Citrus Sinensis ID: 028609

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MRCSSYGLIIPGSESRFLTTTTTPTTNKKPDRFPRIYPTSVSFGSLKVKAKLNDAAGGTATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRRQQNDDFQVRSEWRNRWQSQLSELKRRSMNKDAGGNISWAARMRRKRDGLSQEL
Secondary Structure (PSIPRED)
cccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccHHHHccccccccHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEcccccccccccccccccccccccccccccccccccccccEcccccccccccccccccHcccccHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccHcHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mrcssygliipgsesrfltttttpttnkkpdrfpriyptsvsfgslKVKAKlndaaggtaTATAVVdeskelsfydllgipesVSLVEIKQAYKQMARkyhpdvsppdrvEEYTQRFIRVQEAYEtlsdpglralydrdlsmgLHLAFSARRRQQNDDFQVRSEWRNRWQSQLSELKRRSmnkdaggniSWAARMRRKRDGLSQEL
Flexible Loop (DISEMBL)
mrcssygliipgsesrfltttttpttnkkpdrfpriyptsvsfgsLKVKAKLNDAAGGTATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARkyhpdvsppdrvEEYTQRFIRVQEayetlsdpglRALYDRDLSMGLHLAFSARRRQQNDDFQVRSEWRNRWQSqlselkrrsmnkdaggniswaarmrrkrdglsqel
Low Complexity Region (SEG)
MRCSSYGLIIPGSESRFLtttttpttNKKPDRFPRIYPTSVSFGSLKVKAKLNDaaggtatataVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRRQQNDDFQVRSEWRNRWQSQLSELKRRSMNKDAGGNISWAARMRRKRDGLSQEL
Disordered region (IsUnstruct)
************************************YPTSVSFGSLKVKAKLNDAAGGTATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKY*********VEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAFS*********************************************************
Disordered Region (DISOPRED)
**********PGSESRFL***************************************************KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDR*EEYTQRFIRVQEAYETLSDPGLRALYDRDLSM******************VRSEWRNRWQSQ**********************************
Disordered Region (DISEMBL)
MRCSSYGLIIPGSESRFLTTTTTPTTNKKPDRFPRIYPTSVSFGSLKVKAKLNDAAGGTATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRRQQNDDFQVRSEWRNRWQSQLSELKRRSMNKDAGGNISWAARMR**********
Disordered Region (DISPRO)
*RCSSYGLIIPGSESRFLTTTTTPTTNKKPDRFPRIYPTSV****LK*********************SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAFS*******DDFQVRSEWRNRWQSQLSELKR****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRCSSYGLIIPGSESRFLTTTTTPTTNKKPDRFPRIYPTSVSFGSLKVKAKLNDAAGGTATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRRQQNDDFQVRSEWRNRWQSQLSELKRRSMNKDAGGNISWAARMRRKRDGLSQEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
Q9SDN0	197	Chaperone protein dnaJ 20	yes	no	0.917	0.959	0.527	6e-50
A5IIT4	369	Chaperone protein DnaJ OS	yes	no	0.310	0.173	0.507	2e-12
B1LCI2	369	Chaperone protein DnaJ OS	yes	no	0.310	0.173	0.507	2e-12
Q9WZV3	369	Chaperone protein DnaJ OS	yes	no	0.310	0.173	0.507	2e-12
B9KAB9	370	Chaperone protein DnaJ OS	yes	no	0.310	0.172	0.492	4e-12
P25491	409	Mitochondrial protein imp	yes	no	0.349	0.176	0.48	5e-12
Q05646	370	Chaperone protein DnaJ OS	yes	no	0.300	0.167	0.507	6e-12
P53863	590	J protein JJJ1 OS=Sacchar	no	no	0.305	0.106	0.515	9e-12
O66921	376	Chaperone protein DnaJ 2	yes	no	0.364	0.199	0.439	1e-11
Q8RB67	384	Chaperone protein DnaJ OS	yes	no	0.305	0.164	0.492	1e-11

>sp|Q9SDN0|DNJ20_ARATH Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=2 SV=2

 Score =  197 bits (500), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 107/203 (52%), Positives = 135/203 (66%), Gaps = 14/203 (6%)

Query: 1   MRCSSYGLIIPGSESRFLTTTTTPTTNKKPDRFPRI--YPTSVSFGSLKVKAKLNDAAGG 58
           M+C     I+  +   F      P ++ +P   P    YPT   F S +++++L      
Sbjct: 1   MKCYKSSSILSTNHHPFFYKQQ-PISSLQPTSIPTTISYPTRTRFSSTRIQSRL------ 53

Query: 59  TATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFI 118
             T    V +S++LSFYDLLG+ ESV+L EIKQAYKQ+ARKYHPDVSPPDRVEEYT RFI
Sbjct: 54  --THDDPVKQSEDLSFYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFI 111

Query: 119 RVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRRQQNDDFQV--RSEWRNRWQSQLSEL 176
           RVQEAYETLSDP  R LYDRDLSMG   +FS RR+ + D   V  +SEW+ +WQ+QLS L
Sbjct: 112 RVQEAYETLSDPRRRVLYDRDLSMGFSFSFSGRRQNRYDQEVVEEKSEWKAKWQTQLSGL 171

Query: 177 KRRSMNKDAGGNISWAARMRRKR 199
           +RRS  KD    +SWAARMRR++
Sbjct: 172 RRRSNQKD-NNTMSWAARMRRQQ 193

Have a continuous role in plant development probably in the structural organization of compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|A5IIT4|DNAJ_THEP1 Chaperone protein DnaJ OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=dnaJ PE=3 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 48/65 (73%), Gaps = 1/65 (1%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+P   +  EIK+AYK++ +++HPD  P +R +E  QRF  +QEAYE LSDP  R
Sbjct: 8   YYEILGVPRDATQEEIKRAYKRLVKEWHPDRHPENR-KEAEQRFKEIQEAYEVLSDPQKR 66

Query: 134 ALYDR 138
           A+YDR
Sbjct: 67  AMYDR 71

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) (taxid: 390874)

>sp|B1LCI2|DNAJ_THESQ Chaperone protein DnaJ OS=Thermotoga sp. (strain RQ2) GN=dnaJ PE=3 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 48/65 (73%), Gaps = 1/65 (1%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+P   +  EIK+AYK++ +++HPD  P +R +E  QRF  +QEAYE LSDP  R
Sbjct: 8   YYEILGVPRDATQEEIKRAYKRLVKEWHPDRHPENR-KEAEQRFKEIQEAYEVLSDPQKR 66

Query: 134 ALYDR 138
           A+YDR
Sbjct: 67  AMYDR 71

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermotoga sp. (strain RQ2) (taxid: 126740)

>sp|Q9WZV3|DNAJ_THEMA Chaperone protein DnaJ OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=dnaJ PE=3 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 48/65 (73%), Gaps = 1/65 (1%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+P   +  EIK+AYK++ +++HPD  P +R +E  QRF  +QEAYE LSDP  R
Sbjct: 8   YYEILGVPRDATQEEIKRAYKRLVKEWHPDRHPENR-KEAEQRFKEIQEAYEVLSDPQKR 66

Query: 134 ALYDR 138
           A+YDR
Sbjct: 67  AMYDR 71

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

>sp|B9KAB9|DNAJ_THENN Chaperone protein DnaJ OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=dnaJ PE=3 SV=1

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 49/65 (75%), Gaps = 1/65 (1%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+P + +  EI++AYK++ +++HPD  P +R +E  QRF  +QEAYE LSDP  R
Sbjct: 8   YYEILGVPRNATQEEIRKAYKRLVKEWHPDRHPENR-KEAEQRFKEIQEAYEVLSDPQKR 66

Query: 134 ALYDR 138
           A+YDR
Sbjct: 67  AMYDR 71

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) (taxid: 309803)

>sp|P25491|MAS5_YEAST Mitochondrial protein import protein MAS5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDJ1 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)

Query: 70  KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129
           KE  FYD+LG+P + + VEIK+AY++ A KYHPD +P    EE  ++F     AYE LSD
Sbjct: 3   KETKFYDILGVPVTATDVEIKKAYRKCALKYHPDKNPS---EEAAEKFKEASAAYEILSD 59

Query: 130 PGLRALYDRDLSMGL 144
           P  R +YD+    GL
Sbjct: 60  PEKRDIYDQFGEDGL 74

Probably involved in mitochondrial protein import. Is also required for efficient translocation of pre-pro-alpha-factor. Involved in heme regulation of HAP1, as a component of the high-molecular-weight (HMC) complex.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q05646|DNAJ_ERYRH Chaperone protein DnaJ OS=Erysipelothrix rhusiopathiae GN=dnaJ PE=2 SV=1

 Score = 70.9 bits (172), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 46/65 (70%), Gaps = 3/65 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           FY++LG+ +S +  EIK+AY+Q+A+KYHPD++  D  E    +F  VQEAYE LSD   R
Sbjct: 7   FYEILGVSKSATDAEIKKAYRQLAKKYHPDINKEDGAE---AKFKEVQEAYEVLSDSQKR 63

Query: 134 ALYDR 138
           A YD+
Sbjct: 64  ANYDQ 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Erysipelothrix rhusiopathiae (taxid: 1648)

>sp|P53863|JJJ1_YEAST J protein JJJ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=JJJ1 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y+LLG+    S +E+K+AY++ A +YHPD +P D VEE TQ+F  ++ AYE LSDP  R
Sbjct: 5   YYELLGVETHASDLELKKAYRKKALQYHPDKNP-DNVEEATQKFAVIRAAYEVLSDPQER 63

Query: 134 ALYD 137
           A YD
Sbjct: 64  AWYD 67

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O66921|DNAJ2_AQUAE Chaperone protein DnaJ 2 OS=Aquifex aeolicus (strain VF5) GN=dnaJ2 PE=3 SV=1

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 7/82 (8%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+P + S  EIK+AY+++ RKYHPD+      EE   +F  + EAY+ LSDP  R
Sbjct: 9   YYEILGVPRNASQEEIKKAYRRLVRKYHPDICKKPECEE---KFKEINEAYQVLSDPEKR 65

Query: 134 ALYDRDLSMGLHLAFSARRRQQ 155
            LYD    M  H AF     QQ
Sbjct: 66  KLYD----MYGHAAFEGAGAQQ 83

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Aquifex aeolicus (strain VF5) (taxid: 224324)

>sp|Q8RB67|DNAJ_THETN Chaperone protein DnaJ OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=dnaJ PE=3 SV=1

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 47/65 (72%), Gaps = 2/65 (3%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
            Y++LG+  + S  EIK+AY+++A+KYHPD++P D+  E  Q+F  + EAYE LSDP  R
Sbjct: 6   LYEILGVDRNASQEEIKKAYRRLAKKYHPDLNPGDK--EAEQKFKEINEAYEILSDPQKR 63

Query: 134 ALYDR 138
           A YD+
Sbjct: 64  AQYDQ 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
224128988	196	predicted protein [Populus trichocarpa]	0.927	0.974	0.606	3e-62
118486703	196	unknown [Populus trichocarpa]	0.927	0.974	0.601	6e-62
224060341	197	predicted protein [Populus trichocarpa]	0.927	0.969	0.589	1e-59
255553998	201	Chaperone protein dnaJ 20, chloroplast p	0.936	0.960	0.588	9e-58
356512453	184	PREDICTED: chaperone protein dnaJ 20, ch	0.878	0.983	0.574	2e-53
225433479	216	PREDICTED: chaperone protein dnaJ 20, ch	0.927	0.884	0.573	9e-53
351721851	186	DnaJ-like protein [Glycine max] gi|14642	0.873	0.967	0.568	1e-52
113374278	177	DnaJ-like protein isoform [Solanum phure	0.733	0.853	0.645	7e-52
297804938	197	hypothetical protein ARALYDRAFT_493532 [	0.917	0.959	0.536	5e-50
6691127	197	DnaJ-like protein [Arabidopsis thaliana]	0.917	0.959	0.532	9e-49

>gi|224128988|ref|XP_002328862.1| predicted protein [Populus trichocarpa] gi|222839292|gb|EEE77629.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 128/211 (60%), Positives = 157/211 (74%), Gaps = 20/211 (9%)

Query: 1   MRCSSYGLIIPGSES-RFLTTTTTPTTNKKPDRFPRIYPTS-VSFGSLKVKAKLNDAAGG 58
           MRC  YGL+IPGSE+ RF  +   P     P+   R+   S +  GS K KA +N   G 
Sbjct: 1   MRC--YGLMIPGSETTRFYQSPLKP----DPNPILRVKTVSRIPIGSFKTKATINAKVGA 54

Query: 59  TATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFI 118
                    E  ++SFY+LLGI ES +L EIKQAYKQ+ARKYHPDVSPPDRVEEYT+RFI
Sbjct: 55  ---------ELGQMSFYELLGITESGTLPEIKQAYKQLARKYHPDVSPPDRVEEYTRRFI 105

Query: 119 RVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRR---QQNDDFQVRSEWRNRWQSQLSE 175
           RVQEAYETLSDP +R +YDRD++ GLHLAFSARRR   Q +++ + R+EW+NRWQSQLSE
Sbjct: 106 RVQEAYETLSDPRMREIYDRDMAKGLHLAFSARRRYPHQNDEEMEERTEWKNRWQSQLSE 165

Query: 176 LKRRSMNKDAGGNISWAARMRRKRDGLSQEL 206
           LKRRS NK AGG++SWAARMRR+R+GLS++L
Sbjct: 166 LKRRSTNKGAGGSMSWAARMRRQREGLSEDL 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486703|gb|ABK95188.1| unknown [Populus trichocarpa]

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 127/211 (60%), Positives = 157/211 (74%), Gaps = 20/211 (9%)

Query: 1   MRCSSYGLIIPGSES-RFLTTTTTPTTNKKPDRFPRIYPTS-VSFGSLKVKAKLNDAAGG 58
           MRC  YGL+IPGSE+ RF  +   P     P+   R+   S +  GS K KA +N   G 
Sbjct: 1   MRC--YGLMIPGSETTRFYQSPLKP----DPNPILRVKTVSRIPIGSFKTKATINAKVGA 54

Query: 59  TATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFI 118
                    E  ++SFY+LLGI ES +L EIKQAYKQ+ARKYHPDVSPPDRVEEYT+RFI
Sbjct: 55  ---------ELGQMSFYELLGITESGTLPEIKQAYKQLARKYHPDVSPPDRVEEYTRRFI 105

Query: 119 RVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRR---QQNDDFQVRSEWRNRWQSQLSE 175
           RVQEAYETLSDP +R +YDRD++ GLHLAFSARRR   Q +++ + R+EW+NRWQSQLSE
Sbjct: 106 RVQEAYETLSDPRMREIYDRDMAKGLHLAFSARRRYPHQNDEEMEERTEWKNRWQSQLSE 165

Query: 176 LKRRSMNKDAGGNISWAARMRRKRDGLSQEL 206
           LK+RS NK AGG++SWAARMRR+R+GLS++L
Sbjct: 166 LKKRSTNKGAGGSMSWAARMRRQREGLSEDL 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060341|ref|XP_002300151.1| predicted protein [Populus trichocarpa] gi|118487270|gb|ABK95463.1| unknown [Populus trichocarpa] gi|222847409|gb|EEE84956.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/212 (58%), Positives = 154/212 (72%), Gaps = 21/212 (9%)

Query: 1   MRCSSYGLIIPGSES-RFLTTTTTPTTNKKPDRFPRIYP-TSVSFGSLKVKAKLNDAAGG 58
           MRC  YGL+IPGSE+ RF  +   P ++       R  P T +  GS K K  +N     
Sbjct: 1   MRC--YGLMIPGSETARFYPSPLKPESSP----ILRFKPVTRIPIGSFKTKTTIN----- 49

Query: 59  TATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFI 118
                 +  E  +++ Y LLGIPES +  EIKQAYKQ+ARKYHPDVSPP RVEEYT+RFI
Sbjct: 50  ----AKITTELGQMTLYQLLGIPESGTFPEIKQAYKQLARKYHPDVSPPGRVEEYTRRFI 105

Query: 119 RVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRR---QQNDDFQVRSEWRNRWQSQLSE 175
           RVQEAYETLSDP ++ +YDRD++ GLHLAFSARRR   Q +++ + RSEW+N WQSQLSE
Sbjct: 106 RVQEAYETLSDPRMKEIYDRDMARGLHLAFSARRRYPYQNDEEMEGRSEWKNCWQSQLSE 165

Query: 176 LKRRSMNKDAGG-NISWAARMRRKRDGLSQEL 206
           LKRRSMNKDAGG ++SWAARMRR+R+GLS+EL
Sbjct: 166 LKRRSMNKDAGGSSMSWAARMRRRREGLSEEL 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553998|ref|XP_002518039.1| Chaperone protein dnaJ 20, chloroplast precursor, putative [Ricinus communis] gi|223542635|gb|EEF44172.1| Chaperone protein dnaJ 20, chloroplast precursor, putative [Ricinus communis]

 Score =  228 bits (582), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 126/214 (58%), Positives = 160/214 (74%), Gaps = 21/214 (9%)

Query: 1   MRCSSYGLIIPG-SESRFL-----TTTTTPTTNKKPDRFPRIYP-TSVSFGSLKVKAKLN 53
           M C++  L++PG S++ +      +++TTP T  KP  F R+ P T     S K KA ++
Sbjct: 1   MHCTN--LMLPGGSDTVYFFHPSSSSSTTPITKSKPGPFLRLKPVTRFPMSSFKTKAAVS 58

Query: 54  DAAGGTATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEY 113
           D              +K+LSFY+LLGIPES SL++IKQAYKQ+ARKYHPDVSPPDRV EY
Sbjct: 59  DRIA-----------TKDLSFYELLGIPESGSLIDIKQAYKQLARKYHPDVSPPDRVHEY 107

Query: 114 TQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRRQQND-DFQVRSEWRNRWQSQ 172
           TQRFI+VQEAYETLSDP  RA YDRD++ GLHLAFSARRR Q+D + +V S+W+NRW++Q
Sbjct: 108 TQRFIQVQEAYETLSDPRRRATYDRDMARGLHLAFSARRRYQSDEEVEVSSDWKNRWEAQ 167

Query: 173 LSELKRRSMNKDAGGNISWAARMRRKRDGLSQEL 206
           LSELKRRSMNKD+  N+SWAARMRR+R+ LS+EL
Sbjct: 168 LSELKRRSMNKDSEENMSWAARMRRQRERLSKEL 201

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512453|ref|XP_003524933.1| PREDICTED: chaperone protein dnaJ 20, chloroplastic-like [Glycine max]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 119/207 (57%), Positives = 145/207 (70%), Gaps = 26/207 (12%)

Query: 1   MRCSSYGLIIPGSESRFLTTTTTPTTNKKPDRFPRIYPTSVSFGSLKVKAKLNDAAGGTA 60
           M+C  YGL +PGS       T +P    +P+R   I  T ++F     KA LN   G   
Sbjct: 1   MQC--YGLTVPGS-----VPTVSPVF-LRPNR--PIIATRIAFP----KATLNKNQGFVV 46

Query: 61  TATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRV 120
                     ELSFY+LLGIPESVS+ EIK AYKQ+ARKYHPDVSPP RVEEYT+RFI+V
Sbjct: 47  ----------ELSFYELLGIPESVSVTEIKNAYKQLARKYHPDVSPPGRVEEYTKRFIQV 96

Query: 121 QEAYETLSDPGLRALYDRDLSMGLHLAFSARRRQQNDDFQV--RSEWRNRWQSQLSELKR 178
           QEAYETLSDP  RA+YD+D++ G++LAF+ARRR    D  V  +SEW+ RW+SQLSELKR
Sbjct: 97  QEAYETLSDPSRRAMYDKDMARGINLAFNARRRYNYHDQVVEQKSEWKVRWKSQLSELKR 156

