Citrus Sinensis ID: 028583

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MLVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIRRSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSLLDPFRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQEREGMQRRLPTKEKEELREGRQQDMHRSTPPPTHSNSRRRKGIPQRAPFVT
Secondary Structure (PSIPRED)
ccccHHHHHHHccccccccccccccccccccEEEccccccccccccccccccccccEEEEccccccEEEccccccEEcccccEEEEEcccEEEEEEcccccccccccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHccccHHccccccccccEEEEEcccccccHHccccccccccEEEEEEEEcccEEEHHHHHHHEcccccEEEEEcccEEEEEccccccccccccccccccHHHcccccccccEEEEEEEEEEEcccccccccccccccHHHcccccccccccccccccccccccccccccccccccccHHHHcccccccccccc
Coil and Loop (DISEMBL)
mlvppwlesllstsffticprhndsprnecnmycldcmsgafcfycrssrhkdhpviqirrssyhDVVRVAEIQKALDISEVQTYVINSARVLFlnerpqpkgpvgkgvshLCEIcgrslldpfrfcslgcklegikkngeASFVLsnkneeeipqeregmqrrlptkEKEELREGrqqdmhrstpppthsnsrrrkgipqrapfvt
Flexible Loop (DISEMBL)
MLVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIRRSSYHDVVRVAEIqkaldisevQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSLLDPFRFCSLGCKLEGIKkngeasfvlsnkneeeipqeregmqrrlptkeKEELregrqqdmhrstpppthsnsrrrkgipqrapfvt
Low Complexity Region (SEG)
MLVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIRRSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSLLDPFRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQEREGMQRRLPTKEKEELREGRQQDMHRSTPPPTHSNSRRRKGIPQRAPFVT
Disordered region (IsUnstruct)
****PWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIRRSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNER****GPVGKGVSHLCEICGRSLLDPFRFCSLGCKLEGIKKN********************************************************************
Disordered Region (DISOPRED)
*LVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIRRSSYHDVVRVAEIQKALDISEVQTYVINSARVLFL******************EICGRSLLDPFRFCSLGCKLEGIKK**************************************************************QRAPFV*
Disordered Region (DISEMBL)
MLVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIRRSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSLLDPFRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQEREGMQRR*******************************************
Disordered Region (DISPRO)
*LVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIRRSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPK******VSHLCEICGRSLLDPFRFCSLGCKLEGIKK*********************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIRRSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSLLDPFRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQEREGMQRRLPTKEKEELREGRQQDMHRSTPPPTHSNSRRRKGIPQRAPFVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
224054246	209	predicted protein [Populus trichocarpa]	0.985	0.976	0.795	6e-91
224106874	273	predicted protein [Populus trichocarpa]	0.971	0.736	0.780	4e-90
255556796	208	protein with unknown function [Ricinus c	0.980	0.975	0.740	7e-82
356533371	208	PREDICTED: uncharacterized protein LOC10	0.966	0.961	0.735	9e-82
255565507	214	protein with unknown function [Ricinus c	0.985	0.953	0.760	4e-81
356548377	209	PREDICTED: uncharacterized protein LOC10	0.966	0.956	0.732	5e-81
224069697	202	predicted protein [Populus trichocarpa]	0.951	0.975	0.736	8e-80
297740001	204	unnamed protein product [Vitis vinifera]	0.985	1.0	0.724	9e-79
224138806	201	predicted protein [Populus trichocarpa]	0.951	0.980	0.743	1e-78
356570794	213	PREDICTED: uncharacterized protein LOC10	0.966	0.938	0.703	2e-77

>gi|224054246|ref|XP_002298164.1| predicted protein [Populus trichocarpa] gi|222845422|gb|EEE82969.1| predicted protein [Populus trichocarpa]

 Score =  338 bits (868), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 163/205 (79%), Positives = 179/205 (87%), Gaps = 1/205 (0%)

Query: 1   MLVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIR 60
           MLVPPWLESLLST+FFT+CPRH D+PR+ECNM+CLDC + AFCFYCRS+RHKDH VIQIR
Sbjct: 4   MLVPPWLESLLSTAFFTVCPRHRDAPRSECNMFCLDCNTEAFCFYCRSTRHKDHSVIQIR 63

Query: 61  RSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSL 120
           RSSYHDVVRVAEIQK LDI+ VQTYVINSARVLFLNERPQPK    KGV HLCEICGRSL
Sbjct: 64  RSSYHDVVRVAEIQKVLDITGVQTYVINSARVLFLNERPQPKSSTSKGVPHLCEICGRSL 123

Query: 121 LDPFRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQEREGMQRRLPTKEKEELREGRQQD 180
           LDPFRFCSLGCKL  IK NG+A+F LS K +EE+ + REGM RRLP+KE+EELREG QQD
Sbjct: 124 LDPFRFCSLGCKLVRIKNNGDATFNLSTK-DEEVGEMREGMGRRLPSKEEEELREGSQQD 182

Query: 181 MHRSTPPPTHSNSRRRKGIPQRAPF 205
           M+ ST  P HSNSRRRKGIP RAPF
Sbjct: 183 MYTSTLTPPHSNSRRRKGIPHRAPF 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106874|ref|XP_002314313.1| predicted protein [Populus trichocarpa] gi|222850721|gb|EEE88268.1| predicted protein [Populus trichocarpa]

 Score =  336 bits (861), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 160/205 (78%), Positives = 177/205 (86%), Gaps = 4/205 (1%)

Query: 1   MLVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIR 60
           MLVPPWLESLLS +FFTICPRH ++PR+ECNM+CLDC + +FCFYCRS++HKDHPVIQIR
Sbjct: 71  MLVPPWLESLLSAAFFTICPRHREAPRSECNMFCLDCNTDSFCFYCRSTQHKDHPVIQIR 130

Query: 61  RSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSL 120
           RSSYHDVVRVAEIQK LDIS VQTYVINSARVLFLNERPQPK    KGVSHLC+ICGRSL
Sbjct: 131 RSSYHDVVRVAEIQKVLDISGVQTYVINSARVLFLNERPQPKSSTSKGVSHLCQICGRSL 190

Query: 121 LDPFRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQEREGMQRRLPTKEKEELREGRQQD 180
           LDPFRFCSLGCKL GIK +G+ +F LS KNEE     R+GM RRLP KE+EELREG QQD
Sbjct: 191 LDPFRFCSLGCKLVGIKNSGDTNFNLSTKNEE----NRDGMARRLPLKEEEELREGSQQD 246

Query: 181 MHRSTPPPTHSNSRRRKGIPQRAPF 205
           M++STP P HS SRRRKGIP RAP 
Sbjct: 247 MYKSTPIPPHSTSRRRKGIPHRAPL 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556796|ref|XP_002519431.1| protein with unknown function [Ricinus communis] gi|223541294|gb|EEF42845.1| protein with unknown function [Ricinus communis]

 Score =  308 bits (790), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 154/208 (74%), Positives = 174/208 (83%), Gaps = 5/208 (2%)

Query: 1   MLVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIR 60
           MLVPPWLESLLST+FF+IC  H D+ R+ECNMYCLDC   AFCFYCRSSRHKDH VIQIR
Sbjct: 1   MLVPPWLESLLSTAFFSICRTHGDAARSECNMYCLDCRGDAFCFYCRSSRHKDHQVIQIR 60

Query: 61  RSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSL 120
           RSSYHDVVRVAEIQK +DIS VQTYVINSARVLFLNERPQPK   GKGV+H+CEICGRSL
Sbjct: 61  RSSYHDVVRVAEIQKVIDISGVQTYVINSARVLFLNERPQPKS--GKGVAHICEICGRSL 118

