Citrus Sinensis ID: 028625

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
MENNQQGQSSSYPPQPPSAAAAATATAPFHHLIQQQQQQLQMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPAGTGDDGSYGSGGSGGPANLDGQG
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHcccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccc
ccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccccccHHHHHccccEEcHHHHHHHHcccHHHHHHccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mennqqgqsssyppqppsaaaaatatapfhHLIQQQQQQLQMFWSYQRQEIEQANdfknhqlpLARIKKIMKADEDVRMISAEENKRRTLQKNDIAAAITRTDIFDFlvdivprdeikdeaaglggmvgatasgvpyyyppmgqptgtagpggmmigrpavdptgvyvqppsqawqsvwqtpagtgddgsygsggsggpanldgqg
mennqqgqsssyppqPPSAAAAATATAPFHHLIQQQQQQLQMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISaeenkrrtlqkndiaaaitrtdifDFLVDIVPRDEIKDEAAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPAGTGDDGsygsggsggpanldgqg
MENNqqgqsssyppqppsaaaaatatapFHHLIqqqqqqlqMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPAgtgddgsygsggsggPANLDGQG
****************************FHHLIQQQQQQLQMFWSYQRQEIEQANDFKNHQLPLARIKKIM********************KNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGATASGVPYYYPP*******************V*PTGVYVQ****AWQSVW***************************
******************************************FWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDV**********RTLQKNDIAAAITRTDIFDFLVDIVPR********************************************************************************************
*************************TAPFHHLIQQQQQQLQMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPAGTGDDGSYGSGGSGGPANLDGQG
************************ATAPFHHLIQQQQQQLQMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK***************GVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQ******************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MENNQQGQSSSYPPQPPSAAAAATATAPFHHLIQQQQQQLQMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPAGTGDDGSYGSGGSGGPANLDGQG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query206 2.2.26 [Sep-21-2011]
Q9SMP0234 Nuclear transcription fac yes no 0.883 0.777 0.759 1e-71
Q9FMV5250 Nuclear transcription fac no no 0.946 0.78 0.673 2e-68
Q9ZVL3217 Nuclear transcription fac no no 0.640 0.608 0.533 6e-37
Q8LCG7199 Nuclear transcription fac no no 0.485 0.502 0.595 1e-34
Q8L4B2231 Nuclear transcription fac no no 0.558 0.497 0.558 7e-34
Q13952 458 Nuclear transcription fac yes no 0.538 0.242 0.467 3e-23
Q62725 335 Nuclear transcription fac yes no 0.538 0.331 0.467 6e-23
P70353 335 Nuclear transcription fac yes no 0.538 0.331 0.467 7e-23
Q5E9X1 335 Nuclear transcription fac yes no 0.538 0.331 0.467 8e-23
Q9FGP7202 Nuclear transcription fac no no 0.611 0.623 0.414 9e-23
>sp|Q9SMP0|NFYC1_ARATH Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1 Back     alignment and function desciption
 Score =  269 bits (687), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 161/212 (75%), Positives = 167/212 (78%), Gaps = 30/212 (14%)

Query: 22  AATATAPFHHLIQQQQQQLQMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMIS 81
           AA   A +HHL+QQQQQQLQ+FW+YQRQEIEQ NDFKNHQLPLARIKKIMKADEDVRMIS
Sbjct: 26  AAGGGASYHHLLQQQQQQLQLFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMIS 85

Query: 82  -------------------------AEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDE 116
                                    AEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDE
Sbjct: 86  AEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDE 145

Query: 117 IKDEAAGLGG--MVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQA 174
           IKDEAA LGG  +V  TASGVPYYYPPMGQP   AGPGGMMIGRPA+DP GVYVQPPSQA
Sbjct: 146 IKDEAAVLGGGMVVAPTASGVPYYYPPMGQP---AGPGGMMIGRPAMDPNGVYVQPPSQA 202

