Citrus Sinensis ID: 028638

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MLKMTKTLCTRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGLNFRTAYHNAVGASMSK
Secondary Structure (PSIPRED)
ccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccEEEcccccccccEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccEEEEEcccEEEEcccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccEEcccccccccccccccccHHHHHHHHHccccEEEEEEcccccccccEEcccccccccccccc
Coil and Loop (DISEMBL)
mlkmtktlctrssggdlrycqkcshykpprahhcrvckrcvlrmdhhciwisncvghanyKVFFIFVLYAVVACIYSMVLLVGsltndsledelqtggsfRTAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAekggtvykhpydlgifenltsvlgpnifswvcpssrhigsglnfRTAYHNAVGASMSK
Flexible Loop (DISEMBL)
mlkmtktlctrssggdlrycqkcshykpprahhCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGLNFRTAYHNAVGASMSK
Low Complexity Region (SEG)
MLKMTKTLCTRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVIsglllvplsvalsvllGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGLNFRTAYHNAVGASMSK
Disordered region (IsUnstruct)
**************GDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGLNFRTAYHNA*******
Disordered Region (DISOPRED)
**KMTKT***RSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGLNFRT************
Disordered Region (DISEMBL)
MLKMTKTLCTRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGLNFRTAYHN********
Disordered Region (DISPRO)
MLKMTKTLCTRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGLNFRTA***********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKMTKTLCTRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGLNFRTAYHNAVGASMSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
Q93VV0	286	Probable S-acyltransferas	yes	no	0.951	0.685	0.734	2e-83
Q500Z2	254	Probable S-acyltransferas	no	no	0.893	0.724	0.513	7e-51
Q4PE27	604	Palmitoyltransferase PFA4	N/A	no	0.868	0.296	0.362	4e-30
P0CS69	459	Palmitoyltransferase PFA4	N/A	no	0.805	0.361	0.385	8e-29
Q9UIJ5	367	Palmitoyltransferase ZDHH	yes	no	0.859	0.482	0.341	8e-27
P59267	366	Palmitoyltransferase ZDHH	yes	no	0.839	0.472	0.343	3e-26
Q8BGJ0	337	Palmitoyltransferase ZDHH	no	no	0.883	0.540	0.367	4e-26
Q2TGJ4	337	Palmitoyltransferase ZDHH	yes	no	0.883	0.540	0.367	4e-26
Q9JKR5	366	Palmitoyltransferase ZDHH	no	no	0.839	0.472	0.343	4e-26
Q96MV8	337	Palmitoyltransferase ZDHH	no	no	0.883	0.540	0.362	2e-25

>sp|Q93VV0|ZDHC6_ARATH Probable S-acyltransferase At3g09320 OS=Arabidopsis thaliana GN=At3g09320 PE=2 SV=1

 Score =  308 bits (788), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 144/196 (73%), Positives = 168/196 (85%)

Query: 11  RSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYA 70
           +  GGDLRYCQKCSH+KPPRAHHCRVCKRCVLRMDHHCIWI+NCVGH NYKVFF+FV+YA
Sbjct: 90  KRKGGDLRYCQKCSHFKPPRAHHCRVCKRCVLRMDHHCIWINNCVGHTNYKVFFVFVVYA 149

Query: 71  VVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIF 130
           V AC+YS+VLLVGSLT +  ++E + G   RT YVIS  LL+PLS+AL VLLGWHIYLI 
Sbjct: 150 VTACVYSLVLLVGSLTVEPQDEEEEMGSYLRTIYVISAFLLIPLSIALGVLLGWHIYLIL 209

Query: 131 HNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGL 190
            NKTTIEYHEGVRA+WLAEKGG VYKHPYD+G +ENLT +LGPNI SW+CP+SRHIGSG+
Sbjct: 210 QNKTTIEYHEGVRAMWLAEKGGQVYKHPYDIGAYENLTLILGPNILSWLCPTSRHIGSGV 269

Query: 191 NFRTAYHNAVGASMSK 206
            FRTA+ +   +S +K
Sbjct: 270 RFRTAFDSIPDSSETK 285

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -

>sp|Q500Z2|ZDH20_ARATH Probable S-acyltransferase At5g04270 OS=Arabidopsis thaliana GN=At5g04270 PE=2 SV=1

 Score =  200 bits (508), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 126/187 (67%), Gaps = 3/187 (1%)

Query: 10  TRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLY 69
           + S+  + R C KC  YKP R HHCRVC+RCVL+MDHHC+WI+NCVG+ANYK FFI V Y
Sbjct: 67  SNSNVTETRKCDKCFAYKPLRTHHCRVCRRCVLKMDHHCLWINNCVGYANYKAFFILVFY 126

Query: 70  AVVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLI 129
           A VA IYS VLLV     +   D        +T  V  G+ ++ LS+ L  LL WHIYLI
Sbjct: 127 ATVASIYSTVLLVCCAFKNG--DSYAGNVPLKTFIVSCGIFMIGLSITLGTLLCWHIYLI 184

Query: 130 FHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPS-SRHIGS 188
            HN TTIE+++  RA WLA K G  Y+H +D+G ++NLTSVLGPN+  W+CP+ +R+   
Sbjct: 185 THNMTTIEHYDSKRASWLARKSGQSYRHQFDVGFYKNLTSVLGPNMIKWLCPTFTRNPED 244

Query: 189 GLNFRTA 195
           G++F  +
Sbjct: 245 GISFSAS 251

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q4PE27|PFA4_USTMA Palmitoyltransferase PFA4 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PFA4 PE=3 SV=1

 Score =  131 bits (329), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 108/196 (55%), Gaps = 17/196 (8%)

Query: 18  RYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYS 77
           RYC+ CS +KPPR+HHC+ C+RCVLRMDHHC W++NCVGH N+  F  F+ Y  V C+Y 
Sbjct: 181 RYCKTCSAFKPPRSHHCKTCQRCVLRMDHHCPWLANCVGHFNHAHFIRFLFYVDVTCLYH 240

Query: 78  MVLLVGSLTNDSLEDELQTGGSFRTA-------YVISGLLLVPLSVALSVLLGWHIYLIF 130
           ++++   +      D   +   +R          V++  L +P+ + + +   +H Y + 
Sbjct: 241 LIMISCRVL-----DSFNSYTYWREPCARELVWLVVNYALCIPVILLVGIFSLYHFYCLA 295

Query: 131 HNKTTIEYHEGVRALWLAEKGGT-VYKHPYDLGIFENLTSVLGPNIFSWVCP--SSRHIG 187
            N+TTIE  E  R   +  +G     K+PYDLG++ N+  VLG +   W  P   +R  G
Sbjct: 296 VNQTTIESWEKDRTATMIRRGRVRKVKYPYDLGLWRNVRQVLGASPLVWCLPGAGARMAG 355

Query: 188 SGLNFRTAYHNAVGAS 203
            GL +  A  N +G S
Sbjct: 356 DGLKYPVA--NGLGKS 369

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P0CS69|PFA4_CRYNB Palmitoyltransferase PFA4 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PFA4 PE=3 SV=1

 Score =  126 bits (317), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/184 (38%), Positives = 101/184 (54%), Gaps = 18/184 (9%)

Query: 18  RYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYS 77
           RYC+ C HYKPPRAHHCR CK C L++DHHC WI NCVG  N   F  F+L+  +   + 
Sbjct: 95  RYCKNCEHYKPPRAHHCRQCKTCWLKLDHHCPWIGNCVGFYNQGHFIRFLLWVDIGTTFH 154

Query: 78  MVLLVGSL--------TNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLI 129
           ++++V  +           +L D L    +F T         VP+ + + +   +H+YL 
Sbjct: 155 LIIMVRRVLYIAEYYHQEPTLADVLFLVFNFATC--------VPVWLCVGMFSIYHVYLA 206

Query: 130 FHNKTTIEYHEGVRALWLAEKGG-TVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGS 188
             N TTIE  E  +   L  +G     K+PY++GI++N+ SVLGPN F W+ P     G 
Sbjct: 207 CGNSTTIEGWEKDKVATLIRRGKIKEVKYPYNIGIYKNIKSVLGPNPFLWLWPQKMQ-GD 265

Query: 189 GLNF 192
           GL+F
Sbjct: 266 GLSF 269

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q9UIJ5|ZDHC2_HUMAN Palmitoyltransferase ZDHHC2 OS=Homo sapiens GN=ZDHHC2 PE=2 SV=1

 Score =  120 bits (300), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 100/193 (51%), Gaps = 16/193 (8%)

Query: 10  TRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLY 69
           TR+  G +RYC +C   KP R HHC VC +C+L+MDHHC W++NCVG +NYK F +F+ Y
Sbjct: 119 TRTMSGAIRYCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAY 178

Query: 70  AVVACIY----SMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWH 125
           +++ C++     +   +   TN  L D   T   F   ++     +   SV+LS L G+H
Sbjct: 179 SLLYCLFIAATDLQYFIKFWTN-GLPD---TQAKFHIMFLFFAAAM--FSVSLSSLFGYH 232

Query: 126 IYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRH 185
            +L+  NK+T+E           +K G      + LG  +N+  V G     W+ P    
Sbjct: 233 CWLVSKNKSTLEAFRSPVFRHGTDKNG------FSLGFSKNMRQVFGDEKKYWLLPIFSS 286

Query: 186 IGSGLNFRTAYHN 198
           +G G +F T   N
Sbjct: 287 LGDGCSFPTCLVN 299

Palmitoyltransferase specific for GAP43 and DLG4/PSD95.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P59267|ZDHC2_MOUSE Palmitoyltransferase ZDHHC2 OS=Mus musculus GN=Zdhhc2 PE=2 SV=1

 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 16/189 (8%)

Query: 10  TRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLY 69
           TR+  G +RYC +C   KP R HHC VC +C+L+MDHHC W++NCVG +NYK F +F+ Y
Sbjct: 118 TRTMSGAIRYCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAY 177

Query: 70  AVVACIY----SMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWH 125
           +++ C++     +   +   TN  L D   T   F   ++     +   SV+LS L G+H
Sbjct: 178 SLLYCLFIAATDLQYFIRFWTN-GLPD---TQAKFHIMFLFFAAAM--FSVSLSSLFGYH 231