Query: 121 LDPFRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQEREGMQRRLPT--KEKEELREGRQ 178
           LD FRFCSLGCK+ GIK+NG+ASF L  KNEEE+ + REG+  R+    +E EELREG Q
Sbjct: 119 LDTFRFCSLGCKVVGIKRNGDASFSLEAKNEEELMERREGITSRIVVSRREDEELREGSQ 178

Query: 179 QDMH-RSTPPPTHSNSRRRKGIPQRAPF 205
           QD++  + PPP  S++RRRKGIP RAPF
Sbjct: 179 QDIYPPTPPPPPTSSARRRKGIPHRAPF 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533371|ref|XP_003535238.1| PREDICTED: uncharacterized protein LOC100809455 [Glycine max]

 Score =  308 bits (789), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 153/208 (73%), Positives = 169/208 (81%), Gaps = 8/208 (3%)

Query: 1   MLVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIR 60
           MLVPPWLE LL+TSFF +C  H D+ R+ECNM+CLDC   AFCFYCRSS+HKDH VIQIR
Sbjct: 4   MLVPPWLEPLLNTSFFNVCRIHGDAARSECNMFCLDCNENAFCFYCRSSKHKDHQVIQIR 63

Query: 61  RSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSL 120
           RSSYHDVVRVAEIQK LDIS VQTYVINSARVLFLNERPQPK   GKGV+H+CEICGRSL
Sbjct: 64  RSSYHDVVRVAEIQKVLDISGVQTYVINSARVLFLNERPQPKS--GKGVAHICEICGRSL 121

Query: 121 LDPFRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQEREGMQRRLPTK---EKEELREGR 177
           LDPFRFCSLGCKL GIK+NG+ASF L  KNE       EGM RR  +    ++EELREG 
Sbjct: 122 LDPFRFCSLGCKLVGIKRNGDASFTLDAKNEAST---MEGMSRRSVSSRHHQEEELREGS 178

Query: 178 QQDMHRSTPPPTHSNSRRRKGIPQRAPF 205
           QQDM+ +TP P  SN+RRRKGIP RAPF
Sbjct: 179 QQDMYPATPSPPASNARRRKGIPHRAPF 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565507|ref|XP_002523744.1| protein with unknown function [Ricinus communis] gi|223537048|gb|EEF38684.1| protein with unknown function [Ricinus communis]

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 162/213 (76%), Positives = 178/213 (83%), Gaps = 9/213 (4%)

Query: 1   MLVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIR 60
           ML+PPWLESLLSTSFFTICPRH DS R+ECNM+CLDC +GAFCF CRSS+HK+H V+QIR
Sbjct: 1   MLIPPWLESLLSTSFFTICPRHQDSARSECNMFCLDCKNGAFCFCCRSSKHKEHSVLQIR 60

Query: 61  RSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGV-SHLCEICGRS 119
           RSSYHDVVRVAEIQ  LDIS VQTYVINSAR+LFLNERPQPK    KGV SHLCEICGRS
Sbjct: 61  RSSYHDVVRVAEIQNVLDISGVQTYVINSARILFLNERPQPKTSTSKGVSSHLCEICGRS 120

Query: 120 LLDPFRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQEREG-MQRRLPTK---EKEELRE 175
           LLDPFRFCSLGCK+ GIKKN +A F LS K +EEI Q REG M RRL +K   E+EELR 
Sbjct: 121 LLDPFRFCSLGCKIVGIKKNRDAHFNLSTK-KEEIEQRREGIMGRRLASKEEEEEEELRV 179

Query: 176 GRQQDMHRST---PPPTHSNSRRRKGIPQRAPF 205
           G QQ+M+RST   PPP +SNSRRRKGIP RAP 
Sbjct: 180 GSQQEMYRSTPLPPPPHNSNSRRRKGIPHRAPL 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548377|ref|XP_003542579.1| PREDICTED: uncharacterized protein LOC100779070 [Glycine max]

 Score =  305 bits (782), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 153/209 (73%), Positives = 169/209 (80%), Gaps = 9/209 (4%)

Query: 1   MLVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIR 60
           MLVPPWLE LL+TSFF +C  H D+ R+ECNM+CLDC   AFCFYCRSS+HKDH VIQIR
Sbjct: 4   MLVPPWLEPLLNTSFFDVCRIHGDAARSECNMFCLDCNENAFCFYCRSSKHKDHQVIQIR 63

Query: 61  RSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSL 120
           RSSYHDVVRVAEIQ  LDIS VQTYVINSARVLFLNERPQPK   GKGV+H+CEICGRSL
Sbjct: 64  RSSYHDVVRVAEIQTVLDISGVQTYVINSARVLFLNERPQPKS--GKGVAHICEICGRSL 121

Query: 121 LDPFRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQEREGMQRRLPTK---EKEELREGR 177
           LDPFRFCSLGCKL GIK+NG+ASF L  KNE       EGM RR  +    ++EELREG 
Sbjct: 122 LDPFRFCSLGCKLVGIKRNGDASFALDAKNEAST---MEGMSRRSVSSRHHQEEELREGS 178

Query: 178 QQDMHRSTP-PPTHSNSRRRKGIPQRAPF 205
           QQDM+ +TP PP  SN+RRRKGIP RAPF
Sbjct: 179 QQDMYPATPSPPASSNARRRKGIPHRAPF 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069697|ref|XP_002326397.1| predicted protein [Populus trichocarpa] gi|222833590|gb|EEE72067.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (772), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 151/205 (73%), Positives = 170/205 (82%), Gaps = 8/205 (3%)

Query: 1   MLVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIR 60
           MLVPPWLESLLST FFT+C  H D+ R+ECNMYCLDC   AFCFYCRSSRHKDH V+QIR
Sbjct: 4   MLVPPWLESLLSTQFFTVCRTHEDAARSECNMYCLDCEGDAFCFYCRSSRHKDHQVVQIR 63

Query: 61  RSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSL 120
           RSSYHDVVRV+EIQK LD S VQTYVINSARVLFLNERPQPK   GKGV+H+CEICGRSL
Sbjct: 64  RSSYHDVVRVSEIQKVLDTSGVQTYVINSARVLFLNERPQPKS--GKGVAHICEICGRSL 121

Query: 121 LDPFRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQEREGMQRRLPTKEKEELREGRQQD 180
           LDPFRFCSLGCKLEG+K+NG+ASF L  KN E +   REG+     + E+E+LREG QQD
Sbjct: 122 LDPFRFCSLGCKLEGVKRNGDASFTLEAKN-EALMGRREGI-----SGEEEDLREGSQQD 175

Query: 181 MHRSTPPPTHSNSRRRKGIPQRAPF 205
           ++  TPPP  S++RRRKGIP RAPF
Sbjct: 176 IYPPTPPPPPSSARRRKGIPHRAPF 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740001|emb|CBI30183.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (763), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 150/207 (72%), Positives = 171/207 (82%), Gaps = 3/207 (1%)

Query: 1   MLVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIR 60
           M VPPWLE LL+T FF+IC  H D+ R+ECNMYCLDC   +FCFYCRSSRHKDH VIQIR
Sbjct: 1   MPVPPWLEPLLTTPFFSICRTHGDAARSECNMYCLDCSGDSFCFYCRSSRHKDHQVIQIR 60

Query: 61  RSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSL 120
           RSSYHDVVRVAEIQK LDIS VQTYVINSARVLFLNERPQPK   GKGVSH+CE CGRSL
Sbjct: 61  RSSYHDVVRVAEIQKVLDISGVQTYVINSARVLFLNERPQPK--TGKGVSHICETCGRSL 118