Query: 175 WQSVWQTPAGTGDDGSYGSGGSGGPANLDGQG 206
           WQSVWQT  GTGDD SYGSGGS G  NLDGQG
Sbjct: 203 WQSVWQTSTGTGDDVSYGSGGSSGQGNLDGQG 234
Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FMV5|NFYC4_ARATH Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZVL3|NFYC3_ARATH Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=2 SV=1 Back     alignment and function description
>sp|Q8LCG7|NFYC2_ARATH Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=2 SV=2 Back     alignment and function description
>sp|Q8L4B2|NFYC9_ARATH Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1 Back     alignment and function description
>sp|Q13952|NFYC_HUMAN Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3 Back     alignment and function description
>sp|Q62725|NFYC_RAT Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1 Back     alignment and function description
>sp|P70353|NFYC_MOUSE Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=2 SV=2 Back     alignment and function description
>sp|Q5E9X1|NFYC_BOVIN Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC PE=2 SV=1 Back     alignment and function description
>sp|Q9FGP7|NFYC6_ARATH Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana GN=NFYC6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query206
449501458 755 PREDICTED: acetolactate synthase 3, chlo 0.941 0.256 0.721 2e-75
449440548220 PREDICTED: nuclear transcription factor 0.941 0.881 0.721 8e-75
297819472232 hypothetical protein ARALYDRAFT_485217 [ 0.868 0.771 0.754 4e-73
255540215269 ccaat-binding transcription factor, puta 0.956 0.732 0.740 6e-72
224136187238 predicted protein [Populus trichocarpa] 0.970 0.840 0.689 2e-71
15228405234 nuclear transcription factor Y subunit C 0.883 0.777 0.759 6e-70
350540630232 CONSTANS interacting protein 2a [Solanum 0.868 0.771 0.674 4e-67
388499150224 unknown [Lotus japonicus] 0.927 0.852 0.670 7e-67
15242784250 nuclear transcription factor Y subunit C 0.946 0.78 0.673 1e-66
225456369211 PREDICTED: nuclear transcription factor 0.888 0.867 0.713 6e-66
>gi|449501458|ref|XP_004161372.1| PREDICTED: acetolactate synthase 3, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 166/230 (72%), Positives = 171/230 (74%), Gaps = 36/230 (15%)

Query: 1   MENNQQGQSSSYPPQPPSAAAAATATAPFHHLIQQQQQQLQMFWSYQRQEIEQANDFKNH 60
           M+ N Q QSS Y         A     PFHHL+QQQQQQLQMFWS+QRQEIEQ NDFKNH
Sbjct: 1   MDANNQAQSSPY-----PPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNH 55

Query: 61  QLPLARIKKIMKADEDVRMIS-------------------------AEENKRRTLQKNDI 95
           QLPLARIKKIMKADEDVRMIS                         AEENKRRTLQKNDI
Sbjct: 56  QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDI 115

Query: 96  AAAITRTDIFDFLVDIVPRDEIKDEAAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMM 155
           AAAITRTDIFDFLVDIVPRDEIKDE AGLGGMVGATASGVPYYYPPMGQP G   PGGMM
Sbjct: 116 AAAITRTDIFDFLVDIVPRDEIKDE-AGLGGMVGATASGVPYYYPPMGQPAG--APGGMM 172