Query: 179 RSMNKDAGGNISWAARMRRKRDGLSQE 205
           RS +KD GGN+SWAARMR++RD LS E
Sbjct: 157 RSNSKDVGGNMSWAARMRQQRDELSNE 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433479|ref|XP_002264154.1| PREDICTED: chaperone protein dnaJ 20, chloroplastic [Vitis vinifera] gi|147777520|emb|CAN64811.1| hypothetical protein VITISV_024996 [Vitis vinifera] gi|298205225|emb|CBI17284.3| unnamed protein product [Vitis vinifera]

 Score =  212 bits (539), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 125/218 (57%), Positives = 145/218 (66%), Gaps = 27/218 (12%)

Query: 1   MRCSSYGLIIP-GSESRFL--TTTTTPTTNKKPDRFPR----------IYPTSVSFGSLK 47
           MRC  YGLI   GSE+RF      + PTT   PD   R          + P    + SLK
Sbjct: 1   MRC--YGLISGIGSEARFSFPANHSLPTTPILPDSCSRLSFRPFGPITVSPVRARYASLK 58

Query: 48  VKAKLNDAAGGTATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPP 107
            KA +ND       A A       +SFY+LLGIPES +L+EIKQAYK +ARKYHPDVSPP
Sbjct: 59  TKATINDEFLTEPEAAA-------MSFYELLGIPESGTLLEIKQAYKSLARKYHPDVSPP 111

Query: 108 DRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRRQQNDDFQV-RSEWR 166
            RV+EYT+RFI VQEAYETLSDP  RALYDRDL+MGLHLAFSAR+    D+  V + EWR
Sbjct: 112 GRVKEYTRRFIWVQEAYETLSDPQRRALYDRDLAMGLHLAFSARKTYHRDEGMVAQKEWR 171

Query: 167 NRWQSQLSELKRRSMNKD----AGGNISWAARMRRKRD 200
           NRW+ QLSELKRRSMNKD    AG N+SW ARMR +R+
Sbjct: 172 NRWEGQLSELKRRSMNKDAAAAAGANMSWGARMRMQRN 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721851|ref|NP_001235176.1| DnaJ-like protein [Glycine max] gi|146424720|dbj|BAF62127.1| DnaJ-like protein [Glycine max]

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 116/204 (56%), Positives = 144/204 (70%), Gaps = 24/204 (11%)

Query: 5   SYGLIIPGSESRFLTTTTTPTTNKKPDRFPRIYPTS-VSFGSLKVKAKLNDAAGGTATAT 63
           SYGL +PGS+ RF   T +    + P+R     P + ++F    +K   ND         
Sbjct: 3   SYGLTVPGSDHRFCVPTVSQVFFR-PNR-----PINRIAFPKATLK---NDGF------- 46

Query: 64  AVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEA 123
            VVD    LSFYDLLGIPES S+ EIK AYKQ+ARKYHPDVSPP RVEEYT+RFI+VQEA
Sbjct: 47  -VVD----LSFYDLLGIPESGSVTEIKNAYKQLARKYHPDVSPPGRVEEYTKRFIQVQEA 101

Query: 124 YETLSDPGLRALYDRDLSMGLHLAFSARRRQQNDD--FQVRSEWRNRWQSQLSELKRRSM 181
           YETLSDP  RA+YD+D++ G++ AF+ARRR    D   + +SEW+ RW+SQLSELKR+S 
Sbjct: 102 YETLSDPSRRAMYDKDMAKGINFAFNARRRYNYHDQVVEQKSEWKARWKSQLSELKRKSN 161

Query: 182 NKDAGGNISWAARMRRKRDGLSQE 205
            KDAGGN+SWAARMR++RD LS E
Sbjct: 162 GKDAGGNMSWAARMRQQRDELSNE 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113374278|gb|ABI34703.1| DnaJ-like protein isoform [Solanum phureja]

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 104/161 (64%), Positives = 127/161 (78%), Gaps = 10/161 (6%)

Query: 44  GSLKVKAKLNDAAGGTATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPD 103
           GSL+V +KLN+          V++ S+  SFY+LLGI E+VSL+EIKQAYKQ+ARKYHPD
Sbjct: 25  GSLRVHSKLNNN---------VIEISESKSFYELLGIQETVSLLEIKQAYKQLARKYHPD 75

Query: 104 VSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRRQQNDD-FQVR 162
           VSPP RVEE TQRFIRVQEAYETLSDP  R +YD+D+S GLHLAFS RR+ QND+  +  
Sbjct: 76  VSPPGRVEENTQRFIRVQEAYETLSDPKSRDMYDKDMSKGLHLAFSPRRKCQNDESMEDT 135

Query: 163 SEWRNRWQSQLSELKRRSMNKDAGGNISWAARMRRKRDGLS 203
            EW+NRW SQLSELKRR+ +KD+G N+SW ARMRR+R+  S
Sbjct: 136 GEWKNRWHSQLSELKRRNTHKDSGNNMSWGARMRRQRNETS 176

Source: Solanum phureja

Species: Solanum phureja

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804938|ref|XP_002870353.1| hypothetical protein ARALYDRAFT_493532 [Arabidopsis lyrata subsp. lyrata] gi|297316189|gb|EFH46612.1| hypothetical protein ARALYDRAFT_493532 [Arabidopsis lyrata subsp. lyrata]

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 109/203 (53%), Positives = 138/203 (67%), Gaps = 14/203 (6%)

Query: 1   MRCSSYGLIIPGSESRFLTTTTTPTTNKKPDRFPRI--YPTSVSFGSLKVKAKLNDAAGG 58
           M+C     I+  +   F      P ++ +P  FP    YPT   F S +++++L      
Sbjct: 1   MKCYKSSSILSTNHHPFFYKQQ-PISSLQPSSFPSTLSYPTRTRFSSTRIQSRL------ 53

Query: 59  TATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFI 118
             T    V +SK+LSFYDLLG+ ESV+L EIKQAYKQ+ARKYHPDVSPPDRVEEYT RFI
Sbjct: 54  --THDDPVKQSKDLSFYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFI 111

Query: 119 RVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRRQQNDDFQV--RSEWRNRWQSQLSEL 176
           RVQEAYETLSDP  R LYDRDLSMG   +FS +RR + D+  V  +SEW+ +WQ+QLS L
Sbjct: 112 RVQEAYETLSDPRRRVLYDRDLSMGFSFSFSGKRRNRYDEEVVEEKSEWKAKWQTQLSGL 171

Query: 177 KRRSMNKDAGGNISWAARMRRKR 199
           +RRS  KD   ++SWAARMRR++
Sbjct: 172 RRRSNQKD-NNSMSWAARMRRQQ 193

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6691127|gb|AAF24498.1|AF214107_1 DnaJ-like protein [Arabidopsis thaliana]

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 108/203 (53%), Positives = 135/203 (66%), Gaps = 14/203 (6%)

Query: 1   MRCSSYGLIIPGSESRFLTTTTTPTTNKKPDRFPRI--YPTSVSFGSLKVKAKLNDAAGG 58
           M+C     I+  +   F      P ++ +P   P    YPT   F S +++++L      
Sbjct: 1   MKCYKSSSILSTNHHPFFYKQQ-PISSLQPTSIPTTISYPTRTRFSSTRIQSRL------ 53

Query: 59  TATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFI 118
             T    V +S++LSFYDLLG+ ESV+L EIKQAYKQ+ARKYHPDVSPPDRVEEYT RFI
Sbjct: 54  --THDDPVKQSEDLSFYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFI 111

Query: 119 RVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRRQQNDDFQV--RSEWRNRWQSQLSEL 176
           RVQEAYETLSDP  R LYDRDLSMG   +FS RRR + D   V  +SEW+ +WQ+QLS L
Sbjct: 112 RVQEAYETLSDPRRRVLYDRDLSMGFSFSFSGRRRNRYDQEVVEEKSEWKAKWQTQLSGL 171

Query: 177 KRRSMNKDAGGNISWAARMRRKR 199
           +RRS  KD    +SWAARMRR++
Sbjct: 172 RRRSNQKD-NNTMSWAARMRRQQ 193

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2119465	197	J20 "AT4G13830" [Arabidopsis t	0.747	0.781	0.6	7.9e-46
GENEDB_PFALCIPARUM|MAL13P1.162	247	MAL13P1.162 "DNAJ-like protein	0.349	0.291	0.465	4.4e-13
UNIPROTKB|C0H5E9	247	MAL13P1.162 "DNAJ like protein	0.349	0.291	0.465	4.4e-13
GENEDB_PFALCIPARUM|PFL0565w	244	PFL0565w "heat shock protein D	0.330	0.278	0.434	5.6e-13
UNIPROTKB|Q7KQK3	244	PFL0565w "Heat shock protein D	0.330	0.278	0.434	5.6e-13
ZFIN|ZDB-GENE-040115-3	474	dnaja3b "DnaJ (Hsp40) homolog,	0.514	0.223	0.381	2.5e-12
UNIPROTKB|Q9UBS3	223	DNAJB9 "DnaJ homolog subfamily	0.592	0.547	0.302	3.1e-12
SGD|S000005008	409	YDJ1 "Type I HSP40 co-chaperon	0.320	0.161	0.492	3.8e-12
TIGR_CMR|DET_1411	330	DET_1411 "DnaJ family protein"	0.330	0.206	0.442	4.6e-12
WB|WBGene00001034	395	dnj-16 [Caenorhabditis elegans	0.334	0.174	0.452	7.8e-12

TAIR|locus:2119465 J20 "AT4G13830" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 99/165 (60%), Positives = 121/165 (73%)

Query:    37 YPTSVSFGSLKVKAKLNDXXXXXXXXXXVVDESKELSFYDLLGIPESVSLVEIKQAYKQM 96
             YPT   F S +++++L             V +S++LSFYDLLG+ ESV+L EIKQAYKQ+
Sbjct:    38 YPTRTRFSSTRIQSRLTHDDP--------VKQSEDLSFYDLLGVTESVTLPEIKQAYKQL 89

Query:    97 ARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRRQQN 156
             ARKYHPDVSPPDRVEEYT RFIRVQEAYETLSDP  R LYDRDLSMG   +FS RR+ + 
Sbjct:    90 ARKYHPDVSPPDRVEEYTDRFIRVQEAYETLSDPRRRVLYDRDLSMGFSFSFSGRRQNRY 149

Query:   157 DDFQV--RSEWRNRWQSQLSELKRRSMNKDAGGNISWAARMRRKR 199
             D   V  +SEW+ +WQ+QLS L+RRS  KD    +SWAARMRR++
Sbjct:   150 DQEVVEEKSEWKAKWQTQLSGLRRRSNQKD-NNTMSWAARMRRQQ 193

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

GENEDB_PFALCIPARUM|MAL13P1.162 MAL13P1.162 "DNAJ-like protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 34/73 (46%), Positives = 50/73 (68%)

Query:    73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
             +FYD+L I +  +  EIKQAY+++A KYHPD +P +R +E  Q+F  + EAYETLSD   
Sbjct:    43 NFYDILNIKKDSNKNEIKQAYRKLALKYHPDRNPNNR-KESEQKFREITEAYETLSDDNK 101

Query:   133 RALYDRDLSMGLH 145
             + +YD  L+ G +
Sbjct:   102 KKMYDSQLNNGFY 114

GO:0006986 "response to unfolded protein" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|C0H5E9 MAL13P1.162 "DNAJ like protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 34/73 (46%), Positives = 50/73 (68%)

Query:    73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
             +FYD+L I +  +  EIKQAY+++A KYHPD +P +R +E  Q+F  + EAYETLSD   
Sbjct:    43 NFYDILNIKKDSNKNEIKQAYRKLALKYHPDRNPNNR-KESEQKFREITEAYETLSDDNK 101

Query:   133 RALYDRDLSMGLH 145
             + +YD  L+ G +
Sbjct:   102 KKMYDSQLNNGFY 114

GO:0006986 "response to unfolded protein" evidence=ISS

GENEDB_PFALCIPARUM|PFL0565w PFL0565w "heat shock protein DNAJ homologue Pfj4" [Plasmodium falciparum (taxid:5833)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 30/69 (43%), Positives = 49/69 (71%)

Query:    69 SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLS 128
             S+ +++Y++LG+P+   L  IK++Y+ +A K+HPD +P ++ E  T+RF ++ EAYE LS
Sbjct:     2 SRRVNYYEVLGVPQDADLTVIKKSYRTLAMKWHPDKNPNNKAEA-TERFKQISEAYEVLS 60

Query:   129 DPGLRALYD 137
             DP  R  YD
Sbjct:    61 DPKRRRKYD 69

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006986 "response to unfolded protein" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q7KQK3 PFL0565w "Heat shock protein DNAJ homologue Pfj4" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 30/69 (43%), Positives = 49/69 (71%)

Query:    69 SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLS 128
             S+ +++Y++LG+P+   L  IK++Y+ +A K+HPD +P ++ E  T+RF ++ EAYE LS
Sbjct:     2 SRRVNYYEVLGVPQDADLTVIKKSYRTLAMKWHPDKNPNNKAEA-TERFKQISEAYEVLS 60

Query:   129 DPGLRALYD 137
             DP  R  YD
Sbjct:    61 DPKRRRKYD 69

GO:0005575 "cellular_component" evidence=ND

GO:0006986 "response to unfolded protein" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=ISS

ZFIN|ZDB-GENE-040115-3 dnaja3b "DnaJ (Hsp40) homolog, subfamily A, member 3B" [Danio rerio (taxid:7955)]

 Score = 173 (66.0 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 45/118 (38%), Positives = 64/118 (54%)

Query:    70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129
             ++  FY++LG+P + S  EIK+AY Q+A+KYHPD +P D   +  ++F ++ EAYETLSD
Sbjct:    83 RQQDFYEVLGVPRTASQKEIKKAYYQLAKKYHPDTNPDD--PDAKEKFAKLAEAYETLSD 140

Query:   130 PGLRALYDRDLSMGLHLAFSARRRQQNDDFQVRSEWRNRWQSQLSELKRRSMNKDAGG 187
                R  YD   S G   + S   +QQ         WR        EL R+   + AGG
Sbjct:   141 ELKRKQYDTYGSAGP--SASGTGQQQY--------WRGSANVDPEELFRKIFGEFAGG 188

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9UBS3 DNAJB9 "DnaJ homolog subfamily B member 9" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 39/129 (30%), Positives = 66/129 (51%)

Query:    73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
             S+YD+LG+P+S S  +IK+A+ ++A KYHPD +     E    +F  + EAYETLSD   
Sbjct:    26 SYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEA---KFREIAEAYETLSDANR 82

Query:   133 RALYDRDLSMGLHLAFSARRRQQNDDFQVRSEWRNRWQSQLSELKRRSMNKDAGGNISWA 192
             R  YD   ++G H AF++ + Q+         +   +     +      N++ G    + 
Sbjct:    83 RKEYD---TLG-HSAFTSGKGQRGSGSSFEQSFNFNFDDLFKDFGFFGQNQNTGSKKRFE 138

Query:   193 ARMRRKRDG 201
                + ++DG
Sbjct:   139 NHFQTRQDG 147

GO:0005730 "nucleolus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0051787 "misfolded protein binding" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

SGD|S000005008 YDJ1 "Type I HSP40 co-chaperone" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 170 (64.9 bits), Expect = 3.8e-12, P = 3.8e-12
 Identities = 34/69 (49%), Positives = 46/69 (66%)

Query:    70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129
             KE  FYD+LG+P + + VEIK+AY++ A KYHPD +P    EE  ++F     AYE LSD
Sbjct:     3 KETKFYDILGVPVTATDVEIKKAYRKCALKYHPDKNPS---EEAAEKFKEASAAYEILSD 59

Query:   130 PGLRALYDR 138
             P  R +YD+
Sbjct:    60 PEKRDIYDQ 68

GO:0006950 "response to stress" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;IDA

GO:0072380 "TRC complex" evidence=IDA

GO:0006457 "protein folding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA;IDA

GO:0006810 "transport" evidence=IEA

GO:0045047 "protein targeting to ER" evidence=IMP

GO:0006458 "'de novo' protein folding" evidence=IMP

GO:0009408 "response to heat" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0042026 "protein refolding" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IGI;IMP

GO:0001671 "ATPase activator activity" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=IMP

TIGR_CMR|DET_1411 DET_1411 "DnaJ family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 167 (63.8 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 31/70 (44%), Positives = 50/70 (71%)

Query:    69 SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLS 128
             + E + Y+ LG+ ++ S  EIK+AY+++ARKYHPD++P D+  E T  F ++ +AYE L+
Sbjct:     2 ANEKNLYETLGVAKTASADEIKKAYRKLARKYHPDLNPGDKTAEET--FKKINQAYEVLN 59

Query:   129 DPGLRALYDR 138
             +P  RA YD+
Sbjct:    60 NPENRAKYDK 69

GO:0006457 "protein folding" evidence=ISS

GO:0030544 "Hsp70 protein binding" evidence=ISS

WB|WBGene00001034 dnj-16 [Caenorhabditis elegans (taxid:6239)]

 Score = 151 (58.2 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
 Identities = 33/73 (45%), Positives = 44/73 (60%)

Query:    67 DESK--ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAY 124
             D+ K  E+ FY LLG+ +  S  EIK AY+++A KYHPD +P D   +  + F +V  AY
Sbjct:    26 DQPKVSEMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQ--EEFKKVSIAY 83

Query:   125 ETLSDPGLRALYD 137
               LSDP  R  YD
Sbjct:    84 SVLSDPNKRRQYD 96

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SDN0	DNJ20_ARATH	No assigned EC number	0.5270	0.9174	0.9593	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_880038	SubName- Full=Putative uncharacterized protein; (196 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.VI.26.1	annotation not avaliable (325 aa)			•						0.504
	grail3.0261001401	hypothetical protein (124 aa)			•						0.503
	eugene3.02610008	hypothetical protein (132 aa)			•						0.503
	eugene3.00860035	hypothetical protein (705 aa)			•						0.502
	eugene3.00770061	hypothetical protein (277 aa)			•						0.502
	eugene3.00130164	hypothetical protein (660 aa)			•						0.502
	eugene3.00120231	hypothetical protein (668 aa)			•						0.502
	estExt_fgenesh4_pm.C_LG_I0291	SubName- Full=Putative uncharacterized protein; (666 aa)			•						0.502
	estExt_fgenesh4_pg.C_1500058	hypothetical protein (706 aa)			•						0.502
	estExt_Genewise1_v1.C_LG_III0234	hypothetical protein (666 aa)			•						0.502

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
pfam00226	63	pfam00226, DnaJ, DnaJ domain	2e-22
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	4e-22
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	4e-21
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	3e-19
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	6e-19
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	1e-17
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	4e-17
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	7e-17
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-16
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	2e-16
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	6e-16
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	2e-15
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	6e-15
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	6e-14
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	9e-14
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-13
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	2e-13
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	3e-13
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	3e-13
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	3e-13
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	5e-13
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	5e-13
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	7e-13
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	1e-12
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	1e-12
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	2e-12
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	2e-12
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	5e-12
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	5e-12
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	3e-11
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	8e-11
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	6e-10
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	9e-10
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	1e-09
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	6e-09
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	3e-08
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	8e-08
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	3e-05
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	6e-05
PRK01356	166	PRK01356, hscB, co-chaperone HscB; Provisional	7e-05
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	2e-04
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	2e-04
PHA02624	647	PHA02624, PHA02624, large T antigen; Provisional	4e-04
PRK03578	176	PRK03578, hscB, co-chaperone HscB; Provisional	0.004
PHA03102	153	PHA03102, PHA03102, Small T antigen; Reviewed	0.004