Query: 121 LDPFRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQEREGMQRRLPTKEKEELREGRQQD 180
           LDPFRFCSLGCKL GIK+NG+ASF L  KNE  + +  EG+ RR  +++++ELREG QQD
Sbjct: 119 LDPFRFCSLGCKLVGIKRNGDASFSLEAKNEMAM-ERGEGISRRESSRDEDELREGLQQD 177

Query: 181 MHRSTPPPTHSNSRRRKGIPQRAPFVT 207
           ++  TPPP  S++RRRKGIP RAPF +
Sbjct: 178 IYPPTPPPPPSSARRRKGIPHRAPFAS 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138806|ref|XP_002322906.1| predicted protein [Populus trichocarpa] gi|222867536|gb|EEF04667.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 154/207 (74%), Positives = 170/207 (82%), Gaps = 10/207 (4%)

Query: 1   MLVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIR 60
           MLVPPWLESLLSTSFFT+C  H D+ RNECNMYCLDC  GAFCFYCRSSRHKDH VIQIR
Sbjct: 1   MLVPPWLESLLSTSFFTVCRTHGDAARNECNMYCLDCEGGAFCFYCRSSRHKDHQVIQIR 60

Query: 61  RSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSL 120
           RSSYHDVVRV EIQK LDIS VQTYVINSARVLFL ERPQPK   GKGV+H+C ICGRSL
Sbjct: 61  RSSYHDVVRVTEIQKVLDISGVQTYVINSARVLFLKERPQPK--YGKGVAHICVICGRSL 118

Query: 121 LDPFRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQEREGMQRRLPTKEKEELREG--RQ 178
           LDPFRFCSLGCKL G+K+NGEASF +  KN E + + REG+ R      +EELREG  +Q
Sbjct: 119 LDPFRFCSLGCKLVGVKRNGEASFTIEAKN-EALMERREGISR-----GEEELREGSQQQ 172

Query: 179 QDMHRSTPPPTHSNSRRRKGIPQRAPF 205
           QD++  TPPP  S++RRRKGIP RAPF
Sbjct: 173 QDIYPPTPPPPSSSARRRKGIPHRAPF 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570794|ref|XP_003553569.1| PREDICTED: uncharacterized protein LOC100803083 [Glycine max]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 145/206 (70%), Positives = 165/206 (80%), Gaps = 6/206 (2%)

Query: 1   MLVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIR 60
           +LVPPWLE LL T FF +C  H ++ R+ECNM+CL C   AFCFYC SSRHKDH VIQIR
Sbjct: 11  VLVPPWLEQLLHTPFFNVCRIHAEAARSECNMFCLHCNGEAFCFYCSSSRHKDHQVIQIR 70

Query: 61  RSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSL 120
           RSSYHDVVRV+EIQK LDIS VQTYVINSARVLFLN RPQPK   GKGV+H+CEICGRSL
Sbjct: 71  RSSYHDVVRVSEIQKVLDISGVQTYVINSARVLFLNVRPQPKS--GKGVAHICEICGRSL 128

Query: 121 LDPFRFCSLGCKLEGIKKNGEASFVLSNKNEE-EIPQEREGMQRRLPTKEKEELREGRQQ 179
           LDPFRFCSLGCKLEGI+KNG+ASF L  +NEE  +   R  +  R   +++EELREG  Q
Sbjct: 129 LDPFRFCSLGCKLEGIRKNGDASFALDGRNEELTMDTSRGSVSSR---QQEEELREGSTQ 185

Query: 180 DMHRSTPPPTHSNSRRRKGIPQRAPF 205
           DM+ +TP P+ SNSRRRKGIP RAPF
Sbjct: 186 DMYPATPSPSASNSRRRKGIPHRAPF 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2057867	189	AT2G27930 [Arabidopsis thalian	0.719	0.788	0.656	7e-54
TAIR|locus:2011721	245	AT1G76590 [Arabidopsis thalian	0.782	0.661	0.581	9.9e-54
TAIR|locus:2037405	246	AT1G21000 [Arabidopsis thalian	0.792	0.666	0.570	1.6e-53
TAIR|locus:2035614	213	AT1G32700 [Arabidopsis thalian	0.927	0.901	0.531	2e-49
TAIR|locus:2141070	227	AT4G17900 [Arabidopsis thalian	0.898	0.819	0.531	2e-47
TAIR|locus:2009879	216	AT1G43000 [Arabidopsis thalian	0.975	0.935	0.462	4.4e-45
TAIR|locus:2178580	226	AT5G46710 [Arabidopsis thalian	0.942	0.862	0.468	3.6e-41
TAIR|locus:1009023224	256	AT2G12646 "AT2G12646" [Arabido	0.632	0.511	0.451	7.9e-33
TAIR|locus:2101881	245	AT3G60670 [Arabidopsis thalian	0.666	0.563	0.423	1.4e-29
TAIR|locus:2015761	243	AT1G31040 [Arabidopsis thalian	0.719	0.613	0.406	9.1e-29

TAIR|locus:2057867 AT2G27930 [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 107/163 (65%), Positives = 126/163 (77%)

Query:     4 PPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIRRSS 63
             P WLE LL T+FF+ICPRH ++PRNECNM+CL C + AFCFYCRSS H DHPV+QIRRSS
Sbjct:     4 PKWLEGLLRTNFFSICPRHRETPRNECNMFCLSCQNAAFCFYCRSSFHIDHPVLQIRRSS 63

Query:    64 YHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPK----GPVG---KGVSHLCEIC 116
             YHDVVRV+EI+ ALDI  VQTYVINSARVLFLNERPQPK    G      K +S+ CE C
Sbjct:    64 YHDVVRVSEIENALDIRGVQTYVINSARVLFLNERPQPKNSSHGAASSTPKTMSYFCETC 123

Query:   117 GRSLLDPFRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQERE 159
              R+LLDPFRFCSLGCK+EG++KN E       + EE + +ER+
Sbjct:   124 CRTLLDPFRFCSLGCKVEGMRKNKE-------EEEERLRKERQ 159

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2011721 AT1G76590 [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
 Identities = 96/165 (58%), Positives = 121/165 (73%)

Query:     4 PPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIRRSS 63
             PPWL  +L  ++F  C  H  S ++ECNM+CLDC S AFC YC  + H++H V+QIRRSS
Sbjct:    18 PPWLIPMLRANYFIPCSIHAASNKSECNMFCLDCSSEAFCSYCLLN-HRNHRVLQIRRSS 76

Query:    64 YHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSLLDP 123
             YH+VVRV EIQK +DIS VQTY+INSAR++FLNERPQP+  +GKGV++ CEIC RSLLD 
Sbjct:    77 YHNVVRVNEIQKYIDISCVQTYIINSARIVFLNERPQPR--IGKGVTNTCEICCRSLLDS 134

Query:   124 FRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQEREGMQRRLPTK 168
             FRFCSLGCKL G+K++   +F L  K+  E   E E  +   PTK
Sbjct:   135 FRFCSLGCKLGGMKRDPSLTFSLRGKHGREYEGEWESDEATTPTK 179

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2037405 AT1G21000 [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 97/170 (57%), Positives = 123/170 (72%)

Query:     4 PPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIRRSS 63
             PPWL  +L  S+F  C  H DS +NECN++CLDC   AFC YC   +HKDH V+QIRRSS
Sbjct:    16 PPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLV-KHKDHRVVQIRRSS 74

Query:    64 YHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSLLDP 123
             YH+VVRV EIQK +DI+ VQTY+INSA+++FLNERPQP+  +GKGV++ CEIC RSLLD 
Sbjct:    75 YHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPR--IGKGVTNTCEICCRSLLDS 132

Query:   124 FRFCSLGCKLEGIKKNGEAS--FVLSNKNEEEIPQEREGMQRRLPTKEKE 171
             FRFCSLGCKL G+++ G+ S  F L  K+  E     E  +   PTK ++
Sbjct:   133 FRFCSLGCKLGGMRR-GDLSLTFSLKGKHGREYLGGSESDEATTPTKMRK 181

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035614 AT1G32700 [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 109/205 (53%), Positives = 134/205 (65%)

Query:     4 PPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIRRSS 63
             P WL+ LL   FF  C  H DS ++ECNMYCLDC +G  C  C S  HKDH  IQIRRSS
Sbjct:    12 PHWLKPLLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLSF-HKDHHAIQIRRSS 70

Query:    64 YHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSLLDP 123
             YHDV+RV+EIQK LDI+ VQTYVINSA+V+FLNERPQP+ P GKGV + CE+C RSL+D 
Sbjct:    71 YHDVIRVSEIQKFLDITGVQTYVINSAKVVFLNERPQPR-P-GKGVINTCEVCYRSLVDS 128

Query:   124 FRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQEREGMQRRLPTKEKEELREGRQQDMHR 183
             FRFCSLGCK+ GI K     +  +N ++ +       + R    K+ +++          
Sbjct:   129 FRFCSLGCKISGISKKKRKEWT-NNLSDSDDSYSSTSIGR---LKKNDDIMNN---SFTP 181

Query:   184 STPPPTHSNSR---RRKGIPQRAPF 205
             STPP +  N R   RRKGIP RAPF
Sbjct:   182 STPPLSAVNRRIAKRRKGIPHRAPF 206

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2141070 AT4G17900 [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 110/207 (53%), Positives = 130/207 (62%)

Query:     4 PPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIRRSS 63
             PPWL+ LL   FF  C  H DS ++ECNMYCLDC +G  C  C +  HKDH  IQIRRSS
Sbjct:    34 PPWLKPLLKEQFFVHCKFHGDSHKSECNMYCLDCTNGPLCSLCLA-HHKDHRTIQIRRSS 92

Query:    64 YHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSLLDP 123
             YHDV+RV EIQK LDI  +QTYVINSA+V+FLNERPQP+ P GKGV++ C++C RSL+D 
Sbjct:    93 YHDVIRVNEIQKYLDIGGIQTYVINSAKVVFLNERPQPR-P-GKGVTNTCKVCYRSLVDD 150

Query:   124 -FRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQEREGMQRRLPT-KEKEELREGRQQDM 181
              FRFCSLGCK+ G  +  E       K  E +  E E     +   K    L     Q  
Sbjct:   151 SFRFCSLGCKIAGTSRGFE-------KGRENLLMETEDSSSSIAIGKNITNL-----QSF 198

Query:   182 HRSTPP-PTHSNSR---RRKGIPQRAP 204
               STPP  T SN R   RRKGIP R+P
Sbjct:   199 SPSTPPLTTSSNCRIVKRRKGIPHRSP 225

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009879 AT1G43000 [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 99/214 (46%), Positives = 133/214 (62%)

Query:     1 MLVPPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIR 60
             ++ PPWL  +L   +F  C  H+ S ++ECN++CLDC   AFC  C +  H+ H VIQIR
Sbjct:     6 VMTPPWLTPMLRADYFVTCSIHSQSSKSECNLFCLDCSGNAFCSSCLA-HHRTHRVIQIR 64

Query:    61 RSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSL 120
             RSSYH+VVRV+EIQK +DIS +QTYVINSA++ FLN RPQ +   GK ++  C+IC R+L
Sbjct:    65 RSSYHNVVRVSEIQKHIDISCIQTYVINSAKIFFLNARPQCR--TGKSLNKTCQICSRNL 122

Query:   121 LDPFRFCSLGCKLEGIKKNGEASFVL--SNKNEEEIPQEREGMQRRLPTKEKEELREGRQ 178
             LD F FCSL CKLEG+K   + +  L  S K+++       G+  RL       + + R 
Sbjct:   123 LDSFLFCSLACKLEGVKNGEDPNLTLFHSGKSDDSSKIINTGICSRLIDGISIAVDDQRS 182

Query:   179 QD---MHRSTPP-PTHSN---SRRRKGIPQRAPF 205
             +    +   TP   +H N     RRKGIPQRAPF
Sbjct:   183 ETAGVLSPETPSIESHRNYPMKSRRKGIPQRAPF 216

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178580 AT5G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 96/205 (46%), Positives = 119/205 (58%)

Query:     4 PPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIRRSS 63
             P WL+ LL+  FF  C  H   PR EC MYCLDC + +FC  C S  H++H  IQIR SS
Sbjct:    28 PIWLKPLLNQHFFAQCKFHGHLPRTECKMYCLDCTNDSFCSLCLSE-HENHRTIQIRISS 86

Query:    64 YHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSLLDP 123
             YH+V +V EIQK LDIS +QTYVINS++VLFLNERPQ K P GKG ++ C +C R L + 
Sbjct:    87 YHNVTKVDEIQKYLDISSIQTYVINSSKVLFLNERPQSK-P-GKGFTNACMVCYRGLAEN 144

Query:   124 -FRFCSLGCKLEGIKKNGEASFVLSNKNEEEIPQEREGMQRRLPTKEKEELREGRQQDMH 182
              FRFCS+GCK+ G     +   V    N+ +      G++      E         Q + 
Sbjct:   145 CFRFCSIGCKVAGTSGVFQKR-VKHTTNDSDNSNNSSGVENNSSGAENGN---SNLQSLS 200

Query:   183 RSTP--PPTHSNSRRRKGIPQRAPF 205
               TP  PP     R RKGIP RAPF
Sbjct:   201 PPTPQFPPRSLRKRLRKGIPHRAPF 225

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023224 AT2G12646 "AT2G12646" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
 Identities = 61/135 (45%), Positives = 89/135 (65%)

Query:     4 PPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIRRSS 63
             P WL++L +  FF  CP H  + +NE N+ CLDC + + C +C  S H+ H ++Q+RR  
Sbjct:     6 PAWLDALYAEKFFVGCPYHETAKKNERNVCCLDCCT-SLCPHCVPS-HRFHRLLQVRRYV 63

Query:    64 YHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSLLDP 123
             YHDVVR+ ++QK +D S VQ Y INSA+V+F+ +RPQ +    KG  + C  C RSL +P
Sbjct:    64 YHDVVRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQ--FKGAGNYCTSCDRSLQEP 121

Query:   124 FRFCSLGCKLEGIKK 138
             +  CSLGCK++ + K
Sbjct:   122 YIHCSLGCKVDFVMK 136

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101881 AT3G60670 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 61/144 (42%), Positives = 85/144 (59%)

Query:     4 PPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIRRSS 63
             P WLE LL   FF  C  H D  +NE N+ C+DC     C +C SS H  H ++QIRR  
Sbjct:     7 PAWLEVLLKDKFFNACLDHEDDKKNEKNILCIDCCL-TICPHCLSS-HTSHRLLQIRRYV 64

Query:    64 YHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSLLDP 123
             Y DV+RV +  K +D S +Q Y  NS++V+F+NERPQ +   G G  ++C  C RSL  P
Sbjct:    65 YRDVLRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRGSG--NICITCDRSLQSP 122

Query:   124 FRFCSLGCKLEGI--KKNGEASFV 145
             + FC L CK+  +  ++ G + F+
Sbjct:   123 YLFCCLSCKISDVIMRQRGLSGFL 146

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

TAIR|locus:2015761 AT1G31040 [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 63/155 (40%), Positives = 96/155 (61%)

