIQMLYYV-------KDIPATLKFFHSLLGTNAKMLIIVV 161
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 207 | |||
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.89 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.89 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.88 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.88 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.86 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.85 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.84 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.84 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.84 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.83 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.83 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.82 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.82 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.8 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.8 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.79 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.78 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.78 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.76 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.75 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.75 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.74 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.73 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.73 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.73 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.72 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.72 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.72 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.71 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.71 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.69 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.67 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.67 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.66 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.65 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.64 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.63 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.61 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.59 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.59 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.59 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.57 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.57 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.57 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.56 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.56 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.55 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.53 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.52 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.51 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.47 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.46 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.46 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.44 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.44 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.43 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.42 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.41 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.41 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.37 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.37 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.37 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.36 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.35 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.35 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.31 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.18 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.18 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 99.16 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.15 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 99.12 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.12 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 99.09 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 99.08 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.08 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 99.06 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 99.06 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.05 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 99.04 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.03 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 99.0 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.0 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.94 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.92 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.87 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.76 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.73 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.72 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.71 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.71 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.65 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.62 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.6 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.46 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.34 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.34 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.26 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.18 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.14 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.02 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.48 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.47 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.46 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.34 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.26 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 97.26 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.14 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.13 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 96.98 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.91 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.88 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.85 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.7 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.69 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.65 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.61 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.54 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.45 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.42 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.31 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 96.31 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 96.3 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 96.27 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.27 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.23 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.21 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.19 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.11 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.04 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.01 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.53 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 94.33 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.19 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.02 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 93.98 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.92 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 93.52 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.49 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 93.45 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 93.41 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.37 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.36 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 93.01 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 92.9 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 92.84 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 92.79 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.74 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 92.7 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 92.62 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.61 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 92.46 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 92.46 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 92.15 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 92.06 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 91.32 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 91.0 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 90.9 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 90.46 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 89.93 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 89.93 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 89.65 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 89.64 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 89.35 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 89.23 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 89.19 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 89.17 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 88.98 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 88.9 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 88.82 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 88.58 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 88.42 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 88.18 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 87.6 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 87.45 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 86.65 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 86.54 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 86.49 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 85.51 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 85.25 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 84.98 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 84.83 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 84.16 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 84.1 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 83.87 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 83.86 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 83.6 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 83.18 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 83.1 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 82.91 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 82.71 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 82.48 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 82.3 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 82.29 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 81.35 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 80.49 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 80.11 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 80.05 |
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3.6e-23 Score=154.47 Aligned_cols=148 Identities=17% Similarity=0.272 Sum_probs=122.1
Q ss_pred CCCCCChhchhhhhcccCCceeeecCccCHHHHHHhhCC-CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHH
Q 028547 7 TQAYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA 85 (207)
Q Consensus 7 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~ 85 (207)
.+.-...++|+++|.+....|.+......+.+.+..++. +.+.+|||+|||+|..+..+++.|+ +|+|+|+|+.+|+.
T Consensus 4 ~~~~~~~e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~ 82 (229)
T d2bzga1 4 KNQVLTLEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQE 82 (229)
T ss_dssp TTCCCCHHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred ccccCCHHHHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHH
Confidence 445566789999998887666655556667666655433 3445999999999999999999999 99999999999999
Q ss_pred HHHHccC-------------------CCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHh
Q 028547 86 MMKKYSN-------------------RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRV 146 (207)
Q Consensus 86 ~~~~~~~-------------------~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 146 (207)
++++... ..++.+.++|+.++.+...+.||+|+...+++++ +.+....+++++.++
T Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~-----~~~~r~~~~~~~~~~ 157 (229)
T d2bzga1 83 FFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAI-----NPGDRKCYADTMFSL 157 (229)
T ss_dssp HHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTS-----CGGGHHHHHHHHHHT
T ss_pred HHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEec-----cchhhHHHHHHHHhh
Confidence 9887542 1368899999999866678899999999999998 678899999999999
Q ss_pred cCCCcEEEEEEeCC
Q 028547 147 LKDKGVYILVTYGA 160 (207)
Q Consensus 147 L~pgG~~~~~~~~~ 160 (207)
|+|||.+++.++..
T Consensus 158 LkpgG~~~l~~~~~ 171 (229)
T d2bzga1 158 LGKKFQYLLCVLSY 171 (229)
T ss_dssp EEEEEEEEEEEEEC
T ss_pred cCCcceEEEEEccc
Confidence 99999988887643
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.89 E-value=6e-23 Score=153.19 Aligned_cols=116 Identities=23% Similarity=0.350 Sum_probs=100.8
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc--CCCCceEEEeccccccccCCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~ 113 (207)
+.++++...-+++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++.. ..+++.|+++|+.++ ++++++
T Consensus 4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l-~~~~~~ 81 (231)
T d1vl5a_ 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-PFTDER 81 (231)
T ss_dssp HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-CSCTTC
T ss_pred HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccccccccccccccccc-cccccc
Confidence 55666665555555999999999999999999876 99999999999999998865 337899999999998 688999
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
||+|++..+++|+ .++..++++++++|+|||.+++.++..
T Consensus 82 fD~v~~~~~l~~~-------~d~~~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 82 FHIVTCRIAAHHF-------PNPASFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp EEEEEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ccccccccccccc-------CCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9999999999999 889999999999999999999987544
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.88 E-value=1.6e-22 Score=150.19 Aligned_cols=117 Identities=30% Similarity=0.489 Sum_probs=101.6
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEeccccccccCCCC
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~ 113 (207)
.+.+++..++++.. +|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++... ..++.+++.|+.++ ++++++
T Consensus 26 ~~~~~~~~~l~~~~-~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l-~~~~~~ 102 (226)
T d1ve3a1 26 TLEPLLMKYMKKRG-KVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL-SFEDKT 102 (226)
T ss_dssp HHHHHHHHSCCSCC-EEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC-CSCTTC
T ss_pred HHHHHHHHhcCCCC-EEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccccccccccccccc-cccCcC
Confidence 35666767777776 999999999999999999877 999999999999999988753 25788999999998 688999
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
||+|++..+++|+ +..++..+++++.++|+|||.+++....
T Consensus 103 fD~I~~~~~l~~~-----~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 103 FDYVIFIDSIVHF-----EPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EEEEEEESCGGGC-----CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ceEEEEecchhhC-----ChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 9999999999998 4568889999999999999999887643
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=2.3e-22 Score=150.53 Aligned_cols=113 Identities=20% Similarity=0.296 Sum_probs=98.6
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeE
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
+++...-+++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++... ..++.++++|+.+. ++++++||+
T Consensus 8 l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~ 85 (234)
T d1xxla_ 8 MIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-PFPDDSFDI 85 (234)
T ss_dssp HHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-CSCTTCEEE
T ss_pred HHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccccccccccccccc-cccccccce
Confidence 34444445556999999999999999999875 999999999999999988653 36899999999997 789999999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
|++..+++|+ .++..+++++.++|+|||.+++..+..
T Consensus 86 v~~~~~l~~~-------~d~~~~l~~~~r~LkpgG~~~~~~~~~ 122 (234)
T d1xxla_ 86 ITCRYAAHHF-------SDVRKAVREVARVLKQDGRFLLVDHYA 122 (234)
T ss_dssp EEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred eeeeceeecc-------cCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence 9999999998 789999999999999999999976543
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.86 E-value=4.6e-21 Score=139.85 Aligned_cols=132 Identities=18% Similarity=0.268 Sum_probs=104.8
Q ss_pred CCChhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHH
Q 028547 10 YGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKK 89 (207)
Q Consensus 10 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~ 89 (207)
..+..||.+.|...... .+++.......+++|||+|||+|.++..+++.++ +|+++|+|+.+++.++++
T Consensus 3 ~~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~ 71 (198)
T d2i6ga1 3 VRDENYFTEKYGLTRTH----------SDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERI 71 (198)
T ss_dssp CCSHHHHHHHHCBCCCC----------HHHHHHHTTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred cchHHHHhcccCCCCCH----------HHHHHHcccCCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHH
Confidence 45567777777544221 2334333222334999999999999999999988 999999999999999887
Q ss_pred ccC--CCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 90 YSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 90 ~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
... ..++.+...|+.+.. .+++||+|++..+++++ +......++++++++|+|||.+++.++.
T Consensus 72 ~~~~~~~~~~~~~~d~~~~~--~~~~fD~I~~~~~~~~~-----~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 72 KAAEGLDNLQTDLVDLNTLT--FDGEYDFILSTVVMMFL-----EAQTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp HHHTTCTTEEEEECCTTTCC--CCCCEEEEEEESCGGGS-----CTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred hhhccccchhhhheeccccc--ccccccEEEEeeeeecC-----CHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 653 257899999999874 46889999999999998 5678889999999999999999997753
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=1.1e-21 Score=147.39 Aligned_cols=109 Identities=24% Similarity=0.431 Sum_probs=93.4
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCee
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
+..++....+++. +|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++... .++.+|+.++ ++++++||
T Consensus 32 ~~~~~~~~~~~~~-~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~----~~~~~~~~~l-~~~~~~fD 104 (246)
T d2avna1 32 IGSFLEEYLKNPC-RVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK----NVVEAKAEDL-PFPSGAFE 104 (246)
T ss_dssp HHHHHHHHCCSCC-EEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS----CEEECCTTSC-CSCTTCEE
T ss_pred HHHHHHHhcCCCC-EEEEECCCCchhcccccccce-EEEEeeccccccccccccccc----cccccccccc-cccccccc
Confidence 3445555666555 999999999999999999987 999999999999999998533 4778899888 68889999
Q ss_pred EEEeC-cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 116 SVVDK-GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 116 ~v~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+|++. .+++|+ .+...+++++.++|+|||.+++.+.
T Consensus 105 ~ii~~~~~~~~~-------~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 105 AVLALGDVLSYV-------ENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp EEEECSSHHHHC-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeeecchhhhh-------hhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 99974 688988 7889999999999999999998764
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.1e-21 Score=145.71 Aligned_cols=104 Identities=14% Similarity=0.217 Sum_probs=91.6
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+|||+|||+|.++..+++.++.+|+|+|+|+.+++.|++++... .++.|.++|+.++ +++.++||+|++..+++|+
T Consensus 62 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~-~~~~~~fD~I~~~~~l~h~ 140 (222)
T d2ex4a1 62 SCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF-TPEPDSYDVIWIQWVIGHL 140 (222)
T ss_dssp SEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC-CCCSSCEEEEEEESCGGGS
T ss_pred CEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccc-ccccccccccccccccccc
Confidence 489999999999999987776668999999999999999987642 5679999999998 4678999999999999998
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+..+...++++++++|+|||.+++.+.
T Consensus 141 -----~~~~~~~~l~~i~~~Lk~~G~~~i~~~ 167 (222)
T d2ex4a1 141 -----TDQHLAEFLRRCKGSLRPNGIIVIKDN 167 (222)
T ss_dssp -----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----hhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence 445667899999999999999999764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.84 E-value=1.1e-20 Score=137.36 Aligned_cols=120 Identities=16% Similarity=0.232 Sum_probs=101.0
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--------------CCceEEE
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--------------PQLKYIK 100 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--------------~~~~~~~ 100 (207)
.+.+.+..+..+++.+|||+|||+|.++..+++.|+ +|+|+|+|+.+++.++++.... .++.|++
T Consensus 8 ~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T d1pjza_ 8 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 86 (201)
T ss_dssp HHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence 355666666555556999999999999999999998 9999999999999999986532 3568889
Q ss_pred eccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 101 MDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 101 ~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+|+.++.+.....||+|++..+++++ +..+....+++++++|||||.+++..+..
T Consensus 87 ~d~~~l~~~~~~~~D~i~~~~~l~~l-----~~~~~~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 87 GDFFALTARDIGHCAAFYDRAAMIAL-----PADMRERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGS-----CHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred ccccccccccccceeEEEEEeeeEec-----chhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence 99988755566789999999999998 66778999999999999999998877544
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.84 E-value=2e-20 Score=140.96 Aligned_cols=114 Identities=21% Similarity=0.409 Sum_probs=95.5
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEeccccccccCCCCe
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~f 114 (207)
+..++.....++.++|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++.. ..++.+.++|+.++ +++ ++|
T Consensus 30 ~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l-~~~-~~f 106 (251)
T d1wzna1 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEI-AFK-NEF 106 (251)
T ss_dssp HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGC-CCC-SCE
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccccchheehhhhhc-ccc-ccc
Confidence 34455555666666999999999999999999987 999999999999999998763 35799999999998 444 689
Q ss_pred eEEEeC-cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDK-GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+|++. .+++++ +..+...+|++++++|+|||.+++..
T Consensus 107 D~I~~~~~~~~~~-----~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 107 DAVTMFFSTIMYF-----DEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp EEEEECSSGGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chHhhhhhhhhcC-----ChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 999985 566665 45688899999999999999999865
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.83 E-value=1.8e-20 Score=141.67 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=98.3
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEE
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v 117 (207)
.+++.+......+|||+|||+|.++..++..++.+|+++|+++.+++.|++++...++++|.+.|+.++ ++++++||+|
T Consensus 84 ~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~I 162 (254)
T d1xtpa_ 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA-TLPPNTYDLI 162 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGC-CCCSSCEEEE
T ss_pred HHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEcccccc-ccCCCccceE
Confidence 344444444556999999999999998887666689999999999999999987767789999999998 4678899999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++..+++|+ +..+...+++++.++|+|||.+++...
T Consensus 163 ~~~~vl~hl-----~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 163 VIQWTAIYL-----TDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp EEESCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Eeecccccc-----chhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 999999998 555677999999999999999999764
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.83 E-value=3e-20 Score=140.33 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=97.3
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCee
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD 115 (207)
++..+.++.. +|||+|||+|..+..+++.+.++|+|+|+|+.+++.|+++.... .++.|.++|+........++||
T Consensus 17 lI~~~~~~~~-~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD 95 (252)
T d1ri5a_ 17 LIRLYTKRGD-SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFD 95 (252)
T ss_dssp HHHHHCCTTC-EEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEE
T ss_pred HHHHhCCCcC-EEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccce
Confidence 4455556665 99999999999999999988778999999999999999886532 4788999999776323567899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+|++..+++++ ..+.++...+++++.++|+|||.|++.++..
T Consensus 96 ~V~~~~~l~~~---~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~ 137 (252)
T d1ri5a_ 96 VISSQFSFHYA---FSTSESLDIAQRNIARHLRPGGYFIMTVPSR 137 (252)
T ss_dssp EEEEESCGGGG---GSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EEEEcceeeec---CCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence 99999999986 2245678899999999999999999877543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.82 E-value=2.3e-20 Score=143.23 Aligned_cols=104 Identities=14% Similarity=0.148 Sum_probs=91.7
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++... ..++.|.++|+.++ ++++++||+|++..++
T Consensus 67 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-~~~~~sfD~V~~~~~l 145 (282)
T d2o57a1 67 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-PCEDNSYDFIWSQDAF 145 (282)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-SSCTTCEEEEEEESCG
T ss_pred CCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccc-cccccccchhhccchh
Confidence 3349999999999999999886323999999999999999987652 15799999999998 7889999999999999
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+|+ .+...++++++++|+|||.+++.++
T Consensus 146 ~h~-------~d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 146 LHS-------PDKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp GGC-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhc-------cCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 998 7889999999999999999999764
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.82 E-value=6.5e-20 Score=137.96 Aligned_cols=112 Identities=16% Similarity=0.231 Sum_probs=91.1
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEeccccccccCCCCeeE
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
..+.....++ ++|||+|||+|.++..+++.+. +++|+|+|+.|++.|+++... ..+++|+++|+.++. ..++||+
T Consensus 29 ~~~~~~~~~~-~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~ 104 (246)
T d1y8ca_ 29 EKCVENNLVF-DDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN--INRKFDL 104 (246)
T ss_dssp HHHHTTTCCT-TEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC--CSCCEEE
T ss_pred HHHHHhCCCC-CeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCccceeeccchhhhc--ccccccc
Confidence 3444433344 4999999999999999999987 999999999999999988653 358999999999883 3568999
Q ss_pred EEeC-cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 117 VVDK-GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 117 v~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+|. .+++++ ...++...++++++++|+|||.|++..
T Consensus 105 i~~~~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 105 ITCCLDSTNYI----IDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp EEECTTGGGGC----CSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cceeeeeeecc----CCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 9974 455554 245788999999999999999999754
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.80 E-value=2.6e-19 Score=132.88 Aligned_cols=114 Identities=17% Similarity=0.246 Sum_probs=92.2
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC---CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCC
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG---YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQT 111 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~ 111 (207)
.++..+.++.. +|||+|||+|..+..+++.. ..+|+|+|+|+.|++.|+++.... .++.+...|..+. +.
T Consensus 31 ~~~~~~~~~~~-~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~---~~ 106 (225)
T d1im8a_ 31 MLAERFVTADS-NVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV---EI 106 (225)
T ss_dssp HHHHHHCCTTC-EEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC---CC
T ss_pred HHHHHhcCCCC-EEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc---cc
Confidence 34445555665 99999999999999998742 239999999999999999986532 4566677776655 45
Q ss_pred CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
..+|+|++..+++++ +.++...++++++++|+|||.+++.+...
T Consensus 107 ~~~d~i~~~~~l~~~-----~~~d~~~~l~~i~~~LkpgG~li~~~~~~ 150 (225)
T d1im8a_ 107 KNASMVILNFTLQFL-----PPEDRIALLTKIYEGLNPNGVLVLSEKFR 150 (225)
T ss_dssp CSEEEEEEESCGGGS-----CGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ccceeeEEeeecccc-----ChhhHHHHHHHHHHhCCCCceeecccccc
Confidence 689999999999987 66799999999999999999999987543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.2e-19 Score=136.48 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=94.5
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~ 112 (207)
+..+.+.+.-+++.+|||||||+|.++..+++.....|+|+|+|+.+++.++++.... .+++|..+|+.++ ..++
T Consensus 22 ~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~--~~~~ 99 (245)
T d1nkva_ 22 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY--VANE 99 (245)
T ss_dssp HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC--CCSS
T ss_pred HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc--cccC
Confidence 3444444434444599999999999999998763349999999999999998876532 4689999999987 3678
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+||+|++..+++|+ .+...++++++++|||||.+++...
T Consensus 100 ~fD~v~~~~~~~~~-------~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 100 KCDVAACVGATWIA-------GGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp CEEEEEEESCGGGT-------SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ceeEEEEEehhhcc-------CCHHHHHHHHHHHcCcCcEEEEEec
Confidence 99999999999998 7889999999999999999999764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.79 E-value=2.7e-19 Score=132.88 Aligned_cols=99 Identities=18% Similarity=0.300 Sum_probs=89.1
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLC 128 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~ 128 (207)
++|||||||+|.++..+++.+. +|+|+|+|+++++.++++... ++.+.++++.+.. .+++||+|++..+++|+
T Consensus 22 ~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~~--~~~~~~~~~~~~~--~~~~fD~I~~~~vleh~-- 94 (225)
T d2p7ia1 22 GNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD--GITYIHSRFEDAQ--LPRRYDNIVLTHVLEHI-- 94 (225)
T ss_dssp SCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS--CEEEEESCGGGCC--CSSCEEEEEEESCGGGC--
T ss_pred CcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccccc--ccccccccccccc--cccccccccccceeEec--
Confidence 3899999999999999999877 899999999999999988654 7899999998873 46799999999999999
Q ss_pred CCCChhhHHHHHHHHH-HhcCCCcEEEEEEeC
Q 028547 129 GSNSRQNATQMLKEVW-RVLKDKGVYILVTYG 159 (207)
Q Consensus 129 ~~~~~~~~~~~l~~~~-~~L~pgG~~~~~~~~ 159 (207)
.++..+++++. ++|+|||.+++.+..
T Consensus 95 -----~d~~~~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 95 -----DDPVALLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp -----SSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred -----CCHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 88999999998 789999999998753
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=1.1e-18 Score=127.90 Aligned_cols=94 Identities=22% Similarity=0.295 Sum_probs=84.9
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhccC
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCG 129 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~ 129 (207)
+|||||||+|.++..+. +++|+|+|+.+++.++++ ++.++++|+.++ ++++++||+|++..+++|+
T Consensus 39 ~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~-----~~~~~~~d~~~l-~~~~~~fD~I~~~~~l~h~--- 104 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR-----GVFVLKGTAENL-PLKDESFDFALMVTTICFV--- 104 (208)
T ss_dssp CEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT-----TCEEEECBTTBC-CSCTTCEEEEEEESCGGGS---
T ss_pred eEEEECCCCcccccccc-----eEEEEeCChhhccccccc-----cccccccccccc-ccccccccccccccccccc---
Confidence 89999999999887763 568999999999999875 689999999998 6788999999999999999
Q ss_pred CCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 130 SNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 130 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.++..++++++++|+|||.+++.++...
T Consensus 105 ----~d~~~~l~~~~~~L~pgG~l~i~~~~~~ 132 (208)
T d1vlma_ 105 ----DDPERALKEAYRILKKGGYLIVGIVDRE 132 (208)
T ss_dssp ----SCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred ----cccccchhhhhhcCCCCceEEEEecCCc
Confidence 7889999999999999999999886554
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.78 E-value=5.7e-19 Score=127.37 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=92.5
Q ss_pred CccCHHHH-HHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccc
Q 028547 32 KYPSLAPL-IKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMD 107 (207)
Q Consensus 32 ~~~~~~~~-l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~ 107 (207)
..+.+..+ +..+...++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++... .+++++++|+.+.
T Consensus 17 t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~- 94 (186)
T d1l3ia_ 17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA- 94 (186)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH-
T ss_pred ChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc-
Confidence 34455444 4444455556999999999999999998754 9999999999999999987633 5899999999887
Q ss_pred ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 108 EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 108 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
......||.|++....++ ...+++.+.+.|+|||.+++...
T Consensus 95 ~~~~~~~D~v~~~~~~~~----------~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 95 LCKIPDIDIAVVGGSGGE----------LQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp HTTSCCEEEEEESCCTTC----------HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccccCCcCEEEEeCcccc----------chHHHHHHHHHhCcCCEEEEEee
Confidence 356789999998866554 36789999999999999887654
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=4.1e-18 Score=129.56 Aligned_cols=106 Identities=24% Similarity=0.386 Sum_probs=88.3
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeE
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
..+....+.++.+|||+|||+|.++..+++.+. .+++|+|+|+.+++.++++. +++.|.++|+.++ ++++++||+
T Consensus 75 ~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~---~~~~~~~~d~~~l-~~~~~sfD~ 150 (268)
T d1p91a_ 75 AQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRL-PFSDTSMDA 150 (268)
T ss_dssp HHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTSC-SBCTTCEEE
T ss_pred HHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc---ccccceeeehhhc-cCCCCCEEE
Confidence 334444455555999999999999999999864 48999999999999999876 5789999999998 789999999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|++...+++ ++++.++|||||.+++.++...
T Consensus 151 v~~~~~~~~--------------~~e~~rvLkpgG~l~~~~p~~~ 181 (268)
T d1p91a_ 151 IIRIYAPCK--------------AEELARVVKPGGWVITATPGPR 181 (268)
T ss_dssp EEEESCCCC--------------HHHHHHHEEEEEEEEEEEECTT
T ss_pred EeecCCHHH--------------HHHHHHHhCCCcEEEEEeeCCc
Confidence 998766554 4578999999999999987554
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.75 E-value=6.8e-18 Score=128.84 Aligned_cols=114 Identities=11% Similarity=0.157 Sum_probs=91.8
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~ 112 (207)
+..+++.+..+++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++.... ..+.+...|..+. ++
T Consensus 41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~----~~ 116 (280)
T d2fk8a1 41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----AE 116 (280)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----CC
T ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh----cc
Confidence 3444555444555699999999999999998763349999999999999999987643 3456666665544 46
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+||.|++..+++|+ +..+...++++++++|||||.+++.+.
T Consensus 117 ~fD~i~si~~~eh~-----~~~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 117 PVDRIVSIEAFEHF-----GHENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp CCSEEEEESCGGGT-----CGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred chhhhhHhhHHHHh-----hhhhHHHHHHHHHhccCCCceEEEEEe
Confidence 89999999999998 667889999999999999999999764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.75 E-value=3e-18 Score=131.16 Aligned_cols=102 Identities=14% Similarity=0.219 Sum_probs=89.0
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
++.+|||+|||+|.++..+++... .+|+|+|+|+.+++.+++++... .++.|.+.|+.++ ++ .++||+|++..++
T Consensus 27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~-~~-~~~fD~v~~~~~l 104 (281)
T d2gh1a1 27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-EL-NDKYDIAICHAFL 104 (281)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CC-SSCEEEEEEESCG
T ss_pred CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccc-cc-cCCceEEEEehhh
Confidence 334999999999999999988532 38999999999999999987754 4789999999987 44 4679999999999
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|+ .++..++++++++|||||.+++.+
T Consensus 105 ~~~-------~d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 105 LHM-------TTPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp GGC-------SSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hcC-------CCHHHHHHHHHHHcCcCcEEEEEE
Confidence 998 788999999999999999999876
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.74 E-value=2.5e-17 Score=119.37 Aligned_cols=145 Identities=14% Similarity=0.203 Sum_probs=103.3
Q ss_pred CCCCCCChhchhhhhcccCCceeeec---CccC---HHH-HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeC
Q 028547 6 TTQAYGEPWYWDNRYAHESGPFDWYQ---KYPS---LAP-LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDI 78 (207)
Q Consensus 6 ~~~~~~~~~~w~~~~~~~~~~~~~~~---~~~~---~~~-~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~ 78 (207)
.+....+..+|+..+......|.-.. .... -.+ +++.+...++++|||+|||+|.++..+++.+. +++++|+
T Consensus 4 ~p~~~~~~~~~~~~~~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~ 82 (194)
T d1dusa_ 4 KPTTKSDVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVK-STTMADI 82 (194)
T ss_dssp CCCSCCCEEEEEEEETTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEES
T ss_pred CCCCccceEEEEEEECCeeEEEEcCCCccCCCCcCHHHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc-ccceeee
Confidence 34566666666666654422221110 0111 122 33344344446999999999999999998765 9999999
Q ss_pred CHHHHHHHHHHccC----CCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 79 SSVVIEAMMKKYSN----RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 79 s~~~i~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
++.+++.+++++.. ..++++...|+.+. .++++||+|+++.++++. .+....+++++.++|+|||.++
T Consensus 83 s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~--~~~~~fD~Ii~~~p~~~~------~~~~~~~l~~~~~~LkpgG~l~ 154 (194)
T d1dusa_ 83 NRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN--VKDRKYNKIITNPPIRAG------KEVLHRIIEEGKELLKDNGEIW 154 (194)
T ss_dssp CHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT--CTTSCEEEEEECCCSTTC------HHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccchhHHHHHHHhCCccceEEEEEcchhhh--hccCCceEEEEcccEEec------chhhhhHHHHHHHhcCcCcEEE
Confidence 99999999987652 24688999998774 467899999999887753 3456789999999999999998
Q ss_pred EEEeC
Q 028547 155 LVTYG 159 (207)
Q Consensus 155 ~~~~~ 159 (207)
++...
