Citrus Sinensis ID: 028566

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MISHLHHHQYHGSSSSNKNDGLVISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTATSSVKAESVSDNYKNNNNINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPHRIGSDEPPPVRVTAKRSHSVDSAAAAKRRKDSAAAKEHQLTMLPAGEHLLVN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHcccHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEccEEEcccccEEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccHHHccccccccccccHccccccHHHHHHHccccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
mishlhhhqyhgssssnkndglVISSCltenwgdlplrvndsedMIIFNYLYDavnsgwspldstatssvkaesvsdnyknnnninnqkmcrggrhyrgvrqrpwgkfaaeirdpakngarvwLGTYETAEEAALAYDRAafdirgskallnfphrigsdepppvrvtakrshsvdSAAAAKRRKDSAAAKEhqltmlpagehllvn
Flexible Loop (DISEMBL)
mishlhhhqyhgssssnkndGLVISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTATSSVKaesvsdnyknnnninnqkmcrggrHYRGVRQRPWGKFaaeirdpakngaRVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPhrigsdepppvrvtakrshsvdsaaaAKRRKDSAAAKehqltmlpagehllvn
Low Complexity Region (SEG)
MISHLHHHQYHGSSSSNKNDGLVISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTATSSVKAESVSDnyknnnninnQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGtyetaeeaalaydraaFDIRGSKALLNFPHRIGSDEPPPVRVTAKRSHSVdsaaaakrrkdsaaaKEHQLTMLPAGEHLLVN
Disordered region (IsUnstruct)
********************GLVISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWS******************************CRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPH****************************************************
Disordered Region (DISOPRED)
MISHLHH*******************CLTENWGDLPLRVNDSEDMIIFNY*************************************************VRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPHR*********************************************E*LL**
Disordered Region (DISEMBL)
*****************KNDGLVISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSP************SVSDNYKNNNNINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPHRIGSDEPPP***************************EHQLTMLPAGEHLLVN
Disordered Region (DISPRO)
***************S*K**GLVISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVN**************************************RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPHRIGSD***********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISHLHHHQYHGSSSSNKNDGLVISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTATSSVKAESVSDNYKNNNNINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPHRIGSDEPPPVRVTAKRSHSVDSAAAAKRRKDSAAAKEHQLTMLPAGEHLLVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q40479	233	Ethylene-responsive trans	N/A	no	0.884	0.785	0.532	2e-57
Q9LW50	237	Ethylene-responsive trans	N/A	no	0.927	0.810	0.495	1e-55
Q40476	236	Ethylene-responsive trans	N/A	no	0.859	0.754	0.550	2e-52
Q84XB3	244	Ethylene-responsive trans	N/A	no	0.874	0.741	0.532	3e-52
O80337	268	Ethylene-responsive trans	yes	no	0.869	0.671	0.482	2e-45
O80338	243	Ethylene-responsive trans	no	no	0.710	0.604	0.577	1e-43
Q8L9K1	226	Ethylene-responsive trans	no	no	0.681	0.623	0.586	4e-42
O04681	161	Pathogenesis-related gene	N/A	no	0.531	0.683	0.531	2e-28
Q8LDC8	218	Ethylene-responsive trans	no	no	0.657	0.623	0.426	3e-25
O80341	300	Ethylene-responsive trans	no	no	0.328	0.226	0.735	2e-24

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  221 bits (564), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 141/218 (64%), Gaps = 35/218 (16%)

Query: 24  ISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTATSSVKAES--------- 74
           +  CLT+ WGDLPL+V+DSEDM+I+  L DA+ +GW+P + T+T  +KAE          
Sbjct: 17  LMPCLTDTWGDLPLKVDDSEDMVIYGLLSDALTAGWTPFNLTSTE-IKAEPREEIEPATI 75

Query: 75  -VSDNYKNNNNINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEA 133
            V            Q +   GRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEA
Sbjct: 76  PVPSVAPPAETTTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEA 135

Query: 134 ALAYDRAAFDIRGSKALLNFPHRIGSDEPPPVRVTAKR------SHSVDSA---AAAKRR 184
           ALAYD+AA+ +RGSKALLNFPHRIG +EP PVR+TAKR      S S+ SA    + KRR
Sbjct: 136 ALAYDKAAYRMRGSKALLNFPHRIGLNEPEPVRLTAKRRSPEPASSSISSALENGSPKRR 195

Query: 185 KDSAAAKEH---------------QLTMLPAGEHLLVN 207
           + + AAK+                Q+   P GE LLV+
Sbjct: 196 RKAVAAKKAELEVQSRSNAMQVGCQMEQFPVGEQLLVS 233

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.
Nicotiana tabacum (taxid: 4097)

>sp|Q9LW50|ERF2_NICSY Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1

 Score =  216 bits (549), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/232 (49%), Positives = 141/232 (60%), Gaps = 40/232 (17%)

Query: 10  YHGSSSSNKNDGLVISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTATSS 69
           YH +SS +      +  CLT+ WGDLPL+V+DSEDM+I+  L DA+ +GW+P + T+T  
Sbjct: 12  YHRTSSFSS-----LMPCLTDTWGDLPLKVDDSEDMVIYGLLSDALTTGWTPFNLTSTE- 65

Query: 70  VKAES----------VSDNYKNNNNINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNG 119
           +KAE           V            Q +   GRHYRGVRQRPWGKFAAEIRDPAKNG
Sbjct: 66  IKAEPREEIEPATSPVPSVAPPAETTTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNG 125

Query: 120 ARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPHRIGSDEPPPVRVTAKR-------- 171
           ARVWLGTYETAEEAALAYD+AA+ +RGSKALLNFPHRIG +EP PVR+T KR        
Sbjct: 126 ARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLNEPEPVRLTVKRRSPEPASS 185

Query: 172 -SHSVDSAAAAKRRKDSAAAKEH---------------QLTMLPAGEHLLVN 207
                   +  KRR+ + AAK+                Q+   P GE LLV+
Sbjct: 186 SISPASENSLPKRRRKAVAAKQAELEVQSRSNVMQVGCQMEQFPVGEQLLVS 237

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|Q40476|ERF1_TOBAC Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/187 (55%), Positives = 134/187 (71%), Gaps = 9/187 (4%)