Query: 156 IGRPAVDPTGVYVQPPSQAWQSVWQTPAGTGDDGSYGSGGSGGPANLDGQ 205
           IGRPA+DPTGVY QPPSQAWQSVWQT A   +DGSY SG S G  NLDGQ
Sbjct: 173 IGRPAMDPTGVYAQPPSQAWQSVWQTAA---EDGSYASGASSGQGNLDGQ 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449440548|ref|XP_004138046.1| PREDICTED: nuclear transcription factor Y subunit C-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297819472|ref|XP_002877619.1| hypothetical protein ARALYDRAFT_485217 [Arabidopsis lyrata subsp. lyrata] gi|297323457|gb|EFH53878.1| hypothetical protein ARALYDRAFT_485217 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255540215|ref|XP_002511172.1| ccaat-binding transcription factor, putative [Ricinus communis] gi|223550287|gb|EEF51774.1| ccaat-binding transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224136187|ref|XP_002322264.1| predicted protein [Populus trichocarpa] gi|222869260|gb|EEF06391.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15228405|ref|NP_190428.1| nuclear transcription factor Y subunit C-1 [Arabidopsis thaliana] gi|75266105|sp|Q9SMP0.1|NFYC1_ARATH RecName: Full=Nuclear transcription factor Y subunit C-1; Short=AtNF-YC-1; AltName: Full=Transcriptional activator HAP5A gi|6523090|emb|CAB62348.1| transcription factor Hap5a [Arabidopsis thaliana] gi|20260196|gb|AAM12996.1| transcription factor Hap5a [Arabidopsis thaliana] gi|21554251|gb|AAM63326.1| transcription factor Hap5a [Arabidopsis thaliana] gi|24899757|gb|AAN65093.1| transcription factor Hap5a [Arabidopsis thaliana] gi|332644913|gb|AEE78434.1| nuclear transcription factor Y subunit C-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|350540630|ref|NP_001234244.1| CONSTANS interacting protein 2a [Solanum lycopersicum] gi|45544867|gb|AAS67369.1| CONSTANS interacting protein 2a [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|388499150|gb|AFK37641.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|15242784|ref|NP_201152.1| nuclear transcription factor Y subunit C-4 [Arabidopsis thaliana] gi|79332019|ref|NP_001032130.1| nuclear transcription factor Y subunit C-4 [Arabidopsis thaliana] gi|75262732|sp|Q9FMV5.1|NFYC4_ARATH RecName: Full=Nuclear transcription factor Y subunit C-4; Short=AtNF-YC-4 gi|9758288|dbj|BAB08812.1| transcription factor Hap5a-like protein [Arabidopsis thaliana] gi|18252935|gb|AAL62394.1| transcription factor Hap5a-like protein [Arabidopsis thaliana] gi|23198020|gb|AAN15537.1| transcription factor Hap5a-like protein [Arabidopsis thaliana] gi|222423523|dbj|BAH19731.1| AT5G63470 [Arabidopsis thaliana] gi|332010372|gb|AED97755.1| nuclear transcription factor Y subunit C-4 [Arabidopsis thaliana] gi|332010373|gb|AED97756.1| nuclear transcription factor Y subunit C-4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225456369|ref|XP_002284041.1| PREDICTED: nuclear transcription factor Y subunit C-1-like isoform 1 [Vitis vinifera] gi|359491105|ref|XP_003634221.1| PREDICTED: nuclear transcription factor Y subunit C-1-like isoform 3 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query206
TAIR|locus:2114555234 NF-YC1 ""nuclear factor Y, sub 0.601 0.529 0.751 9.8e-68
TAIR|locus:2167306250 NF-YC4 ""nuclear factor Y, sub 0.601 0.496 0.689 7.7e-64
TAIR|locus:2010980217 NF-YC3 ""nuclear factor Y, sub 0.436 0.414 0.585 1.7e-38
TAIR|locus:2036034231 NF-YC9 ""nuclear factor Y, sub 0.456 0.406 0.538 1.7e-36
TAIR|locus:2011776199 NF-YC2 ""nuclear factor Y, sub 0.291 0.301 0.655 2.1e-34
ASPGD|ASPL0000002619265 hapE [Emericella nidulans (tax 0.276 0.215 0.551 2.9e-26
CGD|CAL0002670348 HAP5 [Candida albicans (taxid: 0.189 0.112 0.743 9e-24
UNIPROTKB|Q5A1M2348 HAP5 "Putative uncharacterized 0.189 0.112 0.743 9e-24
UNIPROTKB|G4NC05270 MGG_00472 "Transcriptional act 0.276 0.211 0.559 4.1e-23
UNIPROTKB|Q5T6K5 313 NFYC "Nuclear transcription fa 0.432 0.284 0.456 8.5e-23
TAIR|locus:2114555 NF-YC1 ""nuclear factor Y, subunit C1"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 482 (174.7 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
 Identities = 97/129 (75%), Positives = 100/129 (77%)

Query:    80 ISAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAGLGG--MVGATASGVPY 137
             + AEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAA LGG  +V  TASGVPY
Sbjct:   109 LHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTASGVPY 168