T Consensus 155 i~~~~ 159 (194)
T d1dusa_ 155 VVIQT 159 (194)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 86643
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=1.5e-17 Score=127.35 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=92.5
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~ 112 (207)
+..+++.+..+++.+|||||||.|.++..+++....+|+|+++|++.++.++++.... ..+.+...|.. ..++
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~----~~~~ 125 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE----EFDE 125 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG----GCCC
T ss_pred HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc----cccc
Confidence 3344445545555699999999999999998753349999999999999998876632 35666666643 3467
Q ss_pred CeeEEEeCcchhhhccC--CCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 113 SFDSVVDKGTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
+||.|++..++.|+... ....++...++++++++|+|||.+++.++..
T Consensus 126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~ 175 (291)
T d1kpia_ 126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 175 (291)
T ss_dssp CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence 89999999999998211 0123678999999999999999999987653
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=6.7e-18 Score=126.83 Aligned_cols=109 Identities=14% Similarity=0.184 Sum_probs=88.1
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEeccccccccCCCCe
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~f 114 (207)
+.+.+.....+.. +|||+|||+|.++..+++.|. +|+|+|+++.+++.++++... ..++++.++|+.+. .+.++|
T Consensus 110 ~l~~l~~~~~~g~-~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~--~~~~~f 185 (254)
T d2nxca1 110 ALKALARHLRPGD-KVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA--LPFGPF 185 (254)
T ss_dssp HHHHHHHHCCTTC-EEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH--GGGCCE
T ss_pred HHHHHHhhcCccC-EEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEecccccc--cccccc
Confidence 3444555554444 999999999999999999886 899999999999999998763 34678899888765 456899
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|+|+++...+ ....+++.+.++|||||.++++.+
T Consensus 186 D~V~ani~~~----------~l~~l~~~~~~~LkpGG~lilSgi 219 (254)
T d2nxca1 186 DLLVANLYAE----------LHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp EEEEEECCHH----------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhhccccc----------cHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999875444 447788999999999999998764
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2e-18 Score=130.35 Aligned_cols=149 Identities=14% Similarity=0.123 Sum_probs=100.0
Q ss_pred CCCChhchhhhhcccCCceeeecCccCHHHHHHhhCC---CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHH
Q 028547 9 AYGEPWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVP---SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEA 85 (207)
Q Consensus 9 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~ 85 (207)
.|+.++||+.+|......+......+.+...+..... .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.
T Consensus 10 ~f~~~~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~ 89 (257)
T d2a14a1 10 HFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREE 89 (257)
T ss_dssp HCCHHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHH
T ss_pred hcChHHHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHH
Confidence 3566789998887664433211101111111222111 2234999999999999888887766689999999999999
Q ss_pred HHHHccCCC-Cc-------------------------------eEEEecccc---ccccCCCCeeEEEeCcchhhhccCC
Q 028547 86 MMKKYSNRP-QL-------------------------------KYIKMDVRQ---MDEFQTGSFDSVVDKGTLDSLLCGS 130 (207)
Q Consensus 86 ~~~~~~~~~-~~-------------------------------~~~~~d~~~---~~~~~~~~fD~v~~~~~l~~~~~~~ 130 (207)
+++++.... .. .....+... ..+++.++||+|++..+++++ .
T Consensus 90 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~---~ 166 (257)
T d2a14a1 90 LEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECA---C 166 (257)
T ss_dssp HHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH---C
T ss_pred HHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHh---c
Confidence 998865321 11 011111111 124567899999999999998 2
Q ss_pred CChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 131 NSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 131 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
...++...++++++++|||||.+++.+...
T Consensus 167 ~~~~~~~~~l~~i~~~LkpGG~li~~~~~~ 196 (257)
T d2a14a1 167 CSLDAYRAALCNLASLLKPGGHLVTTVTLR 196 (257)
T ss_dssp SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred ccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence 234688899999999999999999987543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.72 E-value=4.1e-17 Score=124.53 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=92.6
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCe
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~f 114 (207)
.+++.+..+++.+|||||||.|.++..+++...++|+|+++|+..++.++++.... .++++..+|..+. +++|
T Consensus 53 ~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~----~~~f 128 (285)
T d1kpga_ 53 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----DEPV 128 (285)
T ss_dssp HHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----CCCC
T ss_pred HHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc----cccc
Confidence 34444444555699999999999999988763349999999999999999876532 5788888888766 3689
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
|.|++..++.|+ +..+...+++++.++|+|||.+++.++.
T Consensus 129 D~i~si~~~eh~-----~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 129 DRIVSIGAFEHF-----GHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp SEEEEESCGGGT-----CTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred cceeeehhhhhc-----CchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 999999999998 5567789999999999999999997754
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=9.7e-18 Score=124.66 Aligned_cols=114 Identities=14% Similarity=0.166 Sum_probs=88.3
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccc-cccCCCCe
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQM-DEFQTGSF 114 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~-~~~~~~~f 114 (207)
.+.+.......+++|||||||+|..+..+++.+..+++++|+|+.+++.++++.... .++.++..++... .+++.++|
T Consensus 43 ~~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 122 (229)
T d1zx0a1 43 MHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHF 122 (229)
T ss_dssp HHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCE
T ss_pred HHHHHHhhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 334443334444599999999999999999876568999999999999999987753 4577777777654 34677899
Q ss_pred eEEEeC-----cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDK-----GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~-----~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|.|+.. ..++++ .+...++++++++|||||.|++..
T Consensus 123 D~i~fD~~~~~~~~~~~-------~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 123 DGILYDTYPLSEETWHT-------HQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp EEEEECCCCCBGGGTTT-------HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cceeecccccccccccc-------cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 999843 334444 788999999999999999998743
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=2.1e-17 Score=127.14 Aligned_cols=111 Identities=21% Similarity=0.308 Sum_probs=86.0
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC------CCceEEEecccccc--ccCCCCeeEEE
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR------PQLKYIKMDVRQMD--EFQTGSFDSVV 118 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~------~~~~~~~~d~~~~~--~~~~~~fD~v~ 118 (207)
+.++|||+|||+|.++..+++.|. +|+|+|+|+.+++.|+++.... ....+...++.... ....++||.|+
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~ 134 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI 134 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEE
Confidence 345999999999999999999987 9999999999999998876422 13345555555431 12357899998
Q ss_pred eC-cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 119 DK-GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 119 ~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+. .++.|+.......++...++++++++|||||.|++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 135 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp ECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 74 57887744444567899999999999999999998664
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.71 E-value=6.4e-17 Score=119.87 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=99.0
Q ss_pred eecCccCHHHHHHhhC----CCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEecc
Q 028547 29 WYQKYPSLAPLIKLYV----PSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDV 103 (207)
Q Consensus 29 ~~~~~~~~~~~l~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~ 103 (207)
|.+..+.+.+.+...+ .+++.+|||+|||+|..+..+++.+. ..|+|+|+|+.+++.++++....+++..+..|.
T Consensus 52 w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~ 131 (230)
T d1g8sa_ 52 WNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA 131 (230)
T ss_dssp CCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT
T ss_pred ECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEee
Confidence 5555556666665422 24445999999999999999999754 589999999999999999988778889999998
Q ss_pred ccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 104 RQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 104 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
....++....+|++++...+++. .+...++.++.+.|||||.+++...
T Consensus 132 ~~~~~~~~~~~~v~~i~~~~~~~-------~~~~~~l~~~~r~LKpgG~~~i~~k 179 (230)
T d1g8sa_ 132 NKPQEYANIVEKVDVIYEDVAQP-------NQAEILIKNAKWFLKKGGYGMIAIK 179 (230)
T ss_dssp TCGGGGTTTCCCEEEEEECCCST-------THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCcccccccceeEEeeccccch-------HHHHHHHHHHHHhcccCceEEEEee
Confidence 88765666777877766666665 7889999999999999999988763
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.2e-17 Score=124.25 Aligned_cols=147 Identities=16% Similarity=0.194 Sum_probs=100.1
Q ss_pred CCCChhchhhhhcccCCceeeecCc-cCHHHHHHhh---CCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHH
Q 028547 9 AYGEPWYWDNRYAHESGPFDWYQKY-PSLAPLIKLY---VPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIE 84 (207)
Q Consensus 9 ~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~ 84 (207)
.|+.+.||+..|......+...... .-....+... ....+.+|||+|||+|.++...+.....+|+++|+|+.+++
T Consensus 12 ~f~~~~Y~~~~y~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~ 91 (263)
T d2g72a1 12 RFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQ 91 (263)
T ss_dssp GCCHHHHHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHH
T ss_pred hcCHHHHHHHHhCcCcccchhhhhhhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHH
Confidence 4677899999998664433221111 0011122221 12233599999999998876666555568999999999999
Q ss_pred HHHHHccCCC-C-------------------------------ceEEEecccccc-----ccCCCCeeEEEeCcchhhhc
Q 028547 85 AMMKKYSNRP-Q-------------------------------LKYIKMDVRQMD-----EFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 85 ~~~~~~~~~~-~-------------------------------~~~~~~d~~~~~-----~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+++++.... . .....+|+.+.. +...++||+|++..+++++
T Consensus 92 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i- 170 (263)
T d2g72a1 92 ELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAV- 170 (263)
T ss_dssp HHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHH-
T ss_pred HHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHH-
Confidence 9998765321 1 123445655431 2345689999999999998
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
..+.++...++++++++|||||.|++.+.
T Consensus 171 --~~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 171 --SPDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp --CSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred --ccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 22345789999999999999999999774
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=3.4e-17 Score=125.12 Aligned_cols=106 Identities=14% Similarity=0.176 Sum_probs=83.0
Q ss_pred cEEEEcCCCchhhHHHHhc------CC-CcEEEEeCCHHHHHHHHHHccCCC---CceE--EEeccccc-----cccCCC
Q 028547 50 RILIVGCGNSAFSEGMVDD------GY-EDVVNVDISSVVIEAMMKKYSNRP---QLKY--IKMDVRQM-----DEFQTG 112 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~------~~-~~v~~~D~s~~~i~~~~~~~~~~~---~~~~--~~~d~~~~-----~~~~~~ 112 (207)
+|||+|||+|.++..+++. +. ..++++|+|+.+++.+++++.... ++.+ ...++.+. .+.+.+
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ 122 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence 7999999999988777653 12 368999999999999999876533 3333 33333221 234678
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
+||+|++..+++|+ .++..++++++++|+|||.+++.......
T Consensus 123 ~fD~I~~~~~l~~~-------~d~~~~l~~l~~~LkpgG~l~i~~~~~~~ 165 (280)
T d1jqea_ 123 KWDFIHMIQMLYYV-------KDIPATLKFFHSLLGTNAKMLIIVVSGSS 165 (280)
T ss_dssp CEEEEEEESCGGGC-------SCHHHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred ceeEEEEccceecC-------CCHHHHHHHHHhhCCCCCEEEEEEecCcc
Confidence 99999999999998 88999999999999999999998875544
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.67 E-value=1.9e-16 Score=119.26 Aligned_cols=113 Identities=12% Similarity=0.154 Sum_probs=90.8
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~ 112 (207)
..++..+.-...++|||||||+|.++..+++..+ .+++++|+ +.+++.++++.... .++.++.+|+.+.. ..
T Consensus 70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~---~~ 145 (253)
T d1tw3a2 70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---PR 145 (253)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---SS
T ss_pred HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc---cc
Confidence 3455555444546999999999999999999864 48999998 56788888776532 57999999987652 35
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+||+|++..++|++ +.++...+|++++++|+|||.+++...
T Consensus 146 ~~D~v~~~~vlh~~-----~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 146 KADAIILSFVLLNW-----PDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp CEEEEEEESCGGGS-----CHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred chhheeeccccccC-----CchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 79999999999988 556677899999999999999999764
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.67 E-value=1.7e-16 Score=115.41 Aligned_cols=111 Identities=18% Similarity=0.235 Sum_probs=87.0
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc--CCCCceEEEecccccc-ccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMD-EFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~-~~~~~~fD~v~~~~ 121 (207)
..+ .|||||||+|..+..+++..+ ..++|+|+++.++..+.++.. ...|+.++++|+..+. .++++++|.|++..
T Consensus 29 ~~P-lvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 29 DNP-IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CCC-EEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCc-eEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc
Confidence 455 899999999999999999865 599999999999999988765 3379999999998862 36789999999766
Q ss_pred chhhhcc-CCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLC-GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~-~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+..|... +....-....+++.++++|||||.|++.|
T Consensus 108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 5554300 00000013689999999999999999986
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=1e-16 Score=121.27 Aligned_cols=143 Identities=12% Similarity=0.167 Sum_probs=105.2
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS 91 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~ 91 (207)
..||.-.+.-.+.-+.-..+.+.+.+.........+.+|||+|||+|..+..++.... .+|+++|+|+.+++.|+++..
T Consensus 74 ~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~ 153 (274)
T d2b3ta1 74 REFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ 153 (274)
T ss_dssp EEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH
T ss_pred EEEeeeEEEEeccccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHH
Confidence 4566666666655555555555455444334444445999999999999999988754 599999999999999999876
Q ss_pred C--CCCceEEEeccccccccCCCCeeEEEeCcchhhh---------c---------cCCCChhhHHHHHHHHHHhcCCCc
Q 028547 92 N--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL---------L---------CGSNSRQNATQMLKEVWRVLKDKG 151 (207)
Q Consensus 92 ~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~---------~---------~~~~~~~~~~~~l~~~~~~L~pgG 151 (207)
. ..++.|++.|+.+. .+..+||+|+++.++-.- . .+.++......+++.+.++|+|||
T Consensus 154 ~~~~~~v~~~~~d~~~~--~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G 231 (274)
T d2b3ta1 154 HLAIKNIHILQSDWFSA--LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGG 231 (274)
T ss_dssp HHTCCSEEEECCSTTGG--GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEE
T ss_pred HhCcccceeeecccccc--cCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCC
Confidence 3 25799999999875 466799999999776321 0 001123467788999999999999
Q ss_pred EEEEEE
Q 028547 152 VYILVT 157 (207)
Q Consensus 152 ~~~~~~ 157 (207)
.+++..
T Consensus 232 ~l~lEi 237 (274)
T d2b3ta1 232 FLLLEH 237 (274)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 999854
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.65 E-value=4.1e-16 Score=113.94 Aligned_cols=120 Identities=15% Similarity=0.166 Sum_probs=89.4
Q ss_pred eecCccCHHHHHHh---hCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccc
Q 028547 29 WYQKYPSLAPLIKL---YVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR 104 (207)
Q Consensus 29 ~~~~~~~~~~~l~~---~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~ 104 (207)
|....+.+...+.. +..+++.+|||+|||+|..+..+++... .+|+|+|+++.+++.++++.....|+.++..|+.
T Consensus 35 w~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~ 114 (209)
T d1nt2a_ 35 WVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDAS 114 (209)
T ss_dssp CCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTT
T ss_pred eCCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeecc
Confidence 44444445544432 2234445999999999999999998633 5899999999999999998876679999999988
Q ss_pred cccccC---CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 105 QMDEFQ---TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 105 ~~~~~~---~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
... .. ...+|+|+.. +.+. .+...++++++++|||||.+++...
T Consensus 115 ~~~-~~~~~~~~vd~v~~~--~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 115 KPW-KYSGIVEKVDLIYQD--IAQK-------NQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp CGG-GTTTTCCCEEEEEEC--CCST-------THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Ccc-ccccccceEEEEEec--ccCh-------hhHHHHHHHHHHHhccCCeEEEEEE
Confidence 862 22 2345555543 3333 6788999999999999999998763
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.64 E-value=2.1e-15 Score=110.86 Aligned_cols=106 Identities=24% Similarity=0.230 Sum_probs=86.8
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeE
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDS 116 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~ 116 (207)
..+++.+..+++.+|||+|||+|+++..+++... +|+++|+++..++.++++.....|+.++.+|.....+ ..++||.
T Consensus 60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~-~~~pfD~ 137 (224)
T d1vbfa_ 60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDR 137 (224)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEE
T ss_pred HHHHHHhhhcccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHHhcccccccccCchhhcch-hhhhHHH
Confidence 4455555555556999999999999999999865 9999999999999999988877899999999887632 4678999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|++...+.++ .+.+.+.|+|||.+++..
T Consensus 138 Iiv~~a~~~i-------------p~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 138 VVVWATAPTL-------------LCKPYEQLKEGGIMILPI 165 (224)
T ss_dssp EEESSBBSSC-------------CHHHHHTEEEEEEEEEEE
T ss_pred HHhhcchhhh-------------hHHHHHhcCCCCEEEEEE
Confidence 9998777765 234568899999998854
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=1.2e-15 Score=111.87 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=86.6
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQT 111 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~ 111 (207)
+..+++.+..+++.+|||+|||+|..+..+++. +. ..|+++|+++++++.+++++.. ..++.++++|..+.. ...
T Consensus 64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~-~~~ 142 (213)
T d1dl5a1 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV-PEF 142 (213)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGG
T ss_pred hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc-ccc
Confidence 455666665555569999999999999999875 32 4899999999999999998763 368899999988863 456
Q ss_pred CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
++||+|++...++++ .+.+.+.|+|||.+++..
T Consensus 143 ~~fD~I~~~~~~~~~-------------p~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 143 SPYDVIFVTVGVDEV-------------PETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CCEEEEEECSBBSCC-------------CHHHHHHEEEEEEEEEEB
T ss_pred cchhhhhhhccHHHh-------------HHHHHHhcCCCcEEEEEE
Confidence 789999999888765 134678899999998754
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.61 E-value=3.8e-15 Score=108.21 Aligned_cols=111 Identities=21% Similarity=0.270 Sum_probs=85.9
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc--CCCCceEEEecccccc-ccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMD-EFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~-~~~~~~fD~v~~~~ 121 (207)
..+ .|||||||+|.++..+++..+ ..++|+|+++.++..+.++.. +..|+.++.+|+.++. .++..++|.|++..
T Consensus 31 ~~p-lvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 31 DNP-IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCC-EEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCC-eEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence 455 899999999999999999865 589999999999999888765 3379999999998862 36788999998765
Q ss_pred chhhhcc-CCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLC-GSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~-~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+-.|... +....--...+++.++++|+|||.+++.|
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 4433200 00000123789999999999999999977
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.59 E-value=5.6e-15 Score=111.24 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=90.1
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccccCCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~ 112 (207)
..+++.+.-...++|||||||+|.++..+++..+ .+++++|+ +++++.+++++.. ..++.+...|..+. .+ .
T Consensus 71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~--~p-~ 146 (256)
T d1qzza2 71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP--LP-V 146 (256)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC--CS-C
T ss_pred HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc--cc-c
Confidence 3445444334445999999999999999999864 48999997 7788888877652 25788999988764 33 4
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.||+|++..++|++ +.++...+|+++++.|+|||.+++...
T Consensus 147 ~~D~v~~~~vLh~~-----~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 147 TADVVLLSFVLLNW-----SDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp CEEEEEEESCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cchhhhcccccccc-----CcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 59999999999987 566778899999999999999998764
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=5.1e-15 Score=114.54 Aligned_cols=104 Identities=20% Similarity=0.214 Sum_probs=82.6
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
++++|||||||+|.++..+++.|..+|+++|.++.+....+..... ..++.++++|+.++ +.+.++||+|++..+.+
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l-~~~~~~~D~Ivse~~~~ 113 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV-HLPVEKVDVIISEWMGY 113 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSCSCEEEEEECCCBT
T ss_pred CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHh-cCccccceEEEEeeeee
Confidence 3459999999999999999999888999999999876554443322 26799999999998 46788999999875555
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
.+ ..+.....++....++|+|||.++-
T Consensus 114 ~~----~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 114 FL----LFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TB----TTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ec----ccccccHHHHHHHHhcCCCCcEEec
Confidence 43 2335677888888899999999874
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.59 E-value=3.2e-15 Score=112.29 Aligned_cols=110 Identities=20% Similarity=0.250 Sum_probs=89.6
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccC-----CCCceEEEeccccccc
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSN-----RPQLKYIKMDVRQMDE 108 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~-----~~~~~~~~~d~~~~~~ 108 (207)
...++..+..+++.+|||+|||+|.++..++.. +. .+|+++|+++++++.|++++.. ..++.+.+.|+.+. +
T Consensus 85 ~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~-~ 163 (264)
T d1i9ga_ 85 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-E 163 (264)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-C
T ss_pred HHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc-c
Confidence 445555555566679999999999999999986 44 4999999999999999987652 26899999999987 5
Q ss_pred cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 109 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+++++||.|++. + .++..+++++.++|||||.+++...
T Consensus 164 ~~~~~fDaV~ld-----l-------p~P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 164 LPDGSVDRAVLD-----M-------LAPWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp CCTTCEEEEEEE-----S-------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred ccCCCcceEEEe-----c-------CCHHHHHHHHHhccCCCCEEEEEeC
Confidence 788999999853 3 4556789999999999999987653
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.57 E-value=4.5e-15 Score=103.10 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=84.6
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+++|||+|||+|.++.+++.+|.++|+++|.++.+++.+++++... .++.++++|+.+......++||+|++.+++.
T Consensus 15 g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy~ 94 (152)
T d2esra1 15 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYA 94 (152)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSSH
T ss_pred CCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhhc
Confidence 3499999999999999999998889999999999999999987743 4589999999886455678999999987655
Q ss_pred hhccCCCChhhHHHHHHHHH--HhcCCCcEEEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVW--RVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~--~~L~pgG~~~~~~ 157 (207)
. ......++.+. ++|+|+|.+++..
T Consensus 95 ~--------~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 95 K--------ETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp H--------HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred c--------chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 3 45566677664 5699999998865
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=3.6e-15 Score=116.27 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=82.0
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+++|||+|||+|.++..+++.|..+|+++|.++ ++..++++... ..++.++++++.+. +++..+||+|++..+.+
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l-~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSSSCEEEEEECCCBT
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhc-cCcccceeEEEEEecce
Confidence 349999999999999999999888999999997 45566554432 25789999999998 57889999999876655
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
.+ ..+.....++..+.++|||||.++
T Consensus 117 ~~----~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FL----LYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TB----STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ee----ccchhHHHHHHHHHhccCCCeEEE
Confidence 44 234677888999999999999986
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.57 E-value=7.4e-15 Score=109.62 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=83.5
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCC
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQT 111 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~ 111 (207)
..++..+.-+++.+|||+|||+|.++..+++. +. .+|+++|.++++++.|++++... .++.+...|+.+. +++
T Consensus 75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~--~~~ 152 (250)
T d1yb2a1 75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF--ISD 152 (250)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC--CCS
T ss_pred HHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc--ccc
Confidence 34444444455569999999999999999875 33 59999999999999999987642 6899999999886 467
Q ss_pred CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
..||.|++.. .++..+++++.++|||||.+++...
T Consensus 153 ~~fD~V~ld~------------p~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 153 QMYDAVIADI------------PDPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp CCEEEEEECC------------SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred ceeeeeeecC------------CchHHHHHHHHHhcCCCceEEEEeC
Confidence 8999999642 2345679999999999999987653
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=6e-15 Score=114.40 Aligned_cols=102 Identities=19% Similarity=0.184 Sum_probs=80.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc-C--CCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS-N--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~-~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
+++|||+|||+|.++..+++.|..+|+++|.++.+. .+++... + ..++.++++|+.+. +.+.++||+|++..+.+
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~-~a~~~~~~n~~~~~v~~~~~~~~~~-~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISD-YAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHH-HHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECCCBB
T ss_pred cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHh-hhhhHHHHhCCccccceEeccHHHc-ccccceeEEEeeeeeee
Confidence 349999999999999999999877899999998654 4433322 2 25699999999998 57788999999875554
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
.+ ..+.....++..+.++|+|||.++-
T Consensus 112 ~l----~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CL----FYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TB----TBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ee----ccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 43 2335688999999999999999873
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.5e-14 Score=105.36 Aligned_cols=108 Identities=16% Similarity=0.201 Sum_probs=84.4
Q ss_pred HHHHHHhhC--CCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccC-------CCCceEEEeccc
Q 028547 36 LAPLIKLYV--PSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSN-------RPQLKYIKMDVR 104 (207)
Q Consensus 36 ~~~~l~~~~--~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~-------~~~~~~~~~d~~ 104 (207)
...+++.+. .+++.+|||+|||+|+.+..+++. +. .+|+++|+++++++.+++++.. ..++.+..+|+.
T Consensus 63 ~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~ 142 (224)
T d1i1na_ 63 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR 142 (224)
T ss_dssp HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecc
Confidence 345555442 234459999999999999888875 33 4999999999999999887652 247889999998
Q ss_pred cccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 105 QMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 105 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
... ....+||+|++...++++ .+.+.+.|||||.+++..
T Consensus 143 ~~~-~~~~~fD~I~~~~~~~~i-------------p~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 143 MGY-AEEAPYDAIHVGAAAPVV-------------PQALIDQLKPGGRLILPV 181 (224)
T ss_dssp GCC-GGGCCEEEEEECSBBSSC-------------CHHHHHTEEEEEEEEEEE
T ss_pred ccc-chhhhhhhhhhhcchhhc-------------CHHHHhhcCCCcEEEEEE
Confidence 873 467899999998887765 235788999999999865
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.55 E-value=3.1e-14 Score=104.86 Aligned_cols=121 Identities=15% Similarity=0.215 Sum_probs=93.1
Q ss_pred eecCccCHHHHHHhh----CCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEec
Q 028547 29 WYQKYPSLAPLIKLY----VPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD 102 (207)
Q Consensus 29 ~~~~~~~~~~~l~~~----~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d 102 (207)
|-+..+.+...+..- ..+++.+|||+|||+|..+..+++. |. ..|+++|+++.+++.++++.....++..+..|
T Consensus 51 w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d 130 (227)
T d1g8aa_ 51 WNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGD 130 (227)
T ss_dssp CCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECC
T ss_pred ECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEE
Confidence 544444566555432 2344459999999999999999986 43 49999999999999999998877788888888
Q ss_pred cccccc--cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 103 VRQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 103 ~~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
...... .....+|+|++. +.+. .+...+++++.+.|+|||.++++..
T Consensus 131 ~~~~~~~~~~~~~vD~i~~d--~~~~-------~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 131 ATKPEEYRALVPKVDVIFED--VAQP-------TQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp TTCGGGGTTTCCCEEEEEEC--CCST-------THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCcccccccccceEEEEEE--cccc-------chHHHHHHHHHHhcccCCeEEEEEE
Confidence 876532 234678888864 3332 6788899999999999999998764
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.53 E-value=8.3e-14 Score=101.62 Aligned_cols=138 Identities=14% Similarity=0.062 Sum_probs=100.8
Q ss_pred CCCCCCChhchhhhhcccCCcee---eecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHH
Q 028547 6 TTQAYGEPWYWDNRYAHESGPFD---WYQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVV 82 (207)
Q Consensus 6 ~~~~~~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~ 82 (207)
+...|-...|....|....-.+. .......+..+++.+..+++.+|||||||+|+.+..+++.-..+|+++|.++..
T Consensus 34 pRe~Fvp~~~~~~AY~D~~l~i~~g~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l 113 (215)
T d1jg1a_ 34 PRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPEL 113 (215)
T ss_dssp CGGGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHH
T ss_pred CchhcCCHHHhhcccccCCcccchhhhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHH
Confidence 44566666776666665422221 112222345666666556666999999999999999987622489999999999
Q ss_pred HHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 83 IEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 83 i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
++.+++++.. ..|+.++++|..+.. ....+||.|++...+..+ -..+.+.|+|||.+++..