Query: 126 IYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRH 185
            +L+  NK+T+E           +K G      + LG  +N+  V G     W+ P    
Sbjct: 232 CWLVSKNKSTLEAFRNPVFRHGTDKNG------FSLGFSKNMRQVFGDEKKYWLLPVFSS 285

Query: 186 IGSGLNFRT 194
            G G +F T
Sbjct: 286 QGDGCSFPT 294

Palmitoyltransferase specific for GAP43 and DLG4/PSD95.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q8BGJ0|ZDH15_MOUSE Palmitoyltransferase ZDHHC15 OS=Mus musculus GN=Zdhhc15 PE=1 SV=1

 Score =  118 bits (295), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 103/196 (52%), Gaps = 14/196 (7%)

Query: 1   MLKMTKTLC--TRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHA 58
           ++ M K L   TR+  G +R+C +C   KP R HHC VC  CVL+MDHHC W++NC+G +
Sbjct: 110 LVDMAKKLPVYTRTGSGAVRFCDRCHLIKPDRCHHCSVCAMCVLKMDHHCPWVNNCIGFS 169

Query: 59  NYKVFFIFVLYAVVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVP--LSV 116
           NYK F  F+ Y+V+ C+Y +   V S        EL    S R+ + +  LL V     V
Sbjct: 170 NYKFFLQFLAYSVLYCLY-IATTVFSYFIKYWRGELP---SVRSKFHVLFLLFVACMFFV 225

Query: 117 ALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIF 176
           +L +L G+H +L+  NKTT+E           EK G      ++LG  +N+  V G N  
Sbjct: 226 SLVILFGYHCWLVSRNKTTLEAFCTPVFTSGPEKNG------FNLGFIKNIQQVFGDNKK 279

Query: 177 SWVCPSSRHIGSGLNF 192
            W+ P     G G +F
Sbjct: 280 FWLIPIGSSPGDGHSF 295

Palmitoyltransferase specific for GAP43 and DLG4/PSD95.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q2TGJ4|ZDH15_RAT Palmitoyltransferase ZDHHC15 OS=Rattus norvegicus GN=Zdhhc15 PE=2 SV=1

 Score =  117 bits (294), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 103/196 (52%), Gaps = 14/196 (7%)

Query: 1   MLKMTKTLC--TRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHA 58
           ++ M K L   TR+  G +R+C +C   KP R HHC VC  CVL+MDHHC W++NC+G +
Sbjct: 110 LVDMAKKLPVYTRTGNGAVRFCDRCHLIKPDRCHHCSVCAMCVLKMDHHCPWVNNCIGFS 169

Query: 59  NYKVFFIFVLYAVVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVP--LSV 116
           NYK F  F+ Y+V+ C+Y +   V S        EL    S R+ + +  LL V     V
Sbjct: 170 NYKFFLQFLAYSVLYCLY-IATTVFSYFIKYWRGELP---SVRSKFHVLFLLFVACMFFV 225

Query: 117 ALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIF 176
           +L +L G+H +L+  NKTT+E           EK G      ++LG  +N+  V G N  
Sbjct: 226 SLVILFGYHCWLVSRNKTTLEAFCTPVFTSGPEKNG------FNLGFIKNIQQVFGDNKK 279

Query: 177 SWVCPSSRHIGSGLNF 192
            W+ P     G G +F
Sbjct: 280 FWLIPIGSSPGDGHSF 295

Palmitoyltransferase specific for GAP43 and DLG4/PSD95.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q9JKR5|ZDHC2_RAT Palmitoyltransferase ZDHHC2 OS=Rattus norvegicus GN=Zdhhc2 PE=2 SV=1

 Score =  117 bits (294), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 16/189 (8%)

Query: 10  TRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLY 69
           TR+  G +RYC +C   KP R HHC VC +C+L+MDHHC W++NCVG +NYK F +F+ Y
Sbjct: 118 TRTMSGAIRYCDRCRLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAY 177

Query: 70  AVVACIY----SMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWH 125
           +++ C++     +   +   TN  L D   T   F   ++     +   SV+LS L G+H
Sbjct: 178 SLLYCLFIAATDLQYFIRFWTN-GLPD---TQAKFHIMFLFFAAAM--FSVSLSSLFGYH 231

Query: 126 IYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRH 185
            +L+  NK+T+E           +K G      + LG  +N+  V G     W+ P    
Sbjct: 232 CWLVSKNKSTLEAFRNPVFRHGTDKNG------FSLGFSKNMRQVFGDEKKYWLLPIFSS 285

Query: 186 IGSGLNFRT 194
            G G +F T
Sbjct: 286 QGDGCSFPT 294

Palmitoyltransferase specific for GAP43 and DLG4/PSD95.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q96MV8|ZDH15_HUMAN Palmitoyltransferase ZDHHC15 OS=Homo sapiens GN=ZDHHC15 PE=2 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 102/196 (52%), Gaps = 14/196 (7%)

Query: 1   MLKMTKTLC--TRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHA 58
           ++ M K L   TR+  G +R+C +C   KP R HHC VC  CVL+MDHHC W++NC+G +
Sbjct: 110 LVDMAKKLPVYTRTGSGAVRFCDRCHLIKPDRCHHCSVCAMCVLKMDHHCPWVNNCIGFS 169

Query: 59  NYKVFFIFVLYAVVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVP--LSV 116
           NYK F  F+ Y+V+ C+Y +   V S        EL    S R+ + +  LL V     V
Sbjct: 170 NYKFFLQFLAYSVLYCLY-IATTVFSYFIKYWRGELP---SVRSKFHVLFLLFVACMFFV 225

Query: 117 ALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIF 176
           +L +L G+H +L+  NKTT+E           EK G      ++LG  +N+  V G    
Sbjct: 226 SLVILFGYHCWLVSRNKTTLEAFCTPVFTSGPEKNG------FNLGFIKNIQQVFGDKKK 279

Query: 177 SWVCPSSRHIGSGLNF 192
            W+ P     G G +F
Sbjct: 280 FWLIPIGSSPGDGHSF 295

Palmitoyltransferase specific for GAP43 and DLG4/PSD95.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
356504262	292	PREDICTED: probable S-acyltransferase At	0.951	0.671	0.802	1e-90
255581514	284	zinc finger protein, putative [Ricinus c	0.951	0.690	0.765	5e-90
356494828	293	PREDICTED: probable S-acyltransferase At	0.951	0.668	0.791	8e-90
224090729	283	predicted protein [Populus trichocarpa]	0.941	0.685	0.804	2e-87
359481768	274	PREDICTED: probable S-acyltransferase At	0.883	0.664	0.818	2e-85
449440325	282	PREDICTED: probable S-acyltransferase At	0.941	0.687	0.788	6e-85
224140283	282	predicted protein [Populus trichocarpa]	0.941	0.687	0.788	3e-83
297833690	286	zinc finger family protein [Arabidopsis	0.951	0.685	0.734	7e-82
18398471	286	putative S-acyltransferase [Arabidopsis	0.951	0.685	0.734	1e-81
6478924	287	unknown protein [Arabidopsis thaliana]	0.951	0.682	0.730	3e-80

>gi|356504262|ref|XP_003520916.1| PREDICTED: probable S-acyltransferase At3g09320-like [Glycine max]

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 158/197 (80%), Positives = 175/197 (88%), Gaps = 1/197 (0%)

Query: 11  RSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYA 70
           +  GGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWI+NCVGHANYKVFFIFVLYA
Sbjct: 96  KRKGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWINNCVGHANYKVFFIFVLYA 155

Query: 71  VVACIYSMVLLVGSLTNDSLEDELQTG-GSFRTAYVISGLLLVPLSVALSVLLGWHIYLI 129
           V+ACIYS+VLLVGSL +DS++DE + G  SFRT YV+SGLLLVPLS+AL VLLGWHIYLI
Sbjct: 156 VIACIYSLVLLVGSLASDSIQDEEKNGRSSFRTVYVVSGLLLVPLSIALCVLLGWHIYLI 215

Query: 130 FHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSG 189
            HNKTTIEYHEGVRALWLAEKGG++YKHPYDLG +ENLT VLGPNI SW+ P++ HIGSG
Sbjct: 216 LHNKTTIEYHEGVRALWLAEKGGSIYKHPYDLGPYENLTFVLGPNILSWLWPTANHIGSG 275

Query: 190 LNFRTAYHNAVGASMSK 206
           L +RT Y    GAS SK
Sbjct: 276 LRYRTIYDLPKGASTSK 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581514|ref|XP_002531563.1| zinc finger protein, putative [Ricinus communis] gi|223528824|gb|EEF30829.1| zinc finger protein, putative [Ricinus communis]

 Score =  335 bits (860), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 150/196 (76%), Positives = 173/196 (88%)

Query: 11  RSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYA 70
           +  GGDLR+CQKCSH+KPPRAHHCRVCKRCVLRMDHHCIWI+NCVGHANYKVFF+FV+YA
Sbjct: 89  KRKGGDLRFCQKCSHFKPPRAHHCRVCKRCVLRMDHHCIWINNCVGHANYKVFFVFVIYA 148

Query: 71  VVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIF 130
           V++CIYS+VLL+GSLT D  +DE Q+ GSFR+ YVISG+LL+PLSVAL +LLGWH+YLI 
Sbjct: 149 VISCIYSLVLLIGSLTIDPQKDEQQSSGSFRSIYVISGVLLIPLSVALGILLGWHVYLIL 208

Query: 131 HNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGL 190
            NKTTIEYHEGVRA+WLAEKGG VYKHPYD+G +ENLT VLGP+IF W CP+S H+GSGL
Sbjct: 209 QNKTTIEYHEGVRAMWLAEKGGDVYKHPYDIGAYENLTMVLGPSIFCWACPTSGHVGSGL 268

Query: 191 NFRTAYHNAVGASMSK 206
            FRTAY N   AS SK
Sbjct: 269 RFRTAYDNPTVASTSK 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356494828|ref|XP_003516285.1| PREDICTED: probable S-acyltransferase At3g09320-like [Glycine max]

 Score =  335 bits (858), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 156/197 (79%), Positives = 174/197 (88%), Gaps = 1/197 (0%)

Query: 11  RSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYA 70
           +  GGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWI+NCVGHANYKVFFIFVLYA
Sbjct: 97  KRKGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWINNCVGHANYKVFFIFVLYA 156