Query:   138 YYPPMGQPTGTAGPGGMMIGRPAVDPTGVYVQPPSQAWQSVWQTPAXXXXXXXXXXXXXX 197
             YYPPMGQP   AGPGGMMIGRPA+DP GVYVQPPSQAWQSVWQT                
Sbjct:   169 YYPPMGQP---AGPGGMMIGRPAMDPNGVYVQPPSQAWQSVWQTSTGTGDDVSYGSGGSS 225

Query:   198 XPANLDGQG 206
                NLDGQG
Sbjct:   226 GQGNLDGQG 234
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IC;ISS;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA
GO:0016602 "CCAAT-binding factor complex" evidence=ISS
TAIR|locus:2167306 NF-YC4 ""nuclear factor Y, subunit C4"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010980 NF-YC3 ""nuclear factor Y, subunit C3"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036034 NF-YC9 ""nuclear factor Y, subunit C9"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011776 NF-YC2 ""nuclear factor Y, subunit C2"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000002619 hapE [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
CGD|CAL0002670 HAP5 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5A1M2 HAP5 "Putative uncharacterized protein HAP5" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|G4NC05 MGG_00472 "Transcriptional activator hap5" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T6K5 NFYC "Nuclear transcription factor Y subunit gamma" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SMP0NFYC1_ARATHNo assigned EC number0.75940.88340.7777yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.5__1209__AT3G48590.1
annotation not avaliable (232 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query206
COG5208286 COG5208, HAP5, CCAAT-binding factor, subunit C [Tr 2e-20
pfam0080865 pfam00808, CBFD_NFYB_HMF, Histone-like transcripti 2e-08
>gnl|CDD|227533 COG5208, HAP5, CCAAT-binding factor, subunit C [Transcription] Back     alignment and domain information 
 Score = 86.3 bits (213), Expect = 2e-20
 Identities = 50/137 (36%), Positives = 70/137 (51%), Gaps = 39/137 (28%)

Query: 32  LIQQQQQQLQMFWSYQRQEIEQAN--DFKNHQLPLARIKKIMKADEDVRMISAE------ 83
           L+    +++  +W    +  E+      K+H LPLARIKK+MK DEDV+MISAE      
Sbjct: 78  LVGLLDERISRYWQQTIKAAEEERQILLKDHNLPLARIKKVMKTDEDVKMISAEAPVLFA 137

Query: 84  -------------------ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEI------- 117
                              ENKRRTLQK+DIAAA+ ++++FDFL+DIVPR+         
Sbjct: 138 KITEIFIEELTMRAWINAEENKRRTLQKSDIAAAVKKSEMFDFLIDIVPRNPFNHLVPSK 197