Query:     4 PPWLESLLSTSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQIRRSS 63
             P WLE L++ +FF+ C  H    ++E N++CL C     C +C  S H+ HP++Q+RR  
Sbjct:    19 PAWLEGLMAETFFSSCGIHETRRKSEKNVFCLLCCLSV-CPHCLPS-HRSHPLLQVRRYV 76

Query:    64 YHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSLLDP 123
             YHDVVR+++++K +D S VQ Y IN A+V+FLN+R Q +  V    S++C  C R L +P
Sbjct:    77 YHDVVRLSDLEKLIDCSYVQPYTINGAKVIFLNQRQQSRAKVS---SNVCFTCDRILQEP 133

Query:   124 FRFCSLGCKLEGIKKNGE-ASFVLSNKNEEEIPQE 157
             F FCSL CK++ +   G+  S +L   +E +   E
Sbjct:   134 FHFCSLSCKVDYLSYQGDDLSSILYRIDESDFTFE 168

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_I1220 hypothetical protein (209 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
pfam04640	72	pfam04640, PLATZ, PLATZ transcription factor	6e-39

>gnl|CDD|191051 pfam04640, PLATZ, PLATZ transcription factor

 Score =  128 bits (323), Expect = 6e-39
 Identities = 55/74 (74%), Positives = 64/74 (86%), Gaps = 2/74 (2%)

Query: 60  RRSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRS 119
           RRSSYHDVVRV++IQK +DIS VQTYVINSA+V+FLNERPQ +   GKG  ++CE C RS
Sbjct: 1   RRSSYHDVVRVSDIQKLIDISGVQTYVINSAKVVFLNERPQSRP--GKGSGNICETCDRS 58

Query: 120 LLDPFRFCSLGCKL 133
           LLDPFRFCSLGCK+
Sbjct: 59  LLDPFRFCSLGCKV 72

Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc dependant DNA binding proteins. They bind to AT rich sequences and functions in transcriptional repression. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
PF04640	72	PLATZ: PLATZ transcription factor; InterPro: IPR00	100.0
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.7
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	95.91
smart00336	42	BBOX B-Box-type zinc finger.	94.94
PF03884	57	DUF329: Domain of unknown function (DUF329); Inter	89.25
PRK01343	57	zinc-binding protein; Provisional	89.03
COG3024	65	Uncharacterized protein conserved in bacteria [Fun	87.2
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	87.0
PRK00418	62	DNA gyrase inhibitor; Reviewed	86.49

>PF04640 PLATZ: PLATZ transcription factor; InterPro: IPR006734 This family includes a conserved region in several uncharacterised plant proteins

Probab=100.00  E-value=1.5e-40  Score=244.31  Aligned_cols=72  Identities=67%  Similarity=1.139  Sum_probs=70.5

Q ss_pred             EeccccceeehhhHHhhhcccceeeEEECCeEEEEeeCCCCCCCCCCCCCCccccccccccCCCCeeeeeccee
Q 028583           60 RRSSYHDVVRVAEIQKALDISEVQTYVINSARVLFLNERPQPKGPVGKGVSHLCEICGRSLLDPFRFCSLGCKL  133 (207)
Q Consensus        60 RRssYhdVVRv~diqkllDiS~IQtYviNsakVVfLn~RPq~r~~~~k~~~~~C~~C~R~L~d~~rFCSl~CKv  133 (207)
                      |||||||||||+|||||||||+||||+|||+||||||+|||+++  ++++++.|++|+|+|+|+|+||||+|||
T Consensus         1 Rr~sY~dVVrv~di~kl~D~s~IQtY~iNs~kVVfLn~Rpq~~~--~~~~~~~C~~C~R~L~d~~~fCSl~CKv   72 (72)
T PF04640_consen    1 RRYSYHDVVRVSDIQKLLDCSGIQTYVINSAKVVFLNPRPQSRP--SKGSGNICETCHRSLQDPYRFCSLSCKV   72 (72)
T ss_pred             CcccccceEEHHHhHhhccccccEEEEeCCceEEEEccCCcCCC--CCCCCCccCCCCCCCCCCCeEEeeeEEC
Confidence            79999999999999999999999999999999999999999998  8889999999999999999999999996

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.70  E-value=0.00044  Score=44.54  Aligned_cols=38  Identities=34%  Similarity=0.879  Sum_probs=29.9

Q ss_pred             CCcCCCCCCCCCCceeeccCCCCccCCcccCCCCCCCCeeEE
Q 028583           18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQI   59 (207)
Q Consensus        18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQI   59 (207)
                      .|..|..   .+.++||.+|.. .+|..|....|++|.++.|
T Consensus         5 ~C~~H~~---~~~~~~C~~C~~-~~C~~C~~~~H~~H~~~~i   42 (42)
T PF00643_consen    5 KCPEHPE---EPLSLFCEDCNE-PLCSECTVSGHKGHKIVPI   42 (42)
T ss_dssp             B-SSTTT---SBEEEEETTTTE-EEEHHHHHTSTTTSEEEEC
T ss_pred             cCccCCc---cceEEEecCCCC-ccCccCCCCCCCCCEEeEC
Confidence            5888864   238899999985 9999997666999988764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=95.91  E-value=0.006  Score=38.05  Aligned_cols=37  Identities=22%  Similarity=0.602  Sum_probs=28.4

Q ss_pred             CCcCCCCCCCCCCceeeccCCCCccCCcccCCCCCCCCeeE
Q 028583           18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQ   58 (207)
Q Consensus        18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQ   58 (207)
                      .|+.|..   +.-.+||.+|.. .+|..|....|++|.++-
T Consensus         2 ~C~~H~~---~~~~~fC~~~~~-~iC~~C~~~~H~~H~~~~   38 (39)
T cd00021           2 LCDEHGE---EPLSLFCETDRA-LLCVDCDLSVHSGHRRVP   38 (39)
T ss_pred             CCCccCC---cceEEEeCccCh-hhhhhcChhhcCCCCEee
Confidence            4777743   235799999985 999999666699997764

>smart00336 BBOX B-Box-type zinc finger

Probab=94.94  E-value=0.023  Score=35.82  Aligned_cols=36  Identities=28%  Similarity=0.834  Sum_probs=28.0

Q ss_pred             CCcCCCCCCCCCCceeeccCCCCccCCcccCCCCCCCCee
Q 028583           18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVI   57 (207)
Q Consensus        18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~Hrvl   57 (207)
                      .|..|..   ..-.+||.+|.. .+|..|....|++|.++
T Consensus         5 ~C~~h~~---~~~~~~C~~c~~-~iC~~C~~~~H~~H~~~   40 (42)
T smart00336        5 KCDSHGD---EPAEFFCEECGA-LLCRTCDEAEHRGHTVV   40 (42)
T ss_pred             cCCCCCC---CceEEECCCCCc-ccccccChhhcCCCcee
Confidence            4777754   235799999995 99999965679999775

>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc

Probab=89.25  E-value=0.039  Score=39.28  Aligned_cols=29  Identities=45%  Similarity=0.966  Sum_probs=18.0

Q ss_pred             CccccccccccCC----CCe-eeeecceecceec
Q 028583          110 SHLCEICGRSLLD----PFR-FCSLGCKLEGIKK  138 (207)
Q Consensus       110 ~~~C~~C~R~L~d----~~r-FCSl~CKv~~~~~  138 (207)
                      +..|-+|++...-    +|+ |||-.||+..+.+
T Consensus         2 ~v~CP~C~k~~~~~~~n~~rPFCS~RCk~iDLg~   35 (57)
T PF03884_consen    2 TVKCPICGKPVEWSPENPFRPFCSERCKLIDLGR   35 (57)
T ss_dssp             EEE-TTT--EEE-SSSSS--SSSSHHHHHHHHS-
T ss_pred             cccCCCCCCeecccCCCCcCCcccHhhcccCHHH
Confidence            4579999998875    676 9999999876655

YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.

>PRK01343 zinc-binding protein; Provisional

Probab=89.03  E-value=0.12  Score=36.93  Aligned_cols=29  Identities=24%  Similarity=0.606  Sum_probs=23.2

Q ss_pred             CccccccccccCCCC-eeeeecceecceec
Q 028583          110 SHLCEICGRSLLDPF-RFCSLGCKLEGIKK  138 (207)
Q Consensus       110 ~~~C~~C~R~L~d~~-rFCSl~CKv~~~~~  138 (207)
                      ...|-+|++.....| -|||-.|+..++.+
T Consensus         9 ~~~CP~C~k~~~~~~rPFCS~RC~~iDLg~   38 (57)
T PRK01343          9 TRPCPECGKPSTREAYPFCSERCRDIDLNR   38 (57)
T ss_pred             CCcCCCCCCcCcCCCCcccCHHHhhhhHHH
Confidence            457999999987665 59999999766554

>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.20  E-value=0.17  Score=37.02  Aligned_cols=30  Identities=40%  Similarity=0.883  Sum_probs=23.4

Q ss_pred             CccccccccccCC----CCe-eeeecceecceecc
Q 028583          110 SHLCEICGRSLLD----PFR-FCSLGCKLEGIKKN  139 (207)
Q Consensus       110 ~~~C~~C~R~L~d----~~r-FCSl~CKv~~~~~~  139 (207)
                      +..|-+|++...-    +|| |||-.||+..+.+=
T Consensus         7 ~v~CP~Cgkpv~w~~~s~frPFCSkRCklIDLg~W   41 (65)
T COG3024           7 TVPCPTCGKPVVWGEESPFRPFCSKRCKLIDLGEW   41 (65)
T ss_pred             cccCCCCCCcccccccCCcCcchhHhhhhcchhhh
Confidence            4469999998864    665 99999998776653

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=87.00  E-value=0.13  Score=34.66  Aligned_cols=30  Identities=27%  Similarity=0.688  Sum_probs=24.4

Q ss_pred             CCcccccccccc---CCCCeeeeecceecceec
Q 028583          109 VSHLCEICGRSL---LDPFRFCSLGCKLEGIKK  138 (207)
Q Consensus       109 ~~~~C~~C~R~L---~d~~rFCSl~CKv~~~~~  138 (207)
                      ..+.|.+|+|-+   .+...|||-.|++.....
T Consensus         5 F~~yC~~Cdk~~~~~~~~~lYCSe~Cr~~D~~~   37 (43)
T PF12855_consen    5 FNDYCIVCDKQIDPPDDGSLYCSEECRLKDQEK   37 (43)
T ss_pred             hhhHHHHhhccccCCCCCccccCHHHHhHhhhc
Confidence            356799999999   667899999999865443

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>PRK00418 DNA gyrase inhibitor; Reviewed

Probab=86.49  E-value=0.19  Score=36.47  Aligned_cols=29  Identities=38%  Similarity=0.890  Sum_probs=22.4

Q ss_pred             CccccccccccC---C-CCe-eeeecceecceec
Q 028583          110 SHLCEICGRSLL---D-PFR-FCSLGCKLEGIKK  138 (207)
Q Consensus       110 ~~~C~~C~R~L~---d-~~r-FCSl~CKv~~~~~  138 (207)
                      ...|-+|++...   + +|+ |||-.||+..+.+
T Consensus         6 ~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDLg~   39 (62)
T PRK00418          6 TVNCPTCGKPVEWGEISPFRPFCSKRCQLIDLGE   39 (62)
T ss_pred             cccCCCCCCcccccCCCCcCCcccHHHHhhhHHH
Confidence            457999999874   3 575 9999999866554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	8e-04

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1 Length = 64

 Score = 35.6 bits (82), Expect = 8e-04
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 5/49 (10%)

Query: 12 STSFFTICPRHNDSPRNECNMYCLDCMSGAFCFYCR-SSRHKDHPVIQI 59
           +S   +C  H D      N+YCL C     C  C+    HK   V  +
Sbjct: 4  GSSGHPMCKEHEDEK---INIYCLTCEV-PTCSMCKVFGIHKACEVAPL 48

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	95.58
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	95.47
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	95.35
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	95.26
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	94.91
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	93.77
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	93.61
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	93.28
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	91.49
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	91.11
2w0t_A	43	Lethal(3)malignant brain tumor-like 2 protein; zin	90.0

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=95.58  E-value=0.003  Score=41.02  Aligned_cols=38  Identities=26%  Similarity=0.600  Sum_probs=30.1

Q ss_pred             CCcCCCCCCCCCCceeeccCCCCccCCcccCCCCCCCCeeEE
Q 028583           18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQI   59 (207)
Q Consensus        18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQI   59 (207)
                      .|..|...   .-++||.+|.. .+|..|....|++|+++-|
T Consensus         8 ~C~~H~~e---~l~lfC~~~~~-~iC~~C~~~~H~~H~~~~l   45 (50)
T 2yvr_A            8 YCNVHKHE---PLVLFCESCDT-LTCRDCQLNAHKDHQYQFL   45 (50)
T ss_dssp             BCSSSTTC---BCCEEETTTTE-EECHHHHHTTTTTCCEEET
T ss_pred             cCcCCCCC---CEEEEeCCCCE-EEecccCCCcCCCCceecH
Confidence            58888442   37799999984 9999997778999877653

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=95.47  E-value=0.01  Score=37.07  Aligned_cols=36  Identities=28%  Similarity=0.726  Sum_probs=28.9

Q ss_pred             CCcCCCCCCCCCCceeeccCCCCccCCcccC-CCCCCCCeeE
Q 028583           18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRS-SRHKDHPVIQ   58 (207)
Q Consensus        18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ   58 (207)
                      .|..|..    .-.+||.+|.. .+|..|.. ..|++|+++.
T Consensus         5 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~   41 (42)
T 1fre_A            5 KCSEHDE----RLKLYCKDDGT-LSCVICRDSLKHASHNFLP   41 (42)
T ss_dssp             CCCSSCS----SCCCCCCSSSS-SSCCTTSSCSSCTTCCCCC
T ss_pred             cchhhCC----eeeEEeCCCCe-EEeccCCCCCCCCCCcEec
Confidence            5888852    46799999984 99999965 6899998764

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=95.35  E-value=0.0061  Score=41.20  Aligned_cols=39  Identities=33%  Similarity=0.803  Sum_probs=29.9

Q ss_pred             cCCcCCCCCCCCCCceeeccCCCCccCCcccC-CCCCCCCeeEE
Q 028583           17 TICPRHNDSPRNECNMYCLDCMSGAFCFYCRS-SRHKDHPVIQI   59 (207)
Q Consensus        17 ~~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI   59 (207)
                      ..|..|...   .-++||.+|.. .+|..|.. ..|++|+++-|
T Consensus         9 ~~C~~H~~e---~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   48 (64)
T 2d8u_A            9 PMCKEHEDE---KINIYCLTCEV-PTCSMCKVFGIHKACEVAPL   48 (64)
T ss_dssp             CCCSSCTTC---CCCSEESSSCC-CCCSHHHHSSSTTSSCEECT
T ss_pred             CcCcCcCCC---ccceEcCcCCc-eeCccccCCCcCCCCCeeCH
Confidence            359999542   36799999984 99999954 68999876653

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=95.26  E-value=0.0059  Score=39.41  Aligned_cols=40  Identities=33%  Similarity=0.754  Sum_probs=31.0