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 85.7 bits (213), Expect = 2e-22
 Identities = 31/64 (48%), Positives = 44/64 (68%), Gaps = 2/64 (3%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+P   S  EIK+AY+++A KYHPD +P D      ++F  + EAYE LSDP  R
Sbjct: 2   YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGD--PAAEEKFKEINEAYEVLSDPEKR 59

Query: 134 ALYD 137
           A+YD
Sbjct: 60  AIYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 91.9 bits (229), Expect = 4e-22
 Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 2/69 (2%)

Query: 70  KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129
            +  +Y++LG+ +  S  EIK+AY+++A+KYHPD +P D  +E  ++F  + EAYE LSD
Sbjct: 2   AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD--KEAEEKFKEINEAYEVLSD 59

Query: 130 PGLRALYDR 138
           P  RA YD+
Sbjct: 60  PEKRAAYDQ 68

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 88.8 bits (221), Expect = 4e-21
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 3/66 (4%)

Query: 73  SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
            +Y++LG+ +  S  EIK+AY+++A+KYHPD +     EE   +F  + EAYE LSDP  
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEE---KFKEINEAYEVLSDPEK 57

Query: 133 RALYDR 138
           RA YD+
Sbjct: 58  RAQYDQ 63

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 77.3 bits (191), Expect = 3e-19
 Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 1/58 (1%)

Query: 73  SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDP 130
            +Y++LG+P   SL EIK+AY+++A KYHPD + P   EE  ++F  + EAYE LSDP
Sbjct: 2   DYYEILGVPRDASLDEIKKAYRKLALKYHPDKN-PGDKEEAEEKFKEINEAYEVLSDP 58

Length = 60

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 76.4 bits (189), Expect = 6e-19
 Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 2/56 (3%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129
           +YD+LG+P   S  EIK+AY+++A KYHPD +P D   E  ++F  + EAYE LSD
Sbjct: 2   YYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD--PEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 79.1 bits (195), Expect = 1e-17
 Identities = 31/65 (47%), Positives = 48/65 (73%), Gaps = 1/65 (1%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+  + +  EIK+AYK++ +++HPD  P +R +E  Q+F  +QEAYE LSDP  R
Sbjct: 6   YYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENR-KEAEQKFKEIQEAYEVLSDPQKR 64

Query: 134 ALYDR 138
           A+YDR
Sbjct: 65  AMYDR 69

Length = 369

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 77.9 bits (193), Expect = 4e-17
 Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 6/75 (8%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+  + S  EIK+AY+++A KYHPD +P D+  E  ++F  ++EAYE LSDP  R
Sbjct: 6   YYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAE--EKFKEIKEAYEVLSDPQKR 63

Query: 134 ALYDRDLSMGLHLAF 148
           A YD+    G H AF
Sbjct: 64  AAYDQ---YG-HAAF 74

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 77.5 bits (191), Expect = 7e-17
 Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 6/84 (7%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+  + +  EIK+AY+++A+KYHPD++P D+  E  Q+F  + EAYE LSDP  R
Sbjct: 7   YYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAE--QKFKEINEAYEILSDPQKR 64

Query: 134 ALYDRDLSMGLHLAFSARRRQQND 157
           A YD+    G H AF      Q  
Sbjct: 65  AQYDQ---FG-HAAFDPGGFGQGG 84

Length = 386

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 76.7 bits (189), Expect = 1e-16
 Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 7/84 (8%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+  + +  EIK+AY+++ARKYHPD +     EE   +F  + EAY+ LSDP  R
Sbjct: 5   YYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEE---KFKEINEAYQVLSDPEKR 61

Query: 134 ALYDRDLSMGLHLAFSARRRQQND 157
            LYD+    G H AFS   +QQ  
Sbjct: 62  KLYDQ---FG-HAAFSGSGQQQQG 81

Length = 382

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+       E+K+AY+++ARKYHPDV+     E+   RF  +  AYE LSDP  R
Sbjct: 5   YYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAED---RFKEINRAYEVLSDPETR 61

Query: 134 ALYDR 138
           A YD+
Sbjct: 62  ARYDQ 66

Length = 374

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 74.7 bits (184), Expect = 6e-16
 Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 3/65 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +YD LG+ +  S  EIK+AY+++++KYHPD++     EE   ++  VQEAYETLSDP  R
Sbjct: 6   YYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEE---KYKEVQEAYETLSDPQKR 62

Query: 134 ALYDR 138
           A YD+
Sbjct: 63  AAYDQ 67

Length = 380

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 73.3 bits (180), Expect = 2e-15
 Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 2/65 (3%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y +LG+ ++ S  EIK+AY+++A KYHPD +P D   E  +RF  V EAYE LSD   R
Sbjct: 3   YYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAE--KRFKEVSEAYEVLSDAQKR 60

Query: 134 ALYDR 138
             YDR
Sbjct: 61  ESYDR 65

Length = 391

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 71.7 bits (176), Expect = 6e-15
 Identities = 28/65 (43%), Positives = 46/65 (70%), Gaps = 3/65 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+ +S S  EIK+AY+++++KYHPD++   + E   ++F  + EAYE LSD   R
Sbjct: 6   YYEVLGVSKSASKDEIKKAYRKLSKKYHPDIN---KEEGADEKFKEISEAYEVLSDDQKR 62

Query: 134 ALYDR 138
           A YD+
Sbjct: 63  AQYDQ 67

Length = 376

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 68.8 bits (168), Expect = 6e-14
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 72  LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPG 131
           + +Y+LLG+  + S  EIK AY+++A KYHPD +      E   +F ++ EAY  LSD  
Sbjct: 2   MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAE---KFAQINEAYAVLSDAE 58

Query: 132 LRALYDR 138
            RA YDR
Sbjct: 59  KRAHYDR 65

Length = 371

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 68.5 bits (167), Expect = 9e-14
 Identities = 29/65 (44%), Positives = 48/65 (73%), Gaps = 3/65 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+  + S+ E+K+AY+++ARKYHPDV   ++  +   +F  V+EAY+TLSDP  +
Sbjct: 6   YYEVLGVDRNASVDEVKKAYRKLARKYHPDV---NKAPDAEDKFKEVKEAYDTLSDPQKK 62

Query: 134 ALYDR 138
           A YD+
Sbjct: 63  AHYDQ 67

Length = 371

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 68.3 bits (167), Expect = 1e-13
 Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 2/65 (3%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+    S  EIK++Y+++A KYHPD +P D+  E  + F    EAYE LSDP  R
Sbjct: 6   YYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDK--EAEELFKEAAEAYEVLSDPKKR 63

Query: 134 ALYDR 138
            +YD+
Sbjct: 64  GIYDQ 68

Length = 366

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 66.4 bits (161), Expect = 2e-13
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)

Query: 69  SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLS 128
           S  L +Y++LG+P + SL EIK+AY+++A KYHPD + P   +   ++F  + EAYE LS
Sbjct: 3   SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRN-PGDPKVAEEKFKEINEAYEILS 61

Query: 129 DPGLRALYDRDLSMGLHLAFSARRRQ--QNDDFQVRSEWRNRWQSQLSELKRRSMNKDA 185
           DP  RA YD+  +       S R       +     +     W+ + ++ +R++   D 
Sbjct: 62  DPERRAEYDKIGADNYFPGKSYRESAAFPIEGSLQLTGLYEEWRGKRNKTERKASLADL 120

Length = 237

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 3/64 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y LLG+  + S  EIK+AY+++AR+ HPDV+P    EE  ++F  +  AYE LSDP  R
Sbjct: 5   YYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD---EEAQEKFKEISVAYEVLSDPEKR 61

Query: 134 ALYD 137
            + D
Sbjct: 62  RIVD 65

Length = 378

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 66.5 bits (162), Expect = 3e-13
 Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 3/65 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y +LG+P++ S  EIK+A+K++ARKYHPDV+     EE   +F  + EAY  LSDP  R
Sbjct: 6   YYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEE---KFKEINEAYTVLSDPEKR 62

Query: 134 ALYDR 138
            +YD 
Sbjct: 63  RIYDT 67

Length = 291

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 67.1 bits (164), Expect = 3e-13
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 71  ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDP 130
           +  +Y++LG+    S  EIK+AY+++A +YHPD +P +   E  Q+F    EAYE L D 
Sbjct: 3   QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN--PEAEQKFKEAAEAYEVLRDA 60

Query: 131 GLRALYDR 138
             RA YDR
Sbjct: 61  EKRARYDR 68

Length = 373

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 66.4 bits (162), Expect = 5e-13
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+  +    EIK+AY+++ARKYHPDVS     E   ++F  + EAY  LSD   R
Sbjct: 7   YYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE---EGAEEKFKEISEAYAVLSDDEKR 63

Query: 134 ALYDRDLSMGLHLAFSARRRQQNDDFQ 160
             YD+    G+   FS      N +F+
Sbjct: 64  QRYDQFGHAGMD-GFSQEDIFNNINFE 89

Length = 378

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 66.4 bits (162), Expect = 5e-13
 Identities = 27/65 (41%), Positives = 46/65 (70%), Gaps = 2/65 (3%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+ ++ ++ EIK+AY++ A +YHPD +P D+  E  ++F    EAY+ LSDP  R
Sbjct: 7   YYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAE--EKFKEAAEAYDVLSDPDKR 64

Query: 134 ALYDR 138
           + YD+
Sbjct: 65  SRYDQ 69

Length = 386

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 66.0 bits (161), Expect = 7e-13
 Identities = 26/65 (40%), Positives = 45/65 (69%), Gaps = 2/65 (3%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+ +  S  EIK+A++++A KYHPD +  ++  E  ++F  + EAY+ LSDP  +
Sbjct: 6   YYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNK--EAEEKFKEINEAYQVLSDPQKK 63

Query: 134 ALYDR 138
           A YD+
Sbjct: 64  AQYDQ 68

Length = 380

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 71  ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDP 130
           E  FY  LG+    S  EIK+AY+++AR+ HPD +P D   E  +RF  V EA++ LSDP
Sbjct: 8   EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAE--ERFKAVSEAHDVLSDP 65

Query: 131 GLRALYD 137
             R  YD
Sbjct: 66  AKRKEYD 72

Length = 392

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 65.3 bits (159), Expect = 1e-12
 Identities = 26/65 (40%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y +LG+  + S  +IK+A++++A+K+HPD+ P ++  E  ++F  + EAYE LSDP  R
Sbjct: 5   YYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNK-AEAEEKFKEISEAYEVLSDPQKR 63

Query: 134 ALYDR 138
             YD+
Sbjct: 64  RQYDQ 68

Length = 365

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+ +  S+ +IK+AY+++A KYHPD +     EE   +F  + EAY  LSD   R
Sbjct: 7   YYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEE---KFKEISEAYAVLSDAEKR 63

Query: 134 ALYDRDLSMGLHLAFSARRRQQNDDF 159
           A YDR    G+   +SA    +  DF
Sbjct: 64  AQYDRFGHAGIDNQYSAEDIFRGADF 89

Length = 377

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+  S    EIK+AY+++A KYHPD +P ++  E  + F  V EAYE LS+   R
Sbjct: 5   YYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAE--EHFKEVNEAYEVLSNDDKR 62

Query: 134 ALYDR 138
             YD+
Sbjct: 63  RRYDQ 67

Length = 397

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 63.3 bits (154), Expect = 5e-12
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y ++G+  +  L  IK AY+++ARKYHPDVS     E    RF  V EA+E LSD   R
Sbjct: 6   YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEA---RFKEVAEAWEVLSDEQRR 62

Query: 134 ALYDR 138
           A YD+
Sbjct: 63  AEYDQ 67

Length = 306

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 63.3 bits (154), Expect = 5e-12
 Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 2/67 (2%)

Query: 71  ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDP 130
           E  +Y +LG+P+  +  EIK+AY+++AR+YHPD +  D   E  +RF  + EAY+ LSD 
Sbjct: 8   EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAE--ERFKEISEAYDVLSDE 65

Query: 131 GLRALYD 137
             R  YD
Sbjct: 66  KKRKEYD 72

Length = 389

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 61.2 bits (148), Expect = 3e-11
 Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 71  ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDP 130
           E S+YD+LG+ +S +  EIK AY+++A KYHPD +  ++  E  ++F    EAYE L DP
Sbjct: 3   ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNK--ESEEKFKEATEAYEILRDP 60

Query: 131 GLRALYDR 138
             R  YD+
Sbjct: 61  KKRQAYDQ 68

Length = 372

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 60.1 bits (145), Expect = 8e-11
 Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 2/81 (2%)

Query: 71  ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDP 130
           ELS+Y++L + +  +   IK++Y+++A KYHPD +  D+  E  ++F  + EAY  LSD 
Sbjct: 2   ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDK--EAEEKFKLINEAYGVLSDE 59

Query: 131 GLRALYDRDLSMGLHLAFSAR 151
             RALYDR    GL+ A +++
Sbjct: 60  KKRALYDRYGKKGLNQAGASQ 80

Length = 369

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 57.3 bits (138), Expect = 6e-10
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+ +  S  EIK+AY+++A KYHPD +  +  +E    F    EAYE L D   R
Sbjct: 5   YYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN--KEAESIFKEATEAYEVLIDDNKR 62

Query: 134 ALYDR 138
           A YDR
Sbjct: 63  AQYDR 67

Length = 365

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 57.1 bits (138), Expect = 9e-10
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 66  VDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYE 125
           VD  K    Y++L + +  +  EIK+AY+++A K+HPD           ++F  +  AYE
Sbjct: 25  VDNEK---LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD------PEKFKEISRAYE 75

Query: 126 TLSDPGLRALYD 137
            LSDP  R +YD
Sbjct: 76  VLSDPEKRKIYD 87

Length = 421

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 22/69 (31%), Positives = 43/69 (62%), Gaps = 3/69 (4%)

Query: 70  KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129
           K+  +Y++LG+ ++ S  EI+QAY+++A++YHPD++      +   + + + EA + L D
Sbjct: 2   KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHD---KMVEINEAADVLLD 58

Query: 130 PGLRALYDR 138
              R  YD+
Sbjct: 59  KDKRKQYDQ 67

Length = 372

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 54.3 bits (130), Expect = 6e-09
 Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y +LG+ ++ S  ++K+AY ++A++YHPD +     E   ++F  +  AY+ L D   R
Sbjct: 5   YYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAE---KKFKEINAAYDVLKDEQKR 61

Query: 134 ALYDR 138
           A YDR
Sbjct: 62  AAYDR 66

Length = 372

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 52.9 bits (126), Expect = 3e-08
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LGI       EIK+A++++A+KYHPD    ++  +    F  + EA + LS+P  R
Sbjct: 4   YYEVLGIDRDADEQEIKKAFRKLAKKYHPDR---NKAPDAASIFAEINEANDVLSNPKKR 60

Query: 134 ALYDR 138
           A YD+
Sbjct: 61  ANYDK 65

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 51.5 bits (123), Expect = 8e-08
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 75  YDLLGIPESVSLVEIKQAYKQMARKYHPDVSPP---DRVEEYTQRFIRVQEAYETLSDPG 131
           Y++LGI +  S  +IK+ Y+ ++ K+HPD +PP   +   EY +++  + +AY  L+D  
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 132 LRALY 136
            R  Y
Sbjct: 161 RRENY 165

Length = 610

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 7/57 (12%)

Query: 75  YDLLGIPESVSLVEIKQAY-KQMARKYHPD--VS---PPDRVEEYTQRFIRVQEAYE 125
           Y +LG+ ES    EIK+AY K M+  +HPD  V+   PP+ +E   ++   +Q AYE
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSE-HHPDKLVAKGLPPEMMEMAKEKAQEIQAAYE 258

Length = 267

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 42.9 bits (100), Expect = 6e-05
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           FYD+LG+  +  + EI + Y ++A  Y+P   P     E   +F ++ EAY+ L D   +
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYP---PKRSGNEGFHKFKKINEAYQILGDIDKK 631

Query: 134 ALYDR 138
            +Y++
Sbjct: 632 KMYNK 636

Length = 1136

>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 73  SFYDLLGIPE--SVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQE---AYETL 127
           +++ LLG+P+  ++ L  +++ Y  M  KYHPD +    ++E  Q  I   E   AY TL
Sbjct: 3   NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKA--KTLQEKEQNLIIASELNNAYSTL 60

Query: 128 SDPGLRALY 136
            D   RA Y
Sbjct: 61  KDALKRAEY 69

Length = 166

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 9/101 (8%)

Query: 89  IKQAYKQMARKYHPDV--SPPDR-VEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145
           +K  Y+++ R YHPD      +    +  Q+   V  AY+TL DP LRA Y   L+ GL 
Sbjct: 20  LKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGLD 79

Query: 146 LAFSARRRQQNDDFQVRSEWRN-RWQSQLSELKRRSMNKDA 185
            A     +++     +         + +L E + +   +DA
Sbjct: 80  HA-----KERQTLRDIAFLLEQSELREELEEAREQLDREDA 115

Length = 174

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 72  LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPG 131
           LS Y    IP      +I +A+K+   KYHPD +     +   + F  +Q+A E L D  
Sbjct: 51  LSKYRTKAIPP-----QILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRK 105

Query: 132 LRALYD 137
           LR  YD
Sbjct: 106 LRLQYD 111

Length = 379

>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 4/39 (10%)

Query: 67  DESKELSFYDLLGIPESV--SLVEIKQAYKQMARKYHPD 103
           +ESKEL   DLLG+P +   +L  +++AY +  ++YHPD
Sbjct: 8   EESKELM--DLLGLPMAAWGNLPLMRKAYLRKCKEYHPD 44

Length = 647

>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 9/71 (12%)

Query: 73  SFYDLLGIPE--SVSLVEIKQAYKQMARKYHPD--VSPPD---RVEEYTQRFIRVQEAYE 125
             + L G+P   ++    +  AY+ +  + HPD   +  D   RV    Q   R  EAY+
Sbjct: 7   DHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVA--MQWATRANEAYQ 64

Query: 126 TLSDPGLRALY 136
           TL DP  RA Y
Sbjct: 65  TLRDPLKRARY 75

Length = 176

>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 4/38 (10%)

Query: 68  ESKELSFYDLLGIPESV--SLVEIKQAYKQMARKYHPD 103
           ESKEL   DLLG+P S   +L  +++AY +   ++HPD
Sbjct: 3   ESKELM--DLLGLPRSAWGNLPLMRKAYLRKCLEFHPD 38