Query: 118 -----KDEAAGLGGMVG 129
                +D A  +G    
Sbjct: 198 MHHGGEDFAPRMGDAYA 214

Length = 286
>gnl|CDD|201453 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor (CBF/NF-Y) and archaeal histone Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 206
KOG1657236 consensus CCAAT-binding factor, subunit C (HAP5) [ 99.96
COG5208286 HAP5 CCAAT-binding factor, subunit C [Transcriptio 99.89
KOG1659224 consensus Class 2 transcription repressor NC2, alp 99.32
COG5247113 BUR6 Class 2 transcription repressor NC2, alpha su 99.22
PF0080865 CBFD_NFYB_HMF: Histone-like transcription factor ( 99.05
KOG1658162 consensus DNA polymerase epsilon, subunit C [Repli 98.42
COG5262132 HTA1 Histone H2A [Chromatin structure and dynamics 97.55
cd00074115 H2A Histone 2A; H2A is a subunit of the nucleosome 97.42
smart00414106 H2A Histone 2A. 96.48
KOG1756131 consensus Histone 2A [Chromatin structure and dyna 96.39
KOG0869168 consensus CCAAT-binding factor, subunit A (HAP3) [ 96.05
PLN00154136 histone H2A; Provisional 95.95
PTZ00017134 histone H2A; Provisional 95.87
PLN00156139 histone H2AX; Provisional 94.51
PLN00153129 histone H2A; Provisional 94.31
PLN00157132 histone H2A; Provisional 94.09
PTZ00252134 histone H2A; Provisional 93.33
COG203691 HHT1 Histones H3 and H4 [Chromatin structure and d 92.38
PF0012575 Histone: Core histone H2A/H2B/H3/H4 histone h2a si 91.61
smart0080365 TAF TATA box binding protein associated factor. TA 90.17
cd0007685 H4 Histone H4, one of the four histones, along wit 88.7
PLN00035103 histone H4; Provisional 83.56
PTZ00015102 histone H4; Provisional 81.92
>KOG1657 consensus CCAAT-binding factor, subunit C (HAP5) [Transcription] Back     alignment and domain information 
Probab=99.96  E-value=6.6e-30  Score=222.86  Aligned_cols=156  Identities=49%  Similarity=0.686  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhhCcccchhhh-------------------------hhhcccccc
Q 028625           37 QQQLQMFWSYQRQEIEQANDFKNHQLPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQ   91 (206)
Q Consensus        37 qq~L~~FW~~q~~eiE~~~d~k~~~LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLq   91 (206)
                      .++|.+||++...|+|...+|+++.|||+|||||||+|+||+||++                         ++++||||+
T Consensus        50 ~~~l~~fw~~~~~e~e~~~d~~~~~lPlaRiKkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrtl~  129 (236)
T KOG1657|consen   50 RQQLQSFWSKQAIEKEGQLDFKNHILPLARIKKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTEENKRRTLQ  129 (236)
T ss_pred             hHHHHhhhhccccccccccchhhccCcHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccccccch
Confidence            7899999999986667788999999999999999999999999998                         589999999


Q ss_pred             HHHHHHHHhcCCcccchhhccCCccchhh--hh-ccC-CC-cCC-CCCCCCccCCCCCCCCCCCCCCceeeccCCCCCCc
Q 028625           92 KNDIAAAITRTDIFDFLVDIVPRDEIKDE--AA-GLG-GM-VGA-TASGVPYYYPPMGQPTGTAGPGGMMIGRPAVDPTG  165 (206)
Q Consensus        92 y~DIA~AV~~~d~fDFL~DIVP~~~~k~~--~~-~~~-~~-~~~-~a~~~p~y~~~~~~~~~~~~~~g~~~g~p~~~~~~  165 (206)
                      ++||+.+|.+++.||||+||||++.....  .. ... .. ... ...+++|.+...+   ...+|+|+++|.|.|+.  
T Consensus       130 ~sdia~av~~s~~fdFL~DivP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~--  204 (236)
T KOG1657|consen  130 KSDIAAAVTQSETFDFLRDIVPRKILAEKYPSLAAKGPGEMREDDFVAPVTYIMDNAG---IQQIPPGLVAGQPQCIR--  204 (236)
T ss_pred             HHHHHHHhccCCCccceeccccchhccccccccccCCCcccccccccccccccccccc---ccccCchhhcCCccccc--
Confidence            99999999999999999999999987752  11 111 11 111 2444666666655   33478889999999876  


Q ss_pred             cccCCCcccccccccCCCCCCCCCCCCCCCCCCC
Q 028625          166 VYVQPPSQAWQSVWQTPAGTGDDGSYGSGGSGGP  199 (206)
Q Consensus       166 ~~~q~p~~~~~~~~~~~~~~~~~~~~~~gg~~g~  199 (206)
                      +|. |.+++ +..|++...++++.++..|+++|+
T Consensus       205 ~~~-~~~~~-q~~~~~~~~~~~~~~~~~g~~~~~  236 (236)
T KOG1657|consen  205 LAQ-PVSGT-QGQWQTLATDAQNITGTEGQQGGQ  236 (236)
T ss_pred             ccC-CCccc-cchhhhccCCcccccccccCCCCC
Confidence            444 44444 889999999999999999998874