T Consensus 114 ~~~a~~~l~~~g~~nv~~~~gd~~~g~-~~~~pfD~Iiv~~a~~~i-------------p~~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 114 VEFAKRNLERAGVKNVHVILGDGSKGF-PPKAPYDVIIVTAGAPKI-------------PEPLIEQLKIGGKLIIPV 176 (215)
T ss_dssp HHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEECSBBSSC-------------CHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCceeEEEECccccCC-cccCcceeEEeecccccC-------------CHHHHHhcCCCCEEEEEE
Confidence 9999998763 379999999999864 357899999998777755 123567899999998755
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.52 E-value=1.7e-14 Score=112.00 Aligned_cols=133 Identities=15% Similarity=0.111 Sum_probs=99.0
Q ss_pred ecCccCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccc
Q 028547 30 YQKYPSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQM 106 (207)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~ 106 (207)
+...+.....+..+..+.. +|||+|||+|.++..++..|..+|+++|+++.+++.+++++... .+++++++|+.+.
T Consensus 129 flDqr~~r~~~~~~~~~g~-~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~ 207 (324)
T d2as0a2 129 FLDQRENRLALEKWVQPGD-RVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE 207 (324)
T ss_dssp CSTTHHHHHHHGGGCCTTC-EEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred ccchhhHHHHHHhhcCCCC-eeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhh
Confidence 3333345556666655555 99999999999999999988779999999999999999987632 4688999998874
Q ss_pred c---ccCCCCeeEEEeCcchhhhccCCC----ChhhHHHHHHHHHHhcCCCcEEEEEEeCCccccc
Q 028547 107 D---EFQTGSFDSVVDKGTLDSLLCGSN----SRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRL 165 (207)
Q Consensus 107 ~---~~~~~~fD~v~~~~~l~~~~~~~~----~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~ 165 (207)
. +....+||+|++..+.... ... .......++..+.++|+|||.+++.+++......
T Consensus 208 ~~~~~~~~~~fD~Vi~DpP~~~~--~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~ 271 (324)
T d2as0a2 208 MEKLQKKGEKFDIVVLDPPAFVQ--HEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQ 271 (324)
T ss_dssp HHHHHHTTCCEEEEEECCCCSCS--SGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHH
T ss_pred hHHHHhccCCCCchhcCCccccC--CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHH
Confidence 2 2356789999987664321 000 0135667888899999999999999877654433
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.6e-14 Score=112.43 Aligned_cols=113 Identities=11% Similarity=0.077 Sum_probs=87.7
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHcc-----------CCCCceEEEecc
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYS-----------NRPQLKYIKMDV 103 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~-----------~~~~~~~~~~d~ 103 (207)
+.++++....++..+|||+|||+|.++..+++. ++.+++|+|+++.+++.|+++.. ...++.|+++|+
T Consensus 140 ~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~ 219 (328)
T d1nw3a_ 140 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 219 (328)
T ss_dssp HHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred HHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence 456666665455559999999999999998875 44589999999999999876533 225799999999
Q ss_pred ccccccCCCC--eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 104 RQMDEFQTGS--FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 104 ~~~~~~~~~~--fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+. ++.+.. .|+|+++...+ . .+....+.++.+.|||||.+++..
T Consensus 220 ~~~-~~~~~~~~advi~~~~~~f-~-------~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 220 LSE-EWRERIANTSVIFVNNFAF-G-------PEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp TSH-HHHHHHHHCSEEEECCTTT-C-------HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccc-ccccccCcceEEEEcceec-c-------hHHHHHHHHHHHhCCCCcEEEEec
Confidence 987 444433 47888766544 3 688899999999999999998754
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.47 E-value=1.6e-13 Score=98.54 Aligned_cols=74 Identities=22% Similarity=0.343 Sum_probs=63.1
Q ss_pred CCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 45 PSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 45 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.-.+++|||+|||+|.++..++..|..+|+++|+++.+++.++++. .++.+++.|+.+. +++||+|+++.++.
T Consensus 46 dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~---~~~~~~~~D~~~l----~~~fD~Vi~NPPfg 118 (197)
T d1ne2a_ 46 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC---GGVNFMVADVSEI----SGKYDTWIMNPPFG 118 (197)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC---TTSEEEECCGGGC----CCCEEEEEECCCC-
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc---ccccEEEEehhhc----CCcceEEEeCcccc
Confidence 3345699999999999999999988778999999999999999987 4689999999876 36799999998875
Q ss_pred h
Q 028547 125 S 125 (207)
Q Consensus 125 ~ 125 (207)
.
T Consensus 119 ~ 119 (197)
T d1ne2a_ 119 S 119 (197)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.46 E-value=9.8e-14 Score=104.56 Aligned_cols=109 Identities=13% Similarity=0.187 Sum_probs=85.2
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcC-C-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDG-Y-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQ 110 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~ 110 (207)
...++..+..+++.+|||+|||+|.++..+++.. . .+|+++|+++++++.|++++... .++.+...|+... +.
T Consensus 92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~--~~ 169 (266)
T d1o54a_ 92 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG--FD 169 (266)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--CS
T ss_pred HHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc--cc
Confidence 3445555555666799999999999999998863 3 49999999999999999987643 4677777776554 46
Q ss_pred CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
...||.|+.. + .++..+++++.++|||||.+++...
T Consensus 170 ~~~~D~V~~d-----~-------p~p~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 170 EKDVDALFLD-----V-------PDPWNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp CCSEEEEEEC-----C-------SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred ccceeeeEec-----C-------CCHHHHHHHHHhhcCCCCEEEEEeC
Confidence 6789999853 2 4556789999999999999987653
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=3.1e-13 Score=96.48 Aligned_cols=101 Identities=8% Similarity=0.072 Sum_probs=84.0
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+|||++||+|.++.+++.+|..+|+.+|.++.+++.+++++.. ..+..+++.|+.+.......+||+|++.+++..
T Consensus 45 ~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~- 123 (183)
T d2fpoa1 45 AQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRR- 123 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSST-
T ss_pred hhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcccc-
Confidence 39999999999999999999988999999999999999998763 257899999988864456789999999877553
Q ss_pred ccCCCChhhHHHHHHHHHH--hcCCCcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWR--VLKDKGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~--~L~pgG~~~~~~ 157 (207)
......+..+.+ +|+++|++++..
T Consensus 124 -------~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 124 -------GLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp -------TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred -------chHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 345666666654 699999998865
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.44 E-value=1.5e-13 Score=103.29 Aligned_cols=107 Identities=9% Similarity=0.111 Sum_probs=84.6
Q ss_pred HHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCCCe
Q 028547 38 PLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 38 ~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~f 114 (207)
..+.....+.. +|||+|||+|.++..+++.+.++|+++|+++.+++.+++++... .++.++++|+.++. ....|
T Consensus 99 ~ri~~~~~~g~-~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~--~~~~~ 175 (260)
T d2frna1 99 VRMAKVAKPDE-LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP--GENIA 175 (260)
T ss_dssp HHHHHHCCTTC-EEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--CCSCE
T ss_pred HHHHhhcCCcc-EEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc--cCCCC
Confidence 33444445554 99999999999999999987669999999999999999987632 45899999999873 56789
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|.|+++.+... ..+++.+.+.|++||++.+..+
T Consensus 176 D~Ii~~~p~~~-----------~~~l~~a~~~l~~gG~lh~~~~ 208 (260)
T d2frna1 176 DRILMGYVVRT-----------HEFIPKALSIAKDGAIIHYHNT 208 (260)
T ss_dssp EEEEECCCSSG-----------GGGHHHHHHHEEEEEEEEEEEE
T ss_pred CEEEECCCCch-----------HHHHHHHHhhcCCCCEEEEEec
Confidence 99998754332 3456778899999999876554
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=9e-14 Score=107.55 Aligned_cols=115 Identities=16% Similarity=0.155 Sum_probs=88.5
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccc---cccCCCCeeEEEeCcc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQM---DEFQTGSFDSVVDKGT 122 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~---~~~~~~~fD~v~~~~~ 122 (207)
+++|||++||+|.++..++.. .++|+++|+|+.+++.+++++... .++++++.|+.+. .....++||+|++..+
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP 224 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 224 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence 349999999999999998865 459999999999999999987632 5789999998874 1234678999998865
Q ss_pred hhhhccCCC----ChhhHHHHHHHHHHhcCCCcEEEEEEeCCccccc
Q 028547 123 LDSLLCGSN----SRQNATQMLKEVWRVLKDKGVYILVTYGAPIYRL 165 (207)
Q Consensus 123 l~~~~~~~~----~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~ 165 (207)
.... +.. .......++..+.++|+|||.+++.+++......
T Consensus 225 ~~~~--~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~ 269 (318)
T d1wxxa2 225 AFAK--GKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEP 269 (318)
T ss_dssp CSCC--STTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHH
T ss_pred cccc--chHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHH
Confidence 4321 111 1235667888999999999999998877654433
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.43 E-value=2.3e-13 Score=102.48 Aligned_cols=142 Identities=13% Similarity=0.086 Sum_probs=96.6
Q ss_pred hhchhhhhcccCCceeeecCccCHHHHHHhhCC-CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc
Q 028547 13 PWYWDNRYAHESGPFDWYQKYPSLAPLIKLYVP-SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (207)
Q Consensus 13 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~ 91 (207)
++||...+.-....+.-.++.+.+.+.+..... ....+|+|+|||+|..+..+++....+|+++|+|+.+++.|++|..
T Consensus 75 ~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~ 154 (271)
T d1nv8a_ 75 KEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAE 154 (271)
T ss_dssp EEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHH
T ss_pred EEEeeeEEEEecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHH
Confidence 456666666665555555555444443333222 2334899999999999999887655699999999999999999876
Q ss_pred CC---CCceEEEeccccccccCCCCeeEEEeCcchhh----------------hccCCCChhhHHHHHHHHHHhcCCCcE
Q 028547 92 NR---PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS----------------LLCGSNSRQNATQMLKEVWRVLKDKGV 152 (207)
Q Consensus 92 ~~---~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~----------------~~~~~~~~~~~~~~l~~~~~~L~pgG~ 152 (207)
.. .++.+...|+.+..+...++||+|+++.++-. +..+.++......+ +.++|+|||.
T Consensus 155 ~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~ 231 (271)
T d1nv8a_ 155 RHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKI 231 (271)
T ss_dssp HTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCE
T ss_pred HcCCCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCE
Confidence 32 35677788888764444579999999977522 11222233344444 3578999999
Q ss_pred EEEEE
Q 028547 153 YILVT 157 (207)
Q Consensus 153 ~~~~~ 157 (207)
+++..
T Consensus 232 l~~Ei 236 (271)
T d1nv8a_ 232 VLMEI 236 (271)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 88865
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=4e-13 Score=103.73 Aligned_cols=110 Identities=17% Similarity=0.272 Sum_probs=81.6
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CC-CcEEEEeCCHHHHHHHHHHccC-------------CCCceEEE
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GY-EDVVNVDISSVVIEAMMKKYSN-------------RPQLKYIK 100 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~~D~s~~~i~~~~~~~~~-------------~~~~~~~~ 100 (207)
...++..+.-+++.+|||+|||+|.++..++.. +. .+|+++|+++++++.|++++.. ..|+.+..
T Consensus 87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 445555555566669999999999999999985 33 4899999999999999987641 15789999
Q ss_pred ecccccc-ccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 101 MDVRQMD-EFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 101 ~d~~~~~-~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|+.+.. ......||.|+... .++..++.++.++|||||.+++..
T Consensus 167 ~di~~~~~~~~~~~fD~V~LD~------------p~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVALDM------------LNPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp SCTTCCC-------EEEEEECS------------SSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred cchhhcccccCCCCcceEeecC------------cCHHHHHHHHHHhccCCCEEEEEe
Confidence 9988752 23567899999632 223347889999999999988755
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.41 E-value=4.5e-13 Score=103.36 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=90.1
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC----CCCceEEEeccccccc---cCCCCeeE
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN----RPQLKYIKMDVRQMDE---FQTGSFDS 116 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~----~~~~~~~~~d~~~~~~---~~~~~fD~ 116 (207)
..+. ++|||++||+|.++..++..|..+|+++|+++.+++.+++++.. ..+++|++.|+.+... ...++||+
T Consensus 142 ~~~g-~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAG-KTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBT-CEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCC-CceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 3344 49999999999999999888877999999999999999998752 2478999999987521 24568999
Q ss_pred EEeCcchhhhc--cCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 117 VVDKGTLDSLL--CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 117 v~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
|++..+-..-. .......+...+++.+.++|+|||.+++.+++..-.
T Consensus 221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~ 269 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT 269 (317)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC
T ss_pred EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCC
Confidence 99876532110 000122467789999999999999999988765543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.41 E-value=2.4e-13 Score=95.98 Aligned_cols=108 Identities=15% Similarity=0.247 Sum_probs=76.6
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccc---cccCCCCe
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQM---DEFQTGSF 114 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~---~~~~~~~f 114 (207)
++.....+.. +|||+|||+|.++..++..|. +++++|.++.+++.+++++... -..++...+.... .....++|
T Consensus 34 ~l~~~~~~g~-~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~f 111 (171)
T d1ws6a1 34 YLRLRYPRRG-RFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERF 111 (171)
T ss_dssp HHHHHCTTCC-EEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCE
T ss_pred HhhccccCCC-eEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCcc
Confidence 4444445565 999999999999999999987 8999999999999999987632 2334555554432 12356789
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHH--HHhcCCCcEEEEEE
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEV--WRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~--~~~L~pgG~~~~~~ 157 (207)
|+|+++.++.. +....+..+ ..+|+|||++++..
T Consensus 112 D~If~DPPY~~---------~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 112 TVAFMAPPYAM---------DLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp EEEEECCCTTS---------CTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred ceeEEcccccc---------CHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 99999877552 112223333 35799999988765
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.37 E-value=2.9e-12 Score=93.97 Aligned_cols=108 Identities=16% Similarity=0.163 Sum_probs=82.0
Q ss_pred HHHHHHhh--CCCCCCcEEEEcCCCchhhHHHHhc----CC---CcEEEEeCCHHHHHHHHHHccC-------CCCceEE
Q 028547 36 LAPLIKLY--VPSHHQRILIVGCGNSAFSEGMVDD----GY---EDVVNVDISSVVIEAMMKKYSN-------RPQLKYI 99 (207)
Q Consensus 36 ~~~~l~~~--~~~~~~~vLdiG~G~G~~~~~l~~~----~~---~~v~~~D~s~~~i~~~~~~~~~-------~~~~~~~ 99 (207)
...+++.+ .-+++.+|||+|||+|+.+..+++. |. .+|+++|+++++++.+++++.. ..|+.+.
T Consensus 67 ~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~ 146 (223)
T d1r18a_ 67 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV 146 (223)
T ss_dssp HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEE
Confidence 44555554 1233349999999999999888774 21 3799999999999999887531 2589999
Q ss_pred EeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 100 KMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 100 ~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+|..+.. ...++||.|++...+..+ -+.+.+.|+|||.+++..
T Consensus 147 ~~d~~~~~-~~~~~fD~Iiv~~a~~~~-------------p~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 147 EGDGRKGY-PPNAPYNAIHVGAAAPDT-------------PTELINQLASGGRLIVPV 190 (223)
T ss_dssp ESCGGGCC-GGGCSEEEEEECSCBSSC-------------CHHHHHTEEEEEEEEEEE
T ss_pred eccccccc-ccccceeeEEEEeechhc-------------hHHHHHhcCCCcEEEEEE
Confidence 99999874 356799999998877755 134678999999998755
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.37 E-value=1.9e-12 Score=102.50 Aligned_cols=115 Identities=10% Similarity=0.090 Sum_probs=81.9
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccC-----------CCCceE-EEe
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSN-----------RPQLKY-IKM 101 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~-----------~~~~~~-~~~ 101 (207)
.+.++++....+++.+|||||||+|..+..++.. ++++++|+|+++.+++.|+++... .....+ ...
T Consensus 204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 4567777765555569999999999999999876 456899999999999999886531 112222 223
Q ss_pred ccccccc--cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 102 DVRQMDE--FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 102 d~~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+...... ..-..+|+|+++..++ . .+....+.++.+.|||||.++...
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn~~f-~-------~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNNFLF-D-------EDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTC-C-------HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred chhhccccccccccceEEEEecccC-c-------hHHHHHHHHHHHhcCCCcEEEEec
Confidence 3333211 1223578898775433 3 788999999999999999988753
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.37 E-value=2.5e-12 Score=92.10 Aligned_cols=129 Identities=15% Similarity=0.250 Sum_probs=98.0
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccc----cc
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQM----DE 108 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~----~~ 108 (207)
.+.+++..+.+.++..+||++||+|..+..+++... .+++|+|.++++++.+++++... .++.+++.++.+. ..
T Consensus 11 ll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~ 90 (192)
T d1m6ya2 11 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 90 (192)
T ss_dssp THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence 355677777666667999999999999999988632 59999999999999999998753 5799999988774 23
Q ss_pred cCCCCeeEEEeCcchhh--hccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 028547 109 FQTGSFDSVVDKGTLDS--LLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPIY 163 (207)
Q Consensus 109 ~~~~~fD~v~~~~~l~~--~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~ 163 (207)
+..++||.|+....+.. +-............+..+.++|+|||.+.+++|.....
T Consensus 91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Ed 147 (192)
T d1m6ya2 91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLED 147 (192)
T ss_dssp TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHH
T ss_pred cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHH
Confidence 45689999986533311 10111233578889999999999999999998766543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.36 E-value=1.4e-12 Score=92.86 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=82.9
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC---CCCceEEEeccccccc---cCCCCeeEEEeCc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN---RPQLKYIKMDVRQMDE---FQTGSFDSVVDKG 121 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~---~~~~~~~~~d~~~~~~---~~~~~fD~v~~~~ 121 (207)
+.+|||++||+|.++.+++.+|..+|+.+|.++.+++.+++++.. ..++.+++.|+.+... ....+||+|++.+
T Consensus 42 ~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDP 121 (182)
T d2fhpa1 42 GGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDP 121 (182)
T ss_dssp SCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEech
Confidence 359999999999999999999988999999999999999998752 2478899999987522 1456899999998
Q ss_pred chhhhccCCCChhhHHHHHHHHHH--hcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWR--VLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~--~L~pgG~~~~~~ 157 (207)
++.. ......++.+.+ +|+++|++++..
T Consensus 122 PY~~--------~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 122 PYAK--------QEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp CGGG--------CCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhhh--------hHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 7653 455667777754 699999888755
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.35 E-value=4.9e-12 Score=91.44 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=64.0
Q ss_pred CCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+++|||+|||+|.++..++..|..+|+++|+++.+++.+++++... .+..++..|+.++ .++||+|+++.++..
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~----~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF----NSRVDIVIMNPPFGS 121 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC----CCCCSEEEECCCCSS
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh----CCcCcEEEEcCcccc
Confidence 44599999999999999999888779999999999999999987743 4678888888775 357999999988754
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.35 E-value=2.5e-12 Score=98.19 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=85.6
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc--CC--CCceEEEeccccccc---cCCCCeeEEEeC
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NR--PQLKYIKMDVRQMDE---FQTGSFDSVVDK 120 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~--~~--~~~~~~~~d~~~~~~---~~~~~fD~v~~~ 120 (207)
+++|||++||+|.++..++..|. +|++||.|+.+++.+++++. .. .+++|++.|+.+... .....||+|++.
T Consensus 133 ~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilD 211 (309)
T d2igta1 133 PLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 211 (309)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEEC
Confidence 34999999999999999999887 89999999999999999876 22 368999999988621 245789999987
Q ss_pred cchhhhccCCCC-----hhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 121 GTLDSLLCGSNS-----RQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 121 ~~l~~~~~~~~~-----~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.+-... +... ..+...+++.+.++|+|||.+++.+.+..
T Consensus 212 PP~f~~--~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~ 255 (309)
T d2igta1 212 PPKFGR--GTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI 255 (309)
T ss_dssp CCSEEE--CTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred CCcccc--cccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 663321 1111 24567777888999999998777775444
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.31 E-value=3.9e-12 Score=91.39 Aligned_cols=102 Identities=14% Similarity=0.204 Sum_probs=74.8
Q ss_pred CcEEEEcCCCchh----hHHHHhc----CC-CcEEEEeCCHHHHHHHHHHcc------------------CC--------
Q 028547 49 QRILIVGCGNSAF----SEGMVDD----GY-EDVVNVDISSVVIEAMMKKYS------------------NR-------- 93 (207)
Q Consensus 49 ~~vLdiG~G~G~~----~~~l~~~----~~-~~v~~~D~s~~~i~~~~~~~~------------------~~-------- 93 (207)
.+|+++|||+|.- +..+.+. +. -+++|.|+++.+++.|++-.- ..
T Consensus 26 lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~~ 105 (193)
T d1af7a2 26 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLV 105 (193)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEE
T ss_pred eEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcccee
Confidence 4999999999963 3333332 11 279999999999999874211 00
Q ss_pred -------CCceEEEeccccccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 94 -------PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 94 -------~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
..+.+...+.....+.+.+.||+|+|.+++.++ +.+....+++++++.|+|||.|++
T Consensus 106 ~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf-----~~~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 106 RVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-----DKTTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp EECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-----CHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc-----CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 123455555555433456889999999999998 667889999999999999998876
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.18 E-value=1.9e-11 Score=93.77 Aligned_cols=114 Identities=23% Similarity=0.252 Sum_probs=85.7
Q ss_pred hCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHcc-------CCCCceEEEeccccccccCCCCe
Q 028547 43 YVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS-------NRPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 43 ~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~f 114 (207)
..++.+++||.||+|.|..+..+++.. ..+++++|+++..++.+++.+. ..++++++.+|+.+......++|
T Consensus 73 ~~~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~y 152 (312)
T d1uira_ 73 LTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERY 152 (312)
T ss_dssp HHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCE
T ss_pred hhCCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcc
Confidence 335555699999999999999998874 3599999999999999998763 23689999999999744456789
Q ss_pred eEEEeCcchhhhccC-CCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDKGTLDSLLCG-SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~~~l~~~~~~-~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+|++... +..... ....-....+++.+.+.|+|||+++...
T Consensus 153 DvIi~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 153 DVVIIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEEEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred cEEEEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 99996531 111000 0011245789999999999999998854
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.18 E-value=1.7e-10 Score=85.51 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=79.9
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
....+|||||||+|.++..+++..+ .+++.+|. +..++ ......+++++.+|+.+. .+ ..|++++..++|
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~----~~~~~~ri~~~~gd~~~~--~p--~~D~~~l~~vLh 150 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE----NAPPLSGIEHVGGDMFAS--VP--QGDAMILKAVCH 150 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT----TCCCCTTEEEEECCTTTC--CC--CEEEEEEESSGG
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh----ccCCCCCeEEecCCcccc--cc--cceEEEEehhhh
Confidence 3335999999999999999999865 48899997 33332 222336899999999764 33 459999999999
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.+ +.++...+|+++++.|+|||.+++...
T Consensus 151 ~~-----~de~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 151 NW-----SDEKCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hC-----CHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 87 778899999999999999999999875
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=99.16 E-value=3.4e-10 Score=83.35 Aligned_cols=87 Identities=14% Similarity=0.261 Sum_probs=69.1
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCee
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
+..+++.....++.+|||||||+|.++..+++.+. +++++|+++.+++.+++++...+++.++++|+.+.. ++.....
T Consensus 10 ~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~-~~~~~~~ 87 (235)
T d1qama_ 10 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK-FPKNQSY 87 (235)
T ss_dssp HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC-CCSSCCC
T ss_pred HHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcc-ccccccc
Confidence 34555554444455999999999999999999865 999999999999999999887789999999999983 4444445
Q ss_pred EEEeCcchh
Q 028547 116 SVVDKGTLD 124 (207)
Q Consensus 116 ~v~~~~~l~ 124 (207)
.|+++-+++
T Consensus 88 ~vv~NLPYn 96 (235)
T d1qama_ 88 KIFGNIPYN 96 (235)
T ss_dssp EEEEECCGG
T ss_pred eeeeeehhh
Confidence 677765554
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.15 E-value=9.6e-11 Score=83.27 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=80.4
Q ss_pred CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----CCceEEEeccccccc--cCCCCeeEEEeCcc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVRQMDE--FQTGSFDSVVDKGT 122 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d~~~~~~--~~~~~fD~v~~~~~ 122 (207)
.+|||+.||||.++.+.+.+|..+++.+|.+..+++..++++... ....+...|+.+... ....+||+|++.++
T Consensus 45 ~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDPP 124 (183)
T d2ifta1 45 SECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPP 124 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCC
T ss_pred ceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEechh
Confidence 399999999999999999999999999999999999999886532 245666677665421 23557999999988
Q ss_pred hhhhccCCCChhhHHHHHHHHHH--hcCCCcEEEEEEe
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWR--VLKDKGVYILVTY 158 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~--~L~pgG~~~~~~~ 158 (207)
+.. ......++.+.+ +|+++|++++...
T Consensus 125 Y~~--------~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 125 FHF--------NLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp SSS--------CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred Hhh--------hhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 763 456677777764 7999999988663
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.12 E-value=7.9e-11 Score=88.92 Aligned_cols=110 Identities=18% Similarity=0.341 Sum_probs=83.9
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc------------CCCCceEEEeccccccccCC
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS------------NRPQLKYIKMDVRQMDEFQT 111 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~------------~~~~~~~~~~d~~~~~~~~~ 111 (207)
..+++++||.+|+|.|..+..+.+....+++.+|+++..++.+++.+. ..++++++..|+.+... ..
T Consensus 69 ~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~-~~ 147 (276)
T d1mjfa_ 69 AHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK-NN 147 (276)
T ss_dssp HSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH-HC
T ss_pred cCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh-cc
Confidence 345556999999999999999888766789999999999999998664 13678999999998742 46
Q ss_pred CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
++||+|++... +.. +....-....+++.+.+.|+|||+++...
T Consensus 148 ~~yDvIi~D~~-~~~--~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 148 RGFDVIIADST-DPV--GPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp CCEEEEEEECC-CCC-------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCEEEEeCC-CCC--CCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 78999997532 211 11122345789999999999999998755
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.3e-10 Score=84.75 Aligned_cols=102 Identities=12% Similarity=0.137 Sum_probs=81.2
Q ss_pred CCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccc-----cCCCCeeE
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDE-----FQTGSFDS 116 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~-----~~~~~fD~ 116 (207)
++++|||+|||+|.-+.++++.- .++++++|.+++..+.+++++... .+++++.+|+.+..+ ...++||+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 34599999999999999998852 259999999999999999987622 579999999877421 23578999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
|+...- .......++.+.+.|+|||++++-..
T Consensus 139 ifiD~d----------k~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 139 AVVDAD----------KENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp EEECSC----------STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEeCC----------HHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 996532 24567788899999999999998653
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=99.09 E-value=1.4e-10 Score=87.91 Aligned_cols=114 Identities=18% Similarity=0.322 Sum_probs=86.1
Q ss_pred hCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc------CCCCceEEEeccccccccCCCCee
Q 028547 43 YVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 43 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
..++.+++||-||.|.|..+.++.+... .+++++|+++.+++.+++.++ ..++++++..|+.+......+.||
T Consensus 85 ~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 164 (295)
T d1inla_ 85 FLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFD 164 (295)
T ss_dssp HHSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred hhCCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCC
Confidence 3445556999999999999999998753 689999999999999998764 237899999999997545677899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+|++...-... +....-....+++.+.+.|+|||+++...-
T Consensus 165 vIi~D~~dp~~--~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 165 VIIIDSTDPTA--GQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEEEEC------------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEcCCCCCc--CchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 99975321110 111223467899999999999999988653
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.08 E-value=1.7e-10 Score=87.91 Aligned_cols=113 Identities=19% Similarity=0.331 Sum_probs=83.8
Q ss_pred hhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccC------CCCceEEEeccccccccCCCCe
Q 028547 42 LYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSN------RPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~f 114 (207)
...++.+++||-+|.|.|..+.++.+... .+++.+|+++..++.+++.++. .++++++..|+.+......++|
T Consensus 101 l~~~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~y 180 (312)
T d2b2ca1 101 MFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEF 180 (312)
T ss_dssp HHHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCE
T ss_pred HhcCCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCC
Confidence 33455566999999999999999998653 6999999999999999998753 2689999999999744467889
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+|+.... +.. +....-....+++.+.+.|+|||+++...
T Consensus 181 DvII~D~~-dp~--~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 181 DVIITDSS-DPV--GPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp EEEEECCC----------------HHHHHHHHEEEEEEEEEEC
T ss_pred CEEEEcCC-CCC--CcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 99997633 211 12233467889999999999999999865
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=1.3e-10 Score=84.49 Aligned_cols=102 Identities=10% Similarity=0.046 Sum_probs=76.3
Q ss_pred CCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccc-----cCCCCeeEE
Q 028547 48 HQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDE-----FQTGSFDSV 117 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~-----~~~~~fD~v 117 (207)
+++|||+|||+|..+..+++.- ..+++++|++++.++.+++++... .+++++.+|..+..+ +..+.||+|
T Consensus 57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~i 136 (214)
T d2cl5a1 57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 136 (214)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEE
T ss_pred CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccccee
Confidence 3499999999999999998752 249999999999999999876531 469999999887522 245689999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+..+.-.. ......+.+..++|+|||++++-.
T Consensus 137 fiD~~~~~--------~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 137 FLDHWKDR--------YLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp EECSCGGG--------HHHHHHHHHHTTCEEEEEEEEESC
T ss_pred eecccccc--------cccHHHHHHHhCccCCCcEEEEeC
Confidence 97633221 122334666778999999887643
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=99.06 E-value=3.6e-11 Score=89.15 Aligned_cols=89 Identities=15% Similarity=0.234 Sum_probs=73.2
Q ss_pred cCHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCC
Q 028547 34 PSLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGS 113 (207)
Q Consensus 34 ~~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (207)
..+..+++.....+..+|||||||+|.++..+++.+. +|+++|+++.+++.+++++...+++.++++|+.+. .++...
T Consensus 16 ~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~-~~~~~~ 93 (245)
T d1yuba_ 16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQF-QFPNKQ 93 (245)
T ss_dssp TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTT-TCCCSS
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhccchhhhhhhhhcc-ccccce
Confidence 3456677765545545999999999999999999865 99999999999988888877667899999999998 467777
Q ss_pred eeEEEeCcchh
Q 028547 114 FDSVVDKGTLD 124 (207)
Q Consensus 114 fD~v~~~~~l~ 124 (207)
++.|+++.+++
T Consensus 94 ~~~vv~NLPY~ 104 (245)
T d1yuba_ 94 RYKIVGNIPYH 104 (245)
T ss_dssp EEEEEEECCSS
T ss_pred eeeEeeeeehh
Confidence 78888886654
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=99.06 E-value=3.3e-10 Score=85.25 Aligned_cols=112 Identities=18% Similarity=0.291 Sum_probs=87.5
Q ss_pred hCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHcc------CCCCceEEEeccccccccCCCCee
Q 028547 43 YVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDEFQTGSFD 115 (207)
Q Consensus 43 ~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~fD 115 (207)
...+.+++||-+|.|.|..+.++.+.. ..+++.+|+++..++.+++.++ +.++++++..|+........++||
T Consensus 71 ~~~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yD 150 (274)
T d1iy9a_ 71 FTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYD 150 (274)
T ss_dssp HHSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred hccCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCC
Confidence 334555699999999999999999864 4699999999999999999763 237899999999986444567899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|+.... +.. +....-....+++.+.+.|+|||+++...
T Consensus 151 vIi~D~~-~p~--~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 151 VIMVDST-EPV--GPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp EEEESCS-SCC--SCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCC-CCC--CcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 9997642 211 11122357789999999999999999765
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=5e-10 Score=83.27 Aligned_cols=109 Identities=10% Similarity=0.074 Sum_probs=76.9
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccc-----cccCCCCeeEEEe
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQM-----DEFQTGSFDSVVD 119 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~-----~~~~~~~fD~v~~ 119 (207)
.++||+|||+|..+..++...+ .+++|+|+++++++.|+++.... .++.+...+.... .....++||+|+|
T Consensus 63 ~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivs 142 (250)
T d2h00a1 63 RRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMC 142 (250)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEE
T ss_pred ceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEEe
Confidence 3899999999999999888632 39999999999999999997632 4566666554432 1124568999999
Q ss_pred CcchhhhccCC--------------------CC--------hhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 120 KGTLDSLLCGS--------------------NS--------RQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 120 ~~~l~~~~~~~--------------------~~--------~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+.++..-.... .. ......++++..+.+++.|.+....
T Consensus 143 NPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~i 208 (250)
T d2h00a1 143 NPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCML 208 (250)
T ss_dssp CCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEE
T ss_pred cCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEe
Confidence 99887421000 00 1246667777788899989886544
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=5e-10 Score=84.63 Aligned_cols=115 Identities=20% Similarity=0.259 Sum_probs=85.7
Q ss_pred hhCCCCCCcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHcc------CCCCceEEEeccccccccCCCCe
Q 028547 42 LYVPSHHQRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~f 114 (207)
....+.+++||-+|.|.|..+.++.+.. ..+++.+|+++..++.+++.++ ..++++++..|+.+......++|
T Consensus 73 l~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~y 152 (285)
T d2o07a1 73 LCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAF 152 (285)
T ss_dssp HTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCE
T ss_pred hhhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCC
Confidence 3445566699999999999999999864 4699999999999999998764 23789999999998743456789
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
|+|++.. .+.. +....-....+++.+.+.|+|||++++..-+
T Consensus 153 DvIi~D~-~~p~--~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 153 DVIITDS-SDPM--GPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp EEEEEEC-C-------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CEEEEcC-CCCC--CcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 9999763 2221 1122345678899999999999999886543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.03 E-value=1e-09 Score=81.33 Aligned_cols=95 Identities=19% Similarity=0.241 Sum_probs=77.5
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+|||+|||+|.++..+++..+ .+++++|. +..++. .....+++++.+|+.+.. + .+|++++..++|.+
T Consensus 82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~----~~~~~rv~~~~gD~f~~~--p--~aD~~~l~~vLHdw- 151 (244)
T d1fp2a2 82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVEN----LSGSNNLTYVGGDMFTSI--P--NADAVLLKYILHNW- 151 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT----CCCBTTEEEEECCTTTCC--C--CCSEEEEESCGGGS-
T ss_pred eEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHh----CcccCceEEEecCcccCC--C--CCcEEEEEeecccC-
Confidence 4899999999999999999865 49999997 434432 233368999999998752 3 57999999999987
Q ss_pred cCCCChhhHHHHHHHHHHhcCCC---cEEEEEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDK---GVYILVT 157 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pg---G~~~~~~ 157 (207)
+.++...+|+++++.|+|| |.+++..
T Consensus 152 ----~d~~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 152 ----TDKDCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp ----CHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred ----ChHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 7788899999999999998 7777765
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.00 E-value=1.3e-09 Score=82.61 Aligned_cols=114 Identities=18% Similarity=0.325 Sum_probs=87.9
Q ss_pred hhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc------CCCCceEEEeccccccc-cCCCC
Q 028547 42 LYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS------NRPQLKYIKMDVRQMDE-FQTGS 113 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~------~~~~~~~~~~d~~~~~~-~~~~~ 113 (207)
...++++++||-+|.|.|..+.++.+... .+++.+|+++..++.+++.++ ..++++++..|+.+... ...++
T Consensus 75 ~~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~ 154 (290)
T d1xj5a_ 75 LCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGS 154 (290)
T ss_dssp HTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred HhhCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccC
Confidence 33455566999999999999999998743 689999999999999998763 23789999999988632 24568
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
||+|+.... +.. +....-....+++.+.+.|+|||+++...-
T Consensus 155 yDvIi~D~~-dp~--~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 155 YDAVIVDSS-DPI--GPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp EEEEEECCC-CTT--SGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred ccEEEEcCC-CCC--CcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 999997532 211 112234678899999999999999998653
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.00 E-value=3.9e-10 Score=82.54 Aligned_cols=101 Identities=12% Similarity=0.077 Sum_probs=80.6
Q ss_pred CCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccccc------CCCCee
Q 028547 47 HHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEF------QTGSFD 115 (207)
Q Consensus 47 ~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~------~~~~fD 115 (207)
++++|||+|+++|.-+.++++.- -++++.+|.+++..+.|++++... ..++++.+++.+..+. ..++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 34599999999999999998742 249999999999999999987632 4699999999875221 356899
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+|+...- .......++.+.+.|+|||++++-.
T Consensus 139 ~iFiDa~----------k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 139 FIFVDAD----------KDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp EEEECSC----------STTHHHHHHHHHHHBCTTCCEEEET
T ss_pred EEEeccc----------hhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 9996532 2456788999999999999999865
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.94 E-value=5.4e-09 Score=73.72 Aligned_cols=125 Identities=13% Similarity=0.198 Sum_probs=92.5
Q ss_pred CHHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc----ccC
Q 028547 35 SLAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD----EFQ 110 (207)
Q Consensus 35 ~~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~----~~~ 110 (207)
.+.+++..+.++++..++|..+|.|..+..+++.+. +|+|+|.++.++..+++... .++.+++.++.++. ...
T Consensus 6 ll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~~~--~~~~~~~~~f~~~~~~l~~~~ 82 (182)
T d1wg8a2 6 LYQEALDLLAVRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGLHL--PGLTVVQGNFRHLKRHLAALG 82 (182)
T ss_dssp THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCC--TTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhccc--cceeEeehHHHHHHHHHHHcC
Confidence 355677766666666999999999999999999865 99999999999999987643 58899998888752 234
Q ss_pred CCCeeEEEeCcchhhhc--cCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 111 TGSFDSVVDKGTLDSLL--CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
.+.+|.|+...-+...- ............|+...+.|++||.+.+.++....
T Consensus 83 ~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~E 136 (182)
T d1wg8a2 83 VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLE 136 (182)
T ss_dssp CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHH
T ss_pred CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccch
Confidence 57899999753332110 00111235666888999999999999999875543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.92 E-value=4.6e-09 Score=77.70 Aligned_cols=96 Identities=23% Similarity=0.270 Sum_probs=76.2
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.+|||||||+|.++..+++..+ .+++++|..+. ++ ......++.+...|+.+.. |. .|.++...++|.+
T Consensus 83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~----~~~~~~r~~~~~~d~~~~~--P~--ad~~~l~~vlh~~- 152 (243)
T d1kyza2 83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE----DAPSYPGVEHVGGDMFVSI--PK--ADAVFMKWICHDW- 152 (243)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT----TCCCCTTEEEEECCTTTCC--CC--CSCEECSSSSTTS-
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh----hcccCCceEEecccccccC--CC--cceEEEEEEeecC-
Confidence 4899999999999999999865 48999998552 22 2223368999999997753 43 5777877777766
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+.++...+|+++++.|+|||.+++...
T Consensus 153 ----~d~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 153 ----SDEHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp ----CHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred ----CHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence 778999999999999999999988763
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.87 E-value=5.4e-09 Score=80.69 Aligned_cols=108 Identities=14% Similarity=0.191 Sum_probs=78.2
Q ss_pred CcEEEEcCCCchhhHHHHhc----C-C-CcEEEEeCCHHHHHHHHHHccC-CCCceEEEeccccccccCCCCeeEEEeCc
Q 028547 49 QRILIVGCGNSAFSEGMVDD----G-Y-EDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~----~-~-~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~v~~~~ 121 (207)
.+|||.|||+|.++..+... . . .+++|+|+++.++..|+.+..- ..+..+.+.|.... ....+||+|+++.
T Consensus 119 ~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~fD~vi~NP 196 (328)
T d2f8la1 119 VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN--LLVDPVDVVISDL 196 (328)
T ss_dssp EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC--CCCCCEEEEEEEC
T ss_pred CEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccc--cccccccccccCC
Confidence 48999999999999887653 1 1 3799999999999998876542 24566777776654 3567899999998
Q ss_pred chhhhc-----------cCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 122 TLDSLL-----------CGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 122 ~l~~~~-----------~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
++.... ...........+++.+.+.|+|||.+.++..
T Consensus 197 Py~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 197 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 874320 0001112345579999999999999887763
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=2.4e-08 Score=70.27 Aligned_cols=115 Identities=11% Similarity=0.143 Sum_probs=78.7
Q ss_pred HHHHHhhC-CCCCCcEEEEcCCCchhhHHHHhc-C-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc------
Q 028547 37 APLIKLYV-PSHHQRILIVGCGNSAFSEGMVDD-G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD------ 107 (207)
Q Consensus 37 ~~~l~~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~------ 107 (207)
.++.+++. -++..+|||+||++|.+++.+.+. + ...++++|+.+ ....+++.++++|+.+..
T Consensus 11 ~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~---------~~~i~~~~~~~~d~~~~~~~~~~~ 81 (180)
T d1ej0a_ 11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---------MDPIVGVDFLQGDFRDELVMKALL 81 (180)
T ss_dssp HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---------CCCCTTEEEEESCTTSHHHHHHHH
T ss_pred HHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc---------ccccCCceEeecccccchhhhhhh
Confidence 34444432 233449999999999999998875 2 35899999866 223367899999987741
Q ss_pred -ccCCCCeeEEEeCcchhhhccCCCC------hhhHHHHHHHHHHhcCCCcEEEEEEeCCcc
Q 028547 108 -EFQTGSFDSVVDKGTLDSLLCGSNS------RQNATQMLKEVWRVLKDKGVYILVTYGAPI 162 (207)
Q Consensus 108 -~~~~~~fD~v~~~~~l~~~~~~~~~------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 162 (207)
......+|+|++.+....- +... ..-....+.-+.++|++||.|++-.|.+..
T Consensus 82 ~~~~~~~~DlVlSD~ap~~s--g~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~ 141 (180)
T d1ej0a_ 82 ERVGDSKVQVVMSDMAPNMS--GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG 141 (180)
T ss_dssp HHHTTCCEEEEEECCCCCCC--SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred hhccCcceeEEEecccchhc--ccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc
Confidence 1245789999998765431 1110 113445566668999999999999887654
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=8e-08 Score=74.80 Aligned_cols=98 Identities=13% Similarity=0.251 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc--CCCCceEEEecccccc---ccCCCCeeEEEeC
Q 028547 46 SHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMD---EFQTGSFDSVVDK 120 (207)
Q Consensus 46 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~---~~~~~~fD~v~~~ 120 (207)
.+..+|||+-||+|.++..+++.+. +|+|+|.++.+++.|+++.. ...|+.|+.++..+.. ......+|+|+..
T Consensus 211 ~~~~~vlDLycG~G~fsl~La~~~~-~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilD 289 (358)
T d1uwva2 211 QPEDRVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 289 (358)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred CCCceEEEecccccccchhcccccc-EEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeC
Confidence 3344999999999999999998754 99999999999999999876 3378999999888742 2235679999976
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
.+=.. ....++.+.+. +|.-++|+
T Consensus 290 PPR~G----------~~~~~~~l~~~-~~~~ivYV 313 (358)
T d1uwva2 290 PARAG----------AAGVMQQIIKL-EPIRIVYV 313 (358)
T ss_dssp CCTTC----------CHHHHHHHHHH-CCSEEEEE
T ss_pred CCCcc----------HHHHHHHHHHc-CCCEEEEE
Confidence 44332 23456666654 56554443
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.72 E-value=1.1e-08 Score=74.31 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=76.5
Q ss_pred HHHHHHhh-CCCCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCC
Q 028547 36 LAPLIKLY-VPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 36 ~~~~l~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (207)
+.+++..+ ..+.+.+|||.|||+|.++..+.+.. ...++|+|+++..+..+ ....+++.|..... ...
T Consensus 7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~-------~~~~~~~~~~~~~~--~~~ 77 (223)
T d2ih2a1 7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAEGILADFLLWE--PGE 77 (223)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEEEEESCGGGCC--CSS
T ss_pred HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc-------ccceeeeeehhccc--ccc
Confidence 34433333 33444599999999999988877642 24799999998543222 24567777877763 457
Q ss_pred CeeEEEeCcchhhhccCC----------------------CChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 113 SFDSVVDKGTLDSLLCGS----------------------NSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~----------------------~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
.||+|+++.++....... ....-...+++.+.+.|++||.+.++..
T Consensus 78 ~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 78 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 899999998864431110 0011245678889999999999888763
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=7.4e-08 Score=69.07 Aligned_cols=96 Identities=11% Similarity=0.155 Sum_probs=78.0
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc--CCCCceEEEeccccccccCCCCeeEEEeCcchhh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 125 (207)
.+|+|+|+|.|-=+.-++-..+ .+++.+|.+..-+...++... +..|+.+++..+.+.. ...+||+|++.++
T Consensus 67 ~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~--~~~~fD~V~sRA~--- 141 (207)
T d1jsxa_ 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP--SEPPFDGVISRAF--- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC--CCSCEEEEECSCS---
T ss_pred CceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc--cccccceehhhhh---
Confidence 3999999999988888877654 499999999988877776544 3368999999999873 4568999998754
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.....+++-+.+.++++|.+++.-
T Consensus 142 --------~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 --------ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp --------SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred --------cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 455788888999999999988765
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=1.7e-07 Score=70.08 Aligned_cols=85 Identities=18% Similarity=0.303 Sum_probs=66.6
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEeccccccccCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~ 112 (207)
+..+++.........|||||+|.|.++..+++.+. +++++|+++.+++..++++... .++.++.+|+.+.. .+
T Consensus 10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~-~~-- 85 (278)
T d1zq9a1 10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD-LP-- 85 (278)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC-CC--
T ss_pred HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh-hh--
Confidence 34555554444445999999999999999999875 9999999999999999987643 57899999999873 33
Q ss_pred CeeEEEeCcchh
Q 028547 113 SFDSVVDKGTLD 124 (207)
Q Consensus 113 ~fD~v~~~~~l~ 124 (207)
.++.|+++.+++
T Consensus 86 ~~~~vV~NLPY~ 97 (278)
T d1zq9a1 86 FFDTCVANLPYQ 97 (278)
T ss_dssp CCSEEEEECCGG
T ss_pred hhhhhhcchHHH
Confidence 356788876654
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=2.8e-08 Score=73.52 Aligned_cols=70 Identities=13% Similarity=0.215 Sum_probs=58.7
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM 106 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~ 106 (207)
+..+++.....++..|||||||.|.++..+++.+. +++++|+++.+++..+++....+++.++.+|+.+.
T Consensus 10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~ 79 (252)
T d1qyra_ 10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGC
T ss_pred HHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhhhccchhHHhhhhhhh
Confidence 44556555445455999999999999999999865 99999999999999988776557899999999986
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=7.7e-08 Score=72.53 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=82.4
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC--CCceEEEeccccccccCCCCeeEEEeC
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
.++++.+|||+++|.|.=+..+++.+. ..++++|+++.-+...++++... .++.....|...........||.|+..
T Consensus 99 ~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~D 178 (284)
T d1sqga2 99 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD 178 (284)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred CccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEe
Confidence 345556999999999988888887654 48999999998888888876533 344444444433322345789999987
Q ss_pred cchhhhccCCC-C--------------hhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 121 GTLDSLLCGSN-S--------------RQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 121 ~~l~~~~~~~~-~--------------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.+....+.-.. + ......+|..+.+.|+|||.++.+|++-.
T Consensus 179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 234 (284)
T d1sqga2 179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 234 (284)
T ss_dssp CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence 66544331111 1 12467788888999999999999997543
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.60 E-value=2.8e-07 Score=70.31 Aligned_cols=117 Identities=9% Similarity=0.026 Sum_probs=85.4
Q ss_pred CCCCCCcEEEEcCCCchhhHHHHhcC--CCcEEEEeCCHHHHHHHHHHccC--CCCceEEEeccccccccCCCCeeEEEe
Q 028547 44 VPSHHQRILIVGCGNSAFSEGMVDDG--YEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEFQTGSFDSVVD 119 (207)
Q Consensus 44 ~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~fD~v~~ 119 (207)
.++++.+|||++||.|.=+..++... ...++++|.++.-++.+++++.. ..++.+...|.... +.....||.|+.
T Consensus 113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~-~~~~~~fD~ILv 191 (313)
T d1ixka_ 113 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI-GELNVEFDKILL 191 (313)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG-GGGCCCEEEEEE
T ss_pred cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccc-ccccccccEEEE
Confidence 34555699999999998777776642 24799999999998888877653 35777777787776 345678999998
Q ss_pred CcchhhhccCC--------CCh-------hhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 120 KGTLDSLLCGS--------NSR-------QNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 120 ~~~l~~~~~~~--------~~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
..+....+.-. ... .....++.++.+.|+|||.++.+|++-.
T Consensus 192 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~ 248 (313)
T d1ixka_ 192 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 248 (313)
T ss_dssp ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred ccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence 76554432111 011 2467788888999999999999997544
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.46 E-value=7.1e-07 Score=70.94 Aligned_cols=126 Identities=16% Similarity=0.177 Sum_probs=86.3
Q ss_pred ecCccCHHHHH-HhhCCCCCCcEEEEcCCCchhhHHHHhcC--------------CCcEEEEeCCHHHHHHHHHHcc--C
Q 028547 30 YQKYPSLAPLI-KLYVPSHHQRILIVGCGNSAFSEGMVDDG--------------YEDVVNVDISSVVIEAMMKKYS--N 92 (207)
Q Consensus 30 ~~~~~~~~~~l-~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--------------~~~v~~~D~s~~~i~~~~~~~~--~ 92 (207)
+.+.+.+.+++ ....+....+|+|.+||+|.++..+.+.- ...++|+|+++.+...++.+.. .
T Consensus 144 f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g 223 (425)
T d2okca1 144 YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG 223 (425)
T ss_dssp GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT
T ss_pred hccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcC
Confidence 34444455444 44444444699999999999998776631 1259999999999988887643 1
Q ss_pred --CCCceEEEeccccccccCCCCeeEEEeCcchhhhccCC----------CChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 93 --RPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCGS----------NSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 93 --~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~----------~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..+..+...|.... .....||+|+++.++....... ........++..+.+.|++||.+.++.
T Consensus 224 ~~~~~~~i~~~d~l~~--~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 224 IGTDRSPIVCEDSLEK--EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp CCSSCCSEEECCTTTS--CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccceeecCchhhh--hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 13456777777765 3567899999999885321110 112234568999999999999887765
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=3e-06 Score=63.89 Aligned_cols=118 Identities=7% Similarity=-0.010 Sum_probs=78.7
Q ss_pred hCCCCCCcEEEEcCCCchhhHHHHhc--CCCcEEEEeCCHHHHHHHHHHccCC--CCceEEEecccccccc--CCCCeeE
Q 028547 43 YVPSHHQRILIVGCGNSAFSEGMVDD--GYEDVVNVDISSVVIEAMMKKYSNR--PQLKYIKMDVRQMDEF--QTGSFDS 116 (207)
Q Consensus 43 ~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~i~~~~~~~~~~--~~~~~~~~d~~~~~~~--~~~~fD~ 116 (207)
+.+..+.+|||+++|+|.=+..++.. +...++++|+++.-++.+++++... .++.+...|.....+. ..+.||.
T Consensus 90 L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~ 169 (293)
T d2b9ea1 90 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHY 169 (293)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEE
T ss_pred cCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeE
Confidence 33455559999999999888877764 2248999999999999888877633 6788888898876322 2367999
Q ss_pred EEeCcchhhhccCC----------CCh-------hhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 117 VVDKGTLDSLLCGS----------NSR-------QNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 117 v~~~~~l~~~~~~~----------~~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
|+...+....+... ... .....++..+. .++|||.++.+|++-.
T Consensus 170 VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~ 230 (293)
T d2b9ea1 170 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLC 230 (293)
T ss_dssp EEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCC
T ss_pred EeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCC
Confidence 99876644322100 000 01233444444 4789999999997443
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.34 E-value=1.2e-06 Score=63.85 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=75.6
Q ss_pred CcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHcc--CCCCceEEEecccccccc--CCCCeeEEEeCcch
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYS--NRPQLKYIKMDVRQMDEF--QTGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~--~~~~~~~~~~d~~~~~~~--~~~~fD~v~~~~~l 123 (207)
.+|+|+|+|.|-=+.-++-..+ .+++.+|.+..-+.+.+.-.. +..++.+++..+.+.... ..++||+|++..+
T Consensus 72 ~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRAv- 150 (239)
T d1xdza_ 72 NTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV- 150 (239)
T ss_dssp CEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC-
T ss_pred CeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhhh-
Confidence 4899999999988877776433 499999999987777665433 336888888888775211 2468999998754
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.....+++.+...++++|.+++.-
T Consensus 151 ----------a~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 151 ----------ARLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp ----------SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ----------hCHHHHHHHHhhhcccCCEEEEEC
Confidence 556888999999999999988765
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.34 E-value=5.2e-07 Score=70.31 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=74.3
Q ss_pred CcEEEEcCCCchhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCC-----------------CCceEEEeccccccccC
Q 028547 49 QRILIVGCGNSAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNR-----------------PQLKYIKMDVRQMDEFQ 110 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~-----------------~~~~~~~~d~~~~~~~~ 110 (207)
.+|||..||+|..++..+. .+..+|++.|+++.+++.+++++.-+ ..+.+.+.|+.......
T Consensus 47 ~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~ 126 (375)
T d2dula1 47 KIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER 126 (375)
T ss_dssp SEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS
T ss_pred CEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHhh
Confidence 4999999999999997665 45569999999999999999986411 12556667776653234
Q ss_pred CCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 111 TGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 111 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+.||+|.... + -....+++.+.+.++.||++.++.
T Consensus 127 ~~~fDvIDiDP----f-------Gs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 127 HRYFHFIDLDP----F-------GSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp TTCEEEEEECC----S-------SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCcCCcccCCC----C-------CCcHHHHHHHHHHhccCCEEEEEe
Confidence 56799999653 2 233668888999999999998864
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.26 E-value=1.1e-06 Score=64.02 Aligned_cols=98 Identities=11% Similarity=0.087 Sum_probs=62.8
Q ss_pred CCcEEEEcCCCchhhHHHHhc----C-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc---ccCCCCeeEEEe
Q 028547 48 HQRILIVGCGNSAFSEGMVDD----G-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EFQTGSFDSVVD 119 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~----~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~fD~v~~ 119 (207)
+++|||+|++.|.-+.+++.. + .++++++|+.+........ ...++.++.+|..+.. .+....+|+|+.