Length = 153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.92
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.9
PRK14288	369	chaperone protein DnaJ; Provisional	99.85
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.85
PRK14296	372	chaperone protein DnaJ; Provisional	99.84
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.83
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.83
PRK14286	372	chaperone protein DnaJ; Provisional	99.82
PRK14279	392	chaperone protein DnaJ; Provisional	99.82
PRK14282	369	chaperone protein DnaJ; Provisional	99.81
PRK14287	371	chaperone protein DnaJ; Provisional	99.8
PRK14285	365	chaperone protein DnaJ; Provisional	99.8
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.8
PRK14277	386	chaperone protein DnaJ; Provisional	99.8
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.8
PRK14294	366	chaperone protein DnaJ; Provisional	99.8
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.8
PRK14283	378	chaperone protein DnaJ; Provisional	99.8
PRK14298	377	chaperone protein DnaJ; Provisional	99.8
PRK14276	380	chaperone protein DnaJ; Provisional	99.8
PRK14301	373	chaperone protein DnaJ; Provisional	99.79
PRK14297	380	chaperone protein DnaJ; Provisional	99.79
PRK14295	389	chaperone protein DnaJ; Provisional	99.79
PRK14284	391	chaperone protein DnaJ; Provisional	99.79
PRK14291	382	chaperone protein DnaJ; Provisional	99.79
PRK14299	291	chaperone protein DnaJ; Provisional	99.79
PRK14280	376	chaperone protein DnaJ; Provisional	99.79
PRK14281	397	chaperone protein DnaJ; Provisional	99.78
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.78
PRK10767	371	chaperone protein DnaJ; Provisional	99.78
PRK14278	378	chaperone protein DnaJ; Provisional	99.77
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.76
PRK14289	386	chaperone protein DnaJ; Provisional	99.76
PRK14290	365	chaperone protein DnaJ; Provisional	99.76
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.75
PRK14300	372	chaperone protein DnaJ; Provisional	99.75
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.75
PRK05014	171	hscB co-chaperone HscB; Provisional	99.74
PRK14292	371	chaperone protein DnaJ; Provisional	99.74
PRK14293	374	chaperone protein DnaJ; Provisional	99.74
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.73
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.72
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.71
PRK01356	166	hscB co-chaperone HscB; Provisional	99.7
PRK03578	176	hscB co-chaperone HscB; Provisional	99.7
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.69
PRK00294	173	hscB co-chaperone HscB; Provisional	99.69
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.66
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.65
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.64
PHA03102	153	Small T antigen; Reviewed	99.61
PRK01773	173	hscB co-chaperone HscB; Provisional	99.56
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.54
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.5
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.46
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.45
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.41
PHA02624	647	large T antigen; Provisional	99.4
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.38
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.35
PTZ00100	116	DnaJ chaperone protein; Provisional	99.35
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.29
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.22
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.0
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.35
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.34
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.13
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.83
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.56
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.92
KOG0431	453	consensus Auxilin-like protein and related protein	96.61
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	94.09
PF13446	62	RPT: A repeated domain in UCH-protein	90.4
KOG0724	335	consensus Zuotin and related molecular chaperones	86.22

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.7e-25  Score=198.07  Aligned_cols=74  Identities=43%  Similarity=0.778  Sum_probs=69.7

Q ss_pred             cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ...|||+||||+++|+.+|||+|||+||++||||+|+..  ++|.++|++|++||+||+||++|+.||+++..++.
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~--~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD--KEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            357999999999999999999999999999999999964  58899999999999999999999999999998876

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.3e-24  Score=187.12  Aligned_cols=76  Identities=43%  Similarity=0.715  Sum_probs=71.8

Q ss_pred             cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ....+|||+||||+++|+..|||+|||+||++||||||+++  +.|.+.|+.|+.||+||+||.+|+.||.+|++|+.
T Consensus        12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd--p~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~   87 (336)
T KOG0713|consen   12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD--PNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK   87 (336)
T ss_pred             hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence            34568999999999999999999999999999999999988  78999999999999999999999999999998876

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=9.3e-22  Score=176.19  Aligned_cols=73  Identities=42%  Similarity=0.698  Sum_probs=66.8

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..|||+||||+++|+.+|||+|||+||++||||+++.+  .+|.++|++|++||+||+||.+|+.||+++..++.
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~--~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~   74 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD--KEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLN   74 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--cHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccc
Confidence            36999999999999999999999999999999999754  36789999999999999999999999999876654

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1.5e-21  Score=170.99  Aligned_cols=72  Identities=42%  Similarity=0.718  Sum_probs=67.2

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccch
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLA  147 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~  147 (206)
                      ...||+||||+++|+.+|||+|||+|+++||||||++     +.++|++|.+||+||+||++|..||+++..|+..+
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g   74 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGG   74 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhccc
Confidence            5689999999999999999999999999999999987     56899999999999999999999999999887543

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=3.4e-21  Score=172.69  Aligned_cols=72  Identities=29%  Similarity=0.601  Sum_probs=66.1

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..|||+||||+++|+.++||+|||+||++||||++++   ..|.++|++|++||+||+||.+|+.||+++..++.
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~---~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~   74 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS---PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFD   74 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhc
Confidence            4699999999999999999999999999999999864   35778999999999999999999999999876653

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=5.6e-21  Score=161.52  Aligned_cols=82  Identities=40%  Similarity=0.676  Sum_probs=74.3

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccchhhh
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAFSA  150 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~  150 (206)
                      ..|+|+||||+++|+.++|||+||+|+++||||+++++  +++.++|++||+||+||+||.+|..||.+|..|+......
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~--P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~e~f  107 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN--PEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLAEQF  107 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC--chhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHHHhh
Confidence            67999999999999999999999999999999999886  5788999999999999999999999999999888766554


Q ss_pred             hccc
Q 028609          151 RRRQ  154 (206)
Q Consensus       151 ~~~~  154 (206)
                      +...
T Consensus       108 g~d~  111 (279)
T KOG0716|consen  108 GEDS  111 (279)
T ss_pred             cccC
Confidence            4433

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.8e-20  Score=168.03  Aligned_cols=82  Identities=40%  Similarity=0.720  Sum_probs=74.1

Q ss_pred             cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc-
Q 028609           68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSP-PDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH-  145 (206)
Q Consensus        68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~-~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~-  145 (206)
                      +..+.+||.+|+|+++|+.+|||+|||++++.|||||.. ++.++.|++.|+.|..||+||+||.+|++||.+|..|+. 
T Consensus         5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t   84 (546)
T KOG0718|consen    5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKT   84 (546)
T ss_pred             ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccc
Confidence            445679999999999999999999999999999999986 566788999999999999999999999999999999887 


Q ss_pred             chhh
Q 028609          146 LAFS  149 (206)
Q Consensus       146 ~~~~  149 (206)
                      .++.
T Consensus        85 ~gwE   88 (546)
T KOG0718|consen   85 EGWE   88 (546)
T ss_pred             cCce
Confidence            4443

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.2e-20  Score=169.24  Aligned_cols=72  Identities=42%  Similarity=0.692  Sum_probs=66.7

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      .|||+||||+++|+.++||+|||+|+++||||+++..  .+|.++|++|++||+||+||.+|+.||+++..++.
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~   75 (372)
T PRK14286          4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN--KESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVN   75 (372)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhc
Confidence            6999999999999999999999999999999998754  46789999999999999999999999999877654

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.3e-20  Score=170.06  Aligned_cols=70  Identities=43%  Similarity=0.695  Sum_probs=65.0

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhh
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSM  142 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~  142 (206)
                      ..|||+||||+++|+.++||+|||+|+++||||+++..  ++|.++|++|++||+||+||.+|+.||+++..
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~   77 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD--PAAEERFKAVSEAHDVLSDPAKRKEYDETRRL   77 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence            47999999999999999999999999999999999754  46789999999999999999999999999753

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=5e-20  Score=165.04  Aligned_cols=74  Identities=43%  Similarity=0.785  Sum_probs=66.9

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++... .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~   76 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENR-KEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQ   76 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccch-hHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccc
Confidence            469999999999999999999999999999999986542 35789999999999999999999999999876653

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=5.5e-20  Score=164.89  Aligned_cols=72  Identities=40%  Similarity=0.722  Sum_probs=66.0

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.   .+|.++|++|++||+||+||.+|+.||+++..++.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~   74 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA---PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPN   74 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccc
Confidence            3699999999999999999999999999999999864   36778999999999999999999999999877654

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=5.7e-20  Score=164.46  Aligned_cols=72  Identities=39%  Similarity=0.605  Sum_probs=66.5

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      .|||+||||+++|+.++||+|||+|+++||||+++..  ++|.++|++|++||+||+||.+|..||.++..++.
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~   74 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN--KEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFE   74 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhc
Confidence            6999999999999999999999999999999998754  46788999999999999999999999999877653

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.80  E-value=5e-20  Score=167.32  Aligned_cols=69  Identities=36%  Similarity=0.634  Sum_probs=63.5

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..|||+||||+++|+.++||+|||+||++||||++++      .++|++|++||+||+||.+|+.||.++..++.
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~------~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~   95 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD------PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLE   95 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch------HHHHHHHHHHHHHhccHHHHHHHhhhcchhcc
Confidence            5799999999999999999999999999999999853      26899999999999999999999999876654

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=7.1e-20  Score=164.93  Aligned_cols=73  Identities=42%  Similarity=0.768  Sum_probs=67.0

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..|||+||||+++|+.++||+|||+|+++||||+++..  .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~   76 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD--KEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFD   76 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccc
Confidence            36999999999999999999999999999999999754  46788999999999999999999999999877654

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.1e-19  Score=150.81  Aligned_cols=73  Identities=34%  Similarity=0.597  Sum_probs=68.5

Q ss_pred             cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhh
Q 028609           70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSM  142 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~  142 (206)
                      ...|+|+||||.++|+..+|++||+++++++|||+++.....+|+++|+.|+.||.||+|..+|+.||..|..
T Consensus        12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i   84 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI   84 (264)
T ss_pred             cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence            3459999999999999999999999999999999998777789999999999999999999999999998754

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=8.5e-20  Score=163.39  Aligned_cols=73  Identities=42%  Similarity=0.735  Sum_probs=67.2

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..|||+||||+++|+.++||+|||+|+++||||+++..  .+|.++|+.|++||+||+||.+|+.||+++..|+.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~   75 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD--KEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLS   75 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--hHHHHHHHHHHHHHHHhccHHHHHHHHhhcccccc
Confidence            46999999999999999999999999999999999754  46788999999999999999999999999987654

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.80  E-value=9.1e-20  Score=123.91  Aligned_cols=64  Identities=45%  Similarity=0.827  Sum_probs=60.4

Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 028609           73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYD  137 (206)
Q Consensus        73 d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD  137 (206)
                      |||+||||+++++.++||++|+++++.+|||++.... ..+.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~-~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE-AEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH-HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh-hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6899999999999999999999999999999987765 567899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=7.3e-20  Score=164.45  Aligned_cols=72  Identities=40%  Similarity=0.692  Sum_probs=66.5

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++   .+|.++|++|++||+||+||.+|+.||+++..|+.
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~   75 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE---EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMD   75 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccc
Confidence            4699999999999999999999999999999999874   36788999999999999999999999999877653

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=7.3e-20  Score=164.39  Aligned_cols=72  Identities=38%  Similarity=0.689  Sum_probs=66.0

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.   ..+.++|++|++||+||+||.+|+.||+++..|+.
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~   75 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE---PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGID   75 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC---hhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccc
Confidence            3699999999999999999999999999999999874   35678999999999999999999999999877654

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=8e-20  Score=164.30  Aligned_cols=72  Identities=43%  Similarity=0.738  Sum_probs=66.2

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++..   .|.++|++|++||+||+||.+|+.||+++..++.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~---~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~   74 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP---GAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGAN   74 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---CHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcccc
Confidence            36999999999999999999999999999999998753   5678999999999999999999999999887654

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1e-19  Score=163.32  Aligned_cols=73  Identities=41%  Similarity=0.689  Sum_probs=67.1

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..|||+||||+++|+.++||+|||+|+++||||+++..  .+|.++|++|++||+||+||.+|+.||.++..|+.
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~   75 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN--PEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVN   75 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC--hHHHHHHHHHHHHHHHhcchhhhhhhhhccccccc
Confidence            36999999999999999999999999999999999764  46788999999999999999999999999877654

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=9.5e-20  Score=163.81  Aligned_cols=72  Identities=36%  Similarity=0.651  Sum_probs=66.7

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      .|||+||||+++|+.++||+|||+|+++||||+++..  .+|.++|++|++||+||+||.+|+.||+++..++.
T Consensus         4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~   75 (380)
T PRK14297          4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN--KEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFN   75 (380)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcCHhhhCchhhcCccccc
Confidence            6999999999999999999999999999999999754  46789999999999999999999999999877654

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.4e-19  Score=163.26  Aligned_cols=73  Identities=40%  Similarity=0.713  Sum_probs=66.1

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHH----hhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDR----DLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~----~~~~~~~  145 (206)
                      ..|||+||||+++|+.++||+|||+|+++||||+++..  .+|.++|++|++||+||+||.+|+.||+    ++..|+.
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~   84 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD--AKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFR   84 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--hhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccc
Confidence            36999999999999999999999999999999998754  4678999999999999999999999998    7766553

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.5e-19  Score=163.12  Aligned_cols=71  Identities=46%  Similarity=0.746  Sum_probs=65.7

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcc
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGL  144 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~  144 (206)
                      .|||+||||+++|+.++||+|||+|+++||||++++.  ..|.++|++|++||+||+||.+|+.||+++..++
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~   71 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD--AEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP   71 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence            4899999999999999999999999999999999764  4678899999999999999999999999987654

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.3e-19  Score=163.11  Aligned_cols=72  Identities=39%  Similarity=0.727  Sum_probs=66.1

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.   ..|.++|++|++||+||+||.+|+.||.++..++.
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~   73 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN---PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFS   73 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccc
Confidence            3699999999999999999999999999999999975   35678999999999999999999999999877654

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.8e-19  Score=156.71  Aligned_cols=71  Identities=41%  Similarity=0.711  Sum_probs=65.3

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGL  144 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~  144 (206)
                      ..|||+||||+++|+.++||+|||+|+++||||++++   ..+.++|++|++||+||+||.+|+.||.++..+.
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~   73 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS---PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAA   73 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccc
Confidence            3699999999999999999999999999999999874   3577899999999999999999999999987654

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.7e-19  Score=161.92  Aligned_cols=71  Identities=39%  Similarity=0.697  Sum_probs=65.7

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      .|||+||||+++|+.++||+|||+|+++||||+++..   .|.++|++|++||+||+||.+|+.||+++..++.
T Consensus         4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~---~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~   74 (376)
T PRK14280          4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE---GADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPN   74 (376)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---cHHHHHHHHHHHHHHhccHhHHHHHHhcCccccc
Confidence            6999999999999999999999999999999998753   5678999999999999999999999999877654

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=2.2e-19  Score=162.34  Aligned_cols=72  Identities=40%  Similarity=0.675  Sum_probs=66.5

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      .|||+||||+++|+.++||+|||+|+++||||+++..  .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~   74 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN--KEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVG   74 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhc
Confidence            5999999999999999999999999999999999754  46778999999999999999999999999887654

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=6.1e-19  Score=152.83  Aligned_cols=75  Identities=43%  Similarity=0.694  Sum_probs=69.6

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccch
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLA  147 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~  147 (206)
                      ..|||+||||..+++..+|++||+..+++||||||+++  +.|.++|+.|.+||+||+|+..|..||..+..+....
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~d--P~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~   78 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGD--PQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ   78 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence            67999999999999999999999999999999999988  4588999999999999999999999999998776543

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=3.4e-19  Score=159.73  Aligned_cols=73  Identities=42%  Similarity=0.741  Sum_probs=66.7

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..|||+||||+++|+.++||+|||+|+++||||+++..  ..|.++|++|++||+||+||.+|+.||.++..++.
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~   75 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD--KEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFE   75 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--HHHHHHHHHHHHHHHHhcchhhhhHhhhccccccc
Confidence            36999999999999999999999999999999998754  45788999999999999999999999999876654

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=3.2e-19  Score=160.30  Aligned_cols=68  Identities=43%  Similarity=0.706  Sum_probs=63.7

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhh
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSM  142 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~  142 (206)
                      .|||+||||+++|+.++||+|||+|+++||||++++   ++|.++|++|++||+||+||.+|..||.++..
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~---~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~   70 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD---EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP   70 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc---HHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence            599999999999999999999999999999999974   46788999999999999999999999998764

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=6.6e-19  Score=157.88  Aligned_cols=73  Identities=42%  Similarity=0.702  Sum_probs=66.9

Q ss_pred             cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhh
Q 028609           68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS  141 (206)
Q Consensus        68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~  141 (206)
                      ....+.||+||||.++|+..+||++||+|||+||||++++. .++|+++|+.|+.||+|||||..|+.||.+-.
T Consensus         4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~-ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre   76 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDR-IEEATQQFQLIQAAYEVLSDPQERAWYDSHRE   76 (508)
T ss_pred             chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCcc-HHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence            34568999999999999999999999999999999998765 47899999999999999999999999997654

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=9.3e-19  Score=157.70  Aligned_cols=73  Identities=38%  Similarity=0.716  Sum_probs=67.0

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++..  .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~   76 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD--KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVG   76 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--hHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc
Confidence            46999999999999999999999999999999999754  46789999999999999999999999999876653

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1e-18  Score=156.42  Aligned_cols=73  Identities=36%  Similarity=0.711  Sum_probs=66.6

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      .|||+||||+++|+.++||+|||+|+++||||+++.. ..+|.++|+.|++||+||+||.+|+.||.++..++.
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~   75 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN-KAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFG   75 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccc
Confidence            5999999999999999999999999999999998754 236789999999999999999999999999876653

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.75  E-value=1.2e-18  Score=155.28  Aligned_cols=70  Identities=43%  Similarity=0.773  Sum_probs=64.5

Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        73 d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      |||+||||+++|+.++||+||++|+++||||+++.   .++.++|+.|++||+||+||.+|..||.++..++.
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~   70 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD---KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFN   70 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---ccHHHHHHHHHHHHHHhhChHHHHhhhhccccccc
Confidence            79999999999999999999999999999999973   35678999999999999999999999999877654

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.3e-18  Score=156.12  Aligned_cols=71  Identities=31%  Similarity=0.641  Sum_probs=65.1

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      .|||+||||+++|+.+|||+|||+++++||||+++..   .+.++|++|++||+||+||.+|+.||.++..++.
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~---~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~   73 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK---DAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQ   73 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---CHHHHHHHHHHHHHHhhhHhHhhHHHhccccccc
Confidence            5999999999999999999999999999999998743   4678999999999999999999999999876654

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.6e-18  Score=150.49  Aligned_cols=68  Identities=40%  Similarity=0.682  Sum_probs=65.0

Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhc
Q 028609           73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMG  143 (206)
Q Consensus        73 d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~  143 (206)
                      |||+||||+++|+..|||+||++|+++||||.+...   .|.++|++|.+||+||+|+++|..||..+..+
T Consensus        44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~---~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK---EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc---chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            999999999999999999999999999999999876   67889999999999999999999999998765

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.74  E-value=1.1e-17  Score=135.21  Aligned_cols=98  Identities=23%  Similarity=0.420  Sum_probs=78.0

Q ss_pred             cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccc
Q 028609           72 LSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPD---RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHL  146 (206)
Q Consensus        72 ~d~Y~iLgv~~~--as~~eIkkaYr~l~~~~HPDk~~~~---~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~  146 (206)
                      .|||+||||+++  ++..+|+++|+++++++|||+....   .+..+.+.|..|++||++|+||.+|+.|+..+. |...
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~-g~~~   79 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH-GFDL   79 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc-CCcc
Confidence            489999999997  6789999999999999999997543   233467899999999999999999999998765 5554


Q ss_pred             hhhhhcccCchhhhhhHHHHHHHH
Q 028609          147 AFSARRRQQNDDFQVRSEWRNRWQ  170 (206)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~  170 (206)
                      ........+...++.+++|++...
T Consensus        80 ~~~~~~~~d~efLme~me~rE~le  103 (171)
T PRK05014         80 AHEQHTVRDTAFLMEQMELREELE  103 (171)
T ss_pred             ccccCCcCCHHHHHHHHHHHHHHH
Confidence            333333344567788899988653

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=2.5e-18  Score=154.12  Aligned_cols=69  Identities=41%  Similarity=0.687  Sum_probs=64.3

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhc
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMG  143 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~  143 (206)
                      .|||+||||+++|+.++||+|||+|+++||||++++   ..|.++|+.|++||+||+||.+|+.||.++..+
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~---~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~   70 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE---KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP   70 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence            589999999999999999999999999999999974   357789999999999999999999999998765

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=3.1e-18  Score=153.75  Aligned_cols=71  Identities=41%  Similarity=0.730  Sum_probs=65.1

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      .|||+||||+++|+.++||+|||+|+++||||+++..   .+.++|+.|++||+||+||.+|+.||.++..|+.
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~   73 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP---GAEDRFKEINRAYEVLSDPETRARYDQFGEAGVS   73 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc---CHHHHHHHHHHHHHHHhchHHHHHHhhccccccc
Confidence            5999999999999999999999999999999998753   4678999999999999999999999999876553

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.73  E-value=6.7e-18  Score=162.75  Aligned_cols=74  Identities=27%  Similarity=0.500  Sum_probs=67.9

Q ss_pred             ccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           69 SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        69 ~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ....+||+||||+++|+..+||+|||+||++||||+++.+   .|.++|+.|++||+||+||.+|+.||.+|..|+.
T Consensus       570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~---~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~  643 (1136)
T PTZ00341        570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN---EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK  643 (1136)
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence            3458999999999999999999999999999999999764   4678999999999999999999999999987755

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.72  E-value=6.9e-18  Score=147.77  Aligned_cols=67  Identities=43%  Similarity=0.693  Sum_probs=62.5

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhh
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS  141 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~  141 (206)
                      .|||+||||+++|+.++||+|||+|+++||||+++..   .+.++|++|++||+||+||.+|+.||.++.
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~---~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP---DAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---cHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            6999999999999999999999999999999998643   577899999999999999999999999864

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.71  E-value=1.7e-17  Score=110.95  Aligned_cols=59  Identities=51%  Similarity=0.925  Sum_probs=54.2

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChh
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPG  131 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~  131 (206)
                      .|||+||||+++++.++||++|+++++.+|||+++.. ...+.+.|..|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD-KEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHHHcCCC
Confidence            4899999999999999999999999999999998754 3577889999999999999985

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.70  E-value=5.2e-17  Score=130.70  Aligned_cols=97  Identities=25%  Similarity=0.318  Sum_probs=76.1

Q ss_pred             cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-cHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccchh
Q 028609           72 LSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPD-RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAF  148 (206)
Q Consensus        72 ~d~Y~iLgv~~~--as~~eIkkaYr~l~~~~HPDk~~~~-~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~~  148 (206)
                      .|||+||||++.  ++..+|+++|+++++++|||++... .+..+.+.+..|++||+||+||.+|+.|+..+. |+....
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~-g~~~~~   80 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ-NINLND   80 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc-CCCCCC
Confidence            589999999997  7899999999999999999998642 233455678999999999999999999998875 665443


Q ss_pred             hhh-cccCchhhhhhHHHHHHH
Q 028609          149 SAR-RRQQNDDFQVRSEWRNRW  169 (206)
Q Consensus       149 ~~~-~~~~~~~~~~~~~~~~~~  169 (206)
                      ... ...+...++..++|++..
T Consensus        81 ~~~~~~~d~~fLme~me~rE~l  102 (166)
T PRK01356         81 EKTRSLLSPLELSIFWDEMERI  102 (166)
T ss_pred             ccccccCCHHHHHHHHHHHHHH
Confidence            222 233445667788887654

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.70  E-value=9.7e-17  Score=130.22  Aligned_cols=99  Identities=25%  Similarity=0.387  Sum_probs=77.4

Q ss_pred             ccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---HHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPDR---VEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~--as~~eIkkaYr~l~~~~HPDk~~~~~---~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..|||+||||+++  ++..+|+++|+++++++|||++....   +..+.+.+..||+||++|+||.+|+.|+..+. |+.
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~-G~~   83 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR-GVD   83 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc-CCC
Confidence            3699999999996  67899999999999999999975432   23356678999999999999999999998765 555


Q ss_pred             chhhhhcccCchhhhhhHHHHHHHH
Q 028609          146 LAFSARRRQQNDDFQVRSEWRNRWQ  170 (206)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~  170 (206)
                      .........+...++.+++|++...
T Consensus        84 ~~~e~~~~~d~~fLme~mE~rE~le  108 (176)
T PRK03578         84 VQAENNTAMPPAFLMQQMEWREAIE  108 (176)
T ss_pred             CccccCCCCCHHHHHHHHHHHHHHH
Confidence            4332233334557788899988653

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.69  E-value=6.3e-17  Score=106.31  Aligned_cols=55  Identities=51%  Similarity=0.915  Sum_probs=51.4

Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCC
Q 028609           73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD  129 (206)
Q Consensus        73 d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsd  129 (206)
                      |||+||||+++++.++||++|+++++.+|||++...  ..+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~--~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD--PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcC
Confidence            699999999999999999999999999999999764  5678899999999999987

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.69  E-value=1.9e-16  Score=128.09  Aligned_cols=99  Identities=23%  Similarity=0.344  Sum_probs=78.7

Q ss_pred             cccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcc
Q 028609           70 KELSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPD---RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGL  144 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~--as~~eIkkaYr~l~~~~HPDk~~~~---~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~  144 (206)
                      ...|||++|||++.  ++..+|+++|+++++++|||++...   ++..+.+.|..||+||+||+||.+|+.|+..+. |.
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~-g~   80 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS-GH   80 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc-CC
Confidence            45799999999998  6789999999999999999997543   234577899999999999999999999998875 55


Q ss_pred             cchhhhhcccCchhhhhhHHHHHHHH
Q 028609          145 HLAFSARRRQQNDDFQVRSEWRNRWQ  170 (206)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (206)
                      .... .....+...++.+++|++...
T Consensus        81 ~~~~-~~~~~d~~fLme~me~rE~le  105 (173)
T PRK00294         81 EVPL-EVTVHDPEFLLQQMQLREELE  105 (173)
T ss_pred             CCCc-ccCCCCHHHHHHHHHHHHHHH
Confidence            5432 122234457788899988653

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.66  E-value=3.6e-16  Score=148.04  Aligned_cols=71  Identities=35%  Similarity=0.626  Sum_probs=65.3

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      .|||+||||+++|+.++||++||+|+++||||+++.   ..+.++|+.|++||++|+||.+|+.||.++..|..
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~---~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d   72 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA---PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD   72 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence            589999999999999999999999999999999876   35678999999999999999999999999876653

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=3.1e-16  Score=127.56  Aligned_cols=70  Identities=47%  Similarity=0.788  Sum_probs=64.5

Q ss_pred             cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhh
Q 028609           70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDL  140 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~  140 (206)
                      ...+||+||||+++|+..+|+++|++++++||||+++.... .+.+.|+.|++||+||+|+.+|..||..+
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~-~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPK-VAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchh-HHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            45789999999999999999999999999999999987643 57899999999999999999999999863

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=3.4e-16  Score=128.87  Aligned_cols=74  Identities=32%  Similarity=0.587  Sum_probs=66.4

Q ss_pred             cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhc
Q 028609           68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMG  143 (206)
Q Consensus        68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~  143 (206)
                      .....|+|+||||+++++..|||+|||+|+++|||||+++.  ++.++.|..|.+||+.|+|+..|..|..+|...
T Consensus        95 ~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~--~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD  168 (230)
T KOG0721|consen   95 ERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE--EGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD  168 (230)
T ss_pred             HhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc--chhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence            45567999999999999999999999999999999999875  344578999999999999999999999998643

>PHA03102 Small T antigen; Reviewed

Probab=99.61  E-value=4.3e-16  Score=123.44  Aligned_cols=68  Identities=19%  Similarity=0.323  Sum_probs=61.3

Q ss_pred             cccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           72 LSFYDLLGIPESV--SLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        72 ~d~Y~iLgv~~~a--s~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..+|+||||+++|  +.++||+|||++++++|||+++++      ++|+.|++||++|+|+.+|..||.++.....
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~------e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~   74 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDE------EKMKELNTLYKKFRESVKSLRDLDGEEDSSS   74 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchh------HHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence            4689999999999  999999999999999999997542      5899999999999999999999999876533

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.56  E-value=1.8e-14  Score=116.64  Aligned_cols=98  Identities=21%  Similarity=0.303  Sum_probs=79.7

Q ss_pred             cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccc
Q 028609           72 LSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPD---RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHL  146 (206)
Q Consensus        72 ~d~Y~iLgv~~~--as~~eIkkaYr~l~~~~HPDk~~~~---~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~  146 (206)
                      .|||++||||+.  .+..+|++.|+.+.+.+|||+....   ++..+.+....||+||.+|+||.+|+.|-..+..|+..
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g~~~   81 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQQ   81 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccCCCC
Confidence            589999999998  8899999999999999999997443   33456778999999999999999999999887766654


Q ss_pred             hhhhhcccCchhhhhhHHHHHHH
Q 028609          147 AFSARRRQQNDDFQVRSEWRNRW  169 (206)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~  169 (206)
                      ........+....+.+++|++..
T Consensus        82 ~~e~~~~~d~~fLme~ME~rE~l  104 (173)
T PRK01773         82 NLEEKSTQDMAFLMQQMEWREQL  104 (173)
T ss_pred             CcccccCCCHHHHHHHHHHHHHH
Confidence            33333444556778899998865

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=1.5e-14  Score=130.03  Aligned_cols=107  Identities=27%  Similarity=0.360  Sum_probs=83.1

Q ss_pred             cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccch
Q 028609           68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLA  147 (206)
Q Consensus        68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~  147 (206)
                      +.+..|+|.+|||+.+++.++|||.||++|...|||||..   +.|.|.|+.++.||++|+|+.+|..||..+.......
T Consensus       231 e~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~---~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~kene~~  307 (490)
T KOG0720|consen  231 ELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI---PRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKENELH  307 (490)
T ss_pred             hhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC---hhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHH
Confidence            4447899999999999999999999999999999999985   4777899999999999999999999999875422210


Q ss_pred             hhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhcCcCCCCcc
Q 028609          148 FSARRRQQNDDFQVRSEWRNRWQSQLSELKRRSMNKDAGGNI  189 (206)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~r~~~~~~~~g~~  189 (206)
                                 ......|. ..+.+++|.++.++=...++-.
T Consensus       308 -----------~~~~~~~~-~~~~~~eEA~ntI~CskC~n~H  337 (490)
T KOG0720|consen  308 -----------RQVISSLN-DLQKAVEEARNTIFCSKCGNTH  337 (490)
T ss_pred             -----------HHHHHHHH-HHHHHHHHHHhheehhhhcCcc
Confidence                       01112222 4556788888888765455443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.50  E-value=1.6e-14  Score=126.78  Aligned_cols=73  Identities=33%  Similarity=0.602  Sum_probs=66.9

Q ss_pred             cccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-HHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 028609           66 VDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDR-VEEYTQRFIRVQEAYETLSDPGLRALYDR  138 (206)
Q Consensus        66 ~~~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~-~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~  138 (206)
                      ......+|||.||||.++|+..||.||||+++.+||||...+.+ +..|+.+|..|..|-+||+||++|..||.
T Consensus       388 kkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn  461 (504)
T KOG0624|consen  388 KKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN  461 (504)
T ss_pred             HHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC
Confidence            34567899999999999999999999999999999999986654 67889999999999999999999999996

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=4e-14  Score=120.34  Aligned_cols=74  Identities=43%  Similarity=0.711  Sum_probs=67.5

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..|||.||||.++|+.++|++||+++++.+|||+++.. ...+..+|++|.+||+||+||.+|..||.++..+..
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~   75 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLK   75 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc-hhhHHHHHhhhhccccccCCHHHhhhccccCccccc
Confidence            46899999999999999999999999999999998877 667777999999999999999999999999875544

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.45  E-value=4.5e-13  Score=106.92  Aligned_cols=85  Identities=26%  Similarity=0.383  Sum_probs=67.4

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccchhhhhcccCchhhh
Q 028609           84 VSLVEIKQAYKQMARKYHPDVSPPD---RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRRQQNDDFQ  160 (206)
Q Consensus        84 as~~eIkkaYr~l~~~~HPDk~~~~---~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~~~~~~~~~  160 (206)
                      .+..+|+++|+++++++|||+....   .+..+.+.|..||+||++|+||.+|+.|+..+. |+..........+....+
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~-g~~~~~e~~~~~d~~fLm   81 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH-GIDLASEQHSVRDTAFLM   81 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc-CCCCCcccCCCCCHHHHH
Confidence            5788999999999999999986443   334577899999999999999999999999887 665443333334455778


Q ss_pred             hhHHHHHHH
Q 028609          161 VRSEWRNRW  169 (206)
Q Consensus       161 ~~~~~~~~~  169 (206)
                      .+++|++..
T Consensus        82 e~Me~rE~l   90 (157)
T TIGR00714        82 EQLELREEL   90 (157)
T ss_pred             HHHHHHHHH
Confidence            889998765

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=1.2e-13  Score=116.32  Aligned_cols=69  Identities=36%  Similarity=0.613  Sum_probs=63.4

Q ss_pred             cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhh
Q 028609           70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS  141 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~  141 (206)
                      ...|.|+||||.++++..+|.+|||+|++++|||++.+.   ++.+.|..|..||++|.|.+.|..||-.+.
T Consensus        31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~---e~k~~F~~iAtayeilkd~e~rt~ydyald   99 (329)
T KOG0722|consen   31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP---ESKKLFVKIATAYEILKDNETRTQYDYALD   99 (329)
T ss_pred             cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc---hhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence            457999999999999999999999999999999999886   445799999999999999999999998764

>PHA02624 large T antigen; Provisional

Probab=99.40  E-value=3.2e-13  Score=126.53  Aligned_cols=87  Identities=23%  Similarity=0.434  Sum_probs=68.6

Q ss_pred             cccccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHH--Hhhhhccc
Q 028609           70 KELSFYDLLGIPESV--SLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYD--RDLSMGLH  145 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~a--s~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD--~~~~~~~~  145 (206)
                      +..++|+||||+++|  +.++||+|||+++++||||++++      .++|++|++||++|+|+.++..|.  ..-..|+.
T Consensus         9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd------eekfk~Ln~AYevL~d~~k~~r~~fd~~~~~~v~   82 (647)
T PHA02624          9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD------EEKMKRLNSLYKKLQEGVKSARQSFGTQDSSEIP   82 (647)
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc------HHHHHHHHHHHHHHhcHHHhhhcccccccccCCC
Confidence            356899999999999  99999999999999999999743      358999999999999999999993  22101110


Q ss_pred             chhhhhcccCchhhhhhHHHHHHHHHHHHH
Q 028609          146 LAFSARRRQQNDDFQVRSEWRNRWQSQLSE  175 (206)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  175 (206)
                                  + .+..+|.+.|+.....
T Consensus        83 ------------~-~~~~~w~~ww~~f~~k   99 (647)
T PHA02624         83 ------------T-YGTPEWEQWWEEFNEK   99 (647)
T ss_pred             ------------C-CccccHHHHHHHhhhh
Confidence                        0 1456788888877654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=2.8e-13  Score=120.96  Aligned_cols=74  Identities=38%  Similarity=0.569  Sum_probs=67.6

Q ss_pred             ccccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHh
Q 028609           65 VVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRD  139 (206)
Q Consensus        65 ~~~~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~  139 (206)
                      ..+.++..|||.||||.++++..+||++|+++++.+|||++... +.+++.+|++|.+||.||+||.+|..||..
T Consensus       366 aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags-q~eaE~kFkevgeAy~il~d~~kr~r~dsg  439 (486)
T KOG0550|consen  366 ALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS-QKEAEAKFKEVGEAYTILSDPMKRVRFDSG  439 (486)
T ss_pred             HHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch-hHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence            34567789999999999999999999999999999999999776 467889999999999999999999999963

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.35  E-value=8e-13  Score=113.86  Aligned_cols=60  Identities=30%  Similarity=0.444  Sum_probs=52.8

Q ss_pred             cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----ccHHHHHHHHHHHHHHHHHcCC
Q 028609           70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPP-----DRVEEYTQRFIRVQEAYETLSD  129 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~-----~~~~~a~~~f~~I~~Ay~vLsd  129 (206)
                      ...++|+||||+++++.++||++||+|+++||||+...     ...+.++++|+.|++||++|+.
T Consensus       198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            44799999999999999999999999999999999632     2346789999999999999974

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.35  E-value=1.1e-12  Score=99.23  Aligned_cols=52  Identities=31%  Similarity=0.360  Sum_probs=46.6

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcC
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLS  128 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLs  128 (206)
                      ..++|+||||+++++.++||++|+++++++|||+.+.      .+.|++|++||++|.
T Consensus        64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs------~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS------TYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHHHh
Confidence            3689999999999999999999999999999998643      246899999999985

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.29  E-value=3.3e-12  Score=114.96  Aligned_cols=74  Identities=30%  Similarity=0.561  Sum_probs=67.9

Q ss_pred             ccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---ccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhh
Q 028609           69 SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPP---DRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSM  142 (206)
Q Consensus        69 ~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~---~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~  142 (206)
                      .+..|+||||||..+++..+||++||+|+.+|||||.++   ..+++.++.++.|++||..|+|...|..|-.+|.-
T Consensus        95 ~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP  171 (610)
T COG5407          95 RRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP  171 (610)
T ss_pred             HcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence            355799999999999999999999999999999999876   67788899999999999999999999999988653

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=2e-11  Score=99.77  Aligned_cols=69  Identities=28%  Similarity=0.409  Sum_probs=61.5

Q ss_pred             cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHh
Q 028609           70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRD  139 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~  139 (206)
                      =+.|+|+||.|.|+.+.++||+.||+|++.+|||||+++. +.|...|..|.+||.+|-|+..|..-+.-
T Consensus        51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~-~rAqkAFdivkKA~k~l~n~~~rkr~~~~  119 (250)
T KOG1150|consen   51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDA-ERAQKAFDIVKKAYKLLENDKIRKRCLDV  119 (250)
T ss_pred             cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccH-HHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            4679999999999999999999999999999999998763 57788999999999999999977665543

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=3.9e-10  Score=96.10  Aligned_cols=75  Identities=31%  Similarity=0.423  Sum_probs=62.8

Q ss_pred             cccccccccccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhh
Q 028609           66 VDESKELSFYDLLGIPES---VSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDL  140 (206)
Q Consensus        66 ~~~~~~~d~Y~iLgv~~~---as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~  140 (206)
                      ...++..|+|.+|||+.-   ++..+|.++.++.+.+||||+..........+.|+.|++||+||+|+.+|..||..-
T Consensus        37 ~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d  114 (379)
T COG5269          37 FKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND  114 (379)
T ss_pred             hhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence            457888999999999864   889999999999999999999632221234568999999999999999999999643

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=5e-07  Score=88.83  Aligned_cols=54  Identities=33%  Similarity=0.491  Sum_probs=46.4

Q ss_pred             cccccccccCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcC
Q 028609           70 KELSFYDLLGIPES----VSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLS  128 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~----as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLs  128 (206)
                      ...+-|+||.|+-+    ...+.||++|++|+.+||||||+.     ..++|..+++||+.|+
T Consensus      1279 S~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE-----GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1279 SVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE-----GREMFERVNKAYELLS 1336 (2235)
T ss_pred             chHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch-----HHHHHHHHHHHHHHHH
Confidence            34577999999865    345789999999999999999974     4579999999999998

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=5.5e-07  Score=75.57  Aligned_cols=58  Identities=28%  Similarity=0.633  Sum_probs=49.8

Q ss_pred             ccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHH-HcCC
Q 028609           69 SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYE-TLSD  129 (206)
Q Consensus        69 ~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~-vLsd  129 (206)
                      .+-..||.||||..+|+.++|+.+|..|++++|||...+.   ...+.|.+|.+||. ||..
T Consensus        44 e~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~---adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   44 EKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEE---ADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCcc---ccHHHHHHHHHHHHHHHHH
Confidence            3456899999999999999999999999999999987654   33468999999998 7754

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=4.4e-06  Score=61.98  Aligned_cols=51  Identities=24%  Similarity=0.305  Sum_probs=44.4

Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCC
Q 028609           73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD  129 (206)
Q Consensus        73 d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsd  129 (206)
                      .--.||||.++++.+.||+++|++....|||+.+.+-.      -..||+|+++|..
T Consensus        57 EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYl------AsKINEAKdlLe~  107 (112)
T KOG0723|consen   57 EAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYL------ASKINEAKDLLEG  107 (112)
T ss_pred             HHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHH------HHHHHHHHHHHhc
Confidence            34579999999999999999999999999999987632      4589999999964

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=2.7e-05  Score=61.65  Aligned_cols=73  Identities=27%  Similarity=0.502  Sum_probs=57.7

Q ss_pred             ccccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---ccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhh
Q 028609           69 SKELSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPP---DRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS  141 (206)
Q Consensus        69 ~~~~d~Y~iLgv~~~--as~~eIkkaYr~l~~~~HPDk~~~---~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~  141 (206)
                      ....+||.++|....  ..++.++.-|.-..+++|||+...   .....|.+....+++||.+|.||.+|+.|-..+.
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~   82 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK   82 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            345789999987655  677778878999999999998422   1123567889999999999999999999976543

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=7.9e-05  Score=60.33  Aligned_cols=73  Identities=36%  Similarity=0.533  Sum_probs=58.6

Q ss_pred             ccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           73 SFYDLLGIPESV--SLVEIKQAYKQMARKYHPDVSPPD---RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        73 d~Y~iLgv~~~a--s~~eIkkaYr~l~~~~HPDk~~~~---~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      |++.++|+++.+  ..+.++..|+.+.+.+|||+....   ....+.+.+..++.||.+|.||.+|+.|-..+..|..
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~~   79 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGLD   79 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccccc
Confidence            466777777764  456699999999999999986432   2233567899999999999999999999888876654

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.00076  Score=54.58  Aligned_cols=56  Identities=27%  Similarity=0.492  Sum_probs=47.5

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-----CccHHHHHHHHHHHHHHHHHc
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSP-----PDRVEEYTQRFIRVQEAYETL  127 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~-----~~~~~~a~~~f~~I~~Ay~vL  127 (206)
                      .+.|.+||+...+...+|+++|+++....|||+..     ..-.+.+.++++.|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            68899999999999999999999999999999732     222356778999999999754

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=96.61  E-value=0.0028  Score=58.63  Aligned_cols=61  Identities=25%  Similarity=0.342  Sum_probs=41.9

Q ss_pred             ccccccccccccC----------------CCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----cHHHHHHHHHHHHHHHH
Q 028609           67 DESKELSFYDLLG----------------IPESVSLVEIKQAYKQMARKYHPDVSPPD-----RVEEYTQRFIRVQEAYE  125 (206)
Q Consensus        67 ~~~~~~d~Y~iLg----------------v~~~as~~eIkkaYr~l~~~~HPDk~~~~-----~~~~a~~~f~~I~~Ay~  125 (206)
                      ..++..|.-.+|.                |.--++.++|||+||+..+.+||||.+..     .+-.|++.|..+++|++
T Consensus       367 ~~GKE~NIRALLSTLh~VLW~es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn  446 (453)
T KOG0431|consen  367 SEGKEGNIRALLSTLHYVLWPESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWN  446 (453)
T ss_pred             cccccccHHHHHHHHhHhhcCccCcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence            3566666666663                22237899999999999999999996543     12235566777777766


Q ss_pred             Hc
Q 028609          126 TL  127 (206)
Q Consensus       126 vL  127 (206)
                      ..
T Consensus       447 ~f  448 (453)
T KOG0431|consen  447 KF  448 (453)
T ss_pred             hh
Confidence            43

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=94.09  E-value=0.094  Score=40.49  Aligned_cols=52  Identities=23%  Similarity=0.254  Sum_probs=37.1

Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCCh
Q 028609           73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDP  130 (206)
Q Consensus        73 d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp  130 (206)
                      .-..||||++..+.++|.+.|.+|-...+|++.+..-      .-..|..|.+.|..+
T Consensus        59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfY------LQSKV~rAKErl~~E  110 (127)
T PF03656_consen   59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFY------LQSKVFRAKERLEQE  110 (127)
T ss_dssp             HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HH------HHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHH------HHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999886542      234688888877533

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=90.40  E-value=0.81  Score=30.36  Aligned_cols=26  Identities=27%  Similarity=0.376  Sum_probs=24.0

Q ss_pred             ccccccCCCCCCCHHHHHHHHHHHHH
Q 028609           73 SFYDLLGIPESVSLVEIKQAYKQMAR   98 (206)
Q Consensus        73 d~Y~iLgv~~~as~~eIkkaYr~l~~   98 (206)
                      +-|++|||+++.+.+.|-.+|.....
T Consensus         6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    6 EAYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            56999999999999999999998887

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=86.22  E-value=0.78  Score=40.53  Aligned_cols=57  Identities=26%  Similarity=0.247  Sum_probs=42.7

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhh
Q 028609           84 VSLVEIKQAYKQMARKYHPDVSPP--DRVEEYTQRFIRVQEAYETLSDPGLRALYDRDL  140 (206)
Q Consensus        84 as~~eIkkaYr~l~~~~HPDk~~~--~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~  140 (206)
                      ++..+|..+|+..++..||++...  .......+.|+.|.+||.||.+...|...|.+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~   62 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD   62 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence            567889999999999999998742  111133467999999999999876655665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	206
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		7e-11
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		3e-10
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		3e-10
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		4e-10
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		2e-09
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		2e-09
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		2e-09
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		3e-09
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		4e-09
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		5e-09
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		6e-09
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		2e-08
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		3e-08
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		3e-08
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		5e-08
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		1e-07
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		1e-07
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		3e-07
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		4e-07
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		2e-05
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		2e-05
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		3e-05
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		4e-04

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 73  SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
           ++Y++LG+  S S  +IK+AY+++A ++HPD + PD  EE  ++F  V EAYE LSD   
Sbjct: 10  NYYEVLGVQASASPEDIKKAYRKLALRWHPDKN-PDNKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 133 RALYDR 138
           R+LYDR
Sbjct: 69  RSLYDR 74

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Query: 70  KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129
           KE ++YD+LG+  + +  E+K+AY+++A KYHPD +P +      ++F ++ +AYE LSD
Sbjct: 4   KETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE-----GEKFKQISQAYEVLSD 58
Query: 130 PGLRALYDR 138
              R LYD+
Sbjct: 59  AKKRELYDK 67

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 7/81 (8%)
Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +YD+LG+P+S S  +IK+A+ ++A KYHPD +     E    +F  + EAYETLSD   R
Sbjct: 9   YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAE---AKFREIAEAYETLSDANRR 65
Query: 134 ALYDRDLSMGLHLAFSARRRQ 154
             YD   ++G H AF++ + Q
Sbjct: 66  KEYD---TLG-HSAFTSGKGQ 82

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 72  LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPG 131
           + +Y++L +P   S   IK+AY+++A K+HPD +P ++ EE  +RF +V EAYE LSD  
Sbjct: 9   VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENK-EEAERRFKQVAEAYEVLSDAK 67
Query: 132 LRALYDR 138
            R +YDR
Sbjct: 68  KRDIYDR 74

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 73  SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
           S+Y++L +P S S  +IK+AY++ A ++HPD + PD  E   ++F  V EAYE LSD   
Sbjct: 3   SYYEILDVPRSASADDIKKAYRRKALQWHPDKN-PDNKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 133 RALYDRDLSMGL 144
           R +YDR    GL
Sbjct: 62  REIYDRYGREGL 73

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 70  KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129
           KE  +YD+LG+    S  E+K+AY++MA K+HPD +P     +  ++F ++ +AYE LSD
Sbjct: 6   KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNP-----DGAEQFKQISQAYEVLSD 60
Query: 130 PGLRALYDR 138
              R +YD+
Sbjct: 61  EKKRQIYDQ 69

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 70  KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129
           KE   YDLLG+  S +  E+K+ Y++ A KYHPD    D     T++F  + EA+E L+D
Sbjct: 6   KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-----TEKFKEISEAFEILND 60
Query: 130 PGLRALYDR 138
           P  R +YD+
Sbjct: 61  PQKREIYDQ 69

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y +LG+P + S  EIK+AY Q+A+KYHPD +  D   +  ++F ++ EAYE LSD   R
Sbjct: 9   YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD--PKAKEKFSQLAEAYEVLSDEVKR 66
Query: 134 ALYD 137
             YD
Sbjct: 67  KQYD 70

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+ ++    EI++AYK++A KYHPD +  D+  E   +F  ++EAYE L+D   R
Sbjct: 5   YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVLTDSQKR 62
Query: 134 ALYDR 138
           A YD+
Sbjct: 63  AAYDQ 67

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+ ++    EI++AYK++A KYHPD +  D+  E   +F  ++EAYE L+D   R
Sbjct: 5   YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVLTDSQKR 62
Query: 134 ALYDR 138
           A YD+
Sbjct: 63  AAYDQ 67

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+ ++    EI++AYK++A KYHPD +  D+  E   +F  ++EAYE L+D   R
Sbjct: 5   YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVLTDSQKR 62
Query: 134 ALYDR 138
           A YD+
Sbjct: 63  AAYDQ 67

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 73  SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
           S Y +LG+ ++ +  +IK++Y+++A KYHPD +P +   E   +F  +  A+  L+D   
Sbjct: 18  SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN--PEAADKFKEINNAHAILTDATK 75
Query: 133 RALYDRDLSMGLHLA 147
           R +YD+  S+GL++A
Sbjct: 76  RNIYDKYGSLGLYVA 90

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 73  SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
           +FY LLG+ ++ S  EI+QA+K++A K HPD +P +        F+++  AYE L D  L
Sbjct: 3   NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDL 60
Query: 133 RALYDRDLSMGL 144
           R  YD+    GL
Sbjct: 61  RKKYDKYGEKGL 72

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y ++G+  +  L  IK AY+++ARKYHPDVS     E    RF  V EA+E LSD   R
Sbjct: 7   YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAE---ARFKEVAEAWEVLSDEQRR 63
Query: 134 ALYDR 138
           A YD+
Sbjct: 64  AEYDQ 68

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 73  SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
           +FY LLG+ ++ S  EI+QA+K++A K HPD +P +        F+++  AYE L D  L
Sbjct: 22  NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDL 79
Query: 133 RALYDRDLSMGL 144
           R  YD+    GL
Sbjct: 80  RKKYDKYGEKGL 91

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y  LG+    S  EIK+AY++ A +YHPD +     EE   +F  + EAY+ LSDP  R
Sbjct: 5   YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEE---KFKEIAEAYDVLSDPRKR 61
Query: 134 ALYDRDLSMGL 144
            ++DR    GL
Sbjct: 62  EIFDRYGEEGL 72

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 73  SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
           + YDLLG+P + +  +IK AY +    YHPD +      E  +RF R+ +AY  L    L
Sbjct: 18  ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS--AEAAERFTRISQAYVVLGSATL 75
Query: 133 RALYDRDL 140
           R  YDR L
Sbjct: 76  RRKYDRGL 83

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 75  YDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRA 134
           Y +LG+  + S  +IK+AYK++AR++HPD +     E+   RFI++ +AYE LS+   R 
Sbjct: 20  YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAED---RFIQISKAYEILSNEEKRT 76
Query: 135 LYDR 138
            YD 
Sbjct: 77  NYDH 80

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y +LG+  +  L  IK AY+++ARKYHPDVS  +  E    +F  + EA+E L D   R
Sbjct: 30  YYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEA---KFKDLAEAWEVLKDEQRR 86
Query: 134 ALYDR 138
           A YD+
Sbjct: 87  AEYDQ 91

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+    S  ++K+AY+++A K+HPD    +     T+ F  +  AY  LS+P  R
Sbjct: 9   YYEILGVSRGASDEDLKKAYRRLALKFHPD---KNHAPGATEAFKAIGTAYAVLSNPEKR 65
Query: 134 ALYDR 138
             YD+
Sbjct: 66  KQYDQ 70

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVS----PPDRVEEYTQRFIRVQEAYETLSD 129
           +Y +LG   S ++ ++KQ Y+++   YHPD      P   VEE  Q+FI + +A++ L +
Sbjct: 12  WYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN 71
Query: 130 PGLRALYD 137
              +  YD
Sbjct: 72  EETKREYD 79

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVS----PPDRVEEYTQRFIRVQEAYETLSD 129
           +Y +LG   S ++ ++KQ Y+++   YHPD      P   +EE  Q+FI + +A++ L +
Sbjct: 18  WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
Query: 130 PGLRALYD 137
              +  YD
Sbjct: 78  EETKKKYD 85

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 65  VVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPD-VSPPDRVEEYTQRFIRVQEA 123
           ++ +S++  +Y +LG+  +    EI +AY+++A ++HPD     +  ++  ++FI +  A
Sbjct: 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434
Query: 124 YETLSDPGLRALYD 137
            E LSDP +R  +D
Sbjct: 435 KEVLSDPEMRKKFD 448

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	2e-23
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	5e-23
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	7e-22
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	3e-21
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	4e-21
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	6e-21
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	6e-21
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	6e-21
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	8e-21
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	9e-21
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	1e-20
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	2e-20
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	2e-20
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	2e-20
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	3e-20
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	9e-20
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	1e-19
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	2e-19
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	2e-19
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-18
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-18
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	1e-17
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	9e-17
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	2e-16
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	3e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-15
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	6e-15
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	3e-13
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	1e-12
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	4e-10
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	4e-10
2guz_A	71	Mitochondrial import inner membrane translocase su	2e-07
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	1e-06
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 94.2 bits (235), Expect = 2e-23
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y +LG+  +  L  IK AY+++ARKYHPDVS  +  E    +F  + EA+E L D   R
Sbjct: 30  YYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEA---KFKDLAEAWEVLKDEQRR 86

Query: 134 ALYDRDLSMGLHLAFSARRRQQNDDFQ 160
           A YD+         F  +R+     + 
Sbjct: 87  AEYDQLWQHRNDPGFGRQRQTHEQSYS 113

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 89.1 bits (221), Expect = 5e-23
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 66  VDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDR----VEEYTQRFIRVQ 121
           V++  +  +Y +LG   S ++ ++KQ Y+++   YHPD    D     VEE  Q+FI + 
Sbjct: 4   VEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEID 63

Query: 122 EAYETLSDPGLRALYDR 138
           +A++ L +   +  YD 
Sbjct: 64  QAWKILGNEETKREYDL 80

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 88.0 bits (218), Expect = 7e-22
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           FY LLG+ ++ S  EI+QA+K++A K HPD +P +        F+++  AYE L D  LR
Sbjct: 4   FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAH--GDFLKINRAYEVLKDEDLR 61

Query: 134 ALYDRDLSMGLHLAFSARRRQQNDDFQ 160
             YD+    G        +  Q + + 
Sbjct: 62  KKYDK---YG-EKGLEDNQGGQYESWS 84

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 82.3 bits (204), Expect = 3e-21
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+    S  ++K+AY+++A K+HPD +      E    F  +  AY  LS+P  R
Sbjct: 9   YYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATE---AFKAIGTAYAVLSNPEKR 65

Query: 134 ALYDR 138
             YD+
Sbjct: 66  KQYDQ 70

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 82.4 bits (204), Expect = 4e-21
 Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 3/65 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
            Y +LG+  + S  +IK+AYK++AR++HPD +     E+   RFI++ +AYE LS+   R
Sbjct: 19  PYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAED---RFIQISKAYEILSNEEKR 75

Query: 134 ALYDR 138
             YD 
Sbjct: 76  TNYDH 80

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 81.5 bits (202), Expect = 6e-21
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y  LG+    S  EIK+AY++ A +YHPD +     EE   +F  + EAY+ LSDP  R
Sbjct: 5   YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEE---KFKEIAEAYDVLSDPRKR 61

Query: 134 ALYDR 138
            ++DR
Sbjct: 62  EIFDR 66

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 82.5 bits (204), Expect = 6e-21
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
            YDLLG+P + +  +IK AY +    YHPD +         +RF R+ +AY  L    LR
Sbjct: 19  LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAA--ERFTRISQAYVVLGSATLR 76

Query: 134 ALYDR 138
             YDR
Sbjct: 77  RKYDR 81

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 82.1 bits (203), Expect = 6e-21
 Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 57  GGTATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPD----RVEE 112
           G + ++   ++++ +  +Y +LG   S ++ ++KQ Y+++   YHPD    D     +EE
Sbjct: 1   GSSGSSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEE 60

Query: 113 YTQRFIRVQEAYETLSDPGLRALYDR 138
             Q+FI + +A++ L +   +  YD 
Sbjct: 61  CMQKFIEIDQAWKILGNEETKKKYDL 86

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 82.5 bits (204), Expect = 8e-21
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y LLG  E  S+ +I   +K  A + HPD  P +      + F ++Q+A E L++   R
Sbjct: 22  YYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAV--ETFQKLQKAKEILTNEESR 79

Query: 134 ALYDR 138
           A YD 
Sbjct: 80  ARYDH 84

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 81.1 bits (201), Expect = 9e-21
 Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 7/81 (8%)

Query: 58  GTATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRF 117
           G++ ++ +VD      +Y++L +P   S   IK+AY+++A K+HPD +P ++ EE  +RF
Sbjct: 1   GSSGSSGMVD------YYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENK-EEAERRF 53

Query: 118 IRVQEAYETLSDPGLRALYDR 138
            +V EAYE LSD   R +YDR
Sbjct: 54  KQVAEAYEVLSDAKKRDIYDR 74

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 80.8 bits (200), Expect = 1e-20
 Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y +LG+P + S  EIK+AY Q+A+KYHPD +  D   +  ++F ++ EAYE LSD   R
Sbjct: 9   YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAK--EKFSQLAEAYEVLSDEVKR 66

Query: 134 ALYDR 138
             YD 
Sbjct: 67  KQYDA 71

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 81.2 bits (201), Expect = 2e-20
 Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++L +P S S  +IK+AY++ A ++HPD +P ++ E   ++F  V EAYE LSD   R
Sbjct: 4   YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNK-EFAEKKFKEVAEAYEVLSDKHKR 62

Query: 134 ALYDR 138
            +YDR
Sbjct: 63  EIYDR 67

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 80.7 bits (200), Expect = 2e-20
 Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 2/65 (3%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+ ++    EI++AYK++A KYHPD +  D+  E   +F  ++EAYE L+D   R
Sbjct: 5   YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAE--AKFKEIKEAYEVLTDSQKR 62

Query: 134 ALYDR 138
           A YD+
Sbjct: 63  AAYDQ 67

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 80.4 bits (199), Expect = 2e-20
 Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 3/65 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +YD+LG+P+S S  +IK+A+ ++A KYHPD +     E    +F  + EAYETLSD   R
Sbjct: 9   YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEA---KFREIAEAYETLSDANRR 65

Query: 134 ALYDR 138
             YD 
Sbjct: 66  KEYDT 70

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 80.5 bits (199), Expect = 3e-20
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 73  SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGL 132
           S Y +LG+ ++ +  +IK++Y+++A KYHPD +P +       +F  +  A+  L+D   
Sbjct: 18  SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAA--DKFKEINNAHAILTDATK 75

Query: 133 RALYDRDLSMGLHLAFSARRRQQNDDF 159
           R +YD+  S+GL++A        N  F
Sbjct: 76  RNIYDKYGSLGLYVAEQFGEENVNTYF 102

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 78.9 bits (195), Expect = 9e-20
 Identities = 31/81 (38%), Positives = 54/81 (66%), Gaps = 7/81 (8%)

Query: 58  GTATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRF 117
           G++ ++ + +      +Y++LG+  S S  +IK+AY+++A ++HPD +P ++ EE  ++F
Sbjct: 1   GSSGSSGMAN------YYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNK-EEAEKKF 53

Query: 118 IRVQEAYETLSDPGLRALYDR 138
             V EAYE LSD   R+LYDR
Sbjct: 54  KLVSEAYEVLSDSKKRSLYDR 74

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 78.9 bits (195), Expect = 1e-19
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 70  KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129
           KE   YDLLG+  S +  E+K+ Y++ A KYHPD    D      ++F  + EA+E L+D
Sbjct: 6   KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT-----EKFKEISEAFEILND 60

Query: 130 PGLRALYDR 138
           P  R +YD+
Sbjct: 61  PQKREIYDQ 69

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 79.0 bits (195), Expect = 2e-19
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 74  FYDLLGIP-ESVSLVEIKQAYKQMARKYHPDVSP-PDRVEEYTQRFIRVQEAYETLSDPG 131
            YD+L +  E     ++ +AY+ +ARK+HPD     +      +RF  +  AYETL D  
Sbjct: 17  CYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDE 76

Query: 132 LRALYDR 138
            +  YD 
Sbjct: 77  AKTNYDY 83

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 77.7 bits (192), Expect = 2e-19
 Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 70  KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129
           KE  +YD+LG+    S  E+K+AY++MA K+HPD +P     +  ++F ++ +AYE LSD
Sbjct: 6   KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNP-----DGAEQFKQISQAYEVLSD 60

Query: 130 PGLRALYDR 138
              R +YD+
Sbjct: 61  EKKRQIYDQ 69

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 82.1 bits (202), Expect = 2e-18
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           FY LLG+ ++ S  EI+QA+K++A K HPD +P +        F+++  AYE L D  LR
Sbjct: 23  FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDLR 80

Query: 134 ALYDRDLSMGLHLAFSARRRQQNDDFQVRSEWRNRWQSQLSELKRRSMNKDAGGNISWAA 193
             YD+    GL      +    +        + +    ++  L+RR  +        W  
Sbjct: 81  KKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDP--EIITLERREFDAAVNSGELWFV 138

Query: 194 RMRRKRDGLSQEL 206
                    S +L
Sbjct: 139 NFYSPGSSHSHDL 151

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 78.0 bits (192), Expect = 2e-18
 Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 69  SKELSFYDLLGIPE--SVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYET 126
            + L   DLLG+      ++  +++AY +  +++HPD    +      ++  ++   Y+ 
Sbjct: 8   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE------EKMKKMNTLYKK 61

Query: 127 LSDPGLRALYDR 138
           + D    A    
Sbjct: 62  MEDGVKYAHQPD 73

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 74.5 bits (183), Expect = 1e-17
 Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 10/75 (13%)

Query: 66  VDESKELSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEA 123
            +ES +L   DLLG+  S   ++  +++AY +  +++HPD    +      ++  ++   
Sbjct: 4   REESLQL--MDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE------EKMKKMNTL 55

Query: 124 YETLSDPGLRALYDR 138
           Y+ + D    A    
Sbjct: 56  YKKMEDGVKYAHQPD 70

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 70.1 bits (172), Expect = 2e-16
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
            +D+LG+    S  E+ +AY+++A   HPD       E+    F  V  A   L      
Sbjct: 29  SWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSED---AFKAVVNARTALLKNIKS 85

Query: 134 ALYD 137
               
Sbjct: 86  GPSS 89

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 71.9 bits (176), Expect = 3e-16
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 13/140 (9%)

Query: 72  LSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPDRVEE---YTQRFIRVQEAYET 126
           + ++ L G+P    +    +   ++ + R+YHPD        E     Q+   + +A++T
Sbjct: 1   MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60

Query: 127 LSDPGLRALYDRDLSMGLHLAFSARRRQQNDDFQVRSEWRNRWQSQLSELKRRSMNKDAG 186
           L  P +RA Y   L  G  LA      +       + E R                KD  
Sbjct: 61  LRHPLMRAEYLLSL-HGFDLASEQHTVRDTAFLMEQLELREELDEIEQA-------KDEA 112

Query: 187 GNISWAARMRRKRDGLSQEL 206
              S+  R+++  D   Q +
Sbjct: 113 RLESFIKRVKKMFDTRHQLM 132

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 72.4 bits (178), Expect = 3e-15
 Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 68  ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSP-PDRVEEYTQRFIRVQEAYET 126
           +S++  +Y +LG+  +    EI +AY+++A ++HPD     +  ++  ++FI +  A E 
Sbjct: 378 QSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEV 437

Query: 127 LSDPGLRALYDR 138
           LSDP +R  +D 
Sbjct: 438 LSDPEMRKKFDD 449

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 66.3 bits (162), Expect = 6e-15
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
              ++     +   E K+  +++  K+HPD + P+  +   + F  +Q     L     +
Sbjct: 18  VTSVVEQAWKLPESERKKIIRRLYLKWHPDKN-PENHDIANEVFKHLQNEINRLEK---Q 73

Query: 134 ALYDR 138
           A  D+
Sbjct: 74  AFLDQ 78

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 64.2 bits (156), Expect = 3e-13
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 12/93 (12%)

Query: 62  ATAVVDESKELSFYDLLGIPES-------VSLVEIKQAYKQMARKYHPDVSPPDRVEEYT 114
           + A+V      +FY+L             +    +++ Y+Q+  ++HPD       ++ +
Sbjct: 1   SNALVQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPD-----MAQQGS 55

Query: 115 QRFIRVQEAYETLSDPGLRALYDRDLSMGLHLA 147
           ++   + +AY TL DP  R+ Y   L   + L 
Sbjct: 56  EQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLT 88

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 62.8 bits (152), Expect = 1e-12
 Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 6/128 (4%)

Query: 62  ATAVVDESKELSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPDRVEE---YTQR 116
             A+        ++ L+    S  V   +++  Y+Q+ R  HPD        E     + 
Sbjct: 33  CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH 92

Query: 117 FIRVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRRQQNDDFQVRSEWRNRWQSQLSEL 176
              V +AY+TL  P  R LY      G+ +                 E   +     SE 
Sbjct: 93  STLVNDAYKTLLAPLSRGLYLLK-LHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEA 151

Query: 177 KRRSMNKD 184
             + +   
Sbjct: 152 AMKEIESI 159

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 53.4 bits (128), Expect = 4e-10
 Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 10/77 (12%)

Query: 67  DESKELSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAY 124
            + + L   +LL +P         ++QAYKQ +   HPD                +   +
Sbjct: 8   ADKERL--LELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS------HALMQELNSLW 59

Query: 125 ETLSDPGLRALYDRDLS 141
            T          +   +
Sbjct: 60  GTFKTEVYNLRMNLGGT 76

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 55.6 bits (133), Expect = 4e-10
 Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 73  SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEY-TQRFIRVQEAYETLSDPG 131
           + +  +G+ + V+  ++K+ Y++     HPD +     E+Y    F+ + +A+    + G
Sbjct: 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 177

Query: 132 LRALY 136
            + LY
Sbjct: 178 QKPLY 182

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 9/60 (15%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 75  YDLLGI-PESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
             +L +   +++  ++K+ ++++    HPD         +     ++ EA + L   G+ 
Sbjct: 17  LQILNLTENTLTKKKLKEVHRKIMLANHPDKGG----SPFLAT--KINEAKDFLEKRGIS 70

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 44.2 bits (104), Expect = 1e-06
 Identities = 10/58 (17%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 73  SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQR-FIRVQEAYETLSD 129
           + +  +G+ + V+  ++K+ Y++     HP  +     E+Y +  F+ + +A+    +
Sbjct: 34  TKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 9/62 (14%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 75  YDLLGIPESVSLVEIKQAYKQMARKYHPD-----VSPPDRVEEYTQRFIRVQEAYETLSD 129
           +  + + + +    ++++Y++     HPD      +  ++     + F  +QEA++  + 
Sbjct: 43  WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102

Query: 130 PG 131
            G
Sbjct: 103 LG 104

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 32/135 (23%)

Query: 67  DESKELSFYDLLGIPESVSL-VEIKQ----AYKQMARKYHPDVSPPDRVEEYTQ-RFIRV 120
           DE K L     L       L  E+          +A      ++  D  +     +   +
Sbjct: 301 DEVKSL-LLKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 121 QEA-YETLSDPGLRALYDRDLSMGLHLAFSARRRQQNDDFQVRSE-----WRNRW----Q 170
            E+    L     R ++D  LS+     F            + +      W +       
Sbjct: 359 IESSLNVLEPAEYRKMFD-RLSV-----F-------PPSAHIPTILLSLIWFDVIKSDVM 405

Query: 171 SQLSELKRRSM-NKD 184
             +++L + S+  K 
Sbjct: 406 VVVNKLHKYSLVEKQ 420

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.88
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.87
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.87
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.87
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.86
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.86
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.86
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.86
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.86
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.86
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.85
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.85
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.85
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.85
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.84
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.84
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.83
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.83
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.83
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.8
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.79
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.79
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.76
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.72
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.72
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.72
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.71
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.71
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.69
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.65
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.65
2guz_A	71	Mitochondrial import inner membrane translocase su	99.63
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.62
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.16
2guz_B	65	Mitochondrial import inner membrane translocase su	98.87
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	90.85

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.88  E-value=1.7e-22  Score=150.80  Aligned_cols=76  Identities=33%  Similarity=0.612  Sum_probs=69.0

Q ss_pred             cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      .....|||+||||+++++.++||++|++|++++|||+++..  +++.++|+.|++||+||+||.+|..||.++..|+.
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~--~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~   88 (109)
T 2ctw_A           13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN--PEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY   88 (109)
T ss_dssp             TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC--HHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence            34567999999999999999999999999999999999764  46789999999999999999999999999877655

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.87  E-value=1.7e-22  Score=141.64  Aligned_cols=72  Identities=38%  Similarity=0.642  Sum_probs=66.2

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ..|||+||||+++++.++||++|+++++++|||+++..   .+.+.|+.|++||++|+||.+|..||.++..|+.
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~---~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   73 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP---GAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK   73 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT---THHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---cHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence            36899999999999999999999999999999999764   4568999999999999999999999999887765

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=2.6e-22  Score=142.21  Aligned_cols=74  Identities=42%  Similarity=0.663  Sum_probs=67.2

Q ss_pred             cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcc
Q 028609           70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGL  144 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~  144 (206)
                      ...|||+||||+++++.++||++|+++++++|||+++.. .+.+.+.|+.|++||+||+||.+|..||.++..|+
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   80 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN-KEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS   80 (82)
T ss_dssp             SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT-HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence            357999999999999999999999999999999998765 35778999999999999999999999999987654

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=1.5e-22  Score=142.48  Aligned_cols=73  Identities=41%  Similarity=0.630  Sum_probs=66.0

Q ss_pred             ccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhc
Q 028609           69 SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMG  143 (206)
Q Consensus        69 ~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~  143 (206)
                      ....|||+||||+++++.++||++|+++++++|||+++..  +.+.+.|+.|++||+||+||.+|..||.++..+
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD--PKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSC--TTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--HHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            3467999999999999999999999999999999998754  356789999999999999999999999988654

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=5.6e-22  Score=145.53  Aligned_cols=72  Identities=38%  Similarity=0.644  Sum_probs=65.3

Q ss_pred             cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhh
Q 028609           68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS  141 (206)
Q Consensus        68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~  141 (206)
                      .....|||+||||+++++.++||++|++|+++||||+++..  +.+.++|+.|++||+||+||.+|..||..+.
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   84 (99)
T 2yua_A           13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS--AEAAERFTRISQAYVVLGSATLRRKYDRGLL   84 (99)
T ss_dssp             SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC--SHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred             CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--HHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            34567999999999999999999999999999999999754  3577899999999999999999999998764

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=3.9e-22  Score=140.09  Aligned_cols=71  Identities=32%  Similarity=0.532  Sum_probs=65.3

Q ss_pred             cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhc
Q 028609           70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMG  143 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~  143 (206)
                      ...|||+||||+++++.++||++|+++++++|||++...   .+.+.|+.|++||+||+||.+|..||.++..+
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAP---GATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSH---HHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---cHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            457999999999999999999999999999999999763   56789999999999999999999999988654

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=4.6e-22  Score=149.12  Aligned_cols=76  Identities=29%  Similarity=0.412  Sum_probs=69.0

Q ss_pred             cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      .....|||+||||+++++.++||++|++|++++|||+++..  +.+.+.|+.|++||+||+||.+|..||.++..++.
T Consensus        16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~   91 (112)
T 2ctq_A           16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN--PKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS   91 (112)
T ss_dssp             CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTC--STHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred             ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence            34568999999999999999999999999999999999754  25778999999999999999999999999987765

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.86  E-value=3.2e-22  Score=145.10  Aligned_cols=74  Identities=30%  Similarity=0.591  Sum_probs=66.5

Q ss_pred             cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----cHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhh
Q 028609           68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPD----RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS  141 (206)
Q Consensus        68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~----~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~  141 (206)
                      .....|||+||||+++++.++||++|++++++||||+++..    ....+.+.|+.|++||+||+||.+|..||..+.
T Consensus        12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            34568999999999999999999999999999999998642    335678999999999999999999999999875

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.86  E-value=6.2e-22  Score=142.27  Aligned_cols=73  Identities=36%  Similarity=0.579  Sum_probs=65.9

Q ss_pred             cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhc
Q 028609           68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMG  143 (206)
Q Consensus        68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~  143 (206)
                      .....|||+||||+++++.++||++|+++++++|||+++..   .+.+.|+.|++||++|+||.+|..||.++..+
T Consensus        13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDP---GAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCST---THHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh---hHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            34567999999999999999999999999999999999764   45689999999999999999999999987643

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=4.7e-22  Score=142.92  Aligned_cols=74  Identities=39%  Similarity=0.624  Sum_probs=67.3

Q ss_pred             ccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           69 SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        69 ~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ....|||+||||+++++.++||++|++|++++|||+++.   +.+.+.|+.|++||+||+||.+|..||.++..++.
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   77 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS---PDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFT   77 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS---HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHT
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            345799999999999999999999999999999999984   46788999999999999999999999999876654

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.85  E-value=9.1e-22  Score=144.59  Aligned_cols=74  Identities=42%  Similarity=0.676  Sum_probs=65.3

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccc
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHL  146 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~  146 (206)
                      .|||+||||+++++.++||++|+++++++|||+++... +.+.+.|+.|++||+||+||.+|..||.++..|+..
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~-~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~   75 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNK-EFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG   75 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCC-HHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence            58999999999999999999999999999999987653 567899999999999999999999999998877653

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.85  E-value=1.3e-21  Score=135.76  Aligned_cols=67  Identities=42%  Similarity=0.750  Sum_probs=61.4

Q ss_pred             cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhh
Q 028609           70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS  141 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~  141 (206)
                      ...|||+||||+++++.++||++|+++++++|||+++..     .+.|+.|++||+||+||.+|..||.+|.
T Consensus         6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG-----AEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC-----HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH-----HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            457999999999999999999999999999999999754     3689999999999999999999999874

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.85  E-value=2.4e-21  Score=159.77  Aligned_cols=102  Identities=21%  Similarity=0.299  Sum_probs=81.0

Q ss_pred             ccccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhc
Q 028609           69 SKELSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPD---RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMG  143 (206)
Q Consensus        69 ~~~~d~Y~iLgv~~~--as~~eIkkaYr~l~~~~HPDk~~~~---~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~  143 (206)
                      ....|||+||||+++  ++.++||++||+|+++||||+++..   ++..|.++|+.|++||+||+||.+|+.||..+. |
T Consensus        40 ~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~-G  118 (207)
T 3bvo_A           40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH-G  118 (207)
T ss_dssp             CTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT-T
T ss_pred             CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc-C
Confidence            346799999999987  7899999999999999999998754   234577899999999999999999999998764 5


Q ss_pred             ccchhhhhcccCchhhhhhHHHHHHHHH
Q 028609          144 LHLAFSARRRQQNDDFQVRSEWRNRWQS  171 (206)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (206)
                      ...........+.+.++..++|++.|..
T Consensus       119 ~~~~~e~~~~~d~~fLme~me~~E~le~  146 (207)
T 3bvo_A          119 IEIPERTDYEMDRQFLIEIMEINEKLAE  146 (207)
T ss_dssp             CCCCSSCSSSSCHHHHHHHHHHHHHHHH
T ss_pred             CCcccccccCCCHHHHHHHHHHHHHHHH
Confidence            5433322233344566778999988763

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=1.3e-21  Score=141.61  Aligned_cols=75  Identities=40%  Similarity=0.682  Sum_probs=67.9

Q ss_pred             cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ...|||+||||+++++.++||++|++|+++||||+++... +.+.+.|+.|++||+||+||.+|..||..+..++.
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   81 (92)
T 2dmx_A            7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNK-EEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWR   81 (92)
T ss_dssp             CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCS-HHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSC
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            3579999999999999999999999999999999987653 57789999999999999999999999999876654

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.84  E-value=2.6e-21  Score=144.25  Aligned_cols=72  Identities=31%  Similarity=0.425  Sum_probs=66.3

Q ss_pred             cccccccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhh
Q 028609           70 KELSFYDLLGIPESV-SLVEIKQAYKQMARKYHPDVSPP-DRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS  141 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~a-s~~eIkkaYr~l~~~~HPDk~~~-~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~  141 (206)
                      ...|||+||||++++ +.++||++|+++++++|||+++. ...+.+.+.|+.|++||+||+||.+|..||..+.
T Consensus        13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~   86 (109)
T 2qsa_A           13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD   86 (109)
T ss_dssp             TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            467999999999999 99999999999999999999875 4446788999999999999999999999999875

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.83  E-value=4.8e-21  Score=138.78  Aligned_cols=71  Identities=41%  Similarity=0.680  Sum_probs=64.5

Q ss_pred             cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      ...|||+||||+++++.++||++|++|++++|||+++..     .+.|+.|++||+||+||.+|..||.++..+..
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   76 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-----TEKFKEISEAFEILNDPQKREIYDQYGLEAAR   76 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC-----HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHH
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-----HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhh
Confidence            457999999999999999999999999999999999754     25899999999999999999999999876654

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.83  E-value=1e-21  Score=145.06  Aligned_cols=74  Identities=36%  Similarity=0.653  Sum_probs=67.1

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHL  146 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~  146 (206)
                      ..|||+||||+++++.++||++|++|++++|||+++..  +++.++|+.|++||+||+||.+|..||.++..++..
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~   75 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD--KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ   75 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT--CTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcc
Confidence            36899999999999999999999999999999998754  256789999999999999999999999999877653

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.83  E-value=8.1e-21  Score=152.34  Aligned_cols=98  Identities=22%  Similarity=0.407  Sum_probs=78.1

Q ss_pred             cccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc---HHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccc
Q 028609           72 LSFYDLLGIPESV--SLVEIKQAYKQMARKYHPDVSPPDR---VEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHL  146 (206)
Q Consensus        72 ~d~Y~iLgv~~~a--s~~eIkkaYr~l~~~~HPDk~~~~~---~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~  146 (206)
                      .|||+||||++++  +..+||++||+++++||||+++...   +..|.++|..|++||+||+||.+|+.||..+. |...
T Consensus         1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~-g~~~   79 (171)
T 1fpo_A            1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH-GFDL   79 (171)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT-TCCT
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc-CCCc
Confidence            3899999999999  9999999999999999999987643   33577899999999999999999999999876 5544


Q ss_pred             hhhhhcccCchhhhhhHHHHHHHH
Q 028609          147 AFSARRRQQNDDFQVRSEWRNRWQ  170 (206)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~  170 (206)
                      ........+...++..++|++...
T Consensus        80 ~~e~~~~~d~~fLme~me~rE~le  103 (171)
T 1fpo_A           80 ASEQHTVRDTAFLMEQLELREELD  103 (171)
T ss_dssp             TCSSSCCSCHHHHHHHHHHHHHHH
T ss_pred             cccccccCCHHHHHHHHHHHHHHH
Confidence            332223333446677888877543