Query: 27  CLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTA---TSSVKAESVSDNYKNNN 83
           CLTE WGDLPL+V+DSEDM+I+  L DA+N GWSP + +A    S  + E +  +     
Sbjct: 33  CLTETWGDLPLKVDDSEDMVIYTLLKDALNVGWSPFNFSAGEVKSEQREEEIVVSPAETT 92

Query: 84  NINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFD 143
                ++ RG RHYRGVR+RPWGKFAAEIRDPAKNGARVWLGTYET EEAA+AYD+AA+ 
Sbjct: 93  AAPAAELPRG-RHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYR 151

Query: 144 IRGSKALLNFPHRIGSDEPPPVRVTAKRSHSVDSAAAA-----KRRKDSAAAKEHQLTML 198
           +RGSKA LNFPHRIG +EP PVRVTAKR  S + A+++     KRR+ + A ++ +   +
Sbjct: 152 MRGSKAHLNFPHRIGLNEPEPVRVTAKRRASPEPASSSENSSPKRRRKAVATEKSEAVEV 211

Query: 199 PAGEHLL 205
            +  ++L
Sbjct: 212 ESKSNVL 218

Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q84XB3|ERF1_SOLLC Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1

 Score =  204 bits (520), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/197 (53%), Positives = 133/197 (67%), Gaps = 16/197 (8%)

Query: 24  ISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTATSSVKAESVSD------ 77
           +  CLTE+WGDLPL+VNDSEDM+I+ +L DA + GW+P + T +  VK E   +      
Sbjct: 29  LMPCLTESWGDLPLKVNDSEDMVIYGFLQDAFSIGWTPSNLT-SEEVKLEPREEIEPAMS 87

Query: 78  NYKNNNNINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAY 137
              +   +    +   GRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYE+AEEAALAY
Sbjct: 88  TSVSPPTVAPAALQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAY 147

Query: 138 DRAAFDIRGSKALLNFPHRIGSDEPPPVRVTAKR---------SHSVDSAAAAKRRKDSA 188
            +AAF +RG+KALLNFPHRIG +EP PVRVT KR           S   + + KRR+   
Sbjct: 148 GKAAFRMRGTKALLNFPHRIGLNEPEPVRVTVKRRLSESASSSVSSASESGSPKRRRKGV 207

Query: 189 AAKEHQLTMLPAGEHLL 205
           AAK+ +L +   G +++
Sbjct: 208 AAKQAELEVESRGPNVM 224

Involved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways.

Solanum lycopersicum (taxid: 4081)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  182 bits (461), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/205 (48%), Positives = 125/205 (60%), Gaps = 25/205 (12%)

Query: 27  CLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLD---------------STATSSVK 71
           C TE+WGDLPL+ NDSEDM+++  L DA + GW P                  T  S   
Sbjct: 63  CFTESWGDLPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPESFAA 122

Query: 72  AESVSDNYKNNNNINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAE 131
            +SV    +  + ++       G+HYRGVRQRPWGKFAAEIRDPAKNGARVWLGT+ETAE
Sbjct: 123 VDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAE 182

Query: 132 EAALAYDRAAFDIRGSKALLNFPHRIGSDEPPPVRVTAKRSHSV---DSAAAAKRRK--- 185
           +AALAYDRAAF +RGS+ALLNFP R+ S EP PVR+ +KRS      ++ A  KRR    
Sbjct: 183 DAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKRSSFSSSNENGAPKKRRTVAA 242

Query: 186 ----DSAAAKEHQLTMLPAGEHLLV 206
               D     + ++  +  G+ LLV
Sbjct: 243 GGGMDKGLTVKCEVVEVARGDRLLV 267

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  176 bits (446), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/154 (57%), Positives = 108/154 (70%), Gaps = 7/154 (4%)

Query: 25  SSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTATSSVKAESV--SDNY--- 79
           SSC TE+WG LPL+ NDSEDM+++  L DA +   S  D +      A  V  ++N+   
Sbjct: 38  SSCFTESWGGLPLKENDSEDMLVYGLLKDAFHFDTSSSDLSCLFDFPAVKVEPTENFTAM 97

Query: 80  --KNNNNINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAY 137
             K    I   +     +HYRGVRQRPWGKFAAEIRDPAKNGARVWLGT+ETAE+AALAY
Sbjct: 98  EEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAY 157

Query: 138 DRAAFDIRGSKALLNFPHRIGSDEPPPVRVTAKR 171
           D AAF +RGS+ALLNFP R+ S EP PVR+T+KR
Sbjct: 158 DIAAFRMRGSRALLNFPLRVNSGEPDPVRITSKR 191

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9K1|ERF99_ARATH Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2

 Score =  171 bits (432), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 85/145 (58%), Positives = 102/145 (70%), Gaps = 4/145 (2%)

Query: 27  CLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTATSSVKAESVSDNYKNNNNIN 86
            L +NW DLPL V+DS+DM I+N L DAV+SGW+P     TS  +         + ++  
Sbjct: 26  ILNDNWSDLPLSVDDSQDMAIYNTLRDAVSSGWTPSVPPVTSPAEENKPPATKASGSHAP 85

Query: 87  NQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRG 146
            QK    G  YRGVR+RPWGKFAAEIRDP KNGARVWLGTYET E+AA+AYDRAAF +RG
Sbjct: 86  RQK----GMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRG 141

Query: 147 SKALLNFPHRIGSDEPPPVRVTAKR 171
           SKA LNFPH IGS +  PVR+  +R
Sbjct: 142 SKAKLNFPHLIGSCKYEPVRIRPRR 166

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/126 (53%), Positives = 84/126 (66%), Gaps = 16/126 (12%)

Query: 34  DLPLRVNDSEDMIIFNYLYDA--VNSGWSPLDSTATSSVKAESVSDNYKNNNNINNQKMC 91
           DLPL  NDS++M+++  L +A  +N  + P  +                  NNI     C
Sbjct: 8   DLPLNENDSQEMVLYEVLNEANALNIPYLPQRNQLLP-------------RNNILRPLQC 54

Query: 92  RGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALL 151
             G+ YRGVR+RPWGK+AAEIRD A++GARVWLGT+ETAEEAALAYDRAAF +RG+KALL
Sbjct: 55  -IGKKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALL 113

Query: 152 NFPHRI 157
           NFP  I
Sbjct: 114 NFPSEI 119

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.