Q ss_pred             ccCCcCCCCCCCCCCceeeccCCCCccCCccc-CCCCCCCCeeEE
Q 028583           16 FTICPRHNDSPRNECNMYCLDCMSGAFCFYCR-SSRHKDHPVIQI   59 (207)
Q Consensus        16 F~~C~~H~~~~knE~N~FCldC~~~~~C~~C~-~~~H~~HrvlQI   59 (207)
                      ...|..|..   ..-++||.+|. ..+|..|. ...|++|+++.|
T Consensus         6 ~~~C~~H~~---e~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l   46 (48)
T 3ddt_A            6 HPMCKEHED---EKINIYCLTCE-VPTCSMCKVFGIHKACEVAPL   46 (48)
T ss_dssp             SCBCSSSTT---SBCCEEETTTT-EEECHHHHHHSTTTTSCEEEC
T ss_pred             CCcCCCCCC---ccccEEcCCCC-eeEcccccCCCcCCCCcEEeC
Confidence            356998863   13679999998 49999995 468999988764

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=94.91  E-value=0.012  Score=38.66  Aligned_cols=37  Identities=27%  Similarity=0.870  Sum_probs=30.1

Q ss_pred             CCcCCCCCCCCCCceeeccCCCCccCCcccC-CCCCCCCeeEE
Q 028583           18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRS-SRHKDHPVIQI   59 (207)
Q Consensus        18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI   59 (207)
                      .|..|.    ..-.+||.+|.. .+|..|.. ..|++|+++-|
T Consensus        10 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   47 (53)
T 2did_A           10 LCPQHH----EALSLFCYEDQE-AVCLICAISHTHRAHTVVPL   47 (53)
T ss_dssp             BCTTTC----CBCCEEESSSCS-EECHHHHTSSTTTTSCEEEC
T ss_pred             cChhhC----CeeeEEeCCCCe-EEeccccCCCCCCCCcEeeH
Confidence            599995    246799999984 99999965 78999987765

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.77  E-value=0.031  Score=37.81  Aligned_cols=37  Identities=22%  Similarity=0.688  Sum_probs=30.3

Q ss_pred             CCcCCCCCCCCCCceeeccCCCCccCCcccC-CCCCCCCeeEE
Q 028583           18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRS-SRHKDHPVIQI   59 (207)
Q Consensus        18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI   59 (207)
                      .|..|..    ...+||.++.. .+|..|.. ..|++|+++.|
T Consensus        16 ~C~~H~e----~L~lfC~~d~~-~iC~~C~~s~eH~~H~~~~l   53 (59)
T 2yrg_A           16 HCARHGE----KLLLFCQEDGK-VICWLCERSQEHRGHHTFPT   53 (59)
T ss_dssp             BCTTTCC----BCCEEETTTCS-EECHHHHTSTTTTTCCEEEC
T ss_pred             cChhhCc----eeeeecCCCCc-EEecccCCCCcCCCCcEeeH
Confidence            5999963    46799999984 89999965 78999988765

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=93.61  E-value=0.02  Score=39.76  Aligned_cols=36  Identities=25%  Similarity=0.776  Sum_probs=28.9

Q ss_pred             CCcCCCCCCCCCCceeeccCCCCccCCcccCCCCCCCCeeE
Q 028583           18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQ   58 (207)
Q Consensus        18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQ   58 (207)
                      .|..|.    ..-++||.+|.. .+|..|....|++|+++-
T Consensus        20 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~H~~H~~~~   55 (72)
T 2csv_A           20 KCPVHG----KTMELFCQTDQT-CICYLCMFQEHKNHSTVT   55 (72)
T ss_dssp             BCTTTC----CBCCEEESSSCC-EECHHHHHTTTSSSCEEE
T ss_pred             cCcccC----CceEEEeCCCCe-EEccccCCCCCCCCCEec
Confidence            699994    246799999984 999999768899986654

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=93.28  E-value=0.019  Score=40.66  Aligned_cols=38  Identities=34%  Similarity=0.820  Sum_probs=30.1

Q ss_pred             CCcCCCCCCCCCCceeeccCCCCccCCcccC-CCCCCCCeeEE
Q 028583           18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRS-SRHKDHPVIQI   59 (207)
Q Consensus        18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQI   59 (207)
                      .|..|...   .-++||.+|.. .+|..|.. ..|++|+++-|
T Consensus        20 ~C~~H~~e---~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   58 (84)
T 2dja_A           20 TCLDHENE---KVNMYCVSDDQ-LICALCKLVGRHRDHQVASL   58 (84)
T ss_dssp             CCSSCSSS---CCCEEETTTTE-EECHHHHHTSTTTTCCBCCC
T ss_pred             cCcCcCCc---cccEEcCCCCc-eEcccCcCCCCCCCCCccCH
Confidence            59999531   36799999984 99999965 78999987665

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=91.49  E-value=0.044  Score=39.72  Aligned_cols=38  Identities=37%  Similarity=0.831  Sum_probs=29.7

Q ss_pred             cCCcCCCCCCCCCCceeeccCCCCccCCcccC-CCCCCCCeeE
Q 028583           17 TICPRHNDSPRNECNMYCLDCMSGAFCFYCRS-SRHKDHPVIQ   58 (207)
Q Consensus        17 ~~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ   58 (207)
                      ..|..|...   ..++||.+|.. .+|..|.. ..|++|+++-
T Consensus        60 ~~C~~H~~e---~l~~fC~~~~~-~iC~~C~~~~~H~~H~~~~   98 (101)
T 2jun_A           60 LMCLEHEDE---KVNMYCVTDDQ-LICALCKLVGRHRDHQVAA   98 (101)
T ss_dssp             CCCSSCSSS---CCCEEETTTTE-EECHHHHHHTTTSSSCBCC
T ss_pred             CcCcCcCCC---cceEECCCCCC-ccchhcCCCCCcCCCCeec
Confidence            368888531   36799999984 99999965 7899998764

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.11  E-value=0.019  Score=38.71  Aligned_cols=36  Identities=36%  Similarity=0.887  Sum_probs=28.7

Q ss_pred             CCcCCCCCCCCCCceeeccCCCCccCCcccC-CCCCCCCeeE
Q 028583           18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRS-SRHKDHPVIQ   58 (207)
Q Consensus        18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ   58 (207)
                      .|..|..    ...+||.+|.. .+|..|.. ..|++|+++.
T Consensus        20 ~C~~H~e----~L~lfC~~d~~-~iC~~C~~~~eH~~H~~~~   56 (57)
T 2egm_A           20 ICPKHQE----ALKLFCEVDEE-AICVVCRESRSHKQHSVVP   56 (57)
T ss_dssp             BCTTTCC----BCCEEETTTTE-EECHHHHHSHHHHSSCEEC
T ss_pred             cChhhCc----eeeEEcCCCCc-EEecccCCCCCCCCCcEec
Confidence            4998842    47799999984 89999964 6899998764

>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}

Probab=90.00  E-value=0.059  Score=35.54  Aligned_cols=26  Identities=35%  Similarity=0.852  Sum_probs=18.9

Q ss_pred             CCCCccccccccc-cCCC-----Ceeeeecce
Q 028583          107 KGVSHLCEICGRS-LLDP-----FRFCSLGCK  132 (207)
Q Consensus       107 k~~~~~C~~C~R~-L~d~-----~rFCSl~CK  132 (207)
                      ++....||.|++. +...     -||||++|-
T Consensus         3 ~~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca   34 (43)
T 2w0t_A            3 GSEPAVCEMCGIVGTREAFFSKTKRFCSVSCS   34 (43)
T ss_dssp             SCCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred             CCceehhhhhcCcchhhhhccCCcceechhhh
Confidence            3445689999984 4443     489999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d2dq5a1	47	g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapien	0.004