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.80  E-value=5.4e-20  Score=145.01  Aligned_cols=74  Identities=30%  Similarity=0.584  Sum_probs=66.1

Q ss_pred             cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----cHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhh
Q 028609           68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPD----RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS  141 (206)
Q Consensus        68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~----~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~  141 (206)
                      .....|||+||||+++++.++||++|+++++++|||+++..    .++.|.+.|+.|++||+||+||.+|+.||..+.
T Consensus         6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~   83 (155)
T 2l6l_A            6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC   83 (155)
T ss_dssp             CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred             cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            34567999999999999999999999999999999998654    235678999999999999999999999998775

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.79  E-value=6.4e-20  Score=148.33  Aligned_cols=98  Identities=19%  Similarity=0.343  Sum_probs=79.2

Q ss_pred             ccccccccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhh
Q 028609           68 ESKELSFYDLL------GIPE-SVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDL  140 (206)
Q Consensus        68 ~~~~~d~Y~iL------gv~~-~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~  140 (206)
                      .....|||+||      |+++ +++.++||++||+|+++||||+++.     +.++|+.|++||+||+||.+|+.||..+
T Consensus         7 ~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-----a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            7 RRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-----GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-----CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-----HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            34457999999      4765 8999999999999999999999875     3468999999999999999999999988


Q ss_pred             hhcccchhhh----hcccCchhhhhhHHHHHHHH
Q 028609          141 SMGLHLAFSA----RRRQQNDDFQVRSEWRNRWQ  170 (206)
Q Consensus       141 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  170 (206)
                      ..|+......    ....+...++.+++|++...
T Consensus        82 ~~g~~~~~e~~~~~~~~~d~~fLme~me~rE~le  115 (181)
T 3uo3_A           82 LRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELS  115 (181)
T ss_dssp             HHCCCTTSHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HhCCCccccccccccccCCHHHHHHHHHHHHHHH
Confidence            5577655433    23344557788888888654

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.79  E-value=8.1e-20  Score=148.85  Aligned_cols=72  Identities=40%  Similarity=0.699  Sum_probs=66.1

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      .|||+||||+++|+.++||+|||++++++|||+++..  +++.++|+.|++||++|+||.+|+.||.++..++.
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~--~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~   73 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE   73 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTC--TTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence            5899999999999999999999999999999999754  35778999999999999999999999999877655

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=2.2e-19  Score=129.53  Aligned_cols=62  Identities=24%  Similarity=0.315  Sum_probs=56.6

Q ss_pred             cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHH
Q 028609           70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRA  134 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~  134 (206)
                      ...|||+||||+++++.++||++|++|+++||||+++..   .+.+.|+.|++||++|+||.+|.
T Consensus        25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~---~~~~~f~~i~~Ay~~L~d~~~R~   86 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP---GSEDAFKAVVNARTALLKNIKSG   86 (90)
T ss_dssp             TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCT---THHHHHHHHHHHHHHHHHHHCCS
T ss_pred             cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc---cHHHHHHHHHHHHHHHCCccccc
Confidence            357999999999999999999999999999999999764   45678999999999999998875

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.72  E-value=8.8e-19  Score=123.55  Aligned_cols=67  Identities=19%  Similarity=0.250  Sum_probs=58.0

Q ss_pred             cccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhc
Q 028609           70 KELSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMG  143 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~--as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~  143 (206)
                      ...++|+||||+++  ++.++||++||+|++++|||+++.      .++|++|++||++|+|+.+|..+ .++..|
T Consensus         9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~------~~~f~~i~~AYe~L~~~~~r~~~-~~g~~~   77 (79)
T 1faf_A            9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS------HALMQELNSLWGTFKTEVYNLRM-NLGGTG   77 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC------HHHHHHHHHHHHHHHHHHHHHTT-CCSSCC
T ss_pred             hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------HHHHHHHHHHHHHHhhHHHHHHH-hcCCcc
Confidence            34689999999999  999999999999999999999864      25899999999999999999873 354433

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.72  E-value=1e-19  Score=136.87  Aligned_cols=65  Identities=22%  Similarity=0.334  Sum_probs=59.7

Q ss_pred             ccccccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhh
Q 028609           71 ELSFYDLLGIPESVSL--VEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS  141 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~--~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~  141 (206)
                      ..+||+||||+++++.  ++||+|||+|++++|||+++..      ++|+.|++||+||+||.+|+.||.++.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~------e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE------EKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT------TTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccH------HHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            4689999999999999  9999999999999999998763      579999999999999999999997653

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.72  E-value=1.5e-18  Score=124.79  Aligned_cols=65  Identities=17%  Similarity=0.228  Sum_probs=58.0

Q ss_pred             cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHH
Q 028609           68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR  133 (206)
Q Consensus        68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R  133 (206)
                      .....++|+||||+++|+.++||+||++|+++||||+++... +.+.++|+.|++||+||+|...|
T Consensus        12 ~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~-~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENH-DIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             SSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCH-HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCch-HHHHHHHHHHHHHHHHHHhhccc
Confidence            445578999999999999999999999999999999987653 56889999999999999988666

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.71  E-value=5.3e-19  Score=154.95  Aligned_cols=70  Identities=39%  Similarity=0.640  Sum_probs=0.0

Q ss_pred             cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhh
Q 028609           70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSM  142 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~  142 (206)
                      ...|||+||||+++|+.++||+|||+|+++||||+++..   .|.++|++|++||+||+||.+|+.||.++..
T Consensus        26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~---~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~   95 (329)
T 3lz8_A           26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN---DAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH   95 (329)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCCh---HHHHHHHHHHHHHHHhhhhhhhcccchhhcc
Confidence            457999999999999999999999999999999998754   5678999999999999999999999998543

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.71  E-value=4.6e-19  Score=142.21  Aligned_cols=66  Identities=21%  Similarity=0.371  Sum_probs=58.1

Q ss_pred             cccccccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhh
Q 028609           70 KELSFYDLLGIPESVS--LVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS  141 (206)
Q Consensus        70 ~~~d~Y~iLgv~~~as--~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~  141 (206)
                      ...|||+||||+++|+  .++||+|||++++++|||++++.      ++|++|++||+||+||.+|+.||.+|.
T Consensus         9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~------e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E            9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE------EKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC------TTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH------HHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            4579999999999998  69999999999999999998763      479999999999999999999999875

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.69  E-value=3.3e-18  Score=138.03  Aligned_cols=66  Identities=18%  Similarity=0.404  Sum_probs=59.2

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccH-HHHHHHHHHHHHHHHHcCChhHHHHH
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRV-EEYTQRFIRVQEAYETLSDPGLRALY  136 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~-~~a~~~f~~I~~Ay~vLsdp~~R~~Y  136 (206)
                      ..|||+||||+++|+.++||+|||+++++||||+++.... ..|.+.|+.|++||+||+||.+|..|
T Consensus       116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            3699999999999999999999999999999999865432 24789999999999999999999876

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.65  E-value=2.7e-17  Score=119.03  Aligned_cols=58  Identities=14%  Similarity=0.301  Sum_probs=51.9

Q ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-HHHHHHHHHHHHHHHHHcCC
Q 028609           72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDR-VEEYTQRFIRVQEAYETLSD  129 (206)
Q Consensus        72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~-~~~a~~~f~~I~~Ay~vLsd  129 (206)
                      .++|++|||+++|+.++||+|||+++++||||++++.. ...|.++|+.|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999987643 23578899999999999964

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.65  E-value=2e-17  Score=122.85  Aligned_cols=62  Identities=15%  Similarity=0.179  Sum_probs=53.5

Q ss_pred             ccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----cHHHHHHHHHHHHHHHHHcCChh
Q 028609           69 SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPD-----RVEEYTQRFIRVQEAYETLSDPG  131 (206)
Q Consensus        69 ~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~-----~~~~a~~~f~~I~~Ay~vLsdp~  131 (206)
                      +...|||+|||++. |+.++||+|||+++++|||||++..     ....|.++|+.|++||+||+|+.
T Consensus        38 ~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           38 WSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             CTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            34579999999996 9999999999999999999997531     23357899999999999999985

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.63  E-value=4.6e-17  Score=112.37  Aligned_cols=57  Identities=18%  Similarity=0.304  Sum_probs=50.7

Q ss_pred             ccccccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHH
Q 028609           71 ELSFYDLLGIPE-SVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR  133 (206)
Q Consensus        71 ~~d~Y~iLgv~~-~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R  133 (206)
                      ..++|+||||++ +++.++||++||+|++++|||+++..      +.|+.|++||++|+|+..|
T Consensus        13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~------~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP------FLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCH------HHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH------HHHHHHHHHHHHHhhhhhc
Confidence            358999999999 79999999999999999999996542      4899999999999988654

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.62  E-value=3.5e-17  Score=156.29  Aligned_cols=77  Identities=38%  Similarity=0.646  Sum_probs=40.8

Q ss_pred             cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccc
Q 028609           68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHL  146 (206)
Q Consensus        68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~  146 (206)
                      .....|||+||||+++|+.++||+|||+|+++||||+++..  +.+.++|+.|++||++|+||.+|+.||.+|..|...
T Consensus        17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~--~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~   93 (780)
T 3apo_A           17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED   93 (780)
T ss_dssp             ------CHHHHTCCTTCCHHHHHHHHCC-------------------------CTHHHHHHSHHHHHHHTTC-------
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHHcChHHHHHHHhhccccccc
Confidence            34567999999999999999999999999999999998654  467789999999999999999999999998776653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.16  E-value=2e-11  Score=105.92  Aligned_cols=68  Identities=31%  Similarity=0.610  Sum_probs=57.7

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-HHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDR-VEEYTQRFIRVQEAYETLSDPGLRALYDR  138 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~-~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~  138 (206)
                      ..++|.+||+.+.++.++|+++|+++++.+|||+.+... +..+.+.|+.|++||++|+||.+|..||.
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            458999999999999999999999999999999987643 45688999999999999999999999996

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.87  E-value=1.5e-09  Score=73.38  Aligned_cols=51  Identities=18%  Similarity=0.127  Sum_probs=44.7

Q ss_pred             ccccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCC
Q 028609           73 SFYDLLGIPES---VSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD  129 (206)
Q Consensus        73 d~Y~iLgv~~~---as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsd  129 (206)
                      .-|.||||+++   ++.++|+++|++|....|||+.+..      ..+..|++|+++|..
T Consensus         5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~------yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF------YLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH------HHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH------HHHHHHHHHHHHHHH
Confidence            45899999999   9999999999999999999998664      357789999999853

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=90.85  E-value=0.15  Score=47.58  Aligned_cols=48  Identities=19%  Similarity=0.292  Sum_probs=37.8

Q ss_pred             ccccccccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHH
Q 028609           69 SKELSFYDLLGIPESVSL--VEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYET  126 (206)
Q Consensus        69 ~~~~d~Y~iLgv~~~as~--~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~v  126 (206)
                      ....+||.|||++.+...  .+|+++||++++..+++          .+++..|..|+.|
T Consensus       626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----------RHRYTLVDMANKV  675 (681)
T ss_dssp             SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----------HHHHHHHHHHHHH
T ss_pred             ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----------HHHHHHHHHhccc
Confidence            445569999999877655  67999999999977654          2578888888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	206
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	2e-16
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	1e-15
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	5e-15
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	3e-13
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	9e-13
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-11
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	1e-10
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-08

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.7 bits (170), Expect = 2e-16
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 57  GGTATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVE----E 112
           G + ++   ++++ +  +Y +LG   S ++ ++KQ Y+++   YHPD    D       E
Sbjct: 1   GSSGSSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEE 60

Query: 113 YTQRFIRVQEAYETLSDPGLRALYDRDLSMG 143
             Q+FI + +A++ L +   +  YD   S  
Sbjct: 61  CMQKFIEIDQAWKILGNEETKKKYDLQRSGP 91

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 67.0 bits (163), Expect = 1e-15
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 72  LSFYDLLGIPE--SVSLVEIKQAYKQMARKYHPDVSPPDRVEE---YTQRFIRVQEAYET 126
           + ++ L G+P    +    +   ++ + R+YHPD        E     Q+   + +A++T
Sbjct: 1   MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60

Query: 127 LSDPGLRALYDRDL 140
           L  P +RA Y   L
Sbjct: 61  LRHPLMRAEYLLSL 74

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.7 bits (160), Expect = 5e-15
 Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 47  KVKAKLNDAAGGT--------ATATAVVDESKELSFYDLLGIPESVSLVEIKQAYKQMAR 98
             K K+ +   G         +T   V+   +  + +  +G+ + V+  ++K+ Y++   
Sbjct: 2   PEKLKILEWIEGKERNIRALLSTMHTVLWAGE--TKWKPVGMADLVTPEQVKKVYRKAVL 59

Query: 99  KYHPDVSPPDRVEE-YTQRFIRVQEAYETLSDPGLRALY 136
             HPD +     E+     F+ + +A+    + G + LY
Sbjct: 60  VVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 98

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 60.4 bits (146), Expect = 3e-13
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y++LG+ ++    EI++AYK++A KYHPD +  D  +E   +F  ++EAYE L+D   R
Sbjct: 5   YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD--KEAEAKFKEIKEAYEVLTDSQKR 62

Query: 134 ALYDRDLSMGLH 145
           A YD+       
Sbjct: 63  AAYDQYGHAAFE 74

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 9e-13
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
           +Y  LG+    S  EIK+AY++ A +YHPD +     EE  +      EAY+ LSDP  R
Sbjct: 5   YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEI---AEAYDVLSDPRKR 61

Query: 134 ALYDRDLSMGL 144
            ++DR    GL
Sbjct: 62  EIFDRYGEEGL 72

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 55.8 bits (134), Expect = 2e-11
 Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 8/73 (10%)

Query: 68  ESKELSFYDLLGIPE--SVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYE 125
            + +    +LL +P         ++QAYKQ +   HPD                +   + 
Sbjct: 7   RADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH------ALMQELNSLWG 60

Query: 126 TLSDPGLRALYDR 138
           T          + 
Sbjct: 61  TFKTEVYNLRMNL 73

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 1e-10
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 74  FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLR 133
              ++     +   E K+  +++  K+HPD +P +  +   + F  +Q     L     +
Sbjct: 18  VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENH-DIANEVFKHLQNEINRLEK---Q 73

Query: 134 ALYDRDLSMGLHLAF 148
           A  D++        F
Sbjct: 74  AFLDQNADRASRRTF 88

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 49.4 bits (117), Expect = 1e-08
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 68  ESKELSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYE 125
             + L   DLLG+  S   ++  +++AY +  +++HPD           ++  ++   Y+
Sbjct: 4   REESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGG------DEEKMKKMNTLYK 57

Query: 126 TLSDPGLRALYDR 138
            + D    A    
Sbjct: 58  KMEDGVKYAHQPD 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.91
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.86
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.81
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.78
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.73
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.67
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.66

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=5.4e-25  Score=152.44  Aligned_cols=72  Identities=38%  Similarity=0.684  Sum_probs=66.1

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGL  144 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~  144 (206)
                      ..|||+||||+++|+.++||+||+++++++|||+++.+.  .+.+.|..|++||+||+||.+|..||.+|..++
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~--~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~   73 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF   73 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTC--HHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSC
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCCh--HHHHHHHHHHHHHHhcCCHHHHHHHHHhCcccc
Confidence            469999999999999999999999999999999987653  566789999999999999999999999987665

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-23  Score=145.56  Aligned_cols=72  Identities=38%  Similarity=0.642  Sum_probs=66.4

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH  145 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~  145 (206)
                      .+|||+||||+++|+.++|++||+++++++|||++..+   ++.+.|..|++||+||+||.+|+.||++|..|+.
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~---~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~   73 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP---GAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK   73 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT---THHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccch---hHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhc
Confidence            46999999999999999999999999999999998775   4567899999999999999999999999988764

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.2e-22  Score=146.28  Aligned_cols=75  Identities=29%  Similarity=0.595  Sum_probs=66.2

Q ss_pred             ccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----cHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhh
Q 028609           67 DESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPD----RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS  141 (206)
Q Consensus        67 ~~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~----~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~  141 (206)
                      ......|||+||||+++|+.++||++|++++++||||++...    ....+.+.|+.|++||+||+||.+|..||....
T Consensus        11 ~~~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~   89 (94)
T d1wjza_          11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             hhhhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccC
Confidence            344557999999999999999999999999999999997643    235678899999999999999999999998754

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.81  E-value=4.7e-22  Score=147.80  Aligned_cols=66  Identities=21%  Similarity=0.395  Sum_probs=60.2

Q ss_pred             ccccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhh
Q 028609           71 ELSFYDLLGIPESV--SLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSM  142 (206)
Q Consensus        71 ~~d~Y~iLgv~~~a--s~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~  142 (206)
                      ..+||+||||+++|  +.++||+||++|+++|||||+++.      ++|++|++||+||+||.+|+.||..+..
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~------e~F~~I~~AY~vLsd~~kR~~YD~~~~~   74 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE------EKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT------TTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH------HHHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence            56999999999998  788999999999999999999764      4699999999999999999999987644

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=6.8e-20  Score=126.59  Aligned_cols=70  Identities=24%  Similarity=0.506  Sum_probs=60.8

Q ss_pred             cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhh
Q 028609           72 LSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPD---RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS  141 (206)
Q Consensus        72 ~d~Y~iLgv~~~--as~~eIkkaYr~l~~~~HPDk~~~~---~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~  141 (206)
                      .|||+||||+++  ++.++||++|+++++.+|||+....   ....+.+.|..|++||+||+||.+|+.|+..+.
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~   75 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            489999999996  4589999999999999999996543   345578899999999999999999999987653

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.73  E-value=1.7e-19  Score=125.52  Aligned_cols=66  Identities=18%  Similarity=0.276  Sum_probs=59.3

Q ss_pred             ccccccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhh
Q 028609           69 SKELSFYDLLGIPESV--SLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDL  140 (206)
Q Consensus        69 ~~~~d~Y~iLgv~~~a--s~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~  140 (206)
                      ....+||+||||++++  +.++||+||+++++++|||++++.      ++|++|++||++|+|+.+|..||..+
T Consensus         8 ~~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~~------e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_           8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH------ALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCH------HHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCCH------HHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            3457999999999997  899999999999999999998653      47999999999999999999998654

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=3.3e-18  Score=123.61  Aligned_cols=68  Identities=18%  Similarity=0.370  Sum_probs=59.9

Q ss_pred             ccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-HHHHHHHHHHHHHHHHHcCChhHHHHH
Q 028609           69 SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDR-VEEYTQRFIRVQEAYETLSDPGLRALY  136 (206)
Q Consensus        69 ~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~-~~~a~~~f~~I~~Ay~vLsdp~~R~~Y  136 (206)
                      +...++|++|||...++.++||+||+++++.+|||+++... ...|.+.|+.|++||++|+||.+|+.|
T Consensus        30 ~~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          30 WAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             CTTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             CCcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            34567899999999999999999999999999999976543 355788999999999999999999876

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1e-17  Score=118.68  Aligned_cols=66  Identities=18%  Similarity=0.280  Sum_probs=57.7

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhh
Q 028609           71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDL  140 (206)
Q Consensus        71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~  140 (206)
                      -.++|+||||+.+|+.++||+||++|+++||||+++.. .+.|.+.|+.|++||++|++   +..||..+
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~~---~~~~d~~~   80 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN-HDIANEVFKHLQNEINRLEK---QAFLDQNA   80 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC-HHHHHHHHHHHHHHHHHHHH---HTTCSSSS
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccch-hhHHHHHHHHHHHHHHHHHH---HHHhhccc
Confidence            46999999999999999999999999999999998765 46789999999999999964   55666544