Solanum lycopersicum (taxid: 4081)

>sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=1 SV=2

 Score =  114 bits (286), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 90/164 (54%), Gaps = 28/164 (17%)

Query: 35  LPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTATSSVKAESVSDNYKNNNNINNQKMCRGG 94
           LP   NDSE+M ++  +  +    +   DS     +  +SVS               +  
Sbjct: 36  LPFNENDSEEMFLYGLIEQSTQQTYIDSDS---QDLPIKSVSSR-------------KSE 79

Query: 95  RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNF- 153
           + YRGVR+RPWGKFAAEIRD  +NG RVWLGT+E+AEEAALAYD+AAF +RGS A+LNF 
Sbjct: 80  KSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFS 139

Query: 154 PHRIG----------SDEPPPVRVTAKRSHSVDSAAAAKRRKDS 187
             R+            D   PV V  KR HS+      K+ KDS
Sbjct: 140 AERVQESLSEIKYTYEDGCSPV-VALKRKHSMRRRMTNKKTKDS 182

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression during the plant development, and/or mediated by stress factors and by components of stress signal transduction pathways. Seems to be a key integrator of ethylene and jasmonate signals in the regulation of ethylene/jasmonate-dependent defenses. Can mediate resistance to necrotizing fungi (Botrytis cinerea and Plectosphaerella cucumerina) and to soil borne fungi (Fusarium oxysporum conglutinans and Fusiarium oxysporum lycopersici), but probably not to necrotizing bacteria (Pseudomonas syringae tomato).

Arabidopsis thaliana (taxid: 3702)

>sp|O80341|EF102_ARATH Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 58/68 (85%)

Query: 95  RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFP 154
           +HYRGVRQRPWGKFAAEIRDP K G+RVWLGT++TA EAA AYD AAF +RGSKA+LNFP
Sbjct: 154 KHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFP 213

Query: 155 HRIGSDEP 162
             +G  +P
Sbjct: 214 LEVGKWKP 221

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
297375531	207	putative ethylene-responsive element bin	1.0	1.0	0.995	1e-118
255539897	256	Ethylene-responsive transcription factor	0.927	0.75	0.519	1e-57
300079020	248	ethylene response factor 12 [Actinidia d	0.956	0.798	0.510	2e-57
224075319	267	AP2/ERF domain-containing transcription	0.971	0.752	0.524	2e-56
224053681	262	AP2/ERF domain-containing transcription	0.961	0.759	0.496	6e-56
57012759	233	RecName: Full=Ethylene-responsive transc	0.884	0.785	0.532	1e-55
376372998	265	ERF8 [Gossypium hirsutum]	0.975	0.762	0.452	6e-55
57012876	237	RecName: Full=Ethylene-responsive transc	0.927	0.810	0.495	6e-54
319992789	233	ethylene response factor 2.2 [Bupleurum	0.884	0.785	0.523	3e-53
145077169	247	ERF transcription factor [Solanum tubero	0.884	0.740	0.527	4e-53

>gi|297375531|gb|ADI34108.1| putative ethylene-responsive element binding protein [Citrus unshiu]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/207 (99%), Positives = 207/207 (100%)

Query: 1   MISHLHHHQYHGSSSSNKNDGLVISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWS 60
           MISHLHHHQYHGSSSSNKNDGLVISSCLTENWGDLPLRVNDSEDMIIFNYL+DAVNSGWS
Sbjct: 1   MISHLHHHQYHGSSSSNKNDGLVISSCLTENWGDLPLRVNDSEDMIIFNYLHDAVNSGWS 60

Query: 61  PLDSTATSSVKAESVSDNYKNNNNINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGA 120
           PLDSTATSSVKAESVSDNYKNNNNINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGA
Sbjct: 61  PLDSTATSSVKAESVSDNYKNNNNINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGA 120

Query: 121 RVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPHRIGSDEPPPVRVTAKRSHSVDSAAA 180
           RVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPHRIGSDEPPPVRVTAKRSHSVDSAAA
Sbjct: 121 RVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPHRIGSDEPPPVRVTAKRSHSVDSAAA 180

Query: 181 AKRRKDSAAAKEHQLTMLPAGEHLLVN 207
           AKRRKDSAAAKEHQLTMLPAGEHLLVN
Sbjct: 181 AKRRKDSAAAKEHQLTMLPAGEHLLVN 207

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539897|ref|XP_002511013.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223550128|gb|EEF51615.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/252 (51%), Positives = 158/252 (62%), Gaps = 60/252 (23%)

Query: 7   HHQYHGSSSSNKNDGLVISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLD--- 63
           HHQY  +SS        +  CLTENWGDLPL+V+DSEDM+I+N+L DAV+SGWSPLD   
Sbjct: 14  HHQYPRTSSYTS-----LFPCLTENWGDLPLKVDDSEDMVIYNFLRDAVSSGWSPLDFIT 68

Query: 64  -----------------------------STATSSVKAESVSDNYKNNNNIN-----NQK 89
                                        +TA++ +  ++ S   K   +I+     N K
Sbjct: 69  TTTTAAAVKAEPTDDLELPTTPARFLTQETTASNILLLQTTSPENKETVSIDLVQKQNNK 128

Query: 90  MCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKA 149
           + +G RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYD AAF +RGS+A
Sbjct: 129 VAKG-RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDIAAFRMRGSRA 187

Query: 150 LLNFPHRIGSDEPPPVRVTAKRSHS--VDSAAAAKRRKDSAAAKE------------HQL 195
           LLNFPHR+GS  P PVRVTAKR  S     + +AKRRK S AA E            H++
Sbjct: 188 LLNFPHRVGS--PEPVRVTAKRRESEMAPGSGSAKRRK-SLAANEGYETGTVALQVGHKI 244

Query: 196 TMLPAGEHLLVN 207
            M+P GE LLV+
Sbjct: 245 EMMPVGEQLLVS 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300079020|gb|ADJ67441.1| ethylene response factor 12 [Actinidia deliciosa]