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.1 bits (73), Expect = 0.004
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 5/43 (11%)

Query: 18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRSS-RHKDHPVIQI 59
          +C  H D      NMYC+       C  C+   RH+DH V  +
Sbjct: 7  MCLEHEDEK---VNMYCVTDDQ-LICALCKLVGRHRDHQVAAL 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	96.52
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	96.36
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	96.21
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	95.85
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	95.72
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	95.54
d1lv3a_	65	Hypothetical zinc finger protein YacG {Escherichia	83.77

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00055  Score=44.19  Aligned_cols=38  Identities=34%  Similarity=0.808  Sum_probs=29.6

Q ss_pred             CCcCCCCCCCCCCceeeccCCCCccCCccc-CCCCCCCCeeEE
Q 028583           18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCR-SSRHKDHPVIQI   59 (207)
Q Consensus        18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~-~~~H~~HrvlQI   59 (207)
                      .|..|.+.   .-++||.+|.. ++|..|. ...|++|.+.-|
T Consensus         3 ~C~~H~~e---~l~~yC~~c~~-~iC~~C~~~~~Hk~H~v~~l   41 (51)
T d2d8ua1           3 MCKEHEDE---KINIYCLTCEV-PTCSMCKVFGIHKACEVAPL   41 (51)
T ss_dssp             CCSSCTTC---CCCSEESSSCC-CCCSHHHHSSSTTSSCEECT
T ss_pred             CCcccCcC---cceEEcCCCCc-eECccccCcCCcCcCcCcCH
Confidence            58888642   36799999985 9999995 468999876654

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.36  E-value=0.0015  Score=40.26  Aligned_cols=35  Identities=29%  Similarity=0.724  Sum_probs=28.5

Q ss_pred             CCcCCCCCCCCCCceeeccCCCCccCCcccC-CCCCCCCee
Q 028583           18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRS-SRHKDHPVI   57 (207)
Q Consensus        18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~Hrvl   57 (207)
                      .|+.|..    .-++||.+|. ..+|..|.. ..|++|.++
T Consensus         2 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~v~   37 (39)
T d1frea_           2 KCSEHDE----RLKLYCKDDG-TLSCVICRDSLKHASHNFL   37 (39)
T ss_dssp             CCCSSCS----SCCCCCCSSS-SSSCCTTSSCSSCTTCCCC
T ss_pred             CCcccCc----ceeEEcccCC-cEeeccCcCCCCcCCCcEe
Confidence            5888953    4779999998 499999965 579999875

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0006  Score=45.18  Aligned_cols=37  Identities=24%  Similarity=0.780  Sum_probs=30.2

Q ss_pred             CCcCCCCCCCCCCceeeccCCCCccCCcccCCCCCCCCeeEE
Q 028583           18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRSSRHKDHPVIQI   59 (207)
Q Consensus        18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~~~H~~HrvlQI   59 (207)
                      .|..|..    .-.+||.+|.. .+|..|....|++|.++.|
T Consensus        13 ~C~~H~e----~l~lyC~~c~~-~iC~~C~~~~H~~H~~~~l   49 (59)
T d2csva1          13 KCPVHGK----TMELFCQTDQT-CICYLCMFQEHKNHSTVTV   49 (59)
T ss_dssp             BCTTTCC----BCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred             chhhhCC----ccceECCCCCc-eECcccCcccCCCCCeeCH
Confidence            6999942    47799999984 9999997788999877654

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.00089  Score=45.17  Aligned_cols=38  Identities=37%  Similarity=0.831  Sum_probs=30.3

Q ss_pred             CCcCCCCCCCCC-CceeeccCCCCccCCcccC-CCCCCCCeeEEE
Q 028583           18 ICPRHNDSPRNE-CNMYCLDCMSGAFCFYCRS-SRHKDHPVIQIR   60 (207)
Q Consensus        18 ~C~~H~~~~knE-~N~FCldC~~~~~C~~C~~-~~H~~HrvlQIR   60 (207)
                      .|..|.+    | -++||.+|. ..+|..|.. ..|++|.+.-|.
T Consensus        13 ~C~~H~~----e~l~~fC~~C~-~~iC~~C~~~~~Hk~H~~~~i~   52 (71)
T d2djaa1          13 TCLDHEN----EKVNMYCVSDD-QLICALCKLVGRHRDHQVASLN   52 (71)
T ss_dssp             CCSSCSS----SCCCEEETTTT-EEECHHHHHTSTTTTCCBCCCC
T ss_pred             cCcccCC----ccceeEcCCCC-ceeccccccCCCCCCCcCcCHH
Confidence            4999964    4 589999998 499999954 579999877654

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.00068  Score=43.13  Aligned_cols=37  Identities=38%  Similarity=0.881  Sum_probs=28.8

Q ss_pred             CCcCCCCCCCCCCceeeccCCCCccCCccc-CCCCCCCCeeE
Q 028583           18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCR-SSRHKDHPVIQ   58 (207)
Q Consensus        18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~-~~~H~~HrvlQ   58 (207)
                      .|+.|.+   .+-++||.+|.. ++|..|. ...|++|.+.-
T Consensus         7 ~C~~H~~---e~l~~yC~~C~~-~iC~~C~~~~~H~~H~~~~   44 (47)
T d2dq5a1           7 MCLEHED---EKVNMYCVTDDQ-LICALCKLVGRHRDHQVAA   44 (47)
T ss_dssp             BCSSCTT---SBEEEEETTTTE-EEEHHHHHTSSTTSSCCCC
T ss_pred             cchhhCC---CcceEEcCCCCc-cCCccCcCcCCcCCCeEee
Confidence            3888864   136899999994 9999995 45899997653

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0032  Score=38.82  Aligned_cols=36  Identities=28%  Similarity=0.885  Sum_probs=29.0

Q ss_pred             CCcCCCCCCCCCCceeeccCCCCccCCcccC-CCCCCCCeeE
Q 028583           18 ICPRHNDSPRNECNMYCLDCMSGAFCFYCRS-SRHKDHPVIQ   58 (207)
Q Consensus        18 ~C~~H~~~~knE~N~FCldC~~~~~C~~C~~-~~H~~HrvlQ   58 (207)
                      .|+.|..    ..++||.+|.. .+|..|.. ..|++|+++=
T Consensus         3 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~v~p   39 (40)
T d2dida1           3 LCPQHHE----ALSLFCYEDQE-AVCLICAISHTHRAHTVVP   39 (40)
T ss_dssp             BCTTTCC----BCCEEESSSCS-EECHHHHTSSTTTTSCEEE
T ss_pred             cchhhCc----cceEEcccCCc-EeeccCcCCCCcCCCcEec
Confidence            5888843    57899999984 99999954 5899998863

>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Hypothetical zinc finger protein YacG
domain: Hypothetical zinc finger protein YacG
species: Escherichia coli [TaxId: 562]

Probab=83.77  E-value=0.062  Score=36.40  Aligned_cols=30  Identities=37%  Similarity=1.006  Sum_probs=22.7

Q ss_pred             CCccccccccccC----CCCe-eeeecceecceec
Q 028583          109 VSHLCEICGRSLL----DPFR-FCSLGCKLEGIKK  138 (207)
Q Consensus       109 ~~~~C~~C~R~L~----d~~r-FCSl~CKv~~~~~  138 (207)
                      .+-.|-+|++...    .+|+ |||-.||+..+.+
T Consensus         5 ~~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDLg~   39 (65)
T d1lv3a_           5 ITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGE   39 (65)
T ss_dssp             CEEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSC
T ss_pred             ceeeCCCCCCccccCCCCCcCCchhHhhhhccHHH
Confidence            4457999999873    2465 9999999876654