Query: 71  VVACIYSMVLLVGSLTNDSLEDELQTG-GSFRTAYVISGLLLVPLSVALSVLLGWHIYLI 129
           V+ACIYS+VLLVGSL +D ++DE +    SFRT YV+SGLLLVPLS+AL VLLGWHIYL+
Sbjct: 157 VIACIYSLVLLVGSLASDGVQDEEKNRRSSFRTVYVVSGLLLVPLSIALCVLLGWHIYLM 216

Query: 130 FHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSG 189
            HNKTTIEYHEGVRALWLAEKGG++YKHPYDLG +ENLTSVLGPNI SW+ P++ HIGSG
Sbjct: 217 LHNKTTIEYHEGVRALWLAEKGGSIYKHPYDLGPYENLTSVLGPNILSWLWPTANHIGSG 276

Query: 190 LNFRTAYHNAVGASMSK 206
           L +RT Y    GAS SK
Sbjct: 277 LRYRTIYDLPKGASTSK 293

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090729|ref|XP_002309068.1| predicted protein [Populus trichocarpa] gi|222855044|gb|EEE92591.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 156/194 (80%), Positives = 175/194 (90%)

Query: 11  RSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYA 70
           +  GGDLR+CQKCSH+KPPRAHHCRVC+RCVLRMDHHCIWISNCVGHANYKVFF+FV+YA
Sbjct: 89  KRKGGDLRFCQKCSHFKPPRAHHCRVCRRCVLRMDHHCIWISNCVGHANYKVFFVFVVYA 148

Query: 71  VVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIF 130
           V+ACIYS+VLLVGSLT D  +DELQ+G SFRT YVISGLLLVPLS AL VLLGWH+YLI 
Sbjct: 149 VIACIYSLVLLVGSLTVDPQKDELQSGDSFRTIYVISGLLLVPLSAALGVLLGWHVYLIL 208

Query: 131 HNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGL 190
            NKTTIEYHEGVRA+WLAEKGG VYKHPYD+G +ENLT+VLGP+IF WVCP+S HIGSGL
Sbjct: 209 QNKTTIEYHEGVRAMWLAEKGGHVYKHPYDVGAYENLTTVLGPSIFCWVCPTSGHIGSGL 268

Query: 191 NFRTAYHNAVGASM 204
            FRTAY +  GAS+
Sbjct: 269 RFRTAYDSMTGASV 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481768|ref|XP_002270930.2| PREDICTED: probable S-acyltransferase At3g09320-like [Vitis vinifera] gi|297740351|emb|CBI30533.3| unnamed protein product [Vitis vinifera]

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 149/182 (81%), Positives = 165/182 (90%)

Query: 11  RSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYA 70
           +  GGDLRYCQKC+HYKP RAHHCRVC+RCVLRMDHHCIWI+NCVGHANYK FFIFVLYA
Sbjct: 89  KRKGGDLRYCQKCAHYKPARAHHCRVCRRCVLRMDHHCIWINNCVGHANYKAFFIFVLYA 148

Query: 71  VVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIF 130
           V+ CIYS+VLLVGS+ ND+ +DE Q+GGSFR AYVISGLLLVPLSVAL VLLGWHIYLI 
Sbjct: 149 VLGCIYSLVLLVGSIYNDAEKDEEQSGGSFRNAYVISGLLLVPLSVALMVLLGWHIYLIL 208

Query: 131 HNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGL 190
            NKTTIEYHEGVRAL+LAEKGG V K+ YDLG +ENLTSVLGP+IFSWVCP+S+HIGSGL
Sbjct: 209 QNKTTIEYHEGVRALYLAEKGGNVSKNFYDLGAYENLTSVLGPSIFSWVCPTSKHIGSGL 268

Query: 191 NF 192
            F
Sbjct: 269 RF 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440325|ref|XP_004137935.1| PREDICTED: probable S-acyltransferase At3g09320-like [Cucumis sativus] gi|449483661|ref|XP_004156652.1| PREDICTED: probable S-acyltransferase At3g09320-like [Cucumis sativus]

 Score =  318 bits (816), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 153/194 (78%), Positives = 173/194 (89%)

Query: 11  RSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYA 70
           +  GGDLRYCQKCS YKPPRAHHCRVCKRC+LRMDHHCIWI+NCVGH NYKVFF+FV+YA
Sbjct: 89  KRKGGDLRYCQKCSQYKPPRAHHCRVCKRCILRMDHHCIWINNCVGHENYKVFFVFVVYA 148

Query: 71  VVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIF 130
           VVACIYS++LL+GSLT +  +DE Q GG FRT YV++GLLL PLS+ALSVLLGWHIYLI 
Sbjct: 149 VVACIYSLILLIGSLTIEPPKDEQQVGGPFRTVYVVAGLLLFPLSMALSVLLGWHIYLIL 208

Query: 131 HNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGL 190
           HNKTTIEYHEGVRA+WLAEKGG VY HPYDLG FENLT++LGPNIFSW+CP+SRH GSGL
Sbjct: 209 HNKTTIEYHEGVRAMWLAEKGGNVYSHPYDLGAFENLTTILGPNIFSWICPTSRHKGSGL 268

Query: 191 NFRTAYHNAVGASM 204
            FRTAY  ++ ASM
Sbjct: 269 RFRTAYDKSITASM 282

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140283|ref|XP_002323512.1| predicted protein [Populus trichocarpa] gi|222868142|gb|EEF05273.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 153/194 (78%), Positives = 168/194 (86%)

Query: 11  RSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYA 70
           +  GGDLRYCQKCSH+KPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFF+FV+YA
Sbjct: 89  KRKGGDLRYCQKCSHFKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFVFVVYA 148

Query: 71  VVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIF 130
           V+ACIYS+VLLVGSLT D  + EL  G SFRT YVISGLLLVPLSVAL VLLGWH+YLI 
Sbjct: 149 VIACIYSLVLLVGSLTVDPQKHELNNGDSFRTIYVISGLLLVPLSVALGVLLGWHVYLIL 208

Query: 131 HNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGL 190
            NKTTIE+HEGVRA+WLAEK G VYKHPYD+G +ENLT VLGP+I  WVCP+S HIGSGL
Sbjct: 209 QNKTTIEFHEGVRAMWLAEKEGHVYKHPYDVGTYENLTMVLGPSISCWVCPTSGHIGSGL 268

Query: 191 NFRTAYHNAVGASM 204
            FRTAY     AS+
Sbjct: 269 RFRTAYDGMSSASV 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833690|ref|XP_002884727.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297330567|gb|EFH60986.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  308 bits (790), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 144/196 (73%), Positives = 168/196 (85%)

Query: 11  RSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYA 70
           +  GGDLRYCQKCSH+KPPRAHHCRVCKRCVLRMDHHCIWI+NCVGH NYKVFF+FV+YA
Sbjct: 90  KRKGGDLRYCQKCSHFKPPRAHHCRVCKRCVLRMDHHCIWINNCVGHTNYKVFFVFVVYA 149

Query: 71  VVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIF 130
           V AC+YS+VLLVGSLT +  ++E + G   RT YVIS  LL+PLS+AL VLLGWHIYLI 
Sbjct: 150 VTACVYSLVLLVGSLTVEPQDEEEEMGSYLRTIYVISAFLLIPLSIALGVLLGWHIYLIL 209

Query: 131 HNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGL 190
            NKTTIEYHEGVRA+WLAEKGG VYKHPYD+G +ENLT +LGPNI SW+CP+SRHIGSG+
Sbjct: 210 QNKTTIEYHEGVRAMWLAEKGGQVYKHPYDIGAYENLTLILGPNILSWLCPTSRHIGSGV 269

Query: 191 NFRTAYHNAVGASMSK 206
            FRTA+ +   +S +K
Sbjct: 270 RFRTAFDSIPTSSETK 285

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398471|ref|NP_566348.1| putative S-acyltransferase [Arabidopsis thaliana] gi|75249276|sp|Q93VV0.1|ZDHC6_ARATH RecName: Full=Probable S-acyltransferase At3g09320; AltName: Full=Probable palmitoyltransferase At3g09320; AltName: Full=Zinc finger DHHC domain-containing protein At3g09320 gi|14517366|gb|AAK62574.1| AT3g09320/F3L24_19 [Arabidopsis thaliana] gi|16323274|gb|AAL15371.1| AT3g09320/F3L24_19 [Arabidopsis thaliana] gi|332641229|gb|AEE74750.1| putative S-acyltransferase [Arabidopsis thaliana]

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 144/196 (73%), Positives = 168/196 (85%)

Query: 11  RSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYA 70
           +  GGDLRYCQKCSH+KPPRAHHCRVCKRCVLRMDHHCIWI+NCVGH NYKVFF+FV+YA
Sbjct: 90  KRKGGDLRYCQKCSHFKPPRAHHCRVCKRCVLRMDHHCIWINNCVGHTNYKVFFVFVVYA 149

Query: 71  VVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIF 130
           V AC+YS+VLLVGSLT +  ++E + G   RT YVIS  LL+PLS+AL VLLGWHIYLI 
Sbjct: 150 VTACVYSLVLLVGSLTVEPQDEEEEMGSYLRTIYVISAFLLIPLSIALGVLLGWHIYLIL 209

Query: 131 HNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGL 190
            NKTTIEYHEGVRA+WLAEKGG VYKHPYD+G +ENLT +LGPNI SW+CP+SRHIGSG+
Sbjct: 210 QNKTTIEYHEGVRAMWLAEKGGQVYKHPYDIGAYENLTLILGPNILSWLCPTSRHIGSGV 269

Query: 191 NFRTAYHNAVGASMSK 206
            FRTA+ +   +S +K
Sbjct: 270 RFRTAFDSIPDSSETK 285

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6478924|gb|AAF14029.1|AC011436_13 unknown protein [Arabidopsis thaliana]

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 144/197 (73%), Positives = 168/197 (85%), Gaps = 1/197 (0%)

Query: 11  RSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYA 70
           +  GGDLRYCQKCSH+KPPRAHHCRVCKRCVLRMDHHCIWI+NCVGH NYKVFF+FV+YA
Sbjct: 90  KRKGGDLRYCQKCSHFKPPRAHHCRVCKRCVLRMDHHCIWINNCVGHTNYKVFFVFVVYA 149

Query: 71  VVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIF 130
           V AC+YS+VLLVGSLT +  ++E + G   RT YVIS  LL+PLS+AL VLLGWHIYLI 
Sbjct: 150 VTACVYSLVLLVGSLTVEPQDEEEEMGSYLRTIYVISAFLLIPLSIALGVLLGWHIYLIL 209

Query: 131 HNKTTIE-YHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSG 189
            NKTTIE YHEGVRA+WLAEKGG VYKHPYD+G +ENLT +LGPNI SW+CP+SRHIGSG
Sbjct: 210 QNKTTIEVYHEGVRAMWLAEKGGQVYKHPYDIGAYENLTLILGPNILSWLCPTSRHIGSG 269

Query: 190 LNFRTAYHNAVGASMSK 206
           + FRTA+ +   +S +K
Sbjct: 270 VRFRTAFDSIPDSSETK 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2083504	286	AT3G09320 [Arabidopsis thalian	0.951	0.685	0.678	1.5e-76
TAIR|locus:2146713	254	AT5G04270 [Arabidopsis thalian	0.878	0.712	0.489	7.9e-46
GENEDB_PFALCIPARUM|PF10_0273	270	PF10_0273 "DHHC-type zinc fing	0.373	0.285	0.441	6.6e-28
UNIPROTKB|Q8IJC5	270	PF10_0273 "DHHC-type zinc fing	0.373	0.285	0.441	6.6e-28
FB|FBgn0033474	443	CG1407 [Drosophila melanogaste	0.854	0.397	0.361	2.3e-26
UNIPROTKB|J9P566	366	LOC100687370 "Uncharacterized	0.859	0.483	0.326	3.2e-26
UNIPROTKB|F1NVH3	373	F1NVH3 "Uncharacterized protei	0.859	0.474	0.321	4e-26
UNIPROTKB|F1MPF2	364	ZDHHC2 "Uncharacterized protei	0.859	0.486	0.321	5.2e-26
UNIPROTKB|G3MXF3	367	ZDHHC2 "Uncharacterized protei	0.859	0.482	0.321	5.2e-26
UNIPROTKB|F1PU04	327	ZDHHC2 "Uncharacterized protei	0.859	0.541	0.321	5.2e-26

TAIR|locus:2083504 AT3G09320 [Arabidopsis thaliana (taxid:3702)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 133/196 (67%), Positives = 155/196 (79%)

Query:    11 RSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYA 70
             +  GGDLRYCQKCSH+KPPRAHHCRVCKRCVLRMDHHCIWI+NCVGH NYKVFF+FV+YA
Sbjct:    90 KRKGGDLRYCQKCSHFKPPRAHHCRVCKRCVLRMDHHCIWINNCVGHTNYKVFFVFVVYA 149

Query:    71 VVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVIXXXXXXXXXXXXXXXXGWHIYLIF 130
             V AC+YS+VLLVGSLT +  ++E + G   RT YVI                GWHIYLI 
Sbjct:   150 VTACVYSLVLLVGSLTVEPQDEEEEMGSYLRTIYVISAFLLIPLSIALGVLLGWHIYLIL 209

Query:   131 HNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGL 190
              NKTTIEYHEGVRA+WLAEKGG VYKHPYD+G +ENLT +LGPNI SW+CP+SRHIGSG+
Sbjct:   210 QNKTTIEYHEGVRAMWLAEKGGQVYKHPYDIGAYENLTLILGPNILSWLCPTSRHIGSGV 269

Query:   191 NFRTAYHNAVGASMSK 206
              FRTA+ +   +S +K
Sbjct:   270 RFRTAFDSIPDSSETK 285

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2146713 AT5G04270 [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 90/184 (48%), Positives = 115/184 (62%)

Query:    10 TRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLY 69
             + S+  + R C KC  YKP R HHCRVC+RCVL+MDHHC+WI+NCVG+ANYK FFI V Y
Sbjct:    67 SNSNVTETRKCDKCFAYKPLRTHHCRVCRRCVLKMDHHCLWINNCVGYANYKAFFILVFY 126

Query:    70 AVVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVIXXXXXXXXXXXXXXXXGWHIYLI 129
             A VA IYS VLLV     +   D        +T  V                  WHIYLI
Sbjct:   127 ATVASIYSTVLLVCCAFKNG--DSYAGNVPLKTFIVSCGIFMIGLSITLGTLLCWHIYLI 184

Query:   130 FHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPS-SRHIGS 188
              HN TTIE+++  RA WLA K G  Y+H +D+G ++NLTSVLGPN+  W+CP+ +R+   
Sbjct:   185 THNMTTIEHYDSKRASWLARKSGQSYRHQFDVGFYKNLTSVLGPNMIKWLCPTFTRNPED 244

Query:   189 GLNF 192
             G++F
Sbjct:   245 GISF 248

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GENEDB_PFALCIPARUM|PF10_0273 PF10_0273 "DHHC-type zinc finger protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 202 (76.2 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query:    11 RSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYA 70
             R   G+LRYC     YKP R+H+CR  ++ VL+MDH+C W++NCVG  NYK F + + YA
Sbjct:    89 REKTGELRYCIHEKKYKPDRSHYCRAIEKNVLKMDHYCPWVANCVGFYNYKFFLLSLFYA 148

Query:    71 VVACIYSMVLLVGSLTN 87
              + C+Y  +    S  N
Sbjct:   149 NICCLYVNINCYTSFPN 165

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IJC5 PF10_0273 "DHHC-type zinc finger protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 202 (76.2 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query:    11 RSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYA 70
             R   G+LRYC     YKP R+H+CR  ++ VL+MDH+C W++NCVG  NYK F + + YA
Sbjct:    89 REKTGELRYCIHEKKYKPDRSHYCRAIEKNVLKMDHYCPWVANCVGFYNYKFFLLSLFYA 148

Query:    71 VVACIYSMVLLVGSLTN 87
              + C+Y  +    S  N
Sbjct:   149 NICCLYVNINCYTSFPN 165

GO:0008150 "biological_process" evidence=ND

FB|FBgn0033474 CG1407 [Drosophila melanogaster (taxid:7227)]

 Score = 298 (110.0 bits), Expect = 2.3e-26, P = 2.3e-26
 Identities = 69/191 (36%), Positives = 97/191 (50%)

Query:    11 RSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYA 70
             R+  G +R+C+KC   KP RAHHC VC  CVL+MDHHC W++NCV   NYK F +F+ YA
Sbjct:   122 RTMNGSVRFCEKCKIIKPDRAHHCSVCSCCVLKMDHHCPWVNNCVNFYNYKYFVLFLGYA 181

Query:    71 VVACIYSMVLLVGSLTNDSLE------DELQTGGSFRTAYVIXXXXXXXXXXXXXXXXGW 124
             +V C+Y   +   SL +D +E       +L   G  R   +                 G+
Sbjct:   182 LVYCLY---VAFTSL-HDFVEFWKVGAGQLNASGMGRFHILFLFFIAIMFAISLVSLFGY 237

Query:   125 HIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSR 184
             HIYL+  N+TT+E     RA  +   GG   K+ Y+LG + N   V G +   W  P   
Sbjct:   238 HIYLVLVNRTTLE---SFRAP-IFRVGGPD-KNGYNLGRYANFCEVFGDDWQYWFLPVFS 292

Query:   185 HIGSGLNFRTA 195
               G G ++ T+
Sbjct:   293 SRGDGYSYPTS 303

GO:0008270 "zinc ion binding" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=ISS

UNIPROTKB|J9P566 LOC100687370 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 63/193 (32%), Positives = 95/193 (49%)

Query:    10 TRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLY 69
             TR+  G +RYC +C   KP R HHC VC +C+LRMDHHC W++NCVG +NYK F +F+ Y
Sbjct:   118 TRTVSGAIRYCDRCQLLKPDRCHHCSVCDKCILRMDHHCPWVNNCVGFSNYKFFLLFLAY 177

Query:    70 AVVACIY----SMVLLVGSLTNDSLEDELQTGGSFRTAYVIXXXXXXXXXXXXXXXXGWH 125
             +++ C++     +   +   TN  L D   T   F   ++                 G+H
Sbjct:   178 SLLYCLFIAATDLQYFIKFWTN-GLPD---TQAKFHIMFLFFAAAMFSVSLSSLF--GYH 231

Query:   126 IYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRH 185
              +L+  NK+T+E            + GT  K+ + LG  +N+  V G     W+ P    
Sbjct:   232 CWLVSKNKSTLEAFRSP-----VFRHGTD-KNGFSLGFSKNMRQVFGDEKKYWLLPIFSS 285

Query:   186 IGSGLNFRTAYHN 198
             +G G +F T   N
Sbjct:   286 LGDGCSFPTCLVN 298

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NVH3 F1NVH3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 62/193 (32%), Positives = 93/193 (48%)

Query:    10 TRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLY 69
             TR+  G +RYC +C   KP R HHC VC +C+L+MDHHC W++NCVG +NYK F +F+ Y
Sbjct:   126 TRTMSGAIRYCDRCHLVKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAY 185

Query:    70 AVVACIY----SMVLLVGSLTNDSLEDELQTGGSFRTAYVIXXXXXXXXXXXXXXXXGWH 125
             +++ C++     +   +   TN  L D   T   F   ++                 G+H
Sbjct:   186 SLLYCLFIAATDLQYFIKFWTN-GLPD---TQAKFHIMFLFFAAAMFSVSLSSLF--GYH 239

Query:   126 IYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRH 185
              +L+  NK+T+E           +K G      + LG  +NL  V G     W+ P    
Sbjct:   240 CWLVSKNKSTLEVFRAPIFHHRTDKNG------FSLGFSKNLRQVFGDEKKYWLLPVFSS 293

Query:   186 IGSGLNFRTAYHN 198
             +G G +F T   N
Sbjct:   294 LGDGCSFPTCLVN 306

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016409 "palmitoyltransferase activity" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

UNIPROTKB|F1MPF2 ZDHHC2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 62/193 (32%), Positives = 95/193 (49%)

Query:    10 TRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLY 69
             TR+  G +RYC +C   KP R HHC VC +C+L+MDHHC W++NCVG +NYK F +F+ Y
Sbjct:   116 TRTMSGAIRYCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAY 175

Query:    70 AVVACIY----SMVLLVGSLTNDSLEDELQTGGSFRTAYVIXXXXXXXXXXXXXXXXGWH 125
             +++ C++     +   +   TN  L D   T   F   ++                 G+H
Sbjct:   176 SLLYCVFIAATDLQYFIKFWTN-GLPD---TQAKFHIMFLFFAAAMFSVSLSSLF--GYH 229

Query:   126 IYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRH 185
              +L+  NK+T+E            + GT  K+ + LG  +N+  V G     W+ P    
Sbjct:   230 CWLVSKNKSTLEAFRSP-----VFRHGTD-KNGFSLGFGKNMLQVFGDEKRYWLLPIFSS 283

Query:   186 IGSGLNFRTAYHN 198
             +G G +F T   N
Sbjct:   284 LGDGCSFPTCLVN 296

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|G3MXF3 ZDHHC2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 62/193 (32%), Positives = 95/193 (49%)

Query:    10 TRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLY 69
             TR+  G +RYC +C   KP R HHC VC +C+L+MDHHC W++NCVG +NYK F +F+ Y
Sbjct:   119 TRTMSGAIRYCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAY 178

Query:    70 AVVACIY----SMVLLVGSLTNDSLEDELQTGGSFRTAYVIXXXXXXXXXXXXXXXXGWH 125
             +++ C++     +   +   TN  L D   T   F   ++                 G+H
Sbjct:   179 SLLYCVFIAATDLQYFIKFWTN-GLPD---TQAKFHIMFLFFAAAMFSVSLSSLF--GYH 232

Query:   126 IYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRH 185
              +L+  NK+T+E            + GT  K+ + LG  +N+  V G     W+ P    
Sbjct:   233 CWLVSKNKSTLEAFRSP-----VFRHGTD-KNGFSLGFGKNMLQVFGDEKRYWLLPIFSS 286

Query:   186 IGSGLNFRTAYHN 198
             +G G +F T   N
Sbjct:   287 LGDGCSFPTCLVN 299

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0016409 "palmitoyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PU04 ZDHHC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 62/193 (32%), Positives = 95/193 (49%)

Query:    10 TRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLY 69
             TR+  G +RYC +C   KP R HHC VC +C+L+MDHHC W++NCVG +NYK F +F+ Y
Sbjct:    79 TRTMSGAIRYCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFFLLFLAY 138

Query:    70 AVVACIY----SMVLLVGSLTNDSLEDELQTGGSFRTAYVIXXXXXXXXXXXXXXXXGWH 125
             +++ C++     +   +   TN  L D   T   F   ++                 G+H
Sbjct:   139 SLLYCLFIAATDLQYFIKFWTN-GLPD---TQAKFHIMFLFFAAAMFSVSLSSLF--GYH 192

Query:   126 IYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRH 185
              +L+  NK+T+E            + GT  K+ + LG  +N+  V G     W+ P    
Sbjct:   193 CWLVSKNKSTLEAFRSP-----VFRHGTD-KNGFSLGFSKNMRQVFGDEKKYWLLPIFSS 246

Query:   186 IGSGLNFRTAYHN 198
             +G G +F T   N
Sbjct:   247 LGDGCSFPTCLVN 259

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93VV0	ZDHC6_ARATH	2, ., 3, ., 1, ., -	0.7346	0.9514	0.6853	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00060738 hypothetical protein (283 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
pfam01529	167	pfam01529, zf-DHHC, DHHC palmitoyltransferase	3e-39
COG5273	309	COG5273, COG5273, Uncharacterized protein containi	3e-29

>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase

 Score =  132 bits (333), Expect = 3e-39
 Identities = 54/125 (43%), Positives = 72/125 (57%), Gaps = 1/125 (0%)

Query: 15  GDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVAC 74
            +L++C  C+  KPPR+HHCRVC RCVLR DHHC W++NC+G  N+K F +F+LY  +  
Sbjct: 39  DELKFCSTCNIIKPPRSHHCRVCNRCVLRFDHHCPWLNNCIGRRNHKYFLLFLLYLTLYL 98

Query: 75  IYSMVLLVGSLTNDSLEDELQTGGSFRTAYVISGLLL-VPLSVALSVLLGWHIYLIFHNK 133
           I  +VL    L       EL           I  L+L +   + LS LL +H+YLI  N 
Sbjct: 99  ILLLVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLFFHLYLILKNI 158

Query: 134 TTIEY 138
           TT EY
Sbjct: 159 TTYEY 163

This family includes the well known DHHC zinc binding domain as well as three of the four conserved transmembrane regions found in this family of palmitoyltransferase enzymes. Length = 167

>gnl|CDD|227598 COG5273, COG5273, Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

 Score =  109 bits (275), Expect = 3e-29
 Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 3/142 (2%)

Query: 3   KMTKTLCTRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKV 62
           +    L      G   +C  C+ YKPPR+HHC +C RCVL+ DHHC WI+NCVG  NY+ 
Sbjct: 95  ETISRLLDDGKFGTENFCSTCNIYKPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNYRF 154

Query: 63  FFIFVLYAVVACIYSMVLLVGSLTNDSLEDELQTGGSFRTAYVIS-GLLLVPLSVALSVL 121
           F+ F+LY ++  +  +VLL  +     +              +    LL V   +  ++L
Sbjct: 155 FYQFLLYTILVAL--VVLLSTAYYIAGIFSIRHDTSLAICFLIFGCSLLGVVFFIITTLL 212

Query: 122 LGWHIYLIFHNKTTIEYHEGVR 143
           L + IYLI +N TTIE+ +  R
Sbjct: 213 LLFLIYLILNNLTTIEFIQISR 234

Length = 309

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
KOG1315	307	consensus Predicted DHHC-type Zn-finger protein [G	100.0
KOG1311	299	consensus DHHC-type Zn-finger proteins [General fu	100.0
KOG1313	309	consensus DHHC-type Zn-finger proteins [General fu	100.0
KOG1314	414	consensus DHHC-type Zn-finger protein [General fun	100.0
COG5273	309	Uncharacterized protein containing DHHC-type Zn fi	100.0
PF01529	174	zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR0	100.0
KOG1312	341	consensus DHHC-type Zn-finger proteins [General fu	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
COG5273	309	Uncharacterized protein containing DHHC-type Zn fi	95.31
PF01529	174	zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR0	94.88
KOG1311	299	consensus DHHC-type Zn-finger proteins [General fu	94.2
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	92.35
PRK04136	48	rpl40e 50S ribosomal protein L40e; Provisional	91.22
PF13248	26	zf-ribbon_3: zinc-ribbon domain	91.09
PF12773	50	DZR: Double zinc ribbon	87.38
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	85.37
COG1552	50	RPL40A Ribosomal protein L40E [Translation, riboso	82.35
PF12773	50	DZR: Double zinc ribbon	81.02
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	80.86

>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]

Probab=100.00  E-value=5.7e-47  Score=302.00  Aligned_cols=190  Identities=41%  Similarity=0.727  Sum_probs=146.8

Q ss_pred             eEeecCccccccccccccccCCCCCCChhhchhhhCCcccCcccCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028638            8 LCTRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYSMVLLVGSLTN   87 (206)
Q Consensus         8 ~~~~~~~~~~~~C~~C~~~kP~Rs~hC~~c~~cv~~~DHhC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~   87 (206)
                      ....+..+..++|.+|+.+||+|||||++|++||+||||||||+|||||.+|||+|++|++|..+.+++.++.....+..
T Consensus       100 ~~~~~~~g~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~~~~~~~~  179 (307)
T KOG1315|consen  100 GYTRTSDGAVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVTTLIGFTK  179 (307)
T ss_pred             eeEecCCCCceeecccccccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34577888999999999999999999999999999999999999999999999999999999999999888887777665


Q ss_pred             cccchhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHhHHhhhhhHHHHhhCCCcccCCCChhHHHHH
Q 028638           88 DSLEDELQTGGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENL  167 (206)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li~~n~TT~E~~~~~r~~~~~~~~~~~~~npyd~G~~~N~  167 (206)
                      ..... ..........+.++.++.+.+++.+++++.+|++||++|+||+|..+....     +.+....+.|+.  ..|+
T Consensus       180 ~~~~~-~~~~~~~~~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~~~~-----~~~~~~~~~~~~--~~n~  251 (307)
T KOG1315|consen  180 YFQGG-AGPSSLLLFFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKSPVF-----RSGLHNKNGFNL--YVNF  251 (307)
T ss_pred             HHhcc-ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhccccc-----cccccccCCcce--eecH
Confidence            43121 111122234444455566777788888999999999999999998765421     222334566776  8999


Q ss_pred             HhhhCCCcceeeccCcCCC---------CCCceeeeccccccCCCCC
Q 028638          168 TSVLGPNIFSWVCPSSRHI---------GSGLNFRTAYHNAVGASMS  205 (206)
Q Consensus       168 ~~vfG~~~~~w~~P~~~~~---------~dG~~f~~~~~~~~~~~~~  205 (206)
                      +++||+++..|++|...+.         ++|.++.+..+++.+.+++
T Consensus       252 ~~vfg~~~~~wl~P~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (307)
T KOG1315|consen  252 REVFGSNLLYWLLPIDSSWGDGVSFPLRGDGLDFRTASDSKPDNSST  298 (307)
T ss_pred             HHHhCCCceEEeccccCccccCccccccccCCccccccccCcccCcc
Confidence            9999999999999986444         4555555555555555443

>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=100.00  E-value=1.2e-44  Score=294.26  Aligned_cols=190  Identities=31%  Similarity=0.618  Sum_probs=146.8

Q ss_pred             cccceeEeecCccccccccccccccCCCCCCChhhchhhhCCcccCcccCccccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 028638            3 KMTKTLCTRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYSMVLLV   82 (206)
Q Consensus         3 ~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~hC~~c~~cv~~~DHhC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~   82 (206)
                      +..++..+++...+.+||.+|+.+||||||||++||+||.||||||||+|||||++|||+|++|+++..+++++.++...
T Consensus        99 ~~~~~~~~~~~~~~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~  178 (299)
T KOG1311|consen   99 PLYKNVDVNGIQVEWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLF  178 (299)
T ss_pred             ccCCCcccCCcccceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567778888889999999999999999999999999999999999999999999999999999999999998888877


Q ss_pred             HHHhhcccchhhccC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHhHHhhhhhHHHHhhCCCcccCC
Q 028638           83 GSLTNDSLEDELQTG----GSFRTAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHP  158 (206)
Q Consensus        83 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li~~n~TT~E~~~~~r~~~~~~~~~~~~~np  158 (206)
                      ..+............    .......++++++.+.++++++.|+.+|+++|.+|+||+|.++..+       . +...+|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~~~~~~-------~-~~~~~~  250 (299)
T KOG1311|consen  179 YELLQRADNLKVNLTPVLIPAGTFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTYESIKSLD-------F-VSRSNP  250 (299)
T ss_pred             HHHHHhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhhhhccc-------c-ccccCC
Confidence            765542221111111    1112223334444566777788999999999999999999876511       1 111589


Q ss_pred             CChhHHHHHHhhhCCCc-ceeeccCc---CCCCCCceeeecccccc
Q 028638          159 YDLGIFENLTSVLGPNI-FSWVCPSS---RHIGSGLNFRTAYHNAV  200 (206)
Q Consensus       159 yd~G~~~N~~~vfG~~~-~~w~~P~~---~~~~dG~~f~~~~~~~~  200 (206)
                      ||.|.++|++++||.+. ..|+.|..   ..+.||..+......+.
T Consensus       251 ~~~g~~~n~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~  296 (299)
T KOG1311|consen  251 YDLGLLKNLQEVFGGPLPLSWLSPFARSGPLPHDGEGGPPTPHVSI  296 (299)
T ss_pred             CchhHHHHHHHHhCCCCCcccccccccCCCCCCCCCCCCccccccc
Confidence            99999999999999865 79999987   35678887766554443

>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=100.00  E-value=2.2e-42  Score=264.83  Aligned_cols=181  Identities=30%  Similarity=0.496  Sum_probs=135.0

Q ss_pred             ccccccccccccccCCCCCCChhhchhhhCCcccCcccCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 028638           14 GGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYSMVLLVGSLTNDSLEDE   93 (206)
Q Consensus        14 ~~~~~~C~~C~~~kP~Rs~hC~~c~~cv~~~DHhC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (206)
                      .....+|.+|..+||||+|||+.|++||++|||||||+|||||.+|||||++|++|+++++.+..+..........+...
T Consensus        99 ~~~~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~le~~~  178 (309)
T KOG1313|consen   99 LENDSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDHLEPIE  178 (309)
T ss_pred             CccccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHh
Confidence            33458999999999999999999999999999999999999999999999999999999999977775544433221111


Q ss_pred             hc---------cCCch----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHhHHhhhhhHHHHhhCCCc
Q 028638           94 LQ---------TGGSF----------RTAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTV  154 (206)
Q Consensus        94 ~~---------~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~li~~n~TT~E~~~~~r~~~~~~~~~~~  154 (206)
                      ..         ...++          ......+.++.+.++++++.+.+||.++|.+|.|++|+++..+.++.....++ 
T Consensus       179 ~~tay~~d~~h~~Pp~~i~r~~~~i~~t~~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a~~R-  257 (309)
T KOG1313|consen  179 EITAYASDVAHVAPPPSILRVYKNITRTSIANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYLAHLR-  257 (309)
T ss_pred             hcccccCcccccCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHHhcc-
Confidence            00         00000          11122233344557778899999999999999999999987655443333332 


Q ss_pred             ccCCCChhHHHHHHhhhCCC-----cceeeccCc-CCCCCCceeeecc
Q 028638          155 YKHPYDLGIFENLTSVLGPN-----IFSWVCPSS-RHIGSGLNFRTAY  196 (206)
Q Consensus       155 ~~npyd~G~~~N~~~vfG~~-----~~~w~~P~~-~~~~dG~~f~~~~  196 (206)
                       .||++.|..+||+.++|-.     |..-++|.. ++.+.|..+|+++
T Consensus       258 -~~~~n~g~k~nWr~fLg~~~~r~~wk~v~lPt~~~p~~~~~~~~~~d  304 (309)
T KOG1313|consen  258 -SNPTNFGGKANWRNFLGLFRGRHFWKTVLLPTIRKPVKYGDSKEKSD  304 (309)
T ss_pred             -CCCcccchHHHHHHhhccccCCceeEEEeccccccccccCCcccccc
Confidence             7899999999999999842     234578987 5668888888543

>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]

Probab=100.00  E-value=6.7e-42  Score=270.04  Aligned_cols=175  Identities=36%  Similarity=0.596  Sum_probs=131.7

Q ss_pred             ccccccccccccCCCCCCChhhchhhhCCcccCcccCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh--
Q 028638           16 DLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYSMVLLVGSLTNDSLEDE--   93 (206)
Q Consensus        16 ~~~~C~~C~~~kP~Rs~hC~~c~~cv~~~DHhC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~--   93 (206)
                      -.+||.+|+.+||||||||+.|+|||.+|||||||+|||||..||.+|+.||++..++|+.+.++++...+..+...+  
T Consensus        90 ~lqfCk~CqgYKapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~~  169 (414)
T KOG1314|consen   90 FLQFCKKCQGYKAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWYI  169 (414)
T ss_pred             HHHHHhhccCcCCCccccchHHHHHHHhhccCCcchhhcccccccHHHHHHHHHHHHhcccceeeehhHHHHHHHHHHHh
Confidence            457999999999999999999999999999999999999999999999999999999888777766555544322211  


Q ss_pred             -----hccCCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHhHHhhhhhHHHHh----hCCCcccCCCC
Q 028638           94 -----LQTGGSFR----TAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAE----KGGTVYKHPYD  160 (206)
Q Consensus        94 -----~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~li~~n~TT~E~~~~~r~~~~~~----~~~~~~~npyd  160 (206)
                           ........    +..+++.-++++.++.+++|++.|+..|.+|+|.+|.+.-++....++    ...+++..|||
T Consensus       170 ~~g~~hlp~v~ft~~~li~~vfslgla~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka~~rr~~~~~d~~~~f~ypyd  249 (414)
T KOG1314|consen  170 KYGLRHLPIVFFTLSSLIALVFSLGLAIGVVLALTMLFFIQLKQILNNRTGIESWIVEKAMDRREYYFNDDEGEFTYPYD  249 (414)
T ss_pred             hcccccCceeeccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhccCCCCceeeecc
Confidence                 01111111    122222223356777889999999999999999999998555443332    22246889999


Q ss_pred             hhHHHHHHhhhCCCcceeeccCcCCCCCCceeeecccc
Q 028638          161 LGIFENLTSVLGPNIFSWVCPSSRHIGSGLNFRTAYHN  198 (206)
Q Consensus       161 ~G~~~N~~~vfG~~~~~w~~P~~~~~~dG~~f~~~~~~  198 (206)
                      +|+..|+++||-.+.        ...|||++|++-.+.
T Consensus       250 lgWr~n~r~vf~~~~--------~~~gdg~~wPv~~gc  279 (414)
T KOG1314|consen  250 LGWRINLREVFFQNK--------KEEGDGIEWPVVEGC  279 (414)
T ss_pred             ccccccHHHHhhhcc--------ccCCCCccccccCcc
Confidence            998889999996532        367899999876554

>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

Probab=100.00  E-value=1.3e-38  Score=257.41  Aligned_cols=193  Identities=32%  Similarity=0.600  Sum_probs=142.8

Q ss_pred             cccceeEeecCccccccccccccccCCCCCCChhhchhhhCCcccCcccCccccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 028638            3 KMTKTLCTRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYSMVLLV   82 (206)
Q Consensus         3 ~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~hC~~c~~cv~~~DHhC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~   82 (206)
                      ++++.....+..+..++|.+|+.+||+|||||+.||+||+||||||||+|||||.+|||+|++|+++...++++.++...
T Consensus        95 ~~~~~~~~~~~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~  174 (309)
T COG5273          95 ETISRLLDDGKFGTENFCSTCNIYKPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTA  174 (309)
T ss_pred             hhhhhhhhcCccccceeccccccccCCCCccchhhcchhhccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566778889999999999999999999999999999999999999999999999999999999888887777666


Q ss_pred             HHHhhcccchhhccCCchhH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHhCcchHhHHhhhhhHHHHhhC--------
Q 028638           83 GSLTNDSLEDELQTGGSFRT-AYVIS--GLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKG--------  151 (206)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~li~~n~TT~E~~~~~r~~~~~~~~--------  151 (206)
                      ..+.... ..   ....... ..++.  ....+.+++.+.+++.++.+++..|+|++|.....+.....+..        
T Consensus       175 ~~~~~~~-~~---~~~~~~~~~~li~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~  250 (309)
T COG5273         175 YYIAGIF-SI---RHDTSLAICFLIFGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLCRESNL  250 (309)
T ss_pred             HHHHhhc-cc---cCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccchhccCCc
Confidence            5554311 11   1111111 21222  23335566777888899999999999999998765544322111        


Q ss_pred             -------CCcccCCCChhHHHHHHhhhCCCcceeeccCcCCCCCCceeeeccccc
Q 028638          152 -------GTVYKHPYDLGIFENLTSVLGPNIFSWVCPSSRHIGSGLNFRTAYHNA  199 (206)
Q Consensus       152 -------~~~~~npyd~G~~~N~~~vfG~~~~~w~~P~~~~~~dG~~f~~~~~~~  199 (206)
                             +.....|++.|.-+|++.++|.+...|..|......++..|..+.|..
T Consensus       251 ~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (309)
T COG5273         251 PFTNIFDSSEGALPLDLGIGQNLSTIKGSNALYWLTPLHTNYCNSYDFSLRSDTL  305 (309)
T ss_pred             CceeccCCCccccccccCccccceeecCCCceeeccccccCCCCccCcccchhhc
Confidence                   112356889999999999999999999999653336666666665543

>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=2.4e-38  Score=238.59  Aligned_cols=136  Identities=35%  Similarity=0.706  Sum_probs=107.2

Q ss_pred             ceeEeecCccccccccccccccCCCCCCChhhchhhhCCcccCcccCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028638            6 KTLCTRSSGGDLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYSMVLLVGSL   85 (206)
Q Consensus         6 ~~~~~~~~~~~~~~C~~C~~~kP~Rs~hC~~c~~cv~~~DHhC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~   85 (206)
                      ++....+..++.++|.+|+.+||+|||||+.|++||+|+||||||+|+|||++|||+|++|+++..+++++..+..+..+
T Consensus        37 ~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~  116 (174)
T PF01529_consen   37 IDSPEDDENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYL  116 (174)
T ss_pred             hhhhccccCCCCEECcccCCcCCCcceeccccccccccccccchhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445667888999999999999999999999999999999999999999999999999999999999998888777666


Q ss_pred             hhcccchhhccCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHhHHhh
Q 028638           86 TNDSLEDELQTGGSFR-TAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEG  141 (206)
Q Consensus        86 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~li~~n~TT~E~~~~  141 (206)
                      ................ ...+++.+..++++++++.++++|+++|++|+||+|.+++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~  173 (174)
T PF01529_consen  117 VRYIPSISFSSFWIFSNFSSIFLLIISIFFFIFVGFLLIFQLYLILRNITTYERIKR  173 (174)
T ss_pred             HHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHc
Confidence            5533222111111111 1113344445667778899999999999999999998864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=99.97  E-value=1.5e-31  Score=206.43  Aligned_cols=126  Identities=33%  Similarity=0.607  Sum_probs=86.0

Q ss_pred             ccccccccccCCCCCCChhhchhhhCCcccCcccCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhc--
Q 028638           18 RYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYSMVLLVGSLTNDSLEDELQ--   95 (206)
Q Consensus        18 ~~C~~C~~~kP~Rs~hC~~c~~cv~~~DHhC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   95 (206)
                      ..|+||+.+||+|||||++||+||.||||||.|+|||||++|.|||++|+++...++.++.+-+.........+..+.  
T Consensus       149 ~kCSTCki~KPARSKHCsiCNrCV~rfDHHCiWiNNCIG~~N~ryF~lFLL~~i~l~~yaivrlgfi~ln~~sdl~q~v~  228 (341)
T KOG1312|consen  149 VKCSTCKIRKPARSKHCSICNRCVHRFDHHCIWINNCIGAWNIRYFLLFLLTLISLATYAIVRLGFIVLNVMSDLYQEVY  228 (341)
T ss_pred             CccccccCCCccccccchHHHHHHHHhccceEeeecccccchHHHHHHHHHHHHHHHHHHHHHHHheehhhccccchhee
Confidence            579999999999999999999999999999999999999999999999999997777766654433212211111110  


Q ss_pred             ----cCCch--h---HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhCcchHhHHhhhh
Q 028638           96 ----TGGSF--R---TAYVISGLL-------LVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVR  143 (206)
Q Consensus        96 ----~~~~~--~---~~~~~~~~~-------~~~~~~~~~~l~~~~~~li~~n~TT~E~~~~~r  143 (206)
                          .....  .   ...++.++.       .....-++++.+.+-.|+..+|+||.|+...+.
T Consensus       229 ilt~~~g~~ks~~~L~~yl~la~~~~v~~l~~~~~~~~~~~Y~~f~~y~~~t~~~~~~W~~~d~  292 (341)
T KOG1312|consen  229 ILTLGHGHVKSTVFLIQYLFLAFPRIVFMLGFVVVLSFLGGYLLFVLYLAATNQTTNEWYRGDW  292 (341)
T ss_pred             eeeeeecchhhHHHHHHHHHHHhccceeeeehhhhhhHhHHHHHHHHHHHhccCCchhhhccch
Confidence                00000  0   001111110       011222356677778899999999999887633

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=2e-30  Score=219.24  Aligned_cols=166  Identities=27%  Similarity=0.420  Sum_probs=118.1

Q ss_pred             cccceeEeecCcccc-ccccccccccCCCCCCChhhchhhhCCcccCcccCccccCcchHHHHHHHHHHHHHHHHHHHHH
Q 028638            3 KMTKTLCTRSSGGDL-RYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVLYAVVACIYSMVLL   81 (206)
Q Consensus         3 ~~~~~~~~~~~~~~~-~~C~~C~~~kP~Rs~hC~~c~~cv~~~DHhC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~   81 (206)
                      +.++++.-.++.+.. +||.+|.++||.||+||++|++||.||||||||++||||.+||++|+.|++.....+.+.++..
T Consensus       405 ~tIs~l~d~gkf~~en~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~ncVG~kNh~~F~~Fl~~l~~~~~~~l~~~  484 (600)
T KOG0509|consen  405 ETISQLIDFGKFDLENRFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGNCVGLKNHRLFVFFLLTLLTVIVFYLYLC  484 (600)
T ss_pred             HHHHHhhccccccccccceeeeeeecCCccchhhhhHHHHhccccCCCccccccCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555666666 6999999999999999999999999999999999999999999999999999988888888777


Q ss_pred             HHHHhhcccchhhccCCchhHHHHHHHHHHH--HH------------HHHHHHHHHHHHHHHHhCcchHhHHhhhhhHHH
Q 028638           82 VGSLTNDSLEDELQTGGSFRTAYVISGLLLV--PL------------SVALSVLLGWHIYLIFHNKTTIEYHEGVRALWL  147 (206)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------~~~~~~l~~~~~~li~~n~TT~E~~~~~r~~~~  147 (206)
                      ..++.. .....    ......+....+...  ++            ....+..-..|...++.+.||+|.++..|+++.
T Consensus       485 ~~y~~~-~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~n~~~~~t~~~~~~~~~~~~~~c~~~tt~e~~n~~r~~~~  559 (600)
T KOG0509|consen  485 LYYIMN-LENAS----TIYVGFLIAVQAFRIPKPVTGNLLGNEDLNPTWGSTSTKCQHYNCACLHLTTNEQINVKRYEHL  559 (600)
T ss_pred             HHHHhh-cchhH----HHHHHHHHHHHHHhCCccceeeeeeccccccccccccccccccceeeecccHHHHHHHHHhhcc
Confidence            666644 11110    001111111100000  00            001111223344568999999999999998887


Q ss_pred             HhhCCCcccCCCChhHHHHHHhhhCCC
Q 028638          148 AEKGGTVYKHPYDLGIFENLTSVLGPN  174 (206)
Q Consensus       148 ~~~~~~~~~npyd~G~~~N~~~vfG~~  174 (206)
                      ..+.+ +..+|++.|+++|+.+|+-.+
T Consensus       560 ~~~~~-~~~~~~s~g~~~Nl~df~~~~  585 (600)
T KOG0509|consen  560 GIKRG-PTRSPFSPGPIRNLVDFFLCS  585 (600)
T ss_pred             ccccC-cCCCCCCchhhhcchheeecc
Confidence            66555 367899999999999998543

>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

Probab=95.31  E-value=0.29  Score=40.25  Aligned_cols=162  Identities=15%  Similarity=0.183  Sum_probs=85.4

Q ss_pred             CCCCCCChhhchhhhCCcccCcccCccccCcch-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhcc
Q 028638           28 PPRAHHCRVCKRCVLRMDHHCIWISNCVGHANY-----------KVFFIFVLYAVVACIYSMVLLVGSLTNDSLEDELQT   96 (206)
Q Consensus        28 P~Rs~hC~~c~~cv~~~DHhC~w~~~cIG~~N~-----------~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (206)
                      --+.+.|+.|+.-.+..-|||.-=|.||-.--|           +..=.|..++........++....... .   ....
T Consensus       106 ~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~-~---~~~~  181 (309)
T COG5273         106 FGTENFCSTCNIYKPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYY-I---AGIF  181 (309)
T ss_pred             cccceeccccccccCCCCccchhhcchhhccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH-H---Hhhc
Confidence            346788999999999999999999999976543           455577777776666655555544443 1   0111


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHhHHhhhhhHHHHhhCCCcccCCCChhHHHH--HHhhhCCC
Q 028638           97 GGSFRTAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFEN--LTSVLGPN  174 (206)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~li~~n~TT~E~~~~~r~~~~~~~~~~~~~npyd~G~~~N--~~~vfG~~  174 (206)
                      ............++.......+..+......++..+....+...........+......-.++.++-  |  +...+...
T Consensus       182 ~~~~~~~~~~~~li~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~  259 (309)
T COG5273         182 SIRHDTSLAICFLIFGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLCRES--NLPFTNIFDSS  259 (309)
T ss_pred             cccCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccchhccC--CcCceeccCCC
Confidence            1222233332222222123333344444555566666666655433222111111111223444333  3  12222332


Q ss_pred             cceeeccCcCCCCCCceeeeccc
Q 028638          175 IFSWVCPSSRHIGSGLNFRTAYH  197 (206)
Q Consensus       175 ~~~w~~P~~~~~~dG~~f~~~~~  197 (206)
                      +  |.+|...+.++++++...+.
T Consensus       260 ~--~~~~~~~~~~~~~~~i~~~~  280 (309)
T COG5273         260 E--GALPLDLGIGQNLSTIKGSN  280 (309)
T ss_pred             c--cccccccCccccceeecCCC
Confidence            3  66666566677777755543

>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.88  E-value=0.42  Score=35.46  Aligned_cols=61  Identities=23%  Similarity=0.451  Sum_probs=42.0

Q ss_pred             cCCCCCCChhhchhhhCCcccCcccCccccCcch-----------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028638           27 KPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANY-----------KVFFIFVLYAVVACIYSMVLLVGSLTN   87 (206)
Q Consensus        27 kP~Rs~hC~~c~~cv~~~DHhC~w~~~cIG~~N~-----------~~F~~fl~~~~~~~~~~~~~~~~~~~~   87 (206)
                      ...+.+.|..|+.-.+..-|||..-+.||-...|           +..-.|++++....+..+......+..
T Consensus        44 ~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~  115 (174)
T PF01529_consen   44 ENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYY  115 (174)
T ss_pred             cCCCCEECcccCCcCCCcceeccccccccccccccchhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566778888888888888899998888876654           334466666666666555555544444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=94.20  E-value=0.19  Score=40.99  Aligned_cols=56  Identities=20%  Similarity=0.319  Sum_probs=42.6

Q ss_pred             CCCCChhhchhhhCCcccCcccCccccCcc-----------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028638           30 RAHHCRVCKRCVLRMDHHCIWISNCVGHAN-----------YKVFFIFVLYAVVACIYSMVLLVGSL   85 (206)
Q Consensus        30 Rs~hC~~c~~cv~~~DHhC~w~~~cIG~~N-----------~~~F~~fl~~~~~~~~~~~~~~~~~~   85 (206)
                      +.++|..|+..++..-|||+.=++||-..-           +|.+-.|+.+++.+.+...+......
T Consensus       112 ~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~  178 (299)
T KOG1311|consen  112 EWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLF  178 (299)
T ss_pred             ceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            379999999999999999999999998663           67888999777644443333333333

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=92.35  E-value=0.074  Score=25.83  Aligned_cols=21  Identities=29%  Similarity=0.733  Sum_probs=18.2

Q ss_pred             cccccccccCCCCCCChhhch
Q 028638           19 YCQKCSHYKPPRAHHCRVCKR   39 (206)
Q Consensus        19 ~C~~C~~~kP~Rs~hC~~c~~   39 (206)
                      +|+.|...-++.++.|+.||.
T Consensus         1 ~Cp~CG~~~~~~~~fC~~CG~   21 (23)
T PF13240_consen    1 YCPNCGAEIEDDAKFCPNCGT   21 (23)
T ss_pred             CCcccCCCCCCcCcchhhhCC
Confidence            689999888999999999875

>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional

Probab=91.22  E-value=0.1  Score=29.99  Aligned_cols=24  Identities=33%  Similarity=0.819  Sum_probs=21.6

Q ss_pred             ccccccccccccCCCCCCChhhch
Q 028638           16 DLRYCQKCSHYKPPRAHHCRVCKR   39 (206)
Q Consensus        16 ~~~~C~~C~~~kP~Rs~hC~~c~~   39 (206)
                      ..+.|-+|..+-|+|+..|+.||.
T Consensus        13 ~k~ICrkC~ARnp~~A~~CRKCg~   36 (48)
T PRK04136         13 NKKICMRCNARNPWRATKCRKCGY   36 (48)
T ss_pred             cccchhcccCCCCccccccccCCC
Confidence            457899999999999999999875

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=91.09  E-value=0.13  Score=25.72  Aligned_cols=23  Identities=26%  Similarity=0.677  Sum_probs=19.6

Q ss_pred             cccccccccccCCCCCCChhhch
Q 028638           17 LRYCQKCSHYKPPRAHHCRVCKR   39 (206)
Q Consensus        17 ~~~C~~C~~~kP~Rs~hC~~c~~   39 (206)
                      .++|+.|...-++-++.|+.||.
T Consensus         2 ~~~Cp~Cg~~~~~~~~fC~~CG~   24 (26)
T PF13248_consen    2 EMFCPNCGAEIDPDAKFCPNCGA   24 (26)
T ss_pred             cCCCcccCCcCCcccccChhhCC
Confidence            36899999988889999999985

>PF12773 DZR: Double zinc ribbon

Probab=87.38  E-value=0.38  Score=27.93  Aligned_cols=37  Identities=19%  Similarity=0.419  Sum_probs=26.4

Q ss_pred             ccccccccccccccC---CCCCCChhhchhhhCCcccCcc
Q 028638           14 GGDLRYCQKCSHYKP---PRAHHCRVCKRCVLRMDHHCIW   50 (206)
Q Consensus        14 ~~~~~~C~~C~~~kP---~Rs~hC~~c~~cv~~~DHhC~w   50 (206)
                      ..+.+||..|...-+   .....|+.|+.=+...+.+|+.
T Consensus         9 ~~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~~   48 (50)
T PF12773_consen    9 PDDAKFCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCPN   48 (50)
T ss_pred             CccccCChhhcCChhhccCCCCCCcCCcCCCcCCcCccCc
Confidence            445678888877666   3356788888877777777763

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=85.37  E-value=0.39  Score=24.03  Aligned_cols=22  Identities=27%  Similarity=0.712  Sum_probs=18.2

Q ss_pred             ccccccccccCCCCCCChhhch
Q 028638           18 RYCQKCSHYKPPRAHHCRVCKR   39 (206)
Q Consensus        18 ~~C~~C~~~kP~Rs~hC~~c~~   39 (206)
                      +.|+.|...-|.-++-|+.||-
T Consensus         1 K~CP~C~~~V~~~~~~Cp~CG~   22 (26)
T PF10571_consen    1 KTCPECGAEVPESAKFCPHCGY   22 (26)
T ss_pred             CcCCCCcCCchhhcCcCCCCCC
Confidence            4689999888998888988873

Several members are annotated as putative helicases.

>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]

Probab=82.35  E-value=0.31  Score=28.11  Aligned_cols=23  Identities=39%  Similarity=1.000  Sum_probs=20.6

Q ss_pred             cccccccccccCCCCCCChhhch
Q 028638           17 LRYCQKCSHYKPPRAHHCRVCKR   39 (206)
Q Consensus        17 ~~~C~~C~~~kP~Rs~hC~~c~~   39 (206)
                      .+.|-+|..+-|+|+.-|+.|+-
T Consensus        14 kkIC~rC~Arnp~~A~kCRkC~~   36 (50)
T COG1552          14 KKICRRCYARNPPRATKCRKCGY   36 (50)
T ss_pred             HHHHHHhcCCCCcchhHHhhccC
Confidence            46899999999999999998864

>PF12773 DZR: Double zinc ribbon

Probab=81.02  E-value=1  Score=26.08  Aligned_cols=25  Identities=28%  Similarity=0.773  Sum_probs=21.4

Q ss_pred             ccccccccccccccCCCCCCChhhc
Q 028638           14 GGDLRYCQKCSHYKPPRAHHCRVCK   38 (206)
Q Consensus        14 ~~~~~~C~~C~~~kP~Rs~hC~~c~   38 (206)
                      .....+|..|....++.++.|..||
T Consensus        26 ~~~~~~C~~Cg~~~~~~~~fC~~CG   50 (50)
T PF12773_consen   26 DQSKKICPNCGAENPPNAKFCPNCG   50 (50)
T ss_pred             cCCCCCCcCCcCCCcCCcCccCccc
Confidence            4456789999999999999999886

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=80.86  E-value=1.4  Score=39.02  Aligned_cols=52  Identities=8%  Similarity=-0.141  Sum_probs=44.1

Q ss_pred             ccccccccccccCCCCCCChhhchhhhCCcccCcccCccccCcchHHHHHHHH
Q 028638           16 DLRYCQKCSHYKPPRAHHCRVCKRCVLRMDHHCIWISNCVGHANYKVFFIFVL   68 (206)
Q Consensus        16 ~~~~C~~C~~~kP~Rs~hC~~c~~cv~~~DHhC~w~~~cIG~~N~~~F~~fl~   68 (206)
                      -...|.+|....+.+..++..+-.++..+++||+|+. +|+..|-..|-...+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~~~~~~~~~~i  375 (600)
T KOG0509|consen  324 LTCLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFS-KITPYTLFDFHYCFI  375 (600)
T ss_pred             hheeccchhhccccccchhHHHHHHHHHHHHHHhhhe-eccchhhhhhHHHHH
Confidence            3456889999999999999999999999999999999 999988775444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
2ayj_A	56	50S ribosomal protein L40E; Zn-binding, beta-stran	92.19
3j21_g	51	50S ribosomal protein L40E; archaea, archaeal, KIN	90.38
2knc_B	79	Integrin beta-3; transmembrane signaling, protein	80.58

>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7

Probab=92.19  E-value=0.049  Score=31.64  Aligned_cols=27  Identities=33%  Similarity=0.656  Sum_probs=23.0

Q ss_pred             ccccccccccccccCCCCCCChhhchh
Q 028638           14 GGDLRYCQKCSHYKPPRAHHCRVCKRC   40 (206)
Q Consensus        14 ~~~~~~C~~C~~~kP~Rs~hC~~c~~c   40 (206)
                      .-..+.|-+|..+-|+|+..|+.||.-
T Consensus        16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~   42 (56)
T 2ayj_A           16 VFLKKVCRKCGALNPIRATKCRRCHST   42 (56)
T ss_dssp             SCCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred             HhchhhhccccCcCCcccccccCCCCC
Confidence            445678999999999999999998753

>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=90.38  E-value=0.036  Score=31.76  Aligned_cols=29  Identities=24%  Similarity=0.401  Sum_probs=24.1

Q ss_pred             cCccccccccccccccCCCCCCChhhchh
Q 028638           12 SSGGDLRYCQKCSHYKPPRAHHCRVCKRC   40 (206)
Q Consensus        12 ~~~~~~~~C~~C~~~kP~Rs~hC~~c~~c   40 (206)
                      +..-..+.|..|...-|++...|+.||.-
T Consensus         9 ~r~~~k~iCpkC~a~~~~gaw~CrKCG~~   37 (51)
T 3j21_g            9 ARIFKKYVCLRCGATNPWGAKKCRKCGYK   37 (51)
T ss_dssp             HHSSSEEECTTTCCEECTTCSSCSSSSSC
T ss_pred             HHHhCCccCCCCCCcCCCCceecCCCCCc
Confidence            33445688999999999999999999864

>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=80.58  E-value=7.7  Score=24.13  Aligned_cols=40  Identities=25%  Similarity=0.458  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHhHHhhhhh
Q 028638          105 VISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRA  144 (206)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~~~~~~li~~n~TT~E~~~~~r~  144 (206)
                      ++.++++.++++.+..++++-+..-.+..-.++..++++.
T Consensus        13 Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~   52 (79)
T 2knc_B           13 VLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERA   52 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444455555555555555555555544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	206
d2ayja1	56	g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolob	0.003

>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]} Length = 56

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L40e
domain: Ribosomal protein L40e
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 32.5 bits (74), Expect = 0.003
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 20 CQKCSHYKPPRAHHCRVCKRCVLRM 44
          C+KC    P RA  CR C    LR+
Sbjct: 22 CRKCGALNPIRATKCRRCHSTNLRL 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d2ayja1	56	Ribosomal protein L40e {Sulfolobus solfataricus [T	92.22

>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L40e
domain: Ribosomal protein L40e
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.22  E-value=0.025  Score=31.21  Aligned_cols=26  Identities=35%  Similarity=0.687  Sum_probs=22.3

Q ss_pred             ccccccccccccccCCCCCCChhhch
Q 028638           14 GGDLRYCQKCSHYKPPRAHHCRVCKR   39 (206)
Q Consensus        14 ~~~~~~C~~C~~~kP~Rs~hC~~c~~   39 (206)
                      .-..+.|-+|..+-|+|+..|+.|+.
T Consensus        16 ~~~k~ICrkC~AR~p~rAt~CRKCg~   41 (56)
T d2ayja1          16 VFLKKVCRKCGALNPIRATKCRRCHS   41 (56)
T ss_dssp             SCCCEEETTTCCEECTTCSSCTTTCC
T ss_pred             hhhhHHHhhccccCCccccccccCCC
Confidence            34567899999999999999998864