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 123/241 (51%), Positives = 154/241 (63%), Gaps = 43/241 (17%)

Query: 3   SHLHHHQYHGSSSSNKNDGLVISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPL 62
           S      YH SSS +      +  CLTE WGDLPL+V+DSEDM+I+  L DAV++GW+P 
Sbjct: 15  SSFEFPVYHRSSSFSS-----LIPCLTETWGDLPLKVDDSEDMVIYGLLRDAVSAGWTPF 69

Query: 63  DSTATSSVKAESVSDNYKNNNNINNQKMCRG---------------GRHYRGVRQRPWGK 107
           + TA + VK E + D ++     +  ++                  GRH+RGVRQRPWGK
Sbjct: 70  NLTA-NDVKPEPI-DEFEPATTTSAAQLVESPVTEVQTIAAAARPKGRHFRGVRQRPWGK 127

Query: 108 FAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPHRIGSDEPPPVRV 167
           FAAEIRDPAKNGARVWLGTYETAEEAA+AYD+AA+ +RGS+ALLNFPHRIGSDEP PVRV
Sbjct: 128 FAAEIRDPAKNGARVWLGTYETAEEAAVAYDKAAYRMRGSRALLNFPHRIGSDEPEPVRV 187

Query: 168 TAKR------SHSVDSAAAAKRRKDSAAAKEHQLTM---------------LPAGEHLLV 206
           T+KR      S S +S +  +RRK  AAAK+ +L +               LP GE LLV
Sbjct: 188 TSKRRSPEPTSPSSESGSPKRRRKGFAAAKQAELGVERESSVCQVGCQVRQLPVGEQLLV 247

Query: 207 N 207
           +
Sbjct: 248 S 248

Source: Actinidia deliciosa

Species: Actinidia deliciosa

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075319|ref|XP_002304592.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222842024|gb|EEE79571.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/248 (52%), Positives = 152/248 (61%), Gaps = 47/248 (18%)

Query: 2   ISHLHHHQYHGSSSSNKNDGLVISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSP 61
            S L HH+ H S S +      + SCLTE WGDLPLRV+DSEDM+I+N L DAV  GWSP
Sbjct: 10  FSTLSHHRQHRSPSFSS-----LISCLTETWGDLPLRVDDSEDMVIYNSLRDAVRFGWSP 64

Query: 62  LD-------------STATSSVKAE------------SVSDNYKNNNNINNQKMCRGGRH 96
           LD             +  TS VKAE             +      N    ++K+   GRH
Sbjct: 65  LDLTSPTATTATATITRTTSVVKAEPGYEPEPEAEPMKLVQEAGLNEAAVSKKVVAKGRH 124

Query: 97  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPHR 156
           YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEA LAYDRAA+ +RGSKALLNFPH+
Sbjct: 125 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAGLAYDRAAYRMRGSKALLNFPHK 184

Query: 157 IGSDEPPPVRVTAKRSH------SVDSAAAAKRR---------KDSAAAKEHQLT--MLP 199
           IGS+EP PVRVT KR        +VDS +A  RR         +    +K  Q+   ++P
Sbjct: 185 IGSNEPDPVRVTTKRREPETGLPAVDSGSAKTRRILVANGDELERERGSKVFQVAHHIMP 244

Query: 200 AGEHLLVN 207
            GE LLVN
Sbjct: 245 LGEQLLVN 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053681|ref|XP_002297926.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222845184|gb|EEE82731.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 127/256 (49%), Positives = 152/256 (59%), Gaps = 57/256 (22%)

Query: 2   ISHLHHHQYHGSSSSNKNDGLVISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSP 61
            S L HH  H S+S N      + SCL E WGDLPLRV+DSEDM+I+N+L DAV  GWSP
Sbjct: 10  FSALSHHHQHRSTSFNS-----LISCLNETWGDLPLRVDDSEDMVIYNFLRDAVCCGWSP 64

Query: 62  LD--------------------STATSSVKAES-------------VSDNYKNNNNINNQ 88
           LD                    +  T+ VKAE              V ++  N   +  +
Sbjct: 65  LDLSTSTTTTSSTTTTTTTTTTTITTNVVKAEPKDELDLEAEPIKLVQESSLNMEAVVTK 124

Query: 89  KMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSK 148
           K+   GRHYRGVRQRPWGKFAAE RDPAKNGARVWLGTYETA+EAALAYDRAA+ +RGSK
Sbjct: 125 KVVTKGRHYRGVRQRPWGKFAAETRDPAKNGARVWLGTYETAKEAALAYDRAAYRMRGSK 184

Query: 149 ALLNFPHRIGSDEPPPVRVTAKRSH------SVDSAAAAKRRK--DSAAAKE-------- 192
           ALLNFPH+IGS+EP PVR+TAKR        +VD+ +A  R+   D  A  E        
Sbjct: 185 ALLNFPHKIGSNEPDPVRITAKRRQPDTGLTAVDTGSAKMRKMLVDEGAELERGVGYSVF 244

Query: 193 ---HQLTMLPAGEHLL 205
              H   ++P GE LL
Sbjct: 245 QVGHHKGLMPVGEQLL 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57012759|sp|Q40479.1|ERF2_TOBAC RecName: Full=Ethylene-responsive transcription factor 2; Short=NtERF2; AltName: Full=Ethylene-responsive element-binding factor 2; Short=EREBP-2 gi|1208498|dbj|BAA07324.1| ethylene-responsive element binding protein [Nicotiana tabacum]

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 141/218 (64%), Gaps = 35/218 (16%)

Query: 24  ISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTATSSVKAES--------- 74
           +  CLT+ WGDLPL+V+DSEDM+I+  L DA+ +GW+P + T+T  +KAE          
Sbjct: 17  LMPCLTDTWGDLPLKVDDSEDMVIYGLLSDALTAGWTPFNLTSTE-IKAEPREEIEPATI 75

Query: 75  -VSDNYKNNNNINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEA 133
            V            Q +   GRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEA
Sbjct: 76  PVPSVAPPAETTTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEA 135

Query: 134 ALAYDRAAFDIRGSKALLNFPHRIGSDEPPPVRVTAKR------SHSVDSA---AAAKRR 184
           ALAYD+AA+ +RGSKALLNFPHRIG +EP PVR+TAKR      S S+ SA    + KRR
Sbjct: 136 ALAYDKAAYRMRGSKALLNFPHRIGLNEPEPVRLTAKRRSPEPASSSISSALENGSPKRR 195

Query: 185 KDSAAAKEH---------------QLTMLPAGEHLLVN 207
           + + AAK+                Q+   P GE LLV+
Sbjct: 196 RKAVAAKKAELEVQSRSNAMQVGCQMEQFPVGEQLLVS 233

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|376372998|gb|AFB35653.1| ERF8 [Gossypium hirsutum]

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 120/265 (45%), Positives = 155/265 (58%), Gaps = 63/265 (23%)

Query: 1   MISHLHHHQYHGSSSSNKNDGLVISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWS 60
           +  +   HQY  + S        ++SCLTE WGDLPL+V+DSEDM+I+N L++A+N GWS
Sbjct: 6   LCEYSFSHQYPRTPSFT-----CLNSCLTERWGDLPLKVDDSEDMLIYNSLHEALNFGWS 60

Query: 61  PLDSTATSSVKAES---------------------------------VSDNYKNNNNINN 87
           P DST  +++K E+                                 +S   +    +  
Sbjct: 61  PSDSTLPTAIKDEAEVLTPVIKVNPIGSTQPVDAATTQMLFGTAFMGISSENETAFFMGK 120

Query: 88  QKMC--------RGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDR 139
           Q+ C          GRHYRGVRQRPWGKFAAEIRD AKNGARVWLGTYETAEEAALAYDR
Sbjct: 121 QEKCFRNGNQRVAKGRHYRGVRQRPWGKFAAEIRDSAKNGARVWLGTYETAEEAALAYDR 180

Query: 140 AAFDIRGSKALLNFPHRIGSDEPPPVRVTAKRSHSVDSA--AAAKRRKDSAAAKE----- 192
           AAF +RGS+ALLNFPHRIG++EP PVR+TAKR  +  S+    + +R+ S   K+     
Sbjct: 181 AAFKMRGSRALLNFPHRIGNNEPAPVRITAKRRENEPSSYNTPSPKRRKSLVTKQTELER 240

Query: 193 ----------HQLTMLPAGEHLLVN 207
                     +Q+ ++P GE LLVN
Sbjct: 241 DMGLTVFQLGYQMGLMPLGEQLLVN 265

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57012876|sp|Q9LW50.1|ERF2_NICSY RecName: Full=Ethylene-responsive transcription factor 2; Short=NsERF2; AltName: Full=Ethylene-responsive element-binding factor 2; Short=EREBP-2 gi|8809571|dbj|BAA97122.1| ethylene-responsive element binding factor [Nicotiana sylvestris]

 Score =  216 bits (549), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 115/232 (49%), Positives = 141/232 (60%), Gaps = 40/232 (17%)

Query: 10  YHGSSSSNKNDGLVISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTATSS 69
           YH +SS +      +  CLT+ WGDLPL+V+DSEDM+I+  L DA+ +GW+P + T+T  
Sbjct: 12  YHRTSSFSS-----LMPCLTDTWGDLPLKVDDSEDMVIYGLLSDALTTGWTPFNLTSTE- 65

Query: 70  VKAES----------VSDNYKNNNNINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNG 119
           +KAE           V            Q +   GRHYRGVRQRPWGKFAAEIRDPAKNG
Sbjct: 66  IKAEPREEIEPATSPVPSVAPPAETTTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNG 125

Query: 120 ARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPHRIGSDEPPPVRVTAKR-------- 171
           ARVWLGTYETAEEAALAYD+AA+ +RGSKALLNFPHRIG +EP PVR+T KR        
Sbjct: 126 ARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLNEPEPVRLTVKRRSPEPASS 185

Query: 172 -SHSVDSAAAAKRRKDSAAAKEH---------------QLTMLPAGEHLLVN 207
                   +  KRR+ + AAK+                Q+   P GE LLV+
Sbjct: 186 SISPASENSLPKRRRKAVAAKQAELEVQSRSNVMQVGCQMEQFPVGEQLLVS 237

Source: Nicotiana sylvestris

Species: Nicotiana sylvestris

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319992789|emb|CBJ55933.1| ethylene response factor 2.2 [Bupleurum kaoi]

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 113/216 (52%), Positives = 141/216 (65%), Gaps = 33/216 (15%)

Query: 24  ISSCLT-ENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTATS--------SVKAES 74
           + +CL+ E WGDLPL+ +DSEDM+I+N+L DAV +GW+P + TAT          +K ES
Sbjct: 19  LMTCLSSETWGDLPLKEDDSEDMVIYNFLRDAVTAGWTPFNFTATDVIKPEPADEIKPES 78

Query: 75  VSDNYKNNNNINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAA 134
           V+    +    +     +G RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAA
Sbjct: 79  VTPTPISIPTTSAASPAKG-RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAA 137

Query: 135 LAYDRAAFDIRGSKALLNFPHRIGSDEPPPVRVTAKRSHSVDSAAAA------KRRK--- 185
           LAYDRAA+ +RGSKALLNFPHR GS+EP PVR+TAKR  S +   +       KRRK   
Sbjct: 138 LAYDRAAYRMRGSKALLNFPHRAGSNEPDPVRITAKRKCSPEPTGSGSGSESPKRRKRGG 197

Query: 186 --------------DSAAAKEHQLTMLPAGEHLLVN 207
                          +A   + ++  +P GE LLV+
Sbjct: 198 VSADQKTEPEVESRSNACPIKCEIRQMPVGEQLLVS 233

Source: Bupleurum kaoi

Species: Bupleurum kaoi

Genus: Bupleurum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145077169|gb|ABP35567.1| ERF transcription factor [Solanum tuberosum]

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 136/218 (62%), Gaps = 35/218 (16%)

Query: 24  ISSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTATSSVKAE---------S 74
           +  CLTE+WGDLPL+VNDSEDM+I+  L DA + GW+P + T +S VK E         S
Sbjct: 31  LMPCLTESWGDLPLKVNDSEDMVIYGLLQDAFSIGWTPSNLT-SSEVKPEPREEIEPVMS 89

Query: 75  VSDNYKNNNNINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAA 134
            S +           +   GRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYE+AEEAA
Sbjct: 90  TSVSPPTETAAAPAALQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAA 149

Query: 135 LAYDRAAFDIRGSKALLNFPHRIGSDEPPPVRVTAKR---------SHSVDSAAAAKRRK 185
           LAYD+AAF +RG+KALLNFPHRIG +EP PVRVT KR           S   + + KRR+
Sbjct: 150 LAYDKAAFRMRGTKALLNFPHRIGLNEPEPVRVTVKRRLPEPASSSVSSASESGSPKRRR 209

Query: 186 DSAAAKEH----------------QLTMLPAGEHLLVN 207
              AAK+                 Q+   P GE LLVN
Sbjct: 210 KGVAAKQAELEVQSRGPNVIQVGCQMEQFPVGEQLLVN 247

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.705	0.544	0.490	1.7e-34
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.724	0.617	0.484	5.2e-33
TAIR|locus:2055002	226	ERF13 "ethylene-responsive ele	0.676	0.619	0.5	4.7e-32
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.555	0.379	0.429	2.7e-20
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.328	0.226	0.573	1.6e-17
TAIR|locus:2151576	201	AT5G61590 [Arabidopsis thalian	0.502	0.517	0.437	2.5e-17
TAIR|locus:2156171	248	AT5G61890 [Arabidopsis thalian	0.299	0.25	0.571	3.7e-17
TAIR|locus:2176187	221	AT5G51190 [Arabidopsis thalian	0.391	0.366	0.488	8.6e-17
TAIR|locus:2129106	282	ERF6 "AT4G17490" [Arabidopsis	0.328	0.241	0.544	3.7e-16
TAIR|locus:2151591	241	ERF104 "ethylene response fact	0.289	0.248	0.566	2e-15

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 79/161 (49%), Positives = 93/161 (57%)

Query:    27 CLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTATS------SVKAE------- 73
             C TE+WGDLPL+ NDSEDM+++  L DA + GW P  S++        SVK E       
Sbjct:    63 CFTESWGDLPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPESFAA 122

Query:    74 --SVSDXXXXXXXXXXQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGXXXXXX 131
               SV                  G+HYRGVRQRPWGKFAAEIRDPAKNGARVWLG      
Sbjct:   123 VDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAE 182

Query:   132 XXXXXXXXXXFDIRGSKALLNFPHRIGSDEPPPVRVTAKRS 172
                       F +RGS+ALLNFP R+ S EP PVR+ +KRS
Sbjct:   183 DAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKRS 223

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 76/157 (48%), Positives = 92/157 (58%)

Query:    25 SSCLTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTAT---SSVKAESVSDXXXX 81
             SSC TE+WG LPL+ NDSEDM+++  L DA +   S  D +      +VK E   +    
Sbjct:    38 SSCFTESWGGLPLKENDSEDMLVYGLLKDAFHFDTSSSDLSCLFDFPAVKVEPTENFTAM 97

Query:    82 XX----XXXXQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGXXXXXXXXXXXX 137
                        +     +HYRGVRQRPWGKFAAEIRDPAKNGARVWLG            
Sbjct:    98 EEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAY 157

Query:   138 XXXXFDIRGSKALLNFPHRIGSDEPPPVRVTAKRSHS 174
                 F +RGS+ALLNFP R+ S EP PVR+T+KRS S
Sbjct:   158 DIAAFRMRGSRALLNFPLRVNSGEPDPVRITSKRSSS 194

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2055002 ERF13 "ethylene-responsive element binding factor 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 72/144 (50%), Positives = 84/144 (58%)

Query:    28 LTENWGDLPLRVNDSEDMIIFNYLYDAVNSGWSPLDSTATSSVKAESVSDXXXXXXXXXX 87
             L +NW DLPL V+DS+DM I+N L DAV+SGW+P     TS  +                
Sbjct:    27 LNDNWSDLPLSVDDSQDMAIYNTLRDAVSSGWTPSVPPVTSPAEENKPPATKASGSHAPR 86

Query:    88 QKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGXXXXXXXXXXXXXXXXFDIRGS 147
             QK    G  YRGVR+RPWGKFAAEIRDP KNGARVWLG                F +RGS
Sbjct:    87 QK----GMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGS 142

Query:   148 KALLNFPHRIGSDEPPPVRVTAKR 171
             KA LNFPH IGS +  PVR+  +R
Sbjct:   143 KAKLNFPHLIGSCKYEPVRIRPRR 166

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 52/121 (42%), Positives = 68/121 (56%)

Query:    41 DSED-MIIFNYLYDAVNSGWSPLDSTATSSVKAESVSDXXXXXXXXXXQKMCRGGRHYRG 99
             DS D   I ++L  + +   +P + T+T +     + +          +     G+HYRG
Sbjct:    97 DSYDGSSIGSFLASSSSEAGTPGEVTSTEATVTPGIREGEGEAVAVASR-----GKHYRG 151

Query:   100 VRQRPWGKFAAEIRDPAKNGARVWLGXXXXXXXXXXXXXXXXFDIRGSKALLNFPHRIGS 159
             VRQRPWGKFAAEIRDPAKNGARVWLG                + +RGS+ALLNFP RIGS
Sbjct:   152 VRQRPWGKFAAEIRDPAKNGARVWLGTFDSAEEAAVAYDRAAYRMRGSRALLNFPLRIGS 211

Query:   160 D 160
             +
Sbjct:   212 E 212

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 39/68 (57%), Positives = 45/68 (66%)

Query:    95 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGXXXXXXXXXXXXXXXXFDIRGSKALLNFP 154
             +HYRGVRQRPWGKFAAEIRDP K G+RVWLG                F +RGSKA+LNFP
Sbjct:   154 KHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFP 213

Query:   155 HRIGSDEP 162
               +G  +P
Sbjct:   214 LEVGKWKP 221

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2151576 AT5G61590 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 49/112 (43%), Positives = 60/112 (53%)

Query:    60 SPLDSTATSSVKAESVSDXXXXXXXXXXQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNG 119
             S   S+ T+S + E+VS+           K     RHYRGVR+RPWGKFAAEIRDPAK G
Sbjct:    77 SSSSSSTTTSPEVETVSNRKKT-------KRFEETRHYRGVRRRPWGKFAAEIRDPAKKG 129

Query:   120 ARVWLGXXXXXXXXXXXXXXXXFDIRGSKALLNFPHRIGSDEPPPVRVTAKR 171
             +R+WLG                F +RG KA+LNFP   G  + P V    KR
Sbjct:   130 SRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKYDAP-VNSCRKR 180

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

TAIR|locus:2156171 AT5G61890 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
 Identities = 36/63 (57%), Positives = 39/63 (61%)

Query:    95 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGXXXXXXXXXXXXXXXXFDIRGSKALLNFP 154
             RHYRGVRQRPWGK+AAEIRDP K  ARVWLG                   +GSKA LNFP
Sbjct:    88 RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP 146

Query:   155 HRI 157
              R+
Sbjct:   147 ERV 149

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2176187 AT5G51190 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 42/86 (48%), Positives = 48/86 (55%)

Query:    95 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGXXXXXXXXXXXXXXXXFDIRGSKALLNFP 154
             RHYRGVR+RPWGK+AAEIRDP K G RVWLG                F +RGSKA+LNFP
Sbjct:    70 RHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFP 129

Query:   155 HRIGS-----DEPPPVRVTAKRSHSV 175
                G      D    + + AKR   V
Sbjct:   130 LEAGKHEDLGDNKKTISLKAKRKRQV 155

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2129106 ERF6 "AT4G17490" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 37/68 (54%), Positives = 41/68 (60%)

Query:    95 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGXXXXXXXXXXXXXXXXFDIRGSKALLNFP 154
             RHYRGVR RPWGKFAAEIRDP + G RVWLG                F +RGSKA+LNFP
Sbjct:   135 RHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFP 194

Query:   155 HRIGSDEP 162
               +    P
Sbjct:   195 LEVDKWNP 202

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009644 "response to high light intensity" evidence=IMP

TAIR|locus:2151591 ERF104 "ethylene response factor 104" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 34/60 (56%), Positives = 39/60 (65%)

Query:    95 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGXXXXXXXXXXXXXXXXFDIRGSKALLNFP 154
             RHYRGVR+RPWGK+AAEIRDP K G R+WLG                F +RG KA+LNFP
Sbjct:    86 RHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFP 145

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.III.1595.1 annotation not avaliable (195 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	1e-32
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-30
pfam00847	53	pfam00847, AP2, AP2 domain	2e-11

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  111 bits (281), Expect = 1e-32
 Identities = 45/60 (75%), Positives = 50/60 (83%), Gaps = 1/60 (1%)

Query: 96  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPH 155
            YRGVRQRPWGK+ AEIRDP+K G RVWLGT++TAEEAA AYDRAAF  RG  A LNFP+
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSK-GKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  106 bits (266), Expect = 2e-30
 Identities = 43/60 (71%), Positives = 49/60 (81%), Gaps = 1/60 (1%)

Query: 96  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPH 155
            YRGVRQRPWGK+ AEIRDP   G R+WLGT++TAEEAA AYDRAA  +RGS A+LNFP 
Sbjct: 2   KYRGVRQRPWGKWVAEIRDP-SGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 56.5 bits (137), Expect = 2e-11
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 96  HYRGVRQRP-WGKFAAEIRDPAKNGA-RVWLGTYETAEEAALAYDRAAFDIRG 146
            Y+GVR    WG++ AEIRDP +    R  LGT+ T EEAA A   A   +RG
Sbjct: 2   GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.84
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.82
PHA00280	121	putative NHN endonuclease	99.63
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.22
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	80.84

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.84  E-value=6.2e-21  Score=133.46  Aligned_cols=61  Identities=70%  Similarity=1.269  Sum_probs=56.3

Q ss_pred             CceEEeEECCCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 028566           95 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPHR  156 (207)
Q Consensus        95 S~yRGVr~r~~GKW~A~Ir~~~~~gkrv~LGtFdT~EeAA~AYD~AA~~~~G~~A~lNFp~~  156 (207)
                      |+|+||+++++|||+|+|+++. .|+++|||+|+|+||||.|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~-~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCC-CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999888999999999763 268999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.82  E-value=4.7e-20  Score=130.59  Aligned_cols=62  Identities=71%  Similarity=1.235  Sum_probs=57.1

Q ss_pred             ceEEeEECCCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 028566           96 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPHRIG  158 (207)
Q Consensus        96 ~yRGVr~r~~GKW~A~Ir~~~~~gkrv~LGtFdT~EeAA~AYD~AA~~~~G~~A~lNFp~~~~  158 (207)
                      +|+||+++++|||+|+|+++. +|+++|||+|+|+||||.|||.++++++|.++.+|||.+.+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            599998888999999999763 57899999999999999999999999999999999998754

>PHA00280 putative NHN endonuclease

Probab=99.63  E-value=8.3e-16  Score=122.68  Aligned_cols=78  Identities=12%  Similarity=0.143  Sum_probs=67.0

Q ss_pred             cccccccccccccccccCccCCCCCCCceEEeE-ECCCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHhhcCC
Q 028566           69 SVKAESVSDNYKNNNNINNQKMCRGGRHYRGVR-QRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGS  147 (207)
Q Consensus        69 ~~k~e~~~~~~~~~n~~n~~~~~~~~S~yRGVr-~r~~GKW~A~Ir~~~~~gkrv~LGtFdT~EeAA~AYD~AA~~~~G~  147 (207)
                      ..-++.+...+..+|+.|++..+.++|+|+||. ....|||+|+|+   .+|++++||.|+|+|+|+.||+ ++.++||+
T Consensus        41 dnri~NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~---~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGe  116 (121)
T PHA00280         41 NDALDNLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVT---AEGKQHNFRSRDLLEVVAWIYR-TRRELHGQ  116 (121)
T ss_pred             CCcHHHhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEE---ECCEEEEcCCCCCHHHHHHHHH-HHHHHhhc
Confidence            344555666778888999888889999999995 556799999999   6799999999999999999997 77889999


Q ss_pred             CCC
Q 028566          148 KAL  150 (207)
Q Consensus       148 ~A~  150 (207)
                      +|.
T Consensus       117 Fa~  119 (121)
T PHA00280        117 FAR  119 (121)
T ss_pred             ccc
Confidence            985