>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription] Back     alignment and domain information
>KOG1659 consensus Class 2 transcription repressor NC2, alpha subunit (DRAP1) [Transcription] Back     alignment and domain information
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription] Back     alignment and domain information
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin Back     alignment and domain information
>KOG1658 consensus DNA polymerase epsilon, subunit C [Replication, recombination and repair] Back     alignment and domain information
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics] Back     alignment and domain information
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome Back     alignment and domain information
>smart00414 H2A Histone 2A Back     alignment and domain information
>KOG1756 consensus Histone 2A [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription] Back     alignment and domain information
>PLN00154 histone H2A; Provisional Back     alignment and domain information
>PTZ00017 histone H2A; Provisional Back     alignment and domain information
>PLN00156 histone H2AX; Provisional Back     alignment and domain information
>PLN00153 histone H2A; Provisional Back     alignment and domain information
>PLN00157 histone H2A; Provisional Back     alignment and domain information
>PTZ00252 histone H2A; Provisional Back     alignment and domain information
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics] Back     alignment and domain information
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ] Back     alignment and domain information
>smart00803 TAF TATA box binding protein associated factor Back     alignment and domain information
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution Back     alignment and domain information
>PLN00035 histone H4; Provisional Back     alignment and domain information
>PTZ00015 histone H4; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query206
4g91_C119 Ccaat-Binding Complex From Aspergillus Nidulans Len 2e-18
4awl_C94 The Nf-y Transcription Factor Is Structurally And F 6e-17
1n1j_B97 Crystal Structure Of The Nf-YbNF-Yc Histone Pair Le 6e-17
>pdb|4G91|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans Length = 119 Back     alignment and structure 
Iteration: 1

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 26/98 (26%)
Query: 43  FWSYQRQEIEQAN-DFKNHQLPLARIKKIMKADEDVRMISAE------------------ 83
           +W +    +E  N D+K HQLPLARIKK+MKAD +V+MISAE                  
Sbjct: 22  YWQHVINHLESDNHDYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTM 81
Query: 84  -------ENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 114
                  +NKRRTLQ++DIAAA++++D+FDFL+DIVPR
Sbjct: 82  RAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLIDIVPR 119
>pdb|4AWL|C Chain C, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 94 Back     alignment and structure
>pdb|1N1J|B Chain B, Crystal Structure Of The Nf-YbNF-Yc Histone Pair Length = 97 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query206
1n1j_B97 NF-YC; histone-like PAIR, DNA binding protein; 1.6 2e-26
2byk_A140 Chrac-16; nucleosome sliding, histone fold, DNA-bi 3e-20
1jfi_A98 Transcription regulator NC2 alpha chain; histone, 3e-19
1n1j_A93 NF-YB; histone-like PAIR, DNA binding protein; 1.6 1e-06
2byk_B128 Chrac-14; nucleosome sliding, histone fold, DNA-bi 2e-06
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Length = 97 Back     alignment and structure
 Score = 96.6 bits (240), Expect = 2e-26
 Identities = 48/95 (50%), Positives = 56/95 (58%), Gaps = 27/95 (28%)

Query: 47  QRQEIEQAN--DFKNHQLPLARIKKIMKADEDVRMISAE--------------------- 83
             +EI      DF+  +LPLARIKKIMK DEDV+MISAE                     
Sbjct: 3   HMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAW 62