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~---~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfI 157 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---DMENITLHQGDCSDLTTFEHLREMAHPLIFI 157 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---GCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc---cccceeeeecccccHHHHHHHHhcCCCEEEE
Confidence 449999999999776665532 2 2599999997643222111 2268999999877642 234556888886
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+. |.- .....-+ ...+.|++||++++.+
T Consensus 158 D~~-H~~-------~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 158 DNA-HAN-------TFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp ESS-CSS-------HHHHHHH-HHHHTCCTTCEEEECS
T ss_pred cCC-cch-------HHHHHHH-HHhcccCcCCEEEEEc
Confidence 533 321 2222223 3568999999999865
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.18 E-value=6.4e-07 Score=65.13 Aligned_cols=118 Identities=10% Similarity=0.014 Sum_probs=67.9
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCC-CC-ceEEEeccccccccCCC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNR-PQ-LKYIKMDVRQMDEFQTG 112 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~-~~-~~~~~~d~~~~~~~~~~ 112 (207)
+..+.+...-++..+|+|+|||.|.++..++.... ..+.|+++--..- ......... .+ +.+...+... ..+..
T Consensus 55 l~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~-e~P~~~~~~~~ni~~~~~~~dv~--~l~~~ 131 (257)
T d2p41a1 55 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGH-EEPIPMSTYGWNLVRLQSGVDVF--FIPPE 131 (257)
T ss_dssp HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTS-CCCCCCCSTTGGGEEEECSCCTT--TSCCC
T ss_pred HHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccc-cCCccccccccccccchhhhhHH--hcCCC
Confidence 45555555444445999999999999999998743 3677777632100 000000000 12 2333322222 23567
Q ss_pred CeeEEEeCcchhhhccCCCCh---hhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 113 SFDSVVDKGTLDSLLCGSNSR---QNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
..|+|+|...-. ++ +.. ......++-+.++|+|||.|++-.+++
T Consensus 132 ~~D~vlcDm~es---s~-~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p 178 (257)
T d2p41a1 132 RCDTLLCDIGES---SP-NPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 178 (257)
T ss_dssp CCSEEEECCCCC---CS-SHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred cCCEEEeeCCCC---CC-CchhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence 899999984321 11 111 123355677789999999999988764
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=5.2e-06 Score=67.55 Aligned_cols=127 Identities=9% Similarity=0.008 Sum_probs=80.7
Q ss_pred cCccCHHHHH-HhhCCCCCCcEEEEcCCCchhhHHHHhc----C---------------CCcEEEEeCCHHHHHHHHHHc
Q 028547 31 QKYPSLAPLI-KLYVPSHHQRILIVGCGNSAFSEGMVDD----G---------------YEDVVNVDISSVVIEAMMKKY 90 (207)
Q Consensus 31 ~~~~~~~~~l-~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~---------------~~~v~~~D~s~~~i~~~~~~~ 90 (207)
.+.+.+..++ ....+..+.+|+|.+||+|.++..+.+. . ...++|+|+++.+...++-++
T Consensus 147 yTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl 226 (524)
T d2ar0a1 147 FTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 226 (524)
T ss_dssp CCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHH
T ss_pred ccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 3334444444 3333444459999999999998876552 1 125899999999998888664
Q ss_pred c--CC-----CCceEEEeccccccccCCCCeeEEEeCcchhhhccC-------CCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 91 S--NR-----PQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLLCG-------SNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 91 ~--~~-----~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~-------~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
. .. ....+...+...........||+|+++.++..-... .........+++.+.+.|++||.+.++
T Consensus 227 ~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiI 306 (524)
T d2ar0a1 227 LLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 306 (524)
T ss_dssp HTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEE
Confidence 3 11 112344444443322345689999999988532100 011123446899999999999998887
Q ss_pred E
Q 028547 157 T 157 (207)
Q Consensus 157 ~ 157 (207)
.
T Consensus 307 l 307 (524)
T d2ar0a1 307 V 307 (524)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.02 E-value=4.5e-06 Score=61.09 Aligned_cols=74 Identities=12% Similarity=-0.013 Sum_probs=58.1
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHc---cC--------CCCceEEEeccccccccCCCCeeEEE
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY---SN--------RPQLKYIKMDVRQMDEFQTGSFDSVV 118 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~---~~--------~~~~~~~~~d~~~~~~~~~~~fD~v~ 118 (207)
+|||..||.|..+..++..|+ +|+++|-++......+..+ .. ..+++++++|..++..-...+||+|+
T Consensus 91 ~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIY 169 (250)
T d2oyra1 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_dssp CEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred EEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEEE
Confidence 899999999999999999987 9999999997655544322 21 12689999999886443457899999
Q ss_pred eCcchh
Q 028547 119 DKGTLD 124 (207)
Q Consensus 119 ~~~~l~ 124 (207)
...++.
T Consensus 170 lDPMFp 175 (250)
T d2oyra1 170 LDPMFP 175 (250)
T ss_dssp ECCCCC
T ss_pred ECCCCc
Confidence 877664
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.48 E-value=0.00013 Score=55.40 Aligned_cols=57 Identities=14% Similarity=0.080 Sum_probs=49.7
Q ss_pred CcEEEEcCCCchhhHHHHhcC-CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc
Q 028547 49 QRILIVGCGNSAFSEGMVDDG-YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM 106 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~-~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~ 106 (207)
..|||+|.|.|.++..+.+.+ ..+++++|+++...+..++.+.+ .++.++..|+..+
T Consensus 45 ~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~-~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 45 LKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG-SPLQILKRDPYDW 102 (322)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT-SSCEEECSCTTCH
T ss_pred CeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC-CCcEEEeCchhhc
Confidence 389999999999999998864 46899999999999999988765 6899999998764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.47 E-value=0.00074 Score=45.95 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=64.6
Q ss_pred CCCCCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc---------cccCCCCe
Q 028547 45 PSHHQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM---------DEFQTGSF 114 (207)
Q Consensus 45 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~---------~~~~~~~f 114 (207)
.+++.+||-+|||. |.++..+++....+++++|.+++-++.+++.-.. ..+..+-... .......+
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~----~~~~~~~~~~~~~~~~~~~~~~~g~g~ 99 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD----VTLVVDPAKEEESSIIERIRSAIGDLP 99 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS----EEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCc----EEEeccccccccchhhhhhhcccccCC
Confidence 34444899999985 7777777775334999999999999999875322 1222221111 01124568
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
|+|+..- .....++.+.++++++|.+++....
T Consensus 100 D~vid~~-------------g~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 100 NVTIDCS-------------GNEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp SEEEECS-------------CCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred ceeeecC-------------CChHHHHHHHHHHhcCCceEEEecC
Confidence 9998541 1245678888999999999887643
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.46 E-value=0.00048 Score=47.28 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=66.3
Q ss_pred HHhhCCCCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc----cccCCCC
Q 028547 40 IKLYVPSHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----DEFQTGS 113 (207)
Q Consensus 40 l~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~ 113 (207)
++....+++.+||-+|||. |.++..+++. +...++++|.++.-++.+++.-. ..++..+-.+. ....++.
T Consensus 21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga----~~~i~~~~~~~~~~i~~~t~gg 96 (174)
T d1f8fa2 21 INALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA----THVINSKTQDPVAAIKEITDGG 96 (174)
T ss_dssp HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC----SEEEETTTSCHHHHHHHHTTSC
T ss_pred HHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC----eEEEeCCCcCHHHHHHHHcCCC
Confidence 3333344445899999975 5566666654 56688899999999999887521 23333222221 1123568
Q ss_pred eeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 114 FDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 114 fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+|+|+..- .....++.+.++++|+|.+++...
T Consensus 97 ~D~vid~~-------------G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 97 VNFALEST-------------GSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEEEEECS-------------CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred CcEEEEcC-------------CcHHHHHHHHhcccCceEEEEEee
Confidence 99999541 124567788999999999987653
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.34 E-value=0.0013 Score=44.99 Aligned_cols=99 Identities=13% Similarity=0.230 Sum_probs=65.2
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc----cc-cCCCCeeEEE
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----DE-FQTGSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~----~~-~~~~~fD~v~ 118 (207)
+++.+||-+|||. |..+..+++. |..+|+++|.+++-++.+++.-.. .++...-.+. .. .....+|+|+
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~----~~i~~~~~~~~~~v~~~t~g~G~D~vi 101 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT----DILNYKNGHIEDQVMKLTNGKGVDRVI 101 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS----EEECGGGSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcc----ccccccchhHHHHHHHHhhccCcceEE
Confidence 3444899999987 8888888886 345899999999988888775211 2222211111 11 1235699998
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
..-. ....++...+.++|+|.+++.....+
T Consensus 102 d~~g-------------~~~~~~~a~~~~~~~G~iv~~G~~~~ 131 (174)
T d1jqba2 102 MAGG-------------GSETLSQAVKMVKPGGIISNINYHGS 131 (174)
T ss_dssp ECSS-------------CTTHHHHHHHHEEEEEEEEECCCCCS
T ss_pred EccC-------------CHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 6421 12356777899999999998765433
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.001 Score=45.37 Aligned_cols=103 Identities=13% Similarity=0.148 Sum_probs=66.4
Q ss_pred hhCCCCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc-------cccCCC
Q 028547 42 LYVPSHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-------DEFQTG 112 (207)
Q Consensus 42 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~ 112 (207)
+...+++.+||-+|||. |.++..+++. |..+|+++|.++.-++.+++.-.. .+...+-.+. ......
T Consensus 21 ~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~----~~~~~~~~~~~~~~~~~~~~~g~ 96 (171)
T d1pl8a2 21 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD----LVLQISKESPQEIARKVEGQLGC 96 (171)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS----EEEECSSCCHHHHHHHHHHHHTS
T ss_pred HhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc----ccccccccccccccccccccCCC
Confidence 33334445999999986 6666666665 556899999999999999875221 2222211111 001235
Q ss_pred CeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 113 SFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 113 ~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.+|+|+..- .....++...+.++++|.+++......
T Consensus 97 g~Dvvid~~-------------G~~~~~~~a~~~~~~gG~iv~~G~~~~ 132 (171)
T d1pl8a2 97 KPEVTIECT-------------GAEASIQAGIYATRSGGTLVLVGLGSE 132 (171)
T ss_dssp CCSEEEECS-------------CCHHHHHHHHHHSCTTCEEEECSCCCS
T ss_pred CceEEEecc-------------CCchhHHHHHHHhcCCCEEEEEecCCC
Confidence 789998641 124568888999999999988765443
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=97.26 E-value=0.0019 Score=48.27 Aligned_cols=74 Identities=14% Similarity=0.210 Sum_probs=61.4
Q ss_pred cEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+|||+-||.|.+..-+...|+..+.++|+++.+.+..+.++.. .+...|+.+.........|+++...+...++
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~----~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS 75 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA----KLIKGDISKISSDEFPKCDGIIGGPPCQSWS 75 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCS----EEEESCTTTSCGGGSCCCSEEEECCCCTTTS
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC----CCccCChhhCCHhHcccccEEeecccccccc
Confidence 7999999999999888888886777999999999998888743 5678899987543445789999998887775
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.14 E-value=0.00016 Score=50.09 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=62.9
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccc----ccc-cCCCCee
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ----MDE-FQTGSFD 115 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~----~~~-~~~~~fD 115 (207)
+++.+||-+|+|. |.++..+++. |+.+|+++|.+++.++.+++.-.. .++.. +..+ ... .....+|
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~----~vi~~~~~~~~~~~~~i~~~~~~~g~D 102 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD----LTLNRRETSVEERRKAIMDITHGRGAD 102 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS----EEEETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEECCCccchhheecccccccccccccccccccccccccccce----EEEeccccchHHHHHHHHHhhCCCCce
Confidence 3445999999985 7777777775 445899999999999998764211 22211 1111 000 1245699
Q ss_pred EEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 116 SVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 116 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
+|+..-. ....++...+.|+++|.+++....
T Consensus 103 vvid~vG-------------~~~~~~~a~~~l~~~G~iv~~G~~ 133 (182)
T d1vj0a2 103 FILEATG-------------DSRALLEGSELLRRGGFYSVAGVA 133 (182)
T ss_dssp EEEECSS-------------CTTHHHHHHHHEEEEEEEEECCCC
T ss_pred EEeecCC-------------chhHHHHHHHHhcCCCEEEEEeec
Confidence 9985311 123567788999999999877543
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.13 E-value=0.0009 Score=51.18 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=70.3
Q ss_pred cEEEEcCCCchhhHHHHhc------------C----C-CcEEEEeCCHHHHHHHHHHccCC----CC--ceEEEeccccc
Q 028547 50 RILIVGCGNSAFSEGMVDD------------G----Y-EDVVNVDISSVVIEAMMKKYSNR----PQ--LKYIKMDVRQM 106 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~------------~----~-~~v~~~D~s~~~i~~~~~~~~~~----~~--~~~~~~d~~~~ 106 (207)
+|.|+||.+|..+..+... + . -+|.--|.-..--...=+.++.. ++ +.-+.+.+..-
T Consensus 54 ~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~r 133 (359)
T d1m6ex_ 54 AIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGR 133 (359)
T ss_dssp CCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSC
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhhh
Confidence 7999999999888544332 1 1 14555564332211111122211 11 12233455554
Q ss_pred cccCCCCeeEEEeCcchhhhccCCC---------------C-----------hhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 107 DEFQTGSFDSVVDKGTLDSLLCGSN---------------S-----------RQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 107 ~~~~~~~fD~v~~~~~l~~~~~~~~---------------~-----------~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
-+|.++.|++++...+||++-.+. + ..|...+|+.-++-|+|||.++++.++.
T Consensus 134 -LfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr 212 (359)
T d1m6ex_ 134 -LFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR 212 (359)
T ss_dssp -CSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred -cCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 378999999999999999852110 0 2478889999999999999999988765
Q ss_pred cc
Q 028547 161 PI 162 (207)
Q Consensus 161 ~~ 162 (207)
+.
T Consensus 213 ~~ 214 (359)
T d1m6ex_ 213 RS 214 (359)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=96.98 E-value=0.0043 Score=46.50 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=61.0
Q ss_pred CCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 48 HQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 48 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+.+|||+-||.|.++.-+.+.|+..+.++|+++.+++..+.+++.. .+.|+.+..+.....+|+++...+...++
T Consensus 11 ~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-----~~~Di~~~~~~~~~~~Dll~ggpPCq~fS 85 (327)
T d2c7pa1 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----PEGDITQVNEKTIPDHDILCAGFPCQAFS 85 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----CBSCGGGSCGGGSCCCSEEEEECCCTTTC
T ss_pred CCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-----CcCchhcCchhhcceeeeeecccccchhh
Confidence 3599999999999999998888866778999999999999998642 24788887444445789999988877765
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.91 E-value=0.003 Score=43.15 Aligned_cols=98 Identities=14% Similarity=0.102 Sum_probs=66.2
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc-----c-cccCCCCeeEE
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-----M-DEFQTGSFDSV 117 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~-----~-~~~~~~~fD~v 117 (207)
+++.+||-+|||. |.++..+++. |...|+.+|.+++-++.+++.-.. .++...-.+ . .......+|+|
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~~~~~~~~~~G~d~v 102 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT----DCLNPRELDKPVQDVITELTAGGVDYS 102 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS----EEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC----cccCCccchhhhhhhHhhhhcCCCcEE
Confidence 4445999999987 8888888776 456899999999988888875221 222211111 0 01234679999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEEeCC
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTYGA 160 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~~~ 160 (207)
+.. ......++...+.++++ |.+++.....
T Consensus 103 ie~-------------~G~~~~~~~a~~~~~~g~G~~v~vG~~~ 133 (174)
T d1e3ia2 103 LDC-------------AGTAQTLKAAVDCTVLGWGSCTVVGAKV 133 (174)
T ss_dssp EES-------------SCCHHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred EEe-------------cccchHHHHHHHHhhcCCeEEEecCCCC
Confidence 864 12355788899999996 9998876433
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.88 E-value=0.0012 Score=49.18 Aligned_cols=55 Identities=5% Similarity=0.082 Sum_probs=46.3
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
+..++.....+.. .|||.-||+|..+....+.|- +.+|+|++++.++.+++|+..
T Consensus 240 ~~rlI~~~s~~gd-iVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 240 PEFFIRMLTEPDD-LVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHHCCTTC-EEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred HHHhhhhcccCCC-EEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHh
Confidence 4456666555555 999999999999998888876 999999999999999999865
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.85 E-value=0.0073 Score=40.73 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=61.0
Q ss_pred cEEEEcCCC--chhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 50 RILIVGCGN--SAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+|+-+|||. |.++..+.+.++ .+|+++|.+++.++.+++.- .+.....+.... .....|+|+..-+.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~----~~~~~~~~~~~~---~~~~~dlIila~p~--- 72 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG----IIDEGTTSIAKV---EDFSPDFVMLSSPV--- 72 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT----SCSEEESCGGGG---GGTCCSEEEECSCH---
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh----cchhhhhhhhhh---hccccccccccCCc---
Confidence 588899986 456666666775 48999999999999988752 122222222222 23457999865333
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
......++++.+.++++.++.-+.
T Consensus 73 -------~~~~~vl~~l~~~~~~~~ii~d~~ 96 (171)
T d2g5ca2 73 -------RTFREIAKKLSYILSEDATVTDQG 96 (171)
T ss_dssp -------HHHHHHHHHHHHHSCTTCEEEECC
T ss_pred -------hhhhhhhhhhhccccccccccccc
Confidence 456788899999998876665433
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.70 E-value=0.00044 Score=47.15 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=62.6
Q ss_pred CCCCCcEEEEcCC-CchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe-ccccccccCCCCeeEEEeCc
Q 028547 45 PSHHQRILIVGCG-NSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DVRQMDEFQTGSFDSVVDKG 121 (207)
Q Consensus 45 ~~~~~~vLdiG~G-~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~fD~v~~~~ 121 (207)
.+++.+||-+|+| .|.++..+++. |. +++++|.+++.++.+++.-.. .++.. +-.+......+.+|.|+..-
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~----~~i~~~~~~~~~~~~~~~~d~vi~~~ 99 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGAD----HYIATLEEGDWGEKYFDTFDLIVVCA 99 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCS----EEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCc----EEeeccchHHHHHhhhcccceEEEEe
Confidence 3444599999998 47777777764 55 899999999988988775211 23321 11121112356799888631
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGA 160 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 160 (207)
.-.. ...+....+.|+|+|.+++.....
T Consensus 100 ~~~~-----------~~~~~~~~~~l~~~G~iv~~G~~~ 127 (168)
T d1piwa2 100 SSLT-----------DIDFNIMPKAMKVGGRIVSISIPE 127 (168)
T ss_dssp SCST-----------TCCTTTGGGGEEEEEEEEECCCCC
T ss_pred cCCc-----------cchHHHHHHHhhccceEEEecccc
Confidence 1110 011345688999999998876433
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.69 E-value=0.0021 Score=46.38 Aligned_cols=54 Identities=9% Similarity=0.079 Sum_probs=43.9
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS 91 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~ 91 (207)
+..+++.+..+.. .|||.-||+|..+....+.+- +.+|+|++++.++.|++++.
T Consensus 202 ~~~lI~~~s~~gd-~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 202 IERIIRASSNPND-LVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHCCTTC-EEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCC-EEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence 3345555544555 999999999999988888875 99999999999999998863
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.65 E-value=0.0068 Score=40.72 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=62.0
Q ss_pred HHhhCCCCCCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc----cccCCCCe
Q 028547 40 IKLYVPSHHQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----DEFQTGSF 114 (207)
Q Consensus 40 l~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~f 114 (207)
++....+++.+||-+|+|. |.++..+++....+|+++|.++..++.+++.-. ..++..+-.+. .....+.+
T Consensus 20 l~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga----~~~i~~~~~~~~~~~~~~~~g~~ 95 (166)
T d1llua2 20 LKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA----SLTVNARQEDPVEAIQRDIGGAH 95 (166)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC----SEEEETTTSCHHHHHHHHHSSEE
T ss_pred HHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc----cccccccchhHHHHHHHhhcCCc
Confidence 3444344445888899986 777777777533599999999999998877422 12332221111 11122334
Q ss_pred eEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 115 DSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+.|++... ...++...+.|+++|.+++...
T Consensus 96 ~~i~~~~~--------------~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 96 GVLVTAVS--------------NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp EEEECCSC--------------HHHHHHHHTTEEEEEEEEECCC
T ss_pred cccccccc--------------chHHHHHHHHhcCCcEEEEEEe
Confidence 44443211 3457788899999999987654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.61 E-value=0.012 Score=39.42 Aligned_cols=87 Identities=14% Similarity=0.132 Sum_probs=58.5
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+|.-||+|. +.++..+.+.|+ +|+++|.+++.++.+++.- .+.....+... -...|+|+..-+.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~----~~~~~~~~~~~-----~~~~DiIilavp~---- 67 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQ----LVDEAGQDLSL-----LQTAKIIFLCTPI---- 67 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT----SCSEEESCGGG-----GTTCSEEEECSCH----
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhh----ccceeeeeccc-----ccccccccccCcH----
Confidence 577788884 456677777788 9999999999888877642 11112222221 2457988864332
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEE
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILV 156 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~ 156 (207)
......++++...++++.+++-.
T Consensus 68 ------~~~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 68 ------QLILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp ------HHHHHHHHHHGGGSCTTCEEEEC
T ss_pred ------hhhhhhhhhhhhhcccccceeec
Confidence 45688889999988888766543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.0064 Score=41.04 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=61.3
Q ss_pred CCCCCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 45 PSHHQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 45 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
.+++.+||-+|+|. |.++..+++....+++++|.+++-++.+++.-. -.++...-........+.+|.++..-.-
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGa----d~~i~~~~~~~~~~~~~~~D~vid~~g~ 103 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA----DEVVNSRNADEMAAHLKSFDFILNTVAA 103 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC----SEEEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCC----cEEEECchhhHHHHhcCCCceeeeeeec
Confidence 34445899999975 777777777533378889988888887776422 1233222112111234679998854211
Q ss_pred hhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 124 DSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
...++...+.++++|.+++...
T Consensus 104 -------------~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 104 -------------PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp -------------CCCHHHHHTTEEEEEEEEECCC
T ss_pred -------------chhHHHHHHHHhcCCEEEEecc
Confidence 1235667889999999988653
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.45 E-value=0.013 Score=39.77 Aligned_cols=100 Identities=11% Similarity=0.114 Sum_probs=62.2
Q ss_pred CCCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc-----c-cccCCCCeeE
Q 028547 45 PSHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-----M-DEFQTGSFDS 116 (207)
Q Consensus 45 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~-----~-~~~~~~~fD~ 116 (207)
.+++.+||-+|||. |..+..+++. |..+|+++|.+++-++.+++.-. ..++...-.+ . .....+.+|.
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa----~~~i~~~~~d~~~~~~~~~~~~~G~d~ 100 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA----TECLNPKDYDKPIYEVICEKTNGGVDY 100 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC----SEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCC----cEEEcCCCchhHHHHHHHHhcCCCCcE
Confidence 34445999999986 5566656654 56799999999999999987522 2233211111 0 1123457899
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCC-CcEEEEEEeCCc
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKD-KGVYILVTYGAP 161 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~~~~~~~~~~ 161 (207)
|+..- .....++.....+++ +|.+++.....+
T Consensus 101 vid~~-------------g~~~~~~~~~~~~~~~~G~~v~vG~~~~ 133 (174)
T d1p0fa2 101 AVECA-------------GRIETMMNALQSTYCGSGVTVVLGLASP 133 (174)
T ss_dssp EEECS-------------CCHHHHHHHHHTBCTTTCEEEECCCCCT
T ss_pred EEEcC-------------CCchHHHHHHHHHHHhcCceEEEEEecC
Confidence 88541 123456666776655 599888775444
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.42 E-value=0.0017 Score=45.32 Aligned_cols=109 Identities=11% Similarity=0.097 Sum_probs=66.6
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEE---eccccc-cc-cCCCCeeEEE
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK---MDVRQM-DE-FQTGSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~---~d~~~~-~~-~~~~~fD~v~ 118 (207)
+++.+||-+|||. |..+..+++. +...|+++|.++.-++.+++.-.. .++. .|+.+. .. .....+|+++
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~----~~~~~~~~~~~~~i~~~t~g~g~D~vi 99 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE----IADLSLDTPLHEQIAALLGEPEVDCAV 99 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE----EEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcccc----EEEeCCCcCHHHHHHHHhCCCCcEEEE
Confidence 4445999999998 7677777764 556999999999999999875211 1111 111110 00 1345689998
Q ss_pred eCcchhhhccC--CCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 119 DKGTLDSLLCG--SNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 119 ~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
..--....... .-........++.+.+.++|+|.+.+...
T Consensus 100 d~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 100 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred ECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 64221110000 00012245689999999999999988753
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.31 E-value=0.0012 Score=44.82 Aligned_cols=98 Identities=10% Similarity=0.140 Sum_probs=66.8
Q ss_pred CCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 48 HQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 48 ~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
+.+|+-||+|. |..+...+..--.+|+.+|.+++.++..+..+.. ++.+...+-..+. ..-...|+|+..-.+.
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~--~~~~~~~~~~~l~-~~~~~aDivI~aalip-- 106 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS--RVELLYSNSAEIE-TAVAEADLLIGAVLVP-- 106 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG--GSEEEECCHHHHH-HHHHTCSEEEECCCCT--
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc--cceeehhhhhhHH-HhhccCcEEEEeeecC--
Confidence 34999999997 6666666665335999999999999988877654 4555554443331 1234679999764332
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
+.+-+..+-+++.+.+|||.+++=
T Consensus 107 -----G~~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 107 -----GRRAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp -----TSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred -----CcccCeeecHHHHhhcCCCcEEEE
Confidence 223445556788999999888763
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.31 E-value=0.0047 Score=46.43 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=55.3
Q ss_pred CcEEEEcCCCchhhHHHHhcCC--CcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc--cCCCCeeEEEeCcchh
Q 028547 49 QRILIVGCGNSAFSEGMVDDGY--EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKGTLD 124 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~v~~~~~l~ 124 (207)
.+|+|+-||.|.+..-+...|. .-+.++|+++.+++..+.+++ +..+++.|+.+... ++...+|+++...+..
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~---~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq 79 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---HTQLLAKTIEGITLEEFDRLSFDMILMSPPCQ 79 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---TSCEECSCGGGCCHHHHHHHCCSEEEECCC--
T ss_pred CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC---CCCcccCchhhCCHhHcCCCCccEEEeecccc
Confidence 4899999999998887777675 246789999999999988874 45677788887631 2234689999998887
Q ss_pred hhc
Q 028547 125 SLL 127 (207)
Q Consensus 125 ~~~ 127 (207)
.++
T Consensus 80 ~fS 82 (343)
T d1g55a_ 80 PFT 82 (343)
T ss_dssp ---
T ss_pred ccc
Confidence 775
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=96.30 E-value=0.0055 Score=44.27 Aligned_cols=109 Identities=10% Similarity=-0.012 Sum_probs=73.0
Q ss_pred CcEEEEcCCCchhhHHHHhcC----------------------------------------C-CcEEEEeCCHHHHHHHH
Q 028547 49 QRILIVGCGNSAFSEGMVDDG----------------------------------------Y-EDVVNVDISSVVIEAMM 87 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~----------------------------------------~-~~v~~~D~s~~~i~~~~ 87 (207)
..++|.-||+|.+.++.+-.. . ..++|.|+++.+++.++
T Consensus 52 ~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A~ 131 (249)
T d1o9ga_ 52 VTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAAR 131 (249)
T ss_dssp EEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHHH
Confidence 379999999999887665410 0 14578888888888774
Q ss_pred ---HHccC---CCCceEEEecccccccc----CCCCeeEEEeCcchhhhccCC--CChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 88 ---KKYSN---RPQLKYIKMDVRQMDEF----QTGSFDSVVDKGTLDSLLCGS--NSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 88 ---~~~~~---~~~~~~~~~d~~~~~~~----~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
+++.. ...+.+.+.|+.+..+. +....++|++|.++..-.... ...+....+...+.+.+....++++
T Consensus 132 ~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~~~i 211 (249)
T d1o9ga_ 132 RLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAV 211 (249)
T ss_dssp HHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcEEEE
Confidence 34331 24688888998775332 346679999999887653211 2335677888888888865555555
Q ss_pred EE
Q 028547 156 VT 157 (207)
Q Consensus 156 ~~ 157 (207)
+.
T Consensus 212 t~ 213 (249)
T d1o9ga_ 212 TD 213 (249)
T ss_dssp EE
T ss_pred eC
Confidence 43
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=96.27 E-value=0.013 Score=44.80 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=48.5
Q ss_pred CcEEEEcCCCchhhHHHHhcC--------CCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeC
Q 028547 49 QRILIVGCGNSAFSEGMVDDG--------YEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDK 120 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~~--------~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~ 120 (207)
..|+|+|+|+|.++..+.... ..+++.+|.|+...+.-++++....++.. ..++... + ...-+|+++
T Consensus 81 ~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~w-~~~~~~~---~-~~~g~iiaN 155 (365)
T d1zkda1 81 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHW-HDSFEDV---P-EGPAVILAN 155 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEE-ESSGGGS---C-CSSEEEEEE
T ss_pred ceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccccccee-ccChhhc---c-cCCeEEEec
Confidence 389999999999987765531 12689999999877777777665333332 2233332 1 122577777
Q ss_pred cchhhhc
Q 028547 121 GTLDSLL 127 (207)
Q Consensus 121 ~~l~~~~ 127 (207)
..++++.
T Consensus 156 E~fDAlP 162 (365)
T d1zkda1 156 EYFDVLP 162 (365)
T ss_dssp SSGGGSC
T ss_pred ccCcccc
Confidence 7777764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.27 E-value=0.0067 Score=41.08 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=62.9
Q ss_pred CCCcEEEEcCCC-chhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec---cccc-cccCCCCeeEEEeC
Q 028547 47 HHQRILIVGCGN-SAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD---VRQM-DEFQTGSFDSVVDK 120 (207)
Q Consensus 47 ~~~~vLdiG~G~-G~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d---~~~~-~~~~~~~fD~v~~~ 120 (207)
++.+||-+|+|. |.++..+++ .+...++++|.+++-++.+++.... .++..+ .... .......+|+|+..
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~----~~i~~~~~~~~~~~~~~~~~g~d~vid~ 107 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD----HVVDARRDPVKQVMELTRGRGVNVAMDF 107 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS----EEEETTSCHHHHHHHHTTTCCEEEEEES
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc----eeecCcccHHHHHHHhhCCCCceEEEEe
Confidence 334899999986 566566665 4666899999999988888875322 233221 1111 11134569999864
Q ss_pred cchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 121 GTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
. .-...++...+.|+++|.+++..+.
T Consensus 108 ~-------------g~~~~~~~a~~~l~~~G~iv~~G~~ 133 (172)
T d1h2ba2 108 V-------------GSQATVDYTPYLLGRMGRLIIVGYG 133 (172)
T ss_dssp S-------------CCHHHHHHGGGGEEEEEEEEECCCS
T ss_pred c-------------CcchHHHHHHHHHhCCCEEEEEeCc
Confidence 2 1234578889999999999987653
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.23 E-value=0.0043 Score=45.24 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=45.2
Q ss_pred HHHHHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC
Q 028547 36 LAPLIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN 92 (207)
Q Consensus 36 ~~~~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~ 92 (207)
+..++..+..+.. .|||.-||+|..+....+.|- +++|+|+++...+.+++|+..
T Consensus 197 ~~~~I~~~s~~gd-iVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 197 IERLVRALSHPGS-TVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp HHHHHHHHSCTTC-EEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCC-EEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 4455555555555 999999999999988888875 999999999999999998753
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.21 E-value=0.0072 Score=40.77 Aligned_cols=102 Identities=18% Similarity=0.300 Sum_probs=64.3
Q ss_pred HHhhCCCCCCcEEEEcC-C-CchhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc-----cccCC
Q 028547 40 IKLYVPSHHQRILIVGC-G-NSAFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-----DEFQT 111 (207)
Q Consensus 40 l~~~~~~~~~~vLdiG~-G-~G~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~ 111 (207)
+++...+++.+||-+|| | .|.++..+++ .+...|+++|.+++-++.+++.-.. .++..+-.+. .....
T Consensus 20 l~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~----~~i~~~~~~~~~~~~~~~~~ 95 (170)
T d1jvba2 20 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD----YVINASMQDPLAEIRRITES 95 (170)
T ss_dssp HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS----EEEETTTSCHHHHHHHHTTT
T ss_pred HHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc----eeeccCCcCHHHHHHHHhhc
Confidence 34433344459999997 3 3566665555 4556999999999999998875221 2222222211 01134
Q ss_pred CCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 112 GSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 112 ~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
..||+|+... .-...++...+.++|+|.+++...
T Consensus 96 ~~~d~vid~~-------------g~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 96 KGVDAVIDLN-------------NSEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp SCEEEEEESC-------------CCHHHHTTGGGGEEEEEEEEECCS
T ss_pred ccchhhhccc-------------ccchHHHhhhhhcccCCEEEEecc
Confidence 5699999642 124456777899999999987754
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.19 E-value=0.023 Score=38.59 Aligned_cols=99 Identities=11% Similarity=0.113 Sum_probs=60.3
Q ss_pred CCCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe-ccccc-----cccCCCCeeE
Q 028547 45 PSHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DVRQM-----DEFQTGSFDS 116 (207)
Q Consensus 45 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~-d~~~~-----~~~~~~~fD~ 116 (207)
.+++.+|+-+|||. |.++..+++. |..+|+++|.+++-++.+++.-.. .++.- +.... .......+|+
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~----~~in~~~~~~~~~~~~~~~~g~G~d~ 102 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT----ECISPKDSTKPISEVLSEMTGNNVGY 102 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS----EEECGGGCSSCHHHHHHHHHTSCCCE
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc----EEECccccchHHHHHHHHhccccceE
Confidence 34445999999986 5666666665 456999999999999999887432 22221 11110 0113457898
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhc-CCCcEEEEEEeCC
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVL-KDKGVYILVTYGA 160 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~~~~~~~~~ 160 (207)
++... .....++.....+ +++|.+++.....
T Consensus 103 vi~~~-------------g~~~~~~~a~~~~~~~~G~~v~vG~~~ 134 (176)
T d1d1ta2 103 TFEVI-------------GHLETMIDALASCHMNYGTSVVVGVPP 134 (176)
T ss_dssp EEECS-------------CCHHHHHHHHTTSCTTTCEEEECSCCC
T ss_pred EEEeC-------------CchHHHHHHHHHhhcCCeEEEEEEccc
Confidence 88531 1133344445555 5569998876443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.02 Score=38.63 Aligned_cols=94 Identities=10% Similarity=0.083 Sum_probs=60.8
Q ss_pred CCCCcEEEEcC--CCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---ccccc--cccCCCCeeEEE
Q 028547 46 SHHQRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQM--DEFQTGSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~~--~~~~~~~fD~v~ 118 (207)
+++.+||-.|+ |.|..+..+++....++++++-+++..+.+++.-.. .++.. |+.+. .......+|+|+
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~----~vi~~~~~~~~~~i~~~t~~~g~d~v~ 102 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH----EVFNHREVNYIDKIKKYVGEKGIDIII 102 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS----EEEETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcc----cccccccccHHHHhhhhhccCCceEEe
Confidence 34459999996 347777777775333899998888888888764211 22221 11110 112456799999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.... ...++...+.|+|+|.++...
T Consensus 103 d~~g--------------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 103 EMLA--------------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp ESCH--------------HHHHHHHHHHEEEEEEEEECC
T ss_pred eccc--------------HHHHHHHHhccCCCCEEEEEe
Confidence 6411 235788889999999998754
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.04 E-value=0.0033 Score=42.38 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=60.0
Q ss_pred CCCCCcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe---cccc-ccccCCCCeeEEEe
Q 028547 45 PSHHQRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM---DVRQ-MDEFQTGSFDSVVD 119 (207)
Q Consensus 45 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~---d~~~-~~~~~~~~fD~v~~ 119 (207)
.+++.+||-.|+|+ |.....+++....+++++|.+++-++.+++.-.. .++.. |..+ ......+.+|+|+.
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~----~~~~~~~~~~~~~~~~~~~~~~~~v~~ 100 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD----LVVNPLKEDAAKFMKEKVGGVHAAVVT 100 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS----EEECTTTSCHHHHHHHHHSSEEEEEES
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc----eecccccchhhhhcccccCCCceEEee
Confidence 34445899999987 6666666665434899999999999988774211 11111 1111 11112333444443
Q ss_pred CcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 120 KGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
.. -...++...+.|+|+|.+++......
T Consensus 101 ~~--------------~~~~~~~a~~~l~~~G~i~~~g~~~~ 128 (168)
T d1rjwa2 101 AV--------------SKPAFQSAYNSIRRGGACVLVGLPPE 128 (168)
T ss_dssp SC--------------CHHHHHHHHHHEEEEEEEEECCCCSS
T ss_pred cC--------------CHHHHHHHHHHhccCCceEecccccC
Confidence 21 13467888999999999988654333
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.01 E-value=0.1 Score=34.79 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=59.6
Q ss_pred CCCCcEEEEcCCC-chhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccc-cc-----cccCCCCeeEE
Q 028547 46 SHHQRILIVGCGN-SAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVR-QM-----DEFQTGSFDSV 117 (207)
Q Consensus 46 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~-~~-----~~~~~~~fD~v 117 (207)
+++.+||-.|||. |.++..+++. |...|+++|.+++.++.+++.-.. .++...-. +. .......+|+|
T Consensus 27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~----~~i~~~~~~~~~~~~~~~~~~~g~D~v 102 (176)
T d2fzwa2 27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT----ECINPQDFSKPIQEVLIEMTDGGVDYS 102 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS----EEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc----EEEeCCchhhHHHHHHHHHcCCCCcEe
Confidence 4444999999873 5555655554 667899999999888888875322 22221110 10 11134579999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+..- .....++.+..++++||.+++..
T Consensus 103 id~~-------------G~~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 103 FECI-------------GNVKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp EECS-------------CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred eecC-------------CCHHHHHHHHHhhcCCceeEEEE
Confidence 9642 12456778889999987766544
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.53 E-value=0.016 Score=41.95 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=43.2
Q ss_pred eEEEeccccc-cccCCCCeeEEEeCcchhhhccC----CCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 97 KYIKMDVRQM-DEFQTGSFDSVVDKGTLDSLLCG----SNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 97 ~~~~~d~~~~-~~~~~~~fD~v~~~~~l~~~~~~----~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|+.+|..+. ..++++++|+|+...++..-... ..-.......++++.++|+|+|.+++..
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence 5777888874 44688999999999876421100 0001356778899999999999998854
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=94.33 E-value=0.33 Score=35.52 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=70.3
Q ss_pred HHHhhCCCCCCcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-----CCCceEEEecccccc--c---
Q 028547 39 LIKLYVPSHHQRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-----RPQLKYIKMDVRQMD--E--- 108 (207)
Q Consensus 39 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-----~~~~~~~~~d~~~~~--~--- 108 (207)
.+...+......|+.+|||-=.-...+.......++=+|. ++.++.-++.+.. ..+..++..|+.+.+ .
T Consensus 81 ~~~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~ 159 (297)
T d2uyoa1 81 YFNNAVIDGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRS 159 (297)
T ss_dssp HHHHHHHTTCCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHH
T ss_pred HHHHHHhhCCCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHh
Confidence 3444444444577789998644443332211125566663 6666655554431 134567777776531 1
Q ss_pred --cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 109 --FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 109 --~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+....-=++++-+++.++ +++....+++.+.....||+.+++..
T Consensus 160 ~g~d~~~ptl~i~EGvl~YL-----~~~~~~~ll~~i~~~~~~GS~l~~d~ 205 (297)
T d2uyoa1 160 AGFDPSARTAWLAEGLLMYL-----PATAQDGLFTEIGGLSAVGSRIAVET 205 (297)
T ss_dssp TTCCTTSCEEEEECSCGGGS-----CHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred cCCCCCCCEEEEEccccccC-----CHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 122334577778888888 78899999999999999998888754
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.19 E-value=0.018 Score=39.38 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=59.1
Q ss_pred CcEEEEcCCC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEE--------ecccccc-----------c
Q 028547 49 QRILIVGCGN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIK--------MDVRQMD-----------E 108 (207)
Q Consensus 49 ~~vLdiG~G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~--------~d~~~~~-----------~ 108 (207)
.+|+-||+|. |..+...+..-.+.|+.+|.++..++..+......-.+.... ..+.++. .
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l~ 109 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL 109 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHHH
Confidence 4999999997 666666666533499999999998888887654211110000 0000000 0
Q ss_pred cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEE
Q 028547 109 FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYI 154 (207)
Q Consensus 109 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 154 (207)
..-...|+|+....+.. ..-+..+-+++.+.+|||.+++
T Consensus 110 ~~l~~aDlVI~talipG-------~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 110 KELVKTDIAITTALIPG-------KPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHTTCSEEEECCCCTT-------SCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHhhhhheeeeecCC-------cccceeehHHHHHhcCCCcEEE
Confidence 01235799997643332 2333445677899999998876
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.02 E-value=0.17 Score=33.71 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=59.4
Q ss_pred CcEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc---CCCCceEE------EeccccccccCCCCeeEE
Q 028547 49 QRILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---NRPQLKYI------KMDVRQMDEFQTGSFDSV 117 (207)
Q Consensus 49 ~~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~---~~~~~~~~------~~d~~~~~~~~~~~fD~v 117 (207)
++|--+|+|. ..++..|++.|+ +|+.+|.+++.++..++.-. ..+..... ..|..+. ....|+|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~~aD~i 76 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA----VKDADVI 76 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH----HTTCSEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH----hcCCCEE
Confidence 3788899987 356667777887 99999999988887766421 11111111 1122111 2457988
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYIL 155 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 155 (207)
+..- +.......++++...|+++-.+++
T Consensus 77 ii~v----------~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 77 LIVV----------PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp EECS----------CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred EEEE----------chhHHHHHHHHhhhccCCCCEEEE
Confidence 8642 124568899999999999876553
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.98 E-value=0.059 Score=36.49 Aligned_cols=94 Identities=10% Similarity=0.086 Sum_probs=59.9
Q ss_pred CCcEEEEcCC--CchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe--cccc-ccccCCCCeeEEEeCcc
Q 028547 48 HQRILIVGCG--NSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM--DVRQ-MDEFQTGSFDSVVDKGT 122 (207)
Q Consensus 48 ~~~vLdiG~G--~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~--d~~~-~~~~~~~~fD~v~~~~~ 122 (207)
+.+||--|++ .|.+++.+++....+|+++.-+++-.+.+++.-.. .++.. +..+ ......+.+|+|+..-.
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~----~vi~~~~~~~~~~~~~~~~gvD~vid~vg 107 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK----EVLAREDVMAERIRPLDKQRWAAAVDPVG 107 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS----EEEECC---------CCSCCEEEEEECST
T ss_pred CCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccc----eeeecchhHHHHHHHhhccCcCEEEEcCC
Confidence 3489988864 46888888876444999998888888888764222 11111 1111 11224568999886421
Q ss_pred hhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 123 LDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 123 l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
...+....+.|+++|.++.....
T Consensus 108 --------------g~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 108 --------------GRTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp --------------TTTHHHHHHTEEEEEEEEECSCC
T ss_pred --------------chhHHHHHHHhCCCceEEEeecc
Confidence 22477889999999999987643
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.2 Score=35.83 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=53.9
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccccc---------CCC
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEF---------QTG 112 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~---------~~~ 112 (207)
++.+|--|++.| ..+..+++.|+ +|+.++.+++.++.+.+.+... .++.++++|+.+.... .-+
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g 88 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 88 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 348899998887 55667777888 9999999998888877665422 3577888999885211 135
Q ss_pred CeeEEEeCcch
Q 028547 113 SFDSVVDKGTL 123 (207)
Q Consensus 113 ~fD~v~~~~~l 123 (207)
..|+++.+...
T Consensus 89 ~iD~lVnnAg~ 99 (257)
T d1xg5a_ 89 GVDICINNAGL 99 (257)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEecccc
Confidence 78988876544
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.33 Score=32.29 Aligned_cols=94 Identities=9% Similarity=0.063 Sum_probs=60.5
Q ss_pred CCCCcEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc----cc-cCCCCeeEEE
Q 028547 46 SHHQRILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM----DE-FQTGSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~----~~-~~~~~fD~v~ 118 (207)
+++.+||-.|++. |..+..+++....+|++++.+++..+.+++.-.. .++...-.++ .. -....+|+|+
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~----~vi~~~~~d~~~~v~~~t~g~g~d~v~ 102 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW----QVINYREEDLVERLKEITGGKKVRVVY 102 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS----EEEETTTSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe----EEEECCCCCHHHHHHHHhCCCCeEEEE
Confidence 3344888887654 6777888776334999999999999888875322 2332111111 00 1356789988
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.... ...+....+.++++|.+++..
T Consensus 103 d~~g--------------~~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 103 DSVG--------------RDTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp ECSC--------------GGGHHHHHHTEEEEEEEEECC
T ss_pred eCcc--------------HHHHHHHHHHHhcCCeeeecc
Confidence 6422 124667789999999887644
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.49 E-value=0.15 Score=34.19 Aligned_cols=94 Identities=13% Similarity=0.055 Sum_probs=57.8
Q ss_pred CCCCcEEEEcC--CCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc-----cccCCCCeeEEE
Q 028547 46 SHHQRILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-----DEFQTGSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG~--G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~fD~v~ 118 (207)
+++.+||-.|+ |.|.++..+++....+++++.-+++-.+.+++.-.. .++...-.+. .......+|+|+
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~----~vi~~~~~~~~~~v~~~t~~~g~d~v~ 99 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVE----YVGDSRSVDFADEILELTDGYGVDVVL 99 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCS----EEEETTCSTHHHHHHHHTTTCCEEEEE
T ss_pred CCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccccccc----ccccCCccCHHHHHHHHhCCCCEEEEE
Confidence 33348888774 346777777776334888888788777877764211 2222111111 001346799999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..-. ...++.+.++|+++|.++...
T Consensus 100 d~~g--------------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 100 NSLA--------------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp ECCC--------------THHHHHHHHTEEEEEEEEECS
T ss_pred eccc--------------chHHHHHHHHhcCCCEEEEEc
Confidence 6421 235677789999999988753
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.45 E-value=0.5 Score=29.75 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=56.2
Q ss_pred cEEEEcCCC-chh-hHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc---ccCCCCeeEEEeCcchh
Q 028547 50 RILIVGCGN-SAF-SEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~G~-G~~-~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~fD~v~~~~~l~ 124 (207)
+|+-+|+|. |.. +..|.+.|. +|+.+|.+++.++.+...+ +..++.+|..+.. ...-+..|.+++.- .
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t--~ 74 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI----DALVINGDCTKIKTLEDAGIEDADMYIAVT--G 74 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHHHHTTTTTCSEEEECC--S
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh----hhhhccCcccchhhhhhcChhhhhhhcccC--C
Confidence 577787754 322 233444566 9999999999998887654 5678889988752 12346788888631 1
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVY 153 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~ 153 (207)
.+.....+....+.+.+.-++
T Consensus 75 --------~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 75 --------KEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp --------CHHHHHHHHHHHHHTTCCCEE
T ss_pred --------cHHHHHHHHHHHHHcCCceEE
Confidence 123333444556677776443
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=93.41 E-value=0.035 Score=39.52 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=41.6
Q ss_pred eEEEeccccc-cccCCCCeeEEEeCcchhhhc---cCCCCh----hhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 97 KYIKMDVRQM-DEFQTGSFDSVVDKGTLDSLL---CGSNSR----QNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 97 ~~~~~d~~~~-~~~~~~~fD~v~~~~~l~~~~---~~~~~~----~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+++++|..+. ..++++++|+|+...++..-. -...+. ......++++.++|+|+|.+++..
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 5788888884 346789999999998763110 000111 234567889999999999887654
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.37 E-value=0.025 Score=38.12 Aligned_cols=91 Identities=10% Similarity=0.110 Sum_probs=56.6
Q ss_pred CCCCcEEEEcC-CC-chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc--cccCCCCeeEEEeCc
Q 028547 46 SHHQRILIVGC-GN-SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM--DEFQTGSFDSVVDKG 121 (207)
Q Consensus 46 ~~~~~vLdiG~-G~-G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~fD~v~~~~ 121 (207)
+++.+||-.|+ |. |..+..+++....++++++.+++..+.+++.-.. .++ |..+. .......+|+|+...
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~----~~i--~~~~~~~~~~~~~g~D~v~d~~ 99 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE----EAA--TYAEVPERAKAWGGLDLVLEVR 99 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS----EEE--EGGGHHHHHHHTTSEEEEEECS
T ss_pred CCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccc----eee--ehhhhhhhhhcccccccccccc
Confidence 34448898885 33 6777777776334899999888877777764211 122 22221 011346799998521
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
. . .+....+.|+|+|.++...
T Consensus 100 --G---------~----~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 100 --G---------K----EVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp --C---------T----THHHHHTTEEEEEEEEEC-
T ss_pred --c---------h----hHHHHHHHHhcCCcEEEEe
Confidence 1 1 2566789999999988753
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.36 E-value=0.31 Score=34.51 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=56.5
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccccc---------CCCCe
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
++.+|--|++.| .++..+++.|. +|+.+|.+++.++...+.+... .++.++.+|+.+.... ..+..
T Consensus 7 Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~i 85 (244)
T d1yb1a_ 7 GEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV 85 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 446777788877 56677778888 9999999999888877766532 5788999999986211 34578
Q ss_pred eEEEeCcchhh
Q 028547 115 DSVVDKGTLDS 125 (207)
Q Consensus 115 D~v~~~~~l~~ 125 (207)
|+++.+.....
T Consensus 86 dilinnag~~~ 96 (244)
T d1yb1a_ 86 SILVNNAGVVY 96 (244)
T ss_dssp SEEEECCCCCC
T ss_pred ceeEeeccccc
Confidence 99887765543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.01 E-value=0.6 Score=31.12 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=61.9
Q ss_pred CCCCcEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc-----cccCCCCeeEEE
Q 028547 46 SHHQRILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-----DEFQTGSFDSVV 118 (207)
Q Consensus 46 ~~~~~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~fD~v~ 118 (207)
+++.+||-.|++. |..+..+++....+|+++.-+++..+.+++.-.. .++..+-.+. .......+|+|+
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~----~vi~~~~~~~~~~~~~~~~~~Gvd~v~ 103 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFD----AAFNYKTVNSLEEALKKASPDGYDCYF 103 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS----EEEETTSCSCHHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhh----hhcccccccHHHHHHHHhhcCCCceeE
Confidence 3444888888755 5777777776445999999999888888775322 2222211111 112456799999
Q ss_pred eCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 119 DKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..-. ...++...+.|+++|.++...
T Consensus 104 D~vG--------------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 104 DNVG--------------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp ESSC--------------HHHHHHHGGGEEEEEEEEECC
T ss_pred EecC--------------chhhhhhhhhccCCCeEEeec
Confidence 6411 346788899999999998754
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=92.90 E-value=0.28 Score=34.88 Aligned_cols=76 Identities=20% Similarity=0.286 Sum_probs=55.1
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCee
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++++|--|++.| ..+..+++.|+ +|+.+|.+++.++.+.+.+....++.++.+|+.+.... .-+..|
T Consensus 6 gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD 84 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS 84 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCce
Confidence 347777777666 45566777787 89999999998888887776556788999999875211 135789
Q ss_pred EEEeCcchh
Q 028547 116 SVVDKGTLD 124 (207)
Q Consensus 116 ~v~~~~~l~ 124 (207)
+++.+....
T Consensus 85 iLVnnAg~~ 93 (251)
T d1zk4a1 85 TLVNNAGIA 93 (251)
T ss_dssp EEEECCCCC
T ss_pred EEEeccccc
Confidence 888775443
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.84 E-value=0.39 Score=34.06 Aligned_cols=76 Identities=12% Similarity=0.211 Sum_probs=53.8
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccccc---------CCCCe
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
.+.+|--|++.| ..+..+++.|+ +|+.+|.+++.++.+.+.+... .++.++.+|+.+.... .-+..
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i 88 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV 88 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCc
Confidence 446777787766 34555666677 9999999999888887776543 5688899999875211 23678
Q ss_pred eEEEeCcchh
Q 028547 115 DSVVDKGTLD 124 (207)
Q Consensus 115 D~v~~~~~l~ 124 (207)
|+++.+....
T Consensus 89 Dilvnnag~~ 98 (251)
T d2c07a1 89 DILVNNAGIT 98 (251)
T ss_dssp CEEEECCCCC
T ss_pred eeeeeccccc
Confidence 9888775443
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.79 E-value=0.22 Score=33.69 Aligned_cols=92 Identities=14% Similarity=0.152 Sum_probs=57.6
Q ss_pred CcEEEEcC--CCchhhHHHHhc-CCCcEEEEeCCHHHHHHHHHHccCCCCceEEEec---ccc-ccccCCCCeeEEEeCc
Q 028547 49 QRILIVGC--GNSAFSEGMVDD-GYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMD---VRQ-MDEFQTGSFDSVVDKG 121 (207)
Q Consensus 49 ~~vLdiG~--G~G~~~~~l~~~-~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d---~~~-~~~~~~~~fD~v~~~~ 121 (207)
.+||-.|+ |.|..+..+++. |...|+++..+++......+.+.. ..++... +.+ ......+.+|+|+..-
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga---d~vi~~~~~~~~~~~~~~~~~GvDvv~D~v 108 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF---DAAVNYKTGNVAEQLREACPGGVDVYFDNV 108 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC---SEEEETTSSCHHHHHHHHCTTCEEEEEESS
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc---eEEeeccchhHHHHHHHHhccCceEEEecC
Confidence 37888773 568999999985 555677777777666655554432 1222221 111 1112346799999641
Q ss_pred chhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 122 TLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
- ...++...+.|+++|.++..-
T Consensus 109 G--------------g~~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 109 G--------------GDISNTVISQMNENSHIILCG 130 (187)
T ss_dssp C--------------HHHHHHHHTTEEEEEEEEEC-
T ss_pred C--------------chhHHHHhhhccccccEEEec
Confidence 1 235788899999999998753
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.74 E-value=0.81 Score=30.21 Aligned_cols=97 Identities=13% Similarity=0.158 Sum_probs=57.8
Q ss_pred CCCCCcEEEEcCCC-chhhHHHH-hcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe-ccccc-----cccCCCCeeE
Q 028547 45 PSHHQRILIVGCGN-SAFSEGMV-DDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DVRQM-----DEFQTGSFDS 116 (207)
Q Consensus 45 ~~~~~~vLdiG~G~-G~~~~~l~-~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~-d~~~~-----~~~~~~~fD~ 116 (207)
.+++.+||-+|+|. |.....++ ..+...|+++|.+++-.+.+++.-.. .++.. +-.+. .....+.+|+
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~----~~i~~~~~~~~~~~~~~~~~~~G~D~ 101 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT----ECVNPQDYKKPIQEVLTEMSNGGVDF 101 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS----EEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe----eEEecCCchhHHHHHHHHHhcCCCCE
Confidence 34445999999975 33333333 34557999999999988888776322 22221 11111 1123467999
Q ss_pred EEeCcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEEe
Q 028547 117 VVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVTY 158 (207)
Q Consensus 117 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~ 158 (207)
|+.... ....++.....++++ |.+++...