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.22  E-value=2.8e-11  Score=82.53  Aligned_cols=53  Identities=32%  Similarity=0.481  Sum_probs=45.3

Q ss_pred             CceEEeE-ECCCCcEEEEEecCCCCC--eEEecCCCCCHHHHHHHHHHHHHhhcCC
Q 028566           95 RHYRGVR-QRPWGKFAAEIRDPAKNG--ARVWLGTYETAEEAALAYDRAAFDIRGS  147 (207)
Q Consensus        95 S~yRGVr-~r~~GKW~A~Ir~~~~~g--krv~LGtFdT~EeAA~AYD~AA~~~~G~  147 (207)
                      |+|+||+ .+..++|+|+|++...+|  ++++||.|++++||++||+.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899996 455799999999853343  8999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=80.84  E-value=5.6  Score=26.06  Aligned_cols=38  Identities=13%  Similarity=0.149  Sum_probs=28.5

Q ss_pred             cEEEEEe--cC-CCCCeEEecCCCCCHHHHHHHHHHHHHhh
Q 028566          107 KFAAEIR--DP-AKNGARVWLGTYETAEEAALAYDRAAFDI  144 (207)
Q Consensus       107 KW~A~Ir--~~-~~~gkrv~LGtFdT~EeAA~AYD~AA~~~  144 (207)
                      +|..+|.  ++ ..+.++++-+-|.|..||-.+.......+
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~   41 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAEL   41 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence            5777773  33 33347788999999999999998876654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		5e-20
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		6e-19

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 48/68 (70%)
Query: 94  GRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGXXXXXXXXXXXXXXXXFDIRGSKALLNF 153
           G+HYRGVRQRPWGKFAAEIRDPAKNGARVWLG                F +RGS+ALLNF
Sbjct: 3   GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62
Query: 154 PHRIGSDE 161
           P R+ S E
Sbjct: 63  PLRVNSGE 70

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/63 (65%), Positives = 45/63 (71%)
Query: 95  RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGXXXXXXXXXXXXXXXXFDIRGSKALLNFP 154
           +HYRGVRQRPWGKFAAEIRDPAKNGARVWLG                F +RGS+ALLNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
Query: 155 HRI 157
            R+
Sbjct: 61  LRV 63
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
1gcc_A	63	Ethylene responsive element binding factor 1; tran	4e-44

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  140 bits (355), Expect = 4e-44
 Identities = 55/63 (87%), Positives = 61/63 (96%)

Query: 95  RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFP 154
           +HYRGVRQRPWGKFAAEIRDPAKNGARVWLGT+ETAE+AALAYDRAAF +RGS+ALLNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 155 HRI 157
            R+
Sbjct: 61  LRV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	87.94
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	81.69

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=4.9e-27  Score=166.42  Aligned_cols=62  Identities=89%  Similarity=1.479  Sum_probs=59.3

Q ss_pred             ceEEeEECCCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 028566           96 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPHRI  157 (207)
Q Consensus        96 ~yRGVr~r~~GKW~A~Ir~~~~~gkrv~LGtFdT~EeAA~AYD~AA~~~~G~~A~lNFp~~~  157 (207)
                      +||||++++||||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|.++.+|||+++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            69999988999999999999888899999999999999999999999999999999999875

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=87.94  E-value=0.0077  Score=48.52  Aligned_cols=63  Identities=8%  Similarity=-0.144  Sum_probs=37.4

Q ss_pred             cccccccccccccccCccCCCCCCCceEEeEECCCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHH
Q 028566           71 KAESVSDNYKNNNNINNQKMCRGGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYD  138 (207)
Q Consensus        71 k~e~~~~~~~~~n~~n~~~~~~~~S~yRGVr~r~~GKW~A~Ir~~~~~gkrv~LGtFdT~EeAA~AYD  138 (207)
                      -++.+.-.+..+|..+.......+ .++||.....++|.+.|...    +..+||.|+|.+|||++|.
T Consensus        84 ~~~NL~~~t~~eN~~~~~~~~~~~-~~~g~~~~~~~k~~~vi~~~----~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           84 LSTNLRWVTQKINVENQMSRGTLN-VSKAQQIAKIKNQKPIIVIS----PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             CGGGEEEECHHHHHHHHHHHTCCC-CHHHHHHHHHHTCCCEEEEC----TTSCEEEESCHHHHHHHHT
T ss_pred             CHHHcEECCHHHHhhcccccCccc-ceeeeeeccCCCCceEEEEc----CCceEEeeCCHHHHHHHHC
Confidence            334444444444544433222222 24677333346788888743    3477999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=81.69  E-value=0.47  Score=34.51  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=18.9

Q ss_pred             CCCceEEeE-ECCCCcEEEEEecC
Q 028566           93 GGRHYRGVR-QRPWGKFAAEIRDP  115 (207)
Q Consensus        93 ~~S~yRGVr-~r~~GKW~A~Ir~~  115 (207)
                      ..|+|.||+ ....+.|.|.-.+.
T Consensus         4 ~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            4 MSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCcEEeecCCceEEEEEecC
Confidence            578899994 55579999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	4e-35

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  116 bits (293), Expect = 4e-35
 Identities = 55/63 (87%), Positives = 61/63 (96%)

Query: 95  RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFP 154
           +HYRGVRQRPWGKFAAEIRDPAKNGARVWLGT+ETAE+AALAYDRAAF +RGS+ALLNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 155 HRI 157
            R+
Sbjct: 61  LRV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.93

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=2.1e-27  Score=167.10  Aligned_cols=62  Identities=89%  Similarity=1.479  Sum_probs=59.3

Q ss_pred             ceEEeEECCCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 028566           96 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDRAAFDIRGSKALLNFPHRI  157 (207)
Q Consensus        96 ~yRGVr~r~~GKW~A~Ir~~~~~gkrv~LGtFdT~EeAA~AYD~AA~~~~G~~A~lNFp~~~  157 (207)
                      +||||+++++|||.|+|+++..+++++|||+|+|+||||+|||+|+++++|.++.+|||.++
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~   63 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence            59999988899999999998888999999999999999999999999999999999999875