Query: 84  ----ENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 114
               +NKRRTLQ+NDIA AIT+ D FDFL+DIVPR
Sbjct: 63  IHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR 97
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A Length = 140 Back     alignment and structure
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Length = 98 Back     alignment and structure
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Length = 93 Back     alignment and structure
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B Length = 128 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query206
4g92_C119 HAPE; transcription factor, nucleosome, minor groo 99.93
1n1j_B97 NF-YC; histone-like PAIR, DNA binding protein; 1.6 99.81
1jfi_A98 Transcription regulator NC2 alpha chain; histone, 99.69
2byk_A140 Chrac-16; nucleosome sliding, histone fold, DNA-bi 99.66
2byk_B128 Chrac-14; nucleosome sliding, histone fold, DNA-bi 99.15
1n1j_A93 NF-YB; histone-like PAIR, DNA binding protein; 1.6 99.09
1b67_A68 Protein (histone HMFA); DNA binding protein; 1.48A 98.17
3b0c_W76 CENP-W, centromere protein W; histone fold, DNA bi 98.16
1id3_C131 Histone H2A.1; nucleosome core particle, chromatin 98.05
1jfi_B179 DR1 protein, transcription regulator NC2 beta chai 98.04
2nqb_C123 Histone H2A; nucleosome, NCP, chromatin, structura 98.01
1tzy_A129 Histone H2A-IV; histone-fold, tetramer-dimer-dimer 97.97
2f8n_G120 Core histone macro-H2A.1; nucleosome, NCP, macroh2 97.96
1f66_C128 Histone H2A.Z; nucleosome, chromatin, histone vari 97.87
2f8n_K149 Histone H2A type 1; nucleosome, NCP, macroh2A, his 97.85
2jss_A192 Chimera of histone H2B.1 and histone H2A.Z; histon 97.55
1ku5_A70 HPHA, archaeal histon; histone fold, DNA binding p 96.99
1f1e_A154 Histone fold protein; archaeal histone protein, DN 96.84
3b0c_T111 CENP-T, centromere protein T; histone fold, DNA bi 96.81
1tzy_D103 Histone H4-VI; histone-fold, tetramer-dimer-dimer, 96.21
2yfw_B103 Histone H4, H4; cell cycle, kinetochore, centromer 96.07
2hue_C84 Histone H4; mini beta sheet, elongated beta sandwh 95.75
1f1e_A154 Histone fold protein; archaeal histone protein, DN 95.61
1id3_B102 Histone H4; nucleosome core particle, chromatin, p 95.27
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C* Back     alignment and structure
Probab=99.93  E-value=1.2e-26  Score=181.98  Aligned_cols=82  Identities=57%  Similarity=0.938  Sum_probs=75.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhh-cccCCCCCCHHHHHHHHhhCcccchhhh-------------------------hhhc
Q 028625           33 IQQQQQQLQMFWSYQRQEIEQA-NDFKNHQLPLARIKKIMKADEDVRMISA-------------------------EENK   86 (206)
Q Consensus        33 ~~~~qq~L~~FW~~q~~eiE~~-~d~k~~~LPLARIKKIMKsDpDV~mISa-------------------------e~~k   86 (206)
                      ..+.++.|.+||.+++++||.. .|+|++.||+||||||||+||++.+||+                         ..+|
T Consensus        12 ~~~~~~~l~~fw~~~~~~~e~~~~d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~k   91 (119)
T 4g92_C           12 QGTARDILTTYWQHVINHLESDNHDYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNK   91 (119)
T ss_dssp             CTHHHHHHHHHHHHHHHHHTCSCCCSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3477899999999999999975 5999999999999999999999999987                         3689


Q ss_pred             cccccHHHHHHHHhcCCcccchhhccCC
Q 028625           87 RRTLQKNDIAAAITRTDIFDFLVDIVPR  114 (206)
Q Consensus        87 RkTLqy~DIA~AV~~~d~fDFL~DIVP~  114 (206)
                      ||||+++||+.||++++.||||.|||||
T Consensus        92 rktI~~~di~~Av~~~e~~dFL~DiVPk  119 (119)
T 4g92_C           92 RRTLQRSDIAAALSKSDMFDFLIDIVPR  119 (119)
T ss_dssp             CSEECHHHHHHHHTTCGGGGGGTTTCC-
T ss_pred             cCccCHHHHHHHHhcCchhhHHHHhCCC
Confidence            9999999999999999999999999996
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A Back     alignment and structure
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B Back     alignment and structure
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A Back     alignment and structure
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W Back     alignment and structure
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Back     alignment and structure
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C* Back     alignment and structure
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ... Back     alignment and structure
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C Back     alignment and structure
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1 Back     alignment and structure
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1 Back     alignment and structure
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 Back     alignment and structure
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2 Back     alignment and structure
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2 Back     alignment and structure
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T Back     alignment and structure
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ... Back     alignment and structure
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140} Back     alignment and structure
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B Back     alignment and structure
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2 Back     alignment and structure
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 206
d1n1jb_78 a.22.1.3 (B:) Nuclear transcription factor Y subun 2e-18
d2byka172 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophil 9e-14
d1n1ja_87 a.22.1.3 (A:) Nuclear transcription factor Y subun 1e-13
d2bykb189 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila 3e-12
d1jfia_66 a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chai 1e-10
d1jfib_135 a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain 3e-10
d1ku5a_66 a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococc 9e-09
d1htaa_68 a.22.1.2 (A:) Archaeal histone {Archaeon Methanoth 6e-08
d1f1ea_151 a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy 7e-08
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]} Length = 78 Back     information, alignment and structure