T Consensus 102 vid~~G-------------~~~~~~~a~~~~~~~~g~~~~~~~ 131 (176)
T d2jhfa2 102 SFEVIG-------------RLDTMVTALSCCQEAYGVSVIVGV 131 (176)
T ss_dssp EEECSC-------------CHHHHHHHHHHBCTTTCEEEECSC
T ss_pred EEecCC-------------chhHHHHHHHHHhcCCcceEEecC
Confidence 996422 234566677788886 56655443
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.70 E-value=0.52 Score=33.21 Aligned_cols=73 Identities=18% Similarity=0.416 Sum_probs=54.0
Q ss_pred CCCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc-----CCCCeeEEE
Q 028547 47 HHQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF-----QTGSFDSVV 118 (207)
Q Consensus 47 ~~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~fD~v~ 118 (207)
.++++|--|++.| ..+..+++.|+ +|+.+|.+++.++...+.. .++..++.|+.+.... .-++.|+++
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~g~iDilV 81 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVREC---PGIEPVCVDLGDWEATERALGSVGPVDLLV 81 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHHHHHHTTCCCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHHHHHHHHHhCCceEEE
Confidence 3458888898887 56677788888 9999999998888777665 3577888898774211 235789988
Q ss_pred eCcch
Q 028547 119 DKGTL 123 (207)
Q Consensus 119 ~~~~l 123 (207)
.+...
T Consensus 82 nnAg~ 86 (244)
T d1pr9a_ 82 NNAAV 86 (244)
T ss_dssp ECCCC
T ss_pred ecccc
Confidence 76544
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=92.62 E-value=0.22 Score=35.76 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=55.4
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCee
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++++|--|++.| ..+..+++.|. +|+.+|.+++.++.+.+.+.....+.++.+|+.+.... .-+..|
T Consensus 6 gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 84 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD 84 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCcc
Confidence 347888888877 44566777787 99999999999888888776656788889998875211 135789
Q ss_pred EEEeCcch
Q 028547 116 SVVDKGTL 123 (207)
Q Consensus 116 ~v~~~~~l 123 (207)
+++.+.-.
T Consensus 85 ~lVnnAG~ 92 (268)
T d2bgka1 85 IMFGNVGV 92 (268)
T ss_dssp EEEECCCC
T ss_pred eecccccc
Confidence 88876543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=92.61 E-value=0.43 Score=33.99 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=54.7
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccccc----------CCCC
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEF----------QTGS 113 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~----------~~~~ 113 (207)
++++|-.|+..| ..+..+++.|+ +|+.++.+++.++.+.+.+... .++.++.+|+.+.... ..+.
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g~ 84 (258)
T d1ae1a_ 6 GTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK 84 (258)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 348899998877 55667788888 9999999998888777665532 5677888999875211 2356
Q ss_pred eeEEEeCcchh
Q 028547 114 FDSVVDKGTLD 124 (207)
Q Consensus 114 fD~v~~~~~l~ 124 (207)
.|+++.+....
T Consensus 85 idilinnag~~ 95 (258)
T d1ae1a_ 85 LNILVNNAGVV 95 (258)
T ss_dssp CCEEEECCCCC
T ss_pred cEEEecccccc
Confidence 88888764443
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=92.46 E-value=0.21 Score=35.70 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=53.1
Q ss_pred CCCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccccc---------CCCC
Q 028547 47 HHQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 47 ~~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
.++++|--|++.| ..+..+++.|+ +|+.+|.+++.++.+.+.+... .++.++.+|+.+.... .-+.
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~ 88 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK 88 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3447777777665 34456666777 9999999998888777665532 5788889999875211 1257
Q ss_pred eeEEEeCcchh
Q 028547 114 FDSVVDKGTLD 124 (207)
Q Consensus 114 fD~v~~~~~l~ 124 (207)
.|+++.+.-..
T Consensus 89 iDilvnnAG~~ 99 (255)
T d1fmca_ 89 VDILVNNAGGG 99 (255)
T ss_dssp CCEEEECCCCC
T ss_pred CCEeeeCCcCC
Confidence 89888875443
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=92.46 E-value=0.077 Score=38.87 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=44.5
Q ss_pred CceEEEeccccc-cccCCCCeeEEEeCcchhhhccCC---CCh----hhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 95 QLKYIKMDVRQM-DEFQTGSFDSVVDKGTLDSLLCGS---NSR----QNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 95 ~~~~~~~d~~~~-~~~~~~~fD~v~~~~~l~~~~~~~---~~~----~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+-.++++|..+. ..++++++|+|+...++....... ... +.....+..++++|+|+|.+++..
T Consensus 12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~ 82 (320)
T d1booa_ 12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 82 (320)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccc
Confidence 457889998874 446889999999997764221110 011 235677899999999999998854
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=92.15 E-value=1.3 Score=31.04 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCee
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++++|-.|++.| ..+..+++.|+ +|+..+.+.+.++...+.+. .++.++++|+.+.... .-+..|
T Consensus 5 gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iD 81 (241)
T d2a4ka1 5 GKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALE--AEAIAVVADVSDPKAVEAVFAEALEEFGRLH 81 (241)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCC--SSEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC--CceEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence 347888888876 55667777787 99999999988877766654 3677888998875211 125789
Q ss_pred EEEeCcchhhhc-cCCCChhh-----------HHHHHHHHHHhcCCCcEEEEEEe
Q 028547 116 SVVDKGTLDSLL-CGSNSRQN-----------ATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 116 ~v~~~~~l~~~~-~~~~~~~~-----------~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
+++.+....... ...-+.++ .-.+.+.+...++.++..++.+.
T Consensus 82 iLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss 136 (241)
T d2a4ka1 82 GVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS 136 (241)
T ss_dssp EEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred Eeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccc
Confidence 888875444321 11112222 22334455677777777666553
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=92.06 E-value=0.6 Score=30.79 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=55.1
Q ss_pred CCCCcEEEEcCCCc-hhhHHHHh-cCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccc-----c-cccCCCCeeEE
Q 028547 46 SHHQRILIVGCGNS-AFSEGMVD-DGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQ-----M-DEFQTGSFDSV 117 (207)
Q Consensus 46 ~~~~~vLdiG~G~G-~~~~~l~~-~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~-----~-~~~~~~~fD~v 117 (207)
+++.+|+-+|+|.+ ..+..+++ .+...|+++|.+++-++.+++.-.. .++..+-.+ . .......+|+|
T Consensus 27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd----~~in~~~~~~~~~~~~~~~~~~G~d~v 102 (175)
T d1cdoa2 27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT----DFVNPNDHSEPISQVLSKMTNGGVDFS 102 (175)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC----EEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCc----EEEcCCCcchhHHHHHHhhccCCccee
Confidence 44448999999874 33333333 4556899999999988888875222 233211111 0 01134578999
Q ss_pred EeCcchhhhccCCCChhhHHHHHHHHHHhcCCC-cEEEEEE
Q 028547 118 VDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDK-GVYILVT 157 (207)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~ 157 (207)
+..-. ....+......++++ |.+++..
T Consensus 103 id~~G-------------~~~~~~~a~~~~~~g~~~~~~~g 130 (175)
T d1cdoa2 103 LECVG-------------NVGVMRNALESCLKGWGVSVLVG 130 (175)
T ss_dssp EECSC-------------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred eeecC-------------CHHHHHHHHHHhhCCCcceeEEE
Confidence 86421 234466667777666 5444433
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.32 E-value=0.52 Score=33.27 Aligned_cols=74 Identities=23% Similarity=0.347 Sum_probs=53.9
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCee
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++++|--|++.| ..+..+++.|+ +|+.+|.+++.++...+.+.. +..++.+|+.+.... .-+..|
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 82 (244)
T d1nffa_ 6 GKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELAD--AARYVHLDVTQPAQWKAAVDTAVTAFGGLH 82 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGG--GEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhC--cceEEEeecCCHHHHHHHHHHHHHHhCCCe
Confidence 347788888877 46667788888 999999999988887776643 577888998875211 125689
Q ss_pred EEEeCcchh
Q 028547 116 SVVDKGTLD 124 (207)
Q Consensus 116 ~v~~~~~l~ 124 (207)
+++.+.-..
T Consensus 83 ilinnAG~~ 91 (244)
T d1nffa_ 83 VLVNNAGIL 91 (244)
T ss_dssp EEEECCCCC
T ss_pred EEEECCccc
Confidence 888775443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.00 E-value=0.36 Score=34.26 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=53.3
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC---CCceEEEecccccccc---------CCC
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR---PQLKYIKMDVRQMDEF---------QTG 112 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~---~~~~~~~~d~~~~~~~---------~~~ 112 (207)
++.+|--|++.| ..+..+++.|+ +|..+|.+++.++.+.+.+... .++.++.+|+.+.... .-+
T Consensus 3 GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 3 GKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 347777788776 45566677787 9999999998888777765432 4678888999885211 125
Q ss_pred CeeEEEeCcch
Q 028547 113 SFDSVVDKGTL 123 (207)
Q Consensus 113 ~fD~v~~~~~l 123 (207)
..|+++.+...
T Consensus 82 ~iDilVnnAg~ 92 (254)
T d2gdza1 82 RLDILVNNAGV 92 (254)
T ss_dssp CCCEEEECCCC
T ss_pred CcCeecccccc
Confidence 78998877544
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.90 E-value=0.51 Score=33.48 Aligned_cols=72 Identities=25% Similarity=0.443 Sum_probs=51.3
Q ss_pred cEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccccc---------CCCCeeE
Q 028547 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 50 ~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
.+|--|++.| ..+..+++.|+ +|..+|.+++.++.+.+.+... .++.++.+|+.+.... .-+..|+
T Consensus 3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 81 (255)
T d1gega_ 3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV 81 (255)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence 3466787776 45566777887 9999999998888777665432 5778889999885211 2367899
Q ss_pred EEeCcc
Q 028547 117 VVDKGT 122 (207)
Q Consensus 117 v~~~~~ 122 (207)
++.+.-
T Consensus 82 lVnnAG 87 (255)
T d1gega_ 82 IVNNAG 87 (255)
T ss_dssp EEECCC
T ss_pred EEeccc
Confidence 887643
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.46 E-value=1.2 Score=31.09 Aligned_cols=71 Identities=21% Similarity=0.357 Sum_probs=51.7
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc-----CCCCeeEEEe
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF-----QTGSFDSVVD 119 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~fD~v~~ 119 (207)
++++|--|++.| ..+..+++.|+ +|+.+|.+++.++...+.. .++..+++|+.+.... .-++.|+++.
T Consensus 5 GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVn 80 (242)
T d1cyda_ 5 GLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC---PGIEPVCVDLGDWDATEKALGGIGPVDLLVN 80 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHHHHHHTTCCCCSEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHHHHHHHHHcCCCeEEEE
Confidence 447888888777 45667777887 9999999998877776665 3577888898875211 2367898887
Q ss_pred Ccc
Q 028547 120 KGT 122 (207)
Q Consensus 120 ~~~ 122 (207)
+..
T Consensus 81 nAg 83 (242)
T d1cyda_ 81 NAA 83 (242)
T ss_dssp CCC
T ss_pred CCc
Confidence 643
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.93 E-value=0.77 Score=32.80 Aligned_cols=109 Identities=14% Similarity=0.219 Sum_probs=66.9
Q ss_pred CcEEEE-cCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------CCCCe
Q 028547 49 QRILIV-GCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 49 ~~vLdi-G~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
++|.=| |++.| ..+..+++.+...|+.++.+++.++.+.+.+.. ..++.++.+|+.+.... ..+..
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~i 82 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 82 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCCc
Confidence 466444 55554 233455555333999999999888887776653 36789999999885211 23579
Q ss_pred eEEEeCcchhhhccCCC-Chhh-----------HHHHHHHHHHhcCCCcEEEEEE
Q 028547 115 DSVVDKGTLDSLLCGSN-SRQN-----------ATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 115 D~v~~~~~l~~~~~~~~-~~~~-----------~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
|+++.+.-+........ ..++ .-.+.+.+...|+++|.++.+.
T Consensus 83 DiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 83 DVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp EEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 99998865432211111 1112 2244566677888888877655
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=89.93 E-value=1.4 Score=28.81 Aligned_cols=76 Identities=17% Similarity=0.329 Sum_probs=45.9
Q ss_pred HHHHHhhCCCCCCcEEEEcCCCch--hhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCe
Q 028547 37 APLIKLYVPSHHQRILIVGCGNSA--FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSF 114 (207)
Q Consensus 37 ~~~l~~~~~~~~~~vLdiG~G~G~--~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~f 114 (207)
...++.+.....++||-+|||... ....+.+.|.++++.+.-+.+..+...+.+.. ... + . .....+
T Consensus 6 ~~~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~----~~~--~--~---~~~~~~ 74 (167)
T d1npya1 6 VKLIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGY----AYI--N--S---LENQQA 74 (167)
T ss_dssp HHHHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTC----EEE--S--C---CTTCCC
T ss_pred HHHHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhh----hhh--h--c---ccccch
Confidence 445555544344599999998643 33445556777899999888766666555421 111 1 1 234568
Q ss_pred eEEEeCcch
Q 028547 115 DSVVDKGTL 123 (207)
Q Consensus 115 D~v~~~~~l 123 (207)
|+|+..-++
T Consensus 75 DliINaTpi 83 (167)
T d1npya1 75 DILVNVTSI 83 (167)
T ss_dssp SEEEECSST
T ss_pred hhheecccc
Confidence 988865443
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=89.65 E-value=0.56 Score=33.38 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=54.0
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccccc---------CCCCe
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
++++|--|++.| ..+..+++.|+ +|+.+|.+++.++.+.+.+... .++.++.+|+.+.... .-+..
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (260)
T d1zema1 5 GKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI 83 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 447888888777 45667778887 9999999999888887776543 5678889998874211 13578
Q ss_pred eEEEeCcc
Q 028547 115 DSVVDKGT 122 (207)
Q Consensus 115 D~v~~~~~ 122 (207)
|+++.+.-
T Consensus 84 DilVnnaG 91 (260)
T d1zema1 84 DFLFNNAG 91 (260)
T ss_dssp CEEEECCC
T ss_pred Ceehhhhc
Confidence 98887643
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=89.64 E-value=0.83 Score=32.30 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=51.8
Q ss_pred cEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccccc---------CCCCeeE
Q 028547 50 RILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 50 ~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
.+|--|++.| ..+..+++.|+ +|..+|.+++.++...+.+... .++.++.+|+.+.... .-+..|+
T Consensus 4 ValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 82 (257)
T d2rhca1 4 VALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDV 82 (257)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCSE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCCE
Confidence 4566677666 45566777887 9999999998888877765532 5788899999875211 2357898
Q ss_pred EEeCcch
Q 028547 117 VVDKGTL 123 (207)
Q Consensus 117 v~~~~~l 123 (207)
++.+.-.
T Consensus 83 lVnnAG~ 89 (257)
T d2rhca1 83 LVNNAGR 89 (257)
T ss_dssp EEECCCC
T ss_pred EEecccc
Confidence 8876443
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.35 E-value=1.5 Score=32.36 Aligned_cols=116 Identities=12% Similarity=0.186 Sum_probs=70.0
Q ss_pred HHHHHHhhCCCCC-CcEEEEcCCCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHc-c----------------------
Q 028547 36 LAPLIKLYVPSHH-QRILIVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKY-S---------------------- 91 (207)
Q Consensus 36 ~~~~l~~~~~~~~-~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~-~---------------------- 91 (207)
+...+..++...+ ..|+-+|||.=.....+..... .+..+|++-..+-..|++. .
T Consensus 84 id~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~-~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~ 162 (328)
T d1rjda_ 84 IDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFL 162 (328)
T ss_dssp HHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEE
T ss_pred HHHHHHHHHHHCCCcEEEEeCCccchHHHHhhccCC-CcEEEECCcHHHHHHHHHHHHhchhhhhhcccccccccccccc
Confidence 4445554443332 3899999998766666654433 5556655533333333221 0
Q ss_pred -CCCCceEEEeccccccc--------cCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 92 -NRPQLKYIKMDVRQMDE--------FQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 92 -~~~~~~~~~~d~~~~~~--------~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
...+..++.+|+.+... +..+..=++++-.++.++ +++....+++.+.+.... |.|++-..
T Consensus 163 ~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl-----~~~~~~~li~~~~~~f~~-~~~i~YE~ 232 (328)
T d1rjda_ 163 IDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYM-----HNNESQLLINTIMSKFSH-GLWISYDP 232 (328)
T ss_dssp EECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS-----CHHHHHHHHHHHHHHCSS-EEEEEEEE
T ss_pred CCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcC-----CHHHHHHHHHHHHHhCCC-ceEEEecc
Confidence 11467888888887411 122333478888888888 778889999998888754 55555443
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=89.23 E-value=0.15 Score=34.07 Aligned_cols=92 Identities=15% Similarity=0.205 Sum_probs=59.3
Q ss_pred cEEEEcC--CCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEe-cccc--ccccCCCCeeEEEeCcchh
Q 028547 50 RILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKM-DVRQ--MDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~--G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~-d~~~--~~~~~~~~fD~v~~~~~l~ 124 (207)
.||--|+ |-|.++..+++....+|+++.-+++..+.+++.-.. .++.. +... ......+.+|+|+..- .
T Consensus 26 ~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad----~vi~~~~~~~~~~~~~~~~gvd~vid~v--g 99 (167)
T d1tt7a2 26 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS----EVISREDVYDGTLKALSKQQWQGAVDPV--G 99 (167)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS----EEEEHHHHCSSCCCSSCCCCEEEEEESC--C
T ss_pred EEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhccc----ceEeccchhchhhhcccCCCceEEEecC--c
Confidence 6887765 347888888886334999998888777777765322 12221 1111 1122356799988641 1
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
...+.+..+.|+++|.++.....
T Consensus 100 ------------g~~~~~~~~~l~~~G~iv~~G~~ 122 (167)
T d1tt7a2 100 ------------GKQLASLLSKIQYGGSVAVSGLT 122 (167)
T ss_dssp ------------THHHHHHHTTEEEEEEEEECCCS
T ss_pred ------------HHHHHHHHHHhccCceEEEeecc
Confidence 33577889999999999876643
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=89.19 E-value=0.8 Score=32.19 Aligned_cols=73 Identities=18% Similarity=0.259 Sum_probs=51.7
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCee
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++++|--|++.| ..+..+++.|+ +|+.+|.+++.++...+.+.. +..++.+|+.+.... .-+..|
T Consensus 4 gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (243)
T d1q7ba_ 4 GKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGA--NGKGLMLNVTDPASIESVLEKIRAEFGEVD 80 (243)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGG--GEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCC--CCcEEEEEecCHHHhhhhhhhhhcccCCcc
Confidence 336777777776 45667777788 999999999988887776643 567788898874211 235789
Q ss_pred EEEeCcch
Q 028547 116 SVVDKGTL 123 (207)
Q Consensus 116 ~v~~~~~l 123 (207)
+++.+...
T Consensus 81 ilVnnAg~ 88 (243)
T d1q7ba_ 81 ILVNNAGI 88 (243)
T ss_dssp EEEECCCC
T ss_pred eehhhhhh
Confidence 88876443
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=89.17 E-value=0.25 Score=33.51 Aligned_cols=75 Identities=9% Similarity=0.067 Sum_probs=50.9
Q ss_pred CCCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc--cCCCCeeEEEeCc
Q 028547 47 HHQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE--FQTGSFDSVVDKG 121 (207)
Q Consensus 47 ~~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~fD~v~~~~ 121 (207)
.+++||-.|++.| ..+..+++.|. +|+.++.+++.++...+.+....++.+...|+.+... ..-+..|+++.+.
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin~A 100 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAG 100 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeeecC
Confidence 3458999988766 45566777787 9999999998887777665533355666666665311 1235689998764
Q ss_pred c
Q 028547 122 T 122 (207)
Q Consensus 122 ~ 122 (207)
.
T Consensus 101 g 101 (191)
T d1luaa1 101 A 101 (191)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=88.98 E-value=1.4 Score=31.37 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=65.9
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCC-HHHHHHHHHHcc-CCCCceEEEecccccccc---------CCCC
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDIS-SVVIEAMMKKYS-NRPQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s-~~~i~~~~~~~~-~~~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
++++|--|++.| ..+..+++.|+ +|+.++.+ ++.++...+.+. ...++.++.+|+.+.... ..+.
T Consensus 18 gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 96 (272)
T d1g0oa_ 18 GKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK 96 (272)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 348888888777 46677778888 89998876 445555544433 225688888998874211 2356
Q ss_pred eeEEEeCcchhhhc-cCCCChhh-----------HHHHHHHHHHhcCCCcEEEEEE
Q 028547 114 FDSVVDKGTLDSLL-CGSNSRQN-----------ATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 114 fD~v~~~~~l~~~~-~~~~~~~~-----------~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.|+++.+....... ......++ .-.+.+.+.+.|+.+|..+++.
T Consensus 97 idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 97 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 79888765433221 01112222 3334566677788777766654
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=88.90 E-value=0.4 Score=36.61 Aligned_cols=43 Identities=12% Similarity=0.301 Sum_probs=34.9
Q ss_pred CcEEEEcCCCchhhHHHHhc--C-CCcEEEEeCCHHHHHHHHHHcc
Q 028547 49 QRILIVGCGNSAFSEGMVDD--G-YEDVVNVDISSVVIEAMMKKYS 91 (207)
Q Consensus 49 ~~vLdiG~G~G~~~~~l~~~--~-~~~v~~~D~s~~~i~~~~~~~~ 91 (207)
..++|+|+-.|..+..++.. + ..+|+++|+++...+..++++.
T Consensus 214 ~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~ 259 (395)
T d2py6a1 214 EKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR 259 (395)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred CEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 39999999999888776653 2 3589999999999988887653
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=88.82 E-value=1.3 Score=27.59 Aligned_cols=64 Identities=17% Similarity=0.313 Sum_probs=41.2
Q ss_pred cEEEEcCCC-ch-hhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccc---cCCCCeeEEEe
Q 028547 50 RILIVGCGN-SA-FSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDE---FQTGSFDSVVD 119 (207)
Q Consensus 50 ~vLdiG~G~-G~-~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~fD~v~~ 119 (207)
+++-+|+|. |. ++..|.+.|. +|+.+|.+++.++.++.. ....+.+|..+..- ..-...|.+++
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~-----~~~~~~gd~~~~~~l~~a~i~~a~~vi~ 70 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASY-----ATHAVIANATEENELLSLGIRNFEYVIV 70 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTT-----CSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHh-----CCcceeeecccchhhhccCCccccEEEE
Confidence 566777764 32 3334445566 999999999988877543 34667788877521 12346787765
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=88.58 E-value=0.13 Score=33.81 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=53.6
Q ss_pred CcEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhh
Q 028547 49 QRILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 49 ~~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~ 126 (207)
.+|+-+|+|. | .++..|++.|+ +|+.++.++....... ... .+............+.....+|+|+..--
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~D~iii~vk---- 72 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVN--LVE-TDGSIFNESLTANDPDFLATSDLLLVTLK---- 72 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEE--EEC-TTSCEEEEEEEESCHHHHHTCSEEEECSC----
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhc--ccc-CCccccccccccchhhhhcccceEEEeec----
Confidence 3788899986 4 55566677777 9999987663111100 001 11111111111111112356899986421
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
..+....++.+...+.++..++...
T Consensus 73 ------a~~~~~~~~~l~~~~~~~~~Iv~~q 97 (167)
T d1ks9a2 73 ------AWQVSDAVKSLASTLPVTTPILLIH 97 (167)
T ss_dssp ------GGGHHHHHHHHHTTSCTTSCEEEEC
T ss_pred ------ccchHHHHHhhccccCcccEEeecc
Confidence 2456888999999999988776644
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.42 E-value=1.3 Score=29.95 Aligned_cols=39 Identities=31% Similarity=0.465 Sum_probs=29.6
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHH
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKK 89 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~ 89 (207)
+|--+|+|. | .++..+++.|+ +|+|+|++++.++...+.
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~g 42 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQG 42 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT
T ss_pred EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhccc
Confidence 566788885 3 45666777888 999999999988877643
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=88.18 E-value=1 Score=31.83 Aligned_cols=107 Identities=12% Similarity=0.187 Sum_probs=66.5
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCee
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++++|--|++.| ..+..+++.|+ +|+.+|.+++.++...+.+.. +..++.+|+.+.... .-+..|
T Consensus 6 gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD 82 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGE--RSMFVRHDVSSEADWTLVMAAVQRRLGTLN 82 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCT--TEEEECCCTTCHHHHHHHHHHHHHHHCSCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCC--CeEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence 347777777766 55666777887 899999999888887776643 567778888874211 135789
Q ss_pred EEEeCcchhhhc-cCCCChhhH-----------HHHHHHHHHhcC-CCcEEEEEE
Q 028547 116 SVVDKGTLDSLL-CGSNSRQNA-----------TQMLKEVWRVLK-DKGVYILVT 157 (207)
Q Consensus 116 ~v~~~~~l~~~~-~~~~~~~~~-----------~~~l~~~~~~L~-pgG~~~~~~ 157 (207)
+++.+.-..... ....+.+++ -.+.+.+.+.|+ .+|.++.+.
T Consensus 83 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~is 137 (253)
T d1hxha_ 83 VLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMA 137 (253)
T ss_dssp EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred eEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceeccc
Confidence 888875543221 111122222 233445556665 468777654
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=87.60 E-value=1.4 Score=29.07 Aligned_cols=100 Identities=10% Similarity=0.082 Sum_probs=57.3
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
.|-=||+|. +.++..|.+.|+ +|++.|.+++.++...++.... ....-.....+.. ..-...|.++..- .
T Consensus 4 nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-~~~~~a~~~~~~~-~~~~~~~~ii~~~--~--- 75 (176)
T d2pgda2 4 DIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAKG-TKVLGAHSLEEMV-SKLKKPRRIILLV--K--- 75 (176)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTTT-SSCEECSSHHHHH-HHBCSSCEEEECS--C---
T ss_pred cEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhcccc-ccccchhhhhhhh-hhhcccceEEEec--C---
Confidence 455677765 356667777788 9999999998888776653321 1111111222221 1123346666431 1
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
........+..+...+++|-+++-.+-..+
T Consensus 76 ----~~~~v~~v~~~l~~~~~~g~iiid~sT~~~ 105 (176)
T d2pgda2 76 ----AGQAVDNFIEKLVPLLDIGDIIIDGGNSEY 105 (176)
T ss_dssp ----TTHHHHHHHHHHHHHCCTTCEEEECSCCCH
T ss_pred ----chHHHHHHHHHHHhccccCcEEEecCcchh
Confidence 124556677888888888776665443333
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=87.45 E-value=1.9 Score=28.59 Aligned_cols=91 Identities=13% Similarity=0.155 Sum_probs=57.6
Q ss_pred cEEEEcC--CCchhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccc-cccCCCCeeEEEeCcchhhh
Q 028547 50 RILIVGC--GNSAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQM-DEFQTGSFDSVVDKGTLDSL 126 (207)
Q Consensus 50 ~vLdiG~--G~G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~fD~v~~~~~l~~~ 126 (207)
.||-.|+ |.|..+..+++....+|+++.-+++..+.+++.-.. .++..+-.+. .......+|.|+.. +
T Consensus 34 ~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad----~vi~~~~~~~~~~l~~~~~~~vvD~-----V 104 (177)
T d1o89a2 34 EIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGAS----RVLPRDEFAESRPLEKQVWAGAIDT-----V 104 (177)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEE----EEEEGGGSSSCCSSCCCCEEEEEES-----S
T ss_pred cEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccc----cccccccHHHHHHHHhhcCCeeEEE-----c
Confidence 6776664 346777888776334999998888888877664221 2232221211 22345668887642 1
Q ss_pred ccCCCChhhHHHHHHHHHHhcCCCcEEEEEEe
Q 028547 127 LCGSNSRQNATQMLKEVWRVLKDKGVYILVTY 158 (207)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 158 (207)
-...+....+.|+++|.++....
T Consensus 105 ---------gg~~~~~~l~~l~~~Griv~~G~ 127 (177)
T d1o89a2 105 ---------GDKVLAKVLAQMNYGGCVAACGL 127 (177)
T ss_dssp ---------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred ---------chHHHHHHHHHhccccceEeecc
Confidence 12357888999999999988653
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.65 E-value=1.3 Score=31.28 Aligned_cols=72 Identities=25% Similarity=0.380 Sum_probs=52.7
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCee
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++++|--|++.| ..+..+++.|+ +|+.+|.+++.++...+.. .+..++.+|+.+.... .-+..|
T Consensus 6 GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 81 (250)
T d1ydea1 6 GKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL---PGAVFILCDVTQEDDVKTLVSETIRRFGRLD 81 (250)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC---TTEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc---CCCeEEEccCCCHHHHHHHHHHHHHhcCCCC
Confidence 447888888777 55667777887 9999999999888877765 3578888998875211 125789
Q ss_pred EEEeCcch
Q 028547 116 SVVDKGTL 123 (207)
Q Consensus 116 ~v~~~~~l 123 (207)
+++.+.-.
T Consensus 82 ilVnnAG~ 89 (250)
T d1ydea1 82 CVVNNAGH 89 (250)
T ss_dssp EEEECCCC
T ss_pred EEEecccc
Confidence 98877543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=86.54 E-value=0.72 Score=32.74 Aligned_cols=76 Identities=12% Similarity=0.201 Sum_probs=54.1
Q ss_pred CCCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc---------C-CC
Q 028547 47 HHQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF---------Q-TG 112 (207)
Q Consensus 47 ~~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~---------~-~~ 112 (207)
.++++|--|++.| ..+..+++.|+ +|+.+|.+++.++.+.+.+.. ..++.++.+|+.+.... . ..
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~ 85 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG 85 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 3447888888777 45667777887 999999999988887776653 25678888998774211 1 23
Q ss_pred CeeEEEeCcch
Q 028547 113 SFDSVVDKGTL 123 (207)
Q Consensus 113 ~fD~v~~~~~l 123 (207)
..|+++.+.-.
T Consensus 86 ~idilvnnAG~ 96 (259)
T d2ae2a_ 86 KLNILVNNAGI 96 (259)
T ss_dssp CCCEEEECCCC
T ss_pred CceEEEECCce
Confidence 68999877443
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=86.49 E-value=1.1 Score=26.64 Aligned_cols=65 Identities=22% Similarity=0.364 Sum_probs=39.5
Q ss_pred CcEEEEcC-CCc--hhhHHHHhcCCCcEEEEeCCH-HHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcch
Q 028547 49 QRILIVGC-GNS--AFSEGMVDDGYEDVVNVDISS-VVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTL 123 (207)
Q Consensus 49 ~~vLdiG~-G~G--~~~~~l~~~~~~~v~~~D~s~-~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l 123 (207)
++|.=+|. |+| .++..+.+.|+ +|+|.|... ...+...+. .+.+......+. ....|+|+.+..+
T Consensus 9 ~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~-----Gi~v~~g~~~~~----i~~~d~vV~S~AI 77 (96)
T d1p3da1 9 QQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQA-----GAKIYIGHAEEH----IEGASVVVVSSAI 77 (96)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHT-----TCEEEESCCGGG----GTTCSEEEECTTS
T ss_pred CEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHC-----CCeEEECCcccc----CCCCCEEEECCCc
Confidence 37888875 455 66778888899 999999863 233333332 345544333322 2357888876544
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=85.51 E-value=1.5 Score=30.72 Aligned_cols=70 Identities=23% Similarity=0.314 Sum_probs=50.4
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCeeE
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFDS 116 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD~ 116 (207)
+++|--|++.| ..+..+++.|+ +|+.+|.+++.++.+.+.. +..++.+|+.+.... .-+..|+
T Consensus 6 K~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 80 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV----GAHPVVMDVADPASVERGFAEALAHLGRLDG 80 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT----TCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc----CCeEEEEecCCHHHHHHHHHHHHHhcCCceE
Confidence 47888888777 44566777787 9999999998888777654 567888998875211 1247898
Q ss_pred EEeCcch
Q 028547 117 VVDKGTL 123 (207)
Q Consensus 117 v~~~~~l 123 (207)
++.+.-.
T Consensus 81 lVnnAG~ 87 (242)
T d1ulsa_ 81 VVHYAGI 87 (242)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 8876443
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=85.25 E-value=1.1 Score=31.61 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=52.7
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCee
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++++|--|++.| ..+..+++.|+ +|+.+|.+++.++...+.+. .++.++.+|+.+.... .-+..|
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 81 (254)
T d1hdca_ 5 GKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELG--DAARYQHLDVTIEEDWQRVVAYAREEFGSVD 81 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTG--GGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC--CceEEEEcccCCHHHHHHHHHHHHHHcCCcc
Confidence 347888888887 55677777888 89999999988777766553 3678899999875211 125789
Q ss_pred EEEeCcch
Q 028547 116 SVVDKGTL 123 (207)
Q Consensus 116 ~v~~~~~l 123 (207)
+++.+..+
T Consensus 82 ilVnnAg~ 89 (254)
T d1hdca_ 82 GLVNNAGI 89 (254)
T ss_dssp EEEECCCC
T ss_pred EEEecCcc
Confidence 88876544
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.98 E-value=0.66 Score=31.44 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=64.3
Q ss_pred cEEEEcCCC--chhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC-------CCc---------------eE-EEeccc
Q 028547 50 RILIVGCGN--SAFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR-------PQL---------------KY-IKMDVR 104 (207)
Q Consensus 50 ~vLdiG~G~--G~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~-------~~~---------------~~-~~~d~~ 104 (207)
+|--||+|. ..++..++..|+ +|+.+|.+++.++.++++.... ... ++ ...|..
T Consensus 6 kvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~ 84 (192)
T d1f0ya2 6 HVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 84 (192)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence 788899986 345566677788 9999999999888777654310 000 01 111211
Q ss_pred cccccCCCCeeEEEeCcchhhhccCCCChhhHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 028547 105 QMDEFQTGSFDSVVDKGTLDSLLCGSNSRQNATQMLKEVWRVLKDKGVYILVTYGAP 161 (207)
Q Consensus 105 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 161 (207)
+ .....|+|+-. +.+ +.+-...+++++.+.++++.++.-.+.+-+
T Consensus 85 ~----a~~~ad~ViEa-v~E-------~l~~K~~v~~~l~~~~~~~~ilasnTS~l~ 129 (192)
T d1f0ya2 85 S----VVHSTDLVVEA-IVE-------NLKVKNELFKRLDKFAAEHTIFASNTSSLQ 129 (192)
T ss_dssp H----HTTSCSEEEEC-CCS-------CHHHHHHHHHHHTTTSCTTCEEEECCSSSC
T ss_pred h----hhcccceehhh-ccc-------chhHHHHHHHHHhhhcccCceeeccCcccc
Confidence 1 12356888864 233 337788999999999999988876664443
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=84.83 E-value=2.3 Score=29.81 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=48.0
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCee
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++++|--|++.| ..+..+++.|+ +|..+|.+++..+.+++. +..++.+|+.+.... .-++.|
T Consensus 5 GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD 78 (248)
T d2d1ya1 5 GKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAI-----GGAFFQVDLEDERERVRFVEEAAYALGRVD 78 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHH-----TCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-----CCeEEEEeCCCHHHHHHHHHHHHHhcCCCC
Confidence 347888887776 45567777887 999999988776655443 456788898875211 135789
Q ss_pred EEEeCcch
Q 028547 116 SVVDKGTL 123 (207)
Q Consensus 116 ~v~~~~~l 123 (207)
+++.+.-.
T Consensus 79 iLVnnAG~ 86 (248)
T d2d1ya1 79 VLVNNAAI 86 (248)
T ss_dssp EEEECCCC
T ss_pred eEEEeCcC
Confidence 88876443
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.16 E-value=1 Score=31.91 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=53.8
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC-CCCceEEEecccccccc----------CCCC
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN-RPQLKYIKMDVRQMDEF----------QTGS 113 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~-~~~~~~~~~d~~~~~~~----------~~~~ 113 (207)
++++|--|++.| ..+..+++.|+ +|+.++.+++.++.+.+.+.. ..++.++.+|+.+.... -.+.
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~ 86 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK 86 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCCC
Confidence 447888888777 46667777888 999999999888877766543 25788888998864211 1357
Q ss_pred eeEEEeCcch
Q 028547 114 FDSVVDKGTL 123 (207)
Q Consensus 114 fD~v~~~~~l 123 (207)
.|+++.+.-.
T Consensus 87 idilvnnAG~ 96 (259)
T d1xq1a_ 87 LDILINNLGA 96 (259)
T ss_dssp CSEEEEECCC
T ss_pred cccccccccc
Confidence 8988876444
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=84.10 E-value=3.6 Score=26.14 Aligned_cols=96 Identities=6% Similarity=0.012 Sum_probs=56.0
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc---ccCCCCeeEEEeCcchh
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~fD~v~~~~~l~ 124 (207)
+|+-+|+|. | .++..+.+.+. +++.+|.+++......+.... ..+.++.+|..+.. ...-+..|.|++...
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~-~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~-- 80 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG-DNADVIPGDSNDSSVLKKAGIDRCRAILALSD-- 80 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC-TTCEEEESCTTSHHHHHHHTTTTCSEEEECSS--
T ss_pred EEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhc-CCcEEEEccCcchHHHHHhccccCCEEEEccc--
Confidence 788888864 2 33334444556 899999988654333332222 36889999988852 224567788885311
Q ss_pred hhccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 125 SLLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
.+.....+-...+-+.|...++...
T Consensus 81 --------~d~~n~~~~~~~r~~~~~~~iia~~ 105 (153)
T d1id1a_ 81 --------NDADNAFVVLSAKDMSSDVKTVLAV 105 (153)
T ss_dssp --------CHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred --------cHHHHHHHHHHHHHhCCCCceEEEE
Confidence 1223333444556667776655543
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.87 E-value=1.3 Score=31.29 Aligned_cols=74 Identities=28% Similarity=0.374 Sum_probs=53.7
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCee
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++++|--|++.| ..+..+++.|+ +|+.+|.+++.++.+.+.+. .++.++.+|+.+.... .-+..|
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iD 81 (256)
T d1k2wa_ 5 GKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIG--PAACAIALDVTDQASIDRCVAELLDRWGSID 81 (256)
T ss_dssp TEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC--CceEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 347888888777 55667777887 99999999988888777664 3678889999875211 125789
Q ss_pred EEEeCcchh
Q 028547 116 SVVDKGTLD 124 (207)
Q Consensus 116 ~v~~~~~l~ 124 (207)
+++.+.-..
T Consensus 82 ilVnnAg~~ 90 (256)
T d1k2wa_ 82 ILVNNAALF 90 (256)
T ss_dssp EEEECCCCC
T ss_pred EEEeecccc
Confidence 988875543
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.86 E-value=1.1 Score=31.99 Aligned_cols=74 Identities=22% Similarity=0.264 Sum_probs=53.1
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----CCceEEEecccccccc---------CC
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVRQMDEF---------QT 111 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d~~~~~~~---------~~ 111 (207)
++++|--|++.| ..+..+++.|+ +|+.+|.+++.++.+.+.+... .++.++.+|+.+.... .-
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 83 (272)
T d1xkqa_ 5 NKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF 83 (272)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 347777887776 55667777887 9999999999888887766432 3578889998875211 12
Q ss_pred CCeeEEEeCcc
Q 028547 112 GSFDSVVDKGT 122 (207)
Q Consensus 112 ~~fD~v~~~~~ 122 (207)
+..|+++.+.-
T Consensus 84 g~iDilvnnAG 94 (272)
T d1xkqa_ 84 GKIDVLVNNAG 94 (272)
T ss_dssp SCCCEEEECCC
T ss_pred CCceEEEeCCc
Confidence 57899887643
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=83.60 E-value=3.4 Score=25.45 Aligned_cols=91 Identities=11% Similarity=0.073 Sum_probs=57.7
Q ss_pred cEEEEcCCCchhhHHHHhcCC-CcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccc---ccCCCCeeEEEeCcchhh
Q 028547 50 RILIVGCGNSAFSEGMVDDGY-EDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMD---EFQTGSFDSVVDKGTLDS 125 (207)
Q Consensus 50 ~vLdiG~G~G~~~~~l~~~~~-~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~fD~v~~~~~l~~ 125 (207)
.|+-+| .|..+..+++.-. ..++.+|.+++..+..+.. .+.++.+|..+.. ...-+..+.+++..
T Consensus 2 HivI~G--~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-----~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~---- 70 (129)
T d2fy8a1 2 HVVICG--WSESTLECLRELRGSEVFVLAEDENVRKKVLRS-----GANFVHGDPTRVSDLEKANVRGARAVIVNL---- 70 (129)
T ss_dssp CEEEES--CCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-----TCEEEESCTTSHHHHHHTTCTTCSEEEECC----
T ss_pred EEEEEC--CCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-----CccccccccCCHHHHHHhhhhcCcEEEEec----
Confidence 355554 5667777777532 3889999999887776543 6789999988752 12455677777531
Q ss_pred hccCCCChhhHHHHHHHHHHhcCCCcEEEEEE
Q 028547 126 LLCGSNSRQNATQMLKEVWRVLKDKGVYILVT 157 (207)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 157 (207)
+.+.....+-...+.+.|...++...
T Consensus 71 ------~~d~~n~~~~~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 71 ------ESDSETIHCILGIRKIDESVRIIAEA 96 (129)
T ss_dssp ------SSHHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred ------cchhhhHHHHHHHHHHCCCceEEEEE
Confidence 11333344445567778877666544
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=83.18 E-value=1.6 Score=31.17 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=51.3
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEecccccccc---------CCCCee
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF---------QTGSFD 115 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~---------~~~~fD 115 (207)
++++|--|++.| ..+..+++.|+ +|+.+|.+++.++...+... .++.++.+|+.+.... .-+..|
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id 81 (276)
T d1bdba_ 5 GEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHG--DNVLGIVGDVRSLEDQKQAASRCVARFGKID 81 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC--CCeeEEecccccHHHHHHHHHHHHHHhCCcc
Confidence 347888888776 45566777787 99999999988877766654 3677888888875211 135789
Q ss_pred EEEeCcc
Q 028547 116 SVVDKGT 122 (207)
Q Consensus 116 ~v~~~~~ 122 (207)
+++.+..
T Consensus 82 ilvnnAG 88 (276)
T d1bdba_ 82 TLIPNAG 88 (276)
T ss_dssp EEECCCC
T ss_pred ccccccc
Confidence 8887644
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=83.10 E-value=4.4 Score=26.45 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=45.1
Q ss_pred CCCcEEEEcCCCc-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchh
Q 028547 47 HHQRILIVGCGNS-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLD 124 (207)
Q Consensus 47 ~~~~vLdiG~G~G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 124 (207)
.+++||-+|+|.. .-....+..+..+++.+.-+.+..+...+++....++.....+ +. ....+|+|+..-++.
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~--~~---~~~~~diiIN~tp~g 90 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMD--SI---PLQTYDLVINATSAG 90 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG--GC---CCSCCSEEEECCCC-
T ss_pred CCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhc--cc---cccccceeeeccccc
Confidence 4459999999754 3333333345569999999988777777766543333333333 22 346799999865444
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=82.91 E-value=0.84 Score=32.34 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=50.4
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEecccccccc---------CCCC
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
++++|--|++.| ..+..+++.|+ +|+.+|.+++.++.+.+.... ..++.++.+|+.+.... .-+.
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 87 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP 87 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 347888887776 45667777887 899999887665554443321 24678889999875211 2467
Q ss_pred eeEEEeCcch
Q 028547 114 FDSVVDKGTL 123 (207)
Q Consensus 114 fD~v~~~~~l 123 (207)
.|+++.+...
T Consensus 88 iDilVnnAg~ 97 (260)
T d1h5qa_ 88 ISGLIANAGV 97 (260)
T ss_dssp EEEEEECCCC
T ss_pred CcEecccccc
Confidence 9988876543
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=82.71 E-value=0.63 Score=33.77 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=41.2
Q ss_pred cEEEEcCCCchhh----HHHHhcCCCcEEEEe-CCHHHHHHHHHHccCCCCceEEEecccccccc----CCCCeeEEEeC
Q 028547 50 RILIVGCGNSAFS----EGMVDDGYEDVVNVD-ISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEF----QTGSFDSVVDK 120 (207)
Q Consensus 50 ~vLdiG~G~G~~~----~~l~~~~~~~v~~~D-~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~fD~v~~~ 120 (207)
+||-.| |+|.++ ..|.+.|+ +|+++| ++...............++.++.+|+.+...+ ...++|.|+..
T Consensus 2 KILVTG-atGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~ 79 (338)
T d1orra_ 2 KLLITG-GCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL 79 (338)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred EEEEEC-CCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEee
Confidence 566444 566544 44555677 999998 33322222222222336899999999875222 23357988865
Q ss_pred cch
Q 028547 121 GTL 123 (207)
Q Consensus 121 ~~l 123 (207)
...
T Consensus 80 aa~ 82 (338)
T d1orra_ 80 AGQ 82 (338)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=82.48 E-value=4.2 Score=25.80 Aligned_cols=86 Identities=16% Similarity=0.263 Sum_probs=51.4
Q ss_pred cEEEEcCCC-c-hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCCCCceEEEeccccccccCCCCeeEEEeCcchhhhc
Q 028547 50 RILIVGCGN-S-AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNRPQLKYIKMDVRQMDEFQTGSFDSVVDKGTLDSLL 127 (207)
Q Consensus 50 ~vLdiG~G~-G-~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~ 127 (207)
+|.=||||. | .++..+.+.+..+++..|.+++.++...++. .+... .+.... ...|+|+.. +
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~----~~~~~-~~~~~v-----~~~Div~la-----v- 65 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL----GVETS-ATLPEL-----HSDDVLILA-----V- 65 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT----CCEEE-SSCCCC-----CTTSEEEEC-----S-
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc----ccccc-cccccc-----cccceEEEe-----c-
Confidence 567788876 3 3444455556459999999998888877654 22222 222222 246888843 1
Q ss_pred cCCCChhhHHHHHHHHHHhcCCCcEEEEEEeC
Q 028547 128 CGSNSRQNATQMLKEVWRVLKDKGVYILVTYG 159 (207)
Q Consensus 128 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 159 (207)
.+..+..+.+-+++.+.++++...
T Consensus 66 --------kP~~~~~v~~~l~~~~~~viS~~a 89 (152)
T d1yqga2 66 --------KPQDMEAACKNIRTNGALVLSVAA 89 (152)
T ss_dssp --------CHHHHHHHHTTCCCTTCEEEECCT
T ss_pred --------CHHHHHHhHHHHhhcccEEeeccc
Confidence 123355566667777777766543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=82.30 E-value=1.3 Score=31.13 Aligned_cols=75 Identities=19% Similarity=0.323 Sum_probs=52.2
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEecccccccc---------CCCC
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEF---------QTGS 113 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~---------~~~~ 113 (207)
++++|--|++.| ..+..+++.|+ +|..+|.+++.++.+.+.+.. ..++.++.+|+.+.... .-+.
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 83 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK 83 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 347888888877 45667778888 999999998877766554321 24677888998874211 1257
Q ss_pred eeEEEeCcch
Q 028547 114 FDSVVDKGTL 123 (207)
Q Consensus 114 fD~v~~~~~l 123 (207)
.|+++.+.-+
T Consensus 84 iDiLVnnAG~ 93 (251)
T d1vl8a_ 84 LDTVVNAAGI 93 (251)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999877543
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=82.29 E-value=2.4 Score=29.88 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=52.8
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHcc---CCCCceEEEecccccccc---------CCC
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYS---NRPQLKYIKMDVRQMDEF---------QTG 112 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~---~~~~~~~~~~d~~~~~~~---------~~~ 112 (207)
++++|--|++.| ..+..+++.|+ +|..+|.+++.++.+.+... ...++.++.+|+.+.... .-+
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 82 (258)
T d1iy8a_ 4 DRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG 82 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 347788888877 46677888888 99999999988877665543 224677888998875211 125
Q ss_pred CeeEEEeCcc
Q 028547 113 SFDSVVDKGT 122 (207)
Q Consensus 113 ~fD~v~~~~~ 122 (207)
..|+++.+.-
T Consensus 83 ~iDiLVnnAG 92 (258)
T d1iy8a_ 83 RIDGFFNNAG 92 (258)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCc
Confidence 7899887654
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=81.35 E-value=1.4 Score=31.60 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=52.1
Q ss_pred CcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC--CCCceEEEecccccccc---------CCCCe
Q 028547 49 QRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN--RPQLKYIKMDVRQMDEF---------QTGSF 114 (207)
Q Consensus 49 ~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~--~~~~~~~~~d~~~~~~~---------~~~~f 114 (207)
+++|--|+..| ..+..+++.|+ +|+.+|.++..++...+.+.. ..++.++.+|+.+.... ..+..
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 104 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGHP 104 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhcccc
Confidence 47888888777 56667777887 999999999877766554431 24677888888875211 24678
Q ss_pred eEEEeCcch
Q 028547 115 DSVVDKGTL 123 (207)
Q Consensus 115 D~v~~~~~l 123 (207)
|+++.+...
T Consensus 105 DilvnnAg~ 113 (294)
T d1w6ua_ 105 NIVINNAAG 113 (294)
T ss_dssp SEEEECCCC
T ss_pred chhhhhhhh
Confidence 988876443
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=80.49 E-value=3.5 Score=28.55 Aligned_cols=74 Identities=18% Similarity=0.281 Sum_probs=50.4
Q ss_pred cEEEEcCCCc---hhhHHHHhcCCC------cEEEEeCCHHHHHHHHHHccCC-CCceEEEecccccccc---------C
Q 028547 50 RILIVGCGNS---AFSEGMVDDGYE------DVVNVDISSVVIEAMMKKYSNR-PQLKYIKMDVRQMDEF---------Q 110 (207)
Q Consensus 50 ~vLdiG~G~G---~~~~~l~~~~~~------~v~~~D~s~~~i~~~~~~~~~~-~~~~~~~~d~~~~~~~---------~ 110 (207)
.||--|++.| ..+..+++.|+. .++.++.+++.++...+.+... .++.++.+|+.+.... .
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER 82 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 3566677776 345566777762 2889999998888877765533 4677888999885211 2
Q ss_pred CCCeeEEEeCcch
Q 028547 111 TGSFDSVVDKGTL 123 (207)
Q Consensus 111 ~~~fD~v~~~~~l 123 (207)
-+..|+++.+...
T Consensus 83 ~g~iDilvnnAg~ 95 (240)
T d2bd0a1 83 YGHIDCLVNNAGV 95 (240)
T ss_dssp TSCCSEEEECCCC
T ss_pred cCCcceeeccccc
Confidence 3578998877544
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=80.11 E-value=1.3 Score=31.52 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=52.4
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccCC----CCceEEEecccccccc---------CC
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSNR----PQLKYIKMDVRQMDEF---------QT 111 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~~----~~~~~~~~d~~~~~~~---------~~ 111 (207)
++++|--|++.| ..+..+++.|+ +|+.+|.+++.++.+.+.+... .++.++.+|+.+.... .-
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (274)
T d1xhla_ 4 GKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF 82 (274)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 347777887777 45667777887 9999999998888777665421 3578899998875211 12
Q ss_pred CCeeEEEeCcc
Q 028547 112 GSFDSVVDKGT 122 (207)
Q Consensus 112 ~~fD~v~~~~~ 122 (207)
+..|+++.+.-
T Consensus 83 G~iDilVnnAG 93 (274)
T d1xhla_ 83 GKIDILVNNAG 93 (274)
T ss_dssp SCCCEEEECCC
T ss_pred CCceEEEeecc
Confidence 47899987643
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=80.05 E-value=1.9 Score=30.46 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=51.2
Q ss_pred CCcEEEEcCCCc---hhhHHHHhcCCCcEEEEeCCHHHHHHHHHHccC----CCCceEEEecccccccc---------CC
Q 028547 48 HQRILIVGCGNS---AFSEGMVDDGYEDVVNVDISSVVIEAMMKKYSN----RPQLKYIKMDVRQMDEF---------QT 111 (207)
Q Consensus 48 ~~~vLdiG~G~G---~~~~~l~~~~~~~v~~~D~s~~~i~~~~~~~~~----~~~~~~~~~d~~~~~~~---------~~ 111 (207)
++.+|--|++.| ..+..+++.|+ +|..+|.+++.++.+.+.+.. ..++.++.+|+.+.... .-
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (264)
T d1spxa_ 5 EKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF 83 (264)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 336677777766 45566777787 999999999888877765532 13578899999875211 12
Q ss_pred CCeeEEEeCcc
Q 028547 112 GSFDSVVDKGT 122 (207)
Q Consensus 112 ~~fD~v~~~~~ 122 (207)
+..|+++.+.-
T Consensus 84 g~iDilvnnAG 94 (264)
T d1spxa_ 84 GKLDILVNNAG 94 (264)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEeecccc
Confidence 57898887643
|