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (182), Expect = 2e-18
 Identities = 44/78 (56%), Positives = 49/78 (62%), Gaps = 25/78 (32%)

Query: 62  LPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIA 96
           LPLARIKKIMK DEDV+MISA                         E+NKRRTLQ+NDIA
Sbjct: 1   LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIA 60

Query: 97  AAITRTDIFDFLVDIVPR 114
            AIT+ D FDFL+DIVPR
Sbjct: 61  MAITKFDQFDFLIDIVPR 78
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 72 Back     information, alignment and structure
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 89 Back     information, alignment and structure
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 135 Back     information, alignment and structure
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]} Length = 66 Back     information, alignment and structure
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} Length = 68 Back     information, alignment and structure
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query206
d1n1jb_78 Nuclear transcription factor Y subunit gamma (Nf-Y 99.75
d2byka172 Chrac-16 {Fruit fly (Drosophila melanogaster) [Tax 99.46
d1n1ja_87 Nuclear transcription factor Y subunit beta (Nf-Yb 99.32
d1jfia_66 Negative cofactor 2, NC2, alpha chain {Human (Homo 99.29
d1jfib_135 Negative cofactor 2, NC2, beta chain {Human (Homo 99.2
d2bykb189 Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax 98.94
d1ku5a_66 Archaeal histone {Archaeon (Pyrococcus horikoshii) 98.74
d1htaa_68 Archaeal histone {Archaeon Methanothermus fervidus 98.54
d1f1ea_151 Archaeal histone {Archaeon Methanopyrus kandleri [ 98.08
d1q9ca_172 Histone domain of Son of sevenless protein {Human 96.6
d1u35c1106 macro-H2A.1, histone domain {Human (Homo sapiens) 95.84
d1f66c_103 Histone H2A {Human (Homo sapiens), variant H2A.Z [ 95.6
d1tzya_106 Histone H2A {Chicken (Gallus gallus), erythrocytes 95.26
d1f1ea_151 Archaeal histone {Archaeon Methanopyrus kandleri [ 95.11
d2huec182 Histone H4 {African clawed frog (Xenopus laevis) [ 89.75
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.2e-19  Score=128.39  Aligned_cols=53  Identities=83%  Similarity=1.172  Sum_probs=50.6

Q ss_pred             CCHHHHHHHHhhCcccchhhh-------------------------hhhccccccHHHHHHHHhcCCcccchhhccCC
Q 028625           62 LPLARIKKIMKADEDVRMISA-------------------------EENKRRTLQKNDIAAAITRTDIFDFLVDIVPR  114 (206)
Q Consensus        62 LPLARIKKIMKsDpDV~mISa-------------------------e~~kRkTLqy~DIA~AV~~~d~fDFL~DIVP~  114 (206)
                      ||+||||||||+|+|+.+||+                         .++|||||+|+||+.||++.+.|+||.|+||+
T Consensus         1 LP~srVkrImK~~~~~~~is~ea~~~i~~a~E~Fi~~l~~~A~~~a~~~~rkti~~~dl~~av~~~~~~~FL~d~vPk   78 (78)
T d1n1jb_           1 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR   78 (78)
T ss_dssp             CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGTTTSCC
T ss_pred             CCHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHhcCChhHHHHHhCCC
Confidence            899999999999999999987                         37899999999999999999999999999996
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]} Back     information, alignment and structure
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} Back     information, alignment and structure
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]} Back     information, alignment and structure
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Back     information, alignment and structure
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure